Query 003073
Match_columns 850
No_of_seqs 373 out of 1615
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 16:29:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003073.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003073hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02638 cellulose synthase A 100.0 7E-257 2E-261 2225.7 58.9 847 1-849 1-854 (1079)
2 PLN02400 cellulose synthase 100.0 4E-256 8E-261 2220.5 55.8 824 5-849 24-859 (1085)
3 PLN02436 cellulose synthase A 100.0 1E-252 2E-257 2184.4 57.3 830 5-849 24-870 (1094)
4 PLN02915 cellulose synthase A 100.0 1E-240 2E-245 2084.4 55.0 775 13-849 11-818 (1044)
5 PLN02189 cellulose synthase 100.0 3E-235 7E-240 2037.9 54.8 781 6-849 23-816 (1040)
6 PLN02195 cellulose synthase A 100.0 8E-224 2E-228 1933.3 53.1 743 13-849 2-751 (977)
7 PLN02248 cellulose synthase-li 100.0 3E-191 6E-196 1669.5 50.5 713 9-849 116-911 (1135)
8 PF03552 Cellulose_synt: Cellu 100.0 1E-159 3E-164 1367.0 25.3 495 351-849 1-500 (720)
9 PLN02190 cellulose synthase-li 100.0 3E-153 7E-158 1317.6 39.9 522 252-849 6-536 (756)
10 PLN02893 Cellulose synthase-li 100.0 9E-147 2E-151 1268.8 42.5 503 252-849 9-522 (734)
11 TIGR03030 CelA cellulose synth 100.0 5.8E-51 1.3E-55 479.3 28.3 331 272-849 57-402 (713)
12 PRK11498 bcsA cellulose syntha 100.0 1.2E-50 2.6E-55 480.7 27.8 311 274-849 189-513 (852)
13 PF14569 zf-UDP: Zinc-binding 100.0 1.9E-44 4.2E-49 312.9 4.4 80 9-89 1-80 (80)
14 cd04191 Glucan_BSP_ModH Glucan 100.0 6.3E-36 1.4E-40 313.4 21.7 182 516-827 67-253 (254)
15 PRK05454 glucosyltransferase M 100.0 2.3E-33 5E-38 328.9 28.6 323 270-831 40-382 (691)
16 COG1215 Glycosyltransferases, 100.0 1.6E-32 3.5E-37 299.5 20.4 234 348-832 53-291 (439)
17 PRK14583 hmsR N-glycosyltransf 100.0 3.8E-30 8.2E-35 287.5 23.8 231 346-833 72-308 (444)
18 PRK11204 N-glycosyltransferase 100.0 1.5E-28 3.3E-33 270.1 23.4 237 345-833 50-287 (420)
19 cd06437 CESA_CaSu_A2 Cellulose 100.0 2.7E-28 5.8E-33 245.7 21.7 228 349-825 1-232 (232)
20 cd06421 CESA_CelA_like CESA_Ce 100.0 1.8E-28 3.8E-33 243.8 18.9 229 349-829 1-234 (234)
21 cd06427 CESA_like_2 CESA_like_ 100.0 3.4E-27 7.3E-32 240.2 21.5 233 349-832 1-237 (241)
22 TIGR03111 glyc2_xrt_Gpos1 puta 100.0 5.9E-27 1.3E-31 261.9 25.1 244 345-836 45-297 (439)
23 cd06435 CESA_NdvC_like NdvC_li 100.0 1.1E-26 2.4E-31 233.2 22.5 230 352-832 1-235 (236)
24 PRK14716 bacteriophage N4 adso 99.9 1E-26 2.2E-31 265.1 24.0 242 347-831 64-330 (504)
25 PRK11234 nfrB bacteriophage N4 99.9 4.5E-26 9.8E-31 269.0 21.0 242 346-831 60-335 (727)
26 PF13641 Glyco_tranf_2_3: Glyc 99.9 1.5E-26 3.2E-31 230.6 7.0 224 349-824 1-228 (228)
27 cd04190 Chitin_synth_C C-termi 99.9 1.1E-24 2.5E-29 224.2 11.1 53 773-827 189-243 (244)
28 cd04192 GT_2_like_e Subfamily 99.9 6.4E-23 1.4E-27 202.4 17.9 226 353-824 1-229 (229)
29 TIGR03472 HpnI hopanoid biosyn 99.9 1.3E-22 2.8E-27 222.2 21.4 236 346-827 38-274 (373)
30 cd02520 Glucosylceramide_synth 99.9 9E-23 1.9E-27 201.7 16.9 194 349-823 1-194 (196)
31 PRK15489 nfrB bacteriophage N4 99.9 4.3E-22 9.4E-27 233.8 24.4 173 531-831 139-343 (703)
32 cd06434 GT2_HAS Hyaluronan syn 99.9 6.4E-21 1.4E-25 190.6 18.4 167 531-826 62-233 (235)
33 cd06439 CESA_like_1 CESA_like_ 99.9 3.6E-20 7.7E-25 187.8 19.7 127 345-597 25-151 (251)
34 cd02525 Succinoglycan_BP_ExoA 99.8 1.1E-18 2.5E-23 174.4 19.2 55 776-832 180-234 (249)
35 TIGR03469 HonB hopene-associat 99.8 1.9E-17 4.1E-22 182.5 21.1 135 345-593 36-171 (384)
36 cd06436 GlcNAc-1-P_transferase 99.7 4.8E-17 1E-21 161.2 13.9 114 518-638 52-175 (191)
37 PF13632 Glyco_trans_2_3: Glyc 99.7 1.4E-16 3E-21 156.5 10.5 138 553-825 1-143 (193)
38 cd06438 EpsO_like EpsO protein 99.6 8.2E-16 1.8E-20 150.4 11.6 102 531-638 61-167 (183)
39 cd04184 GT2_RfbC_Mx_like Myxoc 99.6 9.8E-15 2.1E-19 142.6 16.2 121 349-593 1-122 (202)
40 cd04195 GT2_AmsE_like GT2_AmsE 99.6 4.3E-14 9.4E-19 138.3 17.1 64 518-595 57-121 (201)
41 cd02510 pp-GalNAc-T pp-GalNAc- 99.5 1.7E-12 3.7E-17 137.4 18.8 110 352-578 1-110 (299)
42 cd02522 GT_2_like_a GT_2_like_ 99.5 1.8E-12 4E-17 128.4 17.9 42 351-398 1-42 (221)
43 cd06433 GT_2_WfgS_like WfgS an 99.5 8E-13 1.7E-17 127.1 14.7 55 532-595 61-116 (202)
44 cd04196 GT_2_like_d Subfamily 99.5 8.7E-13 1.9E-17 129.2 14.4 119 352-595 1-120 (214)
45 PLN02726 dolichyl-phosphate be 99.4 6.9E-12 1.5E-16 128.7 19.1 51 532-591 79-129 (243)
46 cd06913 beta3GnTL1_like Beta 1 99.4 3.9E-12 8.4E-17 127.5 16.5 45 353-402 1-45 (219)
47 cd06420 GT2_Chondriotin_Pol_N 99.4 5.1E-12 1.1E-16 121.6 16.6 42 532-579 65-106 (182)
48 cd04186 GT_2_like_c Subfamily 99.4 1.1E-11 2.3E-16 115.9 15.0 51 532-591 60-111 (166)
49 PF13506 Glyco_transf_21: Glyc 99.4 2.6E-12 5.7E-17 128.5 11.0 60 531-598 15-74 (175)
50 cd06442 DPM1_like DPM1_like re 99.3 3.2E-11 7E-16 119.8 17.3 51 532-591 64-114 (224)
51 cd04185 GT_2_like_b Subfamily 99.3 2.8E-11 6.2E-16 119.1 16.4 56 532-594 62-117 (202)
52 cd02526 GT2_RfbF_like RfbF is 99.3 1.5E-11 3.2E-16 123.6 12.4 64 518-593 49-116 (237)
53 PF00535 Glycos_transf_2: Glyc 99.3 3.5E-12 7.7E-17 117.9 6.6 164 352-639 1-166 (169)
54 COG2943 MdoH Membrane glycosyl 99.3 1.2E-09 2.6E-14 123.8 25.1 181 517-829 213-400 (736)
55 PRK10073 putative glycosyl tra 99.2 1.9E-10 4.2E-15 125.2 17.5 110 347-579 4-113 (328)
56 cd06423 CESA_like CESA_like is 99.2 9.5E-11 2.1E-15 107.9 12.7 161 353-639 1-167 (180)
57 cd04188 DPG_synthase DPG_synth 99.2 3E-10 6.4E-15 113.3 14.8 50 533-591 69-118 (211)
58 cd04179 DPM_DPG-synthase_like 99.1 4.1E-10 8.9E-15 108.4 11.9 163 353-640 1-165 (185)
59 PRK10063 putative glycosyl tra 99.1 2.2E-09 4.8E-14 112.5 16.7 50 349-402 1-51 (248)
60 PRK10018 putative glycosyl tra 99.1 3.2E-09 7E-14 113.8 17.5 110 347-578 3-112 (279)
61 PF03142 Chitin_synth_2: Chiti 99.1 6E-09 1.3E-13 120.4 19.3 53 775-829 324-378 (527)
62 TIGR01556 rhamnosyltran L-rham 99.0 5.5E-09 1.2E-13 109.5 14.9 68 517-594 46-113 (281)
63 PF14570 zf-RING_4: RING/Ubox 99.0 2.5E-10 5.4E-15 92.9 2.9 48 20-70 1-48 (48)
64 PRK13915 putative glucosyl-3-p 99.0 4.8E-09 1E-13 113.7 13.7 51 532-590 101-152 (306)
65 PTZ00260 dolichyl-phosphate be 99.0 1.7E-08 3.8E-13 110.5 17.1 54 345-402 66-125 (333)
66 cd04187 DPM1_like_bac Bacteria 98.9 9E-09 2E-13 99.9 12.2 103 518-639 57-160 (181)
67 cd00761 Glyco_tranf_GTA_type G 98.8 1.1E-07 2.4E-12 85.5 13.6 52 531-591 62-114 (156)
68 PF10111 Glyco_tranf_2_2: Glyc 98.8 2.1E-07 4.5E-12 99.1 16.9 62 532-599 74-135 (281)
69 COG1216 Predicted glycosyltran 98.7 2.2E-07 4.8E-12 99.7 15.9 122 348-595 2-125 (305)
70 PRK10714 undecaprenyl phosphat 98.6 4.1E-07 8.9E-12 99.4 12.4 41 532-577 76-116 (325)
71 COG0463 WcaA Glycosyltransfera 98.4 2.9E-06 6.2E-11 76.7 10.1 49 348-402 2-50 (291)
72 KOG2571 Chitin synthase/hyalur 98.3 5.6E-06 1.2E-10 99.9 13.7 48 775-824 549-596 (862)
73 cd02511 Beta4Glucosyltransfera 98.2 9.5E-06 2.1E-10 83.2 11.4 42 533-579 58-99 (229)
74 KOG2547 Ceramide glucosyltrans 97.8 0.00078 1.7E-08 75.3 17.0 158 532-823 156-314 (431)
75 KOG2978 Dolichol-phosphate man 97.1 0.0018 3.8E-08 67.1 8.9 53 517-579 64-116 (238)
76 cd02514 GT13_GLCNAC-TI GT13_GL 96.8 0.015 3.2E-07 65.0 13.5 90 531-643 83-176 (334)
77 COG5175 MOT2 Transcriptional r 96.4 0.0013 2.8E-08 72.4 1.7 48 19-69 16-63 (480)
78 KOG2977 Glycosyltransferase [G 96.2 0.18 3.9E-06 55.4 16.3 57 350-420 68-130 (323)
79 TIGR00570 cdk7 CDK-activating 95.7 0.012 2.6E-07 65.0 4.7 59 16-76 2-60 (309)
80 PF14446 Prok-RING_1: Prokaryo 94.3 0.032 6.9E-07 47.2 2.6 46 16-69 4-51 (54)
81 KOG3737 Predicted polypeptide 90.7 1.1 2.3E-05 51.4 9.0 48 345-395 151-198 (603)
82 KOG3736 Polypeptide N-acetylga 89.5 0.48 1E-05 56.7 5.3 49 345-396 138-186 (578)
83 cd00162 RING RING-finger (Real 88.5 0.48 1E-05 35.7 3.0 44 19-68 1-44 (45)
84 PF05290 Baculo_IE-1: Baculovi 86.3 0.47 1E-05 47.0 2.2 52 18-73 81-135 (140)
85 smart00504 Ubox Modified RING 77.6 2.6 5.7E-05 35.0 3.4 44 19-70 3-46 (63)
86 PRK14559 putative protein seri 76.4 1.4 3E-05 53.7 1.8 24 47-71 30-53 (645)
87 KOG3738 Predicted polypeptide 76.4 3.2 7E-05 47.9 4.6 50 346-398 121-170 (559)
88 PF13704 Glyco_tranf_2_4: Glyc 76.3 11 0.00024 33.7 7.2 35 363-402 3-37 (97)
89 PF03452 Anp1: Anp1; InterPro 74.3 33 0.00071 38.0 11.4 57 345-405 21-79 (269)
90 PHA02929 N1R/p28-like protein; 73.4 4.2 9.1E-05 44.0 4.3 55 15-70 172-227 (238)
91 PF13712 Glyco_tranf_2_5: Glyc 73.1 4.4 9.6E-05 42.6 4.4 49 532-588 40-89 (217)
92 KOG3800 Predicted E3 ubiquitin 72.2 2.9 6.4E-05 46.2 2.9 53 18-72 1-53 (300)
93 PLN03208 E3 ubiquitin-protein 70.4 6.1 0.00013 41.6 4.6 63 1-70 1-79 (193)
94 smart00659 RPOLCX RNA polymera 70.2 2.9 6.3E-05 34.1 1.8 27 18-46 3-29 (44)
95 PF13639 zf-RING_2: Ring finge 70.1 3.2 6.9E-05 32.7 2.0 43 19-66 2-44 (44)
96 PF14447 Prok-RING_4: Prokaryo 69.9 2.1 4.6E-05 36.6 1.0 47 16-72 6-52 (55)
97 PF03966 Trm112p: Trm112p-like 68.3 1.3 2.8E-05 38.6 -0.7 25 48-72 42-66 (68)
98 PF03604 DNA_RNApol_7kD: DNA d 68.2 3.9 8.3E-05 31.4 1.9 26 19-46 2-27 (32)
99 PF02318 FYVE_2: FYVE-type zin 67.1 1.3 2.8E-05 42.5 -1.0 48 15-65 52-100 (118)
100 KOG0823 Predicted E3 ubiquitin 67.0 3.7 8.1E-05 44.1 2.3 47 16-70 46-95 (230)
101 KOG2068 MOT2 transcription fac 65.2 5.1 0.00011 45.1 3.0 52 17-72 249-300 (327)
102 smart00184 RING Ring finger. E 63.4 6.9 0.00015 28.1 2.5 39 20-65 1-39 (39)
103 KOG0006 E3 ubiquitin-protein l 60.7 7.2 0.00016 43.8 3.1 64 12-76 310-414 (446)
104 PHA02862 5L protein; Provision 60.0 5.5 0.00012 40.3 1.9 49 17-71 2-54 (156)
105 PRK00420 hypothetical protein; 60.0 4.1 8.8E-05 39.5 0.9 29 37-71 24-52 (112)
106 KOG2932 E3 ubiquitin ligase in 59.7 5.9 0.00013 44.3 2.2 44 30-73 84-137 (389)
107 PHA02825 LAP/PHD finger-like p 58.1 8.4 0.00018 39.5 2.8 52 15-72 6-61 (162)
108 smart00249 PHD PHD zinc finger 57.0 8.1 0.00018 29.4 2.0 43 19-65 1-47 (47)
109 PF14471 DUF4428: Domain of un 56.7 6.2 0.00013 33.1 1.4 28 19-52 1-28 (51)
110 PRK14503 mannosyl-3-phosphogly 56.4 32 0.0007 39.6 7.3 43 531-576 142-184 (393)
111 COG5114 Histone acetyltransfer 55.4 4.1 8.9E-05 45.6 0.2 36 19-58 7-43 (432)
112 PF13923 zf-C3HC4_2: Zinc fing 53.1 13 0.00028 28.7 2.6 39 20-65 1-39 (39)
113 smart00291 ZnF_ZZ Zinc-binding 52.9 14 0.0003 29.7 2.8 38 16-58 3-41 (44)
114 PF00097 zf-C3HC4: Zinc finger 52.4 11 0.00024 28.9 2.1 40 20-65 1-41 (41)
115 PF13920 zf-C3HC4_3: Zinc fing 51.6 15 0.00032 29.8 2.8 46 18-71 3-49 (50)
116 PRK00398 rpoP DNA-directed RNA 49.8 11 0.00024 30.4 1.8 28 18-46 4-31 (46)
117 PRK15103 paraquat-inducible me 49.0 14 0.0003 43.0 3.1 30 34-72 219-248 (419)
118 PRK04023 DNA polymerase II lar 48.7 12 0.00026 47.6 2.7 45 15-70 624-674 (1121)
119 PRK07220 DNA topoisomerase I; 48.1 10 0.00022 47.0 2.0 48 18-67 590-643 (740)
120 TIGR00155 pqiA_fam integral me 46.8 12 0.00026 43.2 2.2 30 35-72 214-243 (403)
121 cd02249 ZZ Zinc finger, ZZ typ 46.5 17 0.00037 29.4 2.4 31 19-54 2-33 (46)
122 TIGR02460 osmo_MPGsynth mannos 46.0 83 0.0018 36.2 8.4 43 531-576 141-183 (381)
123 cd02335 ZZ_ADA2 Zinc finger, Z 45.3 19 0.0004 29.7 2.5 30 19-52 2-32 (49)
124 PF03071 GNT-I: GNT-I family; 45.0 24 0.00053 41.4 4.2 51 345-400 89-140 (434)
125 KOG0457 Histone acetyltransfer 43.8 10 0.00022 44.1 0.9 50 17-73 14-64 (438)
126 KOG2068 MOT2 transcription fac 43.2 10 0.00022 42.7 0.9 30 43-72 1-32 (327)
127 PF13896 Glyco_transf_49: Glyc 43.2 25 0.00054 39.3 3.8 41 548-589 125-165 (317)
128 COG0551 TopA Zn-finger domain 42.2 18 0.00039 35.5 2.3 50 14-67 14-68 (140)
129 PF07649 C1_3: C1-like domain; 41.6 16 0.00036 26.9 1.5 28 19-50 2-29 (30)
130 PF07282 OrfB_Zn_ribbon: Putat 41.1 20 0.00043 30.8 2.1 33 16-49 27-59 (69)
131 PF02364 Glucan_synthase: 1,3- 41.0 25 0.00055 44.1 3.8 55 775-832 409-464 (817)
132 PHA02926 zinc finger-like prot 40.8 31 0.00067 37.4 3.9 61 15-75 168-235 (242)
133 cd00350 rubredoxin_like Rubred 40.4 12 0.00025 28.5 0.5 19 52-70 10-28 (33)
134 TIGR02443 conserved hypothetic 40.3 19 0.0004 31.5 1.8 31 15-45 7-40 (59)
135 PF09488 Osmo_MPGsynth: Mannos 37.7 2.9E+02 0.0062 32.2 10.9 40 532-574 142-181 (381)
136 PF11077 DUF2616: Protein of u 37.6 11 0.00023 39.2 -0.1 35 20-59 55-104 (173)
137 PF14634 zf-RING_5: zinc-RING 37.2 36 0.00078 27.0 2.9 43 20-67 2-44 (44)
138 PRK07219 DNA topoisomerase I; 36.3 21 0.00046 44.8 2.2 53 17-72 688-746 (822)
139 COG1996 RPC10 DNA-directed RNA 36.2 19 0.00041 30.4 1.1 29 17-46 6-34 (49)
140 PF09484 Cas_TM1802: CRISPR-as 36.2 19 0.0004 43.4 1.6 41 14-54 195-251 (593)
141 PRK14973 DNA topoisomerase I; 36.1 26 0.00056 44.8 2.9 49 17-68 588-644 (936)
142 PF06906 DUF1272: Protein of u 35.6 40 0.00087 29.3 3.0 47 18-70 6-52 (57)
143 PF00628 PHD: PHD-finger; Int 35.6 29 0.00063 27.9 2.2 45 19-67 1-50 (51)
144 PRK11827 hypothetical protein; 35.3 26 0.00055 30.7 1.9 33 45-77 12-44 (60)
145 COG4739 Uncharacterized protei 35.2 20 0.00043 36.6 1.3 45 26-70 77-121 (182)
146 PRK12495 hypothetical protein; 34.4 18 0.00039 38.9 0.9 30 35-71 41-70 (226)
147 PRK12380 hydrogenase nickel in 34.3 13 0.00028 35.7 -0.1 26 37-69 71-96 (113)
148 PRK14890 putative Zn-ribbon RN 32.7 57 0.0012 28.6 3.5 50 16-67 6-56 (59)
149 PRK11595 DNA utilization prote 32.2 31 0.00067 36.5 2.3 39 17-68 5-43 (227)
150 PRK14502 bifunctional mannosyl 31.8 1.6E+02 0.0036 36.7 8.5 43 531-576 146-188 (694)
151 COG2888 Predicted Zn-ribbon RN 31.4 43 0.00094 29.4 2.6 48 17-66 9-57 (61)
152 TIGR00599 rad18 DNA repair pro 31.3 37 0.0008 39.5 2.9 45 18-70 27-71 (397)
153 cd02336 ZZ_RSC8 Zinc finger, Z 30.5 41 0.00088 27.7 2.2 33 19-56 2-35 (45)
154 PF11238 DUF3039: Protein of u 30.3 16 0.00034 31.8 -0.2 13 59-71 44-56 (58)
155 cd00730 rubredoxin Rubredoxin; 30.2 17 0.00037 30.5 -0.0 7 61-67 36-42 (50)
156 PF09623 Cas_NE0113: CRISPR-as 29.3 3.2E+02 0.007 29.6 9.3 60 353-421 4-63 (224)
157 KOG2824 Glutaredoxin-related p 29.1 34 0.00075 37.9 2.0 22 14-43 226-247 (281)
158 TIGR01206 lysW lysine biosynth 28.9 40 0.00087 28.8 2.0 25 18-43 3-29 (54)
159 PF13248 zf-ribbon_3: zinc-rib 28.4 17 0.00038 26.2 -0.2 15 54-68 11-25 (26)
160 PRK14873 primosome assembly pr 27.9 41 0.00088 41.5 2.6 10 59-68 422-431 (665)
161 PRK06319 DNA topoisomerase I/S 27.3 40 0.00086 42.8 2.4 57 15-74 590-660 (860)
162 KOG1941 Acetylcholine receptor 27.2 20 0.00043 41.5 -0.1 63 16-81 364-432 (518)
163 PF12773 DZR: Double zinc ribb 27.2 44 0.00096 26.9 1.9 13 16-28 11-23 (50)
164 PRK09382 ispDF bifunctional 2- 27.1 1.3E+02 0.0029 34.6 6.4 45 551-595 96-159 (378)
165 PTZ00293 thymidine kinase; Pro 26.9 29 0.00064 37.0 1.0 35 18-52 138-177 (211)
166 PF13240 zinc_ribbon_2: zinc-r 26.8 19 0.00042 25.5 -0.2 13 56-68 10-22 (23)
167 PF09526 DUF2387: Probable met 26.4 42 0.00092 30.1 1.8 31 15-45 6-39 (71)
168 COG4391 Uncharacterized protei 25.9 27 0.00059 30.7 0.5 17 55-71 44-60 (62)
169 TIGR00155 pqiA_fam integral me 25.7 50 0.0011 38.4 2.7 34 35-72 12-46 (403)
170 PF04641 Rtf2: Rtf2 RING-finge 25.5 59 0.0013 35.3 3.0 49 16-70 112-161 (260)
171 COG0551 TopA Zn-finger domain 25.3 31 0.00068 33.8 0.8 52 15-70 58-112 (140)
172 KOG0311 Predicted E3 ubiquitin 25.2 19 0.00041 41.1 -0.7 46 18-69 44-89 (381)
173 PF02411 MerT: MerT mercuric t 25.1 2.2E+02 0.0049 27.8 6.6 53 268-320 47-115 (116)
174 TIGR00595 priA primosomal prot 25.0 36 0.00078 40.4 1.4 49 30-78 206-259 (505)
175 PF14446 Prok-RING_1: Prokaryo 24.6 23 0.00051 30.3 -0.1 17 56-72 18-34 (54)
176 KOG2177 Predicted E3 ubiquitin 24.6 38 0.00083 34.5 1.4 44 16-67 12-55 (386)
177 cd00065 FYVE FYVE domain; Zinc 24.6 40 0.00087 27.6 1.2 38 17-57 2-39 (57)
178 PF08274 PhnA_Zn_Ribbon: PhnA 24.4 31 0.00067 26.3 0.5 25 18-44 3-27 (30)
179 PRK08359 transcription factor; 24.3 26 0.00057 36.4 0.1 30 18-55 7-42 (176)
180 PRK00564 hypA hydrogenase nick 24.1 28 0.00061 33.6 0.3 28 37-71 72-100 (117)
181 TIGR02556 cas_TM1802 CRISPR-as 24.1 47 0.001 40.2 2.1 37 17-53 170-218 (555)
182 cd03031 GRX_GRX_like Glutaredo 24.0 41 0.00088 33.9 1.4 43 16-67 98-141 (147)
183 PF00643 zf-B_box: B-box zinc 23.9 57 0.0012 25.3 1.9 31 17-54 3-33 (42)
184 PRK14714 DNA polymerase II lar 23.9 42 0.00092 44.0 1.8 48 18-72 668-722 (1337)
185 PF02709 Glyco_transf_7C: N-te 23.9 46 0.001 29.9 1.6 48 721-798 20-67 (78)
186 TIGR02302 aProt_lowcomp conser 23.4 1.8E+02 0.004 37.2 7.0 60 271-336 22-82 (851)
187 TIGR03602 streptolysinS bacter 23.2 29 0.00062 29.4 0.1 12 650-661 23-35 (56)
188 PRK03681 hypA hydrogenase nick 23.1 27 0.00058 33.6 -0.1 27 37-70 71-98 (114)
189 PRK06393 rpoE DNA-directed RNA 23.0 38 0.00082 30.0 0.8 23 35-68 4-26 (64)
190 TIGR00100 hypA hydrogenase nic 22.7 33 0.00071 33.1 0.4 28 37-71 71-98 (115)
191 PF14354 Lar_restr_allev: Rest 22.5 55 0.0012 27.4 1.7 26 19-44 5-37 (61)
192 PF14319 Zn_Tnp_IS91: Transpos 22.5 58 0.0013 31.3 2.0 34 31-71 37-72 (111)
193 PF04724 Glyco_transf_17: Glyc 21.9 2.1E+02 0.0045 32.9 6.6 36 536-573 165-200 (356)
194 PF07754 DUF1610: Domain of un 21.8 75 0.0016 23.2 2.0 24 20-44 1-24 (24)
195 PF03107 C1_2: C1 domain; Int 21.8 63 0.0014 24.0 1.7 28 19-50 2-29 (30)
196 PRK05582 DNA topoisomerase I; 21.6 59 0.0013 39.9 2.4 51 17-71 571-623 (650)
197 PF13719 zinc_ribbon_5: zinc-r 21.6 39 0.00085 26.4 0.6 11 61-71 4-14 (37)
198 PF15632 ATPgrasp_Ter: ATP-gra 21.4 1.2E+02 0.0027 34.4 4.6 59 350-426 66-124 (329)
199 KOG3507 DNA-directed RNA polym 21.1 58 0.0012 28.6 1.5 30 15-46 18-47 (62)
200 PF01155 HypA: Hydrogenase exp 21.0 22 0.00048 34.0 -1.1 30 36-72 70-99 (113)
201 PRK07726 DNA topoisomerase III 20.8 66 0.0014 39.6 2.5 46 17-67 610-657 (658)
202 PF13717 zinc_ribbon_4: zinc-r 20.4 43 0.00093 26.1 0.6 10 61-70 4-13 (36)
203 TIGR03830 CxxCG_CxxCG_HTH puta 20.2 42 0.00091 31.6 0.6 40 20-69 1-41 (127)
204 PRK03982 heat shock protein Ht 20.1 2.9E+02 0.0064 30.3 7.1 7 386-392 87-93 (288)
205 COG1499 NMD3 NMD protein affec 20.0 60 0.0013 37.3 1.8 43 14-69 3-53 (355)
No 1
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=100.00 E-value=7.3e-257 Score=2225.67 Aligned_cols=847 Identities=90% Similarity=1.443 Sum_probs=775.3
Q ss_pred CCCCCCCCCccccccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccccccccCCCCcccC
Q 003073 1 MESEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILG 80 (850)
Q Consensus 1 ~~~~~~~~~k~~~~~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr~kGs~rv~g 80 (850)
||+.|+.++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+|
T Consensus 1 ~~~~~~~~~k~~~~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~kgsprv~g 80 (1079)
T PLN02638 1 MESEGETGAKPMKHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHKGSPAILG 80 (1079)
T ss_pred CCCCCCCCCCCccccCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCcCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCCCCCCCccCCCccchhhhhhhHHHHhhhhhccCCCCCCCCCCCCccccCCCCCcccCCccccCCCCCCCcccc
Q 003073 81 DREEDGDADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHL 160 (850)
Q Consensus 81 d~e~e~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (850)
|||||+|+||+||||+|..+++...++++|+|++|+|++|++.|.++..++++.+++++|+|++||.+++|+++++++|+
T Consensus 81 Deeed~~~dDle~ef~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 160 (1079)
T PLN02638 81 DEEEDGDADDGASDFNYPSSNQDQKQKIAERMLSWRMNSGRGEDVGAPNYDKEVSHNHIPLLTNGQSVSGELSAASPERL 160 (1079)
T ss_pred cccccCcchhhhhhhccccccccchhHHHHHHhhhhcccCcCcccccccccccCCCCCCcccccCccccCccCCCCCccc
Confidence 95555558999999999654555567889999999999999988777777877556788999999988999997776666
Q ss_pred ccCCCCCCCCCccccCCCCCCCCCccccCCCCCCCCCCCccccccchhhhhhhhccccccccCCCCccccCCCC-CCCCC
Q 003073 161 SMASPGVGPGKRIHYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGG-DIDAS 239 (850)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 239 (850)
.++++.+ .||||||+|+.+.+++.|.|||+||+++||||||+||+|||+||+||+|++.++.+.....+++|+ ++++.
T Consensus 161 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~wk~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 239 (1079)
T PLN02638 161 SMASPGA-GGKRIPYASDVNQSPNIRVVDPVREFGSPGLGNVAWKERVDGWKMKQDKNTIPMSTGTAPSEGRGGGDIDAS 239 (1079)
T ss_pred cccCccc-cCCcccccccccccCCcccCCccccccccccccHHHHHHHHHHHhcccccccccccccccccccCcCCCCCc
Confidence 5655554 689999999877778999999999999999999999999999999999887777766544565543 33321
Q ss_pred CCcccCCcccccccCCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHhh
Q 003073 240 TDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQ 319 (850)
Q Consensus 240 ~~~~~~~~~~~~~~~~pL~rk~~~~~~~~~~yR~~i~~~l~~~~~yl~wRi~~~~~~a~~lWl~~vi~Ei~fa~~wiL~q 319 (850)
.+.+++|+++++++++||+||+++++++|++||++++++|+++++||+||+++++.+++|+|+++|+||+||+|+|+|+|
T Consensus 240 ~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~WFaf~Wll~q 319 (1079)
T PLN02638 240 TDVLMDDALLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCIFLHYRITNPVRNAYALWLISVICEIWFALSWILDQ 319 (1079)
T ss_pred cccccccccccccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHHHHhc
Confidence 22236789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccchhhhHhhhhhccCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhH
Q 003073 320 FPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTF 399 (850)
Q Consensus 320 ~~kw~Pv~R~~~~drL~~r~e~~~~~~~lP~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~ 399 (850)
++||+||+|.||+|||++||++++++++||+|||||+|.||.||||++|+|||||+||+|||++||+|||+|||++++||
T Consensus 320 ~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf 399 (1079)
T PLN02638 320 FPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTF 399 (1079)
T ss_pred cccccccccccCHHHHHHHhccCCCcccCCCccEEEeCCCCccCccHHHHHHHHHHHhhcccccceeEEEecCCchHHHH
Confidence 99999999999999999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHhhhhhHhHHHhhCCCCCCchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccc
Q 003073 400 EALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWV 479 (850)
Q Consensus 400 e~L~Ea~~FA~~WvPFCkk~~IepRaPe~YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~ 479 (850)
++|.||++|||+||||||||+|||||||+||++|.|+++++++|+|++|||+|||||||||+|||+|+++++++|+++|+
T Consensus 400 ~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~a~~~~~p~~~~~ 479 (1079)
T PLN02638 400 EALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVAKAQKVPEEGWI 479 (1079)
T ss_pred HHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCccceeeeeccCCCCCCCCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecC
Q 003073 480 MQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDC 559 (850)
Q Consensus 480 m~dgt~wpg~~~rdhp~~iqV~l~~~G~~d~~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDA 559 (850)
|+|||+||||+++|||+||||+++++|+.|.+|++||+|||||||||||++||+||||||+||||||+|||||||+||||
T Consensus 480 m~dgt~W~g~~~~dHp~IiqVll~~~~~~d~~g~~lP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDC 559 (1079)
T PLN02638 480 MQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDC 559 (1079)
T ss_pred ccCCccCCCCCCCCCHHHHHHHhcCCCccccccccccceEEEecccCCCCCcccccchHHHHHHHhhhccCCCeEeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHhhhcCCCCCcceEEEeccccccCCCccccccchhHHHHhhhhccccCCCCccccccchhhhhhhhc
Q 003073 560 DHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (850)
Q Consensus 560 D~~~~~pdfLr~tv~fF~DP~~G~~v~~VQtPQrF~~id~~Dryan~~~vFfdi~~~glDgiqgp~yvGTGcvfRR~ALy 639 (850)
|||+|||++||++||||+||+.|+++|||||||||+|+|++|||+|+++||||++|+|+||+|||+||||||+|||+|||
T Consensus 560 DmYiNns~alr~AMCf~lDp~~g~~vafVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDGlqGP~YvGTGC~fRR~ALY 639 (1079)
T PLN02638 560 DHYINNSKALREAMCFLMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (1079)
T ss_pred CcccCchHHHHHhhhhhcCcccCCeeEEecCCcccCCCCCCCcccccceeeeccccccccccCCccccccCcceeehhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCcccccCCC-ccccCCcCccCCccccCCCCCCCCCccccchhhhhcccCCCCchhhHHHhhhhHHH
Q 003073 640 GYEPPLKPKHRKPGLLSSLFGGS-RKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLE 718 (850)
Q Consensus 640 G~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (850)
|++||...+.....++| |||++ +++.++.+.+.+.++...++.+.+.+++++++++++.++..++++++++++++.|+
T Consensus 640 G~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1079)
T PLN02638 640 GYEPPIKPKHKKPGFLS-SLCGGSRKKSSKSSKKGSDKKKSGKHVDPTVPVFNLEDIEEGVEGAGFDDEKSLLMSQMSLE 718 (1079)
T ss_pred CcCCccccccccccccc-ccccccccccccccchhhccccccccccccccccccccccccccccccchhhhhhhhhhhhh
Confidence 99998764322222223 45555 33322222222222222344556678888999998888877788888999999999
Q ss_pred HhhcchHHHHHhHhhhcCCCCCCcchhhHHHHhhhhccccccccCccccccceeecccchhHHHHHHHHHCCcEEEEeCC
Q 003073 719 KRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMP 798 (850)
Q Consensus 719 ~~fG~s~~f~~S~l~e~GG~p~~~~~~~~l~eai~v~sC~YE~~T~WG~evGW~y~SITEDi~Tg~rLh~rGwRsvY~~p 798 (850)
++||+|++|++|+++++||.+...+++++|+||+||+||+||++|+||+||||+|+|+|||+.||++||++||||+|++|
T Consensus 719 ~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rLH~rGWrSvY~~P 798 (1079)
T PLN02638 719 KRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMP 798 (1079)
T ss_pred hhccccHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhccCCCccCCchhhhcCeeecceecHHHHHHHHHcCCCcEEecCC
Confidence 99999999999999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCCHHHHHHHHHHHhhhhHHHHHhhcCccccC-----CccccccccC
Q 003073 799 KRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPICCL-----SINEQVHYAS 849 (850)
Q Consensus 799 ~~aaf~G~aP~tls~~lkQR~RWA~G~lQIllsr~~Pl~~G-----~l~~~~~y~~ 849 (850)
.+++|.|+||+|+.+++.||+|||.|++||+++++||+|+| .+.|||+|++
T Consensus 799 ~r~AF~GlAP~~l~d~L~Qr~RWA~G~lqI~fsr~nPl~~G~~~rL~l~QRL~Yl~ 854 (1079)
T PLN02638 799 KRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKWLERFAYVN 854 (1079)
T ss_pred CchHhcCcCCCCHHHHHHHHHHHhhcchheeeccCCccccccCCCCCHHHHHHHHH
Confidence 89999999999999999999999999999999999999964 3679999974
No 2
>PLN02400 cellulose synthase
Probab=100.00 E-value=3.7e-256 Score=2220.51 Aligned_cols=824 Identities=71% Similarity=1.224 Sum_probs=751.0
Q ss_pred CCCCCccccccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccccccccCCCCcccCCCCc
Q 003073 5 GETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREE 84 (850)
Q Consensus 5 ~~~~~k~~~~~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr~kGs~rv~gd~e~ 84 (850)
+++++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+|| ||
T Consensus 24 ~~~g~kp~~~~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~KgsprV~GD-ee 102 (1085)
T PLN02400 24 SDSGPKPLKNLNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRHKGSPRVEGD-ED 102 (1085)
T ss_pred ccccCCCccccCCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccccccCCCCCCcc-cc
Confidence 45667999999999999999999999999999999999999999999999999999999999999999999999999 78
Q ss_pred CCCCCCCCCccCCCccchhhhhhhHHHHhhhhhccCCCCCCC-CCCCCccccCCCCCcccCCccccCCCCCCCccccccC
Q 003073 85 DGDADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDAS-APKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMA 163 (850)
Q Consensus 85 e~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (850)
|||+||+||||+|..+++.+.+++ . |++.+.+ +++|++ +++|+|++||.+++|+++++++|++++
T Consensus 103 edd~DDlenEf~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~----~~~p~lt~g~~~s~ei~~~~~~~~~~~ 168 (1085)
T PLN02400 103 EDDVDDLENEFNYAQGNGKARHQW---------Q-GEDIELSSSSRHES----QPIPLLTHGQPVSGEIPCATPDNQSVR 168 (1085)
T ss_pred cccchhhhhhhccccccccccccc---------c-ccCccccCcccccC----CCCccccCCcccCCCCCCCCCcccccc
Confidence 889999999999964333322221 1 5555544 445552 478999999999999998887777666
Q ss_pred CCC---CCCCCcc---ccCCCCCCCCCccccCCCCCCCCCCCccccccchhhhhhhhccccccccCCCCccccCCCCCCC
Q 003073 164 SPG---VGPGKRI---HYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDID 237 (850)
Q Consensus 164 ~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~y~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (850)
++. .+.|++| ||+|+ ..+++.+.|||+||+++||||||+||||||+||+||+|++.++.+.. ++++|++++
T Consensus 169 ~~~~~~~~~~~~vh~~p~~d~-~~~~~~~~~d~~~~~~~~g~g~~~wkerv~~wk~~~~k~~~~~~~~~--~~~~~g~~~ 245 (1085)
T PLN02400 169 TTSGPLGPAERNANSSPYIDP-RQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQDKNMMQMTNKY--HEGKGGDME 245 (1085)
T ss_pred CCcccccccCCcccccCccCc-ccCCCccccCccccccccccCcHHHHHHHHHHHhhhhhhcccccccc--ccccccCCC
Confidence 653 2456888 69885 33478899999999999999999999999999999998877666644 345445544
Q ss_pred CCCCcccCCcccccccCCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHH
Q 003073 238 ASTDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIF 317 (850)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~pL~rk~~~~~~~~~~yR~~i~~~l~~~~~yl~wRi~~~~~~a~~lWl~~vi~Ei~fa~~wiL 317 (850)
| .+++++|+++|+++++||+||+++++++|++||++++++|+++++||+||+++++.+++|+|+++|+||+||+|+|+|
T Consensus 246 ~-~~~~~~d~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~lv~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~wFaf~Wll 324 (1085)
T PLN02400 246 G-TGSNGDELQMADDARLPMSRVVPIPSSRLTPYRIVIILRLIILGFFLQYRVTHPVKDAYGLWLTSVICEIWFALSWLL 324 (1085)
T ss_pred C-CCCCcccccccccccCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHHHH
Confidence 3 233478899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccccchhhhHhhhhhccCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchh
Q 003073 318 DQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAML 397 (850)
Q Consensus 318 ~q~~kw~Pv~R~~~~drL~~r~e~~~~~~~lP~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~ 397 (850)
+|++||+||+|+||+|||++||++++++++||+|||||+|.||.||||++|+|||||+||+|||++||+|||+|||++++
T Consensus 325 ~q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~L 404 (1085)
T PLN02400 325 DQFPKWYPINRETYLDRLALRYDRDGEPSQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAML 404 (1085)
T ss_pred ccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHH
Confidence 99999999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhHHhhhhhHhHHHhhCCCCCCchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 003073 398 TFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEG 477 (850)
Q Consensus 398 T~e~L~Ea~~FA~~WvPFCkk~~IepRaPe~YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~ 477 (850)
||++|.||++|||+||||||||+|||||||+||++|.|+++++++|+|++|||+|||||||||+|||+|+++++++|+++
T Consensus 405 Tf~Al~Eaa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~~~~~~~~~~~ 484 (1085)
T PLN02400 405 TFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKIPEEG 484 (1085)
T ss_pred HHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCccceeeeeccCCCCCCCCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEe
Q 003073 478 WVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNL 557 (850)
Q Consensus 478 w~m~dgt~wpg~~~rdhp~~iqV~l~~~G~~d~~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~il 557 (850)
|+|+|||+||||+++|||+|||||++++|+.|.+|++||+|||||||||||++||+||||||+|+||||||||+|||++|
T Consensus 485 ~~m~dgt~W~g~~~~dHp~iIqVll~~~~~~d~~g~~LP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~ILNl 564 (1085)
T PLN02400 485 WTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNV 564 (1085)
T ss_pred cccccCccCCCCCCCCCchhhhhhhcCCCCcccccccCceeEEEeccCCCCCCcchhhhhhHHHHHHhhhhcCCceEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcHHHHHHHHhhhcCCCCCcceEEEeccccccCCCccccccchhHHHHhhhhccccCCCCccccccchhhhhhh
Q 003073 558 DCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTA 637 (850)
Q Consensus 558 DAD~~~~~pdfLr~tv~fF~DP~~G~~v~~VQtPQrF~~id~~Dryan~~~vFfdi~~~glDgiqgp~yvGTGcvfRR~A 637 (850)
|||||+|||+++|++||||+||+.|+++||||+||||+|+|++|||+|+|+||||++|+|+||+|||+||||||+|||+|
T Consensus 565 DCDmY~Nns~a~r~AMCf~lD~~~g~~~afVQFPQrF~gi~~~D~Y~n~~~vffdi~~~GldGlqGP~YvGTGC~frR~a 644 (1085)
T PLN02400 565 DCDHYFNNSKALKEAMCFMMDPAIGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQA 644 (1085)
T ss_pred ccccccCCchhHHhhhhheeccCCCceeEEEeCCcccCCCCCCCCcccceeEEeeccccccccCCCccccccCcceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCCCCCCcccccCCCccccCCcCccCCccccCCCCCCCCCccccchhhhhcccCCCCchhhHHHhhhhHH
Q 003073 638 LYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSL 717 (850)
Q Consensus 638 LyG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (850)
|||++||...+.....+.|+|||++|+++++.+....++++..+..+++.++++++++++++++ +++|++++++++.|
T Consensus 645 LYG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l 722 (1085)
T PLN02400 645 LYGYDPVLTEEDLEPNIIVKSCCGSRKKGKGSKKYNIDKKRAMKRTESNVPIFNMEDIEEGVEG--YDDERSLLMSQKSL 722 (1085)
T ss_pred eccCCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccchhhhhhhhhhh
Confidence 9999998765432222323356677766443332222334444566778899999999999998 78888889999999
Q ss_pred HHhhcchHHHHHhHhhhcCCCCCCcchhhHHHHhhhhccccccccCccccccceeecccchhHHHHHHHHHCCcEEEEeC
Q 003073 718 EKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCM 797 (850)
Q Consensus 718 ~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~l~eai~v~sC~YE~~T~WG~evGW~y~SITEDi~Tg~rLh~rGwRsvY~~ 797 (850)
+++||+|++|++|++++.||.+...+++++|+||+|||||+||++|+||+||||+|+|+|||+.||++||++||||+|++
T Consensus 723 ~~~fG~S~~fi~S~~~~~~~~~~~~~~~~ll~eA~~V~sC~YE~~T~WG~evGwiYGSvTED~~TG~~LH~rGWrSvY~~ 802 (1085)
T PLN02400 723 EKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCM 802 (1085)
T ss_pred hhhccccHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhccCCccCCchhhhhCeeccceechHHHHHHHHccCCceEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccCCCCHHHHHHHHHHHhhhhHHHHHhhcCccccC-----CccccccccC
Q 003073 798 PKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPICCL-----SINEQVHYAS 849 (850)
Q Consensus 798 p~~aaf~G~aP~tls~~lkQR~RWA~G~lQIllsr~~Pl~~G-----~l~~~~~y~~ 849 (850)
|.+++|.|+||+|+.+++.||+|||.|++|||++++||+|+| .+.|||+|++
T Consensus 803 p~r~af~GlAP~~l~d~L~Qr~RWA~G~lqI~~sr~nPl~~G~~~~L~l~QRL~Yl~ 859 (1085)
T PLN02400 803 PPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYIN 859 (1085)
T ss_pred CCcHhhcCcCCCCHHHHHHHHHHHhhcchheeeccCCccccccCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999964 4679999974
No 3
>PLN02436 cellulose synthase A
Probab=100.00 E-value=9.5e-253 Score=2184.42 Aligned_cols=830 Identities=66% Similarity=1.154 Sum_probs=755.6
Q ss_pred CCCCCccccccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccccccccCCCCcccCCCCc
Q 003073 5 GETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREE 84 (850)
Q Consensus 5 ~~~~~k~~~~~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr~kGs~rv~gd~e~ 84 (850)
+++++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+|| ||
T Consensus 24 ~~~~~k~~~~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~kgs~~~~~d-~e 102 (1094)
T PLN02436 24 EIARIRSVQELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVEGD-EE 102 (1094)
T ss_pred cccCCCCccccCCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhccCCCCcCCc-cc
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999 77
Q ss_pred CCCCCCCCCccCCCccchhhhhhhHHHHhhhhhccCCCCCCCCCCCCc--cc--cCCCCCcccCCccccCCCCCCCcccc
Q 003073 85 DGDADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDN--EV--SHNHIPRLTGGQEVSGELSAASPEHL 160 (850)
Q Consensus 85 e~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (850)
||++||+||||||.. ++.+.++++|+|++++|++|++.+.+...+.. +. ..+++|++++|| +++|++ +++|+
T Consensus 103 e~~~dd~e~ef~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~ 178 (1094)
T PLN02436 103 EDDIDDLENEFDYGN-NGLDPEQVAEAMLSSRLNTGRHSNVSGIATPSELDSAPPGSQIPLLTYGE-EDVEIS--SDRHA 178 (1094)
T ss_pred cccchhhhhhhcCcc-cccchHHHHHHHhhhhcccCccccccccccccccccCCCcCCCcccccCc-ccCccC--Ccccc
Confidence 888999999999973 55556788999999999999998866443322 12 235789999988 577776 35577
Q ss_pred ccCCCCCCCCCcc---ccCCCCCCCCCccccCCCCCCCCCCCccccccchhhhhhhhccccccccCCCCccccCCCCCCC
Q 003073 161 SMASPGVGPGKRI---HYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDID 237 (850)
Q Consensus 161 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~y~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (850)
+++|+..+.|||| ||+|. ..+++.+.|||+||+++||||||+||||||+||+||++++ +++++. +++++++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~wkerv~~wk~kq~~~~-~~~~~~--~~~~~~~~~ 254 (1094)
T PLN02436 179 LIVPPSTGHGNRVHPMPFPDS-SASLQPRPMVPQKDLAVYGYGSVAWKDRMEEWKKKQNEKL-QVVKHE--GGNDGGNND 254 (1094)
T ss_pred cccCCcccccccccccccccc-cccCCCccCCccccccccccCcHHHHHHHHHHHhhhhhcc-cccccc--cccccCCCC
Confidence 7678777788999 48774 2347889999999999999999999999999999998544 444432 345555555
Q ss_pred CCCCcccCCcccccccCCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHH
Q 003073 238 ASTDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIF 317 (850)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~pL~rk~~~~~~~~~~yR~~i~~~l~~~~~yl~wRi~~~~~~a~~lWl~~vi~Ei~fa~~wiL 317 (850)
| ++.+++|++++|++++||+||+++++++|+|||++++++|+++++||+||+++++.+++|+|+++|+||+||+|+|+|
T Consensus 255 ~-~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~Wl~s~~cE~WFaf~Wll 333 (1094)
T PLN02436 255 G-DELDDPDLPMMDEGRQPLSRKLPIPSSKINPYRMIIILRLVILGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWIL 333 (1094)
T ss_pred C-CCCCCcccccccccCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHHHH
Confidence 3 233467888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccccchhhhHhhhhhccCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchh
Q 003073 318 DQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAML 397 (850)
Q Consensus 318 ~q~~kw~Pv~R~~~~drL~~r~e~~~~~~~lP~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~ 397 (850)
+|++||+||+|.||+|||++||++++++++||+|||||+|.||.||||++|+|||||+||+|||++||+|||+|||++++
T Consensus 334 ~Q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~L 413 (1094)
T PLN02436 334 DQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAML 413 (1094)
T ss_pred ccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHH
Confidence 99999999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhHHhhhhhHhHHHhhCCCCCCchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 003073 398 TFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEG 477 (850)
Q Consensus 398 T~e~L~Ea~~FA~~WvPFCkk~~IepRaPe~YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~ 477 (850)
||++|.||++|||+||||||||+|||||||+||++|.|++++|++|+|++|||+|||||||||+|||+|+++++++|+++
T Consensus 414 Tf~AL~EAa~FAk~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l~~~~~~vp~~~ 493 (1094)
T PLN02436 414 TFEALSETSEFARKWVPFCKKFSIEPRAPEWYFSQKMDYLKNKVHPAFVRERRAMKREYEEFKVKINALVATAQKVPEDG 493 (1094)
T ss_pred HHHHHHHHHHHHHhhcccccccCCCcCCHHHHhhccCCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCccceeeeeccCCCCCCCCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEe
Q 003073 478 WVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNL 557 (850)
Q Consensus 478 w~m~dgt~wpg~~~rdhp~~iqV~l~~~G~~d~~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~il 557 (850)
|+|+|||+||||+++|||+||||||+++|+.|.+|++||+|||||||||||++||+||||||||+||||+|||||||++|
T Consensus 494 ~~m~dgt~W~g~~~~dHp~IIqVll~~~~~~d~~g~~LP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaP~ILNL 573 (1094)
T PLN02436 494 WTMQDGTPWPGNNVRDHPGMIQVFLGHSGVRDVEGNELPRLVYVSREKRPGFDHHKKAGAMNSLIRVSAVLSNAPYLLNV 573 (1094)
T ss_pred hhhccCccCCCCCCCCCccceEEEecCCCCcccccccCceEEEEecccCCCCCcchhhhhhhhhhhhheeecCCceEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcHHHHHHHHhhhcCCCCCcceEEEeccccccCCCccccccchhHHHHhhhhccccCCCCccccccchhhhhhh
Q 003073 558 DCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTA 637 (850)
Q Consensus 558 DAD~~~~~pdfLr~tv~fF~DP~~G~~v~~VQtPQrF~~id~~Dryan~~~vFfdi~~~glDgiqgp~yvGTGcvfRR~A 637 (850)
|||||+|||+++|++||||+||+.|+++||||+||||+|+|+||||+|+|+||||++|+|+||+|||+||||||+|||+|
T Consensus 574 DCDmYiNns~a~r~AMCfllD~~~g~~~afVQFPQrF~gi~k~D~Y~n~~~vffdi~~~GlDGlqGP~YvGTGC~frR~a 653 (1094)
T PLN02436 574 DCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQA 653 (1094)
T ss_pred ccccccCchHHHHHhhhhhcCCccCCeeEEEcCCcccCCCCCCCcccccceEeeeccccccccCCCccccccCceeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCCCCCC-----cccccCCCccccCCcCccCCccccCCCCCCCCCccccchhhhhcccCCCCchhhHHHh
Q 003073 638 LYGYEPPLKPKHRKPGL-----LSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLM 712 (850)
Q Consensus 638 LyG~~p~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (850)
|||++||...+.+...+ +|+|||++|+++++.++...+ ..++.+...+++++.++++++++ +++|++..+
T Consensus 654 LYG~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 728 (1094)
T PLN02436 654 LYGYDAPKKKKPPGKTCNCWPKWCCLCCGSRKKKKKKKSKEKK---KKKNREASKQIHALENIEEGIEG--SNNEKSSET 728 (1094)
T ss_pred eeccCCccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccc--ccchhhhhh
Confidence 99999997665443322 234566777664433221111 13344566788999999999988 778888899
Q ss_pred hhhHHHHhhcchHHHHHhHhhhcCCCCCCcchhhHHHHhhhhccccccccCccccccceeecccchhHHHHHHHHHCCcE
Q 003073 713 SQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWR 792 (850)
Q Consensus 713 ~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~l~eai~v~sC~YE~~T~WG~evGW~y~SITEDi~Tg~rLh~rGwR 792 (850)
+++.|+++||+|++|++|+++++||.+...+++++|+||+|||||+||++|+||+||||+|+|+|||+.||++||++|||
T Consensus 729 ~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGwiYGSvTEDv~TG~rLH~rGWr 808 (1094)
T PLN02436 729 PQLKLEKKFGQSPVFVASTLLENGGVPRNASPASLLREAIQVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHCHGWR 808 (1094)
T ss_pred hhhhHHhhhcccHHHHHHHHHhhcCCCCCCCcHHHHHHHHHhhcCCCcccChhhHhhCeeccceecHHHHHHHHHcCCCc
Confidence 99999999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCcccccCCCCHHHHHHHHHHHhhhhHHHHHhhcCccccC-----CccccccccC
Q 003073 793 SIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPICCL-----SINEQVHYAS 849 (850)
Q Consensus 793 svY~~p~~aaf~G~aP~tls~~lkQR~RWA~G~lQIllsr~~Pl~~G-----~l~~~~~y~~ 849 (850)
|+|++|.+++|.|+||+|+.+++.||+|||.|++|||++++||||+| .+.|||+|++
T Consensus 809 SvY~~P~r~AF~GlAP~~L~d~L~Qr~RWA~G~lQIffsr~nPl~~g~~~~L~l~QRL~Yl~ 870 (1094)
T PLN02436 809 SVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYIN 870 (1094)
T ss_pred eEeCCCCchhhcCcCCCCHHHHHHHHHHHhhcceeeeeccCCcchhcccccCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999964 3679999974
No 4
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=100.00 E-value=1.1e-240 Score=2084.38 Aligned_cols=775 Identities=68% Similarity=1.186 Sum_probs=699.6
Q ss_pred cccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccccccccCCCCcccCCCCcCCCCCCCC
Q 003073 13 KNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREEDGDADDGA 92 (850)
Q Consensus 13 ~~~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr~kGs~rv~gd~e~e~~~dd~~ 92 (850)
+..++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+||||||+++||+|
T Consensus 11 ~~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~~~~~~~~d~~~~~~~dd~~ 90 (1044)
T PLN02915 11 QSADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHKGCPRVEGDDEEGNDMDDFE 90 (1044)
T ss_pred cCCCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCccCCccccccchhhh
Confidence 67799999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred CccCCCccchhhhhhhHHHHhhhhhccCCCCCCCCCCCCccccCCCCCcccCCccccCCCCCCCccccccCCCCCCCCCc
Q 003073 93 SDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKR 172 (850)
Q Consensus 93 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (850)
|||+|..+++. +.|++++|++|++.+.+++.. ++++|++++ +++++
T Consensus 91 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~----~~~~~------------------- 136 (1044)
T PLN02915 91 DEFQIKSPQDH------EPVHQNVFAGSENGDYNAQQW-----RPGGPAFSS----TGSVA------------------- 136 (1044)
T ss_pred hhhcccccccc------chhhhhhccCCCCcccccccc-----CCCCccccC----CCCcC-------------------
Confidence 99999542221 228899999998866432111 134555554 12221
Q ss_pred cccCCCCCCCCCccccCCCCCCCCCCCccccccchhhhhhhhccccccccCCCCccccCCCCCCCCCCCcccCCcccccc
Q 003073 173 IHYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDASTDVLVDDSLLNDE 252 (850)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~y~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (850)
.+.|+|+|| |||||+||||||+||+||+ |++.+.+. . + +.+ +..+++|++++++
T Consensus 137 ------------~~~~~~~~~----~~g~~~wk~r~~~wk~~~~-~~~~~~~~-~--~----~~~--~~~~~~~~~~~~~ 190 (1044)
T PLN02915 137 ------------GKDLEAERE----GYGNAEWKDRVDKWKTRQE-KRGLVNKD-D--S----DDG--DDKGDEEEYLLAE 190 (1044)
T ss_pred ------------CCCcCcccc----CcCCHHHHHHHHHHHhhhh-hhcccccc-c--c----CCC--CCCCCcccccccc
Confidence 135999988 9999999999999999997 34444331 1 1 111 1223678899999
Q ss_pred cCCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHhhhccccccccchhh
Q 003073 253 ARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLPVNRETYL 332 (850)
Q Consensus 253 ~~~pL~rk~~~~~~~~~~yR~~i~~~l~~~~~yl~wRi~~~~~~a~~lWl~~vi~Ei~fa~~wiL~q~~kw~Pv~R~~~~ 332 (850)
+++||+||+++++++|+|||++++++|+++++||+||+++++.+++|+|+++|+||+||+|+|+|+|++||+||+|.||+
T Consensus 191 ~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~ 270 (1044)
T PLN02915 191 ARQPLWRKVPIPSSKINPYRIVIVLRLVILCFFFRFRILTPAYDAYPLWLISVICEIWFALSWILDQFPKWFPINRETYL 270 (1044)
T ss_pred cCCCceEEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCcCCCchHHHHHHHHHHHHHHHHHHHccCccccccccccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhhccCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhh
Q 003073 333 DRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKW 412 (850)
Q Consensus 333 drL~~r~e~~~~~~~lP~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~W 412 (850)
|||++||++++++++||+|||||+|.||.||||++|+|||||+||+|||++||+|||+|||++++||++|.||++|||+|
T Consensus 271 drL~~r~e~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FAk~W 350 (1044)
T PLN02915 271 DRLSMRFERDGEPNRLAPVDVFVSTVDPLKEPPIITANTVLSILAVDYPVDKVSCYVSDDGASMLLFDTLSETAEFARRW 350 (1044)
T ss_pred HHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHhHHHHHHHHHHHHHhh
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHhhCCCCCCchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCC
Q 003073 413 VPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTR 492 (850)
Q Consensus 413 vPFCkk~~IepRaPe~YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~r 492 (850)
|||||||+|||||||+||++|.|+++++++|+|++|||+|||||||||+|||+|+++++++|+++|+|+|||+||||+++
T Consensus 351 vPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l~~~~~~~~~~~~~m~dgt~W~g~~~~ 430 (1044)
T PLN02915 351 VPFCKKHNIEPRAPEFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNNTR 430 (1044)
T ss_pred cchhhhcCCCcCCHHHHhccCCCccccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccccCCccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccceeeeeccCCCCCCCCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHH
Q 003073 493 DHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREA 572 (850)
Q Consensus 493 dhp~~iqV~l~~~G~~d~~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~t 572 (850)
|||+||||||+++|+.|.+|++||+|||||||||||++||+||||||||+||||||||+|||++||||||+|||+++|++
T Consensus 431 dHp~IIqVll~~~~~~d~~g~~lP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~iLNlDCDmY~Nns~a~r~A 510 (1044)
T PLN02915 431 DHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREA 510 (1044)
T ss_pred CCccceEEeecCCCCcccccCccceeEEEecccCCCCCcchhhhhhhhHhhhhheeecCcEEEeeccccccCcchhhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCCcceEEEeccccccCCCccccccchhHHHHhhhhccccCCCCccccccchhhhhhhhcCCCCCCCCCCCCC
Q 003073 573 MCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKP 652 (850)
Q Consensus 573 v~fF~DP~~G~~v~~VQtPQrF~~id~~Dryan~~~vFfdi~~~glDgiqgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~ 652 (850)
||||+||+.|+++||||+||||+|+|+||||+|+|+||||++|+|+||+|||+||||||+|||+||||++||...+.++.
T Consensus 511 MCf~lD~~~g~~~afVQFPQrF~gidk~D~Y~n~~~Vffdi~~~GldGlqGP~YvGTGCffrR~aLYG~~pp~~~~~~~~ 590 (1044)
T PLN02915 511 MCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNVVFFDINMKGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKM 590 (1044)
T ss_pred ceeeecCCCCCeeEEEeCCcccCCCCCCCCcCccceEEEeeecccccccCCcccccCCceeeeeeecCcCCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999976655554
Q ss_pred CC-----cccccCCCccccCCcCcc-CC---------cccc------------CCCCCCCCCccccchhhhhcccCCCCc
Q 003073 653 GL-----LSSLFGGSRKKNSKSSKK-GS---------DKKK------------SSKHVDPTVPIFSLEDIEEGVEGAGFD 705 (850)
Q Consensus 653 ~~-----~~~~~~~~~~~~~~~~~~-~~---------~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (850)
+| .|+|||++++++++..++ .. .+++ .....+++.+++++++++++++| ++
T Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 668 (1044)
T PLN02915 591 TCDCWPSWCCCCCGGGRRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKKSQAVFDLEEIEEGLEG--YD 668 (1044)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cc
Confidence 43 234566666654332111 00 0000 01133456788999999999999 55
Q ss_pred h-hhHHHhhhhHHHHhhcchHHHHHhHhhhcCCCCCCcchhhHHHHhhhhccccccccCccccccceeecccchhHHHHH
Q 003073 706 D-EKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGF 784 (850)
Q Consensus 706 ~-~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~l~eai~v~sC~YE~~T~WG~evGW~y~SITEDi~Tg~ 784 (850)
+ |++++++++.|+|+||+|++|++|++++.+|.+...+++++|+||+|||||+||++|+||+||||+|+|+|||+.||+
T Consensus 669 ~~~~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~ 748 (1044)
T PLN02915 669 ELEKSSLMSQKNFEKRFGQSPVFIASTLMEDGGLPEGTNPAALIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGF 748 (1044)
T ss_pred chhhhhhhhhhhhhhhcCCcHHHHHHHHHhhcCCCCCCCcHHHHHHHHhccccCCCccCchhHhhCccccccccHHHHHH
Confidence 4 888899999999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred HHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHHhhhhHHHHHhhcCccccC-----CccccccccC
Q 003073 785 KMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPICCL-----SINEQVHYAS 849 (850)
Q Consensus 785 rLh~rGwRsvY~~p~~aaf~G~aP~tls~~lkQR~RWA~G~lQIllsr~~Pl~~G-----~l~~~~~y~~ 849 (850)
+||++||||+|++|.+++|.|+||+|+.++++||+|||.|++|||++++||||++ .+.|||+|++
T Consensus 749 rLH~rGWrSvY~~p~r~AF~GlAP~~L~d~L~Qr~RWA~G~lqIf~sr~~Pl~~g~~~~L~l~QRL~Yl~ 818 (1044)
T PLN02915 749 KMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFMSRHCPLWYAYGGKLKWLERLAYIN 818 (1044)
T ss_pred HHHccCCcEEeeCCCcHHhcCcCCCCHHHHHHHHHHHhhhHHHHHHhccCCcccccCCCCCHHHHHHHHH
Confidence 9999999999999989999999999999999999999999999999999999952 4679999974
No 5
>PLN02189 cellulose synthase
Probab=100.00 E-value=3e-235 Score=2037.92 Aligned_cols=781 Identities=69% Similarity=1.193 Sum_probs=709.4
Q ss_pred CCCCccccccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccccccccCCCCcccCCCCcC
Q 003073 6 ETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREED 85 (850)
Q Consensus 6 ~~~~k~~~~~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr~kGs~rv~gd~e~e 85 (850)
++++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+|| |||
T Consensus 23 ~~~~k~~~~~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~kgs~~v~gd-~ee 101 (1040)
T PLN02189 23 HEEPKPLRNLDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLKGSPRVEGD-DDE 101 (1040)
T ss_pred ccCCCCcccccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhccCCCCcCCc-ccc
Confidence 3567999999999999999999999999999999999999999999999999999999999999999999999999 678
Q ss_pred CCCCCCCCccCCCccchhhhhhhHHHHhhhhhccCCCCCCCCCCCCccccCCCCCcccCCc--cccCCCCCCCc--cccc
Q 003073 86 GDADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQ--EVSGELSAASP--EHLS 161 (850)
Q Consensus 86 ~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~ 161 (850)
|++||+||||+|.. ++.+.++++|+|++++|++|++.+... +.+++|++++|+ .+++|++..|+ +|+.
T Consensus 102 ~~~dd~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (1040)
T PLN02189 102 EDIDDIEHEFNIDD-EQDKNKHITEAMLHGKMSYGRGPDDDE-------NNQFPPVITGVRSRPVSGEFPIGSGYGHGEQ 173 (1040)
T ss_pred ccchhhhhhccccc-cccchhHHHHHHhhhhcccCCCcccCC-------CcCCCcccccCccccccCCcCcccccccccc
Confidence 88999999999965 444567889999999999999876432 224678999987 37788873222 3444
Q ss_pred cCCCCCCCCCcc---ccCCCCCCCCCccccCCCCCCCCCCCccccccchhhhhhhhccccccccCCCCccccCCCCCCCC
Q 003073 162 MASPGVGPGKRI---HYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDA 238 (850)
Q Consensus 162 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~y~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (850)
++++. .||+| ||++ .+.+.|||+||++ ||||||+||+||++ .+++
T Consensus 174 ~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~--------wk~rv~~wk~~~~~--------------~~~~--- 221 (1040)
T PLN02189 174 MLSSS--LHKRVHPYPVSE-----PGSAKWDEKKEGG--------WKERMDDWKMQQGN--------------LGPD--- 221 (1040)
T ss_pred ccCCc--ccCccCcccccC-----CCcccCCcccccc--------HHHHHHHHHhhccc--------------CCCC---
Confidence 55555 48998 4777 5678999999975 99999999999951 1111
Q ss_pred CCCcccCCcccccccCCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHh
Q 003073 239 STDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFD 318 (850)
Q Consensus 239 ~~~~~~~~~~~~~~~~~pL~rk~~~~~~~~~~yR~~i~~~l~~~~~yl~wRi~~~~~~a~~lWl~~vi~Ei~fa~~wiL~ 318 (850)
++.+++|.++++++++||+||+++++++|+|||++++++|+++++||+||+++++.+++|+|+++|+||+||+|+|+|+
T Consensus 222 -~~~~~~d~~~~~~~~~pL~~~~~~~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~W~~s~~~E~wFaf~Wll~ 300 (1040)
T PLN02189 222 -PDDYDADMALIDEARQPLSRKVPIASSKVNPYRMVIVARLVVLAFFLRYRILHPVHDAIGLWLTSIICEIWFAVSWILD 300 (1040)
T ss_pred -CCCCchhhhhcccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhcCcCccchHHHHHHHHHHHHHHHHHHHc
Confidence 2234677888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccccchhhhHhhhhhccCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhh
Q 003073 319 QFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLT 398 (850)
Q Consensus 319 q~~kw~Pv~R~~~~drL~~r~e~~~~~~~lP~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T 398 (850)
|++||+||+|.||+|||++||++++++++||+|||||+|.||.||||++|+|||||+||+|||++||+|||+|||++++|
T Consensus 301 q~~kw~Pv~R~t~~drL~~r~~~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LT 380 (1040)
T PLN02189 301 QFPKWFPIDRETYLDRLSLRYEREGEPNMLSPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYVSDDGASMLT 380 (1040)
T ss_pred cCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHHH
Confidence 99999999999999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHhhhhhHhHHHhhCCCCCCchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Q 003073 399 FEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGW 478 (850)
Q Consensus 399 ~e~L~Ea~~FA~~WvPFCkk~~IepRaPe~YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w 478 (850)
|++|.||++||++||||||||+|||||||+||++|.|+++++++|+|++|||+|||||||||+|||+|+++++++|+++|
T Consensus 381 f~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~kvRI~~l~a~~~~~p~~~~ 460 (1040)
T PLN02189 381 FEALSETAEFARKWVPFCKKFSIEPRAPEFYFSLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVAKAQKVPPEGW 460 (1040)
T ss_pred HHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCccceeeeeccCCCCCCCCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEec
Q 003073 479 VMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLD 558 (850)
Q Consensus 479 ~m~dgt~wpg~~~rdhp~~iqV~l~~~G~~d~~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilD 558 (850)
.|+||++|||++++|||+||||+++++|+.|.+|++||+|||||||||||++||+||||||+||||||++||||||+|||
T Consensus 461 ~m~dGt~W~g~~~~dHp~IiQVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLD 540 (1040)
T PLN02189 461 IMQDGTPWPGNNTRDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLD 540 (1040)
T ss_pred eeccCccCCCCCCCCCHHHHHHHhcCCCCccccccccceeEEEeccCCCCCCcccchhhHHHHHHHhhhccCCCeEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHhhhcCCCCCcceEEEeccccccCCCccccccchhHHHHhhhhccccCCCCccccccchhhhhhhh
Q 003073 559 CDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTAL 638 (850)
Q Consensus 559 AD~~~~~pdfLr~tv~fF~DP~~G~~v~~VQtPQrF~~id~~Dryan~~~vFfdi~~~glDgiqgp~yvGTGcvfRR~AL 638 (850)
||||+|+|++|+++||||+||+.|+++|||||||+|+|++++|||+|+++||||++|+|+||+|||+||||||+|||+||
T Consensus 541 CDmY~Nns~alr~AMCfflDp~~g~~vAfVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDGlqGP~YvGTGC~fRR~AL 620 (1040)
T PLN02189 541 CDHYINNSKAVREAMCFLMDPQIGRKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQAL 620 (1040)
T ss_pred CccccCchHHHHHhhhhhcCCccCceeEEEeCccccCCCCCCCccCCccceeeeeeecccccCCCccccccCceeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCcccccCCCccccCCcCccCCccccCCCCCCCCCccccchhhhhcccCCCCchhhHHHhhhhHHH
Q 003073 639 YGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLE 718 (850)
Q Consensus 639 yG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (850)
||++||.....+..++|++|||++++++++.+. .+ +. ..+++++ ++++++.++++++++
T Consensus 621 yG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----------~~-------~~~~~~~--~~~~~~~~~~~~~~~ 679 (1040)
T PLN02189 621 YGYDPPKGPKRPKMVTCDCCPCFGRRKKKHAKN-GL-----------NG-------EVAALGG--MESDKEMLMSQMNFE 679 (1040)
T ss_pred eccCcccccccccccccchhhhccccccccccc-cc-----------cc-------ccccccc--cchhhhhhhhhhhhH
Confidence 999998776666666655556665544221110 00 00 0012222 445666778899999
Q ss_pred HhhcchHHHHHhHhhhcCCCCCCcchhhHHHHhhhhccccccccCccccccceeecccchhHHHHHHHHHCCcEEEEeCC
Q 003073 719 KRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMP 798 (850)
Q Consensus 719 ~~fG~s~~f~~S~l~e~GG~p~~~~~~~~l~eai~v~sC~YE~~T~WG~evGW~y~SITEDi~Tg~rLh~rGwRsvY~~p 798 (850)
++||+|.+|++|++.+.+|.+..++++++|+||++|+||+||++|+||+||||+|+|+|||+.||++||++||||+|++|
T Consensus 680 ~~fG~S~~fi~S~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTED~~TG~rlH~rGWrSvY~~p 759 (1040)
T PLN02189 680 KKFGQSAIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTDWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMP 759 (1040)
T ss_pred hhhccchhhhhhhhhhhcCCCCCCCcHHHHHHHHHhhccccccCCchhhccCeeccccccHHHHHHHHHccCCceEecCC
Confidence 99999999999999999999888899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCCHHHHHHHHHHHhhhhHHHHHhhcCccccC------CccccccccC
Q 003073 799 KRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPICCL------SINEQVHYAS 849 (850)
Q Consensus 799 ~~aaf~G~aP~tls~~lkQR~RWA~G~lQIllsr~~Pl~~G------~l~~~~~y~~ 849 (850)
.+++|.|+||+|+.+++.||+|||.|++|||++++|||++| .+.|||+|++
T Consensus 760 ~r~AF~GlAP~~L~~~L~Qr~RWA~G~lqI~~sr~nPl~~g~~~~~L~l~QRL~Yl~ 816 (1040)
T PLN02189 760 KRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPLLYGYKGGNLKWLERFAYVN 816 (1040)
T ss_pred CcHHhcCcCCCCHHHHHHHHHHHhhhhHHHhhccCCccccccCCCCCCHHHHHHHHH
Confidence 89999999999999999999999999999999999999963 3569999974
No 6
>PLN02195 cellulose synthase A
Probab=100.00 E-value=8.5e-224 Score=1933.33 Aligned_cols=743 Identities=66% Similarity=1.152 Sum_probs=658.8
Q ss_pred cccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccccccccCCCCcccCCCCcCCCCCCCC
Q 003073 13 KNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREEDGDADDGA 92 (850)
Q Consensus 13 ~~~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr~kGs~rv~gd~e~e~~~dd~~ 92 (850)
-++++|+||||||+||+++|||+|||||||+|||||||||||||||||+||||||||| ||+++||+|
T Consensus 2 ~~~~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk-------------~~~~~~d~~ 68 (977)
T PLN02195 2 MESGAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD-------------AENVFDDVE 68 (977)
T ss_pred CcCCCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc-------------cccccchhh
Confidence 3568999999999999999999999999999999999999999999999999999998 256788999
Q ss_pred CccCCCccchhhhhhhHHHHhhhhhccCCCCCCCCCCCCccccCCCCCcccCCccccCCCCCCCccccccCCCCCCCCCc
Q 003073 93 SDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKR 172 (850)
Q Consensus 93 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (850)
|||+-+ .+++ .++|++|++.+ .+.+++|++++ . ++|
T Consensus 69 ~~~~~~------~~~~-----~~~~~~~~~~~---------~~~~~~~~~~~-~--~~~--------------------- 104 (977)
T PLN02195 69 TKHSRN------QSTM-----ASHLNDTQDVG---------IHARHISSVST-V--DSE--------------------- 104 (977)
T ss_pred hhhccc------hhhh-----hhhcccCcCCC---------CCCcccccccc-C--CCc---------------------
Confidence 998421 2232 36777776532 11122333332 0 111
Q ss_pred cccCCCCCCCCCccccCCCCCCCCCCCccccccchhhhhhhhccccccccCCCCccccCCCCCCCCCCCcccCCcccccc
Q 003073 173 IHYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDASTDVLVDDSLLNDE 252 (850)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~y~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (850)
+. | +|||++||||||+||.||+|++.++.+... .++ +++ ++.+++|+++ ||
T Consensus 105 ---------------~~---~----~~~~~~wk~r~~~wk~~~~~~~~~~~~~~~-~~~---~~~--~~~~~~~~~~-~~ 155 (977)
T PLN02195 105 ---------------LN---D----EYGNPIWKNRVESWKDKKNKKKKSAKKKEA-HKA---QIP--PEQQMEEKPS-AD 155 (977)
T ss_pred ---------------cc---C----ccCCHHHHHHHHHHHHhhhhhccccccccc-ccc---CCC--CccCCccccc-cc
Confidence 11 1 399999999999999999888776655322 222 222 2334677886 99
Q ss_pred cCCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHhhhccccccccchhh
Q 003073 253 ARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLPVNRETYL 332 (850)
Q Consensus 253 ~~~pL~rk~~~~~~~~~~yR~~i~~~l~~~~~yl~wRi~~~~~~a~~lWl~~vi~Ei~fa~~wiL~q~~kw~Pv~R~~~~ 332 (850)
.++||+||+++++++|+|||++++++|+++++||+||+++++.+++|+|+++|+||+||+|+|+|+|++||+||+|.||+
T Consensus 156 ~~~pL~~~~~i~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~ 235 (977)
T PLN02195 156 AYEPLSRVIPIPRNKLTPYRAVIIMRLIILGLFFHYRITNPVDSAFGLWLTSVICEIWFAFSWVLDQFPKWSPINRETYI 235 (977)
T ss_pred ccCCceEEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHhcccccccccceECH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhhccCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhh
Q 003073 333 DRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKW 412 (850)
Q Consensus 333 drL~~r~e~~~~~~~lP~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~W 412 (850)
|||++||++++++++||+|||||+|.||.||||++|+|||||+||+|||++||+|||+|||++++||++|.||++|||+|
T Consensus 236 drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~W 315 (977)
T PLN02195 236 DRLSARYEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLVETAEFARKW 315 (977)
T ss_pred HHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhh
Confidence 99999999988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHhhCCCCCCchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCC
Q 003073 413 VPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTR 492 (850)
Q Consensus 413 vPFCkk~~IepRaPe~YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~r 492 (850)
|||||||+|||||||+||++|.|+++++++|+|++|||+|||||||||+|||+|+++++++|+++|+|+|||+|||++++
T Consensus 316 vPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~k~RIe~~~~~~~~~~~~~~~m~d~t~W~g~~~~ 395 (977)
T PLN02195 316 VPFCKKYSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEYKVRVNALVAKAQKTPEEGWTMQDGTPWPGNNTR 395 (977)
T ss_pred cccccccCCCcCCHHHHhccCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccccccCCccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccceeeeeccCCCCCCCCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHH
Q 003073 493 DHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREA 572 (850)
Q Consensus 493 dhp~~iqV~l~~~G~~d~~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~t 572 (850)
|||+||||||+++|+.|.+|++||+|||||||||||++||+||||||+|+||||++||||||++||||||+|+|++|+++
T Consensus 396 dHp~IIqVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGamNallrvSavmTNap~il~lDcDmy~n~s~~lr~A 475 (977)
T PLN02195 396 DHPGMIQVFLGETGARDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREA 475 (977)
T ss_pred CCcchhhhhccCCCCcccccccCceeEEEeccCCCCCCcccccchhHHHHHHhhhccCCCeEEEecCccccCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCCcceEEEeccccccCCCccccccchhHHHHhhhhccccCCCCccccccchhhhhhhhcCCCCCCCCCCCCC
Q 003073 573 MCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKP 652 (850)
Q Consensus 573 v~fF~DP~~G~~v~~VQtPQrF~~id~~Dryan~~~vFfdi~~~glDgiqgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~ 652 (850)
||||+||+.|+++|||||||+|+|++++|+|+|++++|||++|+|+||+|||+||||||+|||+||||++||...+.++.
T Consensus 476 MCf~~D~~~g~~va~VQ~PQ~F~~i~~~D~y~~~~~~ffd~~~~g~dglqGP~YvGTGC~fRR~ALyG~~p~~~~~~~~~ 555 (977)
T PLN02195 476 MCFLMDPVVGRDVCYVQFPQRFDGIDRSDRYANRNVVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPSLPRLPKS 555 (977)
T ss_pred HhhccCcccCCeeEEEcCCcccCCCCCCCCCCcccceeeeeeeccccccCCccccccCceeeehhhhccCcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877655555
Q ss_pred CCcc-cccCCCccccCCcCccCCccccCCCCCCCCCccccchhhhhcccCCCCchhhHHHhhhhHHHHhhcchHHHHHhH
Q 003073 653 GLLS-SLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVAST 731 (850)
Q Consensus 653 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~ 731 (850)
+++| +|||+++++..... .+..+..++.+.+.++..++++++ ..++|++.++++++|+++||+|.+|++|+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~fG~S~~fi~S~ 627 (977)
T PLN02195 556 SSSSSSCCCPTKKKPEQDP---SEIYRDAKREDLNAAIFNLREIDN-----YDEYERSMLISQMSFEKTFGLSSVFIEST 627 (977)
T ss_pred ccccccccccccccccccc---hhhccccccccccccccccccccc-----cchhhhhhhhhhhHHHHhhcccHHHHHHH
Confidence 4433 45555544322111 011222233344445555555432 12346778899999999999999999999
Q ss_pred hhhcCCCCCCcchhhHHHHhhhhccccccccCccccccceeecccchhHHHHHHHHHCCcEEEEeCCCCCcccccCCCCH
Q 003073 732 LMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINL 811 (850)
Q Consensus 732 l~e~GG~p~~~~~~~~l~eai~v~sC~YE~~T~WG~evGW~y~SITEDi~Tg~rLh~rGwRsvY~~p~~aaf~G~aP~tl 811 (850)
+++.+|.+..++++++|+||+||+||+||++|+||+||||+|+|+|||+.||++||++||||+|++|.+++|.|+||+|+
T Consensus 628 ~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rlH~rGWrSvY~~p~r~af~G~AP~~L 707 (977)
T PLN02195 628 LMENGGVPESANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPVRPAFKGSAPINL 707 (977)
T ss_pred HHHhcCCCCCCCcHHHHHHHHhhhcccCccccchhhhcCeeccceecHHHHHHHHHccCCcEEecCCccHHhcccCCCCH
Confidence 99999999888999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHhhcCccccC------CccccccccC
Q 003073 812 SDRLNQVLRWALGSVEILFSRHCPICCL------SINEQVHYAS 849 (850)
Q Consensus 812 s~~lkQR~RWA~G~lQIllsr~~Pl~~G------~l~~~~~y~~ 849 (850)
.+++.||+|||.|++|||++++||+|+| .+.|||+|++
T Consensus 708 ~~~L~Qr~RWA~G~lqI~~sr~nPl~~g~~~~~L~~~QRL~Yl~ 751 (977)
T PLN02195 708 SDRLHQVLRWALGSVEIFLSRHCPLWYGYGGGRLKWLQRLAYIN 751 (977)
T ss_pred HHHHHHHHHHHhchhhhhhccCCccccccCCCCCCHHHHHHHHH
Confidence 9999999999999999999999999963 3679999974
No 7
>PLN02248 cellulose synthase-like protein
Probab=100.00 E-value=2.7e-191 Score=1669.47 Aligned_cols=713 Identities=52% Similarity=0.930 Sum_probs=599.1
Q ss_pred CccccccCCccccc--cCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccccccccCCCCcccCCCCcCC
Q 003073 9 VKSIKNVGGQVCQI--CGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREEDG 86 (850)
Q Consensus 9 ~k~~~~~~~~~C~i--Cgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr~kGs~rv~gd~e~e~ 86 (850)
.+.+....+..|.+ |+.+++.+++|+...+| ||+|.|||+||-++.+.| +.||+||++||.+ | ++|
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--------~--~~~ 183 (1135)
T PLN02248 116 HPQMAGAKGSSCAMPGCDGKVMRDERGEDLLPC-ECGFKICRDCYIDAVKSG-GICPGCKEPYKVT--------D--LDD 183 (1135)
T ss_pred CcccCCCCCCcccccCcccccccccccccCCcc-cccchhHHhHhhhhhhcC-CCCCCCccccccc--------c--ccc
Confidence 35678889999998 99999999999999999 999999999999999995 7999999999765 3 222
Q ss_pred CCCCCCCccCCCccchhhhhhhHHHHhhhhhccCCCCCCCCCCCCccccC-CCCCcccCCccccCCCCCCCccccccCCC
Q 003073 87 DADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSH-NHIPRLTGGQEVSGELSAASPEHLSMASP 165 (850)
Q Consensus 87 ~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (850)
+.+|.+.+ ... ++.. +.++.+...+. .....+..+| +|||+ |+
T Consensus 184 ~~~~~~~~----------~~~----~~~~----------~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~----- 227 (1135)
T PLN02248 184 EVPDESSG----------ALP----LPPP----------GGSKMDRRLSLMKSNSLLMRSQ--TGDFD-----HN----- 227 (1135)
T ss_pred cccccccc----------ccc----CCCC----------CCcccccccccccccchhccCC--CCCCC-----Cc-----
Confidence 22221111 111 1110 01111111000 0012244455 56776 43
Q ss_pred CCCCCCccccCCCCCCCCCccccCCCCCCCCCCCccccccchhhhhhhhccccccccCCCCccccCCCCCCCCCCCcccC
Q 003073 166 GVGPGKRIHYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDASTDVLVD 245 (850)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (850)
||++++ +++|||||+.|++... .|++.++ ..
T Consensus 228 --------------------~w~~~~--~~~~~~~~~~~~~~~~----------------------~~~~~~~-----~~ 258 (1135)
T PLN02248 228 --------------------RWLFET--KGTYGYGNAVWPKDDG----------------------YGDDGGG-----GG 258 (1135)
T ss_pred --------------------eeeeec--ccccccccccCccccc----------------------cCCCCCc-----cc
Confidence 899998 8899999999998632 1111010 11
Q ss_pred CcccccccCCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 003073 246 DSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLP 325 (850)
Q Consensus 246 ~~~~~~~~~~pL~rk~~~~~~~~~~yR~~i~~~l~~~~~yl~wRi~~~~~~a~~lWl~~vi~Ei~fa~~wiL~q~~kw~P 325 (850)
...+++++|+||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++|+||+||+|+|+|+|++||+|
T Consensus 259 ~~~~~~~~~~pL~~~~~i~~~il~pyRl~~~~rlv~l~~fl~~Ri~~~~~~~~~~W~~s~~cE~WFaf~Wll~q~~Kw~P 338 (1135)
T PLN02248 259 PGEFMDKPWRPLTRKVKISAAILSPYRLLILIRLVVLGLFLTWRVRNPNEDAMWLWGMSVVCEIWFAFSWLLDQLPKLCP 338 (1135)
T ss_pred cccccccCCCCceeeeecCcccccHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 11568999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred cccchhhhHhhhhhccCC-----CCCCCCcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHH
Q 003073 326 VNRETYLDRLSLRYEREG-----EPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFE 400 (850)
Q Consensus 326 v~R~~~~drL~~r~e~~~-----~~~~lP~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e 400 (850)
|+|.||+++|++|||+|+ ++++||.|||||+|.||.||||++|+|||||+||+|||++||+|||+|||++++||+
T Consensus 339 v~R~t~~~rL~~r~e~~~~~~p~g~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKLacYvSDDGgS~LTf~ 418 (1135)
T PLN02248 339 INRATDLAVLKEKFETPSPSNPTGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEKLACYLSDDGGALLTFE 418 (1135)
T ss_pred cccccCHHHHHHHhccccccCCCCcccCCcceeEeecCCCccCcchHHHHHHHHHhcccccccceeEEEecCCchHHHHH
Confidence 999999999999998654 367899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHhhhhhHhHHHhhCCCCCCchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHH------------
Q 003073 401 ALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVA------------ 468 (850)
Q Consensus 401 ~L~Ea~~FA~~WvPFCkk~~IepRaPe~YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~a------------ 468 (850)
+|.||++||++||||||||+|||||||+||++|.|+++++++|+|++|||+|||||||||+|||+|++
T Consensus 419 AL~EAa~FA~~WVPFCrKh~IepRaPe~YFs~~~~~~~~~~~~~F~~d~r~~KreYee~K~RIe~l~~~~~~rs~~~n~~ 498 (1135)
T PLN02248 419 AMAEAASFARIWVPFCRKHDIEPRNPESYFSLKRDPTKNKVRPDFVKDRRRVKREYDEFKVRINGLPDSIRRRSDAYNAR 498 (1135)
T ss_pred HHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCccchhHHHHHHHHHHHHHHHHHHHHhhhhhccccccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred ---h---------------hhcCCcccccccCCCCCCCCC--------CCCCccceeeeeccCC------------CCCC
Q 003073 469 ---K---------------AQKIPEEGWVMQDGTPWPGNN--------TRDHPGMIQVFLGENG------------GLDA 510 (850)
Q Consensus 469 ---k---------------a~k~p~~~w~m~dgt~wpg~~--------~rdhp~~iqV~l~~~G------------~~d~ 510 (850)
+ ++|+|+++| |+|||+|||+| ++|||+||||||++++ ..|.
T Consensus 499 ~e~~~~~~~~~~~~~~~~e~~~~~~~~w-m~dgt~wpg~W~~~~~~~~~~dH~~IIqVll~~p~~e~~~g~~~~~~~~d~ 577 (1135)
T PLN02248 499 EEIKAKKKQRESGGGDPSEPLKVPKATW-MADGTHWPGTWLSSAPDHSRGDHAGIIQVMLKPPSDEPLMGSADDENLIDF 577 (1135)
T ss_pred HHHHhhhhhhhhccccccccccccccee-eccCCcCCCcccCcccCCCCCCCcceeEEeccCCCcccccCcccccccccc
Confidence 1 356799999 99999999995 3599999999998653 1232
Q ss_pred --CCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhcCCCCCcceEEE
Q 003073 511 --EGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYV 588 (850)
Q Consensus 511 --~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~DP~~G~~v~~V 588 (850)
.+.+||+|||||||||||++||+||||||||+||||+|||||||+|||||||+|+|++|+++||||+||+ |+++|||
T Consensus 578 ~~~d~~lP~LVYVSREKRPg~~Hh~KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~lD~~-g~~vAfV 656 (1135)
T PLN02248 578 TDVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFMMDRG-GDRICYV 656 (1135)
T ss_pred cccccccceeEEEecccCCCCCcccccchhhhHHHhhhhccCCCeEEEeccCcccCCchhHHhcchheecCC-CCceEEE
Confidence 3349999999999999999999999999999999999999999999999999999999999999999997 9999999
Q ss_pred eccccccCCCccccccchhHHHHhhhhccccCCCCccccccchhhhhhhhcCCCCCCCCCCCCCCCcccccCCCccccCC
Q 003073 589 QFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSK 668 (850)
Q Consensus 589 QtPQrF~~id~~Dryan~~~vFfdi~~~glDgiqgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (850)
||||||+|+|++|||+|+++||||++|+|+||+|||+||||||+|||+||||++||...+..+. || |||+.++++++
T Consensus 657 QFPQrF~~I~k~D~Ygn~~~Vffdi~~~GlDGlqGP~YvGTGCffRR~ALYG~~pp~~~~~~~~--~~-~~~~~~~~~~~ 733 (1135)
T PLN02248 657 QFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRIALYGFDPPRAKEHSGC--FG-SCKFTKKKKKE 733 (1135)
T ss_pred cCCcccCCCCCCCccCCcceeeeeeeeccccccCCccccccCceeeehhhcCcCCccccccccc--cc-ccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999976543332 22 33343333211
Q ss_pred cCccCCccccCCCCCCCCCccccchhhhhcccCCCCchhhHHHhhhhHHHHhhcchHHHHHhHhh-hcCCCCC-------
Q 003073 669 SSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLM-ENGGVPQ------- 740 (850)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~-e~GG~p~------- 740 (850)
... +.+ ..+++++ .++ .++.+.++++||+|..|++|+.. +.+|.+.
T Consensus 734 ~~~--------------~~~-~~~~~~~-------~~~----~~~~~~~~~rfG~S~~fi~S~~~a~~q~~~~~~~~~~~ 787 (1135)
T PLN02248 734 TSA--------------SEP-EEQPDLE-------DDD----DLELSLLPKRFGNSTMFAASIPVAEFQGRPLADHPSVK 787 (1135)
T ss_pred ccc--------------ccc-ccccccc-------ccc----hhhhhhhhhhhccchhhhhhhHHHhhcccccccccccc
Confidence 110 000 0011111 111 13567789999999999999953 3232221
Q ss_pred ------------CcchhhHHHHhhhhccccccccCccccccceeecccchhHHHHHHHHHCCcEEEEeCCCCCcccccCC
Q 003073 741 ------------SATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAP 808 (850)
Q Consensus 741 ------------~~~~~~~l~eai~v~sC~YE~~T~WG~evGW~y~SITEDi~Tg~rLh~rGwRsvY~~p~~aaf~G~aP 808 (850)
...++++|+||++||||+||++|+||+||||+|+|+|||+.||++||++||||+|+++.+++|.|+||
T Consensus 788 ~~~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evG~~YGSvTEDv~TGlrLH~rGWrSvY~~p~r~AF~GlAP 867 (1135)
T PLN02248 788 NGRPPGALTVPREPLDAATVAEAISVISCWYEDKTEWGDRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAP 867 (1135)
T ss_pred cccccccccccccCCcHHHHHHHHhhcccccccCCchhhhcCeeecceechHHHHHHHHhcCCceEeCCCChHhhcCCCC
Confidence 22356899999999999999999999999999999999999999999999999999988999999999
Q ss_pred CCHHHHHHHHHHHhhhhHHHHHhhcCccccC---CccccccccC
Q 003073 809 INLSDRLNQVLRWALGSVEILFSRHCPICCL---SINEQVHYAS 849 (850)
Q Consensus 809 ~tls~~lkQR~RWA~G~lQIllsr~~Pl~~G---~l~~~~~y~~ 849 (850)
+|+.++++||+|||+|++|||+++++||+.+ ++.|||+|++
T Consensus 868 ~~L~d~L~Qr~RWA~G~lQIf~sr~~Pll~~~~Lsl~QRL~Yl~ 911 (1135)
T PLN02248 868 INLTDRLHQVLRWATGSVEIFFSRNNALLASRRLKFLQRIAYLN 911 (1135)
T ss_pred CCHHHHHHHHHHHhhchHHHHhccCCccccCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999863 5789999974
No 8
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=100.00 E-value=1.5e-159 Score=1367.00 Aligned_cols=495 Identities=71% Similarity=1.203 Sum_probs=469.9
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhhHhHHHhhCCCCCCchhhh
Q 003073 351 VDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYF 430 (850)
Q Consensus 351 VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~WvPFCkk~~IepRaPe~YF 430 (850)
|||||+|.||.||||++|+|||||+||+|||++||+|||+|||++++||++|.||++|||+||||||||+|||||||+||
T Consensus 1 vDvFv~TaDP~~EPp~~~~nTvLS~lA~dYP~~kls~YvSDDg~s~ltf~al~Ea~~FA~~WvPFCkk~~ie~R~P~~YF 80 (720)
T PF03552_consen 1 VDVFVCTADPEKEPPLVTANTVLSILAYDYPVEKLSCYVSDDGGSMLTFYALMEAAKFAKHWVPFCKKYNIEPRAPEAYF 80 (720)
T ss_pred CceEEecCCCCcCCCeeeHHHHHHHHhhcCCccceeEEEecCCchHHHHHHHHHHHHHHhhhcchhhccCCccCCHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeeccCCCCCC
Q 003073 431 AQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDA 510 (850)
Q Consensus 431 ~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~rdhp~~iqV~l~~~G~~d~ 510 (850)
++|.|+++++++|+|++|||+|||+|||||+|||+|+++.+++|+++|+|+|||+|||++++|||+|||||++++|+.|+
T Consensus 81 ~~~~~~~~~~~~~~f~~e~~~~k~~ye~~k~ri~~~~~~~~~~~~~~~~~~~~~~w~~~~~~dH~~iiqv~~~~~~~~~~ 160 (720)
T PF03552_consen 81 SSKIDPLKDKVQPEFVKERRAMKREYEEFKVRIEALVAKIQKVPEEGWTMQDGTPWPGNTRRDHPGIIQVLLDNPGGKDV 160 (720)
T ss_pred ccCCCcccCCcChhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccceeccCCCcCCCCCCcCChhheEeeccCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhcCCCCCcceEEEec
Q 003073 511 EGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQF 590 (850)
Q Consensus 511 ~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~DP~~G~~v~~VQt 590 (850)
+|++||+|||||||||||++||+||||||+|+||||++||||||++||||||+|||+.++++||||+||+.|+++||||+
T Consensus 161 ~g~~lP~lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~d~~~g~~~~~vQf 240 (720)
T PF03552_consen 161 DGNELPMLVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFMDPKIGKKIAFVQF 240 (720)
T ss_pred ccCcCCeEEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhccCCCCCeeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCccccccchhHHHHhhhhccccCCCCccccccchhhhhhhhcCCCCCCCCCCCCCCCcccccCCCccccCCcC
Q 003073 591 PQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSS 670 (850)
Q Consensus 591 PQrF~~id~~Dryan~~~vFfdi~~~glDgiqgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (850)
||+|+|+++||+|+|+++|||+++|+|+||+|||+||||||+|||+||||++||...+....+|||+|||++++|+++.+
T Consensus 241 pq~f~~i~~~d~y~~~~~~~~~~~~~g~dG~~gp~y~Gtgc~~rR~al~g~~~~~~~~~~~~~~~~~~~c~~~~k~~~~~ 320 (720)
T PF03552_consen 241 PQRFDGIDKNDRYGNQNRVFFDINMRGLDGLQGPFYVGTGCFFRREALYGFDPPRYEKDPEKTCCCCSCCFGRRKKKKSK 320 (720)
T ss_pred CceeCCCCcCCCCCccceeeeeccccccccCCCceeeecCcceechhhhCCCCCchhcccCcceeeeecccCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999998887777775555555554444332
Q ss_pred ccCCccccCCCCCCCCCccccchhhhhcccCCCCchhhHHHhhhhHHHHhhcchHHHHHhHhhhcCCCCCCcchhhHHHH
Q 003073 671 KKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKE 750 (850)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~l~e 750 (850)
++. +++..++.+++.++++++++++++++ .++|++..+++++|+++||+|++|++|++++.|+++...+++++|+|
T Consensus 321 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~~~L~E 396 (720)
T PF03552_consen 321 KKP--KKRASKRRESSSPIFALEDIEEGAEG--SDEERSSLMSQKELEKKFGQSPEFIASTLMAQGGVPRSPSPASLLEE 396 (720)
T ss_pred ccc--hhcccccccccccccccccccccccc--chhhhhhcchhHHHHHHhcCCHHHHHHHHHHhcCCCCCCChHHHHHH
Confidence 221 23344567788999999999999888 77889999999999999999999999999999999999999999999
Q ss_pred hhhhccccccccCccccccceeecccchhHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHHhhhhHHHHH
Q 003073 751 AIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILF 830 (850)
Q Consensus 751 ai~v~sC~YE~~T~WG~evGW~y~SITEDi~Tg~rLh~rGwRsvY~~p~~aaf~G~aP~tls~~lkQR~RWA~G~lQIll 830 (850)
|+||+||+||++|+||+||||+|+|+|||+.||++||++||||+||+|.++||.|.||+|+.+.+.|++|||.|++||++
T Consensus 397 A~~V~sC~YE~~T~WGkevGwiYGSvtEDv~TG~rmH~rGWrSvYc~p~r~AF~G~AP~nL~d~L~Q~~RWA~GslEI~f 476 (720)
T PF03552_consen 397 AIHVASCGYEDKTEWGKEVGWIYGSVTEDVLTGFRMHCRGWRSVYCNPKRPAFLGSAPINLSDRLHQVKRWATGSLEIFF 476 (720)
T ss_pred HHHHhcCCccccCCcccccceEEEecccccccceeEeeCceeeEEeccccchhcccCCCChhhhceeeeeEeeeeEeeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCccccC-----CccccccccC
Q 003073 831 SRHCPICCL-----SINEQVHYAS 849 (850)
Q Consensus 831 sr~~Pl~~G-----~l~~~~~y~~ 849 (850)
+|+||||+| .+.|||+|+.
T Consensus 477 Sr~~Pl~~g~~~rL~~lQrLaY~~ 500 (720)
T PF03552_consen 477 SRHCPLWYGYGGRLKFLQRLAYLN 500 (720)
T ss_pred hcCCchhccCCCCCcHHHHHHHHH
Confidence 999999986 2569999963
No 9
>PLN02190 cellulose synthase-like protein
Probab=100.00 E-value=3.2e-153 Score=1317.56 Aligned_cols=522 Identities=39% Similarity=0.731 Sum_probs=472.1
Q ss_pred ccCCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHhhhccccccccchh
Q 003073 252 EARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLPVNRETY 331 (850)
Q Consensus 252 ~~~~pL~rk~~~~~~~~~~yR~~i~~~l~~~~~yl~wRi~~~~~~a~~lWl~~vi~Ei~fa~~wiL~q~~kw~Pv~R~~~ 331 (850)
.+.+||++++++++.. ||++.+++++++++||+||++++++++ ++|+++++||+||+|+|+|+|++||+|++|.++
T Consensus 6 ~~~~pL~~~~~~~~~~---~r~~~~~vl~~~~~~l~~R~~~~~~~~-~~W~~~~~~E~wf~~~WlL~q~~kw~pv~r~~~ 81 (756)
T PLN02190 6 SSLPPLCERISHKSYF---LRAVDLTILGLLFSLLLYRILHMSEND-TVWLVAFLCESCFSFVWLLITCIKWSPAEYKPY 81 (756)
T ss_pred CCCCCceeeeeccchh---HHHHHHHHHHHHHHHHHHHHhCCCccc-HHHHHHHHHHHHHHHHHHHhccceeeecCCCCC
Confidence 3457999999999874 899999999999999999999999887 689999999999999999999999999999999
Q ss_pred hhHhhhhhccCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhh
Q 003073 332 LDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARK 411 (850)
Q Consensus 332 ~drL~~r~e~~~~~~~lP~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~ 411 (850)
+++|++|++ +||+|||||+|+||.||||++|+|||+|+|++|||++||+|||+|||++++||++|.||++||++
T Consensus 82 p~~l~~r~~------~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~eklscYvSDDG~s~LT~~al~EAa~FA~~ 155 (756)
T PLN02190 82 PDRLDERVH------DLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKI 155 (756)
T ss_pred cHHHHHhhc------cCCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCccccceEEecCCCcHhHHHHHHHHHHHHhh
Confidence 999999983 59999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHhhCCCCCCchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCC--CCCCCC
Q 003073 412 WVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDG--TPWPGN 489 (850)
Q Consensus 412 WvPFCkk~~IepRaPe~YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dg--t~wpg~ 489 (850)
||||||||+|||||||+||+.+.+ .+..++|++|||+|||||||||+||++.+ +...|.+.++ .+|+++
T Consensus 156 WvPFCrK~~IepRaPe~YF~~~~~---~~~~~~f~~e~~~~K~eYee~k~ri~~a~------~~~~~~~~~~~~~~~~~~ 226 (756)
T PLN02190 156 WVPFCKKYNVRVRAPFRYFLNPPV---ATEDSEFSKDWEMTKREYEKLSRKVEDAT------GDSHWLDAEDDFEAFSNT 226 (756)
T ss_pred hcccccccCCCcCCHHHHhcCCCC---CCCCchhHHHHHHHHHHHHHHHHHHHhhc------cCCCCcccCCcccccCCC
Confidence 999999999999999999998643 34568999999999999999999999864 3456777666 689998
Q ss_pred CCCCCccceeeeeccCCCCCCCCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHH
Q 003073 490 NTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKAL 569 (850)
Q Consensus 490 ~~rdhp~~iqV~l~~~G~~d~~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfL 569 (850)
.++|||+||||+++++|+ +.+|++||+|||||||||||++||+||||||+|+||||++||+|||++||||||+|||+++
T Consensus 227 ~~~dH~~iiqVll~~~~~-~~~~~~lP~LVYvSREKrP~~~Hh~KAGAmNaLlRVSavmtNaP~iLnlDCDmY~Nns~~~ 305 (756)
T PLN02190 227 KPNDHSTIVKVVWENKGG-VGDEKEVPHLVYISREKRPNYLHHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVV 305 (756)
T ss_pred CCCCCccceEEEecCCCC-ccccccCceEEEEeccCCCCCCcccccchhHHHHHHhhhhccCCeEEEecCccccCchhHH
Confidence 899999999999999775 4479999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCC-CcceEEEeccccccCCCccccccchhHHHHhhhhccccCCCCccccccchhhhhhhhcCCCCCCCCC
Q 003073 570 REAMCFMMDPNL-GKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPK 648 (850)
Q Consensus 570 r~tv~fF~DP~~-G~~v~~VQtPQrF~~id~~Dryan~~~vFfdi~~~glDgiqgp~yvGTGcvfRR~ALyG~~p~~~~~ 648 (850)
|++||||+||.. ++++||||+||+|+ |+|+|+++||||++|+|+||+|||+||||||+|||+||||++||....
T Consensus 306 r~AmCf~ld~~~~~~~~~fVQfPQ~F~-----D~y~n~~~v~f~~~~~GldGlqGP~YvGTGCffrR~alyG~~p~~~~~ 380 (756)
T PLN02190 306 RQAMCIFLQKSKNSNHCAFVQFPQEFY-----DSNTNELTVLQSYLGRGIAGIQGPIYIGSGCFHTRRVMYGLSSDDLED 380 (756)
T ss_pred HHhhhhhcCCCCCCCeeEEEeCchhhc-----cccCccceEEEEEeeccccccCCcccccCCcceEeeeecCCCcccccc
Confidence 999999999864 45899999999998 789999999999999999999999999999999999999999874332
Q ss_pred CCCCCCcccccCCCccccCCcCccCCccccCCCCCCCCCccccchhhhhcccCCCCchhhHHHhhhhHHHHhhcchHHHH
Q 003073 649 HRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFV 728 (850)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~ 728 (850)
... .. + . .++ ..++..+++++||+|+.|+
T Consensus 381 ~~~--------------------------~~---~---~------------------~~~-~~~~~~~~~~~fg~s~~f~ 409 (756)
T PLN02190 381 DGS--------------------------LS---S---V------------------ATR-EFLAEDSLAREFGNSKEMV 409 (756)
T ss_pred ccc--------------------------cc---c---c------------------ccc-cccchhhhhhhcCCcHHHH
Confidence 100 00 0 0 000 0233456789999999999
Q ss_pred HhHhhhcCCCCC-CcchhhHHHHhhhhccccccccCccccccceeecccchhHHHHHHHHHCCcEEEEeCCCCCcccccC
Q 003073 729 ASTLMENGGVPQ-SATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSA 807 (850)
Q Consensus 729 ~S~l~e~GG~p~-~~~~~~~l~eai~v~sC~YE~~T~WG~evGW~y~SITEDi~Tg~rLh~rGwRsvY~~p~~aaf~G~a 807 (850)
+|++.+..+.+. ..+.+++|+||++|+||+||++|+||+||||.|+|+|||+.||++||++||||+||+|.+++|.|.+
T Consensus 410 ~s~~~~~~~~~~~~~~~~~~~~eA~~V~sC~YE~~T~WG~evG~~ygSitED~~TGl~mh~rGWrSvY~~p~~~AFlG~a 489 (756)
T PLN02190 410 KSVVDALQRKPNPQNSLTNSIEAAQEVGHCHYEYQTSWGNTIGWLYDSVAEDLNTSIGIHSRGWTSSYISPDPPAFLGSM 489 (756)
T ss_pred HHHHHHhccCCCCccchHHHHHHHHhhcccCCCCCCchhhccCcccceeechHHHHHHHHccCCceEecCCCchhhcCcC
Confidence 999876644332 3346789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhhhHHHHHhhcCccccC-----CccccccccC
Q 003073 808 PINLSDRLNQVLRWALGSVEILFSRHCPICCL-----SINEQVHYAS 849 (850)
Q Consensus 808 P~tls~~lkQR~RWA~G~lQIllsr~~Pl~~G-----~l~~~~~y~~ 849 (850)
|+++.+.+.||+||+.|++||+++++|||++| .+.|||+|++
T Consensus 490 P~~l~~~L~Q~~RWa~G~lqI~fsr~nPl~~g~~~~L~l~QRLaYl~ 536 (756)
T PLN02190 490 PPGGPEAMVQQRRWATGLIEVLFNKQSPLIGMFCRKIRFRQRLAYLY 536 (756)
T ss_pred CCChHHHhhhhhhHhhhhHHHHHhcCCCceeccCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999873 3679999974
No 10
>PLN02893 Cellulose synthase-like protein
Probab=100.00 E-value=8.9e-147 Score=1268.82 Aligned_cols=503 Identities=39% Similarity=0.741 Sum_probs=461.1
Q ss_pred ccCCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHhhhcccccch-HHHHHHHHHHHHHHHHHHHHhhhccccccccch
Q 003073 252 EARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNA-IALWLISVICEIWFAISWIFDQFPKWLPVNRET 330 (850)
Q Consensus 252 ~~~~pL~rk~~~~~~~~~~yR~~i~~~l~~~~~yl~wRi~~~~~~a-~~lWl~~vi~Ei~fa~~wiL~q~~kw~Pv~R~~ 330 (850)
...+||++++++++.. +||+++++++++++++|+||+++.+.+. .|+|+++++||+||+|+|+|+|++||+||+|.+
T Consensus 9 ~~~~pL~~~~~~~~~~--~~R~~~~~~~~~i~~ll~~r~~~~~~~~~~~~w~~~~~~e~wf~f~W~l~q~~k~~Pv~r~~ 86 (734)
T PLN02893 9 TGAPPLHTCHPMRRTI--ANRVFAVVYSCAILALLYHHVIALLHSTTTLITLLLLLADIVLAFMWATTQAFRMCPVHRRV 86 (734)
T ss_pred CCCCCceeeeecCCch--HHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence 4567999999998864 6999999999999999999999887665 889999999999999999999999999999999
Q ss_pred hhhHhhhhhccCCCCCCCCcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhh
Q 003073 331 YLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFAR 410 (850)
Q Consensus 331 ~~drL~~r~e~~~~~~~lP~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~ 410 (850)
++|||+++++ .++||+|||||+|.||.||||++|+|||||+||+|||++||+|||+|||++++||++|.||++||+
T Consensus 87 ~~~~L~~~~~----~~~lP~vDvfv~TaDP~~Epp~~~~ntvLSilA~dyp~~kls~YvSDDGgs~lt~~al~Eaa~FA~ 162 (734)
T PLN02893 87 FIEHLEHYAK----ESDYPGLDVFICTADPYKEPPMGVVNTALSVMAYDYPTEKLSVYVSDDGGSKLTLFAFMEAAKFAT 162 (734)
T ss_pred CHHHHhhhcc----cccCCcceeeeccCCcccCchHHHHHHHHHHHhhccCccceEEEEecCCccHHHHHHHHHHHHHHH
Confidence 9999987653 478999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhHHHhhCCCCCCchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCC-----CC
Q 003073 411 KWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDG-----TP 485 (850)
Q Consensus 411 ~WvPFCkk~~IepRaPe~YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dg-----t~ 485 (850)
+||||||||+|||||||+||+++ +++|++|||+||+||||||+|||+++++ +++|++ |.|.++ +.
T Consensus 163 ~WvPFCrk~~ie~R~P~~YF~~~--------~~~~~~e~~~~k~~Yee~k~ri~~~~~~-~~~~~~-~~~~~~~~~~f~~ 232 (734)
T PLN02893 163 HWLPFCKKNKIVERCPEAYFSSN--------SHSWSPETEQIKMMYESMKVRVENVVER-GKVSTD-YITCDQEREAFSR 232 (734)
T ss_pred hhcccccccCCCcCCHHHHhccC--------CCccchHHHHHHHHHHHHHHHHHHHHhc-CcCchh-hhhhccccccccc
Confidence 99999999999999999999988 3578999999999999999999999976 889887 655544 68
Q ss_pred CCCCC-CCCCccceeeeeccCCCCCCCCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCC
Q 003073 486 WPGNN-TRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYIN 564 (850)
Q Consensus 486 wpg~~-~rdhp~~iqV~l~~~G~~d~~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~ 564 (850)
|++|. ++|||+||||+++++++.|.+|++||+|||||||||||++||+||||||+||+|||++||||||+||||||++|
T Consensus 233 w~~~~~~~dH~~ivqV~l~~~~~~d~~g~~lP~lvYvsReKrp~~~Hh~KAGaLN~llrvS~~~TngpfIl~lDcD~y~n 312 (734)
T PLN02893 233 WTDKFTRQDHPTVIQVLLESGKDKDITGHTMPNLIYVSREKSKNSPHHFKAGALNTLLRVSATMTNAPIILTLDCDMYSN 312 (734)
T ss_pred CcCCCCCCCCCceeeeeccCCCccchhhccCCceEEEeCCCCCCCCcccccchHHHHHHhhcccCCCCEEEEecCCcCCC
Confidence 99886 57999999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhhhcCCCCCcceEEEeccccccCCCccccccchhHHHHhhhhccccCCCCccccccchhhhhhhhcCCCCC
Q 003073 565 NSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPP 644 (850)
Q Consensus 565 ~pdfLr~tv~fF~DP~~G~~v~~VQtPQrF~~id~~Dryan~~~vFfdi~~~glDgiqgp~yvGTGcvfRR~ALyG~~p~ 644 (850)
+|++|+++||||+||+.++++|||||||+|+|++++|+|+|++++||+++|+|+||+|||+||||||+|||+||||..+.
T Consensus 313 ~p~~l~~amcff~Dp~~~~~vafVQfPQ~F~~i~~~D~y~~~~~vff~~~~~glDG~~gp~y~GTGc~~RR~al~G~~~~ 392 (734)
T PLN02893 313 DPQTPLRALCYLLDPSMDPKLGYVQFPQIFHGINKNDIYAGELKRLFQINMIGMDGLAGPNYVGTGCFFRRRVFYGGPSS 392 (734)
T ss_pred chhHHHHHHHHhcCCCcCCceEEEeCcccccCCCcCCCCcchhHHHHHHHhhcccccCCceeeccceEEEHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997321
Q ss_pred CCCCCCCCCCcccccCCCccccCCcCccCCccccCCCCCCCCCccccchhhhhcccCCCCchhhHHHhhhhHHHHhhcch
Q 003073 645 LKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQS 724 (850)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s 724 (850)
... ++++ + +++
T Consensus 393 ~~~---------------------------------------------~~~~----~-------------------~~~- 403 (734)
T PLN02893 393 LIL---------------------------------------------PEIP----E-------------------LNP- 403 (734)
T ss_pred ccc---------------------------------------------hhhh----h-------------------ccc-
Confidence 000 0000 0 000
Q ss_pred HHHHHhHhhhcCCCCCCcchhhHHHHhhhhccccccccCccccccceeecccchhHHHHHHHHHCCcEEEEeCCCCCccc
Q 003073 725 AVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFK 804 (850)
Q Consensus 725 ~~f~~S~l~e~GG~p~~~~~~~~l~eai~v~sC~YE~~T~WG~evGW~y~SITEDi~Tg~rLh~rGwRsvY~~p~~aaf~ 804 (850)
.++...+....++++||+||+||.||++|+||++|||.|+|+|||+.||++||++|||++|++|.+++|.
T Consensus 404 ----------~~~~~~~~~~~~~~~~a~~v~sC~ye~~t~WG~~~G~~ygsvtED~~Tg~~lh~~GWrSvY~~p~~~af~ 473 (734)
T PLN02893 404 ----------DHLVDKSIKSQEVLALAHHVAGCNYENQTNWGSKMGFRYGSLVEDYYTGYRLQCEGWKSIFCNPKRPAFL 473 (734)
T ss_pred ----------ccccccccchHHHHHHhhhccccccccCCccccccceEeccccccHHHHHHHHhcCCcEEecCCCchhhc
Confidence 1122344567789999999999999999999999999999999999999999999999999998888899
Q ss_pred ccCCCCHHHHHHHHHHHhhhhHHHHHhhcCccccC----CccccccccC
Q 003073 805 GSAPINLSDRLNQVLRWALGSVEILFSRHCPICCL----SINEQVHYAS 849 (850)
Q Consensus 805 G~aP~tls~~lkQR~RWA~G~lQIllsr~~Pl~~G----~l~~~~~y~~ 849 (850)
|++|+|+.+++.||+|||.|++||+++++||+++| .+.|||+|++
T Consensus 474 G~aP~~l~~~l~Q~~RWa~G~lqI~~s~~nPl~~g~~~L~~~Qrl~Y~~ 522 (734)
T PLN02893 474 GDSPINLHDVLNQQKRWSVGLLEVAFSKYSPITFGVKSIGLLMGLGYAH 522 (734)
T ss_pred cCCCCCHHHHHHHHHHHHhhhHHHHhhccCchhhcccCCCHHHHHHHHH
Confidence 99999999999999999999999999999999964 4679999974
No 11
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=100.00 E-value=5.8e-51 Score=479.31 Aligned_cols=331 Identities=27% Similarity=0.453 Sum_probs=268.8
Q ss_pred HHH-HHHHHHHHHHHHHhhhcccccch----HHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHhhhhhccCCCCC
Q 003073 272 RMV-IFLRLIILGIFLYYRIKNPVHNA----IALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPS 346 (850)
Q Consensus 272 R~~-i~~~l~~~~~yl~wRi~~~~~~a----~~lWl~~vi~Ei~fa~~wiL~q~~kw~Pv~R~~~~drL~~r~e~~~~~~ 346 (850)
|++ +++.+++.++|++||++.+++.. ..++++++++|+++.++.++..+..+.|.+|...+ .+..++
T Consensus 57 ~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~r~~~~--------~~~~~~ 128 (713)
T TIGR03030 57 RLLLLVLSVFISLRYLWWRLTETLPFDNTLNFIFGTLLLLAELYSITILLLGYFQTVRPLDRTPVP--------LPLDPE 128 (713)
T ss_pred HHHHHHHHHHHHHHHHHhheeeecCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccC--------CCCCcc
Confidence 554 55667778999999999988743 33567799999999988888888888888775421 123456
Q ss_pred CCCcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhhHhHHHhhCCCCCCc
Q 003073 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAP 426 (850)
Q Consensus 347 ~lP~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~WvPFCkk~~IepRaP 426 (850)
.+|+|||+||+|| |++.++++||.+++++|||.++++|||+|||+++.|.....+.++-
T Consensus 129 ~~P~VsViIP~yN---E~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~------------------ 187 (713)
T TIGR03030 129 EWPTVDVFIPTYN---EDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAE------------------ 187 (713)
T ss_pred cCCeeEEEEcCCC---CCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhh------------------
Confidence 7999999999999 9999999999999999999999999999999998654322111100
Q ss_pred hhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeeccCC
Q 003073 427 EWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENG 506 (850)
Q Consensus 427 e~YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~rdhp~~iqV~l~~~G 506 (850)
..+.|..+ .++.++
T Consensus 188 ------------------~~~~~~~~-----------~~l~~~------------------------------------- 201 (713)
T TIGR03030 188 ------------------AAQRREEL-----------KEFCRK------------------------------------- 201 (713)
T ss_pred ------------------hhhhHHHH-----------HHHHHH-------------------------------------
Confidence 00001111 122210
Q ss_pred CCCCCCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhh-cCCCCCcce
Q 003073 507 GLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKHV 585 (850)
Q Consensus 507 ~~d~~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF-~DP~~G~~v 585 (850)
..+.|+.|++ ++|+||||||++++ .++||||+++|||++ +.|++|++++++| .|| ++
T Consensus 202 ---------~~v~yi~r~~----n~~~KAgnLN~al~----~a~gd~Il~lDAD~v-~~pd~L~~~v~~f~~dp----~v 259 (713)
T TIGR03030 202 ---------LGVNYITRPR----NVHAKAGNINNALK----HTDGELILIFDADHV-PTRDFLQRTVGWFVEDP----KL 259 (713)
T ss_pred ---------cCcEEEECCC----CCCCChHHHHHHHH----hcCCCEEEEECCCCC-cChhHHHHHHHHHHhCC----CE
Confidence 0278999986 67899999999999 589999999999999 6899999999998 688 89
Q ss_pred EEEeccccccCCCcc-------ccccchhHHHHhhhhccccCCCCccccccchhhhhhhhcCCCCCCCCCCCCCCCcccc
Q 003073 586 CYVQFPQRFDGIDRN-------DRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSL 658 (850)
Q Consensus 586 ~~VQtPQrF~~id~~-------Dryan~~~vFfdi~~~glDgiqgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~ 658 (850)
++||+||.|+|.++. +++.+++..||..+++|+|.+++++++||++++||+||
T Consensus 260 ~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~f~~~i~~g~~~~~~~~~~Gs~~~iRR~al-------------------- 319 (713)
T TIGR03030 260 FLVQTPHFFVSPDPIERNLGTFRRMPNENELFYGLIQDGNDFWNAAFFCGSAAVLRREAL-------------------- 319 (713)
T ss_pred EEEeCCeeccCCCHHhhhhHHHHHhhhHHHHHHHHHHHHHhhhCCeeecCceeEEEHHHH--------------------
Confidence 999999999987753 34567888999999999999999999999999999998
Q ss_pred cCCCccccCCcCccCCccccCCCCCCCCCccccchhhhhcccCCCCchhhHHHhhhhHHHHhhcchHHHHHhHhhhcCCC
Q 003073 659 FGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGV 738 (850)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~ 738 (850)
+++||+
T Consensus 320 --------------------------------------------------------------------------~~iGGf 325 (713)
T TIGR03030 320 --------------------------------------------------------------------------DEIGGI 325 (713)
T ss_pred --------------------------------------------------------------------------HHcCCC
Confidence 246765
Q ss_pred CCCcchhhHHHHhhhhccccccccCccccccceeecccchhHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHH
Q 003073 739 PQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQV 818 (850)
Q Consensus 739 p~~~~~~~~l~eai~v~sC~YE~~T~WG~evGW~y~SITEDi~Tg~rLh~rGwRsvY~~p~~aaf~G~aP~tls~~lkQR 818 (850)
+ .++++||++++++|+++||+++|++++.. .|++|+|++++++||
T Consensus 326 ~---------------------------------~~~vtED~~l~~rL~~~G~~~~y~~~~~~--~g~~p~sl~~~~~Qr 370 (713)
T TIGR03030 326 A---------------------------------GETVTEDAETALKLHRRGWNSAYLDRPLI--AGLAPETLSGHIGQR 370 (713)
T ss_pred C---------------------------------CCCcCcHHHHHHHHHHcCCeEEEeccccc--cccCCCCHHHHHHHH
Confidence 4 46899999999999999999999976554 799999999999999
Q ss_pred HHHhhhhHHHHHhhcCcccc-C-CccccccccC
Q 003073 819 LRWALGSVEILFSRHCPICC-L-SINEQVHYAS 849 (850)
Q Consensus 819 ~RWA~G~lQIllsr~~Pl~~-G-~l~~~~~y~~ 849 (850)
.||++|++|+++. .+|++. | ++.||++|++
T Consensus 371 ~RWa~G~~qi~~~-~~pl~~~gl~~~qrl~y~~ 402 (713)
T TIGR03030 371 IRWAQGMMQIFRL-DNPLLKRGLSFPQRLCYLN 402 (713)
T ss_pred HHHhcChHHHHhh-hCccccCCCCHHHHHHHHH
Confidence 9999999999976 579886 4 5789999864
No 12
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=100.00 E-value=1.2e-50 Score=480.67 Aligned_cols=311 Identities=28% Similarity=0.479 Sum_probs=262.0
Q ss_pred HHHHHHHHHHHHHHhhhcccccc----hHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHhhhhhccCCCCCCCC
Q 003073 274 VIFLRLIILGIFLYYRIKNPVHN----AIALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLA 349 (850)
Q Consensus 274 ~i~~~l~~~~~yl~wRi~~~~~~----a~~lWl~~vi~Ei~fa~~wiL~q~~kw~Pv~R~~~~drL~~r~e~~~~~~~lP 349 (850)
++++.+++.++|++||++.+++. +..+.++++++|+++.++.++..+..+.|..|.+.+ .+...+.+|
T Consensus 189 l~~l~~~~~~rY~~WR~~~tL~~~~~~~~~~~~~ll~ae~~~~~~~~lg~~~~~~~~~r~~~~--------~~~~~~~~P 260 (852)
T PRK11498 189 LIVLSLTVSCRYIWWRYTSTLNWDDPVSLVCGLILLFAETYAWIVLVLGYFQVVWPLNRQPVP--------LPKDMSLWP 260 (852)
T ss_pred HHHHHHHHHHHHHHHHHheeeCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC--------CCcccCCCC
Confidence 45677888999999999998873 345667899999999988888888887788775321 122345789
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhhHhHHHhhCCCCCCchhh
Q 003073 350 AVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWY 429 (850)
Q Consensus 350 ~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~WvPFCkk~~IepRaPe~Y 429 (850)
+|||+||||| |+..++++||.+++++|||.++++|||+|||+++.| .++ |+++
T Consensus 261 ~VsViIPtYN---E~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t-------~~l-------a~~~---------- 313 (852)
T PRK11498 261 TVDIFVPTYN---EDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEF-------RQF-------AQEV---------- 313 (852)
T ss_pred cEEEEEecCC---CcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHH-------HHH-------HHHC----------
Confidence 9999999999 999999999999999999999999999999998721 111 1000
Q ss_pred hhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeeccCCCCC
Q 003073 430 FAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLD 509 (850)
Q Consensus 430 F~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~rdhp~~iqV~l~~~G~~d 509 (850)
T Consensus 314 -------------------------------------------------------------------------------- 313 (852)
T PRK11498 314 -------------------------------------------------------------------------------- 313 (852)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhh-cCCCCCcceEEE
Q 003073 510 AEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKHVCYV 588 (850)
Q Consensus 510 ~~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF-~DP~~G~~v~~V 588 (850)
.+.|+.|++ +.|+||||||++++ .++||||+++|||++ +.++||+++|++| .|| ++++|
T Consensus 314 -------~v~yI~R~~----n~~gKAGnLN~aL~----~a~GEyIavlDAD~i-p~pdfL~~~V~~f~~dP----~VglV 373 (852)
T PRK11498 314 -------GVKYIARPT----HEHAKAGNINNALK----YAKGEFVAIFDCDHV-PTRSFLQMTMGWFLKDK----KLAMM 373 (852)
T ss_pred -------CcEEEEeCC----CCcchHHHHHHHHH----hCCCCEEEEECCCCC-CChHHHHHHHHHHHhCC----CeEEE
Confidence 167888875 56799999999999 589999999999999 7899999999975 788 89999
Q ss_pred eccccccCCCccc-------cccchhHHHHhhhhccccCCCCccccccchhhhhhhhcCCCCCCCCCCCCCCCcccccCC
Q 003073 589 QFPQRFDGIDRND-------RYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGG 661 (850)
Q Consensus 589 QtPQrF~~id~~D-------ryan~~~vFfdi~~~glDgiqgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~ 661 (850)
|+||.|+|.|+.. .+.+++..||+..++|+|.+++.+++||++++||+||
T Consensus 374 Qtp~~f~n~dp~~rnl~~~~~~~~e~~~fy~~iq~g~~~~~a~~~~Gs~aviRReaL----------------------- 430 (852)
T PRK11498 374 QTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDATFFCGSCAVIRRKPL----------------------- 430 (852)
T ss_pred EcceeccCCchHHHhhHHHhhcccchhHHHHHHHhHHHhhcccccccceeeeEHHHH-----------------------
Confidence 9999999877632 3557788999999999999999999999999999998
Q ss_pred CccccCCcCccCCccccCCCCCCCCCccccchhhhhcccCCCCchhhHHHhhhhHHHHhhcchHHHHHhHhhhcCCCCCC
Q 003073 662 SRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQS 741 (850)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~ 741 (850)
+++||++.
T Consensus 431 -----------------------------------------------------------------------eeVGGfd~- 438 (852)
T PRK11498 431 -----------------------------------------------------------------------DEIGGIAV- 438 (852)
T ss_pred -----------------------------------------------------------------------HHhcCCCC-
Confidence 35687653
Q ss_pred cchhhHHHHhhhhccccccccCccccccceeecccchhHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHH
Q 003073 742 ATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRW 821 (850)
Q Consensus 742 ~~~~~~l~eai~v~sC~YE~~T~WG~evGW~y~SITEDi~Tg~rLh~rGwRsvY~~p~~aaf~G~aP~tls~~lkQR~RW 821 (850)
+++|||++++++|+++||+++|+++..+ .|++|+|++++++||.||
T Consensus 439 --------------------------------~titED~dlslRL~~~Gyrv~yl~~~~a--~glaPesl~~~~~QR~RW 484 (852)
T PRK11498 439 --------------------------------ETVTEDAHTSLRLHRRGYTSAYMRIPQA--AGLATESLSAHIGQRIRW 484 (852)
T ss_pred --------------------------------CccCccHHHHHHHHHcCCEEEEEeccce--eEECCCCHHHHHHHHHHH
Confidence 6899999999999999999999976555 799999999999999999
Q ss_pred hhhhHHHHHhhcCcccc-C-CccccccccC
Q 003073 822 ALGSVEILFSRHCPICC-L-SINEQVHYAS 849 (850)
Q Consensus 822 A~G~lQIllsr~~Pl~~-G-~l~~~~~y~~ 849 (850)
++|++|+++. ++|++. | ++.||++|++
T Consensus 485 arG~lQi~r~-~~pl~~~gL~~~qRl~y~~ 513 (852)
T PRK11498 485 ARGMVQIFRL-DNPLTGKGLKLAQRLCYAN 513 (852)
T ss_pred HHHHHHHHHH-hChhccCCCCHHHHHHHHH
Confidence 9999999976 689886 4 5779998864
No 13
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=100.00 E-value=1.9e-44 Score=312.87 Aligned_cols=80 Identities=71% Similarity=1.393 Sum_probs=42.0
Q ss_pred CccccccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccccccccCCCCcccCCCCcCCCC
Q 003073 9 VKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREEDGDA 88 (850)
Q Consensus 9 ~k~~~~~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr~kGs~rv~gd~e~e~~~ 88 (850)
+||++++++|+||||||+||+++|||+|||||||+|||||||||||||||+|+|||||||||||||||||+|| |+|||+
T Consensus 1 pkp~k~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kgsp~V~gD-eeedd~ 79 (80)
T PF14569_consen 1 PKPLKNLNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKGSPRVEGD-EEEDDV 79 (80)
T ss_dssp SS--S--SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT----TTS------S
T ss_pred CcChhhcCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccCCCCCCCC-ccccCC
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999 556655
Q ss_pred C
Q 003073 89 D 89 (850)
Q Consensus 89 d 89 (850)
|
T Consensus 80 d 80 (80)
T PF14569_consen 80 D 80 (80)
T ss_dssp -
T ss_pred C
Confidence 4
No 14
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=100.00 E-value=6.3e-36 Score=313.36 Aligned_cols=182 Identities=21% Similarity=0.284 Sum_probs=144.9
Q ss_pred CcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhc-CCCCCcceEEEeccccc
Q 003073 516 PRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DPNLGKHVCYVQFPQRF 594 (850)
Q Consensus 516 P~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~-DP~~G~~v~~VQtPQrF 594 (850)
++++|+.|+++ .|+||||||+++... .+++|||+++|||++ +.|++|++++++|. || +||+||+|++|
T Consensus 67 ~~v~~~~r~~~----~g~Kag~l~~~~~~~--~~~~~~i~~~DaD~~-~~p~~l~~~v~~~~~~~----~vg~vq~~~~~ 135 (254)
T cd04191 67 GRIYYRRRREN----TGRKAGNIADFCRRW--GSRYDYMVVLDADSL-MSGDTIVRLVRRMEANP----RAGIIQTAPKL 135 (254)
T ss_pred CcEEEEEcCCC----CCccHHHHHHHHHHh--CCCCCEEEEEeCCCC-CCHHHHHHHHHHHHhCC----CEEEEeCCcee
Confidence 46999999985 458999999999732 267899999999999 68999999999885 98 89999999999
Q ss_pred cCCCcc-ccc-cchhHHHHhhhhccccCCCC--ccccccchhhhhhhhcCCCCCCCCCCCCCCCcccccCCCccccCCcC
Q 003073 595 DGIDRN-DRY-ANRNTVFFDINLRGLDGIQG--PVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSS 670 (850)
Q Consensus 595 ~~id~~-Dry-an~~~vFfdi~~~glDgiqg--p~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (850)
.|.+.- .+. +-.+.+|..+.+.|++.|++ .+|+||+.++||+||... | +
T Consensus 136 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~~-----------------~-~--------- 188 (254)
T cd04191 136 IGAETLFARLQQFANRLYGPVFGRGLAAWQGGEGNYWGHNAIIRVAAFMEH-----------------C-A--------- 188 (254)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCccCccceEEEEEHHHHHHh-----------------c-C---------
Confidence 987632 111 11245666777888887765 579999999999999421 0 0
Q ss_pred ccCCccccCCCCCCCCCccccchhhhhcccCCCCchhhHHHhhhhHHHHhhcchHHHHHhHhhhcCCCCCCcchhhHHHH
Q 003073 671 KKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKE 750 (850)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~l~e 750 (850)
+.++||+-
T Consensus 189 -------------------------------------------------------------~~~i~g~g----------- 196 (254)
T cd04191 189 -------------------------------------------------------------LPVLPGRP----------- 196 (254)
T ss_pred -------------------------------------------------------------CccccCCC-----------
Confidence 01234432
Q ss_pred hhhhccccccccCccccccceeecccchhHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHHhhhhHH
Q 003073 751 AIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVE 827 (850)
Q Consensus 751 ai~v~sC~YE~~T~WG~evGW~y~SITEDi~Tg~rLh~rGwRsvY~~p~~aaf~G~aP~tls~~lkQR~RWA~G~lQ 827 (850)
||...+++||+++|++++.+||+++|.+.... .++++|+|++++++||.||++|++|
T Consensus 197 -------------------~~~~~~l~eD~~l~~~~~~~G~ri~~~~~~~~-~~~~~p~~~~~~~~qr~RW~~G~~q 253 (254)
T cd04191 197 -------------------PFGGHILSHDFVEAALMRRAGWEVRLAPDLEG-SYEECPPTLIDFLKRDRRWCQGNLQ 253 (254)
T ss_pred -------------------CCCCCeecHHHHHHHHHHHcCCEEEEccCCcc-eEeECCCCHHHHHHHHHHHHhhcCc
Confidence 46668999999999999999999999965432 2689999999999999999999987
No 15
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=100.00 E-value=2.3e-33 Score=328.94 Aligned_cols=323 Identities=19% Similarity=0.224 Sum_probs=219.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcccccchH---------HHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHhhhhhc
Q 003073 270 PYRMVIFLRLIILGIFLYYRIKNPVHNAI---------ALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYE 340 (850)
Q Consensus 270 ~yR~~i~~~l~~~~~yl~wRi~~~~~~a~---------~lWl~~vi~Ei~fa~~wiL~q~~kw~Pv~R~~~~drL~~r~e 340 (850)
..|+++++..++...|..|+....+.... .+..+++..+.+.+..-++..+.... .|... .+...-.
T Consensus 40 ~rr~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~lf~~~~~w~~~~~~~a~~g~~~~~~--~~~~~--~~~~~~~ 115 (691)
T PRK05454 40 LRRLILLGLTLAQTAVATWEMKAVLPYGGWTLLEPALLVLFALLFAWISLGFWTALMGFLQLLR--GRDKY--SISASAA 115 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCcc--cCCcccc
Confidence 56778888888889999999987654321 11222233333333333333332211 11111 0100000
Q ss_pred cCCCCCCCCcccEEEecCCCCCCCHHH----HHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhhHhHH
Q 003073 341 REGEPSQLAAVDIFVSTVDPLKEPPLV----TANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFC 416 (850)
Q Consensus 341 ~~~~~~~lP~VDVfVpt~nP~kEp~~v----v~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~WvPFC 416 (850)
.+......|+|+|+||+|| |++.. ++.|+.|+.+++|| ++++++|+|||+++.+...
T Consensus 116 ~~~~~~~~~~VaVliP~yN---Ed~~~v~~~L~a~~~Sl~~~~~~-~~~e~~vLdD~~d~~~~~~--------------- 176 (691)
T PRK05454 116 GDPPPPPEARTAILMPIYN---EDPARVFAGLRAMYESLAATGHG-AHFDFFILSDTRDPDIAAA--------------- 176 (691)
T ss_pred cCCCCCCCCceEEEEeCCC---CChHHHHHHHHHHHHHHHhcCCC-CCEEEEEEECCCChhHHHH---------------
Confidence 1123456899999999999 99864 55556677779998 5899999999998743210
Q ss_pred HhhCCCCCCchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCcc
Q 003073 417 KKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPG 496 (850)
Q Consensus 417 kk~~IepRaPe~YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~rdhp~ 496 (850)
|+ +.++++ .++ .
T Consensus 177 -------------------------------e~----~~~~~L-------~~~---~----------------------- 188 (691)
T PRK05454 177 -------------------------------EE----AAWLEL-------RAE---L----------------------- 188 (691)
T ss_pred -------------------------------HH----HHHHHH-------HHh---c-----------------------
Confidence 11 112221 110 0
Q ss_pred ceeeeeccCCCCCCCCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhh
Q 003073 497 MIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM 576 (850)
Q Consensus 497 ~iqV~l~~~G~~d~~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF 576 (850)
+ .-+++.|..|++ |.++||||||.+++.++ .++|||+++|||++ +.+|+|++++++|
T Consensus 189 ---------~-------~~~~i~yr~R~~----n~~~KaGNl~~~~~~~~--~~~eyivvLDADs~-m~~d~L~~lv~~m 245 (691)
T PRK05454 189 ---------G-------GEGRIFYRRRRR----NVGRKAGNIADFCRRWG--GAYDYMVVLDADSL-MSGDTLVRLVRLM 245 (691)
T ss_pred ---------C-------CCCcEEEEECCc----CCCccHHHHHHHHHhcC--CCcCEEEEEcCCCC-CCHHHHHHHHHHH
Confidence 0 003589988886 56789999999998433 56799999999999 6899999999988
Q ss_pred c-CCCCCcceEEEeccccccCCCccccccc----hhHHHHhhhhccccCCCC--ccccccchhhhhhhhcCCCCCCCCCC
Q 003073 577 M-DPNLGKHVCYVQFPQRFDGIDRNDRYAN----RNTVFFDINLRGLDGIQG--PVYVGTGCVFNRTALYGYEPPLKPKH 649 (850)
Q Consensus 577 ~-DP~~G~~v~~VQtPQrF~~id~~Dryan----~~~vFfdi~~~glDgiqg--p~yvGTGcvfRR~ALyG~~p~~~~~~ 649 (850)
. || ++|+||+++.+.|.+. .++. ...++.++...|++.||+ ..|+|++.++||+|+...
T Consensus 246 ~~dP----~vGlVQt~~~~~n~~s--lfaR~qqf~~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~~-------- 311 (691)
T PRK05454 246 EANP----RAGLIQTLPVAVGADT--LFARLQQFATRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAEH-------- 311 (691)
T ss_pred hhCc----CEEEEeCCccCcCCCC--HHHHHHHHHHHHHHHHHHhhhhhhccCccccccceEEEEHHHHHHh--------
Confidence 4 98 8999999999988653 2322 123555566788887773 569999999999999531
Q ss_pred CCCCCcccccCCCccccCCcCccCCccccCCCCCCCCCccccchhhhhcccCCCCchhhHHHhhhhHHHHhhcchHHHHH
Q 003073 650 RKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVA 729 (850)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~ 729 (850)
| | +..
T Consensus 312 ---------~-g------------------------------lp~----------------------------------- 316 (691)
T PRK05454 312 ---------C-G------------------------------LPP----------------------------------- 316 (691)
T ss_pred ---------c-C------------------------------Ccc-----------------------------------
Confidence 1 1 000
Q ss_pred hHhhhcCCCCCCcchhhHHHHhhhhccccccccCccccccceeecccchhHHHHHHHHHCCcEEEEeCCCCCcccccCCC
Q 003073 730 STLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPI 809 (850)
Q Consensus 730 S~l~e~GG~p~~~~~~~~l~eai~v~sC~YE~~T~WG~evGW~y~SITEDi~Tg~rLh~rGwRsvY~~p~~aaf~G~aP~ 809 (850)
+.+.| ||...+++||++++++|+++||+++|++. ....++++|+
T Consensus 317 --L~g~~---------------------------------p~~~~~LseD~~~a~~l~~~GyrV~~~pd-~~~~~ee~P~ 360 (691)
T PRK05454 317 --LPGRG---------------------------------PFGGHILSHDFVEAALMRRAGWGVWLAPD-LPGSYEELPP 360 (691)
T ss_pred --ccccC---------------------------------CCCCCcccHHHHHHHHHHHCCCEEEEcCc-cccccccCCC
Confidence 00112 34557999999999999999999999965 3334799999
Q ss_pred CHHHHHHHHHHHhhhhHHHHHh
Q 003073 810 NLSDRLNQVLRWALGSVEILFS 831 (850)
Q Consensus 810 tls~~lkQR~RWA~G~lQIlls 831 (850)
|+.++++||.||++|++|++..
T Consensus 361 tl~~~~~qr~RW~~G~lQ~l~~ 382 (691)
T PRK05454 361 NLLDELKRDRRWCQGNLQHLRL 382 (691)
T ss_pred CHHHHHHHHHHHHhchHHHHHH
Confidence 9999999999999999998853
No 16
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.6e-32 Score=299.47 Aligned_cols=234 Identities=30% Similarity=0.447 Sum_probs=174.8
Q ss_pred CCcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhhHhHHHhhCCCCCCch
Q 003073 348 LAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPE 427 (850)
Q Consensus 348 lP~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~WvPFCkk~~IepRaPe 427 (850)
+|.|+|+||+|| |++.++.+|+.|++++|||. ++|+|+|||+++.|++.+.|. +.+
T Consensus 53 ~p~vsviiP~yn---E~~~~~~~~l~s~~~~dyp~--~evivv~d~~~d~~~~~~~~~--------------~~~----- 108 (439)
T COG1215 53 LPKVSVIIPAYN---EEPEVLEETLESLLSQDYPR--YEVIVVDDGSTDETYEILEEL--------------GAE----- 108 (439)
T ss_pred CCceEEEEecCC---CchhhHHHHHHHHHhCCCCC--ceEEEECCCCChhHHHHHHHH--------------Hhh-----
Confidence 699999999999 99999999999999999994 999999999999666644331 100
Q ss_pred hhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeeccCCC
Q 003073 428 WYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGG 507 (850)
Q Consensus 428 ~YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~rdhp~~iqV~l~~~G~ 507 (850)
| + | .++
T Consensus 109 ----------------------------~-----------------~--------------------~-~~~-------- 114 (439)
T COG1215 109 ----------------------------Y-----------------G--------------------P-NFR-------- 114 (439)
T ss_pred ----------------------------c-----------------C--------------------c-ceE--------
Confidence 0 0 0 001
Q ss_pred CCCCCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhcCCCCCcceEE
Q 003073 508 LDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCY 587 (850)
Q Consensus 508 ~d~~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~DP~~G~~v~~ 587 (850)
++|. ...+++|+||+|.++. .+++|+|+++|||++ +.||+|+++++.|.|+. .+++
T Consensus 115 ----------~~~~------~~~~~gK~~al~~~l~----~~~~d~V~~~DaD~~-~~~d~l~~~~~~f~~~~---~~~v 170 (439)
T COG1215 115 ----------VIYP------EKKNGGKAGALNNGLK----RAKGDVVVILDADTV-PEPDALRELVSPFEDPP---VGAV 170 (439)
T ss_pred ----------EEec------cccCccchHHHHHHHh----hcCCCEEEEEcCCCC-CChhHHHHHHhhhcCCC---eeEE
Confidence 1111 1257899999999999 577999999999999 78999999999998874 3479
Q ss_pred EeccccccCCCccccccch-----hHHHHhhhhccccCCCCccccccchhhhhhhhcCCCCCCCCCCCCCCCcccccCCC
Q 003073 588 VQFPQRFDGIDRNDRYANR-----NTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGS 662 (850)
Q Consensus 588 VQtPQrF~~id~~Dryan~-----~~vFfdi~~~glDgiqgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~ 662 (850)
+|+|+.+.+.+.....+.. ...|+-....+.++....++.|++.+|||+||
T Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~G~~~~~rr~aL------------------------ 226 (439)
T COG1215 171 VGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASKGGLISFLSGSSSAFRRSAL------------------------ 226 (439)
T ss_pred eCCceeeecCChhhhcchhcchhhhhhHHHhhhhhhhcCCeEEEcceeeeEEHHHH------------------------
Confidence 9999998877641111111 11222122222222244455555555555555
Q ss_pred ccccCCcCccCCccccCCCCCCCCCccccchhhhhcccCCCCchhhHHHhhhhHHHHhhcchHHHHHhHhhhcCCCCCCc
Q 003073 663 RKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSA 742 (850)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~ 742 (850)
++.||
T Consensus 227 ----------------------------------------------------------------------~~~g~----- 231 (439)
T COG1215 227 ----------------------------------------------------------------------EEVGG----- 231 (439)
T ss_pred ----------------------------------------------------------------------HHhCC-----
Confidence 56675
Q ss_pred chhhHHHHhhhhccccccccCccccccceeecccchhHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHHh
Q 003073 743 THETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWA 822 (850)
Q Consensus 743 ~~~~~l~eai~v~sC~YE~~T~WG~evGW~y~SITEDi~Tg~rLh~rGwRsvY~~p~~aaf~G~aP~tls~~lkQR~RWA 822 (850)
|...++|||.+++++|+.+|||++|++.+.. ++++|+|+.++++||.||+
T Consensus 232 ----------------------------~~~~~i~ED~~lt~~l~~~G~~~~~~~~~~~--~~~~p~t~~~~~~Qr~RW~ 281 (439)
T COG1215 232 ----------------------------WLEDTITEDADLTLRLHLRGYRVVYVPEAIV--WTEAPETLKELWRQRLRWA 281 (439)
T ss_pred ----------------------------CCCCceeccHHHHHHHHHCCCeEEEeecceE--eeeCcccHHHHHHHHHHHH
Confidence 4557999999999999999999999977544 8999999999999999999
Q ss_pred hhhHHHHHhh
Q 003073 823 LGSVEILFSR 832 (850)
Q Consensus 823 ~G~lQIllsr 832 (850)
+|++|++..+
T Consensus 282 ~g~~~~~~~~ 291 (439)
T COG1215 282 RGGLQVLLLH 291 (439)
T ss_pred cccceeeehh
Confidence 9999999763
No 17
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=99.97 E-value=3.8e-30 Score=287.47 Aligned_cols=231 Identities=21% Similarity=0.232 Sum_probs=170.3
Q ss_pred CCCCcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhhHhHHHhhCCCCCC
Q 003073 346 SQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRA 425 (850)
Q Consensus 346 ~~lP~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~WvPFCkk~~IepRa 425 (850)
...|.|+|+||+|| |+ ..+.+||.|+++++|| +++|+|+|||+++.|.+.+.+.. ++
T Consensus 72 ~~~p~vsViIP~yN---E~-~~i~~~l~sll~q~yp--~~eIivVdDgs~D~t~~~~~~~~----------~~------- 128 (444)
T PRK14583 72 KGHPLVSILVPCFN---EG-LNARETIHAALAQTYT--NIEVIAINDGSSDDTAQVLDALL----------AE------- 128 (444)
T ss_pred CCCCcEEEEEEeCC---CH-HHHHHHHHHHHcCCCC--CeEEEEEECCCCccHHHHHHHHH----------Hh-------
Confidence 35799999999999 88 5689999999999999 59999999999986655443310 00
Q ss_pred chhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeeccC
Q 003073 426 PEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGEN 505 (850)
Q Consensus 426 Pe~YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~rdhp~~iqV~l~~~ 505 (850)
+
T Consensus 129 --------------------------------------------------------------------~----------- 129 (444)
T PRK14583 129 --------------------------------------------------------------------D----------- 129 (444)
T ss_pred --------------------------------------------------------------------C-----------
Confidence 0
Q ss_pred CCCCCCCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhh-cCCCCCcc
Q 003073 506 GGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKH 584 (850)
Q Consensus 506 G~~d~~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF-~DP~~G~~ 584 (850)
|++.++.+++ ..+||+|+|+++. .+++|||+++|||++ ++|++|++++..| .|| +
T Consensus 130 ----------~~v~vv~~~~-----n~Gka~AlN~gl~----~a~~d~iv~lDAD~~-~~~d~L~~lv~~~~~~~----~ 185 (444)
T PRK14583 130 ----------PRLRVIHLAH-----NQGKAIALRMGAA----AARSEYLVCIDGDAL-LDKNAVPYLVAPLIANP----R 185 (444)
T ss_pred ----------CCEEEEEeCC-----CCCHHHHHHHHHH----hCCCCEEEEECCCCC-cCHHHHHHHHHHHHhCC----C
Confidence 2244444433 2469999999998 478999999999999 6899999999866 567 7
Q ss_pred eEEEeccccccCCCccccccc----hhHHHHhhhhccccCCCCccc-cccchhhhhhhhcCCCCCCCCCCCCCCCccccc
Q 003073 585 VCYVQFPQRFDGIDRNDRYAN----RNTVFFDINLRGLDGIQGPVY-VGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLF 659 (850)
Q Consensus 585 v~~VQtPQrF~~id~~Dryan----~~~vFfdi~~~glDgiqgp~y-vGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~ 659 (850)
++.||+..+..+.+ ..++. +...++....++..-.+.++. .|++++|||+||
T Consensus 186 ~g~v~g~~~~~~~~--~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~sG~~~~~rr~al--------------------- 242 (444)
T PRK14583 186 TGAVTGNPRIRTRS--TLIGRVQVGEFSSIIGLIKRTQRVYGQVFTVSGVVAAFRRRAL--------------------- 242 (444)
T ss_pred eEEEEccceecCCC--cchhhHHHHHHHHHHHHHHHHHHHhCCceEecCceeEEEHHHH---------------------
Confidence 99999987765432 11111 222333334444333333322 244444555444
Q ss_pred CCCccccCCcCccCCccccCCCCCCCCCccccchhhhhcccCCCCchhhHHHhhhhHHHHhhcchHHHHHhHhhhcCCCC
Q 003073 660 GGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVP 739 (850)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p 739 (850)
+++||+
T Consensus 243 -------------------------------------------------------------------------~~vGg~- 248 (444)
T PRK14583 243 -------------------------------------------------------------------------ADVGYW- 248 (444)
T ss_pred -------------------------------------------------------------------------HHcCCC-
Confidence 567864
Q ss_pred CCcchhhHHHHhhhhccccccccCccccccceeecccchhHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHH
Q 003073 740 QSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVL 819 (850)
Q Consensus 740 ~~~~~~~~l~eai~v~sC~YE~~T~WG~evGW~y~SITEDi~Tg~rLh~rGwRsvY~~p~~aaf~G~aP~tls~~lkQR~ 819 (850)
..+.++||++++++|+.+||++.|++.... ++++|+|++++++||.
T Consensus 249 --------------------------------~~~~i~ED~dl~~rl~~~G~~i~~~p~a~~--~~~~p~t~~~~~~Qr~ 294 (444)
T PRK14583 249 --------------------------------SPDMITEDIDISWKLQLKHWSVFFEPRGLC--WILMPETLRGLWKQRL 294 (444)
T ss_pred --------------------------------CCCcccccHHHHHHHHHcCCeEEEeeccEE--eeeCCCCHHHHHHHHH
Confidence 446899999999999999999999976444 8999999999999999
Q ss_pred HHhhhhHHHHHhhc
Q 003073 820 RWALGSVEILFSRH 833 (850)
Q Consensus 820 RWA~G~lQIllsr~ 833 (850)
||++|.+|+++++.
T Consensus 295 RW~~G~~~~~~~~~ 308 (444)
T PRK14583 295 RWAQGGAEVFLKNM 308 (444)
T ss_pred HHhCcHHHHHHHHH
Confidence 99999999998753
No 18
>PRK11204 N-glycosyltransferase; Provisional
Probab=99.96 E-value=1.5e-28 Score=270.13 Aligned_cols=237 Identities=25% Similarity=0.305 Sum_probs=169.1
Q ss_pred CCCCCcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhhHhHHHhhCCCCC
Q 003073 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPR 424 (850)
Q Consensus 345 ~~~lP~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~WvPFCkk~~IepR 424 (850)
....|.|+|+||+|| |+ ..+.+|+.|+++++|| +++|+|+|||+++.|.+.+.+.
T Consensus 50 ~~~~p~vsViIp~yn---e~-~~i~~~l~sl~~q~yp--~~eiiVvdD~s~d~t~~~l~~~------------------- 104 (420)
T PRK11204 50 LKEYPGVSILVPCYN---EG-ENVEETISHLLALRYP--NYEVIAINDGSSDNTGEILDRL------------------- 104 (420)
T ss_pred cCCCCCEEEEEecCC---CH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCccHHHHHHHH-------------------
Confidence 346899999999999 86 6889999999999999 6899999999998655433221
Q ss_pred CchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeecc
Q 003073 425 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 504 (850)
Q Consensus 425 aPe~YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~rdhp~~iqV~l~~ 504 (850)
.+
T Consensus 105 ------------------------------------------~~------------------------------------ 106 (420)
T PRK11204 105 ------------------------------------------AA------------------------------------ 106 (420)
T ss_pred ------------------------------------------HH------------------------------------
Confidence 00
Q ss_pred CCCCCCCCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhh-cCCCCCc
Q 003073 505 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGK 583 (850)
Q Consensus 505 ~G~~d~~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF-~DP~~G~ 583 (850)
..|++.++.+++ ..+||+|+|.+++ .+++|||+++|||.+ +.|++|.+++..| .||
T Consensus 107 ---------~~~~v~~i~~~~-----n~Gka~aln~g~~----~a~~d~i~~lDaD~~-~~~d~L~~l~~~~~~~~---- 163 (420)
T PRK11204 107 ---------QIPRLRVIHLAE-----NQGKANALNTGAA----AARSEYLVCIDGDAL-LDPDAAAYMVEHFLHNP---- 163 (420)
T ss_pred ---------hCCcEEEEEcCC-----CCCHHHHHHHHHH----HcCCCEEEEECCCCC-CChhHHHHHHHHHHhCC----
Confidence 013466666554 2469999999998 578999999999999 6899999999988 677
Q ss_pred ceEEEeccccccCCCccccccchhHHHHhhhhccccCCCCccccccchhhhhhhhcCCCCCCCCCCCCCCCcccccCCCc
Q 003073 584 HVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSR 663 (850)
Q Consensus 584 ~v~~VQtPQrF~~id~~Dryan~~~vFfdi~~~glDgiqgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~ 663 (850)
+++.||+..+..+... ..+..+...|... . |..-+-+.++|.. . |.
T Consensus 164 ~v~~v~g~~~~~~~~~--~~~~~~~~~~~~~------------~--~~~~~~~~~~~~~------------~--~~---- 209 (420)
T PRK11204 164 RVGAVTGNPRIRNRST--LLGRIQVGEFSSI------------I--GLIKRAQRVYGRV------------F--TV---- 209 (420)
T ss_pred CeEEEECCceeccchh--HHHHHHHHHHHHh------------h--hHHHHHHHHhCCc------------e--Ee----
Confidence 8999999877654321 1111111111100 0 0000111111100 0 00
Q ss_pred cccCCcCccCCccccCCCCCCCCCccccchhhhhcccCCCCchhhHHHhhhhHHHHhhcchHHHHHhHhhhcCCCCCCcc
Q 003073 664 KKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSAT 743 (850)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~ 743 (850)
-|....|+++++.++||+.
T Consensus 210 ---------------------------------------------------------~G~~~~~rr~~l~~vgg~~---- 228 (420)
T PRK11204 210 ---------------------------------------------------------SGVITAFRKSALHEVGYWS---- 228 (420)
T ss_pred ---------------------------------------------------------cceeeeeeHHHHHHhCCCC----
Confidence 0333455566667788754
Q ss_pred hhhHHHHhhhhccccccccCccccccceeecccchhHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHHhh
Q 003073 744 HETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWAL 823 (850)
Q Consensus 744 ~~~~l~eai~v~sC~YE~~T~WG~evGW~y~SITEDi~Tg~rLh~rGwRsvY~~p~~aaf~G~aP~tls~~lkQR~RWA~ 823 (850)
...++||++++++|+++||++.|++.... +++.|+|++++++||.||++
T Consensus 229 -----------------------------~~~~~ED~~l~~rl~~~G~~i~~~p~~~~--~~~~p~t~~~~~~Qr~RW~~ 277 (420)
T PRK11204 229 -----------------------------TDMITEDIDISWKLQLRGWDIRYEPRALC--WILMPETLKGLWKQRLRWAQ 277 (420)
T ss_pred -----------------------------CCcccchHHHHHHHHHcCCeEEeccccEE--EeECcccHHHHHHHHHHHhc
Confidence 35789999999999999999999976444 89999999999999999999
Q ss_pred hhHHHHHhhc
Q 003073 824 GSVEILFSRH 833 (850)
Q Consensus 824 G~lQIllsr~ 833 (850)
|.+|.++++.
T Consensus 278 G~~~~l~~~~ 287 (420)
T PRK11204 278 GGAEVLLKNF 287 (420)
T ss_pred CHHHHHHHHH
Confidence 9999998753
No 19
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.96 E-value=2.7e-28 Score=245.67 Aligned_cols=228 Identities=22% Similarity=0.334 Sum_probs=164.8
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhhHhHHHhhCCCCCCchh
Q 003073 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 428 (850)
Q Consensus 349 P~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~WvPFCkk~~IepRaPe~ 428 (850)
|.|+|+||+|| |. ..+.++|.|+++++||.+++.|+|+|| +++.|++.+.+.. + +
T Consensus 1 p~vSViIp~yN---e~-~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~~---~-------~---------- 55 (232)
T cd06437 1 PMVTVQLPVFN---EK-YVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREIV---E-------E---------- 55 (232)
T ss_pred CceEEEEecCC---cH-HHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHHH---H-------H----------
Confidence 67999999999 86 688999999999999998999999998 7776777654421 0 0
Q ss_pred hhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeeccCCCC
Q 003073 429 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 508 (850)
Q Consensus 429 YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~rdhp~~iqV~l~~~G~~ 508 (850)
|..
T Consensus 56 ---------------------------~~~-------------------------------------------------- 58 (232)
T cd06437 56 ---------------------------YAA-------------------------------------------------- 58 (232)
T ss_pred ---------------------------Hhh--------------------------------------------------
Confidence 000
Q ss_pred CCCCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhcCCCCCcceEEE
Q 003073 509 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYV 588 (850)
Q Consensus 509 d~~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~DP~~G~~v~~V 588 (850)
.-++++++.+.+++| +|++|+|++++ .++|+||+++|||.+ +.|++|.+++.+|.+| ++++|
T Consensus 59 -----~~~~i~~~~~~~~~G----~k~~a~n~g~~----~a~~~~i~~~DaD~~-~~~~~l~~~~~~~~~~----~v~~v 120 (232)
T cd06437 59 -----QGVNIKHVRRADRTG----YKAGALAEGMK----VAKGEYVAIFDADFV-PPPDFLQKTPPYFADP----KLGFV 120 (232)
T ss_pred -----cCCceEEEECCCCCC----CchHHHHHHHH----hCCCCEEEEEcCCCC-CChHHHHHhhhhhcCC----CeEEE
Confidence 003477887776555 69999999998 579999999999999 5899999988888888 79999
Q ss_pred eccccccCCCccc--ccc-chhHHHHhhhhccccCCCCcc-ccccchhhhhhhhcCCCCCCCCCCCCCCCcccccCCCcc
Q 003073 589 QFPQRFDGIDRND--RYA-NRNTVFFDINLRGLDGIQGPV-YVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRK 664 (850)
Q Consensus 589 QtPQrF~~id~~D--rya-n~~~vFfdi~~~glDgiqgp~-yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~~ 664 (850)
|....+.+.+.+- ++. -....+|.+.+.+.......+ ..|+++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------------------------------- 167 (232)
T cd06437 121 QTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSSTGLFFNFNGTAG--------------------------------- 167 (232)
T ss_pred ecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhhcCCeEEeccchh---------------------------------
Confidence 9977655443221 100 001112222222222111111 233333
Q ss_pred ccCCcCccCCccccCCCCCCCCCccccchhhhhcccCCCCchhhHHHhhhhHHHHhhcchHHHHHhHhhhcCCCCCCcch
Q 003073 665 KNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATH 744 (850)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~ 744 (850)
.|++++++++||++.
T Consensus 168 -------------------------------------------------------------~~rr~~~~~vgg~~~---- 182 (232)
T cd06437 168 -------------------------------------------------------------VWRKECIEDAGGWNH---- 182 (232)
T ss_pred -------------------------------------------------------------hhhHHHHHHhCCCCC----
Confidence 455555567888753
Q ss_pred hhHHHHhhhhccccccccCccccccceeecccchhHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHHhhh
Q 003073 745 ETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALG 824 (850)
Q Consensus 745 ~~~l~eai~v~sC~YE~~T~WG~evGW~y~SITEDi~Tg~rLh~rGwRsvY~~p~~aaf~G~aP~tls~~lkQR~RWA~G 824 (850)
.++.||+++++||+.+||+++|++... ++...|+|+.++++||+||++|
T Consensus 183 -----------------------------~~~~ED~~l~~rl~~~G~~~~~~~~~~--v~~~~~~~~~~~~~q~~rW~~g 231 (232)
T cd06437 183 -----------------------------DTLTEDLDLSYRAQLKGWKFVYLDDVV--VPAELPASMSAYRSQQHRWSKG 231 (232)
T ss_pred -----------------------------CcchhhHHHHHHHHHCCCeEEEeccce--eeeeCCcCHHHHHHHHHHhccC
Confidence 457899999999999999999996544 3899999999999999999998
Q ss_pred h
Q 003073 825 S 825 (850)
Q Consensus 825 ~ 825 (850)
.
T Consensus 232 ~ 232 (232)
T cd06437 232 P 232 (232)
T ss_pred C
Confidence 4
No 20
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.96 E-value=1.8e-28 Score=243.78 Aligned_cols=229 Identities=38% Similarity=0.600 Sum_probs=177.8
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhhHhHHHhhCCCCCCchh
Q 003073 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 428 (850)
Q Consensus 349 P~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~WvPFCkk~~IepRaPe~ 428 (850)
|.|+|+||+|| |++..+..++.|+++++||.++++|+|+|||+++.|.+.+.+
T Consensus 1 p~vsviip~~n---~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~------------------------ 53 (234)
T cd06421 1 PTVDVFIPTYN---EPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAE------------------------ 53 (234)
T ss_pred CceEEEEecCC---CcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHH------------------------
Confidence 68999999999 888899999999999999988899999999998754332211
Q ss_pred hhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeeccCCCC
Q 003073 429 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 508 (850)
Q Consensus 429 YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~rdhp~~iqV~l~~~G~~ 508 (850)
+.. ++
T Consensus 54 -------------------------------------~~~-----------------------~~--------------- 58 (234)
T cd06421 54 -------------------------------------LGV-----------------------EY--------------- 58 (234)
T ss_pred -------------------------------------hhc-----------------------cc---------------
Confidence 000 00
Q ss_pred CCCCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhcC-CCCCcceEE
Q 003073 509 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMD-PNLGKHVCY 587 (850)
Q Consensus 509 d~~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~D-P~~G~~v~~ 587 (850)
++.|+.+++ +.++|+||+|++++ .+++|||+++|+|.+ .+|++|.+++..|.+ | ++++
T Consensus 59 --------~~~~~~~~~----~~~~~~~~~n~~~~----~a~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~~----~~~~ 117 (234)
T cd06421 59 --------GYRYLTRPD----NRHAKAGNLNNALA----HTTGDFVAILDADHV-PTPDFLRRTLGYFLDDP----KVAL 117 (234)
T ss_pred --------CceEEEeCC----CCCCcHHHHHHHHH----hCCCCEEEEEccccC-cCccHHHHHHHHHhcCC----CeEE
Confidence 145555554 34589999999999 468999999999999 589999999999876 6 7999
Q ss_pred EeccccccCCCccc----cccchhHHHHhhhhccccCCCCccccccchhhhhhhhcCCCCCCCCCCCCCCCcccccCCCc
Q 003073 588 VQFPQRFDGIDRND----RYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSR 663 (850)
Q Consensus 588 VQtPQrF~~id~~D----ryan~~~vFfdi~~~glDgiqgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~ 663 (850)
|++++.+.+.+..+ .+......|+.....+...+....+.|++.+|||++|
T Consensus 118 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~------------------------- 172 (234)
T cd06421 118 VQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRWGAAFCCGSGAVVRREAL------------------------- 172 (234)
T ss_pred EecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCceecCceeeEeHHHH-------------------------
Confidence 99999988766532 2333445555555555444455566677777766666
Q ss_pred cccCCcCccCCccccCCCCCCCCCccccchhhhhcccCCCCchhhHHHhhhhHHHHhhcchHHHHHhHhhhcCCCCCCcc
Q 003073 664 KKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSAT 743 (850)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~ 743 (850)
+++||++.
T Consensus 173 ---------------------------------------------------------------------~~ig~~~~--- 180 (234)
T cd06421 173 ---------------------------------------------------------------------DEIGGFPT--- 180 (234)
T ss_pred ---------------------------------------------------------------------HHhCCCCc---
Confidence 34677652
Q ss_pred hhhHHHHhhhhccccccccCccccccceeecccchhHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHHhh
Q 003073 744 HETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWAL 823 (850)
Q Consensus 744 ~~~~l~eai~v~sC~YE~~T~WG~evGW~y~SITEDi~Tg~rLh~rGwRsvY~~p~~aaf~G~aP~tls~~lkQR~RWA~ 823 (850)
..+.||++++++|+.+||+++|++.+.. ++..|.+++.+++||.||.+
T Consensus 181 ------------------------------~~~~eD~~l~~r~~~~g~~i~~~~~~~~--~~~~~~~~~~~~~q~~rw~~ 228 (234)
T cd06421 181 ------------------------------DSVTEDLATSLRLHAKGWRSVYVPEPLA--AGLAPETLAAYIKQRLRWAR 228 (234)
T ss_pred ------------------------------cceeccHHHHHHHHHcCceEEEecCccc--cccCCccHHHHHHHHHHHhc
Confidence 3567999999999999999999977554 89999999999999999999
Q ss_pred hhHHHH
Q 003073 824 GSVEIL 829 (850)
Q Consensus 824 G~lQIl 829 (850)
|.+|+|
T Consensus 229 ~~~~~~ 234 (234)
T cd06421 229 GMLQIL 234 (234)
T ss_pred CCeeeC
Confidence 999863
No 21
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.95 E-value=3.4e-27 Score=240.25 Aligned_cols=233 Identities=24% Similarity=0.303 Sum_probs=167.1
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhhHhHHHhhCCCCCCchh
Q 003073 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 428 (850)
Q Consensus 349 P~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~WvPFCkk~~IepRaPe~ 428 (850)
|.|+|+||+|| |+ ..+.+||.|+++++||.++++|+|+|||+++.|.+.+.+.. .
T Consensus 1 p~vsIiIp~~N---e~-~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~---~------------------ 55 (241)
T cd06427 1 PVYTILVPLYK---EA-EVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALR---L------------------ 55 (241)
T ss_pred CeEEEEEecCC---cH-HHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhc---c------------------
Confidence 78999999999 87 78999999999999998889999999999986655432200 0
Q ss_pred hhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeeccCCCC
Q 003073 429 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 508 (850)
Q Consensus 429 YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~rdhp~~iqV~l~~~G~~ 508 (850)
+
T Consensus 56 ---------------------------------------------~---------------------------------- 56 (241)
T cd06427 56 ---------------------------------------------P---------------------------------- 56 (241)
T ss_pred ---------------------------------------------C----------------------------------
Confidence 0
Q ss_pred CCCCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhcCCCCCcceEEE
Q 003073 509 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYV 588 (850)
Q Consensus 509 d~~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~DP~~G~~v~~V 588 (850)
...+++++.+.+ ..+|++|+|++++ .++|+||+++|+|.+ ..|++|.+++.+|... ..++++|
T Consensus 57 -----~~~~i~~~~~~~-----~~G~~~a~n~g~~----~a~gd~i~~~DaD~~-~~~~~l~~~~~~~~~~--~~~v~~~ 119 (241)
T cd06427 57 -----SIFRVVVVPPSQ-----PRTKPKACNYALA----FARGEYVVIYDAEDA-PDPDQLKKAVAAFARL--DDKLACV 119 (241)
T ss_pred -----CCeeEEEecCCC-----CCchHHHHHHHHH----hcCCCEEEEEcCCCC-CChHHHHHHHHHHHhc--CCCEEEE
Confidence 001244443321 2479999999998 578999999999999 5899999999988521 1289999
Q ss_pred eccccccCCCccc---cccchhHHHHhhhhccccCCCCccc-cccchhhhhhhhcCCCCCCCCCCCCCCCcccccCCCcc
Q 003073 589 QFPQRFDGIDRND---RYANRNTVFFDINLRGLDGIQGPVY-VGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRK 664 (850)
Q Consensus 589 QtPQrF~~id~~D---ryan~~~vFfdi~~~glDgiqgp~y-vGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~~ 664 (850)
|++..+.+...+- .+......+|...+++....+.++. .|+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----------------------------------- 164 (241)
T cd06427 120 QAPLNYYNARENWLTRMFALEYAAWFDYLLPGLARLGLPIPLGGT----------------------------------- 164 (241)
T ss_pred eCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCeeecCCc-----------------------------------
Confidence 9988876543220 0111111223333343333332221 233
Q ss_pred ccCCcCccCCccccCCCCCCCCCccccchhhhhcccCCCCchhhHHHhhhhHHHHhhcchHHHHHhHhhhcCCCCCCcch
Q 003073 665 KNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATH 744 (850)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~ 744 (850)
...|++++++++||+..
T Consensus 165 -----------------------------------------------------------~~~~rr~~~~~vgg~~~---- 181 (241)
T cd06427 165 -----------------------------------------------------------SNHFRTDVLRELGGWDP---- 181 (241)
T ss_pred -----------------------------------------------------------hHHhhHHHHHHcCCCCc----
Confidence 33445555567787642
Q ss_pred hhHHHHhhhhccccccccCccccccceeecccchhHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHHhhh
Q 003073 745 ETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALG 824 (850)
Q Consensus 745 ~~~l~eai~v~sC~YE~~T~WG~evGW~y~SITEDi~Tg~rLh~rGwRsvY~~p~~aaf~G~aP~tls~~lkQR~RWA~G 824 (850)
..++||+++++|++.+|||++|+.. .. +...|+|++.+++||.||+.|
T Consensus 182 -----------------------------~~~~eD~~l~~rl~~~G~r~~~~~~-~~--~~~~~~~~~~~~~q~~Rw~~g 229 (241)
T cd06427 182 -----------------------------FNVTEDADLGLRLARAGYRTGVLNS-TT--LEEANNALGNWIRQRSRWIKG 229 (241)
T ss_pred -----------------------------ccchhhHHHHHHHHHCCceEEEecc-cc--cccCcHhHHHHHHHHHHHhcc
Confidence 3678999999999999999999953 33 689999999999999999999
Q ss_pred hHHHHHhh
Q 003073 825 SVEILFSR 832 (850)
Q Consensus 825 ~lQIllsr 832 (850)
.+|++..+
T Consensus 230 ~~~~~~~~ 237 (241)
T cd06427 230 YMQTWLVH 237 (241)
T ss_pred HHHHHHHH
Confidence 99999764
No 22
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=99.95 E-value=5.9e-27 Score=261.91 Aligned_cols=244 Identities=17% Similarity=0.257 Sum_probs=166.0
Q ss_pred CCCCCcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhhHhHHHhhCCCCC
Q 003073 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPR 424 (850)
Q Consensus 345 ~~~lP~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~WvPFCkk~~IepR 424 (850)
+..+|.|+|+||+|| |+ ..+.+||.|++.++||.++++|+|+|||+++.|.+.+.+++ ++
T Consensus 45 ~~~~P~vsVIIP~yN---e~-~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~----------~~------ 104 (439)
T TIGR03111 45 IGKLPDITIIIPVYN---SE-DTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQ----------NE------ 104 (439)
T ss_pred cCCCCCEEEEEEeCC---Ch-HHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHH----------Hh------
Confidence 457899999999999 87 79999999999999999999999999999997766554421 00
Q ss_pred CchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeecc
Q 003073 425 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 504 (850)
Q Consensus 425 aPe~YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~rdhp~~iqV~l~~ 504 (850)
+|+ +
T Consensus 105 ---------------------------------------------------------------------~~~-v------ 108 (439)
T TIGR03111 105 ---------------------------------------------------------------------FPG-L------ 108 (439)
T ss_pred ---------------------------------------------------------------------CCC-e------
Confidence 000 0
Q ss_pred CCCCCCCCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhc-CCCCCc
Q 003073 505 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DPNLGK 583 (850)
Q Consensus 505 ~G~~d~~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~-DP~~G~ 583 (850)
.++++ + +.++||+|+|++++ .++++||+++|||++ ++|++|++++..|. ||
T Consensus 109 ------------~v~~~--~-----~~~Gka~AlN~gl~----~s~g~~v~~~DaD~~-~~~d~L~~l~~~f~~~~---- 160 (439)
T TIGR03111 109 ------------SLRYM--N-----SDQGKAKALNAAIY----NSIGKYIIHIDSDGK-LHKDAIKNMVTRFENNP---- 160 (439)
T ss_pred ------------EEEEe--C-----CCCCHHHHHHHHHH----HccCCEEEEECCCCC-cChHHHHHHHHHHHhCC----
Confidence 12222 1 12589999999998 578999999999999 69999999999885 77
Q ss_pred ceEEEeccccccCCCcccc-------ccchhHHHHhhhhccccCCCCccccccchhhhhhhhcCCCCCCCCCCCCCCCcc
Q 003073 584 HVCYVQFPQRFDGIDRNDR-------YANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLS 656 (850)
Q Consensus 584 ~v~~VQtPQrF~~id~~Dr-------yan~~~vFfdi~~~glDgiqgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~ 656 (850)
+++.|+..+.-. .+..+. +..+.. ||... +..+.|. +.... .+..++
T Consensus 161 ~v~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~-~~~y~--------------------~~~l~~r-~~~s~--~~~~~~- 214 (439)
T TIGR03111 161 DIHAMTGVILTD-KELIEKTKGRFLKLIRRCE-YFEYA--------------------QAFLAGR-NFESQ--VNSLFT- 214 (439)
T ss_pred CeEEEEeEEecC-chhhhhhcchhhhHhHHhH-HHHHH--------------------HHHHhhh-HHHHh--cCCeEE-
Confidence 677776544221 110000 000000 01100 0000000 00000 000000
Q ss_pred cccCCCccccCCcCccCCccccCCCCCCCCCccccchhhhhcccCCCCchhhHHHhhhhHHHHhhcchHHHHHhHhhhcC
Q 003073 657 SLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENG 736 (850)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~G 736 (850)
-.|....|+++++.+.|
T Consensus 215 ---------------------------------------------------------------~sGa~~~~Rr~~l~~vg 231 (439)
T TIGR03111 215 ---------------------------------------------------------------LSGAFSAFRRETILKTQ 231 (439)
T ss_pred ---------------------------------------------------------------EccHHHhhhHHHHHHhC
Confidence 01455677888888899
Q ss_pred CCCCCcchhhHHHHhhhhccccccccCccccccceeecccchhHHHHHHHHH-CCcEEEEeCCCCCcccccCCCCHHHHH
Q 003073 737 GVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHA-RGWRSIYCMPKRPAFKGSAPINLSDRL 815 (850)
Q Consensus 737 G~p~~~~~~~~l~eai~v~sC~YE~~T~WG~evGW~y~SITEDi~Tg~rLh~-rGwRsvY~~p~~aaf~G~aP~tls~~l 815 (850)
|++. .+++||++++++|+. .|+++.|+.++ .++.++|+|+++++
T Consensus 232 gf~~---------------------------------~~i~ED~~l~~rl~~~~g~kv~~~~~a--~~~~~~p~t~~~~~ 276 (439)
T TIGR03111 232 LYNS---------------------------------ETVGEDTDMTFQIRELLDGKVYLCENA--IFYVDPIDGLNKLY 276 (439)
T ss_pred CCCC---------------------------------CCcCccHHHHHHHHHhcCCeEEECCCC--EEEEECCcCHHHHH
Confidence 8653 689999999999975 69999998653 34899999999999
Q ss_pred HHHHHHhhhhHHHHHhhcCcc
Q 003073 816 NQVLRWALGSVEILFSRHCPI 836 (850)
Q Consensus 816 kQR~RWA~G~lQIllsr~~Pl 836 (850)
+||.||++|.+|++.....+.
T Consensus 277 ~QR~RW~rG~~qv~~~~~~~~ 297 (439)
T TIGR03111 277 TQRQRWQRGELEVSHMFFESA 297 (439)
T ss_pred HHHHHHhccHHHHHHHHHhhh
Confidence 999999999999997644333
No 23
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.95 E-value=1.1e-26 Score=233.21 Aligned_cols=230 Identities=27% Similarity=0.434 Sum_probs=161.3
Q ss_pred cEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHH-HHHhhHHhhhhhHhHHHhhCCCCCCchhhh
Q 003073 352 DIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFE-ALSETSEFARKWVPFCKKYNIEPRAPEWYF 430 (850)
Q Consensus 352 DVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e-~L~Ea~~FA~~WvPFCkk~~IepRaPe~YF 430 (850)
+|+||+|| |++..+.+++.|++.++|| .++|+|+|||+.+.|+. .+.+ +|+++
T Consensus 1 siiip~~n---e~~~~l~~~l~sl~~q~~~--~~eiiVvdd~s~D~t~~~~i~~----------~~~~~----------- 54 (236)
T cd06435 1 SIHVPCYE---EPPEMVKETLDSLAALDYP--NFEVIVIDNNTKDEALWKPVEA----------HCAQL----------- 54 (236)
T ss_pred CeeEeeCC---CcHHHHHHHHHHHHhCCCC--CcEEEEEeCCCCchhHHHHHHH----------HHHHh-----------
Confidence 58999999 9888999999999999999 58999999999885431 1111 00000
Q ss_pred hhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeeccCCCCCC
Q 003073 431 AQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDA 510 (850)
Q Consensus 431 ~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~rdhp~~iqV~l~~~G~~d~ 510 (850)
+
T Consensus 55 ---------------------------------------------------------------------------~---- 55 (236)
T cd06435 55 ---------------------------------------------------------------------------G---- 55 (236)
T ss_pred ---------------------------------------------------------------------------C----
Confidence 0
Q ss_pred CCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhcCCCCCcceEEEec
Q 003073 511 EGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQF 590 (850)
Q Consensus 511 ~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~DP~~G~~v~~VQt 590 (850)
+++.++..++.+ .+|+||+|.+++.. ..+++||+++|+|.+ ..|++|.+++.+|.+| ++++|++
T Consensus 56 -----~~i~~i~~~~~~----G~~~~a~n~g~~~a--~~~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~~ 119 (236)
T cd06435 56 -----ERFRFFHVEPLP----GAKAGALNYALERT--APDAEIIAVIDADYQ-VEPDWLKRLVPIFDDP----RVGFVQA 119 (236)
T ss_pred -----CcEEEEEcCCCC----CCchHHHHHHHHhc--CCCCCEEEEEcCCCC-cCHHHHHHHHHHhcCC----CeeEEec
Confidence 125556555433 36999999999842 135899999999998 6899999999999877 7999999
Q ss_pred cccccCCCcccccc----chhHHHHhhhhccccCCCCccccccchhhhhhhhcCCCCCCCCCCCCCCCcccccCCCcccc
Q 003073 591 PQRFDGIDRNDRYA----NRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKN 666 (850)
Q Consensus 591 PQrF~~id~~Drya----n~~~vFfdi~~~glDgiqgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~~~~ 666 (850)
+..+..... ..+. .....+|...++.....+..+..|++++
T Consensus 120 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---------------------------------- 164 (236)
T cd06435 120 PQDYRDGEE-SLFKRMCYAEYKGFFDIGMVSRNERNAIIQHGTMCL---------------------------------- 164 (236)
T ss_pred CccccCCCc-cHHHHHHhHHHHHHHHHHhccccccCceEEecceEE----------------------------------
Confidence 866543211 1110 0001112222222222222223333333
Q ss_pred CCcCccCCccccCCCCCCCCCccccchhhhhcccCCCCchhhHHHhhhhHHHHhhcchHHHHHhHhhhcCCCCCCcchhh
Q 003073 667 SKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHET 746 (850)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~ 746 (850)
|+++++.++||++.
T Consensus 165 ------------------------------------------------------------~rr~~~~~iGgf~~------ 178 (236)
T cd06435 165 ------------------------------------------------------------IRRSALDDVGGWDE------ 178 (236)
T ss_pred ------------------------------------------------------------EEHHHHHHhCCCCC------
Confidence 44455567787653
Q ss_pred HHHHhhhhccccccccCccccccceeecccchhHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHHhhhhH
Q 003073 747 LLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSV 826 (850)
Q Consensus 747 ~l~eai~v~sC~YE~~T~WG~evGW~y~SITEDi~Tg~rLh~rGwRsvY~~p~~aaf~G~aP~tls~~lkQR~RWA~G~l 826 (850)
....||++++++|+.+||++.|++.... +...|.|+.++++||+||++|++
T Consensus 179 ---------------------------~~~~eD~dl~~r~~~~G~~~~~~~~~~~--~~~~~~~~~~~~~q~~rw~~g~~ 229 (236)
T cd06435 179 ---------------------------WCITEDSELGLRMHEAGYIGVYVAQSYG--HGLIPDTFEAFKKQRFRWAYGAV 229 (236)
T ss_pred ---------------------------ccccchHHHHHHHHHCCcEEEEcchhhc--cCcCcccHHHHHHHHHHHhcchh
Confidence 3568999999999999999999966444 79999999999999999999999
Q ss_pred HHHHhh
Q 003073 827 EILFSR 832 (850)
Q Consensus 827 QIllsr 832 (850)
|++.+|
T Consensus 230 ~~~~~~ 235 (236)
T cd06435 230 QILKKH 235 (236)
T ss_pred hhhhcc
Confidence 999874
No 24
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=99.95 E-value=1e-26 Score=265.11 Aligned_cols=242 Identities=21% Similarity=0.241 Sum_probs=173.9
Q ss_pred CCCcccEEEecCCCCCCCHHHHHHHHHHHH-cCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhhHhHHHhhCCCCCC
Q 003073 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSIL-AVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRA 425 (850)
Q Consensus 347 ~lP~VDVfVpt~nP~kEp~~vv~~Tvls~l-alDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~WvPFCkk~~IepRa 425 (850)
..|+|+|+||+|| |. .++.+||.+++ ++||| +++|+|+||++++.|.+.+.+.+ +
T Consensus 64 ~~p~vaIlIPA~N---E~-~vI~~~l~s~L~~ldY~--~~eIiVv~d~ndd~T~~~v~~l~----------~-------- 119 (504)
T PRK14716 64 PEKRIAIFVPAWR---EA-DVIGRMLEHNLATLDYE--NYRIFVGTYPNDPATLREVDRLA----------A-------- 119 (504)
T ss_pred CCCceEEEEeccC---ch-hHHHHHHHHHHHcCCCC--CeEEEEEECCCChhHHHHHHHHH----------H--------
Confidence 4899999999999 97 79999999864 78997 79999999999987766554421 0
Q ss_pred chhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeeccC
Q 003073 426 PEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGEN 505 (850)
Q Consensus 426 Pe~YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~rdhp~~iqV~l~~~ 505 (850)
.||+
T Consensus 120 -------------------------------------------------------------------~~p~--------- 123 (504)
T PRK14716 120 -------------------------------------------------------------------RYPR--------- 123 (504)
T ss_pred -------------------------------------------------------------------HCCC---------
Confidence 1222
Q ss_pred CCCCCCCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhc--ccCCC---CEEEEecCCCCCCcHHHHHHHHhhhcCCC
Q 003073 506 GGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSA--VLTNG---PFLLNLDCDHYINNSKALREAMCFMMDPN 580 (850)
Q Consensus 506 G~~d~~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSa--vlt~g---e~I~ilDAD~~~~~pdfLr~tv~fF~DP~ 580 (850)
+..+. ..++| ..+||+|||.+++... ....| |+|+++|||.+ ++|++|+....++.|
T Consensus 124 ------------v~~vv-~~~~g--p~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~-v~Pd~Lr~~~~~~~~-- 185 (504)
T PRK14716 124 ------------VHLVI-VPHDG--PTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDV-IHPLELRLYNYLLPR-- 185 (504)
T ss_pred ------------eEEEE-eCCCC--CCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCC-cCccHHHHHHhhcCC--
Confidence 22111 12222 3589999999987321 01234 99999999999 689999987666654
Q ss_pred CCcceEEEeccccccCCCcccc----ccchhHHHHhhhhccccCCCCcc-ccccchhhhhhhhcCCCCCCCCCCCCCCCc
Q 003073 581 LGKHVCYVQFPQRFDGIDRNDR----YANRNTVFFDINLRGLDGIQGPV-YVGTGCVFNRTALYGYEPPLKPKHRKPGLL 655 (850)
Q Consensus 581 ~G~~v~~VQtPQrF~~id~~Dr----yan~~~vFfdi~~~glDgiqgp~-yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~ 655 (850)
..+||.|....+.+.+.. |..+...++...|+.++.+++++ ..|+|++|||++|.-+
T Consensus 186 ----~~~VQ~pv~~~~~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aLe~l-------------- 247 (504)
T PRK14716 186 ----HDFVQLPVFSLPRDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSAGVGTAFSRRALERL-------------- 247 (504)
T ss_pred ----CCEEecceeccCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCeeEEeEHHHHHHH--------------
Confidence 468999977655433322 22222223444566777888776 6899999999998210
Q ss_pred ccccCCCccccCCcCccCCccccCCCCCCCCCccccchhhhhcccCCCCchhhHHHhhhhHHHHhhcchHHHHHhHhhhc
Q 003073 656 SSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMEN 735 (850)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~ 735 (850)
+.+.
T Consensus 248 ----------------------------------------------------------------------------~~~~ 251 (504)
T PRK14716 248 ----------------------------------------------------------------------------AAER 251 (504)
T ss_pred ----------------------------------------------------------------------------Hhhc
Confidence 0123
Q ss_pred CCCCCCcchhhHHHHhhhhccccccccCccccccceeecccchhHHHHHHHHHCCcEEEEeCCCC-------------Cc
Q 003073 736 GGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKR-------------PA 802 (850)
Q Consensus 736 GG~p~~~~~~~~l~eai~v~sC~YE~~T~WG~evGW~y~SITEDi~Tg~rLh~rGwRsvY~~p~~-------------aa 802 (850)
||. +|..+++|||+++|++|+.+|||++|++.+. .+
T Consensus 252 GG~-------------------------------~fd~~sLTED~dLglRL~~~G~rv~y~p~ai~~~~~~~~~~~~~v~ 300 (504)
T PRK14716 252 GGQ-------------------------------PFDSDSLTEDYDIGLRLKRAGFRQIFVRVRADDTTDRPDRRGEPIA 300 (504)
T ss_pred CCC-------------------------------CCCCCCcchHHHHHHHHHHCCCEEEEeccccccccccccccccccc
Confidence 442 2667899999999999999999999996542 12
Q ss_pred ccccCCCCHHHHHHHHHHHhhhh-HHHHHh
Q 003073 803 FKGSAPINLSDRLNQVLRWALGS-VEILFS 831 (850)
Q Consensus 803 f~G~aP~tls~~lkQR~RWA~G~-lQIlls 831 (850)
.++++|+|++++++||.||+.|. +|.+.+
T Consensus 301 t~e~~P~t~~a~~rQR~RW~~Gi~~Q~~~~ 330 (504)
T PRK14716 301 TREFFPDTFKAAVRQKARWIYGIAFQGWER 330 (504)
T ss_pred ccccCccCHHHHHHHHHHHHhchHHhhHHh
Confidence 45889999999999999999995 788753
No 25
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.94 E-value=4.5e-26 Score=268.99 Aligned_cols=242 Identities=20% Similarity=0.307 Sum_probs=172.2
Q ss_pred CCCCcccEEEecCCCCCCCHHHHHHHHHHHH-cCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhhHhHHHhhCCCCC
Q 003073 346 SQLAAVDIFVSTVDPLKEPPLVTANTVLSIL-AVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPR 424 (850)
Q Consensus 346 ~~lP~VDVfVpt~nP~kEp~~vv~~Tvls~l-alDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~WvPFCkk~~IepR 424 (850)
...|+|+|+||+|| |. .++.+|+.+++ ++|||. ++|+|++|++++.|.+.+.+. |++
T Consensus 60 ~~~~~vsIlVPa~n---E~-~vi~~~i~~ll~~ldYP~--~eI~vi~~~nD~~T~~~~~~l----------~~~------ 117 (727)
T PRK11234 60 PDEKPLAIMVPAWN---ET-GVIGNMAELAATTLDYEN--YHIFVGTYPNDPATQADVDAV----------CAR------ 117 (727)
T ss_pred CCCCCEEEEEecCc---ch-hhHHHHHHHHHHhCCCCC--eEEEEEecCCChhHHHHHHHH----------HHH------
Confidence 46799999999999 98 89999999987 799994 999999887766555544331 111
Q ss_pred CchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeecc
Q 003073 425 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 504 (850)
Q Consensus 425 aPe~YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~rdhp~~iqV~l~~ 504 (850)
||.+
T Consensus 118 ---------------------------------------------------------------------~p~~------- 121 (727)
T PRK11234 118 ---------------------------------------------------------------------FPNV------- 121 (727)
T ss_pred ---------------------------------------------------------------------CCCc-------
Confidence 1111
Q ss_pred CCCCCCCCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhccc-----CCCCEEEEecCCCCCCcHHHHHHHHhhhcCC
Q 003073 505 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVL-----TNGPFLLNLDCDHYINNSKALREAMCFMMDP 579 (850)
Q Consensus 505 ~G~~d~~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavl-----t~ge~I~ilDAD~~~~~pdfLr~tv~fF~DP 579 (850)
++|.+.| +| ..+||+|||.++....-. ...++++++|||.+ ++|++|+ .+.+|.++
T Consensus 122 ------------~~v~~~~---~g--~~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~-v~pd~L~-~~~~l~~~ 182 (727)
T PRK11234 122 ------------HKVVCAR---PG--PTSKADCLNNVLDAITQFERSANFAFAGFILHDAEDV-ISPMELR-LFNYLVER 182 (727)
T ss_pred ------------EEEEeCC---CC--CCCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCC-CChhHHH-HHHhhcCC
Confidence 1333333 33 248999999999842111 12367888999999 6999998 67888776
Q ss_pred CCCcceEEEeccccccCCCccccc----cchhHHHHhhhhccccCCCCcc-ccccchhhhhhhhcCCCCCCCCCCCCCCC
Q 003073 580 NLGKHVCYVQFPQRFDGIDRNDRY----ANRNTVFFDINLRGLDGIQGPV-YVGTGCVFNRTALYGYEPPLKPKHRKPGL 654 (850)
Q Consensus 580 ~~G~~v~~VQtPQrF~~id~~Dry----an~~~vFfdi~~~glDgiqgp~-yvGTGcvfRR~ALyG~~p~~~~~~~~~~~ 654 (850)
+ .+||.|....+...+... ..+....++..+++++.++|++ +.|||++|.|++|
T Consensus 183 ----~-~~VQ~p~~p~~~~~~~~~~~~~~~EFa~~~~~~~~~~~~lgg~~~l~G~~~af~Rr~l---------------- 241 (727)
T PRK11234 183 ----K-DLIQIPVYPFEREWTHFTSGTYIDEFAELHGKDVPVREALAGQVPSAGVGTCFSRRAV---------------- 241 (727)
T ss_pred ----C-CeEeecccCCCccHHHHHHHHHHHHHHHHhhhhhHHHHHcCCCcccCCceEEEecccH----------------
Confidence 4 899999663322222222 2333334456678888887775 5688888844443
Q ss_pred cccccCCCccccCCcCccCCccccCCCCCCCCCccccchhhhhcccCCCCchhhHHHhhhhHHHHhhcchHHHHHhHhhh
Q 003073 655 LSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLME 734 (850)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e 734 (850)
+++.+
T Consensus 242 ---------------------------------------------------------------------------~al~~ 246 (727)
T PRK11234 242 ---------------------------------------------------------------------------TALLE 246 (727)
T ss_pred ---------------------------------------------------------------------------HHHHH
Confidence 11234
Q ss_pred cC-CCCCCcchhhHHHHhhhhccccccccCccccccceeecccchhHHHHHHHHHCCcEEEEeCCCC-------------
Q 003073 735 NG-GVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKR------------- 800 (850)
Q Consensus 735 ~G-G~p~~~~~~~~l~eai~v~sC~YE~~T~WG~evGW~y~SITEDi~Tg~rLh~rGwRsvY~~p~~------------- 800 (850)
.| |+ ||..+++|||+++|++|+.+||+++|++...
T Consensus 247 ~ggg~-------------------------------~~~~~~lTED~dlg~rL~~~G~~v~f~~~~v~~~~~~~~~~~~~ 295 (727)
T PRK11234 247 DGDGI-------------------------------AFDVQSLTEDYDIGFRLKEKGMREIFVRFPVVDEAKEREQRKFL 295 (727)
T ss_pred hcCCC-------------------------------CcCCCcchHHHHHHHHHHHCCCEEEEcccccccccccccccccc
Confidence 44 43 5888999999999999999999999997211
Q ss_pred --------CcccccCCCCHHHHHHHHHHHhhh-hHHHHHh
Q 003073 801 --------PAFKGSAPINLSDRLNQVLRWALG-SVEILFS 831 (850)
Q Consensus 801 --------aaf~G~aP~tls~~lkQR~RWA~G-~lQIlls 831 (850)
.++++..|+|+++.++||.||..| .+|.+..
T Consensus 296 ~~~~~~~~~~~~~~~P~t~~~~~rQR~RW~~G~~~q~~~~ 335 (727)
T PRK11234 296 QHARTSNMICVREYFPDTFSAAVRQKSRWIIGIVFQGFKT 335 (727)
T ss_pred cccccccceEEEEeCchhHHHHHHHHHHHHcccHHHHHHH
Confidence 346788999999999999999999 6888644
No 26
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=99.93 E-value=1.5e-26 Score=230.64 Aligned_cols=224 Identities=30% Similarity=0.435 Sum_probs=136.4
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhhHhHHHhhCCCCCCchh
Q 003073 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 428 (850)
Q Consensus 349 P~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~WvPFCkk~~IepRaPe~ 428 (850)
|+|+|+||+|| |+ ..+.+||.|+++++|| +++|+|+||++.+.|.+.+.+
T Consensus 1 P~v~Vvip~~~---~~-~~l~~~l~sl~~~~~~--~~~v~vvd~~~~~~~~~~~~~------------------------ 50 (228)
T PF13641_consen 1 PRVSVVIPAYN---ED-DVLRRCLESLLAQDYP--RLEVVVVDDGSDDETAEILRA------------------------ 50 (228)
T ss_dssp --EEEE--BSS----H-HHHHHHHHHHTTSHHH--TEEEEEEEE-SSS-GCTTHHH------------------------
T ss_pred CEEEEEEEecC---CH-HHHHHHHHHHHcCCCC--CeEEEEEECCCChHHHHHHHH------------------------
Confidence 78999999999 76 5999999999999996 699999999988743322211
Q ss_pred hhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeeccCCCC
Q 003073 429 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 508 (850)
Q Consensus 429 YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~rdhp~~iqV~l~~~G~~ 508 (850)
+.+ + +|+
T Consensus 51 -------------------------------------~~~---~---------------------~~~------------ 57 (228)
T PF13641_consen 51 -------------------------------------LAA---R---------------------YPR------------ 57 (228)
T ss_dssp -------------------------------------HHH---T---------------------TGG------------
T ss_pred -------------------------------------HHH---H---------------------cCC------------
Confidence 110 0 000
Q ss_pred CCCCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhcCCCCCcceEEE
Q 003073 509 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYV 588 (850)
Q Consensus 509 d~~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~DP~~G~~v~~V 588 (850)
-++.++.+.+.+| ..+|++|+|.+++ ...+++|+++|+|.++ .|++|++++.+|.+| ++++|
T Consensus 58 -------~~v~vi~~~~~~g--~~~k~~a~n~~~~----~~~~d~i~~lD~D~~~-~p~~l~~~~~~~~~~----~~~~v 119 (228)
T PF13641_consen 58 -------VRVRVIRRPRNPG--PGGKARALNEALA----AARGDYILFLDDDTVL-DPDWLERLLAAFADP----GVGAV 119 (228)
T ss_dssp --------GEEEEE----HH--HHHHHHHHHHHHH----H---SEEEEE-SSEEE--CHHHHHHHHHHHBS----S--EE
T ss_pred -------CceEEeecCCCCC--cchHHHHHHHHHH----hcCCCEEEEECCCcEE-CHHHHHHHHHHHHhC----CCCeE
Confidence 0156666654221 2379999999999 4679999999999994 899999999999888 89999
Q ss_pred eccccccCCCccccccchhHHHHhh----hhccccCCCCccccccchhhhhhhhcCCCCCCCCCCCCCCCcccccCCCcc
Q 003073 589 QFPQRFDGIDRNDRYANRNTVFFDI----NLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRK 664 (850)
Q Consensus 589 QtPQrF~~id~~Dryan~~~vFfdi----~~~glDgiqgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~~ 664 (850)
|++..+++ +.+ .+......+|.. ...+...++.+.+.|++++|||++|
T Consensus 120 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~~-------------------------- 171 (228)
T PF13641_consen 120 GGPVFPDN-DRN-WLTRLQDLFFARWHLRFRSGRRALGVAFLSGSGMLFRRSAL-------------------------- 171 (228)
T ss_dssp EEEEEETT-CCC-EEEE-TT--S-EETTTS-TT-B----S-B--TEEEEEHHHH--------------------------
T ss_pred eeeEeecC-CCC-HHHHHHHHHHhhhhhhhhhhhcccceeeccCcEEEEEHHHH--------------------------
Confidence 99887664 322 222222222211 1223333444445666666666666
Q ss_pred ccCCcCccCCccccCCCCCCCCCccccchhhhhcccCCCCchhhHHHhhhhHHHHhhcchHHHHHhHhhhcCCCCCCcch
Q 003073 665 KNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATH 744 (850)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~ 744 (850)
.++||++
T Consensus 172 --------------------------------------------------------------------~~~g~fd----- 178 (228)
T PF13641_consen 172 --------------------------------------------------------------------EEVGGFD----- 178 (228)
T ss_dssp --------------------------------------------------------------------HHH-S-------
T ss_pred --------------------------------------------------------------------HHhCCCC-----
Confidence 4567654
Q ss_pred hhHHHHhhhhccccccccCccccccceeecccchhHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHHhhh
Q 003073 745 ETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALG 824 (850)
Q Consensus 745 ~~~l~eai~v~sC~YE~~T~WG~evGW~y~SITEDi~Tg~rLh~rGwRsvY~~p~~aaf~G~aP~tls~~lkQR~RWA~G 824 (850)
...+.||++++++|.++||+++|++... ++...|.|++++++||.||+.|
T Consensus 179 ----------------------------~~~~~eD~~l~~r~~~~G~~~~~~~~~~--v~~~~~~~~~~~~~q~~RW~~g 228 (228)
T PF13641_consen 179 ----------------------------PFILGEDFDLCLRLRAAGWRIVYAPDAL--VYHEEPSSLKAFFKQRFRWSRG 228 (228)
T ss_dssp ----------------------------SSSSSHHHHHHHHHHHTT--EEEEEEEE--EEE--SSSTHHHHHHHHHHH--
T ss_pred ----------------------------CCCcccHHHHHHHHHHCCCcEEEECCcE--EEEeCCCCHHHHHHHHhccCcC
Confidence 2577799999999999999999996543 3899999999999999999987
No 27
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.91 E-value=1.1e-24 Score=224.16 Aligned_cols=53 Identities=17% Similarity=0.198 Sum_probs=47.2
Q ss_pred ecccchhHHHHHHHHHCCcEEEE--eCCCCCcccccCCCCHHHHHHHHHHHhhhhHH
Q 003073 773 YGSVTEDILTGFKMHARGWRSIY--CMPKRPAFKGSAPINLSDRLNQVLRWALGSVE 827 (850)
Q Consensus 773 y~SITEDi~Tg~rLh~rGwRsvY--~~p~~aaf~G~aP~tls~~lkQR~RWA~G~lQ 827 (850)
..+++||++++++|..+||++.| ++.+.+ +.++|+|++++++||+||++|++.
T Consensus 189 ~~~~~ED~~l~~~l~~~G~~~~~~~~~~a~~--~~~~p~s~~~~~~QR~RW~~g~~~ 243 (244)
T cd04190 189 NLDLGEDRILCTLLLKAGPKRKYLYVPGAVA--ETDVPETFVELLSQRRRWINSTIA 243 (244)
T ss_pred HHhHhcccceeHHHhccCCccEEEEecccEE--EEECCCCHHHHHHHhHhhhccccc
Confidence 35899999999999999999999 755444 899999999999999999999863
No 28
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.90 E-value=6.4e-23 Score=202.44 Aligned_cols=226 Identities=17% Similarity=0.189 Sum_probs=154.7
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhhHhHHHhhCCCCCCchhhhhh
Q 003073 353 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQ 432 (850)
Q Consensus 353 VfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~WvPFCkk~~IepRaPe~YF~~ 432 (850)
|+||||| |+ ..+.+||.|++.++||.++++|+|+|||+++.|.+.+.... +
T Consensus 1 viip~~n---~~-~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~-----------~-------------- 51 (229)
T cd04192 1 VVIAARN---EA-ENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAA-----------A-------------- 51 (229)
T ss_pred CEEEecC---cH-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHH-----------h--------------
Confidence 6899999 76 78999999999999998889999999999886555332000 0
Q ss_pred hcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeeccCCCCCCCC
Q 003073 433 KIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEG 512 (850)
Q Consensus 433 k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~rdhp~~iqV~l~~~G~~d~~~ 512 (850)
+
T Consensus 52 -------------------------------------------------------------~------------------ 52 (229)
T cd04192 52 -------------------------------------------------------------K------------------ 52 (229)
T ss_pred -------------------------------------------------------------C------------------
Confidence 0
Q ss_pred CCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhcCCCCCcceEEEeccc
Q 003073 513 NELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQ 592 (850)
Q Consensus 513 ~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~DP~~G~~v~~VQtPQ 592 (850)
..|++.++.++. + ...+|+.++|.++. .++++||+++|+|.+ ..|++|.+++.+|.++ ..++|+.+.
T Consensus 53 -~~~~v~~~~~~~--~-~~~g~~~a~n~g~~----~~~~d~i~~~D~D~~-~~~~~l~~l~~~~~~~----~~~~v~~~~ 119 (229)
T cd04192 53 -PNFQLKILNNSR--V-SISGKKNALTTAIK----AAKGDWIVTTDADCV-VPSNWLLTFVAFIQKE----QIGLVAGPV 119 (229)
T ss_pred -CCcceEEeeccC--c-ccchhHHHHHHHHH----HhcCCEEEEECCCcc-cCHHHHHHHHHHhhcC----CCcEEeeee
Confidence 012355554442 1 23589999999998 578999999999999 5899999999988665 578888888
Q ss_pred cccCCCcc-ccccchhHHHHhhhhccccCCCCcc-ccccchhhhhhhhcCCCCCCCCCCCCCCCcccccCCCccccCCcC
Q 003073 593 RFDGIDRN-DRYANRNTVFFDINLRGLDGIQGPV-YVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSS 670 (850)
Q Consensus 593 rF~~id~~-Dryan~~~vFfdi~~~glDgiqgp~-yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (850)
.+...+.. ..+......++.....+..+++.+. ..|
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------------------------------------------ 157 (229)
T cd04192 120 IYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNG------------------------------------------ 157 (229)
T ss_pred eecCCccHHHHHHHHHHHHHHHHHhhHHHhcCcccccc------------------------------------------
Confidence 87622111 1111111111111111111111111 122
Q ss_pred ccCCccccCCCCCCCCCccccchhhhhcccCCCCchhhHHHhhhhHHHHhhcchHHHHHhHhhhcCCCCCCcchhhHHHH
Q 003073 671 KKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKE 750 (850)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~l~e 750 (850)
++..|+++++.++||++.
T Consensus 158 ----------------------------------------------------~~~~~rr~~~~~~ggf~~---------- 175 (229)
T cd04192 158 ----------------------------------------------------ANMAYRKEAFFEVGGFEG---------- 175 (229)
T ss_pred ----------------------------------------------------ceEEEEHHHHHHhcCCcc----------
Confidence 233445555567888763
Q ss_pred hhhhccccccccCccccccceeecccchhHHHHHHHHHCCc-EEEEeCCCCCcccccCCCCHHHHHHHHHHHhhh
Q 003073 751 AIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGW-RSIYCMPKRPAFKGSAPINLSDRLNQVLRWALG 824 (850)
Q Consensus 751 ai~v~sC~YE~~T~WG~evGW~y~SITEDi~Tg~rLh~rGw-RsvY~~p~~aaf~G~aP~tls~~lkQR~RWA~G 824 (850)
.....+||.++.++++++|| ++.|+.......+...|.+++++++||+||++|
T Consensus 176 ---------------------~~~~~~eD~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~Rw~~g 229 (229)
T cd04192 176 ---------------------NDHIASGDDELLLAKVASKYPKVAYLKNPEALVTTQPVTSWKELLNQRKRWASK 229 (229)
T ss_pred ---------------------ccccccCCHHHHHHHHHhCCCCEEEeeCcchheecCCchhHHHHHHHHHHhhcC
Confidence 12467899999999999999 998885544445899999999999999999987
No 29
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.90 E-value=1.3e-22 Score=222.22 Aligned_cols=236 Identities=18% Similarity=0.213 Sum_probs=160.2
Q ss_pred CCCCcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhhHhHHHhhCCCCCC
Q 003073 346 SQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRA 425 (850)
Q Consensus 346 ~~lP~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~WvPFCkk~~IepRa 425 (850)
...|+|+|+||+|| |++ .+.++|.|++++|||. ++|+|+||++++.|.+.+.+.
T Consensus 38 ~~~p~VSViiP~~n---ee~-~l~~~L~Sl~~q~Yp~--~EIivvdd~s~D~t~~iv~~~-------------------- 91 (373)
T TIGR03472 38 RAWPPVSVLKPLHG---DEP-ELYENLASFCRQDYPG--FQMLFGVQDPDDPALAVVRRL-------------------- 91 (373)
T ss_pred CCCCCeEEEEECCC---CCh-hHHHHHHHHHhcCCCC--eEEEEEeCCCCCcHHHHHHHH--------------------
Confidence 34899999999999 884 6789999999999994 999999999988655433221
Q ss_pred chhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeeccC
Q 003073 426 PEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGEN 505 (850)
Q Consensus 426 Pe~YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~rdhp~~iqV~l~~~ 505 (850)
.+ .||.
T Consensus 92 -----------------------------------------~~------------------------~~p~--------- 97 (373)
T TIGR03472 92 -----------------------------------------RA------------------------DFPD--------- 97 (373)
T ss_pred -----------------------------------------HH------------------------hCCC---------
Confidence 00 0111
Q ss_pred CCCCCCCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhcCCCCCcce
Q 003073 506 GGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHV 585 (850)
Q Consensus 506 G~~d~~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~DP~~G~~v 585 (850)
.++.++....+.| .++|++|+|.+++ .+++|+|+++|||.+ +.|++|++++..|.|| ++
T Consensus 98 ----------~~i~~v~~~~~~G--~~~K~~~l~~~~~----~a~ge~i~~~DaD~~-~~p~~L~~lv~~~~~~----~v 156 (373)
T TIGR03472 98 ----------ADIDLVIDARRHG--PNRKVSNLINMLP----HARHDILVIADSDIS-VGPDYLRQVVAPLADP----DV 156 (373)
T ss_pred ----------CceEEEECCCCCC--CChHHHHHHHHHH----hccCCEEEEECCCCC-cChhHHHHHHHHhcCC----Cc
Confidence 1255554443333 4579999999887 579999999999999 5899999999999988 79
Q ss_pred EEEeccccccCCCccccccchhH-HHHhhhhccccCCCCccccccchhhhhhhhcCCCCCCCCCCCCCCCcccccCCCcc
Q 003073 586 CYVQFPQRFDGIDRNDRYANRNT-VFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRK 664 (850)
Q Consensus 586 ~~VQtPQrF~~id~~Dryan~~~-vFfdi~~~glDgiqgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~~ 664 (850)
++|+++.+.. +... +.++.. .+... .++-+. .+. ..+ |. +
T Consensus 157 ~~V~~~~~~~--~~~~-~~~~l~~~~~~~----------~~~~~~-~~~--~~~-~~--~-------------------- 197 (373)
T TIGR03472 157 GLVTCLYRGR--PVPG-FWSRLGAMGINH----------NFLPSV-MVA--RAL-GR--A-------------------- 197 (373)
T ss_pred ceEeccccCC--CCCC-HHHHHHHHHhhh----------hhhHHH-HHH--Hhc-cC--C--------------------
Confidence 9999864422 1111 111110 11000 000000 000 000 00 0
Q ss_pred ccCCcCccCCccccCCCCCCCCCccccchhhhhcccCCCCchhhHHHhhhhHHHHhhcchHHHHHhHhhhcCCCCCCcch
Q 003073 665 KNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATH 744 (850)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~ 744 (850)
..-.|++-.|++++++++||++.
T Consensus 198 -----------------------------------------------------~~~~G~~~a~RR~~l~~iGGf~~---- 220 (373)
T TIGR03472 198 -----------------------------------------------------RFCFGATMALRRATLEAIGGLAA---- 220 (373)
T ss_pred -----------------------------------------------------ccccChhhheeHHHHHHcCChHH----
Confidence 00136666777888888998753
Q ss_pred hhHHHHhhhhccccccccCccccccceeecccchhHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHHhhh
Q 003073 745 ETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALG 824 (850)
Q Consensus 745 ~~~l~eai~v~sC~YE~~T~WG~evGW~y~SITEDi~Tg~rLh~rGwRsvY~~p~~aaf~G~aP~tls~~lkQR~RWA~G 824 (850)
...+++||++++.++.++||++.|.+.... ....|+|++++++||.||++.
T Consensus 221 ---------------------------~~~~~~ED~~l~~~i~~~G~~v~~~~~~v~--~~~~~~s~~~~~~q~~RW~r~ 271 (373)
T TIGR03472 221 ---------------------------LAHHLADDYWLGELVRALGLRVVLAPVVVD--TDVHETSFATLLAHELRWSRT 271 (373)
T ss_pred ---------------------------hcccchHHHHHHHHHHHcCCeEEecchhhh--cCCCccCHHHHHHHHHHHHhh
Confidence 024678999999999999999999855333 677789999999999999876
Q ss_pred hHH
Q 003073 825 SVE 827 (850)
Q Consensus 825 ~lQ 827 (850)
...
T Consensus 272 ~~~ 274 (373)
T TIGR03472 272 IRA 274 (373)
T ss_pred hhc
Confidence 553
No 30
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.90 E-value=9e-23 Score=201.74 Aligned_cols=194 Identities=18% Similarity=0.202 Sum_probs=148.1
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhhHhHHHhhCCCCCCchh
Q 003073 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 428 (850)
Q Consensus 349 P~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~WvPFCkk~~IepRaPe~ 428 (850)
|.|+|+||+|| |.. .+.++|.|+++++||. ++|+|+|||+++.|.+.+.+.. ++
T Consensus 1 p~vsviip~~n---~~~-~l~~~L~sl~~q~~~~--~eiivVdd~s~d~t~~~~~~~~----------~~---------- 54 (196)
T cd02520 1 PGVSILKPLCG---VDP-NLYENLESFFQQDYPK--YEILFCVQDEDDPAIPVVRKLI----------AK---------- 54 (196)
T ss_pred CCeEEEEecCC---CCc-cHHHHHHHHHhccCCC--eEEEEEeCCCcchHHHHHHHHH----------HH----------
Confidence 67999999999 774 5789999999999994 9999999999986655443210 00
Q ss_pred hhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeeccCCCC
Q 003073 429 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 508 (850)
Q Consensus 429 YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~rdhp~~iqV~l~~~G~~ 508 (850)
||.+
T Consensus 55 -----------------------------------------------------------------~~~~----------- 58 (196)
T cd02520 55 -----------------------------------------------------------------YPNV----------- 58 (196)
T ss_pred -----------------------------------------------------------------CCCC-----------
Confidence 0000
Q ss_pred CCCCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhcCCCCCcceEEE
Q 003073 509 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYV 588 (850)
Q Consensus 509 d~~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~DP~~G~~v~~V 588 (850)
++.|+...+..| ..+|++|||++++ .++++||+++|+|.. ..|++|.+++..|.+| .+++|
T Consensus 59 --------~~~~~~~~~~~g--~~~~~~~~n~g~~----~a~~d~i~~~D~D~~-~~~~~l~~l~~~~~~~----~~~~v 119 (196)
T cd02520 59 --------DARLLIGGEKVG--INPKVNNLIKGYE----EARYDILVISDSDIS-VPPDYLRRMVAPLMDP----GVGLV 119 (196)
T ss_pred --------cEEEEecCCcCC--CCHhHHHHHHHHH----hCCCCEEEEECCCce-EChhHHHHHHHHhhCC----CCCeE
Confidence 133444333222 2368999999998 578999999999999 5799999999998887 67888
Q ss_pred eccccccCCCccccccchhHHHHhhhhccccCCCCccccccchhhhhhhhcCCCCCCCCCCCCCCCcccccCCCccccCC
Q 003073 589 QFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSK 668 (850)
Q Consensus 589 QtPQrF~~id~~Dryan~~~vFfdi~~~glDgiqgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (850)
++. ...|++++|||+++
T Consensus 120 ~~~---------------------------------~~~g~~~~~r~~~~------------------------------ 136 (196)
T cd02520 120 TCL---------------------------------CAFGKSMALRREVL------------------------------ 136 (196)
T ss_pred Eee---------------------------------cccCceeeeEHHHH------------------------------
Confidence 764 45577788887777
Q ss_pred cCccCCccccCCCCCCCCCccccchhhhhcccCCCCchhhHHHhhhhHHHHhhcchHHHHHhHhhhcCCCCCCcchhhHH
Q 003073 669 SSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLL 748 (850)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~l 748 (850)
.++||++.
T Consensus 137 ----------------------------------------------------------------~~~ggf~~-------- 144 (196)
T cd02520 137 ----------------------------------------------------------------DAIGGFEA-------- 144 (196)
T ss_pred ----------------------------------------------------------------HhccChHH--------
Confidence 23566531
Q ss_pred HHhhhhccccccccCccccccceeecccchhHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHHhh
Q 003073 749 KEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWAL 823 (850)
Q Consensus 749 ~eai~v~sC~YE~~T~WG~evGW~y~SITEDi~Tg~rLh~rGwRsvY~~p~~aaf~G~aP~tls~~lkQR~RWA~ 823 (850)
....+.||++++++|..+||++.|+.... ++...|.+++++++||.||++
T Consensus 145 -----------------------~~~~~~eD~~l~~rl~~~G~~i~~~~~~~--~~~~~~~~~~~~~~q~~rw~~ 194 (196)
T cd02520 145 -----------------------FADYLAEDYFLGKLIWRLGYRVVLSPYVV--MQPLGSTSLASFWRRQLRWSR 194 (196)
T ss_pred -----------------------HhHHHHHHHHHHHHHHHcCCeEEEcchhe--eccCCcccHHHHHHHHHHHhc
Confidence 01356899999999999999999996643 379999999999999999986
No 31
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.89 E-value=4.3e-22 Score=233.84 Aligned_cols=173 Identities=20% Similarity=0.262 Sum_probs=127.3
Q ss_pred cCchhhhhHHHHHhh---cccCCCCE--EEEecCCCCCCcHHHHHHHHhhhcCCCCCcceEEEecccc-ccCCCcc---c
Q 003073 531 HHKKAGAMNALVRVS---AVLTNGPF--LLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQR-FDGIDRN---D 601 (850)
Q Consensus 531 hh~KAGnLNalLrvS---avlt~ge~--I~ilDAD~~~~~pdfLr~tv~fF~DP~~G~~v~~VQtPQr-F~~id~~---D 601 (850)
..+||.|||.++... .-...++| |+++|||.+ ++|++|+.. -||.+. . -+||.|-. ..+...+ .
T Consensus 139 p~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~-~~P~~L~~~-~~~~~~----~-~~iQ~pV~~~~~~~~~~l~~ 211 (703)
T PRK15489 139 PTCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDV-LHPLELKYF-NYLLPR----K-DLVQLPVLSLERKWYEWVAG 211 (703)
T ss_pred CCCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCC-CChhHHHHH-HhhcCC----c-ceeeeeeccCCCccccHHHH
Confidence 358999999988732 11124445 999999999 799999765 555433 1 36998721 2221111 2
Q ss_pred cccchhHHHHhhhhccccCCCCccc-cccchhhhhhhhcCCCCCCCCCCCCCCCcccccCCCccccCCcCccCCccccCC
Q 003073 602 RYANRNTVFFDINLRGLDGIQGPVY-VGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSS 680 (850)
Q Consensus 602 ryan~~~vFfdi~~~glDgiqgp~y-vGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (850)
-|+.+....|+..|+++..+.|++. -|||++|||.||--
T Consensus 212 ~~~~Efa~~~~~~l~~r~~l~~~ipl~Gv~~~frr~aL~~---------------------------------------- 251 (703)
T PRK15489 212 TYMDEFAEWHQKDLVVRESLTGTVPSAGVGTCFSRRALLA---------------------------------------- 251 (703)
T ss_pred HHHHHHHHHhhhHHHHHHHcCCceeccCcceeeeHHHHHH----------------------------------------
Confidence 3677777888889999999999886 56899999999821
Q ss_pred CCCCCCCccccchhhhhcccCCCCchhhHHHhhhhHHHHhhcchHHHHHhHhhhcCCCCCCcchhhHHHHhhhhcccccc
Q 003073 681 KHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYE 760 (850)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~l~eai~v~sC~YE 760 (850)
+.+.||..
T Consensus 252 ---------------------------------------------------l~~~gg~~--------------------- 259 (703)
T PRK15489 252 ---------------------------------------------------LMKERGNQ--------------------- 259 (703)
T ss_pred ---------------------------------------------------HHHhcCCC---------------------
Confidence 12334422
Q ss_pred ccCccccccceeecccchhHHHHHHHHHCCcEEEEeCC---------------------CCCcccccCCCCHHHHHHHHH
Q 003073 761 DKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMP---------------------KRPAFKGSAPINLSDRLNQVL 819 (850)
Q Consensus 761 ~~T~WG~evGW~y~SITEDi~Tg~rLh~rGwRsvY~~p---------------------~~aaf~G~aP~tls~~lkQR~ 819 (850)
+|..+++|||+++|+||+.+|||+.|+.- ...+.++..|.|+.+.++||.
T Consensus 260 ---------~~n~~sLTED~Dlg~RL~~~G~r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~tre~fP~~~~a~~rQk~ 330 (703)
T PRK15489 260 ---------PFNTSSLTEDYDFSFRLAELGMQEIFVRFPVQFRVRRTSWFGPRRERTREMLLCVREYFPDTFRTAYRQKA 330 (703)
T ss_pred ---------CCCCCCchHhHHHHHHHHHCCCceEEEEEeccccccccccccccccccccCceeehhhCcHHHHHHHHHHH
Confidence 48889999999999999999999999321 134568899999999999999
Q ss_pred HHhhhhH-HHHHh
Q 003073 820 RWALGSV-EILFS 831 (850)
Q Consensus 820 RWA~G~l-QIlls 831 (850)
||..|-. |.+.+
T Consensus 331 RW~~Gi~~q~~~~ 343 (703)
T PRK15489 331 RWVLGIAFQGWEQ 343 (703)
T ss_pred HHHhHHHHhhHHH
Confidence 9999987 77543
No 32
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.86 E-value=6.4e-21 Score=190.63 Aligned_cols=167 Identities=20% Similarity=0.238 Sum_probs=112.2
Q ss_pred cCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhcCCCCCcceEEEeccccccCCCccccccchhHHH
Q 003073 531 HHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVF 610 (850)
Q Consensus 531 hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~DP~~G~~v~~VQtPQrF~~id~~Dryan~~~vF 610 (850)
+.+|++|+|.+++ .++++||+++|+|.+ +.|++|++++.+|.+| +++.|++.+.+.+.+.+ .+......+
T Consensus 62 ~~g~~~a~n~g~~----~a~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~----~v~~v~~~~~~~~~~~~-~~~~~~~~~ 131 (235)
T cd06434 62 HPGKRRALAEGIR----HVTTDIVVLLDSDTV-WPPNALPEMLKPFEDP----KVGGVGTNQRILRPRDS-KWSFLAAEY 131 (235)
T ss_pred CCChHHHHHHHHH----HhCCCEEEEECCCce-eChhHHHHHHHhccCC----CEeEEcCceEeecCccc-HHHHHHHHH
Confidence 3579999999998 468999999999999 6899999999999887 89999999888766422 111111111
Q ss_pred Hhhh----hccccCCCC-ccccccchhhhhhhhcCCCCCCCCCCCCCCCcccccCCCccccCCcCccCCccccCCCCCCC
Q 003073 611 FDIN----LRGLDGIQG-PVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDP 685 (850)
Q Consensus 611 fdi~----~~glDgiqg-p~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (850)
+... .+.....++ ....|...+|||++|....
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~~------------------------------------------- 168 (235)
T cd06434 132 LERRNEEIRAAMSYDGGVPCLSGRTAAYRTEILKDFL------------------------------------------- 168 (235)
T ss_pred HHHHHHHHHHHHhhCCCEEEccCcHHHHHHHHHhhhh-------------------------------------------
Confidence 1111 111111121 1223445567777763110
Q ss_pred CCccccchhhhhcccCCCCchhhHHHhhhhHHHHhhcchHHHHHhHhhhcCCCCCCcchhhHHHHhhhhccccccccCcc
Q 003073 686 TVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEW 765 (850)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~l~eai~v~sC~YE~~T~W 765 (850)
++++ + . -.-.+|.+
T Consensus 169 ------------------~~~~---------~----------~---~~~~~~~~-------------------------- 182 (235)
T cd06434 169 ------------------FLEE---------F----------T---NETFMGRR-------------------------- 182 (235)
T ss_pred ------------------hHHH---------h----------h---hhhhcCCC--------------------------
Confidence 0000 0 0 00122322
Q ss_pred ccccceeecccchhHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHHhhhhH
Q 003073 766 GSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSV 826 (850)
Q Consensus 766 G~evGW~y~SITEDi~Tg~rLh~rGwRsvY~~p~~aaf~G~aP~tls~~lkQR~RWA~G~l 826 (850)
....||.+++.+++.+||+++|+....+ +...|.++.++++||+||++|..
T Consensus 183 --------~~~~eD~~l~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~q~~Rw~~~~~ 233 (235)
T cd06434 183 --------LNAGDDRFLTRYVLSHGYKTVYQYTSEA--YTETPENYKKFLKQQLRWSRSNW 233 (235)
T ss_pred --------CCcCchHHHHHHHHHCCCeEEEecCCeE--EEEcchhHHHHHHHhhhhhhccc
Confidence 3678999999999999999999976544 67899999999999999999974
No 33
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.85 E-value=3.6e-20 Score=187.81 Aligned_cols=127 Identities=26% Similarity=0.356 Sum_probs=99.3
Q ss_pred CCCCCcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhhHhHHHhhCCCCC
Q 003073 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPR 424 (850)
Q Consensus 345 ~~~lP~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~WvPFCkk~~IepR 424 (850)
....|.|+|+||+|| |+ ..+.++|.++++++||.++++|+|+|||+++.|.+.+.+
T Consensus 25 ~~~~~~isVvip~~n---~~-~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~-------------------- 80 (251)
T cd06439 25 PAYLPTVTIIIPAYN---EE-AVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIARE-------------------- 80 (251)
T ss_pred CCCCCEEEEEEecCC---cH-HHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHH--------------------
Confidence 456899999999999 76 788999999999999988899999999999855443321
Q ss_pred CchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeecc
Q 003073 425 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 504 (850)
Q Consensus 425 aPe~YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~rdhp~~iqV~l~~ 504 (850)
+.+
T Consensus 81 -------------------------------~~~---------------------------------------------- 83 (251)
T cd06439 81 -------------------------------YAD---------------------------------------------- 83 (251)
T ss_pred -------------------------------Hhh----------------------------------------------
Confidence 000
Q ss_pred CCCCCCCCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhcCCCCCcc
Q 003073 505 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKH 584 (850)
Q Consensus 505 ~G~~d~~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~DP~~G~~ 584 (850)
. ++.++..++ ..+|++|+|.+++ .+.+++|+++|+|.++ .|++|++++..|.++ +
T Consensus 84 ---------~--~v~~i~~~~-----~~g~~~a~n~gi~----~a~~d~i~~lD~D~~~-~~~~l~~l~~~~~~~----~ 138 (251)
T cd06439 84 ---------K--GVKLLRFPE-----RRGKAAALNRALA----LATGEIVVFTDANALL-DPDALRLLVRHFADP----S 138 (251)
T ss_pred ---------C--cEEEEEcCC-----CCChHHHHHHHHH----HcCCCEEEEEccccCc-CHHHHHHHHHHhcCC----C
Confidence 0 133443333 2469999999998 4778999999999995 699999999999877 6
Q ss_pred eEEEeccccccCC
Q 003073 585 VCYVQFPQRFDGI 597 (850)
Q Consensus 585 v~~VQtPQrF~~i 597 (850)
+++|++...+.+.
T Consensus 139 ~~~v~~~~~~~~~ 151 (251)
T cd06439 139 VGAVSGELVIVDG 151 (251)
T ss_pred ccEEEeEEEecCC
Confidence 8888887666443
No 34
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=99.81 E-value=1.1e-18 Score=174.37 Aligned_cols=55 Identities=15% Similarity=0.121 Sum_probs=49.1
Q ss_pred cchhHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHHhhhhHHHHHhh
Q 003073 776 VTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSR 832 (850)
Q Consensus 776 ITEDi~Tg~rLh~rGwRsvY~~p~~aaf~G~aP~tls~~lkQR~RWA~G~lQIllsr 832 (850)
..||.+++++++++|+++.|++.... ....+.+++.+++|+.||+.|.+|.+..+
T Consensus 180 ~~eD~~l~~r~~~~G~~~~~~~~~~~--~~~~~~s~~~~~~~~~r~~~~~~~~~~~~ 234 (249)
T cd02525 180 RNEDAELNYRLRKAGYKIWLSPDIRV--YYYPRSTLKKLARQYFRYGKWRARTLRKH 234 (249)
T ss_pred ccchhHHHHHHHHcCcEEEEcCCeEE--EEcCCCCHHHHHHHHHHHhhhhHHHHHhC
Confidence 46999999999999999999966444 67789999999999999999999999874
No 35
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.77 E-value=1.9e-17 Score=182.49 Aligned_cols=135 Identities=23% Similarity=0.221 Sum_probs=95.9
Q ss_pred CCCCCcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhhHhHHHhhCCCCC
Q 003073 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPR 424 (850)
Q Consensus 345 ~~~lP~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~WvPFCkk~~IepR 424 (850)
+...|+|+|+||+|| |. ..+.+++.|+++++||. .++|+|+|||+++.|.+.+.+.. ++
T Consensus 36 ~~~~p~VSVIIpa~N---e~-~~L~~~L~sL~~q~yp~-~~eIIVVDd~StD~T~~i~~~~~----------~~------ 94 (384)
T TIGR03469 36 PEAWPAVVAVVPARN---EA-DVIGECVTSLLEQDYPG-KLHVILVDDHSTDGTADIARAAA----------RA------ 94 (384)
T ss_pred CCCCCCEEEEEecCC---cH-hHHHHHHHHHHhCCCCC-ceEEEEEeCCCCCcHHHHHHHHH----------Hh------
Confidence 457899999999999 87 78899999999999995 59999999999997665443310 00
Q ss_pred CchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeecc
Q 003073 425 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 504 (850)
Q Consensus 425 aPe~YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~rdhp~~iqV~l~~ 504 (850)
.|. +
T Consensus 95 ------------------------------------------------~~~------------------~---------- 98 (384)
T TIGR03469 95 ------------------------------------------------YGR------------------G---------- 98 (384)
T ss_pred ------------------------------------------------cCC------------------C----------
Confidence 000 0
Q ss_pred CCCCCCCCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhccc-CCCCEEEEecCCCCCCcHHHHHHHHhhhcCCCCCc
Q 003073 505 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVL-TNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGK 583 (850)
Q Consensus 505 ~G~~d~~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavl-t~ge~I~ilDAD~~~~~pdfLr~tv~fF~DP~~G~ 583 (850)
+++.++..+..|. .-.+|+.|+|.+++.+... .++|+|+++|||.+ .+|++|++++.++.++
T Consensus 99 -----------~~i~vi~~~~~~~-g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~-~~p~~l~~lv~~~~~~---- 161 (384)
T TIGR03469 99 -----------DRLTVVSGQPLPP-GWSGKLWAVSQGIAAARTLAPPADYLLLTDADIA-HGPDNLARLVARARAE---- 161 (384)
T ss_pred -----------CcEEEecCCCCCC-CCcchHHHHHHHHHHHhccCCCCCEEEEECCCCC-CChhHHHHHHHHHHhC----
Confidence 1244444332221 2458999999999843211 12899999999999 6899999999998765
Q ss_pred ceEEEecccc
Q 003073 584 HVCYVQFPQR 593 (850)
Q Consensus 584 ~v~~VQtPQr 593 (850)
++++|...-+
T Consensus 162 ~~~~vs~~~~ 171 (384)
T TIGR03469 162 GLDLVSLMVR 171 (384)
T ss_pred CCCEEEeccc
Confidence 4556654433
No 36
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.72 E-value=4.8e-17 Score=161.21 Aligned_cols=114 Identities=17% Similarity=0.075 Sum_probs=80.5
Q ss_pred EEEEeccCCCCCCcCchhhhhHHHHHhhc-------ccCCCCEEEEecCCCCCCcHHHHHHHHhhhcCCCCCcceEEEec
Q 003073 518 LVYVSREKRPGFQHHKKAGAMNALVRVSA-------VLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQF 590 (850)
Q Consensus 518 lvYvsReKRPg~~hh~KAGnLNalLrvSa-------vlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~DP~~G~~v~~VQt 590 (850)
+.++.++... ...+|+++||++++.+. .-..+++|+++|||.+ ..|++|++++.+|.+| +++.||.
T Consensus 52 v~~i~~~~~~--~~~Gk~~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~-~~~~~l~~~~~~~~~~----~v~~v~~ 124 (191)
T cd06436 52 VHLLRRHLPN--ARTGKGDALNAAYDQIRQILIEEGADPERVIIAVIDADGR-LDPNALEAVAPYFSDP----RVAGTQS 124 (191)
T ss_pred EEEEeccCCc--CCCCHHHHHHHHHHHHhhhccccccCCCccEEEEECCCCC-cCHhHHHHHHHhhcCC----ceEEEee
Confidence 5666554211 23479999999998431 0113589999999999 6899999999999998 7999999
Q ss_pred cccccCCCccc--c-ccchhHHHHhhhhccccCCCCccccccchhhhhhhh
Q 003073 591 PQRFDGIDRND--R-YANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTAL 638 (850)
Q Consensus 591 PQrF~~id~~D--r-yan~~~vFfdi~~~glDgiqgp~yvGTGcvfRR~AL 638 (850)
+.++.+.+.+- + +..+...++.+++.++..++...+.|+|++|||+||
T Consensus 125 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~~r~~~l 175 (191)
T cd06436 125 RVRMYNRHKNLLTILQDLEFFIIIAATQSLRALTGTVGLGGNGQFMRLSAL 175 (191)
T ss_pred eEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcEEECCeeEEEeHHHH
Confidence 99988765431 1 112222334455666655555557899999999998
No 37
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=99.68 E-value=1.4e-16 Score=156.50 Aligned_cols=138 Identities=28% Similarity=0.387 Sum_probs=105.3
Q ss_pred EEEEecCCCCCCcHHHHHHHHhhhcCCCCCcceEEEeccccccCCCccccccchhHHHHhhhh----ccccCCCC-cccc
Q 003073 553 FLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINL----RGLDGIQG-PVYV 627 (850)
Q Consensus 553 ~I~ilDAD~~~~~pdfLr~tv~fF~DP~~G~~v~~VQtPQrF~~id~~Dryan~~~vFfdi~~----~glDgiqg-p~yv 627 (850)
+|+++|||+. +.+++|++++++|.+| ++++||+|..+++ .+..+.+.+.++|.... ...+..+. ....
T Consensus 1 ~v~~~DaDt~-~~~d~l~~~~~~~~~~----~~~~vq~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (193)
T PF13632_consen 1 YVLFLDADTR-LPPDFLERLVAALEDP----KVDAVQGPIIFRN--RGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLS 73 (193)
T ss_pred CEEEEcCCCC-CChHHHHHHHHHHhCC----CceEEEccEEecC--CCChhheeehhhhhhhhhhhHHHHHhcCCCcccc
Confidence 5899999999 5799999999999988 8999999999863 34556666666664321 11122222 2345
Q ss_pred ccchhhhhhhhcCCCCCCCCCCCCCCCcccccCCCccccCCcCccCCccccCCCCCCCCCccccchhhhhcccCCCCchh
Q 003073 628 GTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDE 707 (850)
Q Consensus 628 GTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (850)
|+|.++||+||
T Consensus 74 G~~~~~r~~~l--------------------------------------------------------------------- 84 (193)
T PF13632_consen 74 GSGMLFRREAL--------------------------------------------------------------------- 84 (193)
T ss_pred CcceeeeHHHH---------------------------------------------------------------------
Confidence 66666666665
Q ss_pred hHHHhhhhHHHHhhcchHHHHHhHhhhcCCCCCCcchhhHHHHhhhhccccccccCccccccceeecccchhHHHHHHHH
Q 003073 708 KSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMH 787 (850)
Q Consensus 708 ~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~l~eai~v~sC~YE~~T~WG~evGW~y~SITEDi~Tg~rLh 787 (850)
.++||++. ..+++||++++++|.
T Consensus 85 -------------------------~~vg~~~~--------------------------------~~~~~ED~~l~~~l~ 107 (193)
T PF13632_consen 85 -------------------------REVGGFDD--------------------------------PFSIGEDMDLGFRLR 107 (193)
T ss_pred -------------------------HHhCcccc--------------------------------cccccchHHHHHHHH
Confidence 45675430 579999999999999
Q ss_pred HCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHHhhhh
Q 003073 788 ARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGS 825 (850)
Q Consensus 788 ~rGwRsvY~~p~~aaf~G~aP~tls~~lkQR~RWA~G~ 825 (850)
++||++.|++... ++.++|.|+.++++||.||+.|.
T Consensus 108 ~~G~~~~~~~~~~--~~~~~p~t~~~~~~Qr~RW~~g~ 143 (193)
T PF13632_consen 108 RAGYRIVYVPDAI--VYTEAPPTFRAFIRQRRRWARGA 143 (193)
T ss_pred HCCCEEEEecccc--eeeeCCCCHHHHHHHHHHHHhhh
Confidence 9999999997643 38999999999999999999996
No 38
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.64 E-value=8.2e-16 Score=150.41 Aligned_cols=102 Identities=21% Similarity=0.121 Sum_probs=65.0
Q ss_pred cCchhhhhHHHHHhhc-ccCCCCEEEEecCCCCCCcHHHHHHHHhhhcCCCCCcceEEEeccccccCCCcccc---ccch
Q 003073 531 HHKKAGAMNALVRVSA-VLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDR---YANR 606 (850)
Q Consensus 531 hh~KAGnLNalLrvSa-vlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~DP~~G~~v~~VQtPQrF~~id~~Dr---yan~ 606 (850)
+.+|++|||.+++... .-+++++|+++|||.+ +.|++|.+++..|.+. ..+||+..+..+.+.+-. +.-.
T Consensus 61 ~~gk~~aln~g~~~a~~~~~~~d~v~~~DaD~~-~~p~~l~~l~~~~~~~-----~~~v~g~~~~~~~~~~~~~~~~~~~ 134 (183)
T cd06438 61 RRGKGYALDFGFRHLLNLADDPDAVVVFDADNL-VDPNALEELNARFAAG-----ARVVQAYYNSKNPDDSWITRLYAFA 134 (183)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC-CChhHHHHHHHHHhhC-----CCeeEEEEeeeCCccCHHHHHHHHH
Confidence 4579999999987421 1246999999999999 5799999999998653 346888766655433211 1111
Q ss_pred hHHHHhhhhccccCCCCc-cccccchhhhhhhh
Q 003073 607 NTVFFDINLRGLDGIQGP-VYVGTGCVFNRTAL 638 (850)
Q Consensus 607 ~~vFfdi~~~glDgiqgp-~yvGTGcvfRR~AL 638 (850)
..+++.+...+...+.+. .+.|+|.+|||++|
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l 167 (183)
T cd06438 135 FLVFNRLRPLGRSNLGLSCQLGGTGMCFPWAVL 167 (183)
T ss_pred HHHHHHHHHHHHHHcCCCeeecCchhhhHHHHH
Confidence 222222333344444443 34677777777776
No 39
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.62 E-value=9.8e-15 Score=142.65 Aligned_cols=121 Identities=22% Similarity=0.311 Sum_probs=90.6
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhhHhHHHhhCCCCCCchh
Q 003073 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 428 (850)
Q Consensus 349 P~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~WvPFCkk~~IepRaPe~ 428 (850)
|.|+|+||+|| |....+.+||.|++++.|| .++|+|+|||+.+.|.+.+.+
T Consensus 1 p~vsiii~~~n---~~~~~l~~~l~sl~~q~~~--~~eiivvd~gs~d~~~~~~~~------------------------ 51 (202)
T cd04184 1 PLISIVMPVYN---TPEKYLREAIESVRAQTYP--NWELCIADDASTDPEVKRVLK------------------------ 51 (202)
T ss_pred CeEEEEEeccc---CcHHHHHHHHHHHHhCcCC--CeEEEEEeCCCCChHHHHHHH------------------------
Confidence 67999999999 7767899999999999998 589999999998743332221
Q ss_pred hhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeeccCCCC
Q 003073 429 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 508 (850)
Q Consensus 429 YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~rdhp~~iqV~l~~~G~~ 508 (850)
.| ..
T Consensus 52 --------------------------~~----------~~---------------------------------------- 55 (202)
T cd04184 52 --------------------------KY----------AA---------------------------------------- 55 (202)
T ss_pred --------------------------HH----------Hh----------------------------------------
Confidence 00 00
Q ss_pred CCCCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhh-cCCCCCcceEE
Q 003073 509 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKHVCY 587 (850)
Q Consensus 509 d~~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF-~DP~~G~~v~~ 587 (850)
..+++.++..+. ..+++.++|.+++ .+.++||+++|+|.+ +.|++|.+++..| .+| ++++
T Consensus 56 -----~~~~~~~~~~~~-----~~g~~~a~n~g~~----~a~~d~i~~ld~D~~-~~~~~l~~~~~~~~~~~----~~~~ 116 (202)
T cd04184 56 -----QDPRIKVVFREE-----NGGISAATNSALE----LATGEFVALLDHDDE-LAPHALYEVVKALNEHP----DADL 116 (202)
T ss_pred -----cCCCEEEEEccc-----CCCHHHHHHHHHH----hhcCCEEEEECCCCc-CChHHHHHHHHHHHhCC----CCCE
Confidence 001244444432 3478999999998 478999999999999 6899999999988 777 5777
Q ss_pred Eecccc
Q 003073 588 VQFPQR 593 (850)
Q Consensus 588 VQtPQr 593 (850)
|.+...
T Consensus 117 v~~~~~ 122 (202)
T cd04184 117 IYSDED 122 (202)
T ss_pred EEccHH
Confidence 765444
No 40
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.59 E-value=4.3e-14 Score=138.31 Aligned_cols=64 Identities=17% Similarity=0.141 Sum_probs=50.8
Q ss_pred EEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhc-CCCCCcceEEEecccccc
Q 003073 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DPNLGKHVCYVQFPQRFD 595 (850)
Q Consensus 518 lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~-DP~~G~~v~~VQtPQrF~ 595 (850)
+.|+.+++. .++++|+|.+++ .++|+||+++|+|.+ ..|++|.+++.+|. +| ++.+|.+.....
T Consensus 57 i~~i~~~~n-----~G~~~a~N~g~~----~a~gd~i~~lD~Dd~-~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~ 121 (201)
T cd04195 57 LKVVPLEKN-----RGLGKALNEGLK----HCTYDWVARMDTDDI-SLPDRFEKQLDFIEKNP----EIDIVGGGVLEF 121 (201)
T ss_pred eEEEEcCcc-----ccHHHHHHHHHH----hcCCCEEEEeCCccc-cCcHHHHHHHHHHHhCC----CeEEEcccEEEE
Confidence 455655542 468999999998 578999999999999 57999999999884 56 678887765543
No 41
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=99.47 E-value=1.7e-12 Score=137.37 Aligned_cols=110 Identities=19% Similarity=0.123 Sum_probs=84.9
Q ss_pred cEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhhHhHHHhhCCCCCCchhhhh
Q 003073 352 DIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFA 431 (850)
Q Consensus 352 DVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~WvPFCkk~~IepRaPe~YF~ 431 (850)
+|+||+|| |.+..+.+||.|+++..||....+|+|+|||+++.|.+.+.+.. .
T Consensus 1 SIIIp~~N---~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~--~---------------------- 53 (299)
T cd02510 1 SVIIIFHN---EALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEY--Y---------------------- 53 (299)
T ss_pred CEEEEEec---CcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHH--H----------------------
Confidence 58999999 87789999999999999986567999999999986555432200 0
Q ss_pred hhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeeccCCCCCCC
Q 003073 432 QKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAE 511 (850)
Q Consensus 432 ~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~rdhp~~iqV~l~~~G~~d~~ 511 (850)
.
T Consensus 54 ---------------------------------------~---------------------------------------- 54 (299)
T cd02510 54 ---------------------------------------K---------------------------------------- 54 (299)
T ss_pred ---------------------------------------h----------------------------------------
Confidence 0
Q ss_pred CCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhcC
Q 003073 512 GNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMD 578 (850)
Q Consensus 512 ~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~D 578 (850)
+..|++.++..++ ..+++.+.|.+++ .+.|+||+++|+|.+ +.|++|.+++-.+..
T Consensus 55 -~~~~~v~vi~~~~-----n~G~~~a~N~g~~----~A~gd~i~fLD~D~~-~~~~wL~~ll~~l~~ 110 (299)
T cd02510 55 -KYLPKVKVLRLKK-----REGLIRARIAGAR----AATGDVLVFLDSHCE-VNVGWLEPLLARIAE 110 (299)
T ss_pred -hcCCcEEEEEcCC-----CCCHHHHHHHHHH----HccCCEEEEEeCCcc-cCccHHHHHHHHHHh
Confidence 0012355555443 2468999999999 589999999999999 589999999998854
No 42
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.47 E-value=1.8e-12 Score=128.38 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=36.7
Q ss_pred ccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhh
Q 003073 351 VDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLT 398 (850)
Q Consensus 351 VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T 398 (850)
|+|+||+|| |+ ..+.+||.|++++.|+ .++|+|+|||+++.|
T Consensus 1 vsvii~~~n---~~-~~l~~~l~sl~~q~~~--~~evivvdd~s~d~~ 42 (221)
T cd02522 1 LSIIIPTLN---EA-ENLPRLLASLRRLNPL--PLEIIVVDGGSTDGT 42 (221)
T ss_pred CEEEEEccC---cH-HHHHHHHHHHHhccCC--CcEEEEEeCCCCccH
Confidence 689999999 76 4789999999999995 789999999998743
No 43
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.47 E-value=8e-13 Score=127.05 Aligned_cols=55 Identities=24% Similarity=0.141 Sum_probs=43.5
Q ss_pred CchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHh-hhcCCCCCcceEEEecccccc
Q 003073 532 HKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMC-FMMDPNLGKHVCYVQFPQRFD 595 (850)
Q Consensus 532 h~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~-fF~DP~~G~~v~~VQtPQrF~ 595 (850)
.++++++|.+++ .++++||+++|+|.+ ..++++.+++. +..++ ++.+|.+...+.
T Consensus 61 ~g~~~a~n~~~~----~a~~~~v~~ld~D~~-~~~~~~~~~~~~~~~~~----~~~~v~g~~~~~ 116 (202)
T cd06433 61 KGIYDAMNKGIA----LATGDIIGFLNSDDT-LLPGALLAVVAAFAEHP----EVDVVYGDVLLV 116 (202)
T ss_pred cCHHHHHHHHHH----HcCCCEEEEeCCCcc-cCchHHHHHHHHHHhCC----CccEEEeeeEEE
Confidence 368999999998 578999999999999 57899999995 44666 566776655443
No 44
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.46 E-value=8.7e-13 Score=129.17 Aligned_cols=119 Identities=19% Similarity=0.217 Sum_probs=90.3
Q ss_pred cEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhhHhHHHhhCCCCCCchhhhh
Q 003073 352 DIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFA 431 (850)
Q Consensus 352 DVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~WvPFCkk~~IepRaPe~YF~ 431 (850)
+|+||||| |+ ..+.++|.|++.+.|| +++|+|+|||+.+.|.+.+.+.+ +
T Consensus 1 sIvIp~yn---~~-~~l~~~l~sl~~q~~~--~~eiiVvddgS~d~t~~~~~~~~----------~-------------- 50 (214)
T cd04196 1 AVLMATYN---GE-KYLREQLDSILAQTYK--NDELIISDDGSTDGTVEIIKEYI----------D-------------- 50 (214)
T ss_pred CEEEEecC---cH-HHHHHHHHHHHhCcCC--CeEEEEEeCCCCCCcHHHHHHHH----------h--------------
Confidence 58999999 76 7889999999999999 79999999999986655443210 0
Q ss_pred hhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeeccCCCCCCC
Q 003073 432 QKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAE 511 (850)
Q Consensus 432 ~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~rdhp~~iqV~l~~~G~~d~~ 511 (850)
.||
T Consensus 51 -------------------------------------------------------------~~~---------------- 53 (214)
T cd04196 51 -------------------------------------------------------------KDP---------------- 53 (214)
T ss_pred -------------------------------------------------------------cCC----------------
Confidence 011
Q ss_pred CCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhh-hcCCCCCcceEEEec
Q 003073 512 GNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCF-MMDPNLGKHVCYVQF 590 (850)
Q Consensus 512 ~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~f-F~DP~~G~~v~~VQt 590 (850)
+.++++..++ .+++++|+|.++. .++|+||+++|+|.+ ..|++|.+++-+ +.++ ..+++.+
T Consensus 54 ----~~~~~~~~~~-----~~G~~~~~n~g~~----~~~g~~v~~ld~Dd~-~~~~~l~~~~~~~~~~~----~~~~~~~ 115 (214)
T cd04196 54 ----FIIILIRNGK-----NLGVARNFESLLQ----AADGDYVFFCDQDDI-WLPDKLERLLKAFLKDD----KPLLVYS 115 (214)
T ss_pred ----ceEEEEeCCC-----CccHHHHHHHHHH----hCCCCEEEEECCCcc-cChhHHHHHHHHHhcCC----CceEEec
Confidence 1134444443 3578999999988 588999999999999 589999999998 5666 6777777
Q ss_pred ccccc
Q 003073 591 PQRFD 595 (850)
Q Consensus 591 PQrF~ 595 (850)
...+.
T Consensus 116 ~~~~~ 120 (214)
T cd04196 116 DLELV 120 (214)
T ss_pred CcEEE
Confidence 65543
No 45
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=99.43 E-value=6.9e-12 Score=128.75 Aligned_cols=51 Identities=16% Similarity=0.065 Sum_probs=42.5
Q ss_pred CchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhcCCCCCcceEEEecc
Q 003073 532 HKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFP 591 (850)
Q Consensus 532 h~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~DP~~G~~v~~VQtP 591 (850)
.+|++|+|++++ .+.|+||+++|+|.+ .+|++|.+++..+.++ +..+|...
T Consensus 79 ~G~~~a~n~g~~----~a~g~~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~ 129 (243)
T PLN02726 79 LGLGTAYIHGLK----HASGDFVVIMDADLS-HHPKYLPSFIKKQRET----GADIVTGT 129 (243)
T ss_pred CCHHHHHHHHHH----HcCCCEEEEEcCCCC-CCHHHHHHHHHHHHhc----CCcEEEEc
Confidence 368999999998 578999999999999 6899999999988665 45556554
No 46
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=99.43 E-value=3.9e-12 Score=127.52 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=38.8
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHH
Q 003073 353 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEAL 402 (850)
Q Consensus 353 VfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L 402 (850)
|+||+|| +. ..+..||.|++++.|| ..++|+|+|||+.+.|.+.+
T Consensus 1 ViIp~yn---~~-~~l~~~l~sl~~q~~~-~~~eiiVvDd~S~d~t~~i~ 45 (219)
T cd06913 1 IILPVHN---GE-QWLDECLESVLQQDFE-GTLELSVFNDASTDKSAEII 45 (219)
T ss_pred CEEeecC---cH-HHHHHHHHHHHhCCCC-CCEEEEEEeCCCCccHHHHH
Confidence 6899999 65 7999999999999998 46999999999998665543
No 47
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=99.42 E-value=5.1e-12 Score=121.60 Aligned_cols=42 Identities=19% Similarity=0.370 Sum_probs=37.3
Q ss_pred CchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhcCC
Q 003073 532 HKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDP 579 (850)
Q Consensus 532 h~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~DP 579 (850)
.++++++|.+++ .++|+||+++|+|.+ +.|++|.+++.++ ++
T Consensus 65 ~~~~~~~n~g~~----~a~g~~i~~lD~D~~-~~~~~l~~~~~~~-~~ 106 (182)
T cd06420 65 FRKAKIRNKAIA----AAKGDYLIFIDGDCI-PHPDFIADHIELA-EP 106 (182)
T ss_pred hhHHHHHHHHHH----HhcCCEEEEEcCCcc-cCHHHHHHHHHHh-CC
Confidence 378999999998 588999999999999 5899999999988 44
No 48
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.38 E-value=1.1e-11 Score=115.93 Aligned_cols=51 Identities=25% Similarity=0.200 Sum_probs=42.0
Q ss_pred CchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhh-cCCCCCcceEEEecc
Q 003073 532 HKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKHVCYVQFP 591 (850)
Q Consensus 532 h~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF-~DP~~G~~v~~VQtP 591 (850)
.++++|+|.+++ .+++++|+++|+|.+ +.+++|.+++-.+ .++ ++++|...
T Consensus 60 ~g~~~a~n~~~~----~~~~~~i~~~D~D~~-~~~~~l~~~~~~~~~~~----~~~~~~~~ 111 (166)
T cd04186 60 LGFGAGNNQGIR----EAKGDYVLLLNPDTV-VEPGALLELLDAAEQDP----DVGIVGPK 111 (166)
T ss_pred cChHHHhhHHHh----hCCCCEEEEECCCcE-ECccHHHHHHHHHHhCC----CceEEEcc
Confidence 478999999998 468999999999999 5799999999865 444 67777554
No 49
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=99.37 E-value=2.6e-12 Score=128.51 Aligned_cols=60 Identities=20% Similarity=0.089 Sum_probs=51.3
Q ss_pred cCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhcCCCCCcceEEEeccccccCCC
Q 003073 531 HHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGID 598 (850)
Q Consensus 531 hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~DP~~G~~v~~VQtPQrF~~id 598 (850)
-+.|..||-++++. ..++++|+++|+|.. .+|++|++++..|.|| ++++|.++.++.+.+
T Consensus 15 ~N~Kv~nL~~~~~~---~a~~d~~~~~DsDi~-v~p~~L~~lv~~l~~p----~vglVt~~~~~~~~~ 74 (175)
T PF13506_consen 15 CNPKVNNLAQGLEA---GAKYDYLVISDSDIR-VPPDYLRELVAPLADP----GVGLVTGLPRGVPAR 74 (175)
T ss_pred CChHHHHHHHHHHh---hCCCCEEEEECCCee-ECHHHHHHHHHHHhCC----CCcEEEecccccCCc
Confidence 46899999999982 289999999999999 5799999999999999 799998876654443
No 50
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=99.35 E-value=3.2e-11 Score=119.80 Aligned_cols=51 Identities=12% Similarity=0.066 Sum_probs=42.5
Q ss_pred CchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhcCCCCCcceEEEecc
Q 003073 532 HKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFP 591 (850)
Q Consensus 532 h~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~DP~~G~~v~~VQtP 591 (850)
.++++|+|++++ .+.|++|+++|+|.. ..|++|..++..+.++ +..+|..+
T Consensus 64 ~G~~~a~n~g~~----~a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~ 114 (224)
T cd06442 64 RGLGSAYIEGFK----AARGDVIVVMDADLS-HPPEYIPELLEAQLEG----GADLVIGS 114 (224)
T ss_pred CChHHHHHHHHH----HcCCCEEEEEECCCC-CCHHHHHHHHHHHhcC----CCCEEEEe
Confidence 468999999998 578999999999999 5899999999987665 35556554
No 51
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.34 E-value=2.8e-11 Score=119.11 Aligned_cols=56 Identities=16% Similarity=0.194 Sum_probs=43.2
Q ss_pred CchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhcCCCCCcceEEEeccccc
Q 003073 532 HKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRF 594 (850)
Q Consensus 532 h~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~DP~~G~~v~~VQtPQrF 594 (850)
++.+.++|.++... ...++++|+++|+|.+ ..|++|++++..+.++ ++++|. |.++
T Consensus 62 ~g~~~~~n~~~~~a-~~~~~d~v~~ld~D~~-~~~~~l~~l~~~~~~~----~~~~~~-~~~~ 117 (202)
T cd04185 62 LGGAGGFYEGVRRA-YELGYDWIWLMDDDAI-PDPDALEKLLAYADKD----NPQFLA-PLVL 117 (202)
T ss_pred cchhhHHHHHHHHH-hccCCCEEEEeCCCCC-cChHHHHHHHHHHhcC----CceEec-ceeE
Confidence 35788899888743 2457999999999999 5799999999998877 566653 4343
No 52
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=99.31 E-value=1.5e-11 Score=123.55 Aligned_cols=64 Identities=13% Similarity=0.167 Sum_probs=44.0
Q ss_pred EEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHH---hhh-cCCCCCcceEEEecccc
Q 003073 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAM---CFM-MDPNLGKHVCYVQFPQR 593 (850)
Q Consensus 518 lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv---~fF-~DP~~G~~v~~VQtPQr 593 (850)
+.++..++. -++++|+|.+++.+.- .+++||+++|+|.+ .+|++|.+++ -.+ .++ .++++ +|+.
T Consensus 49 i~~i~~~~n-----~G~~~a~N~g~~~a~~-~~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~~~~~----~~~~~-~~~~ 116 (237)
T cd02526 49 IELIHLGEN-----LGIAKALNIGIKAALE-NGADYVLLFDQDSV-PPPDMVEKLLAYKILSDKNS----NIGAV-GPRI 116 (237)
T ss_pred EEEEECCCc-----eehHHhhhHHHHHHHh-CCCCEEEEECCCCC-cCHhHHHHHHHHHHhhccCC----CeEEE-eeeE
Confidence 556665543 3599999999984211 14599999999999 5799999995 333 344 56654 4543
No 53
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=99.30 E-value=3.5e-12 Score=117.91 Aligned_cols=164 Identities=21% Similarity=0.207 Sum_probs=110.4
Q ss_pred cEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhhHhHHHhhCCCCCCchhhhh
Q 003073 352 DIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFA 431 (850)
Q Consensus 352 DVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~WvPFCkk~~IepRaPe~YF~ 431 (850)
+|+||||| | +..+.+|+.|++.+.++ ..+|+|+|||+++.|.+.+.+..
T Consensus 1 Svvip~~n---~-~~~l~~~l~sl~~q~~~--~~eiivvdd~s~d~~~~~~~~~~------------------------- 49 (169)
T PF00535_consen 1 SVVIPTYN---E-AEYLERTLESLLKQTDP--DFEIIVVDDGSTDETEEILEEYA------------------------- 49 (169)
T ss_dssp EEEEEESS-----TTTHHHHHHHHHHHSGC--EEEEEEEECS-SSSHHHHHHHHH-------------------------
T ss_pred CEEEEeeC---C-HHHHHHHHHHHhhccCC--CEEEEEecccccccccccccccc-------------------------
Confidence 58999999 7 47899999999999555 78999999999875444332210
Q ss_pred hhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeeccCCCCCCC
Q 003073 432 QKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAE 511 (850)
Q Consensus 432 ~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~rdhp~~iqV~l~~~G~~d~~ 511 (850)
+
T Consensus 50 ----------------------------------------~--------------------------------------- 50 (169)
T PF00535_consen 50 ----------------------------------------E--------------------------------------- 50 (169)
T ss_dssp ----------------------------------------C---------------------------------------
T ss_pred ----------------------------------------c---------------------------------------
Confidence 0
Q ss_pred CCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhcCCCCCcceEEEecc
Q 003073 512 GNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFP 591 (850)
Q Consensus 512 ~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~DP~~G~~v~~VQtP 591 (850)
..+++.|+.+++. .++++++|.+++ ++.++||+++|+|.++ .+++|.+++.++.+. +..+.+....
T Consensus 51 --~~~~i~~i~~~~n-----~g~~~~~n~~~~----~a~~~~i~~ld~D~~~-~~~~l~~l~~~~~~~--~~~~~~~~~~ 116 (169)
T PF00535_consen 51 --SDPNIRYIRNPEN-----LGFSAARNRGIK----HAKGEYILFLDDDDII-SPDWLEELVEALEKN--PPDVVIGSVI 116 (169)
T ss_dssp --CSTTEEEEEHCCC-----SHHHHHHHHHHH----H--SSEEEEEETTEEE--TTHHHHHHHHHHHC--TTEEEEEEEE
T ss_pred --ccccccccccccc-----cccccccccccc----ccceeEEEEeCCCceE-cHHHHHHHHHHHHhC--CCcEEEEEEE
Confidence 0024888888852 389999999999 6899999999999995 688999999999763 1234444333
Q ss_pred ccccCCCccccccc--hhHHHHhhhhccccCCCCccccccchhhhhhhhc
Q 003073 592 QRFDGIDRNDRYAN--RNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (850)
Q Consensus 592 QrF~~id~~Dryan--~~~vFfdi~~~glDgiqgp~yvGTGcvfRR~ALy 639 (850)
....+......... ....++............+.++|.+.++||++|.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~ 166 (169)
T PF00535_consen 117 YIDDDNRYPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVFE 166 (169)
T ss_dssp EEECTTETEECCCTSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHHH
T ss_pred EecCCccccccccchhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHHH
Confidence 33333222221111 1223334444555667788999999999999983
No 54
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.26 E-value=1.2e-09 Score=123.84 Aligned_cols=181 Identities=23% Similarity=0.359 Sum_probs=118.8
Q ss_pred cEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhh-cCCCCCcceEEEecccccc
Q 003073 517 RLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKHVCYVQFPQRFD 595 (850)
Q Consensus 517 ~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF-~DP~~G~~v~~VQtPQrF~ 595 (850)
++.|-.|.+ |-.-||||+-...+-= =+..++++|+|||.+ -..+.|-+++..| .+| +.|++||--.--
T Consensus 213 ~ifYRrRr~----n~~RKaGNIaDfcrRw--G~~Y~~MlVLDADSv-Mtgd~lvrLv~~ME~~P----~aGlIQt~P~~~ 281 (736)
T COG2943 213 NIFYRRRRR----NVKRKAGNIADFCRRW--GSAYSYMLVLDADSV-MTGDCLVRLVRLMEANP----DAGLIQTSPKAS 281 (736)
T ss_pred ceeeehHhh----hhcccccCHHHHHHHh--CcccceEEEeecccc-cCchHHHHHHHHHhhCC----CCceeecchhhc
Confidence 366666655 4458999999988742 256799999999999 5899999999988 678 799999853332
Q ss_pred CCCccccccch----hHHHHhhhhccccCCCCc--cccccchhhhhhhhcCCCCCCCCCCCCCCCcccccCCCccccCCc
Q 003073 596 GIDRNDRYANR----NTVFFDINLRGLDGIQGP--VYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKS 669 (850)
Q Consensus 596 ~id~~Dryan~----~~vFfdi~~~glDgiqgp--~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (850)
|-|. -|+-- ..|+=-+.--|+.-||+. -|=|-+++.|-+|.
T Consensus 282 gg~T--L~AR~qQFatrvYGpl~~~GLawW~~~Es~yWGHNAIIRt~aF------------------------------- 328 (736)
T COG2943 282 GGDT--LYARCQQFATRVYGPLFTAGLAWWQLGESHYWGHNAIIRTKAF------------------------------- 328 (736)
T ss_pred Ccch--HHHHHHHHHHHHhchHHhhhhHHHhccccccccccceeechhh-------------------------------
Confidence 2221 11110 011111233455555553 25555555555554
Q ss_pred CccCCccccCCCCCCCCCccccchhhhhcccCCCCchhhHHHhhhhHHHHhhcchHHHHHhHhhhcCCCCCCcchhhHHH
Q 003073 670 SKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLK 749 (850)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~l~ 749 (850)
.+.-|.|+-
T Consensus 329 ---------------------------------------------------------------~~hcgLp~L-------- 337 (736)
T COG2943 329 ---------------------------------------------------------------IEHCGLPPL-------- 337 (736)
T ss_pred ---------------------------------------------------------------HHhcCCCCC--------
Confidence 222222210
Q ss_pred HhhhhccccccccCccccccceeecccchhHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHHhhhhHHHH
Q 003073 750 EAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEIL 829 (850)
Q Consensus 750 eai~v~sC~YE~~T~WG~evGW~y~SITEDi~Tg~rLh~rGwRsvY~~p~~aaf~G~aP~tls~~lkQR~RWA~G~lQIl 829 (850)
.-+...| -..++.|+.-+--|.+.||- +.+.+.+...+++.|.|+-+++++-.||+.|++|-+
T Consensus 338 ----------pG~~pFg------G~ilSHDfvEAALmRRaGW~-v~ia~dL~GSyEE~PpnLlD~l~RDRRWC~GNLqh~ 400 (736)
T COG2943 338 ----------PGRGPFG------GHILSHDFVEAALMRRAGWG-VWIAYDLDGSYEELPPNLLDELKRDRRWCHGNLQHF 400 (736)
T ss_pred ----------CCCCCCC------ccccchHHHHHHHHhhcCce-EEEeccCCCchhhCCchHHHHHhhhhHhhhcchhhc
Confidence 0000111 13567788888888999994 555566777799999999999999999999999976
No 55
>PRK10073 putative glycosyl transferase; Provisional
Probab=99.24 E-value=1.9e-10 Score=125.25 Aligned_cols=110 Identities=14% Similarity=0.208 Sum_probs=85.8
Q ss_pred CCCcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhhHhHHHhhCCCCCCc
Q 003073 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAP 426 (850)
Q Consensus 347 ~lP~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~WvPFCkk~~IepRaP 426 (850)
..|.|+|+||+|| ++ ..+.++|.|++++.|+ .++|+|+|||+++.|.+.+.+
T Consensus 4 ~~p~vSVIIP~yN---~~-~~L~~~l~Sl~~Qt~~--~~EIIiVdDgStD~t~~i~~~---------------------- 55 (328)
T PRK10073 4 STPKLSIIIPLYN---AG-KDFRAFMESLIAQTWT--ALEIIIVNDGSTDNSVEIAKH---------------------- 55 (328)
T ss_pred CCCeEEEEEeccC---CH-HHHHHHHHHHHhCCCC--CeEEEEEeCCCCccHHHHHHH----------------------
Confidence 3588999999999 65 6899999999999998 689999999999865553322
Q ss_pred hhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeeccCC
Q 003073 427 EWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENG 506 (850)
Q Consensus 427 e~YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~rdhp~~iqV~l~~~G 506 (850)
|.+
T Consensus 56 -----------------------------~~~------------------------------------------------ 58 (328)
T PRK10073 56 -----------------------------YAE------------------------------------------------ 58 (328)
T ss_pred -----------------------------HHh------------------------------------------------
Confidence 100
Q ss_pred CCCCCCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhcCC
Q 003073 507 GLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDP 579 (850)
Q Consensus 507 ~~d~~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~DP 579 (850)
..|++.++..+ ..+.++|.|.+|. .++|+||+++|+|.+ ..|++|.+++..+.++
T Consensus 59 -------~~~~i~vi~~~------n~G~~~arN~gl~----~a~g~yi~flD~DD~-~~p~~l~~l~~~~~~~ 113 (328)
T PRK10073 59 -------NYPHVRLLHQA------NAGVSVARNTGLA----VATGKYVAFPDADDV-VYPTMYETLMTMALED 113 (328)
T ss_pred -------hCCCEEEEECC------CCChHHHHHHHHH----hCCCCEEEEECCCCc-cChhHHHHHHHHHHhC
Confidence 01235555422 2478999999999 689999999999999 5799999999887543
No 56
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=99.24 E-value=9.5e-11 Score=107.90 Aligned_cols=161 Identities=32% Similarity=0.405 Sum_probs=103.7
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhhHhHHHhhCCCCCCchhhhhh
Q 003073 353 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQ 432 (850)
Q Consensus 353 VfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~WvPFCkk~~IepRaPe~YF~~ 432 (850)
|+||+|| |+ ..+.+||.|++.+.|+ .++|+|+|||+++.|.+.+.+..
T Consensus 1 Viip~~n---~~-~~l~~~l~sl~~q~~~--~~~iivvdd~s~d~t~~~~~~~~-------------------------- 48 (180)
T cd06423 1 IIVPAYN---EE-AVIERTIESLLALDYP--KLEVIVVDDGSTDDTLEILEELA-------------------------- 48 (180)
T ss_pred CeecccC---hH-HHHHHHHHHHHhCCCC--ceEEEEEeCCCccchHHHHHHHh--------------------------
Confidence 6899999 76 8999999999999996 68999999999985444322200
Q ss_pred hcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeeccCCCCCCCC
Q 003073 433 KIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEG 512 (850)
Q Consensus 433 k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~rdhp~~iqV~l~~~G~~d~~~ 512 (850)
. . .
T Consensus 49 --------------------------------------~----~-----------------~------------------ 51 (180)
T cd06423 49 --------------------------------------A----L-----------------Y------------------ 51 (180)
T ss_pred --------------------------------------c----c-----------------c------------------
Confidence 0 0 0
Q ss_pred CCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHH-hhhcCCCCCcceEEEecc
Q 003073 513 NELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAM-CFMMDPNLGKHVCYVQFP 591 (850)
Q Consensus 513 ~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv-~fF~DP~~G~~v~~VQtP 591 (850)
.+.++++..++ ..+|+.++|.+++ .+++++|+++|+|.+ ..+++|.+++ .++.++ ++.+|...
T Consensus 52 --~~~~~~~~~~~-----~~g~~~~~n~~~~----~~~~~~i~~~D~D~~-~~~~~l~~~~~~~~~~~----~~~~v~~~ 115 (180)
T cd06423 52 --IRRVLVVRDKE-----NGGKAGALNAGLR----HAKGDIVVVLDADTI-LEPDALKRLVVPFFADP----KVGAVQGR 115 (180)
T ss_pred --cceEEEEEecc-----cCCchHHHHHHHH----hcCCCEEEEECCCCC-cChHHHHHHHHHhccCC----CeeeEeee
Confidence 01244444443 3469999999998 468999999999999 5799999994 456666 56666655
Q ss_pred ccccCCCccccccchh-HHH---HhhhhccccCCC-Cccccccchhhhhhhhc
Q 003073 592 QRFDGIDRNDRYANRN-TVF---FDINLRGLDGIQ-GPVYVGTGCVFNRTALY 639 (850)
Q Consensus 592 QrF~~id~~Dryan~~-~vF---fdi~~~glDgiq-gp~yvGTGcvfRR~ALy 639 (850)
........+ .+.... ..| +.....+..... -..+.|++.+|||++|.
T Consensus 116 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 167 (180)
T cd06423 116 VRVRNGSEN-LLTRLQAIEYLSIFRLGRRAQSALGGVLVLSGAFGAFRREALR 167 (180)
T ss_pred EEEecCcCc-ceeccchheecceeeeeeehhheecceeecCchHHHHHHHHHH
Confidence 444332211 111111 111 111111111111 25578899999999995
No 57
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=99.20 E-value=3e-10 Score=113.34 Aligned_cols=50 Identities=18% Similarity=0.094 Sum_probs=41.1
Q ss_pred chhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhcCCCCCcceEEEecc
Q 003073 533 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFP 591 (850)
Q Consensus 533 ~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~DP~~G~~v~~VQtP 591 (850)
+|++|+|.+++ .+.|++|+++|+|.. ..|++|.+++..+.++ ...+|...
T Consensus 69 G~~~a~~~g~~----~a~gd~i~~ld~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~ 118 (211)
T cd04188 69 GKGGAVRAGML----AARGDYILFADADLA-TPFEELEKLEEALKTS----GYDIAIGS 118 (211)
T ss_pred CcHHHHHHHHH----HhcCCEEEEEeCCCC-CCHHHHHHHHHHHhcc----CCcEEEEE
Confidence 69999999999 578999999999999 6899999999986554 23445554
No 58
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=99.13 E-value=4.1e-10 Score=108.44 Aligned_cols=163 Identities=18% Similarity=0.133 Sum_probs=104.7
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhhHhHHHhhCCCCCCchhhhhh
Q 003073 353 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQ 432 (850)
Q Consensus 353 VfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~WvPFCkk~~IepRaPe~YF~~ 432 (850)
|+||+|| |+ ..+.+|+.++..+.|+....+|+|+|||+.+.|.+.+.+.
T Consensus 1 iii~~~n---~~-~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~--------------------------- 49 (185)
T cd04179 1 VVIPAYN---EE-ENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIAREL--------------------------- 49 (185)
T ss_pred CeecccC---hH-hhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHH---------------------------
Confidence 6899999 65 7889999999999996557999999999987554433220
Q ss_pred hcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeeccCCCCCCCC
Q 003073 433 KIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEG 512 (850)
Q Consensus 433 k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~rdhp~~iqV~l~~~G~~d~~~ 512 (850)
. +
T Consensus 50 ------------------------~----------~-------------------------------------------- 51 (185)
T cd04179 50 ------------------------A----------A-------------------------------------------- 51 (185)
T ss_pred ------------------------H----------H--------------------------------------------
Confidence 0 0
Q ss_pred CCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhcCCCCCcceEEEeccc
Q 003073 513 NELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQ 592 (850)
Q Consensus 513 ~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~DP~~G~~v~~VQtPQ 592 (850)
..|.+.++..+++. +|++|+|.+++ .+.|++|+++|+|.. ..|++|.+++.++..+ ...+|+.+.
T Consensus 52 -~~~~~~~~~~~~n~-----G~~~a~n~g~~----~a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~~ 116 (185)
T cd04179 52 -RVPRVRVIRLSRNF-----GKGAAVRAGFK----AARGDIVVTMDADLQ-HPPEDIPKLLEKLLEG----GADVVIGSR 116 (185)
T ss_pred -hCCCeEEEEccCCC-----CccHHHHHHHH----HhcCCEEEEEeCCCC-CCHHHHHHHHHHHhcc----CCcEEEEEe
Confidence 00123444444433 59999999998 578899999999999 5899999999986554 466777775
Q ss_pred cccCCCccc-cccch-hHHHHhhhhccccCCCCccccccchhhhhhhhcC
Q 003073 593 RFDGIDRND-RYANR-NTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYG 640 (850)
Q Consensus 593 rF~~id~~D-ryan~-~~vFfdi~~~glDgiqgp~yvGTGcvfRR~ALyG 640 (850)
.+.+..... .+... ...++. ....+.+..-....|...+|||++|..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~ 165 (185)
T cd04179 117 FVRGGGAGMPLLRRLGSRLFNF-LIRLLLGVRISDTQSGFRLFRREVLEA 165 (185)
T ss_pred ecCCCcccchHHHHHHHHHHHH-HHHHHcCCCCcCCCCceeeeHHHHHHH
Confidence 554422101 11111 111111 111122233333344445799999953
No 59
>PRK10063 putative glycosyl transferase; Provisional
Probab=99.10 E-value=2.2e-09 Score=112.51 Aligned_cols=50 Identities=18% Similarity=0.054 Sum_probs=39.7
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHHHHcCC-CCCCCcEEEEecCCCchhhHHHH
Q 003073 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVD-YPVDKVSCYVSDDGAAMLTFEAL 402 (850)
Q Consensus 349 P~VDVfVpt~nP~kEp~~vv~~Tvls~lalD-YP~~kl~vyV~DDG~~~~T~e~L 402 (850)
|.|+|+||||| |. ..+..||.|++++. .+...++|+|+|||+++.|.+.+
T Consensus 1 ~~vSVIi~~yN---~~-~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~ 51 (248)
T PRK10063 1 MLLSVITVAFR---NL-EGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFL 51 (248)
T ss_pred CeEEEEEEeCC---CH-HHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHH
Confidence 57999999999 75 67899999998642 23337999999999999766643
No 60
>PRK10018 putative glycosyl transferase; Provisional
Probab=99.09 E-value=3.2e-09 Score=113.79 Aligned_cols=110 Identities=18% Similarity=0.353 Sum_probs=83.8
Q ss_pred CCCcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhhHhHHHhhCCCCCCc
Q 003073 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAP 426 (850)
Q Consensus 347 ~lP~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~WvPFCkk~~IepRaP 426 (850)
..|.|+|+||||| ++ ..+.+||.|++++.|| .++|+|+|||++. .+.+.+ +++ +
T Consensus 3 ~~p~VSVIip~yN---~~-~~l~~~l~Svl~Qt~~--~~EiIVVDDgS~~--~~~~~~---~~~-------~-------- 56 (279)
T PRK10018 3 DNPLISIYMPTWN---RQ-QLAIRAIKSVLRQDYS--NWEMIIVDDCSTS--WEQLQQ---YVT-------A-------- 56 (279)
T ss_pred CCCEEEEEEEeCC---CH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCC--HHHHHH---HHH-------H--------
Confidence 4688999999999 76 4567999999999998 5999999999973 222211 000 0
Q ss_pred hhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeeccCC
Q 003073 427 EWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENG 506 (850)
Q Consensus 427 e~YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~rdhp~~iqV~l~~~G 506 (850)
+
T Consensus 57 ---------------------------------------~---------------------------------------- 57 (279)
T PRK10018 57 ---------------------------------------L---------------------------------------- 57 (279)
T ss_pred ---------------------------------------c----------------------------------------
Confidence 0
Q ss_pred CCCCCCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhcC
Q 003073 507 GLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMD 578 (850)
Q Consensus 507 ~~d~~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~D 578 (850)
.-|++.|+..++ ..+++.|+|.++. .++|+||+++|+|.++ .|+.|.+++.++..
T Consensus 58 -------~~~ri~~i~~~~-----n~G~~~a~N~gi~----~a~g~~I~~lDaDD~~-~p~~l~~~~~~~~~ 112 (279)
T PRK10018 58 -------NDPRITYIHNDI-----NSGACAVRNQAIM----LAQGEYITGIDDDDEW-TPNRLSVFLAHKQQ 112 (279)
T ss_pred -------CCCCEEEEECCC-----CCCHHHHHHHHHH----HcCCCEEEEECCCCCC-CccHHHHHHHHHHh
Confidence 003577776554 3469999999998 6899999999999994 79999999988753
No 61
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=99.06 E-value=6e-09 Score=120.45 Aligned_cols=53 Identities=23% Similarity=0.290 Sum_probs=46.3
Q ss_pred ccchhHHHHHHHHHC--CcEEEEeCCCCCcccccCCCCHHHHHHHHHHHhhhhHHHH
Q 003073 775 SVTEDILTGFKMHAR--GWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEIL 829 (850)
Q Consensus 775 SITEDi~Tg~rLh~r--GwRsvY~~p~~aaf~G~aP~tls~~lkQR~RWA~G~lQIl 829 (850)
.+.||=.++..|.++ |||..|+..+.+ +..+|+|++.++.||+||..|++-.+
T Consensus 324 ~lGEDR~LttLlLk~~~~~k~~y~~~A~a--~T~aP~t~~vflsQRRRWinSTi~Nl 378 (527)
T PF03142_consen 324 DLGEDRWLTTLLLKQFPGYKTEYVPSAVA--YTDAPETFSVFLSQRRRWINSTIHNL 378 (527)
T ss_pred hcchhHHHHHHHHhhCCCceEEEcccccc--cccCCccHHHHHHHhhhccchhHhhH
Confidence 678998888777777 899999977666 89999999999999999999998554
No 62
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=99.00 E-value=5.5e-09 Score=109.51 Aligned_cols=68 Identities=19% Similarity=0.213 Sum_probs=48.2
Q ss_pred cEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhcCCCCCcceEEEeccccc
Q 003073 517 RLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRF 594 (850)
Q Consensus 517 ~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~DP~~G~~v~~VQtPQrF 594 (850)
++.|+.-++ ..+.|+|+|.+++.. .-.+++||+++|.|.+ +.+++|.+++.++..+ +.++++|. |..+
T Consensus 46 ~i~~i~~~~-----N~G~a~a~N~Gi~~a-~~~~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~--~~~~~~~~-~~~~ 113 (281)
T TIGR01556 46 KIALIHLGD-----NQGIAGAQNQGLDAS-FRRGVQGVLLLDQDSR-PGNAFLAAQWKLLSAE--NGQACALG-PRFF 113 (281)
T ss_pred CeEEEECCC-----CcchHHHHHHHHHHH-HHCCCCEEEEECCCCC-CCHHHHHHHHHHHHhc--CCceEEEC-CeEE
Confidence 355665443 236899999998842 1237899999999999 5799999999988542 22577775 4333
No 63
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=98.98 E-value=2.5e-10 Score=92.89 Aligned_cols=48 Identities=31% Similarity=0.941 Sum_probs=30.4
Q ss_pred ccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCcccccc
Q 003073 20 CQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (850)
Q Consensus 20 C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Yk 70 (850)
|.+|.+++ +++|..|.+| +|+|.|||.||..-++++++.||.||++|+
T Consensus 1 cp~C~e~~--d~~d~~~~PC-~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEEL--DETDKDFYPC-ECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B----CCCTT--SS-TTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCccccc--ccCCCccccC-cCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 77899997 8899999999 999999999999999889999999999996
No 64
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=98.98 E-value=4.8e-09 Score=113.74 Aligned_cols=51 Identities=20% Similarity=0.193 Sum_probs=43.0
Q ss_pred CchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhc-CCCCCcceEEEec
Q 003073 532 HKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DPNLGKHVCYVQF 590 (850)
Q Consensus 532 h~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~-DP~~G~~v~~VQt 590 (850)
.+|++|+|+++. .++|++|+++|||.+..+|++|.+++..|. +| .+.+|.+
T Consensus 101 ~Gkg~A~~~g~~----~a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~----~~~~V~g 152 (306)
T PRK13915 101 PGKGEALWRSLA----ATTGDIVVFVDADLINFDPMFVPGLLGPLLTDP----GVHLVKA 152 (306)
T ss_pred CCHHHHHHHHHH----hcCCCEEEEEeCccccCCHHHHHHHHHHHHhCC----CceEEEE
Confidence 479999999998 578999999999996457999999998775 77 5777765
No 65
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=98.96 E-value=1.7e-08 Score=110.46 Aligned_cols=54 Identities=13% Similarity=0.124 Sum_probs=42.1
Q ss_pred CCCCCcccEEEecCCCCCCCHHHHHHHHHHHHcC------CCCCCCcEEEEecCCCchhhHHHH
Q 003073 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAV------DYPVDKVSCYVSDDGAAMLTFEAL 402 (850)
Q Consensus 345 ~~~lP~VDVfVpt~nP~kEp~~vv~~Tvls~lal------DYP~~kl~vyV~DDG~~~~T~e~L 402 (850)
....|.|+|+||+|| |. ..+..++.++.+. .+|...++|+|+|||+++.|.+.+
T Consensus 66 ~~~~~~isVVIP~yN---e~-~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~ 125 (333)
T PTZ00260 66 KDSDVDLSIVIPAYN---EE-DRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVA 125 (333)
T ss_pred CCCCeEEEEEEeeCC---CH-HHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHH
Confidence 346789999999999 87 4678888877653 245557899999999999777654
No 66
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=98.93 E-value=9e-09 Score=99.94 Aligned_cols=103 Identities=15% Similarity=0.235 Sum_probs=63.3
Q ss_pred EEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhcCCCCCcceEEEeccccccCC
Q 003073 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGI 597 (850)
Q Consensus 518 lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~DP~~G~~v~~VQtPQrF~~i 597 (850)
+.++..++ ..+|++|+|++++ .+.+++|+++|+|.. ..+++|.+++..+... .++.+.. ....+
T Consensus 57 i~~i~~~~-----n~G~~~a~n~g~~----~a~~d~i~~~D~D~~-~~~~~l~~l~~~~~~~---~~~v~g~--~~~~~- 120 (181)
T cd04187 57 VKVIRLSR-----NFGQQAALLAGLD----HARGDAVITMDADLQ-DPPELIPEMLAKWEEG---YDVVYGV--RKNRK- 120 (181)
T ss_pred EEEEEecC-----CCCcHHHHHHHHH----hcCCCEEEEEeCCCC-CCHHHHHHHHHHHhCC---CcEEEEE--ecCCc-
Confidence 45554443 3479999999998 578999999999999 5899999999875321 2333322 22222
Q ss_pred Ccc-ccccchhHHHHhhhhccccCCCCccccccchhhhhhhhc
Q 003073 598 DRN-DRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (850)
Q Consensus 598 d~~-Dryan~~~vFfdi~~~glDgiqgp~yvGTGcvfRR~ALy 639 (850)
+.. .++.+. .|+. ....+.+..-+...|+..+|||+++-
T Consensus 121 ~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~ 160 (181)
T cd04187 121 ESWLKRLTSK--LFYR-LINKLSGVDIPDNGGDFRLMDRKVVD 160 (181)
T ss_pred chHHHHHHHH--HHHH-HHHHHcCCCCCCCCCCEEEEcHHHHH
Confidence 111 111111 1111 12223444556677888899999985
No 67
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=98.79 E-value=1.1e-07 Score=85.51 Aligned_cols=52 Identities=27% Similarity=0.330 Sum_probs=41.8
Q ss_pred cCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHh-hhcCCCCCcceEEEecc
Q 003073 531 HHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMC-FMMDPNLGKHVCYVQFP 591 (850)
Q Consensus 531 hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~-fF~DP~~G~~v~~VQtP 591 (850)
+.++++++|.++. ..++++++++|+|.+ ..|++|..++- +..++ +..+|+++
T Consensus 62 ~~g~~~~~~~~~~----~~~~d~v~~~d~D~~-~~~~~~~~~~~~~~~~~----~~~~v~~~ 114 (156)
T cd00761 62 NQGLAAARNAGLK----AARGEYILFLDADDL-LLPDWLERLVAELLADP----EADAVGGP 114 (156)
T ss_pred CCChHHHHHHHHH----HhcCCEEEEECCCCc-cCccHHHHHHHHHhcCC----CceEEecc
Confidence 4579999999998 458999999999999 57899999854 44555 57777776
No 68
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=98.77 E-value=2.1e-07 Score=99.10 Aligned_cols=62 Identities=15% Similarity=0.253 Sum_probs=44.9
Q ss_pred CchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhcCCCCCcceEEEeccccccCCCc
Q 003073 532 HKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDR 599 (850)
Q Consensus 532 h~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~DP~~G~~v~~VQtPQrF~~id~ 599 (850)
-.+|.|.|.++. .+++++|+++|+|.+ +.|++|.+++-+++.=.. ...+++-.|..|.+.+.
T Consensus 74 f~~a~arN~g~~----~A~~d~l~flD~D~i-~~~~~i~~~~~~~~~l~~-~~~~~~~~p~~yl~~~~ 135 (281)
T PF10111_consen 74 FSRAKARNIGAK----YARGDYLIFLDADCI-PSPDFIEKLLNHVKKLDK-NPNAFLVYPCLYLSEEG 135 (281)
T ss_pred cCHHHHHHHHHH----HcCCCEEEEEcCCee-eCHHHHHHHHHHHHHHhc-CCCceEEEeeeeccchh
Confidence 479999999998 589999999999999 589999999993211000 02355566766665443
No 69
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=98.73 E-value=2.2e-07 Score=99.75 Aligned_cols=122 Identities=24% Similarity=0.292 Sum_probs=87.7
Q ss_pred CCcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhhHhHHHhhCCCCCCch
Q 003073 348 LAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPE 427 (850)
Q Consensus 348 lP~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~WvPFCkk~~IepRaPe 427 (850)
-|.|.++|+||| +...+.+.+.++.++.||.+ .++++|+|+.+.|.+.+.+..
T Consensus 2 ~~~i~~iiv~yn----~~~~l~~~l~~l~~~~~~~~--~iv~vDn~s~d~~~~~~~~~~--------------------- 54 (305)
T COG1216 2 MPKISIIIVTYN----RGEDLVECLASLAAQTYPDD--VIVVVDNGSTDGSLEALKARF--------------------- 54 (305)
T ss_pred CcceEEEEEecC----CHHHHHHHHHHHhcCCCCCc--EEEEccCCCCCCCHHHHHhhc---------------------
Confidence 477999999999 35788999999999999964 344899999986555432210
Q ss_pred hhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeeccCCC
Q 003073 428 WYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGG 507 (850)
Q Consensus 428 ~YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~rdhp~~iqV~l~~~G~ 507 (850)
T Consensus 55 -------------------------------------------------------------------------------- 54 (305)
T COG1216 55 -------------------------------------------------------------------------------- 54 (305)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCC-EEEEecCCCCCCcHHHHHHHHhhhc-CCCCCcce
Q 003073 508 LDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGP-FLLNLDCDHYINNSKALREAMCFMM-DPNLGKHV 585 (850)
Q Consensus 508 ~d~~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge-~I~ilDAD~~~~~pdfLr~tv~fF~-DP~~G~~v 585 (850)
.|.+.|+.-.+.-| =||+.|.+++.. +.++. ++++|+-|.+ ..+++|.+++-.+. ++ .+
T Consensus 55 -------~~~v~~i~~~~NlG-----~agg~n~g~~~a--~~~~~~~~l~LN~D~~-~~~~~l~~ll~~~~~~~----~~ 115 (305)
T COG1216 55 -------FPNVRLIENGENLG-----FAGGFNRGIKYA--LAKGDDYVLLLNPDTV-VEPDLLEELLKAAEEDP----AA 115 (305)
T ss_pred -------CCcEEEEEcCCCcc-----chhhhhHHHHHH--hcCCCcEEEEEcCCee-eChhHHHHHHHHHHhCC----CC
Confidence 12355555444333 478888877731 34444 8999999977 68999999999874 44 67
Q ss_pred EEEecccccc
Q 003073 586 CYVQFPQRFD 595 (850)
Q Consensus 586 ~~VQtPQrF~ 595 (850)
++|+.-.+.+
T Consensus 116 ~~~~~~i~~~ 125 (305)
T COG1216 116 GVVGPLIRNY 125 (305)
T ss_pred eEeeeeEecC
Confidence 8887765543
No 70
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=98.57 E-value=4.1e-07 Score=99.39 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=36.8
Q ss_pred CchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhc
Q 003073 532 HKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM 577 (850)
Q Consensus 532 h~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~ 577 (850)
.+|++|+|++++ .++|++|+++|||.. .+|+.|.+++..+.
T Consensus 76 ~G~~~A~~~G~~----~A~gd~vv~~DaD~q-~~p~~i~~l~~~~~ 116 (325)
T PRK10714 76 YGQHSAIMAGFS----HVTGDLIITLDADLQ-NPPEEIPRLVAKAD 116 (325)
T ss_pred CCHHHHHHHHHH----hCCCCEEEEECCCCC-CCHHHHHHHHHHHH
Confidence 479999999998 579999999999999 68999999998875
No 71
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.36 E-value=2.9e-06 Score=76.69 Aligned_cols=49 Identities=24% Similarity=0.275 Sum_probs=43.1
Q ss_pred CCcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHH
Q 003073 348 LAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEAL 402 (850)
Q Consensus 348 lP~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L 402 (850)
.|.|+|+||||| |+ ..+.++|.|++.+.|+. .+|+|+|||+++.|.+.+
T Consensus 2 ~~~~siiip~~n---~~-~~l~~~l~s~~~q~~~~--~eiivvddgs~d~t~~~~ 50 (291)
T COG0463 2 MPKVSVVIPTYN---EE-EYLPEALESLLNQTYKD--FEIIVVDDGSTDGTTEIA 50 (291)
T ss_pred CccEEEEEeccc---hh-hhHHHHHHHHHhhhhcc--eEEEEEeCCCCCChHHHH
Confidence 578999999999 66 89999999999999995 779999999999666544
No 72
>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]
Probab=98.30 E-value=5.6e-06 Score=99.94 Aligned_cols=48 Identities=27% Similarity=0.371 Sum_probs=45.0
Q ss_pred ccchhHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHHhhh
Q 003073 775 SVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALG 824 (850)
Q Consensus 775 SITEDi~Tg~rLh~rGwRsvY~~p~~aaf~G~aP~tls~~lkQR~RWA~G 824 (850)
+..||=.+..++..+||+.-|+....+ ...+|+++..++.||+||..|
T Consensus 549 ~~geDR~L~~~llskgy~l~Y~a~s~a--~t~~Pe~~~efl~QrrRW~~s 596 (862)
T KOG2571|consen 549 SLGEDRWLCTLLLSKGYRLKYVAASDA--ETEAPESFLEFLNQRRRWLNS 596 (862)
T ss_pred ccchhHHHHHHHHhccceeeeeccccc--cccCcHhHHHHHHHhhhhccc
Confidence 589999999999999999999976555 899999999999999999999
No 73
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=98.21 E-value=9.5e-06 Score=83.19 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=36.8
Q ss_pred chhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhcCC
Q 003073 533 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDP 579 (850)
Q Consensus 533 ~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~DP 579 (850)
+.+.+.|.++. .+.+++|+++|||.+ ..|+++.+++.++.++
T Consensus 58 g~~~~~n~~~~----~a~~d~vl~lDaD~~-~~~~~~~~l~~~~~~~ 99 (229)
T cd02511 58 GFGAQRNFALE----LATNDWVLSLDADER-LTPELADEILALLATD 99 (229)
T ss_pred ChHHHHHHHHH----hCCCCEEEEEeCCcC-cCHHHHHHHHHHHhCC
Confidence 67899999998 578999999999999 5899999999988654
No 74
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=97.79 E-value=0.00078 Score=75.29 Aligned_cols=158 Identities=26% Similarity=0.378 Sum_probs=107.1
Q ss_pred CchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhcCCCCCcceEEE-eccccccCCCccccccchhHHH
Q 003073 532 HKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYV-QFPQRFDGIDRNDRYANRNTVF 610 (850)
Q Consensus 532 h~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~DP~~G~~v~~V-QtPQrF~~id~~Dryan~~~vF 610 (850)
+-|-.|+=-+.+ .++.++|+|.|.|-. -.||.|..+.--|+.++ ++|+| |+|-.++---
T Consensus 156 npKInN~mpgy~----~a~ydlvlisDsgI~-m~pdtildm~t~M~she---kmalvtq~py~~dr~G------------ 215 (431)
T KOG2547|consen 156 NPKINNMMPGYR----AAKYDLVLISDSGIF-MKPDTILDMATTMMSHE---KMALVTQTPYCKDRQG------------ 215 (431)
T ss_pred ChhhhccCHHHH----HhcCCEEEEecCCee-ecCchHHHHHHhhhccc---ceeeecCCceeecccc------------
Confidence 456656555556 378899999999999 58999999998887664 89988 7776554211
Q ss_pred HhhhhccccCCCCccccccchhhhhhhhcCCCCCCCCCCCCCCCcccccCCCccccCCcCccCCccccCCCCCCCCCccc
Q 003073 611 FDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIF 690 (850)
Q Consensus 611 fdi~~~glDgiqgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (850)
||.-+ .-+|.||. +-|--|-| +. ...-| .
T Consensus 216 f~atl-------e~~~fgTs--h~r~yl~~---n~------~~~~c--~------------------------------- 244 (431)
T KOG2547|consen 216 FDATL-------EQVYFGTS--HPRIYLSG---NV------LGFNC--S------------------------------- 244 (431)
T ss_pred chhhh-------hheeeccC--CceEEEcc---cc------ccccc--c-------------------------------
Confidence 22211 11455543 11222211 00 00001 0
Q ss_pred cchhhhhcccCCCCchhhHHHhhhhHHHHhhcchHHHHHhHhhhcCCCCCCcchhhHHHHhhhhccccccccCccccccc
Q 003073 691 SLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIG 770 (850)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~l~eai~v~sC~YE~~T~WG~evG 770 (850)
=|-|.-.+++++.|.||+...
T Consensus 245 ------------------------------tgms~~mrK~~ld~~ggi~~f----------------------------- 265 (431)
T KOG2547|consen 245 ------------------------------TGMSSMMRKEALDECGGISAF----------------------------- 265 (431)
T ss_pred ------------------------------ccHHHHHHHHHHHHhccHHHH-----------------------------
Confidence 056778889999999997531
Q ss_pred eeecccchhHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHHhh
Q 003073 771 WIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWAL 823 (850)
Q Consensus 771 W~y~SITEDi~Tg~rLh~rGwRsvY~~p~~aaf~G~aP~tls~~lkQR~RWA~ 823 (850)
.+.+.||...+=.+..+||++.+...... -..+-.++..+..|-.||..
T Consensus 266 --~~yLaedyFaaksllSRG~ksaist~pal--QnSas~~mssf~~Ri~rwvk 314 (431)
T KOG2547|consen 266 --GGYLAEDYFAAKSLLSRGWKSAISTHPAL--QNSASVTMSSFLDRIIRWVK 314 (431)
T ss_pred --HHHHHHHHHHHHHHHhhhhhhhhcccchh--hhhhhhHHHHHHHHHHHhhh
Confidence 24899999999999999999999875433 57778899999999999975
No 75
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=97.15 E-value=0.0018 Score=67.09 Aligned_cols=53 Identities=19% Similarity=0.311 Sum_probs=38.8
Q ss_pred cEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhcCC
Q 003073 517 RLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDP 579 (850)
Q Consensus 517 ~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~DP 579 (850)
++.-..|.+.-|. .-|.-+.+. .+.|+||+++|||.- -+|.|+-+.+....+-
T Consensus 64 ~i~l~pR~~klGL-----gtAy~hgl~----~a~g~fiviMDaDls-HhPk~ipe~i~lq~~~ 116 (238)
T KOG2978|consen 64 NILLKPRTKKLGL-----GTAYIHGLK----HATGDFIVIMDADLS-HHPKFIPEFIRLQKEG 116 (238)
T ss_pred cEEEEeccCcccc-----hHHHHhhhh----hccCCeEEEEeCccC-CCchhHHHHHHHhhcc
Confidence 4777788775542 223344555 589999999999999 7899998887776654
No 76
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=96.84 E-value=0.015 Score=64.96 Aligned_cols=90 Identities=17% Similarity=0.249 Sum_probs=57.1
Q ss_pred cCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHH---HHHHhhh-cCCCCCcceEEEeccccccCCCccccccch
Q 003073 531 HHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKAL---REAMCFM-MDPNLGKHVCYVQFPQRFDGIDRNDRYANR 606 (850)
Q Consensus 531 hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfL---r~tv~fF-~DP~~G~~v~~VQtPQrF~~id~~Dryan~ 606 (850)
.|+|. +||.++. ..++++++|||-|.+ +.|+|| .++++++ .|+ +|..|.+=-. .|....... +.
T Consensus 83 ~hyk~-aln~vF~----~~~~~~vIILEDDl~-~sPdFf~yf~~~l~~y~~D~----~v~~ISa~Nd-nG~~~~~~~-~~ 150 (334)
T cd02514 83 RHYKW-ALTQTFN----LFGYSFVIILEDDLD-IAPDFFSYFQATLPLLEEDP----SLWCISAWND-NGKEHFVDD-TP 150 (334)
T ss_pred HHHHH-HHHHHHH----hcCCCEEEEECCCCc-cCHhHHHHHHHHHHHHhcCC----CEEEEEeecc-CCcccccCC-Cc
Confidence 45666 7888876 357999999999999 689955 7888866 566 7888876210 000000000 01
Q ss_pred hHHHHhhhhccccCCCCccccccchhhhhhhhcCCCC
Q 003073 607 NTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEP 643 (850)
Q Consensus 607 ~~vFfdi~~~glDgiqgp~yvGTGcvfRR~ALyG~~p 643 (850)
..+| ..-++.|.|-+.+|++.-.++|
T Consensus 151 ~~ly-----------rs~ff~glGWml~r~~W~e~~~ 176 (334)
T cd02514 151 SLLY-----------RTDFFPGLGWMLTRKLWKELEP 176 (334)
T ss_pred ceEE-----------EecCCCchHHHHHHHHHHHhCC
Confidence 1111 1245668888888888877755
No 77
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.43 E-value=0.0013 Score=72.39 Aligned_cols=48 Identities=31% Similarity=0.946 Sum_probs=44.0
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccccc
Q 003073 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 69 (850)
Q Consensus 19 ~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Y 69 (850)
.|..|=+.+.++ ..-|.+| -|||.|||.||..-|.+=|+.||-|...|
T Consensus 16 ~cplcie~mdit--dknf~pc-~cgy~ic~fc~~~irq~lngrcpacrr~y 63 (480)
T COG5175 16 YCPLCIEPMDIT--DKNFFPC-PCGYQICQFCYNNIRQNLNGRCPACRRKY 63 (480)
T ss_pred cCcccccccccc--cCCcccC-CcccHHHHHHHHHHHhhccCCChHhhhhc
Confidence 599999998776 4469999 99999999999999999999999999999
No 78
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=96.21 E-value=0.18 Score=55.42 Aligned_cols=57 Identities=21% Similarity=0.234 Sum_probs=40.1
Q ss_pred cccEEEecCCCCCCC---HHHHHHHHHHHHcCCCCC---CCcEEEEecCCCchhhHHHHHhhHHhhhhhHhHHHhhC
Q 003073 350 AVDIFVSTVDPLKEP---PLVTANTVLSILAVDYPV---DKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYN 420 (850)
Q Consensus 350 ~VDVfVpt~nP~kEp---~~vv~~Tvls~lalDYP~---~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~WvPFCkk~~ 420 (850)
...|+||+|| |+ +.++..|+..+ .-.|-. =..+|+|+|||+.+.|.+...+ ||+|++
T Consensus 68 ~lsVIVpayn---E~~ri~~mldeav~~l-e~ry~~~~~F~~eiiVvddgs~d~T~~~a~k----------~s~K~~ 130 (323)
T KOG2977|consen 68 YLSVIVPAYN---EEGRIGAMLDEAVDYL-EKRYLSDKSFTYEIIVVDDGSTDSTVEVALK----------FSRKLG 130 (323)
T ss_pred eeEEEEecCC---cccchHHHHHHHHHHH-HHHhccCCCCceeEEEeCCCCchhHHHHHHH----------HHHHcC
Confidence 6899999999 65 44555665553 334443 3789999999999977765433 677765
No 79
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.67 E-value=0.012 Score=64.98 Aligned_cols=59 Identities=25% Similarity=0.525 Sum_probs=51.4
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccccccccCCCC
Q 003073 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSP 76 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr~kGs~ 76 (850)
..+.|.+|-.+..++.+=.++|. +|+-.+|+.|.+---..|...||+|++..++.+=.+
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~--~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~ 60 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVN--VCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRV 60 (309)
T ss_pred CCCCCCcCCCCCccCcccccccC--CCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccc
Confidence 45799999999999988888888 999999999998877889999999999998764333
No 80
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=94.34 E-value=0.032 Score=47.19 Aligned_cols=46 Identities=35% Similarity=0.889 Sum_probs=36.5
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCC--ccccc
Q 003073 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQ--CKTRY 69 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPq--Ckt~Y 69 (850)
.+.+|.+||+.|- +|++.|.|.+|+=|.=|+||+++ +.|-- |++.+
T Consensus 4 ~~~~C~~Cg~~~~---~~dDiVvCp~CgapyHR~C~~~~-----g~C~~~~c~~~~ 51 (54)
T PF14446_consen 4 EGCKCPVCGKKFK---DGDDIVVCPECGAPYHRDCWEKA-----GGCINYSCGTGF 51 (54)
T ss_pred cCccChhhCCccc---CCCCEEECCCCCCcccHHHHhhC-----CceEeccCCCCc
Confidence 3568999999874 47889999999999999999775 34544 66655
No 81
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.72 E-value=1.1 Score=51.38 Aligned_cols=48 Identities=17% Similarity=0.092 Sum_probs=39.7
Q ss_pred CCCCCcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCc
Q 003073 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAA 395 (850)
Q Consensus 345 ~~~lP~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~ 395 (850)
+.+||+++|+|.-.| |.-.++.+||.|++.-.=|.=--+|+++||-+.
T Consensus 151 pe~Lpt~SVviVFHN---EGws~LmRTVHSVi~RsP~~~l~eivlvDDfSd 198 (603)
T KOG3737|consen 151 PENLPTSSVVIVFHN---EGWSTLMRTVHSVIKRSPRKYLAEIVLVDDFSD 198 (603)
T ss_pred cccCCcceEEEEEec---CccHHHHHHHHHHHhcCcHHhhheEEEeccCCc
Confidence 568999999999999 999999999999987654433456888888654
No 82
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.47 E-value=0.48 Score=56.67 Aligned_cols=49 Identities=16% Similarity=0.095 Sum_probs=42.8
Q ss_pred CCCCCcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCch
Q 003073 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAM 396 (850)
Q Consensus 345 ~~~lP~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~ 396 (850)
...+|++.|+|+-+| |...++.+||.|++..-=|.--.+|+|+||.+..
T Consensus 138 ~~~Lp~~Svii~f~n---E~~s~llRtv~Svi~rtp~~lLkEIiLVdD~S~~ 186 (578)
T KOG3736|consen 138 SDKLPTTSVIIIFHN---EAWSTLLRTVHSVINRTPPYLLKEIILVDDFSDR 186 (578)
T ss_pred ccccCCCceEEEEec---CCCcchhheEEeehccCChhHeEEEEEeecCcch
Confidence 456999999999999 9999999999999887766556789999999865
No 83
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=88.54 E-value=0.48 Score=35.67 Aligned_cols=44 Identities=34% Similarity=0.804 Sum_probs=33.0
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCcccc
Q 003073 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 68 (850)
Q Consensus 19 ~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~ 68 (850)
.|.||.+.+ .+.++ ...|+-..|..|.+.-.+.++..||.|++.
T Consensus 1 ~C~iC~~~~-----~~~~~-~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEF-----REPVV-LLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhh-----hCceE-ecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 488998886 22322 235899999999976666678899999875
No 84
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=86.30 E-value=0.47 Score=47.02 Aligned_cols=52 Identities=29% Similarity=0.751 Sum_probs=38.9
Q ss_pred ccccccCCCcccCCCCCceeecCC-CCCCcchhhhHhHHh--cCCCCCCCccccccccC
Q 003073 18 QVCQICGDNVGKTVDGNPFVACDV-CAFPVCRPCYEYERK--DGNQSCPQCKTRYKKHK 73 (850)
Q Consensus 18 ~~C~iCgd~Vg~~~~Ge~FvAC~e-C~FpVCRpCYEyERk--eG~q~CPqCkt~Ykr~k 73 (850)
--|.||.|. ..-+-|.-=|| |||.||-.||--=.| .-.-+||-|||-||..+
T Consensus 81 YeCnIC~et----S~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 81 YECNICKET----SAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred eeccCcccc----cchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 369999874 22345666555 599999999976666 55689999999998653
No 85
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=77.58 E-value=2.6 Score=34.97 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=33.8
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCcccccc
Q 003073 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (850)
Q Consensus 19 ~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Yk 70 (850)
+|.||++-+ .+ +.+ ..||+-.||.|.+--.++ ++.||.|+.++.
T Consensus 3 ~Cpi~~~~~-~~----Pv~--~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~ 46 (63)
T smart00504 3 LCPISLEVM-KD----PVI--LPSGQTYERRAIEKWLLS-HGTDPVTGQPLT 46 (63)
T ss_pred CCcCCCCcC-CC----CEE--CCCCCEEeHHHHHHHHHH-CCCCCCCcCCCC
Confidence 699999863 22 333 378999999999877666 678999998773
No 86
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=76.41 E-value=1.4 Score=53.66 Aligned_cols=24 Identities=25% Similarity=0.598 Sum_probs=17.5
Q ss_pred chhhhHhHHhcCCCCCCCccccccc
Q 003073 47 CRPCYEYERKDGNQSCPQCKTRYKK 71 (850)
Q Consensus 47 CRpCYEyERkeG~q~CPqCkt~Ykr 71 (850)
|.-|- .+...|..-||+|+++-..
T Consensus 30 Cp~CG-~~~~~~~~fC~~CG~~~~~ 53 (645)
T PRK14559 30 CPQCG-TEVPVDEAHCPNCGAETGT 53 (645)
T ss_pred CCCCC-CCCCcccccccccCCcccc
Confidence 55554 4567888999999988653
No 87
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=76.36 E-value=3.2 Score=47.86 Aligned_cols=50 Identities=16% Similarity=0.074 Sum_probs=43.3
Q ss_pred CCCCcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhh
Q 003073 346 SQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLT 398 (850)
Q Consensus 346 ~~lP~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T 398 (850)
.++|+-+|+|+-.| |--..+.+||.|+|...=+.=-.+|+++||++.+.+
T Consensus 121 ~dlp~TsviITfHN---EARS~LLRTv~SvlnrsP~~li~EiILVDD~S~Dpe 170 (559)
T KOG3738|consen 121 VDLPPTSVIITFHN---EARSTLLRTVVSVLNRSPEHLIHEIILVDDFSQDPE 170 (559)
T ss_pred cCCCCceEEEEecc---HHHHHHHHHHHHHHcCChHHhhheeEEecCCCCChH
Confidence 47999999999999 999999999999999765433678999999999753
No 88
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=76.31 E-value=11 Score=33.73 Aligned_cols=35 Identities=29% Similarity=0.230 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHH
Q 003073 363 EPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEAL 402 (850)
Q Consensus 363 Ep~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L 402 (850)
|. ..+...|..-+++.+- ++||.|||+++.|.+.|
T Consensus 3 e~-~~L~~wl~~~~~lG~d----~i~i~d~~s~D~t~~~l 37 (97)
T PF13704_consen 3 EA-DYLPEWLAHHLALGVD----HIYIYDDGSTDGTREIL 37 (97)
T ss_pred hH-HHHHHHHHHHHHcCCC----EEEEEECCCCccHHHHH
Confidence 54 5677778888877664 59999999998665543
No 89
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=74.26 E-value=33 Score=37.97 Aligned_cols=57 Identities=16% Similarity=0.250 Sum_probs=41.3
Q ss_pred CCCCCcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEE-EEecCCC-chhhHHHHHhh
Q 003073 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSC-YVSDDGA-AMLTFEALSET 405 (850)
Q Consensus 345 ~~~lP~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~v-yV~DDG~-~~~T~e~L~Ea 405 (850)
..+-++|=|+.|--| +++ .+..=+..+..++||.+.+++ +++.|.. -+.|.+.|..+
T Consensus 21 ~~~~e~VLILtplrn--a~~--~l~~y~~~L~~L~YP~~lIsLgfLv~d~~e~d~t~~~l~~~ 79 (269)
T PF03452_consen 21 ARNKESVLILTPLRN--AAS--FLPDYFDNLLSLTYPHELISLGFLVSDSSEFDNTLKILEAA 79 (269)
T ss_pred cccCCeEEEEEecCC--chH--HHHHHHHHHHhCCCCchheEEEEEcCCCchhHHHHHHHHHH
Confidence 456788999999887 444 577778889999999998888 4555544 25566666554
No 90
>PHA02929 N1R/p28-like protein; Provisional
Probab=73.35 E-value=4.2 Score=43.97 Aligned_cols=55 Identities=24% Similarity=0.530 Sum_probs=39.9
Q ss_pred cCCccccccCCCcccCC-CCCceeecCCCCCCcchhhhHhHHhcCCCCCCCcccccc
Q 003073 15 VGGQVCQICGDNVGKTV-DGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (850)
Q Consensus 15 ~~~~~C~iCgd~Vg~~~-~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Yk 70 (850)
.....|.||.+.+.-.+ ....|..-..|+=.-|+.|.. +..+.++.||-|++++-
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~-~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECID-IWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHH-HHHhcCCCCCCCCCEee
Confidence 45679999999876443 112244444789999999995 44567889999999875
No 91
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=73.06 E-value=4.4 Score=42.61 Aligned_cols=49 Identities=22% Similarity=0.358 Sum_probs=39.1
Q ss_pred CchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhh-cCCCCCcceEEE
Q 003073 532 HKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKHVCYV 588 (850)
Q Consensus 532 h~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF-~DP~~G~~v~~V 588 (850)
..-|-++|++++ .++++|++.+.=|..+.+++||.+++..| .|| ++|+|
T Consensus 40 ~s~~~~yN~a~~----~a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~----~~G~i 89 (217)
T PF13712_consen 40 KSMAAAYNEAME----KAKAKYLVFLHQDVFIINENWLEDILEIFEEDP----NIGMI 89 (217)
T ss_dssp S-TTTHHHHHGG----G--SSEEEEEETTEE-SSHHHHHHHHHHHHH-T----TEEEE
T ss_pred cCHHHHHHHHHH----hCCCCEEEEEeCCeEEcchhHHHHHHHHHhhCC----CccEE
Confidence 457889999998 68999999999999999999999999999 898 66655
No 92
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=72.24 E-value=2.9 Score=46.19 Aligned_cols=53 Identities=23% Similarity=0.520 Sum_probs=44.4
Q ss_pred ccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCcccccccc
Q 003073 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (850)
Q Consensus 18 ~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr~ 72 (850)
+-|.+|--++-++.+ +|.--|+|+.+.|-.|..-=-.-|...||.|.+.-+..
T Consensus 1 ~~Cp~CKt~~Y~np~--lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 1 QACPKCKTDRYLNPD--LKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred CCCcccccceecCcc--ceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 358899888888765 66777799999999999776778899999999998654
No 93
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=70.38 E-value=6.1 Score=41.56 Aligned_cols=63 Identities=32% Similarity=0.637 Sum_probs=41.0
Q ss_pred CCCCCCCCCc-cccccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHH---------------hcCCCCCCC
Q 003073 1 MESEGETGVK-SIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYER---------------KDGNQSCPQ 64 (850)
Q Consensus 1 ~~~~~~~~~k-~~~~~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyER---------------keG~q~CPq 64 (850)
|+-+-++..+ -+...+.-.|.||-|.+- ++.+ -.|+--.|++|-+.=. +.+...||-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~CpICld~~~-----dPVv--T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPv 73 (193)
T PLN03208 1 MEIEKDEDDTTLVDSGGDFDCNICLDQVR-----DPVV--TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPV 73 (193)
T ss_pred CCcccccccceeccCCCccCCccCCCcCC-----CcEE--cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCC
Confidence 4555444443 344445669999998752 3334 2689999999996321 113468999
Q ss_pred cccccc
Q 003073 65 CKTRYK 70 (850)
Q Consensus 65 Ckt~Yk 70 (850)
|+++..
T Consensus 74 CR~~Is 79 (193)
T PLN03208 74 CKSDVS 79 (193)
T ss_pred CCCcCC
Confidence 999884
No 94
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=70.21 E-value=2.9 Score=34.05 Aligned_cols=27 Identities=22% Similarity=0.657 Sum_probs=21.4
Q ss_pred ccccccCCCcccCCCCCceeecCCCCCCc
Q 003073 18 QVCQICGDNVGKTVDGNPFVACDVCAFPV 46 (850)
Q Consensus 18 ~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpV 46 (850)
-+|.-||.++.+... .-+-|.+|++.|
T Consensus 3 Y~C~~Cg~~~~~~~~--~~irC~~CG~rI 29 (44)
T smart00659 3 YICGECGRENEIKSK--DVVRCRECGYRI 29 (44)
T ss_pred EECCCCCCEeecCCC--CceECCCCCceE
Confidence 379999999888743 348899999876
No 95
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=70.13 E-value=3.2 Score=32.70 Aligned_cols=43 Identities=33% Similarity=0.697 Sum_probs=33.1
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCcc
Q 003073 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCK 66 (850)
Q Consensus 19 ~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCk 66 (850)
.|.||-+++.. ++..+... |+=-.|+.|..-=.+. ++.||-|+
T Consensus 2 ~C~IC~~~~~~---~~~~~~l~-C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFED---GEKVVKLP-CGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHT---TSCEEEET-TSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcC---CCeEEEcc-CCCeeCHHHHHHHHHh-CCcCCccC
Confidence 59999999755 67777775 9999999998644444 57999995
No 96
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=69.91 E-value=2.1 Score=36.59 Aligned_cols=47 Identities=32% Similarity=0.740 Sum_probs=33.6
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCcccccccc
Q 003073 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr~ 72 (850)
.-|.|-.|+..-.. ..+.+ |+--||+-|+.-||-.| ||=|.+|+...
T Consensus 6 ~~~~~~~~~~~~~~----~~~~p---CgH~I~~~~f~~~rYng---CPfC~~~~~~~ 52 (55)
T PF14447_consen 6 PEQPCVFCGFVGTK----GTVLP---CGHLICDNCFPGERYNG---CPFCGTPFEFD 52 (55)
T ss_pred cceeEEEccccccc----ccccc---ccceeeccccChhhccC---CCCCCCcccCC
Confidence 34566667665221 12344 59999999999999887 99999999653
No 97
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=68.33 E-value=1.3 Score=38.57 Aligned_cols=25 Identities=28% Similarity=0.577 Sum_probs=21.6
Q ss_pred hhhhHhHHhcCCCCCCCcccccccc
Q 003073 48 RPCYEYERKDGNQSCPQCKTRYKKH 72 (850)
Q Consensus 48 RpCYEyERkeG~q~CPqCkt~Ykr~ 72 (850)
+-|+|++..||.=.||.|+..|--.
T Consensus 42 ~~l~~~~i~eg~L~Cp~c~r~YPI~ 66 (68)
T PF03966_consen 42 HVLLEVEIVEGELICPECGREYPIR 66 (68)
T ss_dssp EHHCTEETTTTEEEETTTTEEEEEE
T ss_pred hhhhcccccCCEEEcCCCCCEEeCC
Confidence 5688899999999999999999543
No 98
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=68.23 E-value=3.9 Score=31.38 Aligned_cols=26 Identities=23% Similarity=0.672 Sum_probs=19.0
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCc
Q 003073 19 VCQICGDNVGKTVDGNPFVACDVCAFPV 46 (850)
Q Consensus 19 ~C~iCgd~Vg~~~~Ge~FvAC~eC~FpV 46 (850)
+|.-||.+|.+... + -|-|.+|++-|
T Consensus 2 ~C~~Cg~~~~~~~~-~-~irC~~CG~RI 27 (32)
T PF03604_consen 2 ICGECGAEVELKPG-D-PIRCPECGHRI 27 (32)
T ss_dssp BESSSSSSE-BSTS-S-TSSBSSSS-SE
T ss_pred CCCcCCCeeEcCCC-C-cEECCcCCCeE
Confidence 68999999997653 3 37999999875
No 99
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=67.09 E-value=1.3 Score=42.49 Aligned_cols=48 Identities=31% Similarity=0.723 Sum_probs=35.5
Q ss_pred cCCccccccCCCcccCC-CCCceeecCCCCCCcchhhhHhHHhcCCCCCCCc
Q 003073 15 VGGQVCQICGDNVGKTV-DGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQC 65 (850)
Q Consensus 15 ~~~~~C~iCgd~Vg~~~-~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqC 65 (850)
.+...|.+|+...|+-. .| ..|..|...||+.|-.|-.+++-=.|-=|
T Consensus 52 ~~~~~C~~C~~~fg~l~~~~---~~C~~C~~~VC~~C~~~~~~~~~WlC~vC 100 (118)
T PF02318_consen 52 YGERHCARCGKPFGFLFNRG---RVCVDCKHRVCKKCGVYSKKEPIWLCKVC 100 (118)
T ss_dssp HCCSB-TTTS-BCSCTSTTC---EEETTTTEEEETTSEEETSSSCCEEEHHH
T ss_pred cCCcchhhhCCcccccCCCC---CcCCcCCccccCccCCcCCCCCCEEChhh
Confidence 36679999999988763 35 89999999999999988555555556555
No 100
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.96 E-value=3.7 Score=44.08 Aligned_cols=47 Identities=34% Similarity=0.834 Sum_probs=37.4
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhH---HhcCCCCCCCcccccc
Q 003073 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE---RKDGNQSCPQCKTRYK 70 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyE---RkeG~q~CPqCkt~Yk 70 (850)
+---|.||=|.+ =|+.|-| ||---|.||. |- ....++.||=||..-.
T Consensus 46 ~~FdCNICLd~a-----kdPVvTl--CGHLFCWpCl-yqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 46 GFFDCNICLDLA-----KDPVVTL--CGHLFCWPCL-YQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred Cceeeeeecccc-----CCCEEee--cccceehHHH-HHHHhhcCCCeeCCccccccc
Confidence 334799996653 4578888 9999999998 76 5688999999998653
No 101
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=65.23 E-value=5.1 Score=45.06 Aligned_cols=52 Identities=29% Similarity=0.860 Sum_probs=43.3
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCcccccccc
Q 003073 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (850)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr~ 72 (850)
...|.||++.. +.+--.|++| -|+|-+|-+|- --.-+++..||.|.++|.+.
T Consensus 249 ~~s~p~~~~~~--~~~d~~~lP~-~~~~~~~l~~~-~t~~~~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 249 PPSCPICYEDL--DLTDSNFLPC-PCGFRLCLFCH-KTISDGDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCCcc--cccccccccc-cccccchhhhh-hcccccCCCCCccCCccccC
Confidence 46899999985 4455679999 99999999998 34568999999999999764
No 102
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=63.39 E-value=6.9 Score=28.13 Aligned_cols=39 Identities=38% Similarity=0.894 Sum_probs=27.3
Q ss_pred ccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCc
Q 003073 20 CQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQC 65 (850)
Q Consensus 20 C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqC 65 (850)
|.||.+. ...+.+ -.|+.-.|..|.+.-.+.++..||.|
T Consensus 1 C~iC~~~-----~~~~~~--~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE-----LKDPVV--LPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccC-----CCCcEE--ecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 7788777 112222 25888899999976666677889987
No 103
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=60.70 E-value=7.2 Score=43.77 Aligned_cols=64 Identities=31% Similarity=0.753 Sum_probs=46.8
Q ss_pred ccccCCccccc--cCCCcccCCCCCceeecCC-CCCCcchhhhH-----------------------hH-----------
Q 003073 12 IKNVGGQVCQI--CGDNVGKTVDGNPFVACDV-CAFPVCRPCYE-----------------------YE----------- 54 (850)
Q Consensus 12 ~~~~~~~~C~i--Cgd~Vg~~~~Ge~FvAC~e-C~FpVCRpCYE-----------------------yE----------- 54 (850)
+.+++|-.|.- ||..+-...| .--|.|.. |+|-.||.|.| +|
T Consensus 310 vlq~gGVlCP~pgCG~gll~EPD-~rkvtC~~gCgf~FCR~C~e~yh~geC~~~~~as~t~tc~y~vde~~a~~arwd~a 388 (446)
T KOG0006|consen 310 VLQMGGVLCPRPGCGAGLLPEPD-QRKVTCEGGCGFAFCRECKEAYHEGECSAVFEASGTTTCAYRVDERAAEQARWDAA 388 (446)
T ss_pred eeecCCEecCCCCCCcccccCCC-CCcccCCCCchhHhHHHHHhhhccccceeeeccccccceeeecChhhhhhhhhhhh
Confidence 45677889986 8877655442 23588877 99999999998 23
Q ss_pred ----HhcCCCCCCCccccccccCCCC
Q 003073 55 ----RKDGNQSCPQCKTRYKKHKGSP 76 (850)
Q Consensus 55 ----RkeG~q~CPqCkt~Ykr~kGs~ 76 (850)
.|-.++-||.|.++-.|.-|+.
T Consensus 389 s~~TIk~tTkpCPkChvptErnGGCm 414 (446)
T KOG0006|consen 389 SKETIKKTTKPCPKCHVPTERNGGCM 414 (446)
T ss_pred hhhhhhhccCCCCCccCccccCCceE
Confidence 2335677999999888876653
No 104
>PHA02862 5L protein; Provisional
Probab=60.01 E-value=5.5 Score=40.28 Aligned_cols=49 Identities=27% Similarity=0.533 Sum_probs=31.9
Q ss_pred CccccccCCCcccCCCCCceeecCCC---CCCcchhhhHh-HHhcCCCCCCCccccccc
Q 003073 17 GQVCQICGDNVGKTVDGNPFVACDVC---AFPVCRPCYEY-ERKDGNQSCPQCKTRYKK 71 (850)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FvAC~eC---~FpVCRpCYEy-ERkeG~q~CPqCkt~Ykr 71 (850)
+.+|-||-++ +++..-+| .| .==|=+.|.+- -...++..|++||++|.-
T Consensus 2 ~diCWIC~~~-----~~e~~~PC-~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDV-----CDERNNFC-GCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCc-----CCCCcccc-cccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 4689999876 23445677 44 11233556532 245788999999999963
No 105
>PRK00420 hypothetical protein; Validated
Probab=60.00 E-value=4.1 Score=39.46 Aligned_cols=29 Identities=38% Similarity=0.757 Sum_probs=23.1
Q ss_pred eecCCCCCCcchhhhHhHHhcCCCCCCCccccccc
Q 003073 37 VACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (850)
Q Consensus 37 vAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr 71 (850)
-.|..|++|.= +-++|.-.||.|+..+.-
T Consensus 24 ~~CP~Cg~pLf------~lk~g~~~Cp~Cg~~~~v 52 (112)
T PRK00420 24 KHCPVCGLPLF------ELKDGEVVCPVHGKVYIV 52 (112)
T ss_pred CCCCCCCCcce------ecCCCceECCCCCCeeee
Confidence 46888888863 338999999999998864
No 106
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=59.72 E-value=5.9 Score=44.31 Aligned_cols=44 Identities=34% Similarity=0.844 Sum_probs=36.9
Q ss_pred CCCCCceeecCCCCCCc--------ch--hhhHhHHhcCCCCCCCccccccccC
Q 003073 30 TVDGNPFVACDVCAFPV--------CR--PCYEYERKDGNQSCPQCKTRYKKHK 73 (850)
Q Consensus 30 ~~~Ge~FvAC~eC~FpV--------CR--pCYEyERkeG~q~CPqCkt~Ykr~k 73 (850)
..+|...--|.-|+||| |+ .|||-.|.|-.+.||.|-.|-.|..
T Consensus 84 k~l~p~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~dK~Cp~C~d~VqrIe 137 (389)
T KOG2932|consen 84 KQLGPRVHFCDRCDFPIAIYGRMIPCKHVFCLECARSDSDKICPLCDDRVQRIE 137 (389)
T ss_pred cccCcceEeecccCCcceeeecccccchhhhhhhhhcCccccCcCcccHHHHHH
Confidence 34566677899999998 54 6999999999999999999998763
No 107
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=58.08 E-value=8.4 Score=39.50 Aligned_cols=52 Identities=27% Similarity=0.500 Sum_probs=34.8
Q ss_pred cCCccccccCCCcccCCCCCceeecCCCCC---CcchhhhHhH-HhcCCCCCCCcccccccc
Q 003073 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAF---PVCRPCYEYE-RKDGNQSCPQCKTRYKKH 72 (850)
Q Consensus 15 ~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~F---pVCRpCYEyE-RkeG~q~CPqCkt~Ykr~ 72 (850)
..+..|.||-++- ++..-+| .|.= -|=+.|-+-= ...++..|++|+++|.-.
T Consensus 6 ~~~~~CRIC~~~~-----~~~~~PC-~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 6 LMDKCCWICKDEY-----DVVTNYC-NCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCCeeEecCCCC-----CCccCCc-ccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 3456999997662 2344578 5532 2346777544 446789999999999754
No 108
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF14471 DUF4428: Domain of unknown function (DUF4428)
Probab=56.70 E-value=6.2 Score=33.06 Aligned_cols=28 Identities=25% Similarity=0.743 Sum_probs=17.8
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhhH
Q 003073 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYE 52 (850)
Q Consensus 19 ~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYE 52 (850)
.|.|||++||+... .-+ +=+| ||..|++
T Consensus 1 ~C~iCg~kigl~~~--~k~---~DG~-iC~~C~~ 28 (51)
T PF14471_consen 1 KCAICGKKIGLFKR--FKI---KDGY-ICKDCLK 28 (51)
T ss_pred CCCccccccccccc--eec---cCcc-chHHHHH
Confidence 59999999999642 111 1123 6777774
No 110
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=56.43 E-value=32 Score=39.58 Aligned_cols=43 Identities=19% Similarity=0.205 Sum_probs=28.6
Q ss_pred cCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhh
Q 003073 531 HHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM 576 (850)
Q Consensus 531 hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF 576 (850)
.++|+-.|=-.+-... ....+||-++|||.++| -...+-+--|
T Consensus 142 R~GKgEGMiiG~lLAk-~~g~~YVGFiDADNyiP--GaV~EYvk~y 184 (393)
T PRK14503 142 RSGKGEGMIIGLLLAK-ALGARYVGFVDADNYIP--GAVNEYVKIY 184 (393)
T ss_pred ecCcchHHHHHHHHHH-HhCCCeEeEeecccCCC--chHHHHHHHH
Confidence 3578877765433222 34779999999999974 5666655533
No 111
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=55.40 E-value=4.1 Score=45.60 Aligned_cols=36 Identities=28% Similarity=0.806 Sum_probs=27.3
Q ss_pred cccccCCCcccCCCCCceeecCCC-CCCcchhhhHhHHhcC
Q 003073 19 VCQICGDNVGKTVDGNPFVACDVC-AFPVCRPCYEYERKDG 58 (850)
Q Consensus 19 ~C~iCgd~Vg~~~~Ge~FvAC~eC-~FpVCRpCYEyERkeG 58 (850)
.|.+|--++- .-.|+-|+|| +|-.|-||+---..-|
T Consensus 7 hCdvC~~d~T----~~~~i~C~eC~~~DLC~pCF~~g~~tg 43 (432)
T COG5114 7 HCDVCFLDMT----DLTFIKCNECPAVDLCLPCFVNGIETG 43 (432)
T ss_pred eehHHHHhhh----cceeeeeecccccceehhhhhcccccc
Confidence 6888876543 4479999999 9999999995444344
No 112
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=53.11 E-value=13 Score=28.66 Aligned_cols=39 Identities=36% Similarity=0.907 Sum_probs=27.5
Q ss_pred ccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCc
Q 003073 20 CQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQC 65 (850)
Q Consensus 20 C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqC 65 (850)
|.||-+...- +++.- .||--.|+.|.+--.+. +..||.|
T Consensus 1 C~iC~~~~~~-----~~~~~-~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD-----PVVVT-PCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS-----EEEEC-TTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccC-----cCEEC-CCCCchhHHHHHHHHHC-cCCCcCC
Confidence 7788665322 44443 78999999999776666 7999987
No 113
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=52.93 E-value=14 Score=29.70 Aligned_cols=38 Identities=26% Similarity=0.836 Sum_probs=28.5
Q ss_pred CCccccccCCCcccCCCCCceeecCCC-CCCcchhhhHhHHhcC
Q 003073 16 GGQVCQICGDNVGKTVDGNPFVACDVC-AFPVCRPCYEYERKDG 58 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FvAC~eC-~FpVCRpCYEyERkeG 58 (850)
....|.+|+..| .|.-| -|.+| .|-+|..||..-+..+
T Consensus 3 ~~~~C~~C~~~i----~g~ry-~C~~C~d~dlC~~Cf~~~~~~~ 41 (44)
T smart00291 3 HSYSCDTCGKPI----VGVRY-HCLVCPDYDLCQSCFAKGSAGG 41 (44)
T ss_pred CCcCCCCCCCCC----cCCEE-ECCCCCCccchHHHHhCcCcCC
Confidence 345799999853 36666 79999 9999999997554443
No 114
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=52.44 E-value=11 Score=28.95 Aligned_cols=40 Identities=30% Similarity=0.728 Sum_probs=30.1
Q ss_pred ccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHh-cCCCCCCCc
Q 003073 20 CQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERK-DGNQSCPQC 65 (850)
Q Consensus 20 C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERk-eG~q~CPqC 65 (850)
|.||.+...... --..|+=..|+.|..--.+ .+...||.|
T Consensus 1 C~iC~~~~~~~~------~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV------ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE------EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC------EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 778887644332 3347899999999987766 788899988
No 115
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=51.58 E-value=15 Score=29.80 Aligned_cols=46 Identities=26% Similarity=0.627 Sum_probs=32.4
Q ss_pred ccccccCCCcccCCCCCceeecCCCCCC-cchhhhHhHHhcCCCCCCCccccccc
Q 003073 18 QVCQICGDNVGKTVDGNPFVACDVCAFP-VCRPCYEYERKDGNQSCPQCKTRYKK 71 (850)
Q Consensus 18 ~~C~iCgd~Vg~~~~Ge~FvAC~eC~Fp-VCRpCYEyERkeG~q~CPqCkt~Ykr 71 (850)
..|.||.+..-- -.|. .|+=- +|..|++--.+ ....||-|+++.++
T Consensus 3 ~~C~iC~~~~~~----~~~~---pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 3 EECPICFENPRD----VVLL---PCGHLCFCEECAERLLK-RKKKCPICRQPIES 49 (50)
T ss_dssp SB-TTTSSSBSS----EEEE---TTCEEEEEHHHHHHHHH-TTSBBTTTTBB-SE
T ss_pred CCCccCCccCCc----eEEe---CCCChHHHHHHhHHhcc-cCCCCCcCChhhcC
Confidence 369999987321 1344 46778 99999966666 78999999998753
No 116
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=49.85 E-value=11 Score=30.39 Aligned_cols=28 Identities=29% Similarity=0.640 Sum_probs=18.2
Q ss_pred ccccccCCCcccCCCCCceeecCCCCCCc
Q 003073 18 QVCQICGDNVGKTVDGNPFVACDVCAFPV 46 (850)
Q Consensus 18 ~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpV 46 (850)
-.|+-||..+.++++.. -+-|..|+.++
T Consensus 4 y~C~~CG~~~~~~~~~~-~~~Cp~CG~~~ 31 (46)
T PRK00398 4 YKCARCGREVELDEYGT-GVRCPYCGYRI 31 (46)
T ss_pred EECCCCCCEEEECCCCC-ceECCCCCCeE
Confidence 36777888777766554 35666666654
No 117
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=48.99 E-value=14 Score=43.02 Aligned_cols=30 Identities=20% Similarity=0.563 Sum_probs=22.4
Q ss_pred CceeecCCCCCCcchhhhHhHHhcCCCCCCCcccccccc
Q 003073 34 NPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (850)
Q Consensus 34 e~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr~ 72 (850)
+.-++|++|+.-+ ..+...||+|++.-.|.
T Consensus 219 ~~l~~C~~Cd~l~---------~~~~a~CpRC~~~L~~~ 248 (419)
T PRK15103 219 QGLRSCSCCTAIL---------PADQPVCPRCHTKGYVR 248 (419)
T ss_pred cCCCcCCCCCCCC---------CCCCCCCCCCCCcCcCC
Confidence 3467899999964 23445899999988655
No 118
>PRK04023 DNA polymerase II large subunit; Validated
Probab=48.69 E-value=12 Score=47.60 Aligned_cols=45 Identities=22% Similarity=0.692 Sum_probs=32.3
Q ss_pred cCCccccccCCCcccCCCCCceeecCCCCCC-----cchhhhHhHHhcC-CCCCCCcccccc
Q 003073 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFP-----VCRPCYEYERKDG-NQSCPQCKTRYK 70 (850)
Q Consensus 15 ~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~Fp-----VCRpCYEyERkeG-~q~CPqCkt~Yk 70 (850)
.....|.-||... ....|.+|+=. .|..| ++.+ .-.||.|++.-.
T Consensus 624 Vg~RfCpsCG~~t-------~~frCP~CG~~Te~i~fCP~C----G~~~~~y~CPKCG~El~ 674 (1121)
T PRK04023 624 IGRRKCPSCGKET-------FYRRCPFCGTHTEPVYRCPRC----GIEVEEDECEKCGREPT 674 (1121)
T ss_pred ccCccCCCCCCcC-------CcccCCCCCCCCCcceeCccc----cCcCCCCcCCCCCCCCC
Confidence 4556899999883 55689999843 67777 3433 367999997654
No 119
>PRK07220 DNA topoisomerase I; Validated
Probab=48.13 E-value=10 Score=46.99 Aligned_cols=48 Identities=19% Similarity=0.587 Sum_probs=32.7
Q ss_pred ccccccCCCcccC--CCCCceeecCCCCCCcchhhhHhHHh----cCCCCCCCccc
Q 003073 18 QVCQICGDNVGKT--VDGNPFVACDVCAFPVCRPCYEYERK----DGNQSCPQCKT 67 (850)
Q Consensus 18 ~~C~iCgd~Vg~~--~~Ge~FvAC~eC~FpVCRpCYEyERk----eG~q~CPqCkt 67 (850)
..|..||.++.+. ..|..|+.|. +||-|+--+-..++ .-+..||.|+.
T Consensus 590 ~~CP~Cg~~l~~r~~r~g~~f~gCs--~yp~C~~~~~l~~~g~~~~~~~~Cp~Cg~ 643 (740)
T PRK07220 590 GKCPLCGSDLMVRRSKRGSRFIGCE--GYPECTFSLPLPKSGQIIVTDKVCEAHGL 643 (740)
T ss_pred cccccCCCeeeEEecCCCceEEEcC--CCCCCCceeeCCCCCccccCCCCCCCCCC
Confidence 4899999875542 3466799996 57888755543321 12478999985
No 120
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=46.83 E-value=12 Score=43.24 Aligned_cols=30 Identities=20% Similarity=0.562 Sum_probs=21.7
Q ss_pred ceeecCCCCCCcchhhhHhHHhcCCCCCCCcccccccc
Q 003073 35 PFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (850)
Q Consensus 35 ~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr~ 72 (850)
.-++|++|+..+ . ......||+|++.--|.
T Consensus 214 ~~~~C~~Cd~~~-~-------~~~~a~CpRC~~~L~~~ 243 (403)
T TIGR00155 214 KLRSCSACHTTI-L-------PAQEPVCPRCSTPLYVR 243 (403)
T ss_pred CCCcCCCCCCcc-C-------CCCCcCCcCCCCcccCC
Confidence 367899999966 1 23346899999987544
No 121
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=46.51 E-value=17 Score=29.37 Aligned_cols=31 Identities=32% Similarity=0.806 Sum_probs=25.2
Q ss_pred cccccCCCcccCCCCCceeecCCCC-CCcchhhhHhH
Q 003073 19 VCQICGDNVGKTVDGNPFVACDVCA-FPVCRPCYEYE 54 (850)
Q Consensus 19 ~C~iCgd~Vg~~~~Ge~FvAC~eC~-FpVCRpCYEyE 54 (850)
.|.+|+..| . | ....|.+|. |-+|..||...
T Consensus 2 ~C~~C~~~i--~--g-~r~~C~~C~d~dLC~~Cf~~~ 33 (46)
T cd02249 2 SCDGCLKPI--V--G-VRYHCLVCEDFDLCSSCYAKG 33 (46)
T ss_pred CCcCCCCCC--c--C-CEEECCCCCCCcCHHHHHCcC
Confidence 589999853 2 5 789999997 99999999643
No 122
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=46.05 E-value=83 Score=36.25 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=28.4
Q ss_pred cCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhh
Q 003073 531 HHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM 576 (850)
Q Consensus 531 hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF 576 (850)
.++|+-.|=-.+-... ....+||-++|||.++| ....+-+--|
T Consensus 141 R~GKgEGMiiG~lLAk-~~g~~YVGFiDaDNyiP--GaV~EYvk~y 183 (381)
T TIGR02460 141 RSGKGEGMLLGLLLAK-AIGAEYVGFVDADNYFP--GAVNEYVKIY 183 (381)
T ss_pred ecCcchHHHHHHHHHH-HhCCceEeEeecccCCC--chHHHHHHHH
Confidence 4578877765433222 34779999999999975 5666655433
No 123
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=45.35 E-value=19 Score=29.67 Aligned_cols=30 Identities=27% Similarity=0.938 Sum_probs=25.4
Q ss_pred cccccCCCcccCCCCCceeecCCC-CCCcchhhhH
Q 003073 19 VCQICGDNVGKTVDGNPFVACDVC-AFPVCRPCYE 52 (850)
Q Consensus 19 ~C~iCgd~Vg~~~~Ge~FvAC~eC-~FpVCRpCYE 52 (850)
.|..|+.++. +...+.|.+| .|-+|-.||.
T Consensus 2 ~Cd~C~~~~~----~g~r~~C~~C~d~dLC~~Cf~ 32 (49)
T cd02335 2 HCDYCSKDIT----GTIRIKCAECPDFDLCLECFS 32 (49)
T ss_pred CCCCcCCCCC----CCcEEECCCCCCcchhHHhhh
Confidence 5889987653 4589999999 9999999996
No 124
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=44.97 E-value=24 Score=41.36 Aligned_cols=51 Identities=24% Similarity=0.289 Sum_probs=30.9
Q ss_pred CCCCCcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCC-CCcEEEEecCCCchhhHH
Q 003073 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPV-DKVSCYVSDDGAAMLTFE 400 (850)
Q Consensus 345 ~~~lP~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~-~kl~vyV~DDG~~~~T~e 400 (850)
....|.+-|+|-+|| -| .-+.+||.+++... |. +++.|+|+.||....|.+
T Consensus 89 ~~~~~~~pVlV~AcN---Rp-~yl~r~L~sLl~~r-p~~~~fpIiVSQDg~~~~~~~ 140 (434)
T PF03071_consen 89 KNKEPVIPVLVFACN---RP-DYLRRTLDSLLKYR-PSAEKFPIIVSQDGDDEEVAE 140 (434)
T ss_dssp --------EEEEESS----T-T-HHHHHHHHHHH--S-TTTS-EEEEE-TT-HHHHH
T ss_pred ccCCCcceEEEEecC---Cc-HHHHHHHHHHHHcC-CCCCCccEEEEecCCcHHHHH
Confidence 345678889999998 54 78999999999988 65 688899999999875544
No 125
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=43.77 E-value=10 Score=44.13 Aligned_cols=50 Identities=22% Similarity=0.604 Sum_probs=35.3
Q ss_pred CccccccCCCcccCCCCCceeecCCCC-CCcchhhhHhHHhcCCCCCCCccccccccC
Q 003073 17 GQVCQICGDNVGKTVDGNPFVACDVCA-FPVCRPCYEYERKDGNQSCPQCKTRYKKHK 73 (850)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FvAC~eC~-FpVCRpCYEyERkeG~q~CPqCkt~Ykr~k 73 (850)
...|..|..+| +|-.+|-|.||. |-+|-+|+.---.-|.. ||.-+|+-.+
T Consensus 14 ky~C~~C~~di----t~~i~ikCaeCp~fdLCl~CFs~GaE~~~H---~~~H~Yrim~ 64 (438)
T KOG0457|consen 14 KYNCDYCSLDI----TGLIRIKCAECPDFDLCLQCFSVGAETGKH---QNDHPYRIMD 64 (438)
T ss_pred CCCCccHhHHh----ccceEEEeecCCCcchhHHHHhcccccCCC---CCCCCceeec
Confidence 34899999875 477899999998 99999999433322322 4556676544
No 126
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=43.20 E-value=10 Score=42.73 Aligned_cols=30 Identities=27% Similarity=0.924 Sum_probs=25.4
Q ss_pred CCCcchhhhHhHHhcCC--CCCCCcccccccc
Q 003073 43 AFPVCRPCYEYERKDGN--QSCPQCKTRYKKH 72 (850)
Q Consensus 43 ~FpVCRpCYEyERkeG~--q~CPqCkt~Ykr~ 72 (850)
+|-||+.|+-.-+-+-+ +-||-|.++|+..
T Consensus 1 ~yqIc~~cwh~i~~~~~~~grcpncr~ky~e~ 32 (327)
T KOG2068|consen 1 GYQICDSCWHHIATSAEKKGRCPNCRTKYKEE 32 (327)
T ss_pred CceeeHHHHhccccccccccCCccccCccchh
Confidence 57899999977776666 9999999999754
No 127
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=43.17 E-value=25 Score=39.30 Aligned_cols=41 Identities=12% Similarity=0.138 Sum_probs=29.4
Q ss_pred cCCCCEEEEecCCCCCCcHHHHHHHHhhhcCCCCCcceEEEe
Q 003073 548 LTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQ 589 (850)
Q Consensus 548 lt~ge~I~ilDAD~~~~~pdfLr~tv~fF~DP~~G~~v~~VQ 589 (850)
.+..+||+++|+|++ |.+++-..+..+...-....+.+||=
T Consensus 125 ~a~T~~v~~~DvD~~-ps~~l~~~l~~~~~~~~~~~~~a~Vv 165 (317)
T PF13896_consen 125 GARTDYVFLLDVDFL-PSPGLYEKLLRFARRNIDKSKTAFVV 165 (317)
T ss_pred hcCcceEEEecceee-eCcchHHHHHHHhhhhccCCceEEEE
Confidence 577899999999999 67787777777653222334677763
No 128
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=42.25 E-value=18 Score=35.45 Aligned_cols=50 Identities=34% Similarity=0.759 Sum_probs=36.9
Q ss_pred ccCCccccccCCCccc--CCCCCceeecCCCCCCcchhhhHh---HHhcCCCCCCCccc
Q 003073 14 NVGGQVCQICGDNVGK--TVDGNPFVACDVCAFPVCRPCYEY---ERKDGNQSCPQCKT 67 (850)
Q Consensus 14 ~~~~~~C~iCgd~Vg~--~~~Ge~FvAC~eC~FpVCRpCYEy---ERkeG~q~CPqCkt 67 (850)
....+.|..||....+ ...| -|+.|. .||.|+- |+- ...+....||+|+.
T Consensus 14 ~~~~~~Cp~Cg~~m~~~~~~~g-~f~gCs--~yP~C~~-~~~~~~~~~~~~~~Cp~C~~ 68 (140)
T COG0551 14 LKTGQICPKCGKNMVKKFGKYG-IFLGCS--NYPKCDY-YEPEKAIAEKTGVKCPKCGK 68 (140)
T ss_pred cccCccCCcCCCeeEEEEccCC-eEEEeC--CCCCCCC-CcccccccccCceeCCCCCC
Confidence 3568899999999655 4568 999994 6999996 221 12255689999996
No 129
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=41.64 E-value=16 Score=26.91 Aligned_cols=28 Identities=32% Similarity=0.920 Sum_probs=12.0
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhh
Q 003073 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPC 50 (850)
Q Consensus 19 ~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpC 50 (850)
.|.+|+..+. |..+--|.+|.|-+...|
T Consensus 2 ~C~~C~~~~~----~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPID----GGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS--------S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCC----CCceEECccCCCccChhc
Confidence 5899998864 368899999999998877
No 130
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=41.10 E-value=20 Score=30.79 Aligned_cols=33 Identities=33% Similarity=0.708 Sum_probs=23.8
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchh
Q 003073 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRP 49 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRp 49 (850)
.+|+|..||..+..+..+..| -|..|+|-.=|+
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~-~C~~Cg~~~~rD 59 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVF-TCPNCGFEMDRD 59 (69)
T ss_pred CccCccCcccccccccccceE-EcCCCCCEECcH
Confidence 688999999988775555544 477788865543
No 131
>PF02364 Glucan_synthase: 1,3-beta-glucan synthase component ; InterPro: IPR003440 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase 48 family GT48 from CAZY, which consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase (2.4.1.34 from EC) also known as callose synthase catalyses the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall []. The reaction catalysed is:- UDP-glucose + {1,3-beta-D-glucosyl}(N) = UDP + {1,3-beta-D-glucosyl}(N+1).; GO: 0003843 1,3-beta-D-glucan synthase activity, 0006075 1,3-beta-D-glucan biosynthetic process, 0000148 1,3-beta-D-glucan synthase complex, 0016020 membrane
Probab=40.96 E-value=25 Score=44.06 Aligned_cols=55 Identities=29% Similarity=0.344 Sum_probs=38.0
Q ss_pred ccchhHHHHHHHHHCCcEEEEeCCCCCcccccCCC-CHHHHHHHHHHHhhhhHHHHHhh
Q 003073 775 SVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPI-NLSDRLNQVLRWALGSVEILFSR 832 (850)
Q Consensus 775 SITEDi~Tg~rLh~rGwRsvY~~p~~aaf~G~aP~-tls~~lkQR~RWA~G~lQIllsr 832 (850)
.+.||+..|+....||-++.++ +-.. .|..-+ .+..-+.=-..-+.|+-+..++|
T Consensus 409 hLsEDIfaG~n~~lRGG~i~h~-ey~q--cGKGRD~Gf~~I~~F~~KI~~G~GEQ~LSR 464 (817)
T PF02364_consen 409 HLSEDIFAGMNATLRGGRIKHC-EYIQ--CGKGRDVGFNSILNFETKIASGMGEQMLSR 464 (817)
T ss_pred cccHHHHHHHHHHhcCCceeeh-hhhh--cccccccCchhhhhhHhHhcCCccchhhhH
Confidence 8899999999999999999998 3333 233322 23333333456678887777776
No 132
>PHA02926 zinc finger-like protein; Provisional
Probab=40.80 E-value=31 Score=37.39 Aligned_cols=61 Identities=25% Similarity=0.525 Sum_probs=42.4
Q ss_pred cCCccccccCCCcccC--CCCCceeecCCCCCCcchhhhHhHHhc-----CCCCCCCccccccccCCC
Q 003073 15 VGGQVCQICGDNVGKT--VDGNPFVACDVCAFPVCRPCYEYERKD-----GNQSCPQCKTRYKKHKGS 75 (850)
Q Consensus 15 ~~~~~C~iCgd~Vg~~--~~Ge~FvAC~eC~FpVCRpCYEyERke-----G~q~CPqCkt~Ykr~kGs 75 (850)
.....|.||=+.|--. ++...|--=..|+-.-|..|..-=|+. +...||.|+++++...=|
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pS 235 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMS 235 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccc
Confidence 4557899999987543 222234444468889999999766653 346799999999865433
No 133
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=40.38 E-value=12 Score=28.51 Aligned_cols=19 Identities=21% Similarity=0.574 Sum_probs=12.9
Q ss_pred HhHHhcCCCCCCCcccccc
Q 003073 52 EYERKDGNQSCPQCKTRYK 70 (850)
Q Consensus 52 EyERkeG~q~CPqCkt~Yk 70 (850)
.|+-++....||.|+.+-.
T Consensus 10 ~y~~~~~~~~CP~Cg~~~~ 28 (33)
T cd00350 10 IYDGEEAPWVCPVCGAPKD 28 (33)
T ss_pred EECCCcCCCcCcCCCCcHH
Confidence 3444446789999987644
No 134
>TIGR02443 conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.
Probab=40.32 E-value=19 Score=31.46 Aligned_cols=31 Identities=23% Similarity=0.601 Sum_probs=25.2
Q ss_pred cCCccccccCCC---cccCCCCCceeecCCCCCC
Q 003073 15 VGGQVCQICGDN---VGKTVDGNPFVACDVCAFP 45 (850)
Q Consensus 15 ~~~~~C~iCgd~---Vg~~~~Ge~FvAC~eC~Fp 45 (850)
..|-+|.-|+.- +...+||...|-|-+|+|-
T Consensus 7 IAGA~CP~C~~~Dtl~~~~e~~~e~vECv~Cg~~ 40 (59)
T TIGR02443 7 IAGAVCPACSAQDTLAMWKENNIELVECVECGYQ 40 (59)
T ss_pred eccccCCCCcCccEEEEEEeCCceEEEeccCCCc
Confidence 567899999854 4456899999999999984
No 135
>PF09488 Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth); InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus (Rhodothermus obamensis), this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm; PDB: 2WVM_A 2WVL_A 2WVK_A 2ZU7_B 2ZU9_B 2ZU8_A.
Probab=37.68 E-value=2.9e+02 Score=32.22 Aligned_cols=40 Identities=20% Similarity=0.240 Sum_probs=25.0
Q ss_pred CchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHh
Q 003073 532 HKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMC 574 (850)
Q Consensus 532 h~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~ 574 (850)
++|+-.|=-++-+.. +...+||-++|||.++ |....+-+-
T Consensus 142 ~GKgEGMiiGillAk-~~g~~YVGFvDADNyi--PGaV~EYvk 181 (381)
T PF09488_consen 142 NGKGEGMIIGILLAK-APGKRYVGFVDADNYI--PGAVNEYVK 181 (381)
T ss_dssp SSHHHHHHHHHHHHH-HTT-SEEEE--TTBS---HHHHHHHHH
T ss_pred cCchHHHHHHHHHHH-hcCCceEeEeeccCCC--cchHHHHHH
Confidence 578887775444333 3678999999999996 566666544
No 136
>PF11077 DUF2616: Protein of unknown function (DUF2616); InterPro: IPR020201 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf52; it is a family of uncharacterised viral proteins.
Probab=37.55 E-value=11 Score=39.20 Aligned_cols=35 Identities=29% Similarity=0.850 Sum_probs=25.8
Q ss_pred ccccCCCcccCCCCCceeecCCCCCCc-chh--------------hhHhHHhcCC
Q 003073 20 CQICGDNVGKTVDGNPFVACDVCAFPV-CRP--------------CYEYERKDGN 59 (850)
Q Consensus 20 C~iCgd~Vg~~~~Ge~FvAC~eC~FpV-CRp--------------CYEyERkeG~ 59 (850)
|+-|... .+.+.-..|+.|-||+ |-. || ||..+++
T Consensus 55 C~fC~~~----~~~~~~~~C~~CfFPl~c~~~~~eEla~Y~LLSVCy-~E~~~~~ 104 (173)
T PF11077_consen 55 CDFCYAV----NTETDRLFCKQCFFPLYCTNGIDEELATYCLLSVCY-WESNEDS 104 (173)
T ss_pred hhHHHhc----ccchhHHHHHhccccccccccchHHHHHHHHHHHHH-hhccccc
Confidence 9999875 2344578999999999 654 67 7766654
No 137
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=37.20 E-value=36 Score=27.00 Aligned_cols=43 Identities=23% Similarity=0.716 Sum_probs=31.5
Q ss_pred ccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccc
Q 003073 20 CQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKT 67 (850)
Q Consensus 20 C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt 67 (850)
|.+|-... +++..+++ = .|+=-+|..|.+--- .....||.|++
T Consensus 2 C~~C~~~~--~~~~~~~l-~-~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKY--SEERRPRL-T-SCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CcCcCccc--cCCCCeEE-c-ccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 88999888 33333333 2 679999999995544 67789999985
No 138
>PRK07219 DNA topoisomerase I; Validated
Probab=36.32 E-value=21 Score=44.81 Aligned_cols=53 Identities=23% Similarity=0.615 Sum_probs=32.4
Q ss_pred CccccccCCCcccC--CCCCceeecCCCCCCcchhhhHhHH----hcCCCCCCCcccccccc
Q 003073 17 GQVCQICGDNVGKT--VDGNPFVACDVCAFPVCRPCYEYER----KDGNQSCPQCKTRYKKH 72 (850)
Q Consensus 17 ~~~C~iCgd~Vg~~--~~Ge~FvAC~eC~FpVCRpCYEyER----keG~q~CPqCkt~Ykr~ 72 (850)
...|..||..+.+. ..|. |..|. +||-|+--+..-+ ..-...||.|+.+..+.
T Consensus 688 ~~~CP~Cg~~l~~k~gr~G~-F~~Cs--~yp~C~~~~~l~~~~~~~~~~~~CpkCg~~l~~~ 746 (822)
T PRK07219 688 IGPCPKCGGELAIKQLKYGS-FLGCT--NYPKCKYTLPLPRRGKITVTDEKCPECGLPLLRV 746 (822)
T ss_pred cccCCCCCCeeEEEcCCCCC-eeeCC--CCCCCCceeecccccccccccCCCCCCCCeEEEE
Confidence 45788888765442 3455 88886 6777764332211 12347899999876543
No 139
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=36.23 E-value=19 Score=30.36 Aligned_cols=29 Identities=21% Similarity=0.456 Sum_probs=20.6
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCc
Q 003073 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPV 46 (850)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpV 46 (850)
.-.|..||.+|.++. ...-+.|..|+|.|
T Consensus 6 ~Y~C~~Cg~~~~~~~-~~~~irCp~Cg~rI 34 (49)
T COG1996 6 EYKCARCGREVELDQ-ETRGIRCPYCGSRI 34 (49)
T ss_pred EEEhhhcCCeeehhh-ccCceeCCCCCcEE
Confidence 347999999985443 22348898898865
No 140
>PF09484 Cas_TM1802: CRISPR-associated protein TM1802 (cas_TM1802); InterPro: IPR013389 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor class of Cas proteins found in at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial [].
Probab=36.17 E-value=19 Score=43.44 Aligned_cols=41 Identities=27% Similarity=0.490 Sum_probs=25.7
Q ss_pred ccCCccccccCCCcccCCCCCc-----------eee-----cCCCCCCcchhhhHhH
Q 003073 14 NVGGQVCQICGDNVGKTVDGNP-----------FVA-----CDVCAFPVCRPCYEYE 54 (850)
Q Consensus 14 ~~~~~~C~iCgd~Vg~~~~Ge~-----------FvA-----C~eC~FpVCRpCYEyE 54 (850)
.....+|.|||.+-.++.+-.. |++ =.-=.||||..||..-
T Consensus 195 ~~~~g~C~iCg~~~~V~~~~~~~~Kfyt~DK~gf~~g~~~k~~~knfpiC~~C~~~l 251 (593)
T PF09484_consen 195 SKKDGVCSICGKEKEVYGDVSKPFKFYTTDKPGFASGFDKKNAWKNFPICQDCALKL 251 (593)
T ss_pred cCCCCeEEeCCCCCeecccchhhheeeecCCcccccccccccccccChhhHHHHHHH
Confidence 3455689999999555444322 222 0123789999999654
No 141
>PRK14973 DNA topoisomerase I; Provisional
Probab=36.10 E-value=26 Score=44.83 Aligned_cols=49 Identities=20% Similarity=0.548 Sum_probs=32.4
Q ss_pred CccccccCCCcccC--CCCCceeecCCCCCCcchhhhHhHHh-cC-----CCCCCCcccc
Q 003073 17 GQVCQICGDNVGKT--VDGNPFVACDVCAFPVCRPCYEYERK-DG-----NQSCPQCKTR 68 (850)
Q Consensus 17 ~~~C~iCgd~Vg~~--~~Ge~FvAC~eC~FpVCRpCYEyERk-eG-----~q~CPqCkt~ 68 (850)
...|..||.++-+. ..|. |..|. +||-|+-.+...+. .| .+.||.|+.+
T Consensus 588 ~~~CP~CG~~l~ik~~k~gk-FigCS--~Yp~Ck~t~~L~~~~~g~~~~~~~~Cp~CG~p 644 (936)
T PRK14973 588 IGPCPVCGKDLRIKHIGSSQ-FIGCS--GYPDCTFNIGLPGTTWGWAIRTDEVCPIHHLN 644 (936)
T ss_pred cccCCcccccceeecccCce-eEECC--CCCCCCccccCCccccccCCCCCCCCCCCCCC
Confidence 35799999876432 3444 99996 66888855544322 12 3689999974
No 142
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=35.64 E-value=40 Score=29.26 Aligned_cols=47 Identities=23% Similarity=0.641 Sum_probs=34.2
Q ss_pred ccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCcccccc
Q 003073 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (850)
Q Consensus 18 ~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Yk 70 (850)
.-|..|+.++--+. .+-++-=.||-| |.+|-|-.. +.+||-|+--+-
T Consensus 6 pnCE~C~~dLp~~s-~~A~ICSfECTF--C~~C~e~~l---~~~CPNCgGelv 52 (57)
T PF06906_consen 6 PNCECCDKDLPPDS-PEAYICSFECTF--CADCAETML---NGVCPNCGGELV 52 (57)
T ss_pred CCccccCCCCCCCC-CcceEEeEeCcc--cHHHHHHHh---cCcCcCCCCccc
Confidence 36999999865443 255565579987 999997554 479999987654
No 143
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=35.58 E-value=29 Score=27.87 Aligned_cols=45 Identities=29% Similarity=0.778 Sum_probs=32.7
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHh-----cCCCCCCCccc
Q 003073 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERK-----DGNQSCPQCKT 67 (850)
Q Consensus 19 ~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERk-----eG~q~CPqCkt 67 (850)
+|+|||. ..+++..|.|..|.--+=..|.....+ ++.=.||.|..
T Consensus 1 ~C~vC~~----~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQ----SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTS----SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCC----cCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 5899999 666778999999987776777765432 34567777753
No 144
>PRK11827 hypothetical protein; Provisional
Probab=35.34 E-value=26 Score=30.66 Aligned_cols=33 Identities=21% Similarity=0.440 Sum_probs=19.6
Q ss_pred CcchhhhHhHHhcCCCCCCCccccccccCCCCc
Q 003073 45 PVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPA 77 (850)
Q Consensus 45 pVCRpCYEyERkeG~q~CPqCkt~Ykr~kGs~r 77 (850)
|+|+-=.+|...+..-+|..|+-.|--..|-|-
T Consensus 12 P~ckg~L~~~~~~~~Lic~~~~laYPI~dgIPV 44 (60)
T PRK11827 12 PVCNGKLWYNQEKQELICKLDNLAFPLRDGIPV 44 (60)
T ss_pred CCCCCcCeEcCCCCeEECCccCeeccccCCccc
Confidence 455544445433344678888888876555543
No 145
>COG4739 Uncharacterized protein containing a ferredoxin domain [Function unknown]
Probab=35.15 E-value=20 Score=36.63 Aligned_cols=45 Identities=22% Similarity=0.527 Sum_probs=40.9
Q ss_pred CcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCcccccc
Q 003073 26 NVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (850)
Q Consensus 26 ~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Yk 70 (850)
-||+..+|-.-+-|.-|+|.-|..=.|-++..-+-.=|+|.-+|-
T Consensus 77 LIG~Kasg~~glnCgaCGfesC~e~~e~~k~~eeF~GP~C~~k~i 121 (182)
T COG4739 77 LIGVKASGTVGLNCGACGFESCSEMLERDKVGEEFVGPNCMFKYI 121 (182)
T ss_pred EEEeccCCccccccccccchhHHHHHHHHhhhhhccCcchhhhhh
Confidence 478889999999999999999999888888888899999999995
No 146
>PRK12495 hypothetical protein; Provisional
Probab=34.35 E-value=18 Score=38.92 Aligned_cols=30 Identities=33% Similarity=0.840 Sum_probs=22.8
Q ss_pred ceeecCCCCCCcchhhhHhHHhcCCCCCCCccccccc
Q 003073 35 PFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (850)
Q Consensus 35 ~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr 71 (850)
.-.-|.+|+.||= +..|...||-|.+.+.+
T Consensus 41 sa~hC~~CG~PIp-------a~pG~~~Cp~CQ~~~~~ 70 (226)
T PRK12495 41 TNAHCDECGDPIF-------RHDGQEFCPTCQQPVTE 70 (226)
T ss_pred chhhcccccCccc-------CCCCeeECCCCCCcccc
Confidence 3455777777774 44899999999999864
No 147
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=34.30 E-value=13 Score=35.69 Aligned_cols=26 Identities=23% Similarity=0.529 Sum_probs=17.9
Q ss_pred eecCCCCCCcchhhhHhHHhcCCCCCCCccccc
Q 003073 37 VACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 69 (850)
Q Consensus 37 vAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Y 69 (850)
+-|+.|+ ++++..+-.-.||+|+.+=
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~CP~Cgs~~ 96 (113)
T PRK12380 71 AWCWDCS-------QVVEIHQHDAQCPHCHGER 96 (113)
T ss_pred EEcccCC-------CEEecCCcCccCcCCCCCC
Confidence 4576666 5566665666799999753
No 148
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=32.72 E-value=57 Score=28.56 Aligned_cols=50 Identities=24% Similarity=0.506 Sum_probs=35.9
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCC-CCCCCccc
Q 003073 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGN-QSCPQCKT 67 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~-q~CPqCkt 67 (850)
...+|..||-.|.-.+.+ +-.+|.+|+=-+-.=|. .-||-++ -.||.|+-
T Consensus 6 ~~~~CtSCg~~i~~~~~~-~~F~CPnCG~~~I~RC~-~CRk~~~~Y~CP~CGF 56 (59)
T PRK14890 6 EPPKCTSCGIEIAPREKA-VKFLCPNCGEVIIYRCE-KCRKQSNPYTCPKCGF 56 (59)
T ss_pred cCccccCCCCcccCCCcc-CEeeCCCCCCeeEeech-hHHhcCCceECCCCCC
Confidence 445899999998666555 44579999877444465 5577776 57999973
No 149
>PRK11595 DNA utilization protein GntX; Provisional
Probab=32.15 E-value=31 Score=36.51 Aligned_cols=39 Identities=23% Similarity=0.585 Sum_probs=25.7
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCcccc
Q 003073 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 68 (850)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~ 68 (850)
...|.+||..+..++ ..+|..|.+.-..- ...||+|+.+
T Consensus 5 P~~C~~C~~~~~~~~------------~~lC~~C~~~l~~~-~~~C~~Cg~~ 43 (227)
T PRK11595 5 PGLCWLCRMPLALSH------------WGICSVCSRALRTL-KTCCPQCGLP 43 (227)
T ss_pred CCcCccCCCccCCCC------------CcccHHHHhhCCcc-cCcCccCCCc
Confidence 457999998874321 23788887654332 3589999865
No 150
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=31.76 E-value=1.6e+02 Score=36.71 Aligned_cols=43 Identities=21% Similarity=0.235 Sum_probs=28.7
Q ss_pred cCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhh
Q 003073 531 HHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM 576 (850)
Q Consensus 531 hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF 576 (850)
..+|+-.|=-++-... +...+||-++|||.++| -...+-+-.|
T Consensus 146 r~gk~egm~~g~~la~-~~g~~yvgfidadny~p--g~v~ey~~~y 188 (694)
T PRK14502 146 RSGKAEGMILGIILTM-FSGRDYVGFIDTDNYIP--GAVWEYAKHF 188 (694)
T ss_pred ecCcchHHHHHHHHHH-hcCCceEeEeeccCCCC--chHHHHHHHH
Confidence 4578877765443222 46789999999999975 5566655433
No 151
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=31.40 E-value=43 Score=29.39 Aligned_cols=48 Identities=31% Similarity=0.638 Sum_probs=33.8
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCC-CCCCCcc
Q 003073 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGN-QSCPQCK 66 (850)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~-q~CPqCk 66 (850)
..+|..||-.|-..+.+-.| +|..|+=-+-.-|- --||-|| -.||.|+
T Consensus 9 ~~~CtSCg~~i~p~e~~v~F-~CPnCGe~~I~Rc~-~CRk~g~~Y~Cp~CG 57 (61)
T COG2888 9 PPVCTSCGREIAPGETAVKF-PCPNCGEVEIYRCA-KCRKLGNPYRCPKCG 57 (61)
T ss_pred CceeccCCCEeccCCceeEe-eCCCCCceeeehhh-hHHHcCCceECCCcC
Confidence 46899999998887777665 79999933322232 2367776 5799886
No 152
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.34 E-value=37 Score=39.48 Aligned_cols=45 Identities=24% Similarity=0.680 Sum_probs=32.8
Q ss_pred ccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCcccccc
Q 003073 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (850)
Q Consensus 18 ~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Yk 70 (850)
..|.||.+..- ++.+ -.|+--.|..|...-... ...||.|++.+.
T Consensus 27 l~C~IC~d~~~-----~Pvi--tpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~ 71 (397)
T TIGR00599 27 LRCHICKDFFD-----VPVL--TSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQ 71 (397)
T ss_pred cCCCcCchhhh-----CccC--CCCCCchhHHHHHHHHhC-CCCCCCCCCccc
Confidence 48999987642 2333 368999999999754433 458999999874
No 153
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=30.53 E-value=41 Score=27.70 Aligned_cols=33 Identities=21% Similarity=0.504 Sum_probs=25.2
Q ss_pred cccccCCCcccCCCCCceeecCCCC-CCcchhhhHhHHh
Q 003073 19 VCQICGDNVGKTVDGNPFVACDVCA-FPVCRPCYEYERK 56 (850)
Q Consensus 19 ~C~iCgd~Vg~~~~Ge~FvAC~eC~-FpVCRpCYEyERk 56 (850)
.|.+||-++. .+..-|-.++ +-+|.+||+-.|-
T Consensus 2 ~C~~Cg~D~t-----~vryh~~~~~~~dLC~~CF~~G~f 35 (45)
T cd02336 2 HCFTCGNDCT-----RVRYHNLKAKKYDLCPSCYQEGRF 35 (45)
T ss_pred cccCCCCccC-----ceEEEecCCCccccChHHHhCcCC
Confidence 6999999974 2666677776 9999999965443
No 154
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=30.30 E-value=16 Score=31.77 Aligned_cols=13 Identities=38% Similarity=0.968 Sum_probs=8.2
Q ss_pred CCCCCCccccccc
Q 003073 59 NQSCPQCKTRYKK 71 (850)
Q Consensus 59 ~q~CPqCkt~Ykr 71 (850)
.-+||+||.-|..
T Consensus 44 ~PVCP~Ck~iye~ 56 (58)
T PF11238_consen 44 FPVCPECKEIYES 56 (58)
T ss_pred CCCCcCHHHHHHh
Confidence 3566777776654
No 155
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=30.16 E-value=17 Score=30.49 Aligned_cols=7 Identities=43% Similarity=1.312 Sum_probs=3.6
Q ss_pred CCCCccc
Q 003073 61 SCPQCKT 67 (850)
Q Consensus 61 ~CPqCkt 67 (850)
.||.|+.
T Consensus 36 ~CP~C~a 42 (50)
T cd00730 36 VCPVCGA 42 (50)
T ss_pred CCCCCCC
Confidence 5555544
No 156
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=29.30 E-value=3.2e+02 Score=29.58 Aligned_cols=60 Identities=22% Similarity=0.429 Sum_probs=44.2
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhhHhHHHhhCC
Q 003073 353 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNI 421 (850)
Q Consensus 353 VfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~WvPFCkk~~I 421 (850)
|+|+|-+ ..|.||-.|+.++.+..++.+.+.|+=-.||.....+.-| + -.++ -||+.|+.
T Consensus 4 iLlatlG---~sPqVVTETL~aL~~~g~~p~EV~vitT~~~~~~~~~~ll-~-g~~~----~l~~~y~~ 63 (224)
T PF09623_consen 4 ILLATLG---TSPQVVTETLYALAQQGEIPDEVHVITTRDGAVRAALRLL-D-GGLQ----RLCQDYYL 63 (224)
T ss_pred EEEEecC---CCchHHHHHHHHHHcCCCCCCEEEEEECCChHHHHHHHHH-H-HHHH----HHHHhhcC
Confidence 7889998 7889999999999999998888878777777665433333 0 0122 38888764
No 157
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=29.08 E-value=34 Score=37.94 Aligned_cols=22 Identities=41% Similarity=1.058 Sum_probs=17.4
Q ss_pred ccCCccccccCCCcccCCCCCceeecCCCC
Q 003073 14 NVGGQVCQICGDNVGKTVDGNPFVACDVCA 43 (850)
Q Consensus 14 ~~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~ 43 (850)
...+..|.-||+ .-|++|-.|.
T Consensus 226 ~~~~~~C~~CGg--------~rFlpC~~C~ 247 (281)
T KOG2824|consen 226 CEGGGVCESCGG--------ARFLPCSNCH 247 (281)
T ss_pred CCCCCcCCCcCC--------cceEecCCCC
Confidence 566789999985 4799998884
No 158
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=28.87 E-value=40 Score=28.84 Aligned_cols=25 Identities=32% Similarity=0.720 Sum_probs=15.2
Q ss_pred ccccccCCCcccCC--CCCceeecCCCC
Q 003073 18 QVCQICGDNVGKTV--DGNPFVACDVCA 43 (850)
Q Consensus 18 ~~C~iCgd~Vg~~~--~Ge~FvAC~eC~ 43 (850)
..|..||..|-+.. .|+ .|-|.+|+
T Consensus 3 ~~CP~CG~~iev~~~~~Ge-iV~Cp~CG 29 (54)
T TIGR01206 3 FECPDCGAEIELENPELGE-LVICDECG 29 (54)
T ss_pred cCCCCCCCEEecCCCccCC-EEeCCCCC
Confidence 37899999887753 344 33443333
No 159
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=28.41 E-value=17 Score=26.19 Aligned_cols=15 Identities=27% Similarity=0.733 Sum_probs=10.5
Q ss_pred HHhcCCCCCCCcccc
Q 003073 54 ERKDGNQSCPQCKTR 68 (850)
Q Consensus 54 ERkeG~q~CPqCkt~ 68 (850)
+..++...||.|+++
T Consensus 11 ~~~~~~~fC~~CG~~ 25 (26)
T PF13248_consen 11 EIDPDAKFCPNCGAK 25 (26)
T ss_pred cCCcccccChhhCCC
Confidence 346677888888765
No 160
>PRK14873 primosome assembly protein PriA; Provisional
Probab=27.93 E-value=41 Score=41.52 Aligned_cols=10 Identities=30% Similarity=1.049 Sum_probs=5.8
Q ss_pred CCCCCCcccc
Q 003073 59 NQSCPQCKTR 68 (850)
Q Consensus 59 ~q~CPqCkt~ 68 (850)
...||.|+..
T Consensus 422 p~~Cp~Cgs~ 431 (665)
T PRK14873 422 DWRCPRCGSD 431 (665)
T ss_pred CccCCCCcCC
Confidence 3566666554
No 161
>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated
Probab=27.31 E-value=40 Score=42.76 Aligned_cols=57 Identities=23% Similarity=0.438 Sum_probs=33.0
Q ss_pred cCCccccccCCCccc---CCCCCceeecCCCCCCcchhhhHhHH-----------hcCCCCCCCccccccccCC
Q 003073 15 VGGQVCQICGDNVGK---TVDGNPFVACDVCAFPVCRPCYEYER-----------KDGNQSCPQCKTRYKKHKG 74 (850)
Q Consensus 15 ~~~~~C~iCgd~Vg~---~~~Ge~FvAC~eC~FpVCRpCYEyER-----------keG~q~CPqCkt~Ykr~kG 74 (850)
.....|..||..-.+ .-.| .|++|. +||-|+-=....+ ......||.|+......+|
T Consensus 590 ~~~~~CP~Cg~~~L~~k~gr~G-~Fl~Cs--~yP~C~~t~~~~~~~~~~~~~~~~~~~~~~CP~Cg~~m~lK~g 660 (860)
T PRK06319 590 VTEIDCPKCHKGKLVKIWAKNR-YFYGCS--EYPECDYKTSEEELTFNKEDYAEDTPWDSPCPLCGGEMKVRHG 660 (860)
T ss_pred ccCcccCCCCCcceeEEecCCC-ceeecc--CCccccccCCcccccccccccccccccCCcCccCCCeeEEecC
Confidence 345689999864222 2345 699994 5777742111111 1124689999876665443
No 162
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=27.25 E-value=20 Score=41.47 Aligned_cols=63 Identities=24% Similarity=0.522 Sum_probs=40.2
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcc-hhhhHhHHhcCCCCCCCcccc---cccc--CCCCcccCC
Q 003073 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVC-RPCYEYERKDGNQSCPQCKTR---YKKH--KGSPAILGD 81 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVC-RpCYEyERkeG~q~CPqCkt~---Ykr~--kGs~rv~gd 81 (850)
-+-.|..||+-+|+...----.+|-. -.= |==|||=-+.|.+.||-|+.- -+|. -|||-|+.+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsH---IfH~rCl~e~L~~n~~rsCP~CrklrSs~~rpgfvgs~~Vese 432 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSH---IFHLRCLQEILENNGTRSCPNCRKLRSSMKRPGFVGSVPVESE 432 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhH---HHHHHHHHHHHHhCCCCCCccHHHHHhhccCCCCcCCCccccc
Confidence 34579999999999754443455521 111 112677789999999999832 1332 366777755
No 163
>PF12773 DZR: Double zinc ribbon
Probab=27.21 E-value=44 Score=26.94 Aligned_cols=13 Identities=23% Similarity=0.736 Sum_probs=7.4
Q ss_pred CCccccccCCCcc
Q 003073 16 GGQVCQICGDNVG 28 (850)
Q Consensus 16 ~~~~C~iCgd~Vg 28 (850)
+...|..||-.+.
T Consensus 11 ~~~fC~~CG~~l~ 23 (50)
T PF12773_consen 11 DAKFCPHCGTPLP 23 (50)
T ss_pred cccCChhhcCChh
Confidence 3446666666655
No 164
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=27.10 E-value=1.3e+02 Score=34.59 Aligned_cols=45 Identities=11% Similarity=0.041 Sum_probs=32.0
Q ss_pred CCEEEEecCCCCCCcHHHHHHHHhhhcC------------CC-------CCcceEEEecccccc
Q 003073 551 GPFLLNLDCDHYINNSKALREAMCFMMD------------PN-------LGKHVCYVQFPQRFD 595 (850)
Q Consensus 551 ge~I~ilDAD~~~~~pdfLr~tv~fF~D------------P~-------~G~~v~~VQtPQrF~ 595 (850)
.++|+|.|||+-.-.++.|++++-.+.+ +- ....+-.+||||-|.
T Consensus 96 ~d~VLVhdadrPfv~~e~I~~li~~~~~~~a~i~~~pv~Dtik~~~~tldR~~l~~~QTPQ~f~ 159 (378)
T PRK09382 96 SEYVLIHDAARPFVPKELIDRLIEALDKADCVLPALPVADTLKRANETVDREGLKLIQTPQLSR 159 (378)
T ss_pred CCeEEEeeccccCCCHHHHHHHHHHhhcCCeEEEEEEeccCcEEeeeEcCcccEEEEECCCCCC
Confidence 4899999999654578999988875532 10 123566789999884
No 165
>PTZ00293 thymidine kinase; Provisional
Probab=26.92 E-value=29 Score=36.98 Aligned_cols=35 Identities=20% Similarity=0.572 Sum_probs=22.8
Q ss_pred ccccccCCCccc----CCCCCc-eeecCCCCCCcchhhhH
Q 003073 18 QVCQICGDNVGK----TVDGNP-FVACDVCAFPVCRPCYE 52 (850)
Q Consensus 18 ~~C~iCgd~Vg~----~~~Ge~-FvAC~eC~FpVCRpCYE 52 (850)
.+|..||.+--. ..+|+. -+-=+|=--|+||.||+
T Consensus 138 aiC~~CG~~A~~t~R~~~~~~~v~IGg~e~Y~a~CR~c~~ 177 (211)
T PTZ00293 138 AVCMFCGKEASFSKRIVQSEQIELIGGEDKYIATCRKCFR 177 (211)
T ss_pred eEchhhCCcceeEEEEcCCCCEEEECCcccEEehhhhhhh
Confidence 589999988443 334444 23333445789999995
No 166
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=26.82 E-value=19 Score=25.53 Aligned_cols=13 Identities=38% Similarity=0.928 Sum_probs=6.6
Q ss_pred hcCCCCCCCcccc
Q 003073 56 KDGNQSCPQCKTR 68 (850)
Q Consensus 56 keG~q~CPqCkt~ 68 (850)
.++.+-||+|+++
T Consensus 10 ~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 10 EDDAKFCPNCGTP 22 (23)
T ss_pred CCcCcchhhhCCc
Confidence 4444555555543
No 167
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=26.39 E-value=42 Score=30.12 Aligned_cols=31 Identities=26% Similarity=0.701 Sum_probs=24.7
Q ss_pred cCCccccccCCC--ccc-CCCCCceeecCCCCCC
Q 003073 15 VGGQVCQICGDN--VGK-TVDGNPFVACDVCAFP 45 (850)
Q Consensus 15 ~~~~~C~iCgd~--Vg~-~~~Ge~FvAC~eC~Fp 45 (850)
..|-+|.-|+.- |.+ .+||...+-|-+|+|-
T Consensus 6 IAGa~CP~C~~~D~i~~~~e~~ve~vECV~CGy~ 39 (71)
T PF09526_consen 6 IAGAVCPKCQAMDTIMMWRENGVEYVECVECGYT 39 (71)
T ss_pred ecCccCCCCcCccEEEEEEeCCceEEEecCCCCe
Confidence 467899999854 544 6889899999999984
No 168
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.89 E-value=27 Score=30.74 Aligned_cols=17 Identities=41% Similarity=1.015 Sum_probs=14.8
Q ss_pred HhcCCCCCCCccccccc
Q 003073 55 RKDGNQSCPQCKTRYKK 71 (850)
Q Consensus 55 RkeG~q~CPqCkt~Ykr 71 (850)
-++|.-.||=|.|+|+-
T Consensus 44 g~~gev~CPYC~t~y~l 60 (62)
T COG4391 44 GDEGEVVCPYCSTRYRL 60 (62)
T ss_pred CCCCcEecCccccEEEe
Confidence 46899999999999973
No 169
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=25.72 E-value=50 Score=38.36 Aligned_cols=34 Identities=26% Similarity=0.684 Sum_probs=22.8
Q ss_pred ceeecCCCCCCcchhhhHhHHhcC-CCCCCCcccccccc
Q 003073 35 PFVACDVCAFPVCRPCYEYERKDG-NQSCPQCKTRYKKH 72 (850)
Q Consensus 35 ~FvAC~eC~FpVCRpCYEyERkeG-~q~CPqCkt~Ykr~ 72 (850)
..++|+||+.-+=+| ..+.| .-.||+|++.-.|+
T Consensus 12 ~~~~C~~Cd~l~~~~----~l~~g~~a~CpRCg~~L~~~ 46 (403)
T TIGR00155 12 KHILCSQCDMLVALP----RIESGQKAACPRCGTTLTVG 46 (403)
T ss_pred CeeeCCCCCCccccc----CCCCCCeeECCCCCCCCcCC
Confidence 368899998764333 12223 35799999998665
No 170
>PF04641 Rtf2: Rtf2 RING-finger
Probab=25.47 E-value=59 Score=35.33 Aligned_cols=49 Identities=22% Similarity=0.574 Sum_probs=37.4
Q ss_pred CCccccccCCCcccCCCCC-ceeecCCCCCCcchhhhHhHHhcCCCCCCCcccccc
Q 003073 16 GGQVCQICGDNVGKTVDGN-PFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge-~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Yk 70 (850)
..-+|.|++... +|. -||+=--||=-+|..|.+-- + .+..||.|.++|.
T Consensus 112 ~~~~CPvt~~~~----~~~~~fv~l~~cG~V~s~~alke~-k-~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 112 GRFICPVTGKEF----NGKHKFVYLRPCGCVFSEKALKEL-K-KSKKCPVCGKPFT 161 (260)
T ss_pred ceeECCCCCccc----CCceeEEEEcCCCCEeeHHHHHhh-c-ccccccccCCccc
Confidence 444899998776 454 58888888988888888544 4 4567999999996
No 171
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=25.29 E-value=31 Score=33.79 Aligned_cols=52 Identities=31% Similarity=0.643 Sum_probs=32.9
Q ss_pred cCCccccccCCC--cccCCCC-CceeecCCCCCCcchhhhHhHHhcCCCCCCCcccccc
Q 003073 15 VGGQVCQICGDN--VGKTVDG-NPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (850)
Q Consensus 15 ~~~~~C~iCgd~--Vg~~~~G-e~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Yk 70 (850)
..+..|.-||.. |....++ -.|.+| +.||.|+-=.- .+-..+.||+|.-+..
T Consensus 58 ~~~~~Cp~C~~~~~~~k~~~~~~~f~~~--~~~Pkc~~~~~--~~~~~~~cp~c~~~~~ 112 (140)
T COG0551 58 KTGVKCPKCGKGLLVLKKGRFGKNFLGC--SNYPKCRFTEK--PKPKEKKCPKCGSRKL 112 (140)
T ss_pred cCceeCCCCCCCceEEEeccCCceEEee--cCCCcCceeec--CCcccccCCcCCCcee
Confidence 445688899953 2223332 379999 79999985332 2333345999997443
No 172
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.21 E-value=19 Score=41.12 Aligned_cols=46 Identities=28% Similarity=0.710 Sum_probs=37.9
Q ss_pred ccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccccc
Q 003073 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 69 (850)
Q Consensus 18 ~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Y 69 (850)
-+|.||-+=|-.+- -=.||+--+|+.|.--.-+.||..||-|++..
T Consensus 44 v~c~icl~llk~tm------ttkeClhrfc~~ci~~a~r~gn~ecptcRk~l 89 (381)
T KOG0311|consen 44 VICPICLSLLKKTM------TTKECLHRFCFDCIWKALRSGNNECPTCRKKL 89 (381)
T ss_pred hccHHHHHHHHhhc------ccHHHHHHHHHHHHHHHHHhcCCCCchHHhhc
Confidence 37888887665542 22489999999999999999999999999876
No 173
>PF02411 MerT: MerT mercuric transport protein; InterPro: IPR003457 MerT is an mercuric transport integral membrane protein and is responsible for transport of the Hg2+ iron from periplasmic MerP (also part of the transport system) to mercuric reductase (MerA).; GO: 0015097 mercury ion transmembrane transporter activity, 0015694 mercury ion transport, 0016020 membrane
Probab=25.11 E-value=2.2e+02 Score=27.83 Aligned_cols=53 Identities=21% Similarity=0.558 Sum_probs=31.5
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhccccc-----------ch-----HHHHHHHHHHHHHHHHHHHHhhh
Q 003073 268 INPYRMVIFLRLIILGIFLYYRIKNPVH-----------NA-----IALWLISVICEIWFAISWIFDQF 320 (850)
Q Consensus 268 ~~~yR~~i~~~l~~~~~yl~wRi~~~~~-----------~a-----~~lWl~~vi~Ei~fa~~wiL~q~ 320 (850)
+-|||-..+...++++.|-+||+..+.. .. ..+|++.++.=+..++-|+...|
T Consensus 47 lepyRp~fi~~tl~~lg~a~~~~yr~~~~c~~g~~C~~~~~~~~~~~~lwi~t~~vl~~l~~py~~p~f 115 (116)
T PF02411_consen 47 LEPYRPYFIALTLLFLGYAFWRLYRPRKACEPGSACARPQSRRQTKILLWIVTVLVLLLLAFPYYAPLF 115 (116)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578876555555555566666543311 11 35788877777777777776543
No 174
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.98 E-value=36 Score=40.41 Aligned_cols=49 Identities=24% Similarity=0.588 Sum_probs=31.4
Q ss_pred CCCCC-ceeecCCCCCC-cchhhh---HhHHhcCCCCCCCccccccccCCCCcc
Q 003073 30 TVDGN-PFVACDVCAFP-VCRPCY---EYERKDGNQSCPQCKTRYKKHKGSPAI 78 (850)
Q Consensus 30 ~~~Ge-~FvAC~eC~Fp-VCRpCY---EyERkeG~q~CPqCkt~Ykr~kGs~rv 78 (850)
+-.|- .++.|..|+.. .|.-|= .|-++++.-.|..|+..++-..-||.=
T Consensus 206 nrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C 259 (505)
T TIGR00595 206 NRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQC 259 (505)
T ss_pred eCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCC
Confidence 44565 47788888765 366663 344556666777777777766666643
No 175
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=24.59 E-value=23 Score=30.35 Aligned_cols=17 Identities=29% Similarity=0.800 Sum_probs=14.0
Q ss_pred hcCCCCCCCcccccccc
Q 003073 56 KDGNQSCPQCKTRYKKH 72 (850)
Q Consensus 56 keG~q~CPqCkt~Ykr~ 72 (850)
++.--+||.|+++|.|-
T Consensus 18 ~dDiVvCp~CgapyHR~ 34 (54)
T PF14446_consen 18 GDDIVVCPECGAPYHRD 34 (54)
T ss_pred CCCEEECCCCCCcccHH
Confidence 56668999999999873
No 176
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.57 E-value=38 Score=34.46 Aligned_cols=44 Identities=27% Similarity=0.674 Sum_probs=35.6
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccc
Q 003073 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKT 67 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt 67 (850)
.-..|.||-+..--. ....|+--.|+.|-+.-.. +.-.||.|+.
T Consensus 12 ~~~~C~iC~~~~~~p-------~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFREP-------VLLPCGHNFCRACLTRSWE-GPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhhcC-------ccccccchHhHHHHHHhcC-CCcCCcccCC
Confidence 445899998875443 5667899999999988877 8899999993
No 177
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=24.57 E-value=40 Score=27.63 Aligned_cols=38 Identities=21% Similarity=0.391 Sum_probs=30.2
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhc
Q 003073 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKD 57 (850)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERke 57 (850)
.+.|.+|+...++.... .-|.-|+--+|..|-.+....
T Consensus 2 ~~~C~~C~~~F~~~~rk---~~Cr~Cg~~~C~~C~~~~~~~ 39 (57)
T cd00065 2 ASSCMGCGKPFTLTRRR---HHCRNCGRIFCSKCSSNRIPL 39 (57)
T ss_pred cCcCcccCccccCCccc---cccCcCcCCcChHHcCCeeec
Confidence 46899999998874332 579999999999999887653
No 178
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=24.39 E-value=31 Score=26.28 Aligned_cols=25 Identities=32% Similarity=0.821 Sum_probs=11.2
Q ss_pred ccccccCCCcccCCCCCceeecCCCCC
Q 003073 18 QVCQICGDNVGKTVDGNPFVACDVCAF 44 (850)
Q Consensus 18 ~~C~iCgd~Vg~~~~Ge~FvAC~eC~F 44 (850)
..|..|+.+-.+ +||.+|| |.+|++
T Consensus 3 p~Cp~C~se~~y-~D~~~~v-Cp~C~~ 27 (30)
T PF08274_consen 3 PKCPLCGSEYTY-EDGELLV-CPECGH 27 (30)
T ss_dssp ---TTT-----E-E-SSSEE-ETTTTE
T ss_pred CCCCCCCCccee-ccCCEEe-CCcccc
Confidence 357778877655 6777665 777764
No 179
>PRK08359 transcription factor; Validated
Probab=24.31 E-value=26 Score=36.45 Aligned_cols=30 Identities=37% Similarity=1.050 Sum_probs=19.3
Q ss_pred ccccccCCCcccC-----CCCCceeecCCCCCCcchhhh-HhHH
Q 003073 18 QVCQICGDNVGKT-----VDGNPFVACDVCAFPVCRPCY-EYER 55 (850)
Q Consensus 18 ~~C~iCgd~Vg~~-----~~Ge~FvAC~eC~FpVCRpCY-EyER 55 (850)
..|.|||.+|-=. .+|-. .-||..|| .|-.
T Consensus 7 ~~CEiCG~~i~g~~~~v~ieGae--------l~VC~~Ca~k~G~ 42 (176)
T PRK08359 7 RYCEICGAEIRGPGHRIRIEGAE--------LLVCDRCYEKYGR 42 (176)
T ss_pred ceeecCCCccCCCCeEEEEcCeE--------EehHHHHHHHhCC
Confidence 3599999997321 24433 45778888 6644
No 180
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=24.12 E-value=28 Score=33.64 Aligned_cols=28 Identities=14% Similarity=0.533 Sum_probs=16.2
Q ss_pred eecCCCCCCcchhhhHhHHhcCC-CCCCCccccccc
Q 003073 37 VACDVCAFPVCRPCYEYERKDGN-QSCPQCKTRYKK 71 (850)
Q Consensus 37 vAC~eC~FpVCRpCYEyERkeG~-q~CPqCkt~Ykr 71 (850)
+-|+.|+ ++++..+-. ..||+|+.+-.+
T Consensus 72 ~~C~~Cg-------~~~~~~~~~~~~CP~Cgs~~~~ 100 (117)
T PRK00564 72 LECKDCS-------HVFKPNALDYGVCEKCHSKNVI 100 (117)
T ss_pred EEhhhCC-------CccccCCccCCcCcCCCCCceE
Confidence 4466665 334443322 359999987544
No 181
>TIGR02556 cas_TM1802 CRISPR-associated protein, TM1802 family. This minor cas protein is found in CRISPR/cas regions of at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial.
Probab=24.10 E-value=47 Score=40.21 Aligned_cols=37 Identities=30% Similarity=0.696 Sum_probs=22.5
Q ss_pred CccccccCCCcccCCCC----------Cceee--cCCCCCCcchhhhHh
Q 003073 17 GQVCQICGDNVGKTVDG----------NPFVA--CDVCAFPVCRPCYEY 53 (850)
Q Consensus 17 ~~~C~iCgd~Vg~~~~G----------e~FvA--C~eC~FpVCRpCYEy 53 (850)
..+|.|||.+--++.+- .-|++ =.-=.||||+.||.+
T Consensus 170 ~g~C~iCg~~~~~v~~~~~fKfyT~DK~gf~sgk~~~knfpIC~eC~~~ 218 (555)
T TIGR02556 170 SGTCHLCGERSDITYDSFVYKFYTTDKPGFSSDKGFSKNFSICRDCYKD 218 (555)
T ss_pred ceEEeccCCCCceeccceeeeeeecCCCcccCCccccccCchhHHHHHH
Confidence 58999999973322221 12333 112279999999954
No 182
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=23.97 E-value=41 Score=33.92 Aligned_cols=43 Identities=40% Similarity=0.922 Sum_probs=25.8
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhH-HhcCCCCCCCccc
Q 003073 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE-RKDGNQSCPQCKT 67 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyE-RkeG~q~CPqCkt 67 (850)
.+..|..|| |.-||+|.+|.= -|+--.+.. ...+-.-||.|++
T Consensus 98 ~~~~C~~Cg--------g~rfv~C~~C~G-s~k~~~~~~~~~~~~~rC~~Cne 141 (147)
T cd03031 98 GGGVCEGCG--------GARFVPCSECNG-SCKVFAENATAAGGFLRCPECNE 141 (147)
T ss_pred CCCCCCCCC--------CcCeEECCCCCC-cceEEeccCcccccEEECCCCCc
Confidence 456799998 448999988852 122211110 1234478999975
No 183
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=23.92 E-value=57 Score=25.27 Aligned_cols=31 Identities=19% Similarity=0.463 Sum_probs=23.1
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhH
Q 003073 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE 54 (850)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyE 54 (850)
...|..|++.. +-.-|.+|..++|..|....
T Consensus 3 ~~~C~~H~~~~-------~~~~C~~C~~~~C~~C~~~~ 33 (42)
T PF00643_consen 3 EPKCPEHPEEP-------LSLFCEDCNEPLCSECTVSG 33 (42)
T ss_dssp SSB-SSTTTSB-------EEEEETTTTEEEEHHHHHTS
T ss_pred CccCccCCccc-------eEEEecCCCCccCccCCCCC
Confidence 45777777542 56789999999999999654
No 184
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=23.89 E-value=42 Score=43.97 Aligned_cols=48 Identities=23% Similarity=0.619 Sum_probs=30.0
Q ss_pred ccccccCCCcccCCCCCceeecCCCCCCc-----chhhhHhH--HhcCCCCCCCcccccccc
Q 003073 18 QVCQICGDNVGKTVDGNPFVACDVCAFPV-----CRPCYEYE--RKDGNQSCPQCKTRYKKH 72 (850)
Q Consensus 18 ~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpV-----CRpCYEyE--RkeG~q~CPqCkt~Ykr~ 72 (850)
..|.-||..+-- .-|.+|+-+. |..|=--- -..+...||.|+++-...
T Consensus 668 rkCPkCG~~t~~-------~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~ 722 (1337)
T PRK14714 668 RRCPSCGTETYE-------NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPY 722 (1337)
T ss_pred EECCCCCCcccc-------ccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCccccc
Confidence 478888886421 2788888664 77775311 112355799998876543
No 185
>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases. The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=23.86 E-value=46 Score=29.90 Aligned_cols=48 Identities=17% Similarity=0.206 Sum_probs=29.1
Q ss_pred hcchHHHHHhHhhhcCCCCCCcchhhHHHHhhhhccccccccCccccccceeecccchhHHHHHHHHHCCcEEEEeCC
Q 003073 721 FGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMP 798 (850)
Q Consensus 721 fG~s~~f~~S~l~e~GG~p~~~~~~~~l~eai~v~sC~YE~~T~WG~evGW~y~SITEDi~Tg~rLh~rGwRsvY~~p 798 (850)
+|-...+.++.+.++||++.. =.-| |. ||.++..||...|.++.....
T Consensus 20 ~Gg~~~~~~~~f~~vnGfde~--------------------f~gW--------G~--ED~Dl~~Rl~~~g~~~~~~~~ 67 (78)
T PF02709_consen 20 FGGVFAISREDFEKVNGFDER--------------------FWGW--------GG--EDDDLYNRLWKAGLKIVRVPG 67 (78)
T ss_dssp --SEEEEEHHHHHHTTSS-SS---------------------TSC--------SS--HHHHHHHHHHHTT---B-SST
T ss_pred eEEEEEEeHHHHHHcCCCCcc--------------------cccc--------Cc--cHHHHHHHHHHcCCeEEecCC
Confidence 455566666777899998741 1222 22 999999999999998776543
No 186
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=23.39 E-value=1.8e+02 Score=37.17 Aligned_cols=60 Identities=12% Similarity=0.066 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHH-HhhhcccccchHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHhh
Q 003073 271 YRMVIFLRLIILGIFL-YYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLS 336 (850)
Q Consensus 271 yR~~i~~~l~~~~~yl-~wRi~~~~~~a~~lWl~~vi~Ei~fa~~wiL~q~~kw~Pv~R~~~~drL~ 336 (850)
++++.++.+++.+.+| .|.+. ..|+|++++++ +..++.+++.-+.+|++-.|..-..||.
T Consensus 22 ~~~l~v~~lfla~~~~Gl~~~l-----p~~~~~~~l~~-~~~~~~~~l~~~~rfr~P~~~ea~~Rle 82 (851)
T TIGR02302 22 LRVMSLVGLFLSLGWAGLFLAL-----PFWLHIAGLVL-FAALALVALIPAIRFRWPSRDEALARLE 82 (851)
T ss_pred HHHHHHHHHHHHHHHHhHHHhh-----HHHHHHHHHHH-HHHHHHHHHhhhhhcCCCCHHHHHHHHH
Confidence 3444444444444443 33333 35778776666 3333333334445555555655555554
No 187
>TIGR03602 streptolysinS bacteriocin protoxin, streptolysin S family. Members of this family are bacteriocin precursors. These small, ribosomally produced polypeptide precursors are extensively processed post-translationally. This family belongs to a class of heterocycle-containing bacteriocins, including streptolysin S from Streptococcus pyogenes, and related bacteriocins from Streptococcus iniae and Clostridium botulinum. Streptolysin S is hemolytic. Bacteriocin genes in general are small and highly diverse, with odd sequence composition, and are easily missed by many gene-finding programs.
Probab=23.22 E-value=29 Score=29.38 Aligned_cols=12 Identities=0% Similarity=-0.493 Sum_probs=5.0
Q ss_pred CCCCC-cccccCC
Q 003073 650 RKPGL-LSSLFGG 661 (850)
Q Consensus 650 ~~~~~-~~~~~~~ 661 (850)
|+..| ||+|||.
T Consensus 23 pggcccccc~cc~ 35 (56)
T TIGR03602 23 PGGCCCCCCCCCF 35 (56)
T ss_pred CCCeEEEeccEEE
Confidence 44434 3334443
No 188
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=23.11 E-value=27 Score=33.63 Aligned_cols=27 Identities=22% Similarity=0.529 Sum_probs=16.3
Q ss_pred eecCCCCCCcchhhhHhHHhcCC-CCCCCcccccc
Q 003073 37 VACDVCAFPVCRPCYEYERKDGN-QSCPQCKTRYK 70 (850)
Q Consensus 37 vAC~eC~FpVCRpCYEyERkeG~-q~CPqCkt~Yk 70 (850)
.-|+.|+ ++++..+-. -.||+|+.+--
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~~CP~Cgs~~~ 98 (114)
T PRK03681 71 CWCETCQ-------QYVTLLTQRVRRCPQCHGDML 98 (114)
T ss_pred EEcccCC-------CeeecCCccCCcCcCcCCCCc
Confidence 4466666 244444443 56999997643
No 189
>PRK06393 rpoE DNA-directed RNA polymerase subunit E''; Validated
Probab=22.97 E-value=38 Score=30.05 Aligned_cols=23 Identities=22% Similarity=0.580 Sum_probs=17.1
Q ss_pred ceeecCCCCCCcchhhhHhHHhcCCCCCCCcccc
Q 003073 35 PFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 68 (850)
Q Consensus 35 ~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~ 68 (850)
.|.||.+|.|-+ + .+.||-|+..
T Consensus 4 ~~~AC~~C~~i~----------~-~~~Cp~Cgs~ 26 (64)
T PRK06393 4 QYRACKKCKRLT----------P-EKTCPVHGDE 26 (64)
T ss_pred hhhhHhhCCccc----------C-CCcCCCCCCC
Confidence 467888888776 2 3499999874
No 190
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=22.72 E-value=33 Score=33.06 Aligned_cols=28 Identities=21% Similarity=0.525 Sum_probs=17.6
Q ss_pred eecCCCCCCcchhhhHhHHhcCCCCCCCccccccc
Q 003073 37 VACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (850)
Q Consensus 37 vAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr 71 (850)
.-|+.|+ ++++..+-...||+|+.+--+
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~CP~Cgs~~~~ 98 (115)
T TIGR00100 71 CECEDCS-------EEVSPEIDLYRCPKCHGIMLQ 98 (115)
T ss_pred EEcccCC-------CEEecCCcCccCcCCcCCCcE
Confidence 4466665 345554445779999976533
No 191
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=22.53 E-value=55 Score=27.43 Aligned_cols=26 Identities=31% Similarity=0.691 Sum_probs=17.0
Q ss_pred cccccCCC-cccCC-CCC-----ceeecCCCCC
Q 003073 19 VCQICGDN-VGKTV-DGN-----PFVACDVCAF 44 (850)
Q Consensus 19 ~C~iCgd~-Vg~~~-~Ge-----~FvAC~eC~F 44 (850)
-|.-||.. |.+.. .+. .+|-|++|+.
T Consensus 5 PCPFCG~~~~~~~~~~~~~~~~~~~V~C~~Cga 37 (61)
T PF14354_consen 5 PCPFCGSADVLIRQDEGFDYGMYYYVECTDCGA 37 (61)
T ss_pred CCCCCCCcceEeecccCCCCCCEEEEEcCCCCC
Confidence 59999865 33332 222 6888999876
No 192
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=22.49 E-value=58 Score=31.29 Aligned_cols=34 Identities=26% Similarity=0.687 Sum_probs=25.1
Q ss_pred CCCCceeecCCCCCC--cchhhhHhHHhcCCCCCCCccccccc
Q 003073 31 VDGNPFVACDVCAFP--VCRPCYEYERKDGNQSCPQCKTRYKK 71 (850)
Q Consensus 31 ~~Ge~FvAC~eC~Fp--VCRpCYEyERkeG~q~CPqCkt~Ykr 71 (850)
+-|-.-..|.+|+.- ++..| +|..||+|..++++
T Consensus 37 ~~G~~~~~C~~Cg~~~~~~~SC-------k~R~CP~C~~~~~~ 72 (111)
T PF14319_consen 37 ALGFHRYRCEDCGHEKIVYNSC-------KNRHCPSCQAKATE 72 (111)
T ss_pred cCCcceeecCCCCceEEecCcc-------cCcCCCCCCChHHH
Confidence 446677888888753 45555 47899999999964
No 193
>PF04724 Glyco_transf_17: Glycosyltransferase family 17; InterPro: IPR006813 This family represents beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (2.4.1.144 from EC). This enzyme transfers the bisecting GlcNAc to the core mannose of complex N-glycans. The addition of this residue is regulated during development and has functional consequences for receptor signalling, cell adhesion, and tumour progression [, ].; GO: 0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0016020 membrane
Probab=21.91 E-value=2.1e+02 Score=32.92 Aligned_cols=36 Identities=19% Similarity=0.397 Sum_probs=28.1
Q ss_pred hhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHH
Q 003073 536 GAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAM 573 (850)
Q Consensus 536 GnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv 573 (850)
.+|+.+++..+ +..+++|++-|+|-| |+|++|+.+-
T Consensus 165 ~~l~~l~~~~~-~~~dDliivSDvDEI-P~p~~l~~Lr 200 (356)
T PF04724_consen 165 NALNGLLRLAG-IQDDDLIIVSDVDEI-PSPETLKFLR 200 (356)
T ss_pred HHHHHHhhhcC-CCCCCEEEEcCcccc-cCHHHHHHHH
Confidence 45676776555 578999999999999 7898887663
No 194
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=21.85 E-value=75 Score=23.21 Aligned_cols=24 Identities=33% Similarity=0.960 Sum_probs=13.7
Q ss_pred ccccCCCcccCCCCCceeecCCCCC
Q 003073 20 CQICGDNVGKTVDGNPFVACDVCAF 44 (850)
Q Consensus 20 C~iCgd~Vg~~~~Ge~FvAC~eC~F 44 (850)
|..||-.|--.+.|..| .|..|+|
T Consensus 1 C~sC~~~i~~r~~~v~f-~CPnCG~ 24 (24)
T PF07754_consen 1 CTSCGRPIAPREQAVPF-PCPNCGF 24 (24)
T ss_pred CccCCCcccCcccCceE-eCCCCCC
Confidence 55676665444444444 4777775
No 195
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=21.80 E-value=63 Score=24.04 Aligned_cols=28 Identities=32% Similarity=0.898 Sum_probs=20.9
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhh
Q 003073 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPC 50 (850)
Q Consensus 19 ~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpC 50 (850)
.|.+|+.++ +|..|--|.+|.|-+..-|
T Consensus 2 ~C~~C~~~~----~~~~~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKI----DGFYFYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCc----CCCEeEEeCCCCCeEcCcc
Confidence 589998764 3433889999999876655
No 196
>PRK05582 DNA topoisomerase I; Validated
Probab=21.65 E-value=59 Score=39.87 Aligned_cols=51 Identities=31% Similarity=0.654 Sum_probs=30.5
Q ss_pred CccccccCCCccc--CCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccccccc
Q 003073 17 GQVCQICGDNVGK--TVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (850)
Q Consensus 17 ~~~C~iCgd~Vg~--~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr 71 (850)
...|..||..+-. ...| .|..|. +||-|+-.. ...++.++.||.|+.....
T Consensus 571 ~~~CP~Cg~~l~~~~~k~g-kf~~Cs--~~~~C~~~~-~~~~~~~~~CP~C~~~l~l 623 (650)
T PRK05582 571 GEDCPKCGSPMVIKMGRYG-KFIACS--NFPDCRNTK-PIVKEIGVKCPKCGGQIVE 623 (650)
T ss_pred CCCCCCCCCEeEEEecCCC-ceeecC--CccccccCC-CcccccCCCCCCCCCceEE
Confidence 3579999876542 2344 699996 444444221 1113446889999876543
No 197
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=21.56 E-value=39 Score=26.36 Aligned_cols=11 Identities=45% Similarity=1.440 Sum_probs=9.5
Q ss_pred CCCCccccccc
Q 003073 61 SCPQCKTRYKK 71 (850)
Q Consensus 61 ~CPqCkt~Ykr 71 (850)
.||.|+|.|+-
T Consensus 4 ~CP~C~~~f~v 14 (37)
T PF13719_consen 4 TCPNCQTRFRV 14 (37)
T ss_pred ECCCCCceEEc
Confidence 59999999963
No 198
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=21.40 E-value=1.2e+02 Score=34.42 Aligned_cols=59 Identities=20% Similarity=0.268 Sum_probs=36.2
Q ss_pred cccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhhHhHHHhhCCCCCCc
Q 003073 350 AVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAP 426 (850)
Q Consensus 350 ~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~WvPFCkk~~IepRaP 426 (850)
.||||+|.++ .+.++.--.... ..-+++.+ .++..|++-+..-.+|.. ||++++| |-.|
T Consensus 66 ~Idv~~P~~~-----~~~l~~~r~~F~-----a~Gv~l~~---~~~~~~l~~~~dK~~~y~----~~~~~~i-pvp~ 124 (329)
T PF15632_consen 66 GIDVFVPGRN-----RELLAAHRDEFE-----ALGVKLLT---ASSAETLELADDKAAFYE----FMEANGI-PVPP 124 (329)
T ss_pred CCeEEEcCcc-----HHHHHHHHHHHH-----HhCCEEEe---cCCHHHHHHHhhHHHHHH----HHHhCCC-CCCC
Confidence 5999999997 223333222222 22355555 344567777777666766 8899999 5544
No 199
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=21.07 E-value=58 Score=28.61 Aligned_cols=30 Identities=20% Similarity=0.605 Sum_probs=21.4
Q ss_pred cCCccccccCCCcccCCCCCceeecCCCCCCc
Q 003073 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPV 46 (850)
Q Consensus 15 ~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpV 46 (850)
.---+|.-||.+-.+. .|+ .+-|.||||-|
T Consensus 18 ~miYiCgdC~~en~lk-~~D-~irCReCG~RI 47 (62)
T KOG3507|consen 18 TMIYICGDCGQENTLK-RGD-VIRCRECGYRI 47 (62)
T ss_pred cEEEEecccccccccc-CCC-cEehhhcchHH
Confidence 3445899999886554 344 46899999976
No 200
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=20.97 E-value=22 Score=34.01 Aligned_cols=30 Identities=27% Similarity=0.598 Sum_probs=17.2
Q ss_pred eeecCCCCCCcchhhhHhHHhcCCCCCCCcccccccc
Q 003073 36 FVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (850)
Q Consensus 36 FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr~ 72 (850)
-+-|+.|+. +|+..+..-.||+|+.+..+.
T Consensus 70 ~~~C~~Cg~-------~~~~~~~~~~CP~Cgs~~~~i 99 (113)
T PF01155_consen 70 RARCRDCGH-------EFEPDEFDFSCPRCGSPDVEI 99 (113)
T ss_dssp EEEETTTS--------EEECHHCCHH-SSSSSS-EEE
T ss_pred cEECCCCCC-------EEecCCCCCCCcCCcCCCcEE
Confidence 355777764 344444446699999986543
No 201
>PRK07726 DNA topoisomerase III; Provisional
Probab=20.77 E-value=66 Score=39.59 Aligned_cols=46 Identities=28% Similarity=0.574 Sum_probs=30.1
Q ss_pred CccccccCCCccc--CCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccc
Q 003073 17 GQVCQICGDNVGK--TVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKT 67 (850)
Q Consensus 17 ~~~C~iCgd~Vg~--~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt 67 (850)
...|..||.++-. ...| -|..|.. |+.|+.+. ..++-++.||-|+.
T Consensus 610 ~~~CP~C~~~~~~~~~~~~-~f~~Cs~--~~~~~~~~--~~~~~~~~~~~~~~ 657 (658)
T PRK07726 610 GPKCPDCGKPMLKVKGKNG-KMLVCQD--RECGKRKN--VSKKTNARCPNCKK 657 (658)
T ss_pred cccccccCccceeecccCC-eeEecCC--Cccccccc--cccccCCCCCccCC
Confidence 4679999987542 2345 5899987 77665422 12344678999975
No 202
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=20.44 E-value=43 Score=26.11 Aligned_cols=10 Identities=40% Similarity=1.550 Sum_probs=9.0
Q ss_pred CCCCcccccc
Q 003073 61 SCPQCKTRYK 70 (850)
Q Consensus 61 ~CPqCkt~Yk 70 (850)
.||+|++.|.
T Consensus 4 ~Cp~C~~~y~ 13 (36)
T PF13717_consen 4 TCPNCQAKYE 13 (36)
T ss_pred ECCCCCCEEe
Confidence 5999999995
No 203
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=20.25 E-value=42 Score=31.61 Aligned_cols=40 Identities=25% Similarity=0.593 Sum_probs=24.5
Q ss_pred ccccCCCcccC-CCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccccc
Q 003073 20 CQICGDNVGKT-VDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 69 (850)
Q Consensus 20 C~iCgd~Vg~~-~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Y 69 (850)
|.+||...+.. ..-+.|.-+ ...+.|--|++ .||+|+..|
T Consensus 1 C~~C~~~~~~~~~~~~~~~~~-G~~~~v~~~~~---------~C~~CGe~~ 41 (127)
T TIGR03830 1 CPICGSGELVRDVKDEPYTYK-GESITIGVPGW---------YCPACGEEL 41 (127)
T ss_pred CCCCCCccceeeeecceEEEc-CEEEEEeeeee---------ECCCCCCEE
Confidence 89999654443 333345445 34555544444 699999887
No 204
>PRK03982 heat shock protein HtpX; Provisional
Probab=20.15 E-value=2.9e+02 Score=30.33 Aligned_cols=7 Identities=0% Similarity=-0.031 Sum_probs=4.0
Q ss_pred EEEEecC
Q 003073 386 SCYVSDD 392 (850)
Q Consensus 386 ~vyV~DD 392 (850)
+|||+|+
T Consensus 87 ~v~v~~~ 93 (288)
T PRK03982 87 KVAIVPT 93 (288)
T ss_pred eEEEEeC
Confidence 4666654
No 205
>COG1499 NMD3 NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis]
Probab=20.02 E-value=60 Score=37.32 Aligned_cols=43 Identities=30% Similarity=0.765 Sum_probs=25.8
Q ss_pred ccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHh------cC--CCCCCCccccc
Q 003073 14 NVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERK------DG--NQSCPQCKTRY 69 (850)
Q Consensus 14 ~~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERk------eG--~q~CPqCkt~Y 69 (850)
..+...|--||..+--..+| +|..|| .++. ++ --.|++|+..+
T Consensus 3 ~~~~~~C~~CGr~~~~~~~~------------lC~dC~-~~~~~~~~ip~~~~v~~C~~Cga~~ 53 (355)
T COG1499 3 DASTILCVRCGRSVDPLIDG------------LCGDCY-VETTPLIEIPDEVNVEVCRHCGAYR 53 (355)
T ss_pred CCcccEeccCCCcCchhhcc------------ccHHHH-hccCccccCCCceEEEECCcCCCcc
Confidence 34556777777776522222 599999 4422 11 15799999333
Done!