Query 003073
Match_columns 850
No_of_seqs 373 out of 1615
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 12:19:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003073.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003073hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1weo_A Cellulose synthase, cat 100.0 1.7E-45 5.9E-50 326.0 9.1 90 3-93 2-91 (93)
2 4hg6_A Cellulose synthase subu 100.0 1.1E-39 3.8E-44 385.9 28.0 332 270-848 64-411 (802)
3 2z86_A Chondroitin synthase; G 99.7 3.3E-16 1.1E-20 178.3 16.4 128 345-597 89-217 (625)
4 1xhb_A Polypeptide N-acetylgal 99.7 1.4E-15 4.7E-20 167.8 18.0 116 345-579 25-143 (472)
5 3bcv_A Putative glycosyltransf 99.7 9.2E-16 3.2E-20 151.6 14.8 110 347-579 3-112 (240)
6 2d7i_A Polypeptide N-acetylgal 99.6 1.9E-15 6.7E-20 172.4 14.9 115 346-579 109-224 (570)
7 1qg8_A Protein (spore coat pol 99.6 3.6E-16 1.2E-20 156.2 6.8 124 349-595 1-129 (255)
8 2ffu_A Ppgalnact-2, polypeptid 99.6 2.1E-15 7.2E-20 168.2 12.4 113 345-579 62-174 (501)
9 2z86_A Chondroitin synthase; G 99.6 6E-15 2.1E-19 167.9 12.3 124 346-596 372-496 (625)
10 3ckj_A Putative uncharacterize 99.3 2.9E-12 9.8E-17 136.0 10.5 124 347-592 46-170 (329)
11 3l7i_A Teichoic acid biosynthe 99.3 3.1E-13 1.1E-17 157.9 0.0 110 349-579 2-111 (729)
12 4fix_A UDP-galactofuranosyl tr 99.3 1.8E-11 6.3E-16 142.9 12.8 48 345-396 176-224 (657)
13 2fy7_A Beta-1,4-galactosyltran 98.9 7.6E-10 2.6E-14 117.2 7.6 53 777-829 201-263 (287)
14 3f1y_A Mannosyl-3-phosphoglyce 98.9 5.2E-09 1.8E-13 115.1 10.7 51 347-402 92-144 (387)
15 2nxv_A ATP synthase subunits r 98.4 1.3E-06 4.4E-11 89.2 12.4 46 535-589 63-113 (249)
16 2bo4_A Mannosylglycerate synth 97.6 0.00032 1.1E-08 77.8 12.4 46 532-577 74-119 (397)
17 1fo8_A Alpha-1,3-mannosyl-glyc 97.2 0.00039 1.3E-08 75.8 7.2 44 348-396 1-44 (343)
18 2zu9_A Mannosyl-3-phosphoglyce 97.1 0.0013 4.6E-08 73.0 10.2 40 532-574 143-182 (394)
19 2wvl_A Mannosyl-3-phosphoglyce 96.8 0.0035 1.2E-07 69.1 9.6 43 348-399 52-94 (391)
20 1e4u_A Transcriptional repress 96.4 0.0045 1.5E-07 53.8 6.0 53 16-71 10-62 (78)
21 1vyx_A ORF K3, K3RING; zinc-bi 87.6 0.47 1.6E-05 39.2 3.9 51 15-70 4-58 (60)
22 2ea6_A Ring finger protein 4; 87.3 0.64 2.2E-05 37.6 4.5 55 15-71 13-68 (69)
23 3ng2_A RNF4, snurf, ring finge 86.3 0.32 1.1E-05 39.7 2.3 56 13-70 6-62 (71)
24 2d8s_A Cellular modulator of i 85.8 0.9 3.1E-05 39.5 5.0 57 12-71 10-70 (80)
25 1g25_A CDK-activating kinase a 85.2 0.73 2.5E-05 37.4 3.9 53 17-71 3-55 (65)
26 1t1h_A Gspef-atpub14, armadill 85.1 0.6 2.1E-05 39.1 3.4 48 16-70 7-54 (78)
27 2ckl_B Ubiquitin ligase protei 84.9 0.63 2.1E-05 44.7 3.8 48 18-71 55-102 (165)
28 2kiz_A E3 ubiquitin-protein li 84.3 1.6 5.5E-05 35.6 5.6 53 15-72 12-64 (69)
29 2ect_A Ring finger protein 126 83.3 2.8 9.7E-05 34.9 6.8 53 15-72 13-65 (78)
30 2xeu_A Ring finger protein 4; 83.2 0.43 1.5E-05 38.0 1.6 53 17-71 3-56 (64)
31 2ysl_A Tripartite motif-contai 82.7 0.99 3.4E-05 37.1 3.7 49 16-71 19-69 (73)
32 1iym_A EL5; ring-H2 finger, ub 82.6 1.6 5.4E-05 33.9 4.6 50 16-69 4-53 (55)
33 2ecm_A Ring finger and CHY zin 81.6 1.5 5.2E-05 34.0 4.2 50 16-69 4-53 (55)
34 3fl2_A E3 ubiquitin-protein li 81.3 1.1 3.7E-05 41.0 3.8 47 18-71 53-99 (124)
35 1v87_A Deltex protein 2; ring- 80.5 1.6 5.6E-05 39.0 4.6 61 15-75 23-98 (114)
36 2ecy_A TNF receptor-associated 79.9 1.3 4.3E-05 36.1 3.3 49 16-71 14-62 (66)
37 2ecv_A Tripartite motif-contai 79.0 3.2 0.00011 34.5 5.7 49 16-71 18-71 (85)
38 2ecw_A Tripartite motif-contai 77.7 4.1 0.00014 33.9 6.0 49 16-71 18-71 (85)
39 2ct2_A Tripartite motif protei 77.3 2.5 8.4E-05 35.8 4.5 53 16-71 14-68 (88)
40 2zet_C Melanophilin; complex, 77.0 0.56 1.9E-05 45.9 0.4 52 15-68 66-117 (153)
41 2f42_A STIP1 homology and U-bo 76.4 1.7 5.7E-05 43.5 3.6 48 16-70 105-152 (179)
42 2c2l_A CHIP, carboxy terminus 76.2 2.5 8.6E-05 42.8 5.0 49 15-70 206-254 (281)
43 3hct_A TNF receptor-associated 75.2 2.6 8.9E-05 38.3 4.3 47 17-70 18-64 (118)
44 3lrq_A E3 ubiquitin-protein li 74.5 2.5 8.5E-05 37.5 3.9 48 17-70 22-69 (100)
45 3l11_A E3 ubiquitin-protein li 74.0 1.4 4.8E-05 39.7 2.2 48 17-71 15-62 (115)
46 1chc_A Equine herpes virus-1 r 70.1 4.9 0.00017 32.5 4.4 50 16-72 4-53 (68)
47 2y43_A E3 ubiquitin-protein li 69.6 3.9 0.00014 35.7 4.0 48 17-71 22-69 (99)
48 2ep4_A Ring finger protein 24; 67.7 7.3 0.00025 32.0 5.1 52 15-71 13-64 (74)
49 2djb_A Polycomb group ring fin 67.2 12 0.00039 30.8 6.2 49 16-71 14-62 (72)
50 1z6u_A NP95-like ring finger p 66.3 4.3 0.00015 38.9 3.8 46 18-70 79-124 (150)
51 1x4j_A Ring finger protein 38; 66.1 3 0.0001 34.6 2.4 53 15-72 21-73 (75)
52 2kre_A Ubiquitin conjugation f 65.4 3.8 0.00013 36.8 3.1 47 16-70 28-74 (100)
53 2kr4_A Ubiquitin conjugation f 64.9 4.1 0.00014 35.3 3.1 47 16-70 13-59 (85)
54 3ztg_A E3 ubiquitin-protein li 64.7 6.6 0.00022 33.7 4.4 49 16-70 12-61 (92)
55 2l0b_A E3 ubiquitin-protein li 64.7 4 0.00014 35.5 3.0 50 16-70 39-88 (91)
56 3hcs_A TNF receptor-associated 64.1 4.9 0.00017 38.5 3.8 47 17-70 18-64 (170)
57 2ysj_A Tripartite motif-contai 64.1 12 0.0004 29.9 5.5 43 16-65 19-63 (63)
58 2ecl_A Ring-box protein 2; RNF 64.0 6.2 0.00021 33.6 4.0 56 15-71 13-76 (81)
59 2csy_A Zinc finger protein 183 63.4 10 0.00035 31.8 5.3 47 16-70 14-60 (81)
60 1jm7_A BRCA1, breast cancer ty 63.0 6 0.00021 34.9 3.9 47 17-70 21-69 (112)
61 3vk6_A E3 ubiquitin-protein li 62.8 4.3 0.00015 37.4 2.9 48 19-72 3-50 (101)
62 2ckl_A Polycomb group ring fin 62.0 5.9 0.0002 35.2 3.7 48 17-71 15-62 (108)
63 4ayc_A E3 ubiquitin-protein li 61.6 5.5 0.00019 37.2 3.5 44 19-70 55-98 (138)
64 1jm7_B BARD1, BRCA1-associated 61.1 5.9 0.0002 35.9 3.6 45 17-70 22-66 (117)
65 1zbd_B Rabphilin-3A; G protein 60.5 4.9 0.00017 38.4 3.0 39 14-54 52-90 (134)
66 1rmd_A RAG1; V(D)J recombinati 59.5 7.4 0.00025 34.9 3.9 48 17-71 23-70 (116)
67 2yur_A Retinoblastoma-binding 58.8 8.9 0.0003 31.8 4.0 50 16-71 14-64 (74)
68 2egp_A Tripartite motif-contai 58.6 3.4 0.00012 34.3 1.4 49 16-71 11-65 (79)
69 1wgm_A Ubiquitin conjugation f 57.6 6.9 0.00024 35.0 3.3 46 17-70 22-68 (98)
70 2jny_A Uncharacterized BCR; st 57.1 1.8 6.2E-05 37.0 -0.6 41 36-81 10-50 (67)
71 4ap4_A E3 ubiquitin ligase RNF 56.5 4.4 0.00015 36.4 1.9 56 14-71 69-125 (133)
72 3ky9_A Proto-oncogene VAV; cal 55.3 6.1 0.00021 45.4 3.2 38 13-53 525-563 (587)
73 2d8t_A Dactylidin, ring finger 55.3 11 0.00037 30.9 3.9 50 14-71 12-61 (71)
74 2ecn_A Ring finger protein 141 55.0 9.4 0.00032 31.0 3.5 48 16-72 14-61 (70)
75 1bor_A Transcription factor PM 53.1 14 0.00048 29.2 4.1 46 16-72 5-50 (56)
76 3dpl_R Ring-box protein 1; ubi 52.3 13 0.00043 33.9 4.2 55 15-70 35-100 (106)
77 3h0g_L DNA-directed RNA polyme 52.0 7.9 0.00027 32.8 2.5 30 15-46 19-48 (63)
78 2csz_A Synaptotagmin-like prot 51.3 11 0.00037 33.1 3.4 41 14-56 22-62 (76)
79 3nw0_A Non-structural maintena 49.4 11 0.00039 38.9 3.8 48 17-70 180-228 (238)
80 2vrw_B P95VAV, VAV1, proto-onc 49.3 8.6 0.00029 41.7 3.0 38 12-52 352-390 (406)
81 2k16_A Transcription initiatio 48.9 7.3 0.00025 32.9 1.9 54 15-72 16-72 (75)
82 2js4_A UPF0434 protein BB2007; 48.8 2.1 7.1E-05 36.9 -1.5 41 36-81 8-48 (70)
83 2ea5_A Cell growth regulator w 48.6 12 0.00042 31.1 3.2 46 14-71 12-58 (68)
84 2y1n_A E3 ubiquitin-protein li 48.0 11 0.00039 41.8 3.7 47 18-71 333-379 (389)
85 2dj7_A Actin-binding LIM prote 46.6 10 0.00036 32.2 2.5 53 9-64 7-67 (80)
86 4ap4_A E3 ubiquitin ligase RNF 46.4 7.6 0.00026 34.8 1.7 54 16-71 6-60 (133)
87 3vth_A Hydrogenase maturation 45.9 8.2 0.00028 46.4 2.4 58 14-71 108-195 (761)
88 2vje_A E3 ubiquitin-protein li 44.1 10 0.00036 31.0 2.1 53 12-70 3-56 (64)
89 3knv_A TNF receptor-associated 42.3 8.8 0.0003 36.4 1.5 46 17-69 31-76 (141)
90 2ecg_A Baculoviral IAP repeat- 42.2 15 0.0005 30.7 2.7 43 17-71 25-68 (75)
91 2ku3_A Bromodomain-containing 41.3 11 0.00037 32.2 1.8 53 14-68 13-66 (71)
92 3v43_A Histone acetyltransfera 41.3 25 0.00084 32.1 4.3 52 17-68 5-64 (112)
93 2l5u_A Chromodomain-helicase-D 40.5 21 0.00071 29.4 3.3 49 12-67 6-57 (61)
94 1xwh_A Autoimmune regulator; P 40.3 14 0.00047 30.8 2.2 49 13-68 4-55 (66)
95 2ecj_A Tripartite motif-contai 40.2 44 0.0015 25.6 5.1 43 16-65 14-58 (58)
96 2co8_A NEDD9 interacting prote 39.5 25 0.00086 29.8 3.9 64 10-76 8-79 (82)
97 1wew_A DNA-binding family prot 38.1 22 0.00074 30.6 3.2 56 10-70 9-74 (78)
98 2d8y_A Eplin protein; LIM doma 37.9 55 0.0019 28.0 5.8 37 9-45 7-51 (91)
99 1tot_A CREB-binding protein; z 37.8 12 0.00042 30.2 1.5 32 17-54 6-38 (52)
100 1m3v_A FLIN4, fusion of the LI 37.7 24 0.00083 32.1 3.7 53 16-70 4-80 (122)
101 2xjy_A Rhombotin-2; oncoprotei 35.6 20 0.0007 32.6 2.8 24 44-69 52-76 (131)
102 3a43_A HYPD, hydrogenase nicke 35.5 7.8 0.00027 37.0 -0.0 13 59-71 107-119 (139)
103 4g9i_A Hydrogenase maturation 34.9 14 0.00048 44.4 2.0 59 14-72 103-191 (772)
104 1wev_A Riken cDNA 1110020M19; 34.3 12 0.0004 33.1 1.0 57 13-71 12-75 (88)
105 2l43_A N-teminal domain from h 33.7 21 0.00072 31.6 2.5 53 15-69 23-76 (88)
106 1we9_A PHD finger family prote 33.2 21 0.00071 29.2 2.2 54 16-72 5-62 (64)
107 2ct0_A Non-SMC element 1 homol 33.1 52 0.0018 28.3 4.8 50 15-70 13-63 (74)
108 1m4f_A Hepcidin; strand-loop-s 32.8 4.1 0.00014 29.1 -1.8 23 43-67 3-25 (26)
109 1wim_A KIAA0161 protein; ring 32.7 25 0.00085 30.5 2.7 49 17-69 5-62 (94)
110 2hf1_A Tetraacyldisaccharide-1 32.6 2.6 8.8E-05 36.1 -3.5 41 36-81 8-48 (68)
111 4ic3_A E3 ubiquitin-protein li 31.8 25 0.00086 29.3 2.6 43 17-71 24-67 (74)
112 2cor_A Pinch protein; LIM doma 31.8 34 0.0011 28.8 3.4 38 12-49 10-54 (79)
113 1twf_L ABC10-alpha, DNA-direct 31.5 19 0.00066 30.9 1.8 12 19-30 30-41 (70)
114 2gai_A DNA topoisomerase I; zi 31.5 9.8 0.00034 44.7 -0.1 45 19-68 574-621 (633)
115 1mm2_A MI2-beta; PHD, zinc fin 31.1 29 0.00099 28.5 2.7 47 15-68 7-56 (61)
116 3t6p_A Baculoviral IAP repeat- 31.0 21 0.00073 38.9 2.5 43 17-71 295-338 (345)
117 3t7l_A Zinc finger FYVE domain 31.0 47 0.0016 29.3 4.3 57 11-70 14-75 (90)
118 2cup_A Skeletal muscle LIM-pro 30.3 27 0.00093 30.3 2.6 52 15-69 3-76 (101)
119 3lqh_A Histone-lysine N-methyl 29.8 29 0.00099 34.7 3.0 54 16-69 1-64 (183)
120 1f62_A Transcription factor WS 29.0 34 0.0011 26.7 2.7 45 19-67 2-49 (51)
121 3htk_C E3 SUMO-protein ligase 28.8 27 0.00091 37.2 2.6 50 15-70 179-231 (267)
122 2lri_C Autoimmune regulator; Z 28.6 40 0.0014 28.3 3.2 45 16-67 11-58 (66)
123 2yu4_A E3 SUMO-protein ligase 28.4 39 0.0014 29.4 3.3 46 17-68 7-59 (94)
124 1rut_X Flinc4, fusion protein 28.1 41 0.0014 32.8 3.8 53 15-69 3-79 (188)
125 2gmg_A Hypothetical protein PF 27.9 20 0.00067 33.3 1.3 25 38-68 69-93 (105)
126 2vje_B MDM4 protein; proto-onc 27.6 29 0.001 28.1 2.2 48 16-71 6-56 (63)
127 4a0k_B E3 ubiquitin-protein li 27.4 15 0.00051 34.2 0.4 54 16-70 47-111 (117)
128 2jr6_A UPF0434 protein NMA0874 26.6 4.2 0.00014 34.8 -3.2 37 45-81 12-48 (68)
129 1x61_A Thyroid receptor intera 25.8 59 0.002 26.3 3.8 29 15-43 3-40 (72)
130 3q80_A 2-C-methyl-D-erythritol 25.7 81 0.0028 31.8 5.5 28 551-578 100-127 (231)
131 2xqn_T Testin, TESS; metal-bin 25.0 52 0.0018 29.7 3.6 24 43-69 50-73 (126)
132 2puy_A PHD finger protein 21A; 24.8 22 0.00074 29.0 0.9 50 15-71 3-55 (60)
133 1dl6_A Transcription factor II 23.7 52 0.0018 27.0 3.0 14 56-69 27-40 (58)
134 2ksl_A U1-agatoxin-TA1A; insec 23.3 2.5 8.5E-05 33.3 -4.7 25 17-41 20-48 (51)
135 1x63_A Skeletal muscle LIM-pro 23.2 38 0.0013 28.2 2.2 30 15-44 13-51 (82)
136 2kdx_A HYPA, hydrogenase/ureas 23.2 16 0.00055 33.7 -0.2 31 35-72 72-103 (119)
137 3ttc_A HYPF, transcriptional r 23.1 22 0.00074 42.1 0.8 58 13-70 13-100 (657)
138 1wge_A Hypothetical protein 26 22.8 29 0.00099 30.8 1.4 27 19-46 32-62 (83)
139 1wee_A PHD finger family prote 22.6 41 0.0014 28.3 2.2 51 16-70 15-68 (72)
140 1wen_A Inhibitor of growth fam 22.4 1.1E+02 0.0037 26.0 4.8 60 9-74 8-71 (71)
141 1x4l_A Skeletal muscle LIM-pro 22.0 72 0.0025 25.9 3.6 14 16-29 4-17 (72)
142 2e72_A POGO transposable eleme 22.0 29 0.00098 28.1 1.0 15 58-72 11-25 (49)
143 2ysm_A Myeloid/lymphoid or mix 21.8 55 0.0019 29.4 3.1 50 14-67 4-56 (111)
144 2jr7_A DPH3 homolog; DESR1, CS 21.5 22 0.00076 32.0 0.3 27 19-46 25-55 (89)
145 2yho_A E3 ubiquitin-protein li 20.9 43 0.0015 28.5 2.0 43 17-71 18-61 (79)
146 1wem_A Death associated transc 20.8 68 0.0023 27.1 3.3 52 14-70 13-72 (76)
147 3e2i_A Thymidine kinase; Zn-bi 20.7 9.2 0.00031 39.4 -2.6 37 18-54 163-210 (219)
148 1g47_A Pinch protein; LIM doma 20.3 40 0.0014 27.7 1.7 32 14-45 8-48 (77)
149 1lko_A Rubrerythrin all-iron(I 20.3 19 0.00066 35.8 -0.4 27 36-69 155-181 (191)
150 1yop_A KTI11P; zinc finger, me 20.3 25 0.00087 31.2 0.4 27 19-46 25-55 (83)
151 2kwj_A Zinc finger protein DPF 20.1 74 0.0025 29.0 3.6 49 18-66 2-59 (114)
No 1
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=100.00 E-value=1.7e-45 Score=326.01 Aligned_cols=90 Identities=60% Similarity=1.279 Sum_probs=85.3
Q ss_pred CCCCCCCccccccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccccccccCCCCcccCCC
Q 003073 3 SEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDR 82 (850)
Q Consensus 3 ~~~~~~~k~~~~~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr~kGs~rv~gd~ 82 (850)
+.|.+++|||+++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+||
T Consensus 2 ~~g~~~~kp~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~kgsp~v~GD- 80 (93)
T 1weo_A 2 SSGSSGPKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRVEGD- 80 (93)
T ss_dssp CCSSSSSSCCSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCCCCTTS-
T ss_pred CCCCCCCCcccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccccCCCCcccc-
Confidence 4577779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCCCCC
Q 003073 83 EEDGDADDGAS 93 (850)
Q Consensus 83 e~e~~~dd~~~ 93 (850)
|+|+++||+++
T Consensus 81 e~e~d~dD~~~ 91 (93)
T 1weo_A 81 EDEEDIDSGPS 91 (93)
T ss_dssp CCCCCSCCCCS
T ss_pred ccccccccccc
Confidence 77788899874
No 2
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=100.00 E-value=1.1e-39 Score=385.88 Aligned_cols=332 Identities=25% Similarity=0.425 Sum_probs=267.9
Q ss_pred hhHH-HHHHHHHHHHHHHHhhhcccccc-----hHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHhhhhhccCC
Q 003073 270 PYRM-VIFLRLIILGIFLYYRIKNPVHN-----AIALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREG 343 (850)
Q Consensus 270 ~yR~-~i~~~l~~~~~yl~wRi~~~~~~-----a~~lWl~~vi~Ei~fa~~wiL~q~~kw~Pv~R~~~~drL~~r~e~~~ 343 (850)
+.|+ ++++.++++++|++||++.+++. ++++|++++++|+++.+.|++..+..+.|..|...++ .
T Consensus 64 ~~~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~~~~~~~~r~~~~~---------~ 134 (802)
T 4hg6_A 64 VPRFLLLSAASMLVMRYWFWRLFETLPPPALDASFLFALLLFAVETFSISIFFLNGFLSADPTDRPFPRP---------L 134 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCC---------C
T ss_pred chHHHHHHHHHHHHHHHHHHHhheecCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC---------C
Confidence 3455 45567888899999999988763 3567888999999999999999999999998865432 2
Q ss_pred CCCCCCcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhhHhHHHhhCCCC
Q 003073 344 EPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEP 423 (850)
Q Consensus 344 ~~~~lP~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~WvPFCkk~~Iep 423 (850)
.++.+|.|+|+||||| |++.++.+||.|+++++||.++++|+|+|||+++.|.+..
T Consensus 135 ~~~~~P~VSViIPtyN---e~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~~--------------------- 190 (802)
T 4hg6_A 135 QPEELPTVDILVPSYN---EPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSP--------------------- 190 (802)
T ss_dssp CTTTCCCEEEEEECTT---CCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTCS---------------------
T ss_pred CccCCCcEEEEEEECC---CCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCccccccC---------------------
Confidence 3567899999999999 9999999999999999999999999999999998665420
Q ss_pred CCchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeec
Q 003073 424 RAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLG 503 (850)
Q Consensus 424 RaPe~YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~rdhp~~iqV~l~ 503 (850)
.|+.+++..+ .++ .++.+..+
T Consensus 191 ------------------d~~i~~~~~~---~~~----~l~~~~~~---------------------------------- 211 (802)
T 4hg6_A 191 ------------------DPELAQKAQE---RRR----ELQQLCRE---------------------------------- 211 (802)
T ss_dssp ------------------SHHHHHHHHH---HHH----HHHHHHHH----------------------------------
T ss_pred ------------------CHHHHHHHHh---hhH----HHHHHHHh----------------------------------
Confidence 1122211111 111 12222211
Q ss_pred cCCCCCCCCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhh-cCCCCC
Q 003073 504 ENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLG 582 (850)
Q Consensus 504 ~~G~~d~~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF-~DP~~G 582 (850)
.++.|+.|++ ++++|+||+|.+++ .+++|||+++|||++ +.|++|++++.+| .||
T Consensus 212 ------------~~v~~i~~~~----~~~GKa~alN~gl~----~a~gd~Il~lDaD~~-~~pd~L~~lv~~~~~dp--- 267 (802)
T 4hg6_A 212 ------------LGVVYSTRER----NEHAKAGNMSAALE----RLKGELVVVFDADHV-PSRDFLARTVGYFVEDP--- 267 (802)
T ss_dssp ------------HTCEEEECSS----CCSHHHHHHHHHHH----HCCCSEEEECCTTEE-ECTTHHHHHHHHHHHSS---
T ss_pred ------------cCcEEEEecC----CCCcchHHHHHHHH----hcCCCEEEEECCCCC-cChHHHHHHHHHHhcCC---
Confidence 0277888886 56799999999999 579999999999999 5799999999999 688
Q ss_pred cceEEEeccccccCCCcc-------ccccchhHHHHhhhhccccCCCCccccccchhhhhhhhcCCCCCCCCCCCCCCCc
Q 003073 583 KHVCYVQFPQRFDGIDRN-------DRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLL 655 (850)
Q Consensus 583 ~~v~~VQtPQrF~~id~~-------Dryan~~~vFfdi~~~glDgiqgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~ 655 (850)
++++||+|+.|.+.++. .++.+.+..||....++.+.+++++++|++++|||++|.
T Consensus 268 -~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~---------------- 330 (802)
T 4hg6_A 268 -DLFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAFFCGSAAVLRRRALD---------------- 330 (802)
T ss_dssp -SCCEEECCCCBSSCCHHHHHHTCCTTSCCTTHHHHHTHHHHHHHTTCCCCCSSSEEEEHHHHH----------------
T ss_pred -CeEEEeccEEEeCCchHhhhhhHHhhhhHHHHHHHHHHHhhHhhcCCceecccchhhhHHHHH----------------
Confidence 89999999999987632 456677889999999999999999999999999999982
Q ss_pred ccccCCCccccCCcCccCCccccCCCCCCCCCccccchhhhhcccCCCCchhhHHHhhhhHHHHhhcchHHHHHhHhhhc
Q 003073 656 SSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMEN 735 (850)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~ 735 (850)
++
T Consensus 331 ------------------------------------------------------------------------------~v 332 (802)
T 4hg6_A 331 ------------------------------------------------------------------------------EA 332 (802)
T ss_dssp ------------------------------------------------------------------------------HH
T ss_pred ------------------------------------------------------------------------------Hc
Confidence 35
Q ss_pred CCCCCCcchhhHHHHhhhhccccccccCccccccceeecccchhHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHH
Q 003073 736 GGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRL 815 (850)
Q Consensus 736 GG~p~~~~~~~~l~eai~v~sC~YE~~T~WG~evGW~y~SITEDi~Tg~rLh~rGwRsvY~~p~~aaf~G~aP~tls~~l 815 (850)
||++ ..+++||.+++++|+++||+++|++.... ++.+|+|+++++
T Consensus 333 Ggf~---------------------------------~~~~~ED~~l~~rl~~~G~ri~~~~~~~~--~~~~p~t~~~~~ 377 (802)
T 4hg6_A 333 GGFA---------------------------------GETITEDAETALEIHSRGWKSLYIDRAMI--AGLQPETFASFI 377 (802)
T ss_dssp TTCC---------------------------------CSSSSHHHHHHHHHHTTTCCEEECCCCCE--EECCCCSHHHHH
T ss_pred CCcC---------------------------------CCCcchHHHHHHHHHHcCCeEEEecCCEE--EecCCCCHHHHH
Confidence 7654 35788999999999999999999976444 899999999999
Q ss_pred HHHHHHhhhhHHHHHhhcCccccC--Ccccccccc
Q 003073 816 NQVLRWALGSVEILFSRHCPICCL--SINEQVHYA 848 (850)
Q Consensus 816 kQR~RWA~G~lQIllsr~~Pl~~G--~l~~~~~y~ 848 (850)
+||.||++|.+|+++.+ +|++.. .+.+|++|.
T Consensus 378 ~Qr~RW~~G~~q~l~~~-~pl~~~~l~~~~rl~~l 411 (802)
T 4hg6_A 378 QQRGRWATGMMQMLLLK-NPLFRRGLGIAQRLCYL 411 (802)
T ss_dssp HHHHHHHHHHHHHHHHS-CTTSCSSCCHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHh-CccccCCCCHHHHHHHH
Confidence 99999999999999874 677653 456787774
No 3
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=99.67 E-value=3.3e-16 Score=178.28 Aligned_cols=128 Identities=19% Similarity=0.198 Sum_probs=99.9
Q ss_pred CCCCCcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhhHhHHHhhCCCCC
Q 003073 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPR 424 (850)
Q Consensus 345 ~~~lP~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~WvPFCkk~~IepR 424 (850)
+...|.|+|+||||| |+ ..+.+||.|++.+.||. .++|+|+|||+++.|.+.+.+
T Consensus 89 ~~~~p~vsviIp~~n---~~-~~l~~~l~sl~~q~~~~-~~eiivvDd~s~d~t~~~~~~-------------------- 143 (625)
T 2z86_A 89 QLIIDGLSIVIPTYN---RA-KILAITLACLCNQKTIY-DYEVIVADDGSKENIEEIVRE-------------------- 143 (625)
T ss_dssp -CCCCCEEEEEEESS---CH-HHHHHHHHHHHTCCCSS-CEEEEEEEESCSSCHHHHHHT--------------------
T ss_pred cccCCcEEEEEecCC---cH-HHHHHHHHHHHhhccCC-CeEEEEEeCCCchhHHHHHHH--------------------
Confidence 456899999999999 75 89999999999999985 799999999998854332211
Q ss_pred CchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeecc
Q 003073 425 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 504 (850)
Q Consensus 425 aPe~YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~rdhp~~iqV~l~~ 504 (850)
+.
T Consensus 144 -----------------------------------------~~------------------------------------- 145 (625)
T 2z86_A 144 -----------------------------------------FE------------------------------------- 145 (625)
T ss_dssp -----------------------------------------TT-------------------------------------
T ss_pred -----------------------------------------hh-------------------------------------
Confidence 00
Q ss_pred CCCCCCCCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhc-CCCCCc
Q 003073 505 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DPNLGK 583 (850)
Q Consensus 505 ~G~~d~~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~-DP~~G~ 583 (850)
.-+++.|+.+++ ..++|++|+|.+++ .++|+||+++|+|.++ .|++|.+++.+|. +|
T Consensus 146 ---------~~~~i~~i~~~~----~~~g~~~a~N~g~~----~a~g~~v~~lD~D~~~-~~~~l~~~~~~~~~~~---- 203 (625)
T 2z86_A 146 ---------SLLNIKYVRQKD----YGYQLCAVRNLGLR----AAKYNYVAILDCDMAP-NPLWVQSYMELLAVDD---- 203 (625)
T ss_dssp ---------TTSCEEEEEECC----CSCCHHHHHHHHHH----HCCSSEEEEECTTEEE-CTTHHHHHHHHHHHCT----
T ss_pred ---------hcCCeEEEEeCC----CCcchhHHHHHHHH----hCCcCEEEEECCCCCC-CHHHHHHHHHHHhcCC----
Confidence 002377777653 23579999999998 5799999999999994 8999999999885 56
Q ss_pred ceEEEeccccccCC
Q 003073 584 HVCYVQFPQRFDGI 597 (850)
Q Consensus 584 ~v~~VQtPQrF~~i 597 (850)
.+++|+..+.+++.
T Consensus 204 ~~~~~g~~~~~~~~ 217 (625)
T 2z86_A 204 NVALIGPRKYIDTS 217 (625)
T ss_dssp TEEEECCEEEECCT
T ss_pred ceEEEEeeeeccCc
Confidence 68888877666543
No 4
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=99.66 E-value=1.4e-15 Score=167.83 Aligned_cols=116 Identities=16% Similarity=0.103 Sum_probs=92.3
Q ss_pred CCCCCcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchh-hHHHHHhhHHhhhhhHhHHHhhCCCC
Q 003073 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAML-TFEALSETSEFARKWVPFCKKYNIEP 423 (850)
Q Consensus 345 ~~~lP~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~-T~e~L~Ea~~FA~~WvPFCkk~~Iep 423 (850)
+..+|.|+|+||+|| |+...+.+||.|++++.||...++|+|+|||+++. |.+.|.+
T Consensus 25 ~~~~p~vSVIIp~yN---~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~------------------- 82 (472)
T 1xhb_A 25 PDNLPTTSVVIVFHN---EAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLES------------------- 82 (472)
T ss_dssp CSCCCCEEEEEEESS---CCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHH-------------------
T ss_pred CcCCCCeEEEEEeCC---CCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHH-------------------
Confidence 357899999999999 88789999999999999996568999999999873 4433322
Q ss_pred CCchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeec
Q 003073 424 RAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLG 503 (850)
Q Consensus 424 RaPe~YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~rdhp~~iqV~l~ 503 (850)
+.+
T Consensus 83 ------------------------------------------~~~----------------------------------- 85 (472)
T 1xhb_A 83 ------------------------------------------YVK----------------------------------- 85 (472)
T ss_dssp ------------------------------------------HHH-----------------------------------
T ss_pred ------------------------------------------HHH-----------------------------------
Confidence 100
Q ss_pred cCCCCCCCCCCCC-cEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhc-CC
Q 003073 504 ENGGLDAEGNELP-RLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DP 579 (850)
Q Consensus 504 ~~G~~d~~~~~lP-~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~-DP 579 (850)
.+| ++.++..+++. ++++|+|.+++ .+.|+||+++|+|.+ ..|++|.+++.+|. +|
T Consensus 86 ----------~~~~~v~vi~~~~n~-----G~~~a~N~g~~----~A~gd~i~flD~D~~-~~p~~L~~ll~~~~~~~ 143 (472)
T 1xhb_A 86 ----------KLKVPVHVIRMEQRS-----GLIRARLKGAA----VSRGQVITFLDAHCE-CTAGWLEPLLARIKHDR 143 (472)
T ss_dssp ----------SSSSCEEEEECSSCC-----CHHHHHHHHHH----HCCSSEEEEEESSEE-ECTTCHHHHHHHHHHCT
T ss_pred ----------HCCCcEEEEECCCCC-----ChHHHHHHHHH----hccCCeEEEECCCeE-eCccHHHHHHHHHHhCC
Confidence 013 46777766543 59999999999 578999999999999 57999999999885 45
No 5
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=99.65 E-value=9.2e-16 Score=151.60 Aligned_cols=110 Identities=15% Similarity=0.175 Sum_probs=87.7
Q ss_pred CCCcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhhHhHHHhhCCCCCCc
Q 003073 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAP 426 (850)
Q Consensus 347 ~lP~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~WvPFCkk~~IepRaP 426 (850)
..|.|+|+||+|| ++ ..+.++|.|++++.|| .++|+|+|||+++.|.+.+.+.
T Consensus 3 ~~p~vsViIp~yn---~~-~~l~~~l~Sl~~q~~~--~~eiIvvDd~S~d~t~~~~~~~--------------------- 55 (240)
T 3bcv_A 3 LIPKVSVIVPIYN---VE-KYLDQCVQALLAQTLS--DIEIILIDDESPDNCPKICDDY--------------------- 55 (240)
T ss_dssp CCCSEEEEEEESS---CT-TTHHHHHHHHHTCSSS--SEEEEEEECCCSSSHHHHHHHH---------------------
T ss_pred CCCcEEEEEecCC---CH-HHHHHHHHHHHhCcCC--CeEEEEEECCCCcCHHHHHHHH---------------------
Confidence 4689999999999 65 6899999999999998 6999999999998665543221
Q ss_pred hhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeeccCC
Q 003073 427 EWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENG 506 (850)
Q Consensus 427 e~YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~rdhp~~iqV~l~~~G 506 (850)
.+
T Consensus 56 ----------------------------------------~~-------------------------------------- 57 (240)
T 3bcv_A 56 ----------------------------------------AA-------------------------------------- 57 (240)
T ss_dssp ----------------------------------------HH--------------------------------------
T ss_pred ----------------------------------------Hh--------------------------------------
Confidence 00
Q ss_pred CCCCCCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhcCC
Q 003073 507 GLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDP 579 (850)
Q Consensus 507 ~~d~~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~DP 579 (850)
..|++.|+..+ ..++++|+|.+++ .++|+||+++|+|.+ ..|++|.+++..|.++
T Consensus 58 -------~~~~i~~i~~~------n~G~~~a~N~g~~----~a~g~~i~~lD~Dd~-~~~~~l~~l~~~~~~~ 112 (240)
T 3bcv_A 58 -------QYPNIKVIHKK------NAGLGMACNSGLD----VATGEYVAFCDSDDY-VDSDMYMTMYNVAQKY 112 (240)
T ss_dssp -------HCSSEEEEECC------CCCHHHHHHHHHH----HCCSSEEEECCTTCC-CCTTHHHHHHHHHHHH
T ss_pred -------hCCCEEEEECC------CCChHHHHHHHHH----HcCCCEEEEECCCCc-CCHHHHHHHHHHHHhc
Confidence 01346666422 3479999999999 579999999999999 5899999999998653
No 6
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=99.62 E-value=1.9e-15 Score=172.41 Aligned_cols=115 Identities=17% Similarity=0.096 Sum_probs=91.5
Q ss_pred CCCCcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhh-HHHHHhhHHhhhhhHhHHHhhCCCCC
Q 003073 346 SQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLT-FEALSETSEFARKWVPFCKKYNIEPR 424 (850)
Q Consensus 346 ~~lP~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T-~e~L~Ea~~FA~~WvPFCkk~~IepR 424 (850)
..+|.|+|+||+|| |....+.+||.|++.+.||...++|+|+|||+++.| .+.|.+
T Consensus 109 ~~~P~vSVIIp~yN---e~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~-------------------- 165 (570)
T 2d7i_A 109 ETLPNTSIIIPFHN---EGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLED-------------------- 165 (570)
T ss_dssp SSCCCEEEEEEESS---CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHH--------------------
T ss_pred CCCCCeEEEEEECC---CCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHH--------------------
Confidence 46899999999999 877899999999999999954569999999999865 332211
Q ss_pred CchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeecc
Q 003073 425 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 504 (850)
Q Consensus 425 aPe~YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~rdhp~~iqV~l~~ 504 (850)
+.+
T Consensus 166 -----------------------------------------~~~------------------------------------ 168 (570)
T 2d7i_A 166 -----------------------------------------YMA------------------------------------ 168 (570)
T ss_dssp -----------------------------------------HHT------------------------------------
T ss_pred -----------------------------------------HHH------------------------------------
Confidence 100
Q ss_pred CCCCCCCCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhcCC
Q 003073 505 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDP 579 (850)
Q Consensus 505 ~G~~d~~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~DP 579 (850)
..|++.++..+++ .++++|+|.+++ .+.|+||++||+|.++ .|++|..++..|.+.
T Consensus 169 ---------~~~~v~vi~~~~n-----~G~~~A~N~G~~----~A~gd~i~fLD~D~~~-~p~~L~~ll~~l~~~ 224 (570)
T 2d7i_A 169 ---------LFPSVRILRTKKR-----EGLIRTRMLGAS----VATGDVITFLDSHCEA-NVNWLPPLLDRIARN 224 (570)
T ss_dssp ---------TSTTEEEEECSSC-----CCHHHHHHHHHH----HCCSSEEEECCSSEEE-CTTCSHHHHHHHHHC
T ss_pred ---------hCCeEEEEECCCC-----CCHHHHHHHHHH----hcCCCEEEEEcCCccc-cccHHHHHHHHHHhC
Confidence 1134677766653 469999999999 5789999999999995 899999999988543
No 7
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=99.61 E-value=3.6e-16 Score=156.21 Aligned_cols=124 Identities=13% Similarity=0.231 Sum_probs=95.5
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhhHhHHHhhCCCCCCchh
Q 003073 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 428 (850)
Q Consensus 349 P~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~WvPFCkk~~IepRaPe~ 428 (850)
|.|+|+||||| ++ ..+.+||.|++++.|| .++|+|+|||+++.|.+.+.+.
T Consensus 1 p~vSViIp~yn---~~-~~l~~~l~Sl~~q~~~--~~eiivvDd~S~d~t~~~~~~~----------------------- 51 (255)
T 1qg8_A 1 PKVSVIMTSYN---KS-DYVAKSISSILSQTFS--DFELFIMDDNSNEETLNVIRPF----------------------- 51 (255)
T ss_dssp CCEEEEEEESS---CT-TTHHHHHHHHHTCSCC--CEEEEEEECSCCHHHHHHHGGG-----------------------
T ss_pred CeEEEEEEcCC---CH-HHHHHHHHHHHhccCC--ceEEEEEECCCCchHHHHHHHH-----------------------
Confidence 68999999999 65 6899999999999999 6999999999998655433220
Q ss_pred hhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeeccCCCC
Q 003073 429 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 508 (850)
Q Consensus 429 YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~rdhp~~iqV~l~~~G~~ 508 (850)
.+
T Consensus 52 --------------------------------------~~---------------------------------------- 53 (255)
T 1qg8_A 52 --------------------------------------LN---------------------------------------- 53 (255)
T ss_dssp --------------------------------------GG----------------------------------------
T ss_pred --------------------------------------hh----------------------------------------
Confidence 00
Q ss_pred CCCCCCCCcEEEEeccCCCC----CCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhc-CCCCCc
Q 003073 509 DAEGNELPRLVYVSREKRPG----FQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DPNLGK 583 (850)
Q Consensus 509 d~~~~~lP~lvYvsReKRPg----~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~-DP~~G~ 583 (850)
-|++.|+..+.. + ....++++|+|.+++ .++|+||+++|+|.++ .|++|.+++.+|. +|
T Consensus 54 ------~~~i~~i~~~~~-~~~~~~~n~G~~~a~N~gi~----~a~g~~i~~lD~Dd~~-~~~~l~~~~~~~~~~~---- 117 (255)
T 1qg8_A 54 ------DNRVRFYQSDIS-GVKERTEKTRYAALINQAIE----MAEGEYITYATDDNIY-MPDRLLKMVRELDTHP---- 117 (255)
T ss_dssp ------STTEEEEECCCC-SHHHHHSSCHHHHHHHHHHH----HCCCSEEEEEETTEEE-CTTHHHHHHHHHHHCT----
T ss_pred ------cCCEEEEecccc-cccccccccCHHHHHHHHHH----HcCCCEEEEeCCCCcc-ChHHHHHHHHHHHhCC----
Confidence 023666666510 0 013479999999999 5799999999999995 7999999999885 56
Q ss_pred ceEEEecccccc
Q 003073 584 HVCYVQFPQRFD 595 (850)
Q Consensus 584 ~v~~VQtPQrF~ 595 (850)
++++|.+...+.
T Consensus 118 ~~~~v~~~~~~~ 129 (255)
T 1qg8_A 118 EKAVIYSASKTY 129 (255)
T ss_dssp TCCEEEEEEEEE
T ss_pred CceEEEeceEEE
Confidence 678888776654
No 8
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=99.60 E-value=2.1e-15 Score=168.23 Aligned_cols=113 Identities=16% Similarity=0.092 Sum_probs=90.6
Q ss_pred CCCCCcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhhHhHHHhhCCCCC
Q 003073 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPR 424 (850)
Q Consensus 345 ~~~lP~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~WvPFCkk~~IepR 424 (850)
+..+|.|+|+||+|| |....+.+||.|++.+.||...++|+|+|||+++.|.+.+.+
T Consensus 62 ~~~~p~vSVIIp~yN---~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~~~-------------------- 118 (501)
T 2ffu_A 62 RVDLPATSVVITFHN---EARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLG-------------------- 118 (501)
T ss_dssp CSSCCCEEEEEEESS---CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHGGG--------------------
T ss_pred CcCCCCEEEEEEeCc---CcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHHHh--------------------
Confidence 357999999999999 885589999999999999865679999999998854321100
Q ss_pred CchhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeecc
Q 003073 425 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 504 (850)
Q Consensus 425 aPe~YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~rdhp~~iqV~l~~ 504 (850)
T Consensus 119 -------------------------------------------------------------------------------- 118 (501)
T 2ffu_A 119 -------------------------------------------------------------------------------- 118 (501)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhcCC
Q 003073 505 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDP 579 (850)
Q Consensus 505 ~G~~d~~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~DP 579 (850)
..|++.|+..+++ .++++|+|.+++ .+.|+||+++|+|.++ .|++|..++..|.+.
T Consensus 119 ---------~~~~v~vi~~~~n-----~G~~~A~N~G~~----~A~gd~i~flD~D~~~-~p~~L~~ll~~~~~~ 174 (501)
T 2ffu_A 119 ---------KIEKVRVLRNDRR-----EGLMRSRVRGAD----AAQAKVLTFLDSHCEC-NEHWLEPLLERVAED 174 (501)
T ss_dssp ---------GBTTEEEEECSSC-----CHHHHHHHHHHH----HCCSSEEEECCSSEEE-CTTCHHHHHHHHHHC
T ss_pred ---------cCCCEEEEECCCC-----cCHHHHHHHHHH----hcCCCEEEEECCCccc-CccHHHHHHHHHHhC
Confidence 0134777776653 369999999999 5789999999999994 799999999988643
No 9
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=99.57 E-value=6e-15 Score=167.93 Aligned_cols=124 Identities=23% Similarity=0.307 Sum_probs=97.1
Q ss_pred CCCCcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhhHhHHHhhCCCCCC
Q 003073 346 SQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRA 425 (850)
Q Consensus 346 ~~lP~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~WvPFCkk~~IepRa 425 (850)
...|.|+|+||||| ++ ..+.+||.|++++.|| .++|+|+|||+++.|.+.+.+.
T Consensus 372 ~~~~~vsiii~~yn---~~-~~l~~~l~s~~~q~~~--~~eiivvdd~S~d~t~~~~~~~-------------------- 425 (625)
T 2z86_A 372 KRVPLVSIYIPAYN---CS-KYIVRCVESALNQTIT--DLEVCICDDGSTDDTLRILQEH-------------------- 425 (625)
T ss_dssp CSSCSEEEEEEESS---CT-TTHHHHHHHHHSSSCC--SEEEEEEEESCSSSHHHHHHHH--------------------
T ss_pred ccCCeEEEEEeCCC---CH-HHHHHHHHHHHhCcCC--CeEEEEEECcCChhHHHHHHHH--------------------
Confidence 45789999999999 65 6899999999999998 6899999999998665543221
Q ss_pred chhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeeccC
Q 003073 426 PEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGEN 505 (850)
Q Consensus 426 Pe~YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~rdhp~~iqV~l~~~ 505 (850)
.+
T Consensus 426 -----------------------------------------~~------------------------------------- 427 (625)
T 2z86_A 426 -----------------------------------------YA------------------------------------- 427 (625)
T ss_dssp -----------------------------------------HT-------------------------------------
T ss_pred -----------------------------------------Hh-------------------------------------
Confidence 00
Q ss_pred CCCCCCCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhh-cCCCCCcc
Q 003073 506 GGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKH 584 (850)
Q Consensus 506 G~~d~~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF-~DP~~G~~ 584 (850)
..|++.++. ++ ..++++|+|.+++ .++|+||+++|+|.+ ..|++|.+++..| .+| .
T Consensus 428 --------~~~~i~~~~-~~-----n~G~~~a~n~g~~----~a~g~~i~~ld~D~~-~~~~~l~~~~~~~~~~~----~ 484 (625)
T 2z86_A 428 --------NHPRVRFIS-QK-----NKGIGSASNTAVR----LCRGFYIGQLDSDDF-LEPDAVELCLDEFRKDL----S 484 (625)
T ss_dssp --------TCTTEEEEE-EC-----CCCHHHHHHHHHH----HCCSSEEEECCTTCE-ECTTHHHHHHHHHHHCT----T
T ss_pred --------hCCcEEEEe-CC-----CCCHHHHHHHHHH----hcCCCEEEEECCCcc-cChhHHHHHHHHHHhCC----C
Confidence 013466664 32 2479999999999 579999999999999 4899999999877 567 6
Q ss_pred eEEEeccccccC
Q 003073 585 VCYVQFPQRFDG 596 (850)
Q Consensus 585 v~~VQtPQrF~~ 596 (850)
+++|.+...+.+
T Consensus 485 ~~~v~~~~~~~~ 496 (625)
T 2z86_A 485 LACVYTTNRNID 496 (625)
T ss_dssp CSEEEEEEEEEC
T ss_pred eeEEEeeeEEEC
Confidence 888887766543
No 10
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=99.33 E-value=2.9e-12 Score=136.05 Aligned_cols=124 Identities=13% Similarity=-0.000 Sum_probs=91.1
Q ss_pred CCCcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhhHhHHHhhCCCCCCc
Q 003073 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAP 426 (850)
Q Consensus 347 ~lP~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~WvPFCkk~~IepRaP 426 (850)
.-|.|+|+||+|| |. ..+..+|.|++++.|| ..++|+|+|||+++.|.+.+.+.. . +
T Consensus 46 ~~~~vSViIp~yN---~~-~~l~~~l~sl~~q~~~-~~~eiivVDdgS~D~t~~~~~~~~---~-------~-------- 102 (329)
T 3ckj_A 46 AGRTISVVLPALD---EE-DTIGSVIDSISPLVDG-LVDELIVLDSGSTDDTEIRAVAAG---A-------R-------- 102 (329)
T ss_dssp TTCCEEEEEEESS---CT-TTHHHHHHHHGGGBTT-TBSEEEEEECSCCSSHHHHHHHTT---C-------E--------
T ss_pred cCCcEEEEEeeCC---CH-HHHHHHHHHHHHhhCC-CCcEEEEEeCCCCchHHHHHHHhh---h-------h--------
Confidence 4689999999999 76 5789999999999998 358999999999997666443310 0 0
Q ss_pred hhhhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeeccCC
Q 003073 427 EWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENG 506 (850)
Q Consensus 427 e~YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~rdhp~~iqV~l~~~G 506 (850)
..
T Consensus 103 -------~~----------------------------------------------------------------------- 104 (329)
T 3ckj_A 103 -------VV----------------------------------------------------------------------- 104 (329)
T ss_dssp -------EE-----------------------------------------------------------------------
T ss_pred -------hc-----------------------------------------------------------------------
Confidence 00
Q ss_pred CCCCCCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhh-hcCCCCCcce
Q 003073 507 GLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCF-MMDPNLGKHV 585 (850)
Q Consensus 507 ~~d~~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~f-F~DP~~G~~v 585 (850)
+++.++.+. ....+|++|+|.+++ .++|+||+++|+|.+...|++|.+++.+ +.+| ++
T Consensus 105 ---------~~~~~~~~~----~~n~G~~~a~n~g~~----~a~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~~----~~ 163 (329)
T 3ckj_A 105 ---------SREQALPEV----PIRPGKGEALWRSLA----ASRGDIVVFVDSDLINPHPMFVPWLVGPLLTGD----GV 163 (329)
T ss_dssp ---------EHHHHCTTS----CCCCSHHHHHHHHHH----HCCCSEEEECCTTEESCCTTHHHHHHHHHHSCS----SC
T ss_pred ---------cceeeeccC----CCCCCHHHHHHHHHH----hCCCCEEEEECCCCCCcChHHHHHHHHHHHhCC----Cc
Confidence 000011000 023479999999998 5799999999999983378999999987 5677 67
Q ss_pred EEEeccc
Q 003073 586 CYVQFPQ 592 (850)
Q Consensus 586 ~~VQtPQ 592 (850)
++|++..
T Consensus 164 ~~v~g~~ 170 (329)
T 3ckj_A 164 HLVKSFY 170 (329)
T ss_dssp CEEEEEE
T ss_pred cEEEEEe
Confidence 7787753
No 11
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=99.28 E-value=3.1e-13 Score=157.92 Aligned_cols=110 Identities=15% Similarity=0.187 Sum_probs=0.0
Q ss_pred CcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhhHHhhhhhHhHHHhhCCCCCCchh
Q 003073 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 428 (850)
Q Consensus 349 P~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~e~L~Ea~~FA~~WvPFCkk~~IepRaPe~ 428 (850)
|.|+|+||||| ++ ..+.+||.|+++++|| .++|+|+|||+++.|.+.+.+.. ++
T Consensus 2 p~vSVIIp~yN---~~-~~L~~~L~Sll~Qt~~--~~EIIVVDDgStD~t~~il~~~~----------~~---------- 55 (729)
T 3l7i_A 2 NKLTIIVTYYN---AE-EYITGCLESIKQQRTQ--DFNLIIVNDGSTDQSKKLMDEAI----------KD---------- 55 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEEEcCC---CH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCCcHHHHHHHHH----------Hh----------
Confidence 78999999999 65 6899999999999999 68999999999986665443310 00
Q ss_pred hhhhhcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeeccCCCC
Q 003073 429 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 508 (850)
Q Consensus 429 YF~~k~d~lk~k~~p~fvkerr~mKreYee~kvrIn~l~aka~k~p~~~w~m~dgt~wpg~~~rdhp~~iqV~l~~~G~~ 508 (850)
++
T Consensus 56 -----------------------------------------------------------------~~------------- 57 (729)
T 3l7i_A 56 -----------------------------------------------------------------YD------------- 57 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------------------------------------------------------CC-------------
Confidence 00
Q ss_pred CCCCCCCCcEEEEeccCCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhcCC
Q 003073 509 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDP 579 (850)
Q Consensus 509 d~~~~~lP~lvYvsReKRPg~~hh~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~DP 579 (850)
+++.|+..++ ..+.++|+|.+++ .++|+||+++|+|.++ .|++|.+++..|.++
T Consensus 58 -------~~i~~i~~~~-----n~G~~~arN~gi~----~A~gdyI~flD~Dd~~-~p~~l~~l~~~l~~~ 111 (729)
T 3l7i_A 58 -------KNIRFIDLDE-----NSGHAHARNIALE----EVETPYFMFLDADDEL-ASYAITFYLEKFNNT 111 (729)
T ss_dssp -----------------------------------------------------------------------
T ss_pred -------CCEEEEECCC-----CCCHHHHHHHHHH----hccCCEEEEECCCCCC-ChhHHHHHHHHhcCC
Confidence 1244554443 2468999999998 6899999999999995 899999999998754
No 12
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=99.25 E-value=1.8e-11 Score=142.87 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=40.9
Q ss_pred CCCCCcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCc-EEEEecCCCch
Q 003073 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKV-SCYVSDDGAAM 396 (850)
Q Consensus 345 ~~~lP~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl-~vyV~DDG~~~ 396 (850)
+..-|.|+|+||||| ++ ..+.++|.|++++.|+.++. +|+|+|||+++
T Consensus 176 ~~~~pkVSVVIptYN---~~-~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD 224 (657)
T 4fix_A 176 APGTANIAVGIPTFN---RP-ADCVNALRELTADPLVDQVIGAVIVPDQGERK 224 (657)
T ss_dssp CCSCCCEEEECCBSS---CH-HHHHHHHHHHTTSHHHHTTEEEEEEEECSSSC
T ss_pred CCCCCeEEEEEEecC---CH-HHHHHHHHHHHcCccccCCCCEEEEEECcCCC
Confidence 345689999999999 64 68999999999999965545 89999999976
No 13
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=98.95 E-value=7.6e-10 Score=117.23 Aligned_cols=53 Identities=11% Similarity=-0.080 Sum_probs=40.1
Q ss_pred chhHHHHHHHHHCCcEEEEeCCCCCcc----------cccCCCCHHHHHHHHHHHhhhhHHHH
Q 003073 777 TEDILTGFKMHARGWRSIYCMPKRPAF----------KGSAPINLSDRLNQVLRWALGSVEIL 829 (850)
Q Consensus 777 TEDi~Tg~rLh~rGwRsvY~~p~~aaf----------~G~aP~tls~~lkQR~RWA~G~lQIl 829 (850)
.||+++.+||+.+||++.+..+....+ +...|+.+..+.+||.||+.+++..+
T Consensus 201 ~ED~Dl~~Rl~~~G~~i~~~~~~~~~~~~i~H~~~~~~~~n~~~~~~l~~~~~~~~~~Gl~~~ 263 (287)
T 2fy7_A 201 GEDDDIFNRLVFRGMSISRPNAVVGTTRHIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSL 263 (287)
T ss_dssp CHHHHHHHHHHHTTCCCBCCCTTTCEEEECC---------CCCCCCCHHHHHHHTTTSSGGGC
T ss_pred cchHHHHHHHHHcCCeEEecCcccceeEEEecCCCcccCCCHHHHHHHhhcccEEcCCCcccC
Confidence 499999999999999887443211111 24578999999999999999988765
No 14
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=98.87 E-value=5.2e-09 Score=115.10 Aligned_cols=51 Identities=14% Similarity=-0.017 Sum_probs=42.2
Q ss_pred CCCcccEEEecCCCCCCCHHHHHHHHHHHHc--CCCCCCCcEEEEecCCCchhhHHHH
Q 003073 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSILA--VDYPVDKVSCYVSDDGAAMLTFEAL 402 (850)
Q Consensus 347 ~lP~VDVfVpt~nP~kEp~~vv~~Tvls~la--lDYP~~kl~vyV~DDG~~~~T~e~L 402 (850)
..|.|+|+||+|| |. ..+..+|.++++ .+||. .++|+|+|||+++.|.+.+
T Consensus 92 ~~p~vSVVIP~yN---e~-~~l~~~l~sl~~~l~~~~~-~~EIIVVDDgStD~T~~i~ 144 (387)
T 3f1y_A 92 LGLTVSAVLPSRN---VA-DTVGGIIDEIHALNERAPL-IDQILVVDADSEDGTAGVA 144 (387)
T ss_dssp HTCCEEEEEEESS---CT-TTHHHHHHHHHHHHHHSCC-CSEEEEEECSCSSSHHHHH
T ss_pred CCCeEEEEEEcCC---CH-HHHHHHHHHHHHHHhcCCC-CeEEEEEcCcCCccHHHHH
Confidence 3689999999999 76 688899999987 47764 4799999999999776644
No 15
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=98.42 E-value=1.3e-06 Score=89.19 Aligned_cols=46 Identities=7% Similarity=0.085 Sum_probs=39.2
Q ss_pred hhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhcC-----CCCCcceEEEe
Q 003073 535 AGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMD-----PNLGKHVCYVQ 589 (850)
Q Consensus 535 AGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~D-----P~~G~~v~~VQ 589 (850)
|.++|.+++ .++|+||++||+|.++ .+++|.+++.+|.. | ++++|-
T Consensus 63 a~a~N~Gi~----~A~g~yl~fln~D~~~-~~~~l~~l~~~~~~~~~~~~----~vg~vg 113 (249)
T 2nxv_A 63 FSWHKQMLP----RCKGRYVIFCHEDVEL-VDRGYDDLVAAIEALEEADP----KWLVAG 113 (249)
T ss_dssp TTHHHHHGG----GCCSSEEEEEETTEEC-SSCCHHHHHHHHHHHHHHCT----TEEEEE
T ss_pred HHHHHHHHH----hcCCCEEEEECCCccc-CccHHHHHHHHHHhcccCCC----CeeEEe
Confidence 678999998 5789999999999995 78999999998864 7 677653
No 16
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=97.60 E-value=0.00032 Score=77.80 Aligned_cols=46 Identities=17% Similarity=-0.045 Sum_probs=35.5
Q ss_pred CchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHhhhc
Q 003073 532 HKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM 577 (850)
Q Consensus 532 h~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~fF~ 577 (850)
.+|.+|++++++.....++|++|+++|||..-.+|++|.+++..+.
T Consensus 74 ~GkG~Al~~G~~~Al~~a~gd~vv~mDADlq~~~P~~i~~Ll~~l~ 119 (397)
T 2bo4_A 74 PGKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEAAD 119 (397)
T ss_dssp SSHHHHHHHHHHHHHHHCCCSEEEECCTTCSSCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 5899999999921000478999999999996236899999988764
No 17
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=97.23 E-value=0.00039 Score=75.85 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=38.6
Q ss_pred CCcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCch
Q 003073 348 LAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAM 396 (850)
Q Consensus 348 lP~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~ 396 (850)
|+.+.|+|+||| -| . +.+|+.|++++.++.++..|+|+|||+..
T Consensus 1 ~~~~pViI~~yN---Rp-~-l~~~L~sL~~~~p~~~~~~iivsdDgs~~ 44 (343)
T 1fo8_A 1 LAVIPILVIACD---RS-T-VRRCLDKLLHYRPSAELFPIIVSQDCGHE 44 (343)
T ss_dssp CCCCCEEEEESS---CT-T-HHHHHHHHHHHCSCTTTSCEEEEECTTCH
T ss_pred CCcccEEEEECC---cH-H-HHHHHHHHHhcCCCcCCcEEEEEECCCCH
Confidence 456889999999 66 6 99999999999977778889999999875
No 18
>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A*
Probab=97.13 E-value=0.0013 Score=73.02 Aligned_cols=40 Identities=18% Similarity=0.178 Sum_probs=30.5
Q ss_pred CchhhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHh
Q 003073 532 HKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMC 574 (850)
Q Consensus 532 h~KAGnLNalLrvSavlt~ge~I~ilDAD~~~~~pdfLr~tv~ 574 (850)
.+|..||-+.+.+.+ ..++++|+++|||-+ .|.++.+.+-
T Consensus 143 ~GKG~Am~aGl~~A~-~~~gd~Vv~~DaDl~--iP~~v~~~~k 182 (394)
T 2zu9_A 143 SGKGEGMLVGLLLAK-AIGAEYVGFVDADNY--IPGAVNEYVK 182 (394)
T ss_dssp CSHHHHHHHHHHHHH-HTTCSEEEECCSCBS--CHHHHHHHHH
T ss_pred CChHHHHHHHHHHHh-hCCCCEEEEEeCCCC--CHHHHHHHHH
Confidence 379999999998421 118999999999997 4777866553
No 19
>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*
Probab=96.79 E-value=0.0035 Score=69.11 Aligned_cols=43 Identities=16% Similarity=0.060 Sum_probs=35.4
Q ss_pred CCcccEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhH
Q 003073 348 LAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTF 399 (850)
Q Consensus 348 lP~VDVfVpt~nP~kEp~~vv~~Tvls~lalDYP~~kl~vyV~DDG~~~~T~ 399 (850)
+..+.|+||+|| |.. +++.+++.+-|. ...|+|+|||+.+.|.
T Consensus 52 ~~klSIVVPvYN---Ee~----~lLesVl~qi~~--d~eIIlVdDGS~D~s~ 94 (391)
T 2wvl_A 52 LEQTAIVVPTRN---ERL----KLLEGVLSGIPH--EALILVASNSSPDRFQ 94 (391)
T ss_dssp HTTEEEEEEESS---CCH----HHHHHHHHTSCT--TSEEEEEECCCHHHHH
T ss_pred HhceEEEEeccC---cHH----HHHHHHHhcCCC--CceEEEEECCCCCChH
Confidence 567999999999 885 357888888776 6889999999988653
No 20
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=96.41 E-value=0.0045 Score=53.81 Aligned_cols=53 Identities=30% Similarity=0.829 Sum_probs=43.6
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccccccc
Q 003073 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr 71 (850)
....|.||-+.+-+ +.-.|.+| .||.-.|+.|+.--.++++..||.|+.+|..
T Consensus 10 ~~~~CpICle~~~~--~d~~~~p~-~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 10 DPVECPLCMEPLEI--DDINFFPC-TCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCBCTTTCCBCCT--TTTTCCSS-TTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred cCCcCCccCccCcc--cccccccc-CCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 34589999997633 33468888 9999999999987777788999999999964
No 21
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=87.62 E-value=0.47 Score=39.20 Aligned_cols=51 Identities=29% Similarity=0.600 Sum_probs=36.6
Q ss_pred cCCccccccCCCcccCCCCCceeecCCCCC---CcchhhhHhHHh-cCCCCCCCcccccc
Q 003073 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAF---PVCRPCYEYERK-DGNQSCPQCKTRYK 70 (850)
Q Consensus 15 ~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~F---pVCRpCYEyERk-eG~q~CPqCkt~Yk 70 (850)
..+..|.||-++ .+++++.+| .|.= -|=+.|.+-=.+ .|+..||.|+++|.
T Consensus 4 ~~~~~CrIC~~~----~~~~l~~PC-~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEE----LGNERFRAC-GCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEE----CSCCCCCSC-CCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecC----CCCceecCc-CCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 455689999775 234577888 6643 455678765555 47899999999996
No 22
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.25 E-value=0.64 Score=37.56 Aligned_cols=55 Identities=27% Similarity=0.704 Sum_probs=39.8
Q ss_pred cCCccccccCCCcccCC-CCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccccccc
Q 003073 15 VGGQVCQICGDNVGKTV-DGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (850)
Q Consensus 15 ~~~~~C~iCgd~Vg~~~-~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr 71 (850)
.....|.||-+.+.-.. .++.++.- .|+--.|+.|.+--.+. +..||-|++++.+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEEC-SSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeC-CCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 44568999999865443 34444443 78999999999654443 6899999998753
No 23
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=86.31 E-value=0.32 Score=39.75 Aligned_cols=56 Identities=27% Similarity=0.698 Sum_probs=40.7
Q ss_pred cccCCccccccCCCcccCC-CCCceeecCCCCCCcchhhhHhHHhcCCCCCCCcccccc
Q 003073 13 KNVGGQVCQICGDNVGKTV-DGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (850)
Q Consensus 13 ~~~~~~~C~iCgd~Vg~~~-~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Yk 70 (850)
.......|.||-+.+.-.. +++..+.- .|+--.|+.|.+--.+. +..||.|++++.
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKIN 62 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEEC-TTSCEEEHHHHHHHHHH-CSBCTTTCCBCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeC-CCCChHhHHHHHHHHHc-CCCCCCCCCccC
Confidence 3445678999999876543 45544444 89999999999644443 479999999885
No 24
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.85 E-value=0.9 Score=39.51 Aligned_cols=57 Identities=21% Similarity=0.480 Sum_probs=40.7
Q ss_pred ccccCCccccccCCCcccCCCCCceeecCCCC---CCcchhhhHhHHhc-CCCCCCCccccccc
Q 003073 12 IKNVGGQVCQICGDNVGKTVDGNPFVACDVCA---FPVCRPCYEYERKD-GNQSCPQCKTRYKK 71 (850)
Q Consensus 12 ~~~~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~---FpVCRpCYEyERke-G~q~CPqCkt~Ykr 71 (850)
........|.||-++. ++++.+..+| .|. --+.+.|.+-=.+. ++..||.|++.|.-
T Consensus 10 ~~~~~~~~C~IC~~~~--~~~~~l~~pC-~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 10 ITPSSQDICRICHCEG--DDESPLITPC-HCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CCCTTSCCCSSSCCCC--CSSSCEECSS-SCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCCCeEcCccc--cCCCeeEecc-ccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 3445667999998874 3445566778 553 67999999655443 45799999999964
No 25
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=85.22 E-value=0.73 Score=37.37 Aligned_cols=53 Identities=25% Similarity=0.587 Sum_probs=37.2
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccccccc
Q 003073 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (850)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr 71 (850)
...|.||-+++-.+.. ..++.= .||--.|+.|.+--...++..||.|++++..
T Consensus 3 ~~~C~IC~~~~~~~~~-~~~~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPS-LKLMVN-VCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSS-CCEEEC-TTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCc-cCeecC-CCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 4589999884333221 122332 6899999999976556677899999999864
No 26
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=85.12 E-value=0.6 Score=39.08 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=37.8
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCcccccc
Q 003073 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Yk 70 (850)
..-.|.||.+..- ++.+. .|+.-.|+.|.+--.+.|+..||.|++++.
T Consensus 7 ~~~~C~IC~~~~~-----~Pv~~--~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 7 EYFRCPISLELMK-----DPVIV--STGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSSCTTTSCCCS-----SEEEE--TTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred ccCCCCCcccccc-----CCEEc--CCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 3558999987532 24343 699999999998778788899999999874
No 27
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=84.86 E-value=0.63 Score=44.75 Aligned_cols=48 Identities=27% Similarity=0.717 Sum_probs=38.0
Q ss_pred ccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccccccc
Q 003073 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (850)
Q Consensus 18 ~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr 71 (850)
..|.||-+.+. ++ |.+..|+--.|+.|.+--.+.++..||.|++++..
T Consensus 55 ~~C~IC~~~~~-----~p-~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 55 LMCPICLDMLK-----NT-MTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HBCTTTSSBCS-----SE-EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCcccChHhh-----Cc-CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 38999987753 13 33347899999999988888888999999999853
No 28
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=84.35 E-value=1.6 Score=35.56 Aligned_cols=53 Identities=19% Similarity=0.427 Sum_probs=36.4
Q ss_pred cCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCcccccccc
Q 003073 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (850)
Q Consensus 15 ~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr~ 72 (850)
.....|.||-+.+. +++..+.- .|+--.|+.|..--.+. +..||-|+++....
T Consensus 12 ~~~~~C~IC~~~~~---~~~~~~~~-~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILE---EGEDVRRL-PCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCC---SSSCEEEC-TTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCcccc---CCCcEEEe-CCCCHHHHHHHHHHHHc-CCCCcCcCccccCc
Confidence 45568999998763 23333333 58888999999543333 46799999988643
No 29
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=83.28 E-value=2.8 Score=34.88 Aligned_cols=53 Identities=19% Similarity=0.470 Sum_probs=36.8
Q ss_pred cCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCcccccccc
Q 003073 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (850)
Q Consensus 15 ~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr~ 72 (850)
.....|.||-+.+.. ++..+.- .|+--.|+.|..--. ..+..||-|+.++...
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~~~-~C~H~fc~~Ci~~~~-~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYAL---GESVRQL-PCNHLFHDSCIVPWL-EQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCT---TSCEEEC-TTSCEEETTTTHHHH-TTTCSCTTTCCCCCCS
T ss_pred CCCCCCeeCCccccC---CCCEEEe-CCCCeecHHHHHHHH-HcCCcCcCcCCccCCc
Confidence 456699999988643 3333222 478889999995444 3457999999998643
No 30
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=83.21 E-value=0.43 Score=38.04 Aligned_cols=53 Identities=26% Similarity=0.680 Sum_probs=38.6
Q ss_pred CccccccCCCcccCC-CCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccccccc
Q 003073 17 GQVCQICGDNVGKTV-DGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (850)
Q Consensus 17 ~~~C~iCgd~Vg~~~-~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr 71 (850)
...|.||-+...-.. +++..+.- .|+--.|+.|.+--.+. +..||.|++++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 56 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHHHH-CSBCTTTCCBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHHHc-CCCCCCCCccCCc
Confidence 458999999865443 44444444 78999999999644443 6899999998853
No 31
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.68 E-value=0.99 Score=37.07 Aligned_cols=49 Identities=31% Similarity=0.633 Sum_probs=36.6
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHh--cCCCCCCCccccccc
Q 003073 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERK--DGNQSCPQCKTRYKK 71 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERk--eG~q~CPqCkt~Ykr 71 (850)
....|.||-+... ++.+ . .|+--.|+.|.+--.+ .++..||.|++++..
T Consensus 19 ~~~~C~IC~~~~~-----~~~~-~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 19 EEVICPICLDILQ-----KPVT-I-DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCBCTTTCSBCS-----SEEE-C-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred cCCEeccCCcccC-----CeEE-c-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 4568999998754 2333 2 7899999999976554 366799999999864
No 32
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=82.55 E-value=1.6 Score=33.93 Aligned_cols=50 Identities=18% Similarity=0.468 Sum_probs=35.1
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccccc
Q 003073 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 69 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Y 69 (850)
....|.||-+.+.. |+..+....|+--.|+.|..--. ..+..||-|++++
T Consensus 4 ~~~~C~IC~~~~~~---~~~~~~~~~C~H~f~~~Ci~~w~-~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 4 DGVECAVCLAELED---GEEARFLPRCGHGFHAECVDMWL-GSHSTCPLCRLTV 53 (55)
T ss_dssp CSCCCTTTCCCCCT---TSCCEECSSSCCEECTTHHHHTT-TTCCSCSSSCCCS
T ss_pred CCCcCccCCccccC---CCceEECCCCCCcccHHHHHHHH-HcCCcCcCCCCEe
Confidence 45689999988643 33334443588889999995333 3468999999875
No 33
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=81.61 E-value=1.5 Score=33.95 Aligned_cols=50 Identities=28% Similarity=0.592 Sum_probs=35.6
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccccc
Q 003073 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 69 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Y 69 (850)
....|.||-+.+.. .++. +..-.|+--.|+.|..--.+.. ..||-|++++
T Consensus 4 ~~~~C~IC~~~~~~--~~~~-~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHT--SRVV-AHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCT--TTSC-EEECTTSCEEETTHHHHHHHHT-CCCTTSCCSS
T ss_pred CCCcCcccChhhcC--CCcC-eEecCCCCcccHHHHHHHHHcC-CcCCCCCCcC
Confidence 45689999988642 2222 3334688899999996555554 8999999875
No 34
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=81.33 E-value=1.1 Score=41.04 Aligned_cols=47 Identities=28% Similarity=0.664 Sum_probs=35.8
Q ss_pred ccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccccccc
Q 003073 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (850)
Q Consensus 18 ~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr 71 (850)
..|.||-+.+- ++.+. .|+--.|+.|.+--.+.+...||.|++++..
T Consensus 53 ~~C~IC~~~~~-----~p~~~--~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVF-----RPITT--VCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCS-----SEEEC--TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHc-----CcEEe--eCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 47999988754 23222 6899999999976666666799999999853
No 35
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=80.51 E-value=1.6 Score=39.02 Aligned_cols=61 Identities=23% Similarity=0.427 Sum_probs=42.0
Q ss_pred cCCccccccCCCcccCC-----------CCCceeecCCCCCCcchhhhHhHHh----cCCCCCCCccccccccCCC
Q 003073 15 VGGQVCQICGDNVGKTV-----------DGNPFVACDVCAFPVCRPCYEYERK----DGNQSCPQCKTRYKKHKGS 75 (850)
Q Consensus 15 ~~~~~C~iCgd~Vg~~~-----------~Ge~FvAC~eC~FpVCRpCYEyERk----eG~q~CPqCkt~Ykr~kGs 75 (850)
.....|.||-+.+...+ +-..++..-.|+=-.|+.|.+-=.+ ..+..||-|++.|...+|.
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~ 98 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGT 98 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSS
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCC
Confidence 34468999988865432 1123444557888999999975444 4567999999999765543
No 36
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.91 E-value=1.3 Score=36.06 Aligned_cols=49 Identities=18% Similarity=0.453 Sum_probs=37.3
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccccccc
Q 003073 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr 71 (850)
....|.||.+.+. ++.+ -.|+--.|+.|.+--.+.++..||.|++++..
T Consensus 14 ~~~~C~IC~~~~~-----~p~~--~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 14 DKYKCEKCHLVLC-----SPKQ--TECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCEECTTTCCEES-----SCCC--CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCCCCCCChHhc-----CeeE--CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 3568999988753 2222 26888899999987776778899999999854
No 37
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.04 E-value=3.2 Score=34.52 Aligned_cols=49 Identities=29% Similarity=0.797 Sum_probs=35.4
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHh-----cCCCCCCCccccccc
Q 003073 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERK-----DGNQSCPQCKTRYKK 71 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERk-----eG~q~CPqCkt~Ykr 71 (850)
....|.||-+..-- +. .. .|+--.|+.|..--.+ .+...||.|++++..
T Consensus 18 ~~~~C~IC~~~~~~-----p~-~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLTQ-----PL-SL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCSS-----CB-CC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccCC-----ce-eC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 35689999987531 22 22 5888999999965433 357899999999853
No 38
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=77.68 E-value=4.1 Score=33.86 Aligned_cols=49 Identities=29% Similarity=0.764 Sum_probs=35.5
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhc-----CCCCCCCccccccc
Q 003073 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKD-----GNQSCPQCKTRYKK 71 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERke-----G~q~CPqCkt~Ykr 71 (850)
....|.||-+...- + +.. .|+--.|+.|.+--.+. +...||.|++++..
T Consensus 18 ~~~~C~IC~~~~~~-----p-~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLELLKE-----P-VSA-DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSCCSS-----C-EEC-TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChhhCc-----c-eeC-CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 34589999887532 2 223 58889999999755444 47899999998853
No 39
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.26 E-value=2.5 Score=35.76 Aligned_cols=53 Identities=21% Similarity=0.423 Sum_probs=37.3
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhc--CCCCCCCccccccc
Q 003073 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKD--GNQSCPQCKTRYKK 71 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERke--G~q~CPqCkt~Ykr 71 (850)
....|.||-+....+ ....+.- .|+--.|+.|.+--.+. +...||.|++++..
T Consensus 14 ~~~~C~IC~~~~~~~--~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 14 EVLECPICMESFTEE--QLRPKLL-HCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SCCBCTTTCCBCCTT--SSCEEEC-SSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCCccCCcccccc--CCCeEEC-CCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 345899999875432 2223334 68999999999755444 36899999999853
No 40
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=77.01 E-value=0.56 Score=45.92 Aligned_cols=52 Identities=19% Similarity=0.420 Sum_probs=43.9
Q ss_pred cCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCcccc
Q 003073 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 68 (850)
Q Consensus 15 ~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~ 68 (850)
.+...|.+|+...|+- +..-+.|..|...||+.|-.|-++++.=.|--|-..
T Consensus 66 ~~~~~C~~C~~~fg~l--~~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 66 LNETHCARCLQPYRLL--LNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGGTBCTTTCCBGGGC--SSCCEECTTTCCEECGGGEECCSSSSSCEEHHHHHH
T ss_pred CCCccchhhcCccccc--cCCCCcCCCCCchhhcccccccCCCCcEeeHHHHHH
Confidence 3577999999998887 444789999999999999999888888888877544
No 41
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=76.35 E-value=1.7 Score=43.53 Aligned_cols=48 Identities=10% Similarity=0.007 Sum_probs=36.3
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCcccccc
Q 003073 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Yk 70 (850)
..-+|.||++- +. ++.+. .||+-.||.|-+--.+.+...||.|++++.
T Consensus 105 ~~f~CPI~~el-m~----DPV~~--~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 105 DYLCGKISFEL-MR----EPCIT--PSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp GGGBCTTTCSB-CS----SEEEC--TTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred HhhcccCcccc-CC----CCeEC--CCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 34589999864 33 46666 499999999998776664457999999884
No 42
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=76.21 E-value=2.5 Score=42.84 Aligned_cols=49 Identities=10% Similarity=0.013 Sum_probs=36.9
Q ss_pred cCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCcccccc
Q 003073 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (850)
Q Consensus 15 ~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Yk 70 (850)
..--.|.||.+-. -++.+. .||.-.||.|-+--.+++...||.|+++..
T Consensus 206 ~~~~~c~i~~~~~-----~dPv~~--~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 206 PDYLCGKISFELM-----REPCIT--PSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CSTTBCTTTCSBC-----SSEEEC--SSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CcccCCcCcCCHh-----cCCeEC--CCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 4556899997642 234443 489999999998777777677999999884
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=75.21 E-value=2.6 Score=38.31 Aligned_cols=47 Identities=21% Similarity=0.475 Sum_probs=36.0
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCcccccc
Q 003073 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (850)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Yk 70 (850)
.-.|.||.+.+- ++ |.. .|+--.|+.|.+--.+.++..||.|+++..
T Consensus 18 ~~~C~IC~~~~~-----~p-~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (118)
T 3hct_A 18 KYECPICLMALR-----EA-VQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (118)
T ss_dssp GGBCTTTCSBCS-----SE-EEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCcCChhhc-----Ce-EEC-CcCChhhHHHHHHHHhhCCCCCCCCCCCcC
Confidence 348999997653 23 334 689999999997777766669999998874
No 44
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=74.52 E-value=2.5 Score=37.47 Aligned_cols=48 Identities=21% Similarity=0.531 Sum_probs=37.9
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCcccccc
Q 003073 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (850)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Yk 70 (850)
...|.||-+.+- .-|.|-.|+--.|+.|..--.+.....||.|++++.
T Consensus 22 ~~~C~IC~~~~~------~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 22 VFRCFICMEKLR------DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HTBCTTTCSBCS------SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCccCCcccc------CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 347999998753 245667899999999997666666579999999984
No 45
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=73.99 E-value=1.4 Score=39.71 Aligned_cols=48 Identities=25% Similarity=0.742 Sum_probs=36.8
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccccccc
Q 003073 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (850)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr 71 (850)
.-.|.||-+..- ++.+. .|+--.|+.|..--.+.++..||.|++++..
T Consensus 15 ~~~C~iC~~~~~-----~p~~~--~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILV-----EPVTL--PCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCS-----SCEEC--TTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccC-----ceeEc--CCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 457999997753 23332 6899999999976666778899999999863
No 46
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=70.09 E-value=4.9 Score=32.45 Aligned_cols=50 Identities=24% Similarity=0.479 Sum_probs=34.7
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCcccccccc
Q 003073 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr~ 72 (850)
....|.||-+... +.. ..-.|+--.|+.|..--.+ .+..||-|+++....
T Consensus 4 ~~~~C~IC~~~~~-----~~~-~~~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPS-----NYS-MALPCLHAFCYVCITRWIR-QNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCC-----SCE-EETTTTEEESTTHHHHHHH-HSCSTTTTCCCCCCE
T ss_pred CCCCCeeCCcccc-----CCc-EecCCCCeeHHHHHHHHHh-CcCcCcCCChhhHhh
Confidence 3458999998853 111 2235788899999964433 447999999998643
No 47
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=69.63 E-value=3.9 Score=35.72 Aligned_cols=48 Identities=19% Similarity=0.424 Sum_probs=34.6
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccccccc
Q 003073 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (850)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr 71 (850)
...|.||-+... ++.+ ...|+--.|+.|.+--.+ .+..||.|++++..
T Consensus 22 ~~~C~IC~~~~~-----~p~~-~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFN-----IAMI-IPQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCS-----SEEE-CTTTCCEEEHHHHHHHHT-TCCBCTTTCCBCCG
T ss_pred CCCcccCChhhC-----CcCE-ECCCCCHhhHHHHHHHHH-CCCCCCCCCCcCCh
Confidence 358999988753 1322 236899999999965444 45899999998853
No 48
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.72 E-value=7.3 Score=31.99 Aligned_cols=52 Identities=17% Similarity=0.441 Sum_probs=36.6
Q ss_pred cCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccccccc
Q 003073 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (850)
Q Consensus 15 ~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr 71 (850)
.....|.||-+.+.. ++..+.. .|+--.|+.|..--.+. +..||-|++++..
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~~~-~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKP---RDELGIC-PCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCS---SSCEEEE-TTTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCC---CCcEEEc-CCCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence 345689999998543 3334433 48888999999644443 4689999998854
No 49
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.24 E-value=12 Score=30.83 Aligned_cols=49 Identities=18% Similarity=0.475 Sum_probs=35.1
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccccccc
Q 003073 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr 71 (850)
....|.||-+..-- +. ....|+--.|+.|.+--.+. +..||.|++++..
T Consensus 14 ~~~~C~IC~~~~~~-----p~-~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 14 PYILCSICKGYLID-----AT-TITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQ 62 (72)
T ss_dssp GGGSCTTTSSCCSS-----CE-ECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCS
T ss_pred CCCCCCCCChHHHC-----cC-EECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCc
Confidence 34589999876432 22 22367888899999655544 6899999999864
No 50
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=66.33 E-value=4.3 Score=38.90 Aligned_cols=46 Identities=28% Similarity=0.639 Sum_probs=35.3
Q ss_pred ccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCcccccc
Q 003073 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (850)
Q Consensus 18 ~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Yk 70 (850)
..|.||-+..- ++.+ -.|+--.|+.|.+--.+.++..||.|++++.
T Consensus 79 ~~C~IC~~~~~-----~pv~--~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 124 (150)
T 1z6u_A 79 FMCVCCQELVY-----QPVT--TECFHNVCKDCLQRSFKAQVFSCPACRHDLG 124 (150)
T ss_dssp TBCTTTSSBCS-----SEEE--CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CEeecCChhhc-----CCEE--cCCCCchhHHHHHHHHHhCCCcCCCCCccCC
Confidence 47999988642 2333 2788899999997777767679999999985
No 51
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.12 E-value=3 Score=34.63 Aligned_cols=53 Identities=17% Similarity=0.402 Sum_probs=36.6
Q ss_pred cCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCcccccccc
Q 003073 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (850)
Q Consensus 15 ~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr~ 72 (850)
.....|.||-+.+.. ++..+.- .|+--.|+.|..--.+ .+..||-|+.++...
T Consensus 21 ~~~~~C~IC~~~~~~---~~~~~~l-~C~H~fh~~Ci~~w~~-~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDFES---RQLLRVL-PCNHEFHAKCVDKWLK-ANRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEECCB---TCEEEEE-TTTEEEETTHHHHHHH-HCSSCTTTCCCCCCC
T ss_pred CCCCCCeECCcccCC---CCeEEEE-CCCCHhHHHHHHHHHH-cCCcCcCcCCcCCCC
Confidence 345689999988643 3333333 4788899999964443 357999999887544
No 52
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=65.44 E-value=3.8 Score=36.76 Aligned_cols=47 Identities=6% Similarity=-0.096 Sum_probs=34.9
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCcccccc
Q 003073 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Yk 70 (850)
..-.|.||++- +. ++.+. .||.-.||.|-+--.+ ++..||.|+.++.
T Consensus 28 ~~~~CpI~~~~-m~----dPV~~--~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~ 74 (100)
T 2kre_A 28 DEFRDPLMDTL-MT----DPVRL--PSGTIMDRSIILRHLL-NSPTDPFNRQTLT 74 (100)
T ss_dssp TTTBCTTTCSB-CS----SEEEE--TTTEEEEHHHHHHHTT-SCSBCSSSCCBCC
T ss_pred HhhCCcCccCc-cc----CCeEC--CCCCEEchHHHHHHHH-cCCCCCCCCCCCC
Confidence 34589999753 33 35444 3899999999976665 5789999999884
No 53
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=64.87 E-value=4.1 Score=35.31 Aligned_cols=47 Identities=6% Similarity=-0.101 Sum_probs=34.8
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCcccccc
Q 003073 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Yk 70 (850)
..-.|.||++- +. ++.+. .||.-.||.|-+--.+ ++..||.|++++.
T Consensus 13 ~~~~CpI~~~~-m~----dPV~~--~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 13 DEFRDPLMDTL-MT----DPVRL--PSGTVMDRSIILRHLL-NSPTDPFNRQMLT 59 (85)
T ss_dssp TTTBCTTTCSB-CS----SEEEC--TTSCEEEHHHHHHHHH-HCSBCTTTCCBCC
T ss_pred hheECcccCch-hc----CCeEC--CCCCEECHHHHHHHHh-cCCCCCCCcCCCC
Confidence 34589999763 32 24443 3899999999976665 4689999999884
No 54
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=64.71 E-value=6.6 Score=33.67 Aligned_cols=49 Identities=22% Similarity=0.582 Sum_probs=34.7
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHh-cCCCCCCCcccccc
Q 003073 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERK-DGNQSCPQCKTRYK 70 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERk-eG~q~CPqCkt~Yk 70 (850)
..-.|.||.+..- ++.+ ...|+--.|+.|.+--.+ .+...||.|++++.
T Consensus 12 ~~~~C~IC~~~~~-----~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDIMT-----DAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEECS-----SCEE-CTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCCCCCCChhhc-----CceE-CCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4458999997542 2322 223899999999965543 45589999999873
No 55
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=64.70 E-value=4 Score=35.46 Aligned_cols=50 Identities=20% Similarity=0.509 Sum_probs=35.4
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCcccccc
Q 003073 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Yk 70 (850)
....|.||-+.+. +|+..+.. .|+--.|+.|..--. ..+..||-|+.++.
T Consensus 39 ~~~~C~IC~~~~~---~~~~~~~l-~C~H~Fh~~Ci~~wl-~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 39 QEMCCPICCSEYV---KGDVATEL-PCHHYFHKPCVSIWL-QKSGTCPVCRCMFP 88 (91)
T ss_dssp SCSEETTTTEECC---TTCEEEEE-TTTEEEEHHHHHHHH-TTTCBCTTTCCBSS
T ss_pred CCCCCcccChhhc---CCCcEEec-CCCChHHHHHHHHHH-HcCCcCcCcCccCC
Confidence 3457999988764 34554444 488889999985433 45679999998763
No 56
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=64.12 E-value=4.9 Score=38.55 Aligned_cols=47 Identities=21% Similarity=0.475 Sum_probs=37.1
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCcccccc
Q 003073 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (850)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Yk 70 (850)
.-.|.||.+.+- ++ |.+ .|+--.|+.|.+--.+.++..||.|++++.
T Consensus 18 ~~~C~IC~~~~~-----~p-v~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (170)
T 3hcs_A 18 KYECPICLMALR-----EA-VQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (170)
T ss_dssp GGBCTTTCSBCS-----SE-EEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCChhhc-----Cc-EEC-CCCCHHHHHHHHHHHHhCCCCCCCCccCcc
Confidence 348999998642 23 446 799999999998877777779999998874
No 57
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.11 E-value=12 Score=29.86 Aligned_cols=43 Identities=28% Similarity=0.668 Sum_probs=31.7
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhc--CCCCCCCc
Q 003073 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKD--GNQSCPQC 65 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERke--G~q~CPqC 65 (850)
....|.||-+.+- ++.+. .|+--.|+.|.+--.+. ++..||.|
T Consensus 19 ~~~~C~IC~~~~~-----~p~~~--~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQ-----KPVTI--DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCS-----SCEEC--TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhC-----CeEEe--CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4558999988753 23332 68999999999766554 66789988
No 58
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.99 E-value=6.2 Score=33.63 Aligned_cols=56 Identities=21% Similarity=0.428 Sum_probs=38.6
Q ss_pred cCCccccccCCCcccC--------CCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccccccc
Q 003073 15 VGGQVCQICGDNVGKT--------VDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (850)
Q Consensus 15 ~~~~~C~iCgd~Vg~~--------~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr 71 (850)
.....|.||-+++.-. ..++..+.-..|+=-.|+.|.+-=. +.++.||-|++++..
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWV-KQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHT-TTCCBCTTTCCBCCE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHH-HhCCCCCCcCCCcch
Confidence 4567899999987542 2344333333788889999985433 345799999998854
No 59
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.43 E-value=10 Score=31.79 Aligned_cols=47 Identities=23% Similarity=0.459 Sum_probs=34.5
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCcccccc
Q 003073 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Yk 70 (850)
....|.||-+.+- ++.+ -.|+--.|+.|..--.+ .+..||.|++++.
T Consensus 14 ~~~~C~IC~~~~~-----~p~~--~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQ-----NPVV--TKCRHYFCESCALEHFR-ATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCC-----SEEE--CTTSCEEEHHHHHHHHH-HCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhc-----CeeE--ccCCCHhHHHHHHHHHH-CCCcCCCcCcccc
Confidence 3458999988762 1333 26888899999965554 3689999999884
No 60
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=62.99 E-value=6 Score=34.93 Aligned_cols=47 Identities=26% Similarity=0.576 Sum_probs=33.5
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHh--cCCCCCCCcccccc
Q 003073 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERK--DGNQSCPQCKTRYK 70 (850)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERk--eG~q~CPqCkt~Yk 70 (850)
...|.||-+..- ++.+ . .|+--.|+.|.+--.+ .+...||.|++++.
T Consensus 21 ~~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 21 ILECPICLELIK-----EPVS-T-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HTSCSSSCCCCS-----SCCB-C-TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCcccChhhc-----CeEE-C-CCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 348999988652 1222 2 6888999999975544 34468999999875
No 61
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=62.79 E-value=4.3 Score=37.39 Aligned_cols=48 Identities=25% Similarity=0.708 Sum_probs=33.4
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCcccccccc
Q 003073 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (850)
Q Consensus 19 ~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr~ 72 (850)
.|.+|+-.|-+- |- .++| .=-.|-.|+..-.+++.+.||.|+.+..|.
T Consensus 3 fC~~C~~Pi~iy--gR-mIPC---kHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKVY--GR-MIPC---KHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSEE--EE-EETT---CCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeEEE--ee-eccc---cccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 466666554321 11 2333 445699999877889999999999999876
No 62
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=61.95 E-value=5.9 Score=35.21 Aligned_cols=48 Identities=21% Similarity=0.553 Sum_probs=34.9
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccccccc
Q 003073 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (850)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr 71 (850)
...|.||.+..- ++.+ ...|+--.|+.|..--.+. +..||.|++.+..
T Consensus 15 ~~~C~IC~~~~~-----~p~~-~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFI-----DATT-IIECLHSFCKTCIVRYLET-SKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCS-----SEEE-ETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCS
T ss_pred cCCCccCChHHh-----CcCE-eCCCCChhhHHHHHHHHHh-CCcCcCCCccccc
Confidence 458999988752 2333 3368999999999655544 4899999998853
No 63
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=61.60 E-value=5.5 Score=37.20 Aligned_cols=44 Identities=27% Similarity=0.608 Sum_probs=31.7
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCcccccc
Q 003073 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (850)
Q Consensus 19 ~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Yk 70 (850)
.|.||-+..- ++ |.. .|+--.|+.|..--. ..+..||.|+++.+
T Consensus 55 ~C~iC~~~~~-----~~-~~~-~CgH~fc~~Ci~~~~-~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 55 QCIICSEYFI-----EA-VTL-NCAHSFCSYCINEWM-KRKIECPICRKDIK 98 (138)
T ss_dssp BCTTTCSBCS-----SE-EEE-TTSCEEEHHHHHHHT-TTCSBCTTTCCBCC
T ss_pred CCcccCcccC-----Cc-eEC-CCCCCccHHHHHHHH-HcCCcCCCCCCcCC
Confidence 6999988752 12 223 578889999985433 44678999999875
No 64
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=61.15 E-value=5.9 Score=35.87 Aligned_cols=45 Identities=22% Similarity=0.430 Sum_probs=33.3
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCcccccc
Q 003073 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (850)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Yk 70 (850)
...|.||-+... ++.+.. .|+--.|+.|..--.+ ..||.|++++.
T Consensus 22 ~~~C~IC~~~~~-----~pv~~~-~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILR-----EPVCLG-GCEHIFCSNCVSDCIG---TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCS-----SCBCCC-SSSCCBCTTTGGGGTT---TBCSSSCCBCS
T ss_pred CCCCCCCChHhh-----CccEeC-CCCCHHHHHHHHHHhc---CCCcCCCCcCc
Confidence 458999987652 343333 6899999999965444 78999999984
No 65
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=60.49 E-value=4.9 Score=38.43 Aligned_cols=39 Identities=28% Similarity=0.619 Sum_probs=31.0
Q ss_pred ccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhH
Q 003073 14 NVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE 54 (850)
Q Consensus 14 ~~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyE 54 (850)
+.+...|.+|+...|+-.+ .-+.|..|...||+-|-.+-
T Consensus 52 ~~~~~~C~~C~~~~g~l~~--~g~~C~~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 52 GDGVNRCILCGEQLGMLGS--ASVVCEDCKKNVCTKCGVET 90 (134)
T ss_dssp SCSSSBCSSSCCBCSTTSC--CEEECTTTCCEEETTSEEEC
T ss_pred cCCCccccccCCCcccccC--CCCCCCCCCcccccccCCcc
Confidence 4567799999999975432 22899999999999998653
No 66
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=59.46 E-value=7.4 Score=34.94 Aligned_cols=48 Identities=27% Similarity=0.542 Sum_probs=36.6
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccccccc
Q 003073 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (850)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr 71 (850)
...|.||-+.+- ++.+ . .|+--.|+.|.+--.+.++..||.|+.++..
T Consensus 23 ~~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILA-----DPVE-T-SCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCS-----SEEE-C-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhc-----CcEE-c-CCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 357999987752 2333 3 7899999999977677767899999999853
No 67
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=58.84 E-value=8.9 Score=31.85 Aligned_cols=50 Identities=22% Similarity=0.586 Sum_probs=35.4
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhc-CCCCCCCccccccc
Q 003073 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKD-GNQSCPQCKTRYKK 71 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERke-G~q~CPqCkt~Ykr 71 (850)
....|.||-+..- ++.+ -..|+--.|+.|.+--.+. +...||.|++++.+
T Consensus 14 ~~~~C~IC~~~~~-----~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 14 DELLCLICKDIMT-----DAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GGGSCSSSCCCCT-----TCEE-CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCcCCChHHh-----CCeE-cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 3458999977643 2322 3348999999999766553 45799999997654
No 68
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=58.64 E-value=3.4 Score=34.25 Aligned_cols=49 Identities=31% Similarity=0.771 Sum_probs=34.6
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhc------CCCCCCCccccccc
Q 003073 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKD------GNQSCPQCKTRYKK 71 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERke------G~q~CPqCkt~Ykr 71 (850)
....|.||-+..-- +.+ . .|+--.|+.|.+--.+. +...||.|++++..
T Consensus 11 ~~~~C~IC~~~~~~-----p~~-l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLELLTE-----PLS-L-DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEECSS-----CCC-C-SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCcccCC-----eeE-C-CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 34589999887421 222 2 68889999999744333 37899999999853
No 69
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=57.56 E-value=6.9 Score=34.96 Aligned_cols=46 Identities=15% Similarity=0.072 Sum_probs=34.0
Q ss_pred CccccccCCCcccCCCCCceeecCCCC-CCcchhhhHhHHhcCCCCCCCcccccc
Q 003073 17 GQVCQICGDNVGKTVDGNPFVACDVCA-FPVCRPCYEYERKDGNQSCPQCKTRYK 70 (850)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FvAC~eC~-FpVCRpCYEyERkeG~q~CPqCkt~Yk 70 (850)
.-+|.||.+- +. ++.+. .|+ .-.||.|-+--.++ +..||.|++++.
T Consensus 22 ~~~CpI~~~~-m~----dPV~~--~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~ 68 (98)
T 1wgm_A 22 EFLDPIMSTL-MC----DPVVL--PSSRVTVDRSTIARHLLS-DQTDPFNRSPLT 68 (98)
T ss_dssp TTBCTTTCSB-CS----SEEEC--TTTCCEEEHHHHHHHTTT-SCBCTTTCSBCC
T ss_pred hcCCcCcccc-cc----CCeEC--CCCCeEECHHHHHHHHHh-CCCCCCCCCCCC
Confidence 4589999753 33 24443 478 99999999766655 689999999884
No 70
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=57.11 E-value=1.8 Score=37.00 Aligned_cols=41 Identities=22% Similarity=0.358 Sum_probs=31.1
Q ss_pred eeecCCCCCCcchhhhHhHHhcCCCCCCCccccccccCCCCcccCC
Q 003073 36 FVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGD 81 (850)
Q Consensus 36 FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr~kGs~rv~gd 81 (850)
+.+| |+|+.=.+|...+|.-+|+.|+..|--..|-|..--|
T Consensus 10 iL~C-----P~ck~~L~~~~~~g~LvC~~c~~~YPI~dGIPvmL~~ 50 (67)
T 2jny_A 10 VLAC-----PKDKGPLRYLESEQLLVNERLNLAYRIDDGIPVLLID 50 (67)
T ss_dssp CCBC-----TTTCCBCEEETTTTEEEETTTTEEEEEETTEECCCSS
T ss_pred HhCC-----CCCCCcCeEeCCCCEEEcCCCCccccCCCCEeeeChh
Confidence 4566 4444434555567888999999999999999988877
No 71
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=56.45 E-value=4.4 Score=36.45 Aligned_cols=56 Identities=25% Similarity=0.665 Sum_probs=40.4
Q ss_pred ccCCccccccCCCcccC-CCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccccccc
Q 003073 14 NVGGQVCQICGDNVGKT-VDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (850)
Q Consensus 14 ~~~~~~C~iCgd~Vg~~-~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr 71 (850)
..+...|.||-+.+.-. +.+...+.+ .|+-..|..|.+--.+. +..||.|++.+..
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 125 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEE-TTSBEEEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCCccccccccCcceEeC-CCCChhhHHHHHHHHHc-CCCCCCCCCcCCh
Confidence 34566899998875543 345555655 89999999999654444 4799999999853
No 72
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=55.30 E-value=6.1 Score=45.36 Aligned_cols=38 Identities=18% Similarity=0.428 Sum_probs=32.0
Q ss_pred cccCCccccccCCCc-ccCCCCCceeecCCCCCCcchhhhHh
Q 003073 13 KNVGGQVCQICGDNV-GKTVDGNPFVACDVCAFPVCRPCYEY 53 (850)
Q Consensus 13 ~~~~~~~C~iCgd~V-g~~~~Ge~FvAC~eC~FpVCRpCYEy 53 (850)
.-.....|..|++-+ |+.-.| ..|..|+|.||+-|.+.
T Consensus 525 ~~~~~t~C~~C~~~l~gl~~qg---~~C~~C~~~vHk~C~~~ 563 (587)
T 3ky9_A 525 SFEETTSCKACQMLLRGTFYQG---YRCHRCRASAHKECLGR 563 (587)
T ss_dssp CCSSCCBCTTTCSBCCSSSCCE---EEETTTCCEECSGGGGG
T ss_pred eCCCCcccccccccccccccCC---cCCCCCCCccchhhhhc
Confidence 345667999999997 887666 79999999999999965
No 73
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.30 E-value=11 Score=30.91 Aligned_cols=50 Identities=20% Similarity=0.462 Sum_probs=35.0
Q ss_pred ccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccccccc
Q 003073 14 NVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (850)
Q Consensus 14 ~~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr 71 (850)
......|.||-+.+.- + |.. .|+--.|+.|..--.+. +..||-|+.++..
T Consensus 12 ~~~~~~C~IC~~~~~~-----~-~~~-~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVH-----P-VSL-PCKHVFCYLCVKGASWL-GKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSS-----E-EEE-TTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCC-----C-EEc-cCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence 3456689999987521 2 222 47888999999643333 4899999999863
No 74
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.97 E-value=9.4 Score=30.97 Aligned_cols=48 Identities=25% Similarity=0.685 Sum_probs=34.9
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCcccccccc
Q 003073 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr~ 72 (850)
....|.||-+...- ...+ |+--.|+.|..- .-..+..||-|+++....
T Consensus 14 ~~~~C~IC~~~~~~-----~~~~---CgH~fc~~Ci~~-~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 14 DEEECCICMDGRAD-----LILP---CAHSFCQKCIDK-WSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCSSSCCSCCS-----EEET---TTEEECHHHHHH-SSCCCSSCHHHHHCTTCC
T ss_pred CCCCCeeCCcCccC-----cccC---CCCcccHHHHHH-HHHCcCcCCCcCCcccCC
Confidence 45689999887432 4444 677789999953 334789999999988643
No 75
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=53.05 E-value=14 Score=29.16 Aligned_cols=46 Identities=22% Similarity=0.543 Sum_probs=32.4
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCcccccccc
Q 003073 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr~ 72 (850)
....|.||-+..-- -... .|+--.|+.|..- ....||.|++.....
T Consensus 5 ~~~~C~IC~~~~~~----p~~l---~CgH~fC~~Ci~~----~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 5 QFLRCQQCQAEAKC----PKLL---PCLHTLCSGCLEA----SGMQCPICQAPWPLG 50 (56)
T ss_dssp CCSSCSSSCSSCBC----CSCS---TTSCCSBTTTCSS----SSSSCSSCCSSSSCC
T ss_pred cCCCceEeCCccCC----eEEc---CCCCcccHHHHcc----CCCCCCcCCcEeecC
Confidence 34579999886531 1222 4677889999744 678999999988654
No 76
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=52.29 E-value=13 Score=33.92 Aligned_cols=55 Identities=20% Similarity=0.384 Sum_probs=36.6
Q ss_pred cCCccccccCCCcccC----------CCCC-ceeecCCCCCCcchhhhHhHHhcCCCCCCCcccccc
Q 003073 15 VGGQVCQICGDNVGKT----------VDGN-PFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (850)
Q Consensus 15 ~~~~~C~iCgd~Vg~~----------~~Ge-~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Yk 70 (850)
.....|.||-+.+... ..|+ .-+.--.|+---++.|.. ..-..+..||-|+..++
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~-~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCIS-RWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHH-HHHTTCSBCSSSCSBCC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHH-HHHHcCCcCcCCCCcce
Confidence 3557899999886643 1122 122223789999999984 43345789999999964
No 77
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=51.95 E-value=7.9 Score=32.82 Aligned_cols=30 Identities=20% Similarity=0.431 Sum_probs=23.3
Q ss_pred cCCccccccCCCcccCCCCCceeecCCCCCCc
Q 003073 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPV 46 (850)
Q Consensus 15 ~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpV 46 (850)
.-.-+|.-||.++.+... .-+-|.+|++.|
T Consensus 19 ~v~Y~C~~Cg~~~~l~~~--~~iRC~~CG~RI 48 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQAK--EVIRCRECGHRV 48 (63)
T ss_dssp CCCCBCSSSCCBCCCCSS--SCCCCSSSCCCC
T ss_pred CeEEECCCCCCeeecCCC--CceECCCCCcEE
Confidence 445689999999988853 338899999876
No 78
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.27 E-value=11 Score=33.11 Aligned_cols=41 Identities=24% Similarity=0.611 Sum_probs=33.4
Q ss_pred ccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHh
Q 003073 14 NVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERK 56 (850)
Q Consensus 14 ~~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERk 56 (850)
+-+...|..|+...|+- ++--+.|..|...||+.|-.+.+.
T Consensus 22 ~~~~r~CarC~~~LG~l--~~~g~~C~~Ck~rVC~~Crv~~~~ 62 (76)
T 2csz_A 22 HYSDRTCARCQESLGRL--SPKTNTCRGCNHLVCRDCRIQESN 62 (76)
T ss_dssp TCCCCBCSSSCCBCSSS--CTTTSEETTTTEECCTTSEEECST
T ss_pred CCCccchhhhCcccccc--ccCCCcCcccChhhcccccccCCC
Confidence 45666999999999986 444578999999999999877644
No 79
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=49.35 E-value=11 Score=38.87 Aligned_cols=48 Identities=21% Similarity=0.688 Sum_probs=39.0
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhH-HhcCCCCCCCcccccc
Q 003073 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE-RKDGNQSCPQCKTRYK 70 (850)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyE-RkeG~q~CPqCkt~Yk 70 (850)
-..|.+|-+-|..+ +.|..|+-..=+.|+.-- +..++..||.|++...
T Consensus 180 i~~C~iC~~iv~~g------~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQG------QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSSC------EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCcCcchhhHHhCC------cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 56899999998853 889889999999999654 4456779999999874
No 80
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=49.30 E-value=8.6 Score=41.72 Aligned_cols=38 Identities=21% Similarity=0.488 Sum_probs=31.2
Q ss_pred ccccCCccccccCCCc-ccCCCCCceeecCCCCCCcchhhhH
Q 003073 12 IKNVGGQVCQICGDNV-GKTVDGNPFVACDVCAFPVCRPCYE 52 (850)
Q Consensus 12 ~~~~~~~~C~iCgd~V-g~~~~Ge~FvAC~eC~FpVCRpCYE 52 (850)
........|..|+.-+ |+...| ..|..|++.||+.|..
T Consensus 352 ~~~~~~t~C~~C~~~~~g~~~qg---~~C~~C~~~~h~~C~~ 390 (406)
T 2vrw_B 352 FSFEETTSCKACQMLLRGTFYQG---YRCYRCRAPAHKECLG 390 (406)
T ss_dssp ECCSSCCBCTTTCCBCCSSSSCE---EEETTTCCEECGGGGG
T ss_pred ccCCCCCCCccccchhceeCCCC---CCCCCCcCccchhhhh
Confidence 3445678999999997 776655 5799999999999995
No 81
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=48.90 E-value=7.3 Score=32.95 Aligned_cols=54 Identities=28% Similarity=0.584 Sum_probs=37.1
Q ss_pred cCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHH---hcCCCCCCCcccccccc
Q 003073 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYER---KDGNQSCPQCKTRYKKH 72 (850)
Q Consensus 15 ~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyER---keG~q~CPqCkt~Ykr~ 72 (850)
.....|.+|+.. .+|+..|.|..|.--.=-.|..... .+|.-.||.|...-++.
T Consensus 16 ~~~~~C~~C~~~----~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 16 NQIWICPGCNKP----DDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD 72 (75)
T ss_dssp CEEECBTTTTBC----CSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred CCCcCCCCCCCC----CCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhc
Confidence 344579999865 3688899999885443345654332 34788999998875543
No 82
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=48.76 E-value=2.1 Score=36.86 Aligned_cols=41 Identities=24% Similarity=0.650 Sum_probs=32.2
Q ss_pred eeecCCCCCCcchhhhHhHHhcCCCCCCCccccccccCCCCcccCC
Q 003073 36 FVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGD 81 (850)
Q Consensus 36 FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr~kGs~rv~gd 81 (850)
+.+| |+|+.=.+|...+|.-.|+.|+..|--..|-|..--|
T Consensus 8 iL~C-----P~ck~~L~~~~~~~~LiC~~cg~~YPI~dGIPvmL~~ 48 (70)
T 2js4_A 8 ILVC-----PVCKGRLEFQRAQAELVCNADRLAFPVRDGVPIMLEA 48 (70)
T ss_dssp CCBC-----TTTCCBEEEETTTTEEEETTTTEEEEEETTEECCCGG
T ss_pred heEC-----CCCCCcCEEeCCCCEEEcCCCCceecCCCCeeeeChh
Confidence 5667 5555555667778889999999999999998887766
No 83
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.56 E-value=12 Score=31.07 Aligned_cols=46 Identities=20% Similarity=0.589 Sum_probs=32.5
Q ss_pred ccCCccccccCCCcccCCCCCceeecCCCCCC-cchhhhHhHHhcCCCCCCCccccccc
Q 003073 14 NVGGQVCQICGDNVGKTVDGNPFVACDVCAFP-VCRPCYEYERKDGNQSCPQCKTRYKK 71 (850)
Q Consensus 14 ~~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~Fp-VCRpCYEyERkeG~q~CPqCkt~Ykr 71 (850)
......|.||-+.. .--+|++| +=- +|..|.. ..+.||-|+++...
T Consensus 12 ~~~~~~C~IC~~~~----~~~v~~pC---gH~~~C~~C~~-----~~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGT----VNWVLLPC---RHTCLCDGCVK-----YFQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSC----CCCEETTT---TBCCSCTTHHH-----HCSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCC----CCEEEECC---CChhhhHHHHh-----cCCCCCCCCcchhc
Confidence 34567899998753 12356666 444 7999997 24899999998854
No 84
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=47.96 E-value=11 Score=41.83 Aligned_cols=47 Identities=30% Similarity=0.718 Sum_probs=33.1
Q ss_pred ccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccccccc
Q 003073 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (850)
Q Consensus 18 ~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr 71 (850)
..|.||-+..- + -... .|+=-.|..|..--.+.++..||-|+++...
T Consensus 333 ~~C~ICle~~~---~-pv~l---pCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 333 QLCKICAENDK---D-VKIE---PCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SBCTTTSSSBC---C-EEEE---TTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCccCcCCC---C-eEEe---CCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 58999977651 1 1233 4566669999954444478899999998865
No 85
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.60 E-value=10 Score=32.21 Aligned_cols=53 Identities=23% Similarity=0.444 Sum_probs=32.2
Q ss_pred CccccccCCccccccCCCccc----CCCCCce----eecCCCCCCcchhhhHhHHhcCCCCCCC
Q 003073 9 VKSIKNVGGQVCQICGDNVGK----TVDGNPF----VACDVCAFPVCRPCYEYERKDGNQSCPQ 64 (850)
Q Consensus 9 ~k~~~~~~~~~C~iCgd~Vg~----~~~Ge~F----vAC~eC~FpVCRpCYEyERkeG~q~CPq 64 (850)
.+|.+......|..|+..|.. .+.|..+ ..|.+|.-++=-.+| -++|.-.|..
T Consensus 7 ~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~---~~~g~~yC~~ 67 (80)
T 2dj7_A 7 GKPIKIRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTGEYI---SKDGVPYCES 67 (80)
T ss_dssp CCCCCCSSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSSCCE---EETTEEECTT
T ss_pred CCCcCCCCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCCCeE---EECCEEECHH
Confidence 467777788899999999863 2345444 357778665533222 2455444443
No 86
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=46.40 E-value=7.6 Score=34.84 Aligned_cols=54 Identities=28% Similarity=0.723 Sum_probs=39.3
Q ss_pred CCccccccCCCcccCC-CCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccccccc
Q 003073 16 GGQVCQICGDNVGKTV-DGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~-~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr 71 (850)
+...|.||-+...-.. +|+..+.- .|+--.|+.|.+--.+. +..||.|+..+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEE-TTCCEEEHHHHHHHHTT-CSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEec-CCCChhhHHHHHHHHHh-CCCCCCCCCcCcc
Confidence 4558999998865432 45544554 78999999999655444 4699999999864
No 87
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=45.87 E-value=8.2 Score=46.36 Aligned_cols=58 Identities=29% Similarity=0.720 Sum_probs=42.6
Q ss_pred ccCCccccccCCCcccCCC---CCceeecCCCC--------------------CCcchhhh-HhH----Hh--cCCCCCC
Q 003073 14 NVGGQVCQICGDNVGKTVD---GNPFVACDVCA--------------------FPVCRPCY-EYE----RK--DGNQSCP 63 (850)
Q Consensus 14 ~~~~~~C~iCgd~Vg~~~~---Ge~FvAC~eC~--------------------FpVCRpCY-EyE----Rk--eG~q~CP 63 (850)
.....+|.-|=.++---.| .-+|+.|..|| ||.|..|. ||+ |+ ----+||
T Consensus 108 ~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~ 187 (761)
T 3vth_A 108 SPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACF 187 (761)
T ss_dssp CCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCT
T ss_pred CCCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCC
Confidence 3456789999888753222 56899999998 99999996 354 33 1225899
Q ss_pred Cccccccc
Q 003073 64 QCKTRYKK 71 (850)
Q Consensus 64 qCkt~Ykr 71 (850)
.|+=++.-
T Consensus 188 ~CGP~l~l 195 (761)
T 3vth_A 188 DCGPSLSF 195 (761)
T ss_dssp TTSCCEEE
T ss_pred ccCCeeEE
Confidence 99998854
No 88
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=44.11 E-value=10 Score=30.98 Aligned_cols=53 Identities=19% Similarity=0.405 Sum_probs=34.3
Q ss_pred ccccCCccccccCCCcccCCCCCceeecCCCCCC-cchhhhHhHHhcCCCCCCCcccccc
Q 003073 12 IKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFP-VCRPCYEYERKDGNQSCPQCKTRYK 70 (850)
Q Consensus 12 ~~~~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~Fp-VCRpCYEyERkeG~q~CPqCkt~Yk 70 (850)
+.......|.||-+...- -+|+.- .|+-- .|..|.+--. ..+..||-|+.+..
T Consensus 3 l~~~~~~~C~IC~~~~~~----~~~~~~-pCgH~~~C~~C~~~~~-~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 3 LPLNAIEPCVICQGRPKN----GCIVHG-KTGHLMACFTCAKKLK-KRNKPCPVCRQPIQ 56 (64)
T ss_dssp --CGGGSCCTTTSSSCSC----EEEEET-TEEEEEECHHHHHHHH-HTTCCCTTTCCCCC
T ss_pred CCCCCcCCCCcCCCCCCC----EEEECC-CCCChhhHHHHHHHHH-HcCCcCCCcCcchh
Confidence 344566689999886321 145511 34655 6999997544 45678999999875
No 89
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=42.31 E-value=8.8 Score=36.38 Aligned_cols=46 Identities=22% Similarity=0.562 Sum_probs=36.3
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCccccc
Q 003073 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 69 (850)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Y 69 (850)
.-.|.||.+-+- ++ |.. .|+--.|+.|.+--.+.++..||.|+++.
T Consensus 31 ~~~C~IC~~~~~-----~p-v~~-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 31 KYLCSACRNVLR-----RP-FQA-QCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGBCTTTCSBCS-----SE-EEC-TTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCCCCCChhhc-----Cc-EEC-CCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 348999987642 23 334 89999999999887788888999999875
No 90
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.24 E-value=15 Score=30.73 Aligned_cols=43 Identities=33% Similarity=0.715 Sum_probs=30.0
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCC-cchhhhHhHHhcCCCCCCCccccccc
Q 003073 17 GQVCQICGDNVGKTVDGNPFVACDVCAFP-VCRPCYEYERKDGNQSCPQCKTRYKK 71 (850)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FvAC~eC~Fp-VCRpCYEyERkeG~q~CPqCkt~Ykr 71 (850)
...|.||-+..- --++++ |+-- .|+.|.+ ....||-|+++...
T Consensus 25 ~~~C~IC~~~~~----~~~~~p---CgH~~~C~~C~~-----~~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNI----AIVFVP---CGHLVTCKQCAE-----AVDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCC----CBCCSS---SCCCCBCHHHHH-----HCSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCC----CEEEec---CCCHHHHHHHhh-----CCCCCccCCceecC
Confidence 347999987631 123444 5666 7999984 24899999998854
No 91
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=41.30 E-value=11 Score=32.24 Aligned_cols=53 Identities=28% Similarity=0.669 Sum_probs=40.9
Q ss_pred ccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhH-HhcCCCCCCCcccc
Q 003073 14 NVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE-RKDGNQSCPQCKTR 68 (850)
Q Consensus 14 ~~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyE-RkeG~q~CPqCkt~ 68 (850)
..+...|.||++. -..+++..+.|..|.-.+=..||.-. .-+|.=.||.|...
T Consensus 13 ~~~~~~C~vC~~~--~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDG--ESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCC--CCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCC--CCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 4566799999874 23466788999999888888998754 44788999999753
No 92
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=41.30 E-value=25 Score=32.10 Aligned_cols=52 Identities=19% Similarity=0.463 Sum_probs=39.8
Q ss_pred CccccccCCCccc--CCCCCceeecCCCCCCcchhhhHh------HHhcCCCCCCCcccc
Q 003073 17 GQVCQICGDNVGK--TVDGNPFVACDVCAFPVCRPCYEY------ERKDGNQSCPQCKTR 68 (850)
Q Consensus 17 ~~~C~iCgd~Vg~--~~~Ge~FvAC~eC~FpVCRpCYEy------ERkeG~q~CPqCkt~ 68 (850)
..+|.+|...=.. ..+++.++.|..|+-..=..|..+ ..++++=.||.|++=
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C 64 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTC 64 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCB
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCcc
Confidence 4589999765333 356778999999988887888864 356889999999843
No 93
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=40.50 E-value=21 Score=29.35 Aligned_cols=49 Identities=24% Similarity=0.718 Sum_probs=37.4
Q ss_pred ccccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHh---HHhcCCCCCCCccc
Q 003073 12 IKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEY---ERKDGNQSCPQCKT 67 (850)
Q Consensus 12 ~~~~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEy---ERkeG~q~CPqCkt 67 (850)
+...+...|.+|++ |...+.|..|.-..=-.|..- +.-+|.-.||.|..
T Consensus 6 ~~~~~~~~C~vC~~-------~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 6 YETDHQDYCEVCQQ-------GGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CSSCCCSSCTTTSC-------CSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred ccCCCCCCCccCCC-------CCcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 34556679999997 246788999987777788875 34578999999974
No 94
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=40.31 E-value=14 Score=30.83 Aligned_cols=49 Identities=24% Similarity=0.650 Sum_probs=36.0
Q ss_pred cccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhH--h-HHhcCCCCCCCcccc
Q 003073 13 KNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYE--Y-ERKDGNQSCPQCKTR 68 (850)
Q Consensus 13 ~~~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYE--y-ERkeG~q~CPqCkt~ 68 (850)
...+...|.+|++. | ..+.|..|.-..=..|.. . +.-+|.-.||.|...
T Consensus 4 ~~~~~~~C~vC~~~------g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 4 AQKNEDECAVCRDG------G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCSCCCSBSSSSCC------S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCCCccCCCC------C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 44567799999973 3 578999997666667775 2 244688899999754
No 95
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.21 E-value=44 Score=25.65 Aligned_cols=43 Identities=21% Similarity=0.643 Sum_probs=30.5
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhc--CCCCCCCc
Q 003073 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKD--GNQSCPQC 65 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERke--G~q~CPqC 65 (850)
....|.||-+..--. ... .|+--.|+.|..--.++ ++..||.|
T Consensus 14 ~~~~C~IC~~~~~~p----~~~---~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEP----VII---ECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSC----CCC---SSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCcc----EeC---CCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 455899999875321 222 57888899999655443 77899988
No 96
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.55 E-value=25 Score=29.81 Aligned_cols=64 Identities=23% Similarity=0.563 Sum_probs=36.6
Q ss_pred ccccccCCccccccCCCccc----CCCCCce----eecCCCCCCcchhhhHhHHhcCCCCCCCccccccccCCCC
Q 003073 10 KSIKNVGGQVCQICGDNVGK----TVDGNPF----VACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSP 76 (850)
Q Consensus 10 k~~~~~~~~~C~iCgd~Vg~----~~~Ge~F----vAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr~kGs~ 76 (850)
.|.+......|..|+..|.. .+.|..| ..|.+|.-++=.-.|-.-.++|.- =|+.-|.+...+|
T Consensus 8 ~~~~~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~---yC~~~y~~~~~~~ 79 (82)
T 2co8_A 8 QHQEAGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHF---YCLQHLPQTDSGP 79 (82)
T ss_dssp CCCCCCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCC---EETTTCCCCCCCC
T ss_pred CCcCCCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEE---EChHHHHhhhcCC
Confidence 34445567799999999853 3456554 245555555444443110245653 4566777766655
No 97
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=38.05 E-value=22 Score=30.55 Aligned_cols=56 Identities=16% Similarity=0.398 Sum_probs=39.8
Q ss_pred ccccccCCccccccCCCcccCCCCCceeecC--CCCCCcchhhhHhHHhc--------CCCCCCCcccccc
Q 003073 10 KSIKNVGGQVCQICGDNVGKTVDGNPFVACD--VCAFPVCRPCYEYERKD--------GNQSCPQCKTRYK 70 (850)
Q Consensus 10 k~~~~~~~~~C~iCgd~Vg~~~~Ge~FvAC~--eC~FpVCRpCYEyERke--------G~q~CPqCkt~Yk 70 (850)
-+........| |||.. +.+ ...|+|. .|..=.=-.|.-+..+. ..-.||.|+.+-+
T Consensus 9 d~~~~~~~~~C-iC~~~---~~~-g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~ 74 (78)
T 1wew_A 9 DPFQPEIKVRC-VCGNS---LET-DSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSG 74 (78)
T ss_dssp CSSSCCCCCCC-SSCCC---CCC-SCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCS
T ss_pred cccCCCCCEEe-ECCCc---CCC-CCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccC
Confidence 34444566788 89986 234 4899998 88776666888776543 5789999987544
No 98
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.89 E-value=55 Score=28.05 Aligned_cols=37 Identities=16% Similarity=0.328 Sum_probs=24.2
Q ss_pred CccccccCCccccccCCCccc----CCCCCcee----ecCCCCCC
Q 003073 9 VKSIKNVGGQVCQICGDNVGK----TVDGNPFV----ACDVCAFP 45 (850)
Q Consensus 9 ~k~~~~~~~~~C~iCgd~Vg~----~~~Ge~Fv----AC~eC~Fp 45 (850)
.++.+......|..|+..|.- .+.|..|- .|.+|.-+
T Consensus 7 ~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~ 51 (91)
T 2d8y_A 7 GMKFQAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNK 51 (91)
T ss_dssp SSCSCSSSSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCB
T ss_pred CCccCCCCCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCC
Confidence 455666678899999999853 34666542 35666433
No 99
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=37.82 E-value=12 Score=30.16 Aligned_cols=32 Identities=28% Similarity=0.756 Sum_probs=26.3
Q ss_pred CccccccCCCcccCCCCCceeecCCC-CCCcchhhhHhH
Q 003073 17 GQVCQICGDNVGKTVDGNPFVACDVC-AFPVCRPCYEYE 54 (850)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FvAC~eC-~FpVCRpCYEyE 54 (850)
+..|..|+.+|| .-.-|.+| .|-+|..||.-.
T Consensus 6 ~~~Cd~C~~~ig------~R~~C~~C~dyDLC~~C~~~~ 38 (52)
T 1tot_A 6 VYTCNECKHHVE------TRWHCTVCEDYDLCINCYNTK 38 (52)
T ss_dssp CEEETTTTEEES------SEEEESSSSSCEECHHHHHHH
T ss_pred EEECCCCCCCCc------ceEEcCCCCCchhHHHHHhCC
Confidence 457999999863 46899999 899999999653
No 100
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=37.69 E-value=24 Score=32.10 Aligned_cols=53 Identities=19% Similarity=0.292 Sum_probs=32.2
Q ss_pred CCccccccCCCccc----CCCCCcee----ecCCCCC---------------CcchhhhHhHHhcCC-CCCCCcccccc
Q 003073 16 GGQVCQICGDNVGK----TVDGNPFV----ACDVCAF---------------PVCRPCYEYERKDGN-QSCPQCKTRYK 70 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~----~~~Ge~Fv----AC~eC~F---------------pVCRpCYEyERkeG~-q~CPqCkt~Yk 70 (850)
....|..|+..|.- ++.|..+- .|.+|.= |.|+.||.- +-+. ..|-.|+.+-.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~--~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIR--LFGNSGAGGSGGHMGS 80 (122)
T ss_dssp CCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHH--HHCCCCSSSCSSCCSC
T ss_pred CCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHH--HcCCCCccccCCCCcC
Confidence 45678888877642 23444332 3666643 348999843 3443 37999988763
No 101
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=35.57 E-value=20 Score=32.57 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=16.5
Q ss_pred CCcchhhhHhHHhcCC-CCCCCccccc
Q 003073 44 FPVCRPCYEYERKDGN-QSCPQCKTRY 69 (850)
Q Consensus 44 FpVCRpCYEyERkeG~-q~CPqCkt~Y 69 (850)
-|.|+.||.- .-+. ..|..|+++-
T Consensus 52 ~~yC~~~y~~--~~~~~~~C~~C~~~I 76 (131)
T 2xjy_A 52 RKLCRRDYLR--LFGQDGLCASCDKRI 76 (131)
T ss_dssp EEECHHHHHH--HHCCCEECTTTCCEE
T ss_pred EEeecCchhh--hCCCccChhhcCCcc
Confidence 3579999842 2332 3899999876
No 102
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=35.51 E-value=7.8 Score=37.04 Aligned_cols=13 Identities=23% Similarity=0.631 Sum_probs=10.2
Q ss_pred CCCCCCccccccc
Q 003073 59 NQSCPQCKTRYKK 71 (850)
Q Consensus 59 ~q~CPqCkt~Ykr 71 (850)
...||.|+.+--.
T Consensus 107 ~~~CP~Cgs~~~~ 119 (139)
T 3a43_A 107 FLACPKCGSHDFE 119 (139)
T ss_dssp GCSCSSSSCCCEE
T ss_pred CCcCccccCCccE
Confidence 5789999988543
No 103
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=34.89 E-value=14 Score=44.40 Aligned_cols=59 Identities=31% Similarity=0.760 Sum_probs=42.8
Q ss_pred ccCCccccccCCCcccCCC---CCceeecCCCC--------------------CCcchhhh-HhH----Hh--cCCCCCC
Q 003073 14 NVGGQVCQICGDNVGKTVD---GNPFVACDVCA--------------------FPVCRPCY-EYE----RK--DGNQSCP 63 (850)
Q Consensus 14 ~~~~~~C~iCgd~Vg~~~~---Ge~FvAC~eC~--------------------FpVCRpCY-EyE----Rk--eG~q~CP 63 (850)
.....+|.-|=.++---.| +=+|+-|..|| ||.|..|- ||+ || ----+||
T Consensus 103 ~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~ 182 (772)
T 4g9i_A 103 PPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACP 182 (772)
T ss_dssp CCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCT
T ss_pred CCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCc
Confidence 3566689999888643333 56899999995 99999996 455 33 1124999
Q ss_pred Ccccccccc
Q 003073 64 QCKTRYKKH 72 (850)
Q Consensus 64 qCkt~Ykr~ 72 (850)
.|+=++.-.
T Consensus 183 ~CGP~l~l~ 191 (772)
T 4g9i_A 183 VCGPSYRLY 191 (772)
T ss_dssp TTSCCEEEE
T ss_pred cCCceEEEE
Confidence 999887543
No 104
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=34.34 E-value=12 Score=33.09 Aligned_cols=57 Identities=21% Similarity=0.460 Sum_probs=43.1
Q ss_pred cccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhH-------HhcCCCCCCCccccccc
Q 003073 13 KNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE-------RKDGNQSCPQCKTRYKK 71 (850)
Q Consensus 13 ~~~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyE-------RkeG~q~CPqCkt~Ykr 71 (850)
..-....|.+|+.. -.++++..+-|..|.-..=-.|+.=- .-+|.=.|+.|....++
T Consensus 12 ~~e~~~~C~vC~~~--~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 12 AMEMGLACVVCRQM--TVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HHHHCCSCSSSCCC--CCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred cCCCCCcCCCCCCC--CCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 33456799999984 33455678999999888888888632 45899999999877654
No 105
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=33.67 E-value=21 Score=31.55 Aligned_cols=53 Identities=28% Similarity=0.676 Sum_probs=40.8
Q ss_pred cCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhH-HhcCCCCCCCccccc
Q 003073 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE-RKDGNQSCPQCKTRY 69 (850)
Q Consensus 15 ~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyE-RkeG~q~CPqCkt~Y 69 (850)
.+...|.||++. -..+++..+-|..|.-.+=..||.-. .-+|.=.||.|...-
T Consensus 23 ~~~~~C~vC~~~--~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDG--ESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSS--SSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCC--CCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 456799999964 22456789999999888788998653 457899999997643
No 106
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=33.18 E-value=21 Score=29.21 Aligned_cols=54 Identities=19% Similarity=0.557 Sum_probs=35.3
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHh----cCCCCCCCcccccccc
Q 003073 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERK----DGNQSCPQCKTRYKKH 72 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERk----eG~q~CPqCkt~Ykr~ 72 (850)
.+..|.+|+..- .+++..|+|..|.-=.=-.|...... .+.-.||.|..+..|.
T Consensus 5 e~~~C~~C~~~~---~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~~~ 62 (64)
T 1we9_A 5 SSGQCGACGESY---AADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSGPS 62 (64)
T ss_dssp SCCCCSSSCCCC---CSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTCSS
T ss_pred CCCCCCCCCCcc---CCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcCCCC
Confidence 456899998753 24678999998854433445544322 2678899998765443
No 107
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.08 E-value=52 Score=28.26 Aligned_cols=50 Identities=24% Similarity=0.754 Sum_probs=35.9
Q ss_pred cCCccccccCCCcccCCCCCceeecCCCCCCcchhhhH-hHHhcCCCCCCCcccccc
Q 003073 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYE-YERKDGNQSCPQCKTRYK 70 (850)
Q Consensus 15 ~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYE-yERkeG~q~CPqCkt~Yk 70 (850)
.....|.||-+.|.. | ..|..|+-..=..|.. |-+..++..||.|++...
T Consensus 13 ~~i~~C~IC~~~i~~---g---~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQ---G---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSS---S---EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHccc---C---CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 345689999999863 3 4677777666677874 234455689999998874
No 108
>1m4f_A Hepcidin; strand-loop-strand, beta-sheet, hairpin loop, antimicrobial protein; NMR {Synthetic} SCOP: j.3.1.8 PDB: 2kef_A 3h0t_C
Probab=32.83 E-value=4.1 Score=29.06 Aligned_cols=23 Identities=30% Similarity=0.654 Sum_probs=15.3
Q ss_pred CCCcchhhhHhHHhcCCCCCCCccc
Q 003073 43 AFPVCRPCYEYERKDGNQSCPQCKT 67 (850)
Q Consensus 43 ~FpVCRpCYEyERkeG~q~CPqCkt 67 (850)
.|||||+|+-=-++ ..+...|+|
T Consensus 3 ~~~iC~~CC~cc~~--~~CG~cC~~ 25 (26)
T 1m4f_A 3 HFPICIFCCGCCHR--SKCGMCCKT 25 (26)
T ss_dssp SSCCCEEEECSSSS--SSEEEECCC
T ss_pred cCCccceecccCCC--CCcCCeeCC
Confidence 59999999944443 455555654
No 109
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=32.68 E-value=25 Score=30.45 Aligned_cols=49 Identities=22% Similarity=0.520 Sum_probs=34.7
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhH----HhcCC---CCCCC--ccccc
Q 003073 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE----RKDGN---QSCPQ--CKTRY 69 (850)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyE----RkeG~---q~CPq--Ckt~Y 69 (850)
...|.||-+++- +..++.-..|+=--|+.|..-- .++|. -.||+ |+..+
T Consensus 5 ~~~C~IC~~~~~----~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 5 SSGCKLCLGEYP----VEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62 (94)
T ss_dssp BCCCSSSCCCCB----GGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred CcCCcccCcccc----cccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCC
Confidence 458999988753 3345554468889999997543 24664 48999 99874
No 110
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=32.63 E-value=2.6 Score=36.10 Aligned_cols=41 Identities=17% Similarity=0.561 Sum_probs=31.6
Q ss_pred eeecCCCCCCcchhhhHhHHhcCCCCCCCccccccccCCCCcccCC
Q 003073 36 FVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGD 81 (850)
Q Consensus 36 FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Ykr~kGs~rv~gd 81 (850)
..+| |+|+-=.+|.+.+|.-.|+.|+..|--..|-|..--|
T Consensus 8 iL~C-----P~ck~~L~~~~~~~~LiC~~cg~~YPI~dGIPvmL~~ 48 (68)
T 2hf1_A 8 ILVC-----PLCKGPLVFDKSKDELICKGDRLAFPIKDGIPMMLES 48 (68)
T ss_dssp ECBC-----TTTCCBCEEETTTTEEEETTTTEEEEEETTEECCCGG
T ss_pred heEC-----CCCCCcCeEeCCCCEEEcCCCCcEecCCCCeeeeChh
Confidence 5677 5555545666678888999999999998888877755
No 111
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=31.85 E-value=25 Score=29.29 Aligned_cols=43 Identities=33% Similarity=0.697 Sum_probs=30.4
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCC-cchhhhHhHHhcCCCCCCCccccccc
Q 003073 17 GQVCQICGDNVGKTVDGNPFVACDVCAFP-VCRPCYEYERKDGNQSCPQCKTRYKK 71 (850)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FvAC~eC~Fp-VCRpCYEyERkeG~q~CPqCkt~Ykr 71 (850)
...|.||-+..- --++.+ |+=- .|+.|..-- ..||-|++++..
T Consensus 24 ~~~C~iC~~~~~----~~~~~p---CgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNI----AIVFVP---CGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBC----CEEEET---TCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCC----CEEEcC---CCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 357999987632 123554 5777 899998432 899999998864
No 112
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.80 E-value=34 Score=28.81 Aligned_cols=38 Identities=18% Similarity=0.558 Sum_probs=24.0
Q ss_pred ccccCCccccccCCCcc---cCCCCCce----eecCCCCCCcchh
Q 003073 12 IKNVGGQVCQICGDNVG---KTVDGNPF----VACDVCAFPVCRP 49 (850)
Q Consensus 12 ~~~~~~~~C~iCgd~Vg---~~~~Ge~F----vAC~eC~FpVCRp 49 (850)
.......+|..|+..|. +.+.|..+ .-|..|.-++=..
T Consensus 10 ~~~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~ 54 (79)
T 2cor_A 10 ARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTAD 54 (79)
T ss_dssp CCCCCCCBCTTTCCBCCSCCCCCSSSCCCTTTSBCSSSCCBCCTT
T ss_pred hhccCCCCCccCCCEecceEEEECcceeCCCCCEeCCCCCccCCC
Confidence 34556789999999876 23445543 2477776555444
No 113
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=31.51 E-value=19 Score=30.92 Aligned_cols=12 Identities=17% Similarity=0.736 Sum_probs=7.3
Q ss_pred cccccCCCcccC
Q 003073 19 VCQICGDNVGKT 30 (850)
Q Consensus 19 ~C~iCgd~Vg~~ 30 (850)
+|.-||.++.+.
T Consensus 30 ~C~~CG~~~e~~ 41 (70)
T 1twf_L 30 ICAECSSKLSLS 41 (70)
T ss_dssp ECSSSCCEECCC
T ss_pred ECCCCCCcceeC
Confidence 566666665554
No 114
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=31.47 E-value=9.8 Score=44.67 Aligned_cols=45 Identities=9% Similarity=-0.062 Sum_probs=18.1
Q ss_pred cccccC-CCcccC--CCCCceeecCCCCCCcchhhhHhHHhcCCCCCCCcccc
Q 003073 19 VCQICG-DNVGKT--VDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 68 (850)
Q Consensus 19 ~C~iCg-d~Vg~~--~~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~ 68 (850)
.|..|| .++-.. ..|..|..| |+||-|+.-.-. +-....||+ +.+
T Consensus 574 ~CP~Cg~g~l~~r~~k~G~~f~gC--s~yp~C~f~~~~--~p~~~~Cp~-~~~ 621 (633)
T 2gai_A 574 FYLKCECGKTRSVKNDEIAVIDDG--KIFLGRKDSESG--SPDGRSVEG-KGN 621 (633)
T ss_dssp EEEECSSSCCEECCTTSBCEEETT--EEEC-----------------------
T ss_pred cCcccCCCcceeecccCCCeEEeC--CCCcCCCCeecC--CccCCcCCC-CCe
Confidence 499998 665443 467789999 566666544321 224478998 644
No 115
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=31.05 E-value=29 Score=28.48 Aligned_cols=47 Identities=28% Similarity=0.725 Sum_probs=35.3
Q ss_pred cCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHh---HHhcCCCCCCCcccc
Q 003073 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEY---ERKDGNQSCPQCKTR 68 (850)
Q Consensus 15 ~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEy---ERkeG~q~CPqCkt~ 68 (850)
.+...|.+|++ |...+.|..|.-..=-.|..- +.-+|.=.||.|..+
T Consensus 7 ~~~~~C~vC~~-------~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKD-------GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCC-------CSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCC-------CCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 45678999996 345789999987777778762 244788899999753
No 116
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=30.99 E-value=21 Score=38.86 Aligned_cols=43 Identities=28% Similarity=0.716 Sum_probs=31.0
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCC-cchhhhHhHHhcCCCCCCCccccccc
Q 003073 17 GQVCQICGDNVGKTVDGNPFVACDVCAFP-VCRPCYEYERKDGNQSCPQCKTRYKK 71 (850)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FvAC~eC~Fp-VCRpCYEyERkeG~q~CPqCkt~Ykr 71 (850)
...|.||-+..- .-++++ |+-- .|+.|..-- ..||-|+++..+
T Consensus 295 ~~~C~IC~~~~~----~~v~lp---CgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDKEV----SVVFIP---CGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSSBC----CEEEET---TCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CCCCCccCCcCC----ceEEcC---CCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 458999988742 123444 5777 899998532 789999999864
No 117
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=30.99 E-value=47 Score=29.27 Aligned_cols=57 Identities=18% Similarity=0.352 Sum_probs=39.9
Q ss_pred cccccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHh-----cCCCCCCCcccccc
Q 003073 11 SIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERK-----DGNQSCPQCKTRYK 70 (850)
Q Consensus 11 ~~~~~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERk-----eG~q~CPqCkt~Yk 70 (850)
-+.......|.+|+...++... ---|.-||.-+|..|-.+... .-..+|-.|-....
T Consensus 14 W~~d~~~~~C~~C~~~F~~~~R---rhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 75 (90)
T 3t7l_A 14 WVPDSEAPNCMNCQVKFTFTKR---RHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETIS 75 (90)
T ss_dssp CCCGGGCCBCTTTCCBCCSSSC---CEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHH
T ss_pred CcccccCCcCcCCCCcccchhh---CccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHH
Confidence 3666778899999998776532 267999999999999876532 22356666655544
No 118
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=30.35 E-value=27 Score=30.26 Aligned_cols=52 Identities=23% Similarity=0.586 Sum_probs=31.2
Q ss_pred cCCccccccCCCccc-----CCCCCcee----ecCCCC-------------CCcchhhhHhHHhcCCCCCCCccccc
Q 003073 15 VGGQVCQICGDNVGK-----TVDGNPFV----ACDVCA-------------FPVCRPCYEYERKDGNQSCPQCKTRY 69 (850)
Q Consensus 15 ~~~~~C~iCgd~Vg~-----~~~Ge~Fv----AC~eC~-------------FpVCRpCYEyERkeG~q~CPqCkt~Y 69 (850)
+.+..|..|+..|.. .+.|..+- .|..|. -+.|++||+ ++- ...|.+|+.+-
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~--~~~-~~~C~~C~~~I 76 (101)
T 2cup_A 3 SGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTT--RED-SPKCKGCFKAI 76 (101)
T ss_dssp SCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHT--TCC-CCBCSSSCCBC
T ss_pred CCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhh--hhc-CCccccCCCcc
Confidence 345678888887753 23343332 255552 256888883 222 36788898765
No 119
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=29.79 E-value=29 Score=34.71 Aligned_cols=54 Identities=20% Similarity=0.449 Sum_probs=36.6
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHh-----HHh-----cCCCCCCCccccc
Q 003073 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEY-----ERK-----DGNQSCPQCKTRY 69 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEy-----ERk-----eG~q~CPqCkt~Y 69 (850)
+|+.|.||+..-.-++.+...+.|..|..=+=..|-.. |.- +..=.||.|....
T Consensus 1 ~G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 1 SGNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp -CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 47899999876544444567999999987665566533 221 1357999997653
No 120
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=29.01 E-value=34 Score=26.72 Aligned_cols=45 Identities=29% Similarity=0.804 Sum_probs=32.2
Q ss_pred cccccCCCcccCCCCCceeecCCCCCCcchhhhH---hHHhcCCCCCCCccc
Q 003073 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYE---YERKDGNQSCPQCKT 67 (850)
Q Consensus 19 ~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYE---yERkeG~q~CPqCkt 67 (850)
.|.+|++. .+++..+.|..|.-..=-.|+. -+.-+|.-.||.|..
T Consensus 2 ~C~vC~~~----~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKK----GEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCS----SCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCC----CCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 59999875 2466789999997655566773 234468889999964
No 121
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=28.77 E-value=27 Score=37.15 Aligned_cols=50 Identities=18% Similarity=0.300 Sum_probs=35.8
Q ss_pred cCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhc-CCCCCCC--cccccc
Q 003073 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKD-GNQSCPQ--CKTRYK 70 (850)
Q Consensus 15 ~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERke-G~q~CPq--Ckt~Yk 70 (850)
...-+|.||.+-. -++. -...||---||.|.+--.++ |...||. |+.++.
T Consensus 179 ~~el~CPIcl~~f-----~DPV-ts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPY-----EAPL-ISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBC-----SSEE-EESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCcc-----cCCe-eeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 3445899999865 1233 23478988999999755544 5678999 999874
No 122
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=28.62 E-value=40 Score=28.33 Aligned_cols=45 Identities=27% Similarity=0.609 Sum_probs=35.1
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhH---HhcCCCCCCCccc
Q 003073 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE---RKDGNQSCPQCKT 67 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyE---RkeG~q~CPqCkt 67 (850)
.+..|.||++. | ..+-|..|.-..=-.|..-- .-+|.=.||.|..
T Consensus 11 ~~~~C~vC~~~------~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 11 PGARCGVCGDG------T-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp TTCCCTTTSCC------T-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CCCCcCCCCCC------C-eEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 45679999852 3 47889999988889998543 3378899999975
No 123
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.36 E-value=39 Score=29.44 Aligned_cols=46 Identities=24% Similarity=0.433 Sum_probs=32.5
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHHhc-----CCCCCCC--cccc
Q 003073 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKD-----GNQSCPQ--CKTR 68 (850)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyERke-----G~q~CPq--Ckt~ 68 (850)
.-+|.||.+- +. ++.+.- .|+.-.||.|-+--.++ +...||. |+..
T Consensus 7 ~~~CPI~~~~-~~----dPV~~~-~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 7 GFTCPITKEE-MK----KPVKNK-VCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CCBCTTTCSB-CS----SEEEES-SSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred EeECcCcCch-hc----CCEEcC-CCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3489999854 32 355542 68999999998765544 3468999 8866
No 124
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=28.13 E-value=41 Score=32.79 Aligned_cols=53 Identities=25% Similarity=0.586 Sum_probs=33.0
Q ss_pred cCCccccccCCCccc----CCCCCce----eecCCCCC---------------CcchhhhHhHHhcCCC-CCCCccccc
Q 003073 15 VGGQVCQICGDNVGK----TVDGNPF----VACDVCAF---------------PVCRPCYEYERKDGNQ-SCPQCKTRY 69 (850)
Q Consensus 15 ~~~~~C~iCgd~Vg~----~~~Ge~F----vAC~eC~F---------------pVCRpCYEyERkeG~q-~CPqCkt~Y 69 (850)
+...+|..|+..|.- .+.|..+ ..|..|.- |.|+.||. ++-+.+ .|..|+++.
T Consensus 3 l~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~--~~~~~~~~C~~C~~~I 79 (188)
T 1rut_X 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYI--RLFGNSGACSACGQSI 79 (188)
T ss_dssp -CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHH--HHHSCCEECTTTCCEE
T ss_pred CCCCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccc--cccccCCccccCCCcc
Confidence 456689999888752 2344333 24667743 45888883 233444 799999876
No 125
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=27.92 E-value=20 Score=33.27 Aligned_cols=25 Identities=28% Similarity=0.757 Sum_probs=18.0
Q ss_pred ecCCCCCCcchhhhHhHHhcCCCCCCCcccc
Q 003073 38 ACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 68 (850)
Q Consensus 38 AC~eC~FpVCRpCYEyERkeG~q~CPqCkt~ 68 (850)
.|..|||-. -++-.....||.||..
T Consensus 69 ~C~~CG~~F------~~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 69 QCRKCGFVF------KAEINIPSRCPKCKSE 93 (105)
T ss_dssp BBTTTCCBC------CCCSSCCSSCSSSCCC
T ss_pred ChhhCcCee------cccCCCCCCCcCCCCC
Confidence 499999886 1334555899999864
No 126
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=27.56 E-value=29 Score=28.13 Aligned_cols=48 Identities=21% Similarity=0.469 Sum_probs=32.3
Q ss_pred CCccccccCCCcccCCCCCcee--ecCCCCCC-cchhhhHhHHhcCCCCCCCccccccc
Q 003073 16 GGQVCQICGDNVGKTVDGNPFV--ACDVCAFP-VCRPCYEYERKDGNQSCPQCKTRYKK 71 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~Fv--AC~eC~Fp-VCRpCYEyERkeG~q~CPqCkt~Ykr 71 (850)
....|.||-+.--- -.|+ +| +-- .|..|..--.+ .+..||-|+.+.+.
T Consensus 6 ~~~~C~IC~~~~~~----~~~~~~pC---gH~~~C~~C~~~~~~-~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRD----GNIIHGRT---GHLVTCFHCARRLKK-AGASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSC----EEEEETTE---EEEEECHHHHHHHHH-TTCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCC----eEEEecCC---CCHhHHHHHHHHHHH-hCCcCCCcCchhhc
Confidence 34589999885211 1244 55 554 79999975444 45899999998753
No 127
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=27.41 E-value=15 Score=34.24 Aligned_cols=54 Identities=20% Similarity=0.367 Sum_probs=0.8
Q ss_pred CCccccccCCCcccCC-----------CCCceeecCCCCCCcchhhhHhHHhcCCCCCCCcccccc
Q 003073 16 GGQVCQICGDNVGKTV-----------DGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~-----------~Ge~FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Yk 70 (850)
....|.||-+++.... .++.-+.-..|+---|+.|-. +--..+..||-|+.++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~-~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCIS-RWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHH-HHHHcCCcCCCCCCeee
Confidence 3468999999876421 223333334678888999974 32233789999999864
No 128
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=26.57 E-value=4.2 Score=34.76 Aligned_cols=37 Identities=27% Similarity=0.422 Sum_probs=27.2
Q ss_pred CcchhhhHhHHhcCCCCCCCccccccccCCCCcccCC
Q 003073 45 PVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGD 81 (850)
Q Consensus 45 pVCRpCYEyERkeG~q~CPqCkt~Ykr~kGs~rv~gd 81 (850)
|+|+-=.+|.+.+|.-.|+.|+..|--..|-|..--|
T Consensus 12 P~ck~~L~~~~~~~~LiC~~cg~~YPI~dGIPvmL~~ 48 (68)
T 2jr6_A 12 PVTKGRLEYHQDKQELWSRQAKLAYPIKDGIPYMLEN 48 (68)
T ss_dssp SSSCCBCEEETTTTEEEETTTTEEEEEETTEECCCTT
T ss_pred CCCCCcCeEeCCCCEEEcCCCCcEecCCCCeeeeChh
Confidence 3333333455567888999999999998888887766
No 129
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.81 E-value=59 Score=26.33 Aligned_cols=29 Identities=28% Similarity=0.641 Sum_probs=16.7
Q ss_pred cCCccccccCCCccc-----CCCCCce----eecCCCC
Q 003073 15 VGGQVCQICGDNVGK-----TVDGNPF----VACDVCA 43 (850)
Q Consensus 15 ~~~~~C~iCgd~Vg~-----~~~Ge~F----vAC~eC~ 43 (850)
+.+..|..|+..|.- .+.|..| ..|..|.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~ 40 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCR 40 (72)
T ss_dssp SCCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSC
T ss_pred CCCCCCccCCCccCCCceEEEECCCeEcccCCcccccC
Confidence 345678888877653 2455554 2355663
No 130
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*
Probab=25.67 E-value=81 Score=31.83 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=24.1
Q ss_pred CCEEEEecCCCCCCcHHHHHHHHhhhcC
Q 003073 551 GPFLLNLDCDHYINNSKALREAMCFMMD 578 (850)
Q Consensus 551 ge~I~ilDAD~~~~~pdfLr~tv~fF~D 578 (850)
.++|+|+|||+=.-.++.|++++-.+.+
T Consensus 100 ~d~Vlv~~~d~Pli~~~~i~~li~~~~~ 127 (231)
T 3q80_A 100 PEFVLVHDAARALTPPALVARVVEALRD 127 (231)
T ss_dssp CSEEEECCTTCTTCCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCcCCCCHHHHHHHHHHHhh
Confidence 5899999999866689999999988764
No 131
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=25.02 E-value=52 Score=29.66 Aligned_cols=24 Identities=33% Similarity=0.895 Sum_probs=17.0
Q ss_pred CCCcchhhhHhHHhcCCCCCCCccccc
Q 003073 43 AFPVCRPCYEYERKDGNQSCPQCKTRY 69 (850)
Q Consensus 43 ~FpVCRpCYEyERkeG~q~CPqCkt~Y 69 (850)
+-|.|+.||.- +- ...|..|+.+-
T Consensus 50 g~~yC~~cy~~--~~-~~~C~~C~~~I 73 (126)
T 2xqn_T 50 DKPVCKPCYVK--NH-AVVCQGCHNAI 73 (126)
T ss_dssp TEEEEHHHHHH--HS-CCBCTTTCSBC
T ss_pred CEEechHHhCc--Cc-CccCcccCCcC
Confidence 34679999942 23 36799999876
No 132
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=24.77 E-value=22 Score=28.95 Aligned_cols=50 Identities=24% Similarity=0.703 Sum_probs=36.2
Q ss_pred cCCccccccCCCcccCCCCCceeecCCCCCCcchhhhH--hH-HhcCCCCCCCccccccc
Q 003073 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYE--YE-RKDGNQSCPQCKTRYKK 71 (850)
Q Consensus 15 ~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYE--yE-RkeG~q~CPqCkt~Ykr 71 (850)
.+...|.+|++. | ..+.|..|.--.=..|.. .. .-+|.-.||.|.....+
T Consensus 3 ~~~~~C~vC~~~------g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~ 55 (60)
T 2puy_A 3 IHEDFCSVCRKS------G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLK 55 (60)
T ss_dssp CCCSSCTTTCCC------S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHH
T ss_pred CCCCCCcCCCCC------C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhc
Confidence 456789999973 3 578999997665667876 22 34688899999776543
No 133
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=23.75 E-value=52 Score=26.96 Aligned_cols=14 Identities=29% Similarity=0.838 Sum_probs=8.4
Q ss_pred hcCCCCCCCccccc
Q 003073 56 KDGNQSCPQCKTRY 69 (850)
Q Consensus 56 keG~q~CPqCkt~Y 69 (850)
+.|.-+|..|+.-|
T Consensus 27 ~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 27 RAGDMICPECGLVV 40 (58)
T ss_dssp SSCCEECTTTCCEE
T ss_pred CCCeEEeCCCCCEE
Confidence 44555666666666
No 134
>2ksl_A U1-agatoxin-TA1A; insecticidal toxin, spider toxin, neurotoxin, crustacean hyperglycemic hormone, MOLT-inhibiting hormone; NMR {Tegenaria agrestis}
Probab=23.35 E-value=2.5 Score=33.33 Aligned_cols=25 Identities=32% Similarity=0.731 Sum_probs=18.0
Q ss_pred CccccccCCCcccCC----CCCceeecCC
Q 003073 17 GQVCQICGDNVGKTV----DGNPFVACDV 41 (850)
Q Consensus 17 ~~~C~iCgd~Vg~~~----~Ge~FvAC~e 41 (850)
+.+|.-|||+|..-+ +.+++.||||
T Consensus 20 snvcngcgdqvaaceaecfrndvytache 48 (51)
T 2ksl_A 20 SNVCNGCGDQVAACEAECFRNDVYTACHE 48 (51)
T ss_dssp HHHHHHHCSCHHHHHHTTSCSHHHHHHHH
T ss_pred ccccccchhHHHHHHHHHHhhhHHHHHHh
Confidence 458999999986532 5666777765
No 135
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.24 E-value=38 Score=28.20 Aligned_cols=30 Identities=17% Similarity=0.412 Sum_probs=19.2
Q ss_pred cCCccccccCCCcc-----cCCCCCce----eecCCCCC
Q 003073 15 VGGQVCQICGDNVG-----KTVDGNPF----VACDVCAF 44 (850)
Q Consensus 15 ~~~~~C~iCgd~Vg-----~~~~Ge~F----vAC~eC~F 44 (850)
..+.+|..|+..|. +.+.|..| ..|..|.=
T Consensus 13 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~ 51 (82)
T 1x63_A 13 EDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQ 51 (82)
T ss_dssp CCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCC
T ss_pred ccCCcCccCCcccccCceEEEECccccccccCchhhCCC
Confidence 34579999999886 33456655 23556643
No 136
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=23.21 E-value=16 Score=33.65 Aligned_cols=31 Identities=13% Similarity=0.412 Sum_probs=21.3
Q ss_pred ceeecCCCCCCcchhhhHhHHhcCCC-CCCCcccccccc
Q 003073 35 PFVACDVCAFPVCRPCYEYERKDGNQ-SCPQCKTRYKKH 72 (850)
Q Consensus 35 ~FvAC~eC~FpVCRpCYEyERkeG~q-~CPqCkt~Ykr~ 72 (850)
...-|.+|++ +++..+-.. .||.|+.+-.+.
T Consensus 72 ~~~~C~~CG~-------~~e~~~~~~~~CP~Cgs~~~~i 103 (119)
T 2kdx_A 72 VELECKDCSH-------VFKPNALDYGVCEKCHSKNVII 103 (119)
T ss_dssp CEEECSSSSC-------EECSCCSTTCCCSSSSSCCCEE
T ss_pred ceEEcCCCCC-------EEeCCCCCCCcCccccCCCcEE
Confidence 3566878874 344455567 899999986554
No 137
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=23.08 E-value=22 Score=42.13 Aligned_cols=58 Identities=28% Similarity=0.769 Sum_probs=42.7
Q ss_pred cccCCccccccCCCcccCCC---CCceeecCCCC--------------------CCcchhhh-HhH----Hh--cCCCCC
Q 003073 13 KNVGGQVCQICGDNVGKTVD---GNPFVACDVCA--------------------FPVCRPCY-EYE----RK--DGNQSC 62 (850)
Q Consensus 13 ~~~~~~~C~iCgd~Vg~~~~---Ge~FvAC~eC~--------------------FpVCRpCY-EyE----Rk--eG~q~C 62 (850)
-.....+|.-|=.++---.| +=+|+-|..|| ||.|..|. ||+ || ----+|
T Consensus 13 i~pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aC 92 (657)
T 3ttc_A 13 IVPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVAC 92 (657)
T ss_dssp CCCCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCC
T ss_pred cCCchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcC
Confidence 34566799999888753222 55899999994 99999996 566 44 122599
Q ss_pred CCcccccc
Q 003073 63 PQCKTRYK 70 (850)
Q Consensus 63 PqCkt~Yk 70 (850)
|.|+=++.
T Consensus 93 p~CGP~l~ 100 (657)
T 3ttc_A 93 PECGPYLE 100 (657)
T ss_dssp TTTSCCEE
T ss_pred cccCccce
Confidence 99998883
No 138
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=22.83 E-value=29 Score=30.81 Aligned_cols=27 Identities=33% Similarity=0.865 Sum_probs=15.9
Q ss_pred cccccCCCcccCC----CCCceeecCCCCCCc
Q 003073 19 VCQICGDNVGKTV----DGNPFVACDVCAFPV 46 (850)
Q Consensus 19 ~C~iCgd~Vg~~~----~Ge~FvAC~eC~FpV 46 (850)
.|. |||..-+++ +|+..|.|..|..-|
T Consensus 32 ~Cr-CGd~F~it~edL~~ge~iv~C~sCSL~I 62 (83)
T 1wge_A 32 PCP-CGDNFAITKEDLENGEDVATCPSCSLII 62 (83)
T ss_dssp CCS-SSSCEEEEHHHHHTTCCEEECTTTCCEE
T ss_pred eCC-CCCEEEECHHHHhCCCEEEECCCCceEE
Confidence 465 676655542 566666666665544
No 139
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=22.60 E-value=41 Score=28.29 Aligned_cols=51 Identities=24% Similarity=0.433 Sum_probs=32.2
Q ss_pred CCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHH---hcCCCCCCCcccccc
Q 003073 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYER---KDGNQSCPQCKTRYK 70 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyER---keG~q~CPqCkt~Yk 70 (850)
....| +||.. ..+|+..|+|..|.-=.=-.|..+.. ....-.||.|+.+-+
T Consensus 15 ~~~~C-~C~~~---~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~ 68 (72)
T 1wee_A 15 WKVDC-KCGTK---DDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSG 68 (72)
T ss_dssp SEECC-TTCCC---SCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCS
T ss_pred cceEe-eCCCc---cCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCC
Confidence 34578 79874 34688999998874222234544432 346688999986543
No 140
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=22.43 E-value=1.1e+02 Score=26.00 Aligned_cols=60 Identities=22% Similarity=0.511 Sum_probs=38.2
Q ss_pred CccccccCCccccccCCCcccCCCCCceeecCC--CCC-CcchhhhHhHHh-cCCCCCCCccccccccCC
Q 003073 9 VKSIKNVGGQVCQICGDNVGKTVDGNPFVACDV--CAF-PVCRPCYEYERK-DGNQSCPQCKTRYKKHKG 74 (850)
Q Consensus 9 ~k~~~~~~~~~C~iCgd~Vg~~~~Ge~FvAC~e--C~F-pVCRpCYEyERk-eG~q~CPqCkt~Ykr~kG 74 (850)
..+........| +|+.. .+| ..|+|.. |.. -.=-.|...... +|.-.||.|...-++.+|
T Consensus 8 ~~~~d~~~~~~C-~C~~~----~~g-~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~~k~~~ 71 (71)
T 1wen_A 8 DMPVDPNEPTYC-LCHQV----SYG-EMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQESGPSSG 71 (71)
T ss_dssp CCCCCTTSCCCS-TTCCC----SCS-SEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCSSSCCC
T ss_pred ccccCCCCCCEE-ECCCC----CCC-CEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCccccccCC
Confidence 344445566788 89874 236 4899998 542 222355554433 588999999877666544
No 141
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.04 E-value=72 Score=25.85 Aligned_cols=14 Identities=21% Similarity=0.591 Sum_probs=10.1
Q ss_pred CCccccccCCCccc
Q 003073 16 GGQVCQICGDNVGK 29 (850)
Q Consensus 16 ~~~~C~iCgd~Vg~ 29 (850)
....|..|+..|.-
T Consensus 4 ~~~~C~~C~~~I~~ 17 (72)
T 1x4l_A 4 GSSGCAGCTNPISG 17 (72)
T ss_dssp CSCSBTTTTBCCCC
T ss_pred CCCCCcCCCccccC
Confidence 45678888888763
No 142
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.04 E-value=29 Score=28.14 Aligned_cols=15 Identities=27% Similarity=1.052 Sum_probs=12.9
Q ss_pred CCCCCCCcccccccc
Q 003073 58 GNQSCPQCKTRYKKH 72 (850)
Q Consensus 58 G~q~CPqCkt~Ykr~ 72 (850)
|...||+|+..|+..
T Consensus 11 ~~~~CPrCn~~f~~~ 25 (49)
T 2e72_A 11 GRKICPRCNAQFRVT 25 (49)
T ss_dssp SCCCCTTTCCCCSSH
T ss_pred CceeCCcccccccch
Confidence 678999999999754
No 143
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=21.81 E-value=55 Score=29.44 Aligned_cols=50 Identities=24% Similarity=0.537 Sum_probs=36.0
Q ss_pred ccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHH---hcCCCCCCCccc
Q 003073 14 NVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYER---KDGNQSCPQCKT 67 (850)
Q Consensus 14 ~~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyER---keG~q~CPqCkt 67 (850)
..+..+|.+|++.- +.+.++.|..|.-..=..|..... +++.-.||.|++
T Consensus 4 ~~~~~~C~~C~~~g----~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~~ 56 (111)
T 2ysm_A 4 GSSGANCAVCDSPG----DLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKV 56 (111)
T ss_dssp CCCCSCBTTTCCCC----CTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTCC
T ss_pred CCCCCCCcCCCCCC----CCcCCeECCCCCCCcChHHhCCccccccccCccCCcCCc
Confidence 34667999999861 223479999998776677776553 367888999874
No 144
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=21.46 E-value=22 Score=31.99 Aligned_cols=27 Identities=33% Similarity=0.864 Sum_probs=16.2
Q ss_pred cccccCCCcccCC----CCCceeecCCCCCCc
Q 003073 19 VCQICGDNVGKTV----DGNPFVACDVCAFPV 46 (850)
Q Consensus 19 ~C~iCgd~Vg~~~----~Ge~FvAC~eC~FpV 46 (850)
.|. |||..-+++ +|+..|.|..|..-|
T Consensus 25 pCr-CGd~F~IteedLe~ge~iv~C~sCSL~I 55 (89)
T 2jr7_A 25 PCP-CGDNFSITKEDLENGEDVATCPSCSLII 55 (89)
T ss_dssp ECT-TSSEEEEEHHHHHHTCCEEECTTTCCEE
T ss_pred cCC-CCCEEEECHHHHhCCCEEEECCCCccEE
Confidence 465 777655542 566666666666555
No 145
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=20.94 E-value=43 Score=28.48 Aligned_cols=43 Identities=28% Similarity=0.797 Sum_probs=30.1
Q ss_pred CccccccCCCcccCCCCCceeecCCCCCC-cchhhhHhHHhcCCCCCCCccccccc
Q 003073 17 GQVCQICGDNVGKTVDGNPFVACDVCAFP-VCRPCYEYERKDGNQSCPQCKTRYKK 71 (850)
Q Consensus 17 ~~~C~iCgd~Vg~~~~Ge~FvAC~eC~Fp-VCRpCYEyERkeG~q~CPqCkt~Ykr 71 (850)
...|.||-+..- --+|++| +-- .|..|..- -+.||-|+++...
T Consensus 18 ~~~C~IC~~~~~----~~v~~pC---gH~~~C~~C~~~-----~~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEI----NSTFCPC---GHTVCCESCAAQ-----LQSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBC----CEEEETT---CBCCBCHHHHTT-----CSBCTTTCCBCCE
T ss_pred CCEeEEeCcccC----cEEEECC---CCHHHHHHHHHh-----cCcCCCCCchhhC
Confidence 347999987632 1246655 555 79999852 3599999998864
No 146
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=20.82 E-value=68 Score=27.07 Aligned_cols=52 Identities=19% Similarity=0.480 Sum_probs=34.6
Q ss_pred ccCCccccccCCCcccCCCCCceeecCCCCCCcchhhhHhHH--------hcCCCCCCCcccccc
Q 003073 14 NVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYER--------KDGNQSCPQCKTRYK 70 (850)
Q Consensus 14 ~~~~~~C~iCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYEyER--------keG~q~CPqCkt~Yk 70 (850)
..+...| +|+.. .+|+..|+|..|.-=.=-.|..... ....-.||.|.....
T Consensus 13 d~~~~~C-~C~~~----~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 13 DPNALYC-ICRQP----HNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp CTTCCCS-TTCCC----CCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CCCCCEE-ECCCc----cCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 3456678 89865 2477899998885443345554332 346789999987654
No 147
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=20.66 E-value=9.2 Score=39.44 Aligned_cols=37 Identities=27% Similarity=0.591 Sum_probs=24.3
Q ss_pred ccccccCCCcccC---CCC-------Cc-eeecCCCCCCcchhhhHhH
Q 003073 18 QVCQICGDNVGKT---VDG-------NP-FVACDVCAFPVCRPCYEYE 54 (850)
Q Consensus 18 ~~C~iCgd~Vg~~---~~G-------e~-FvAC~eC~FpVCRpCYEyE 54 (850)
.+|..||.+--.+ .+| +. .|-=+|=-.|+||-||.-.
T Consensus 163 aiC~~CG~~A~~~~R~~~g~~~~~~g~~i~IGg~e~Y~~~CR~cy~~~ 210 (219)
T 3e2i_A 163 AVCAVCGSSSSRTQRLINGKPAKIDDPIILVGANESYEPRCRAHHIVA 210 (219)
T ss_dssp EECTTTCSEECEEEEEETTEECBTTCCSCCSSCCEEEEEECGGGCCCB
T ss_pred eEccCCCCcceEEEEEECCcccccCCCEEEECCCccEEEcCHHhhcCc
Confidence 4899999883322 243 32 3444577789999999533
No 148
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.33 E-value=40 Score=27.69 Aligned_cols=32 Identities=16% Similarity=0.523 Sum_probs=20.2
Q ss_pred ccCCccccccCCCccc-----CCCCCcee----ecCCCCCC
Q 003073 14 NVGGQVCQICGDNVGK-----TVDGNPFV----ACDVCAFP 45 (850)
Q Consensus 14 ~~~~~~C~iCgd~Vg~-----~~~Ge~Fv----AC~eC~Fp 45 (850)
...+..|..|+..|.. .+.|..|- .|..|.-+
T Consensus 8 ~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~ 48 (77)
T 1g47_A 8 ALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQ 48 (77)
T ss_dssp CCCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCC
T ss_pred CCCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCC
Confidence 3567799999999852 34555432 36666443
No 149
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=20.31 E-value=19 Score=35.82 Aligned_cols=27 Identities=22% Similarity=0.548 Sum_probs=16.8
Q ss_pred eeecCCCCCCcchhhhHhHHhcCCCCCCCccccc
Q 003073 36 FVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 69 (850)
Q Consensus 36 FvAC~eC~FpVCRpCYEyERkeG~q~CPqCkt~Y 69 (850)
.--|..|||- |+-.+--..||.|+.+=
T Consensus 155 ~~~C~~CG~~-------~~g~~~p~~CP~C~~~k 181 (191)
T 1lko_A 155 KWRCRNCGYV-------HEGTGAPELCPACAHPK 181 (191)
T ss_dssp EEEETTTCCE-------EEEEECCSBCTTTCCBG
T ss_pred eEEECCCCCE-------eeCCCCCCCCCCCcCCH
Confidence 3447777764 33323334999999873
No 150
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=20.29 E-value=25 Score=31.18 Aligned_cols=27 Identities=26% Similarity=0.775 Sum_probs=16.6
Q ss_pred cccccCCCcccC----CCCCceeecCCCCCCc
Q 003073 19 VCQICGDNVGKT----VDGNPFVACDVCAFPV 46 (850)
Q Consensus 19 ~C~iCgd~Vg~~----~~Ge~FvAC~eC~FpV 46 (850)
.|. |||..-++ ++|+..|.|..|..-|
T Consensus 25 pCr-CGd~F~it~edL~~ge~iv~C~sCSL~I 55 (83)
T 1yop_A 25 PCP-CGDRFQIYLDDMFEGEKVAVCPSCSLMI 55 (83)
T ss_dssp EET-TTEEEEEEHHHHHTTCCEEECSSSCCEE
T ss_pred eCC-CCCeEEECHHHHhCCCEEEECCCCccEE
Confidence 466 77665554 2577667776666544
No 151
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=20.15 E-value=74 Score=29.01 Aligned_cols=49 Identities=22% Similarity=0.515 Sum_probs=35.6
Q ss_pred ccccccCCCc---ccCCCCCceeecCCCCCCcchhhhHh------HHhcCCCCCCCcc
Q 003073 18 QVCQICGDNV---GKTVDGNPFVACDVCAFPVCRPCYEY------ERKDGNQSCPQCK 66 (850)
Q Consensus 18 ~~C~iCgd~V---g~~~~Ge~FvAC~eC~FpVCRpCYEy------ERkeG~q~CPqCk 66 (850)
.+|.+|.+.- ..+.+++.++.|..|.-..=..|.+. ..+++.=.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 4799996653 23346778999999986655667655 3568888899986
Done!