RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 003074
(850 letters)
>gnl|CDD|99996 cd04300, GT1_Glycogen_Phosphorylase, This is a family of
oligosaccharide phosphorylases. It includes yeast and
mammalian glycogen phosphorylases, plant starch/glucan
phosphorylase, as well as the maltodextrin
phosphorylases of bacteria. The members of this family
catalyze the breakdown of oligosaccharides into
glucose-1-phosphate units. They are important allosteric
enzymes in carbohydrate metabolism. The allosteric
control mechanisms of yeast and mammalian members of
this family are different from that of bacterial
members. The members of this family belong to the GT-B
structural superfamily of glycoslytransferases, which
have characteristic N- and C-terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two
domains includes the catalytic center and permits a high
degree of flexibility.
Length = 797
Score = 654 bits (1691), Expect = 0.0
Identities = 210/409 (51%), Positives = 273/409 (66%), Gaps = 23/409 (5%)
Query: 445 EPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVTPRRWIR 504
+ VRMA+L +VGSH+VNGVA +HSE++ VF +FY+L+PEKF NKTNG+TPRRW+
Sbjct: 403 GGEKQVRMAHLAIVGSHSVNGVAALHSELLKETVFKDFYELYPEKFNNKTNGITPRRWLL 462
Query: 505 FCNPDLSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEK 564
NP LS+++T +G +DWVT+ +L +L FAD+ +FRA K+ NK ++ ++IK+
Sbjct: 463 QANPGLSALITETIG-DDWVTDLDQLKKLEPFADDPAFLKEFRAIKQANKERLAAYIKKT 521
Query: 565 TGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGK 624
TG V PD++FD+QVKRIHEYKRQL+N+L I++ Y ++KE A VPR IFGGK
Sbjct: 522 TGVEVDPDSLFDVQVKRIHEYKRQLLNVLHIIHLYNRIKENP----NADIVPRTFIFGGK 577
Query: 625 AFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHIST 684
A Y AK I+K I V VN+DP++GD LKV+F+P+YNVS+AE +IPA++LS+ IST
Sbjct: 578 AAPGYYMAKLIIKLINAVADVVNNDPDVGDKLKVVFLPNYNVSLAEKIIPAADLSEQIST 637
Query: 685 AGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEG 744
AG EASGT NMKF +NG + IGTLDGANVEI +EVGEEN F+FG A E+ LR
Sbjct: 638 AGKEASGTGNMKFMLNGALTIGTLDGANVEIAEEVGEENIFIFGLTAEEVEALRANGYYP 697
Query: 745 KFV--PDARFEEVKKFVKSGVFGSYN-------YDELMGSLEGNEGFGQADYFLVGKDFP 795
D V + SG F + D L L GN D +LV DF
Sbjct: 698 ADYYEADPELRRVLDQIASGFFSPGDPGEFRPLVDSL---LNGN------DEYLVLADFE 748
Query: 796 SYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNI 844
SY++ QEKVD Y DQ+ W R SI+N A S KFSSDRTI+EYA DIWN+
Sbjct: 749 SYVDAQEKVDALYRDQEEWARKSILNIARSGKFSSDRTIREYAEDIWNV 797
Score = 546 bits (1410), Expect = 0.0
Identities = 189/323 (58%), Positives = 231/323 (71%), Gaps = 9/323 (2%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDS 60
+EFL GR L N + NLGL EAL++LG LE++ QEPDA LGNGGLGRLA+CFLDS
Sbjct: 60 LEFLMGRLLGNNLLNLGLYDEVREALAELGVDLEDLEEQEPDAGLGNGGLGRLAACFLDS 119
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDG-QEEVAEDWLELGNPWEIERNDVSYPVKFYGK 119
+ATL P +GYG+RY+YGLFKQ+I DG Q E+ ++WL GNPWEI R DV+ PV+F G+
Sbjct: 120 LATLGLPGYGYGIRYEYGLFKQKI-VDGYQVELPDNWLRYGNPWEIRRPDVAVPVRFGGR 178
Query: 120 IVPGSDG---KSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAG 176
+ DG + W+ GE + AV YD PIPGY T T LRLWS SE+FDL AFN G
Sbjct: 179 VEHYEDGGRLRVRWVDGETVLAVPYDTPIPGYGTNTVNTLRLWSA-EASEEFDLDAFNRG 237
Query: 177 DHTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVN 236
D+ +A E AE I +LYP D + EGK LRLKQQY SASLQDII RF+K G
Sbjct: 238 DYIRAVEEKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQDIIRRFKKTHG---P 294
Query: 237 WEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALE 296
EFP+KVA+Q+NDTHP L IPEL+RIL+D +GL W EAW+IT +T AYTNHT+LPEALE
Sbjct: 295 LSEFPDKVAIQLNDTHPALAIPELMRILVDEEGLDWDEAWDITTKTFAYTNHTLLPEALE 354
Query: 297 KWSFELMQKLLPRHMEIIEMIDE 319
KW +L ++LLPRH+EII I+
Sbjct: 355 KWPVDLFERLLPRHLEIIYEINR 377
>gnl|CDD|215868 pfam00343, Phosphorylase, Carbohydrate phosphorylase. The members
of this family catalyze the formation of glucose
1-phosphate from one of the following polyglucoses;
glycogen, starch, glucan or maltodextrin.
Length = 712
Score = 600 bits (1549), Expect = 0.0
Identities = 211/402 (52%), Positives = 287/402 (71%), Gaps = 16/402 (3%)
Query: 450 VRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVTPRRWIRFCNPD 509
VRMA+L +VGSHAVNGVA +HS++V ++F +F++LWP KFQNKTNG+TPRRW+ NP
Sbjct: 322 VRMAHLAIVGSHAVNGVAALHSDLVKKDLFPDFHELWPNKFQNKTNGITPRRWLLQANPG 381
Query: 510 LSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSV 569
L++I+T LG ++WVT+ +L +L FAD+ ++ K+ NK ++ +I+++TG V
Sbjct: 382 LAAIITKSLG-DEWVTDLEQLIKLEPFADDPAFIEEWAEIKQANKQRLAEYIEKETGVVV 440
Query: 570 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATY 629
+P+A+FD+QVKRIHEYKRQL+N+L ++YRY ++KE VPRV IFGGKA Y
Sbjct: 441 NPNALFDVQVKRIHEYKRQLLNVLHVIYRYNRIKEDP----PKDVVPRVVIFGGKAAPGY 496
Query: 630 VQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEA 689
AKRI+K I V VN+DP +GD LKV+F+P+Y VS+AE +IPAS++S+ ISTAG EA
Sbjct: 497 YMAKRIIKLINSVADVVNNDPAVGDKLKVVFLPNYRVSLAEKIIPASDISEQISTAGTEA 556
Query: 690 SGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKE--RSEGKFV 747
SGTSNMKFA+NG + IGTLDGANVEI +EVGEEN F+FG A E+ LRK+ RS +
Sbjct: 557 SGTSNMKFALNGALTIGTLDGANVEIAEEVGEENIFIFGLTAEEVEALRKKGYRSREYYK 616
Query: 748 PDARFEEVKKFVKSGVFG---SYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKV 804
D R +V + SG F + +++ SL+G DY+LV DFPSY++ Q++V
Sbjct: 617 KDPRLRQVLDQIISGFFSPEDPDRFRDILDSLQGG------DYYLVFADFPSYVDAQKRV 670
Query: 805 DEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 846
DE Y D++ WT+ SI+N A S KFSSDRTI+EYA+ IW I P
Sbjct: 671 DELYKDREAWTKKSILNIANSGKFSSDRTIKEYAKRIWGIEP 712
Score = 467 bits (1203), Expect = e-154
Identities = 184/324 (56%), Positives = 232/324 (71%), Gaps = 9/324 (2%)
Query: 25 ALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQRI 84
AL +LG +LE ++ +E DA LGNGGLGRLA+CFLDS+ATL PA+GYG+RY+YG+F+Q+I
Sbjct: 1 ALKELGLNLEELLEEENDAGLGNGGLGRLAACFLDSLATLGLPAYGYGIRYEYGMFEQKI 60
Query: 85 TKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKIVPGSDGKSHWIGGEDIKAVAYDIP 144
Q E+ +DWLE GNPWEIER DV YPV+FYGK+ K+ W E + AVAYD P
Sbjct: 61 VDGWQVELPDDWLEYGNPWEIERPDVRYPVRFYGKVEEKEGRKTKWDDTEVVLAVAYDTP 120
Query: 145 IPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTKAAEALTNAEKICYILYPGDESVEG 204
IPGY+T T LRLWS SE+F+L+ FN GD+ A E AE I +LYP D + EG
Sbjct: 121 IPGYRTNNTNTLRLWSAK-ASEEFNLADFNDGDYLAAVEDKNRAENISRVLYPNDNTFEG 179
Query: 205 KVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEFPEKVAVQMNDTHPTLCIPELIRIL 264
K LRLKQQY L SA+LQDII RF K+S + EFP+KVA+Q+NDTHPTL IPEL+RIL
Sbjct: 180 KELRLKQQYFLVSATLQDIIRRF-KKSHK--SLSEFPDKVAIQLNDTHPTLAIPELMRIL 236
Query: 265 IDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHT 324
ID +GLSW EAW IT +T AYTNHTVLPEALEKW L++KLLPRH++II I+E +
Sbjct: 237 IDEEGLSWDEAWEITTKTFAYTNHTVLPEALEKWPVHLVEKLLPRHLQIIYEINERFLKL 296
Query: 325 IVSEYGTADPDLLEKRLKETRILE 348
+ ++ P E +L+ I++
Sbjct: 297 VWEKW----PG-DEDKLRRMSIID 315
>gnl|CDD|233722 TIGR02093, P_ylase, glycogen/starch/alpha-glucan phosphorylases.
This family consists of phosphorylases. Members use
phosphate to break alpha 1,4 linkages between pairs of
glucose residues at the end of long glucose polymers,
releasing alpha-D-glucose 1-phosphate. The nomenclature
convention is to preface the name according to the
natural substrate, as in glycogen phosphorylase, starch
phosphorylase, maltodextrin phosphorylase, etc. Name
differences among these substrates reflect differences
in patterns of branching with alpha 1,6 linkages.
Members include allosterically regulated and unregulated
forms. A related family, TIGR02094, contains examples
known to act well on particularly small alpha 1,4
glucans, as may be found after import from exogenous
sources [Energy metabolism, Biosynthesis and degradation
of polysaccharides].
Length = 794
Score = 592 bits (1528), Expect = 0.0
Identities = 200/400 (50%), Positives = 274/400 (68%), Gaps = 15/400 (3%)
Query: 450 VRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVTPRRWIRFCNPD 509
VRMANL +VGSH+VNGVA +H+E++ ++ +FY+L+PEKF NKTNG+TPRRW+R NP
Sbjct: 405 VRMANLAIVGSHSVNGVAALHTELLKEDLLKDFYELYPEKFNNKTNGITPRRWLRLANPG 464
Query: 510 LSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSV 569
LS++LT +G +DW+T+ L +L +AD+ + +FR K+ NK ++ ++IKE TG V
Sbjct: 465 LSALLTETIG-DDWLTDLDLLKKLEPYADDSEFLEEFRQVKQANKQRLAAYIKEHTGVEV 523
Query: 570 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATY 629
P+++FD+QVKR+HEYKRQL+N+L ++Y Y ++KE VPR IFGGKA Y
Sbjct: 524 DPNSIFDVQVKRLHEYKRQLLNVLHVIYLYNRIKEDPP----KDIVPRTVIFGGKAAPGY 579
Query: 630 VQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEA 689
AK I+K I V VN+DP +GD LKV+FVP+YNVS+AEL+IPA++LS+ ISTAG EA
Sbjct: 580 HMAKLIIKLINSVAEVVNNDPAVGDKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEA 639
Query: 690 SGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKE--RSEGKFV 747
SGT NMKF +NG + IGTLDGANVEIR+EVG EN F+FG E+ LR++ +
Sbjct: 640 SGTGNMKFMLNGALTIGTLDGANVEIREEVGAENIFIFGLTVEEVEALREKGYNPREYYE 699
Query: 748 PDARFEEVKKFVKSGVFGSYN---YDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKV 804
D + V + SG F + + L SL + D F V DF +Y++ QE+V
Sbjct: 700 ADPELKRVLDLISSGTFSPGDPGLFRPLYDSLLNHG-----DPFFVLADFAAYVDAQERV 754
Query: 805 DEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNI 844
D Y DQ WT+ SI+N A S KFSSDRTI+EYA++IW++
Sbjct: 755 DALYRDQLEWTKKSILNIANSGKFSSDRTIREYAKEIWHV 794
Score = 500 bits (1289), Expect = e-165
Identities = 184/352 (52%), Positives = 233/352 (66%), Gaps = 12/352 (3%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDS 60
EFL GR L N + NLGL EAL +LG LE ++ E DA LGNGGLGRLA+CFLDS
Sbjct: 57 AEFLMGRLLGNNLLNLGLYDEVKEALRELGLDLEEILEIENDAGLGNGGLGRLAACFLDS 116
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
+ATL PA GYG+RY+YGLFKQ+I Q E+ +DWL GNPWEI R D SY V+F G++
Sbjct: 117 LATLGLPATGYGIRYEYGLFKQKIVDGWQVELPDDWLRYGNPWEIRRPDRSYEVRFGGRV 176
Query: 121 VPGSDGKSH---WIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGD 177
D W+ E + A+ YD+P+PGY+T T LRLWS E+FDL AFNAGD
Sbjct: 177 ELQPDSDRLRPRWVPAETVLAIPYDVPVPGYRTDTVNTLRLWSAE-APEEFDLDAFNAGD 235
Query: 178 HTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNW 237
+ +A E AE I +LYP D + EGK LRLKQQY SASLQDII R + +
Sbjct: 236 YYEAVEEKNRAENISRVLYPNDSTYEGKELRLKQQYFFVSASLQDIIRRHLETHP---DL 292
Query: 238 EEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEK 297
+FP+KVA+Q+NDTHP L IPEL+R+LID +G+ W EAW+IT +T AYTNHT+LPEALEK
Sbjct: 293 SDFPKKVAIQLNDTHPALAIPELMRLLIDEEGMDWDEAWDITTKTFAYTNHTLLPEALEK 352
Query: 298 WSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEKRLKETRILEN 349
W +L QKLLPRH+EII I+ + + ++ P E +++ I+E
Sbjct: 353 WPVDLFQKLLPRHLEIIYEINRRFLAELAAKG----PG-DEAKIRRMSIIEE 399
>gnl|CDD|237881 PRK14985, PRK14985, maltodextrin phosphorylase; Provisional.
Length = 798
Score = 443 bits (1142), Expect = e-143
Identities = 186/402 (46%), Positives = 266/402 (66%), Gaps = 23/402 (5%)
Query: 450 VRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVTPRRWIRFCNPD 509
VRMANLCVV AVNGVA +HS++V ++F E+++LWP KF N TNG+TPRRWI+ CNP
Sbjct: 407 VRMANLCVVSGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPA 466
Query: 510 LSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSV 569
L+++L L E W + +L L K+AD+ + Q+R K+ NK+++ F+K++TG +
Sbjct: 467 LAALLDKTLKKE-WANDLDQLINLEKYADDAAFRQQYREIKQANKVRLAEFVKQRTGIEI 525
Query: 570 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATY 629
+P A+FD+Q+KR+HEYKRQ +N+L I+ YK+++E +R VPRV +FG KA Y
Sbjct: 526 NPQAIFDVQIKRLHEYKRQHLNLLHILALYKEIRENPQADR----VPRVFLFGAKAAPGY 581
Query: 630 VQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEA 689
AK I+ I V +N+DP +GD LKV+F+PDY VS AELLIPA+++S+ ISTAG EA
Sbjct: 582 YLAKNIIFAINKVAEVINNDPLVGDKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEA 641
Query: 690 SGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVP- 748
SGT NMK A+NG + +GTLDGANVEI ++VGEEN F+FG ++ L + P
Sbjct: 642 SGTGNMKLALNGALTVGTLDGANVEIAEQVGEENIFIFGHTVEQVKALLA----KGYDPV 697
Query: 749 -----DARFEEVKKFVKSGVFGSYN---YDELMGSLEGNEGFGQADYFLVGKDFPSYLEC 800
D + V K ++SG + + +D+++ SL+ D +LV DF +Y+E
Sbjct: 698 KWRKKDKVLDAVLKELESGKYSDGDKHAFDQMLHSLKQG-----GDPYLVLADFAAYVEA 752
Query: 801 QEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIW 842
Q++VD Y DQ+ WTR +I+NTA FSSDR+I++Y IW
Sbjct: 753 QKQVDALYRDQEAWTRAAILNTARCGMFSSDRSIRDYQARIW 794
Score = 338 bits (868), Expect = e-103
Identities = 142/321 (44%), Positives = 187/321 (58%), Gaps = 5/321 (1%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDS 60
MEFL GR N + NLG + L +L +++ +E D ALGNGGLGRLA+CFLDS
Sbjct: 66 MEFLIGRLTGNNLLNLGWYDDVQDVLKAYDINLTDLLEEETDPALGNGGLGRLAACFLDS 125
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
MAT+ PA GYGL Y+YGLF+Q Q E +DW PW + V GK+
Sbjct: 126 MATVGQPATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRDSYPWFRHNEALDVQVGIGGKV 185
Query: 121 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 180
DG+ W I A+D+P+ GY+ LRLW FDL+ FN GD +
Sbjct: 186 TK-QDGRERWEPAFTITGEAWDLPVVGYRNGVAQPLRLWQATHAHP-FDLTKFNDGDFLR 243
Query: 181 AAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEF 240
A + +AEK+ +LYP D GK LRL QQY C+ S+ DI+ R A E
Sbjct: 244 AEQQGIDAEKLTKVLYPNDNHTAGKKLRLMQQYFQCACSVADILRRHHL---AGRKLHEL 300
Query: 241 PEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSF 300
P+ +Q+NDTHPT+ IPEL+R+L+D LSW +AW IT +T AYTNHT++PEALE W
Sbjct: 301 PDYEVIQLNDTHPTIAIPELLRVLLDEHQLSWDDAWAITSKTFAYTNHTLMPEALECWDE 360
Query: 301 ELMQKLLPRHMEIIEMIDEEL 321
+L++ LLPRHM+II+ I+
Sbjct: 361 KLVKSLLPRHMQIIKEINTRF 381
>gnl|CDD|223136 COG0058, GlgP, Glucan phosphorylase [Carbohydrate transport and
metabolism].
Length = 750
Score = 436 bits (1123), Expect = e-141
Identities = 175/403 (43%), Positives = 243/403 (60%), Gaps = 19/403 (4%)
Query: 446 PPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVTPRRWIRF 505
P + V MA L +VGSH+VNGV+++HSE+ F +F+ L+PEK N TNG+TPRRW+
Sbjct: 361 PIEEVNMAVLALVGSHSVNGVSKLHSELSKKMWFADFHGLYPEKINNVTNGITPRRWLAP 420
Query: 506 CNPDLSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKT 565
NP L+ +L +G E W+ + L EL FAD++ + KR NK ++ I ++T
Sbjct: 421 ANPGLADLLDEKIGDE-WLNDLDILDELLWFADDKAFRELIAEIKRENKKRLAEEIADRT 479
Query: 566 GYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRV-CIFGGK 624
G V P+A+FD Q +RIHEYKRQL+N+L I Y+ +KE +VPRV IF GK
Sbjct: 480 GIEVDPNALFDGQARRIHEYKRQLLNLLDIERLYRILKE--------DWVPRVQIIFAGK 531
Query: 625 AFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHIST 684
A AK I+K I DV +N+ LKV+F+P+Y+VS+AELLIPA+++ + I T
Sbjct: 532 AHPADYAAKEIIKLINDVADVINN------KLKVVFLPNYDVSLAELLIPAADVWEQIPT 585
Query: 685 AGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEG 744
AG EASGTSNMK A+NG + +GTLDGANVEI + VG EN ++FG E+ LR + +
Sbjct: 586 AGKEASGTSNMKAALNGALTLGTLDGANVEIYEHVGGENGWIFGETVEEVDALRADGYDP 645
Query: 745 KFVPDARFEEVK---KFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQ 801
+ EVK + G F ++ D +V DF +Y+ Q
Sbjct: 646 NALYYELENEVKPVLDEIIDGRFSPGWKSRFKNLIDSLLPKFGTDRMMVLYDFKAYVPAQ 705
Query: 802 EKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNI 844
E+VD Y DQ+ WT+ +I+N A S FSSDRTI+EYA +IW+I
Sbjct: 706 EEVDALYRDQEAWTKKAILNIANSGLFSSDRTIREYAGEIWHI 748
Score = 327 bits (840), Expect = e-100
Identities = 142/320 (44%), Positives = 175/320 (54%), Gaps = 48/320 (15%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDS 60
MEFL GR L N + NLG+ EAL +LG L E D LG GGLGRLA CFLDS
Sbjct: 69 MEFLIGRLLGNNLWNLGIYDDVQEALKELGYFLMEFGEHESDPGLG-GGLGRLAGCFLDS 127
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDG-QEEVAEDWLELGNPWEIERNDVSYPVKFYGK 119
A L P GYGLRY+YG F+Q DG Q E+ ++WL+ GNPWE R+
Sbjct: 128 AADLGLPLTGYGLRYRYGYFRQSD-VDGWQVELPDEWLKYGNPWEFLRDAE--------- 177
Query: 120 IVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHT 179
V YD+P+PGY + LRLW V L FN G++
Sbjct: 178 ------------------GVPYDVPVPGYDN-RVVTLRLWQAQVGRVPLYLLDFNVGENK 218
Query: 180 KAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEE 239
+A I +LYPGD K LRLKQ+Y L SA +QDI+AR + +
Sbjct: 219 ------NDARNITRVLYPGDS----KELRLKQEYFLGSAGVQDILARGHLEHH---DLDV 265
Query: 240 FPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWS 299
+ +NDTHP L IPEL+R+LID +GLSW EAW I ++T YTNHT LPEALE W
Sbjct: 266 LADH----LNDTHPALAIPELMRLLIDEEGLSWDEAWEIVRKTFVYTNHTPLPEALETWP 321
Query: 300 FELMQKLLPRHMEIIEMIDE 319
EL +KLLPRH++II I+
Sbjct: 322 VELFKKLLPRHLQIIYEINA 341
>gnl|CDD|184948 PRK14986, PRK14986, glycogen phosphorylase; Provisional.
Length = 815
Score = 426 bits (1096), Expect = e-137
Identities = 195/405 (48%), Positives = 273/405 (67%), Gaps = 15/405 (3%)
Query: 450 VRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVTPRRWIRFCNPD 509
VRMA L VV SH VNGV+E+HS ++ +F +F K++P +F N TNGVTPRRW+ NP
Sbjct: 421 VRMAWLAVVVSHKVNGVSELHSNLMVQSLFADFAKIFPGRFCNVTNGVTPRRWLALANPS 480
Query: 510 LSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSV 569
LS++L +G W T+ +L+EL++ D + R AK NK ++ +I ++ V
Sbjct: 481 LSAVLDEHIG-RTWRTDLSQLSELKQHCDYPMVNHAVRQAKLENKKRLAEYIAQQLNVVV 539
Query: 570 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATY 629
+P A+FD+Q+KRIHEYKRQLMN+L ++ RY ++K + AK+VPRV IF GKA + Y
Sbjct: 540 NPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKA----DPDAKWVPRVNIFAGKAASAY 595
Query: 630 VQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEA 689
AK I+ I DV +N+DP+IGD LKV+F+P+Y+VS+A+L+IPA++LS+ IS AG EA
Sbjct: 596 YMAKHIIHLINDVAKVINNDPQIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEA 655
Query: 690 SGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKE--RSEGKFV 747
SGTSNMKFA+NG + IGTLDGANVE+ + VGEEN F+FG A E+ LR++ + +
Sbjct: 656 SGTSNMKFALNGALTIGTLDGANVEMLEHVGEENIFIFGNTAEEVEALRRQGYKPREYYE 715
Query: 748 PDARFEEVKKFVKSGVFG---SYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKV 804
D +V + SGVF Y +L+ SL FG D++ V D+ SY++CQ+KV
Sbjct: 716 KDEELHQVLTQIGSGVFSPEEPGRYRDLVDSL---INFG--DHYQVLADYRSYVDCQDKV 770
Query: 805 DEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVEL 849
DE Y +Q+ WTR +++N A FSSDRTI+EYA +IW+I PV L
Sbjct: 771 DELYRNQEEWTRKAMLNIANMGYFSSDRTIKEYADEIWHIDPVRL 815
Score = 334 bits (857), Expect = e-102
Identities = 156/340 (45%), Positives = 219/340 (64%), Gaps = 8/340 (2%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDS 60
MEFL GR L NA+ +LG+ AL +G LE ++ +E D LGNGGLGRLA+CFLDS
Sbjct: 77 MEFLIGRTLSNALLSLGIYDDVQGALEAMGLDLEELIDEENDPGLGNGGLGRLAACFLDS 136
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
+ATL P GYG+RY YG+FKQ I Q+E + WLE GNPWE +R++ Y V+F G+I
Sbjct: 137 LATLGLPGRGYGIRYDYGMFKQNIVNGRQKESPDYWLEYGNPWEFKRHNTRYKVRFGGRI 196
Query: 121 -VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHT 179
G K+ WI E+I AVAYD IPGY T T LRLWS SE +L FN GD+
Sbjct: 197 QQEGK--KTRWIETEEILAVAYDQIIPGYDTDATNTLRLWSAQASSE-INLGKFNQGDYF 253
Query: 180 KAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEE 239
A E ++E + +LYP D + G+ LRL+Q+Y L SA++QDI++R + + ++
Sbjct: 254 AAVEDKNHSENVSRVLYPDDSTYSGRELRLRQEYFLVSATVQDILSRHYQ---LHKTYDN 310
Query: 240 FPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWS 299
+K+A+ +NDTHP L IPEL+R+LID SW +A+ + + +YTNHT++ EALE W
Sbjct: 311 LADKIAIHLNDTHPVLSIPELMRLLIDEHKFSWDDAFEVCCQVFSYTNHTLMSEALETWP 370
Query: 300 FELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEK 339
+++ K+LPRH++II I++ + T+ +Y D DLL +
Sbjct: 371 VDMLGKILPRHLQIIFEINDYFLKTLQEQY-PNDTDLLGR 409
>gnl|CDD|233723 TIGR02094, more_P_ylases, alpha-glucan phosphorylases. This family
consists of known phosphorylases, and homologs believed
to share the function of using inorganic phosphate to
cleave an alpha 1,4 linkage between the terminal glucose
residue and the rest of the polymer (maltodextrin,
glycogen, etc.). The name of the glucose storage polymer
substrate, and therefore the name of this enzyme,
depends on the chain lengths and branching patterns. A
number of the members of this family have been shown to
operate on small maltodextrins, as may be obtained by
utilization of exogenous sources. This family represents
a distinct clade from the related family modeled by
TIGR02093/pfam00343.
Length = 601
Score = 88.9 bits (221), Expect = 3e-18
Identities = 66/283 (23%), Positives = 116/283 (40%), Gaps = 49/283 (17%)
Query: 452 MANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEK---FQNKTNGVTPRRWIRFCNP 508
M L + S NGV+++H E V+ +++ Y + E+ TNGV W P
Sbjct: 255 MTVLALRLSRIANGVSKLHGE-VSRKMWQFLYPGYEEEEVPIGYVTNGVHNPTW---VAP 310
Query: 509 DLSSILTSWLGTEDWVT--NTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTG 566
+L + +LG E+W +L E +E+L K +++ +I+ +
Sbjct: 311 ELRDLYERYLG-ENWRELLADEELWEAIDDIPDEELWE----VHLKLKARLIDYIRRRLR 365
Query: 567 YSVSPDAMFDIQVKRIHEYKRQLMN----------ILGIVYRYKKMKE----MSAVERKA 612
+ R LM +G R+ K +ER A
Sbjct: 366 ----------ERWLRRGADAAILMATDRFLDPDVLTIGFARRFATYKRADLIFRDLERLA 415
Query: 613 KFV-----PRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVS 667
+ + P +F GKA + K I++ I + PE +++F+ +Y+++
Sbjct: 416 RILNNPERPVQIVFAGKAHPADGEGKEIIQRI----VEFSKRPEFRG--RIVFLENYDIN 469
Query: 668 VAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDG 710
+A L+ ++ + +EASGTS MK AMNG + + LDG
Sbjct: 470 LARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDG 512
Score = 72.7 bits (179), Expect = 4e-13
Identities = 60/266 (22%), Positives = 99/266 (37%), Gaps = 65/266 (24%)
Query: 48 GGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGN-PWEIE 106
GGLG LA L S + L P GL YK G F+QR+ +DG ++ A + + P E
Sbjct: 19 GGLGVLAGDHLKSASDLGLPLVAVGLLYKQGYFRQRLDEDGWQQEAYPNNDFESLPIEKV 78
Query: 107 RNDVSYPVKFYGKIVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSE 166
+ G+ +K + I G + ++W V
Sbjct: 79 LDT----------------------DGKWLKI---SVRIRGRD----VYAKVWRVQVGRV 109
Query: 167 -----DFDLSAFNAGDHTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQ 221
D ++ + D I LY GD+ +R+ Q+ L ++
Sbjct: 110 PLYLLDTNIPENSEDDR-----------WITGRLYGGDKE-----MRIAQEIVLGIGGVR 153
Query: 222 DIIARFEKRSGANVNWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQR 281
+ A +N+ H E IR LI +GLS++EAW ++
Sbjct: 154 ALRALGIDPDV-------------YHLNEGHAAFVTLERIRELIA-QGLSFEEAWEAVRK 199
Query: 282 TVAYTNHTVLPEALEKWSFELMQKLL 307
+ +T HT +P + + +LM+K
Sbjct: 200 SSLFTTHTPVPAGHDVFPEDLMRKYF 225
>gnl|CDD|99995 cd04299, GT1_Glycogen_Phosphorylase_like, This family is most
closely related to the oligosaccharide phosphorylase
domain family and other unidentified sequences.
Oligosaccharide phosphorylase catalyzes the breakdown of
oligosaccharides into glucose-1-phosphate units. They
are important allosteric enzymes in carbohydrate
metabolism. The members of this family are found in
bacteria and Archaea.
Length = 778
Score = 68.7 bits (169), Expect = 9e-12
Identities = 68/296 (22%), Positives = 125/296 (42%), Gaps = 51/296 (17%)
Query: 440 AEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEK---FQNKTNG 496
E + P+ MA L + + NGV+ +H E V+ E+F + +P + + TNG
Sbjct: 332 RENPGDDPEPFNMAVLALRLAQRANGVSRLHGE-VSREMFAGLWPGFPVEEVPIGHVTNG 390
Query: 497 VTPRRWIRFCNPDLSSILTSWLGTED-WVTNTGKLAELRKFADNEDLQSQFRAAKRNNKM 555
V W+ P++ + +LG + +L E +E+L ++ +
Sbjct: 391 VHVPTWV---APEMRELYDRYLGGDWRERPTDPELWEAVDDIPDEELWE----VRQQLRR 443
Query: 556 KVVSFIKEKT-------GYSVSPDAMFDIQVKRIHEYKRQL-MNILGI-----VYRYKK- 601
+++ F++ + G S I E L N+L I YK+
Sbjct: 444 RLIEFVRRRLRRQWLRRGASAE----------EIGEADDVLDPNVLTIGFARRFATYKRA 493
Query: 602 --MKEMSAVERKAKFV-----PRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGD 654
+ + ER + + P IF GKA K +++ I + + PE
Sbjct: 494 TLL--LRDPERLKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEF----SRRPEFRG 547
Query: 655 LLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDG 710
+++F+ DY++++A L+ ++ + +EASGTS MK A+NG + + LDG
Sbjct: 548 --RIVFLEDYDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDG 601
Score = 59.1 bits (144), Expect = 7e-09
Identities = 68/268 (25%), Positives = 102/268 (38%), Gaps = 72/268 (26%)
Query: 48 GGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIER 107
GGLG LA L + + L P G GL Y+ G F+QR+ DG W+ E
Sbjct: 106 GGLGILAGDHLKAASDLGLPLVGVGLLYRQGYFRQRLDADG--------------WQQET 151
Query: 108 NDVSYPV-KFYG-KIVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPS 165
YPV F + P D GE ++ + +PG T+ R+W V
Sbjct: 152 ----YPVNDFEQLPLEPVRDAD-----GEPVRV---SVELPGR----TVYARVWKAQVGR 195
Query: 166 E-----DFDLSAFNAGDHTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASL 220
D D+ + D I LY GD+ R++Q+ L
Sbjct: 196 VPLYLLDTDIPENSPDDR-----------GITDRLYGGDQET-----RIQQEILLG---- 235
Query: 221 QDIIA--RFEKRSGANVNWEEFPEKVAV-QMNDTHPTLCIPELIRILIDLKGLSWKEAWN 277
I R + G K V MN+ H E IR L+ GLS+ EA
Sbjct: 236 ---IGGVRALRALG---------IKPTVYHMNEGHAAFLGLERIRELMAEGGLSFDEALE 283
Query: 278 ITQRTVAYTNHTVLPEALEKWSFELMQK 305
+ + +T HT +P +++ +L+++
Sbjct: 284 AVRASTVFTTHTPVPAGHDRFPPDLVER 311
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 41.5 bits (97), Expect = 0.002
Identities = 44/145 (30%), Positives = 61/145 (42%), Gaps = 21/145 (14%)
Query: 318 DEELVHTIVSEYGTADPDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELEN 377
DEE + V PD+ E + E++DLP DL + KE DV D +LE+
Sbjct: 3955 DEEEMSDDVGIDDEIQPDIQENNSQPPPENEDLDLPE---DLKLDEKEG-DVSKDSDLED 4010
Query: 378 CDEEGGPVDEEL------ESAQEDGVLEEEST-----------DVVPDDELENCDEEGGP 420
D E ++E E Q++ LEE +T D+ DDE N D
Sbjct: 4011 MDMEAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEEN 4070
Query: 421 VDEELESEQEDDVLEEEKEAEAVQE 445
V E ES ++ +EE E V E
Sbjct: 4071 VQENEESTEDGVKSDEELEQGEVPE 4095
Score = 38.4 bits (89), Expect = 0.022
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
Query: 364 KESTDVVPDDEL---ENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGP 420
+ S DV DDE+ + P + E ED L+E+ DV D +LE+ D E
Sbjct: 3958 EMSDDVGIDDEIQPDIQENNSQPPPENEDLDLPEDLKLDEKEGDVSKDSDLEDMDMEAAD 4017
Query: 421 VDEEL------ESEQEDDVLEEEKEAEAVQEPPQLVRMAN 454
++E E Q++D LEE + + +A
Sbjct: 4018 ENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAE 4057
Score = 31.9 bits (72), Expect = 2.1
Identities = 31/133 (23%), Positives = 67/133 (50%), Gaps = 11/133 (8%)
Query: 318 DEELVHTIVSEYGTADPDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELEN 377
D++L + +E TA+ L++ E R LE+ D+ D V E++D ++E ++
Sbjct: 3834 DDDLEE-LANEEDTANQSDLDE--SEARELES-DMNGVTKDSVVSENENSDS--EEENQD 3887
Query: 378 CDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQED-----D 432
DEE + E+L ++ + + +E + + + + E ++ ++ + +L S+++D D
Sbjct: 3888 LDEEVNDIPEDLSNSLNEKLWDEPNEEDLLETEQKSNEQSAANNESDLVSKEDDNKALED 3947
Query: 433 VLEEEKEAEAVQE 445
+EKE E
Sbjct: 3948 KDRQEKEDEEEMS 3960
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 38.8 bits (91), Expect = 0.013
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 372 DDELENCDEE--GGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQ 429
DDE E D++ G EE E +EDGV +E+ D DD+LE +E+ DEE + E
Sbjct: 303 DDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDD--DDDLEEEEEDVDLSDEEEDEED 360
Query: 430 EDDVLEEEKEAEAVQEP 446
ED E+++E E ++
Sbjct: 361 EDSDDEDDEEEEEEEKE 377
Score = 37.3 bits (87), Expect = 0.035
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 372 DDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQED 431
E+ +EE VD+E + +D LEEE DV DE E+ ++E +++ E E+E+
Sbjct: 317 GQGEEDEEEEEDGVDDE-DEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEE 375
Query: 432 DVLEEEKEAEAVQE 445
+++K AE+ +
Sbjct: 376 KEKKKKKSAESTRS 389
Score = 34.2 bits (79), Expect = 0.38
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 368 DVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELES 427
+ D+E E+ E +D+E E +D + + ++E DE+ D++LE
Sbjct: 285 EEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEE 344
Query: 428 EQEDDVLEEEKEAEAVQE 445
E+ED L +E+E E ++
Sbjct: 345 EEEDVDLSDEEEDEEDED 362
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 37.6 bits (87), Expect = 0.031
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 5/94 (5%)
Query: 364 KESTDVV--PDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPV 421
K S+ P + +EE +EE E +E+ +E + D+E E E
Sbjct: 423 KASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGS 482
Query: 422 DEELESEQE---DDVLEEEKEAEAVQEPPQLVRM 452
+EE+E E D EE E + RM
Sbjct: 483 EEEMEGSSEGDGDGEEPEEDAERRNSEMAGISRM 516
Score = 31.0 bits (70), Expect = 3.4
Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 5/93 (5%)
Query: 361 VKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEE-----STDVVPDDELENCD 415
V+ +E + ++E + +EE G +EE E + D EEE D ++ E+ +
Sbjct: 445 VEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAE 504
Query: 416 EEGGPVDEELESEQEDDVLEEEKEAEAVQEPPQ 448
+ + + E+ QE P
Sbjct: 505 RRNSEMAGISRMSEGQQPRGSSVQPESPQEEPL 537
>gnl|CDD|219069 pfam06512, Na_trans_assoc, Sodium ion transport-associated.
Members of this family contain a region found
exclusively in eukaryotic sodium channels or their
subunits, many of which are voltage-gated. Members very
often also contain between one and four copies of
pfam00520 and, less often, one copy of pfam00612.
Length = 230
Score = 36.2 bits (84), Expect = 0.048
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 373 DELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCD---EEGGPVDEELESEQ 429
+LEN + DE+ S G EE +LE D EG VD E E+
Sbjct: 112 SDLENLN------DEDTSSESSYGFKEESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEE 165
Query: 430 EDDVLEEEKE 439
E+++ EEE+E
Sbjct: 166 EEEIAEEEEE 175
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 36.1 bits (83), Expect = 0.084
Identities = 24/117 (20%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
Query: 332 ADPDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELES 391
DL +K ++ E++ + A D ++ +D D ++ D+E +EE ES
Sbjct: 70 ILDDLNQKYVEFLINKEHIRVLAKLQDS-ESHEDGSDGSDMDSEDSADDEEE--EEEDES 126
Query: 392 AQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEAVQEPPQ 448
+++ + +E+ D+ + E D +++ E + E++ EEKE+ +
Sbjct: 127 LEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQATREK 183
Score = 31.5 bits (71), Expect = 2.5
Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 4/89 (4%)
Query: 358 DLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEE 417
D + ++ D+ + E D +++ E E+ EE V + D+
Sbjct: 129 DEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQATREKKFDKS 188
Query: 418 GGPVDEEL--ESEQEDDVLEEEKEAEAVQ 444
G VD++ E + + E E EA
Sbjct: 189 G--VDDKFFKLDEMNEFLEATEAEEEAAL 215
Score = 30.0 bits (67), Expect = 6.0
Identities = 18/118 (15%), Positives = 44/118 (37%), Gaps = 2/118 (1%)
Query: 334 PDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQ 393
+L+ L +I + + L + K ++ + + + E S
Sbjct: 47 DELVVDGLDAEQIWQQLKLQNKPILDDLNQKYVEFLINKEHIRVLAKLQDSESHEDGSDG 106
Query: 394 EDGVLEEESTDVVPDDELENCDEEGGPVDEE--LESEQEDDVLEEEKEAEAVQEPPQL 449
D E+ + D ++E E+ ++E ++E L +E E + + + E ++
Sbjct: 107 SDMDSEDSADDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKM 164
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional.
Length = 413
Score = 35.7 bits (82), Expect = 0.11
Identities = 15/74 (20%), Positives = 21/74 (28%), Gaps = 1/74 (1%)
Query: 374 ELENCDEEGGPVDEELESAQEDGVLEEESTDVVPD-DELENCDEEGGPVDEELESEQEDD 432
E+ EE P E E E T P + E P ++ S
Sbjct: 170 SHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQ 229
Query: 433 VLEEEKEAEAVQEP 446
+E E E +
Sbjct: 230 AVEHEDEPTEPERE 243
Score = 31.1 bits (70), Expect = 2.9
Identities = 15/87 (17%), Positives = 21/87 (24%), Gaps = 1/87 (1%)
Query: 363 TKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVD 422
T S+ P P E + + E+ EE P
Sbjct: 123 TSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPT 182
Query: 423 EELESEQED-DVLEEEKEAEAVQEPPQ 448
E E + E + Q PP
Sbjct: 183 SEPEPDSPGPPQSETPTSSPPPQSPPD 209
Score = 29.2 bits (65), Expect = 10.0
Identities = 13/76 (17%), Positives = 20/76 (26%), Gaps = 2/76 (2%)
Query: 372 DDELENCDEEGGPVDEELESAQEDGVLE-EESTDVVPDDELENCDEEGGPVDEELESEQE 430
E N P L+ + ED E E T D E +S +
Sbjct: 151 PPESHNPSPNQQP-SSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPD 209
Query: 431 DDVLEEEKEAEAVQEP 446
+ + + P
Sbjct: 210 EPGEPQSPTPQQAPSP 225
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 35.4 bits (82), Expect = 0.12
Identities = 22/131 (16%), Positives = 51/131 (38%), Gaps = 1/131 (0%)
Query: 318 DEELVHTIVSEYGTADPDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELEN 377
+ +V + A + K+ +T L + S + L+
Sbjct: 55 VLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDK 114
Query: 378 CDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGG-PVDEELESEQEDDVLEE 436
D+ D ++ + +D +++ D+ DD ++ D+E D++ + + ED+ +E
Sbjct: 115 DDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKE 174
Query: 437 EKEAEAVQEPP 447
KE E + +
Sbjct: 175 AKELEKLSDDD 185
Score = 32.7 bits (75), Expect = 0.83
Identities = 14/89 (15%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
Query: 362 KTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPV 421
D+ ++ ++ D++ D + + +D E++ D DD + ++E
Sbjct: 117 DLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDD--EDEEKKE 174
Query: 422 DEELESEQEDDVLEEEKEAEAVQEPPQLV 450
+ELE +DD +++ +
Sbjct: 175 AKELEKLSDDDDFVWDEDDSEALRQARKD 203
Score = 31.9 bits (73), Expect = 1.7
Identities = 20/87 (22%), Positives = 35/87 (40%)
Query: 330 GTADPDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEEL 389
D D +K+ +L D D + D DDE ++ D++ VD+E
Sbjct: 110 NALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDED 169
Query: 390 ESAQEDGVLEEESTDVVPDDELENCDE 416
E +E LE+ S D + ++ +
Sbjct: 170 EEKKEAKELEKLSDDDDFVWDEDDSEA 196
Score = 31.5 bits (72), Expect = 2.0
Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 3/95 (3%)
Query: 354 ATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELES---AQEDGVLEEESTDVVPDDE 410
+L K D + + + V + + +D L+++ D DDE
Sbjct: 95 KLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDE 154
Query: 411 LENCDEEGGPVDEELESEQEDDVLEEEKEAEAVQE 445
++ D++ VD+E E ++E LE+ + +
Sbjct: 155 DDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVW 189
>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT
(nicotinate-mononucleotide:5, 6-dimethylbenzimidazole
phosphoribosyltransferase) [Coenzyme metabolism].
Length = 620
Score = 35.6 bits (82), Expect = 0.14
Identities = 36/164 (21%), Positives = 61/164 (37%), Gaps = 13/164 (7%)
Query: 289 TVLPEALEKWSFELMQKLLPRHMEIIE--MIDEELVHTIVSEYGTADPDLLEKRLKE--- 343
+L E +K +F +E ++ E+L + DL +++
Sbjct: 130 AMLEEKYDKANFSKRTDKEDAPLEEAVALLVREKLTGDAPPDSAGKVLDLWRDEIEDKAG 189
Query: 344 ---TRILENVDLPATFADLFVKTKESTDV---VPDDEL-ENCDEEGGPVDEELESAQED- 395
+ +D FA + S D+ DD + E+ DEE G D+ + +
Sbjct: 190 EDLDGLAAEIDDQQAFARVVRDMLGSMDMAEETGDDGIEEDADEEDGDDDQPDNNEDSEA 249
Query: 396 GVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKE 439
G E E +D +DE E D EG + + ED +E E
Sbjct: 250 GREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDE 293
Score = 31.4 bits (71), Expect = 2.4
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
Query: 346 ILENVDLPATFADLFVK-TKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTD 404
+L ++D+ D ++ + D D N D E G ES D E+E+
Sbjct: 212 MLGSMDMAEETGDDGIEEDADEEDGDDDQPDNNEDSEAG----REESEGSDESEEDEAEA 267
Query: 405 VVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEA 440
D E E + + E+ ES++ D+ E E
Sbjct: 268 T--DGEGEEGEMDAAEASEDSESDESDEDTETPGED 301
>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890). This
family is conserved in dsDNA adenoviruses of
vertebrates. The function is not known.
Length = 172
Score = 34.1 bits (78), Expect = 0.15
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 407 PDDELENCDEEGGPV--DEELESEQEDDVLEEEKEAEAVQEP 446
DE E+ D + V DEE + ED + EE++EAE V+E
Sbjct: 17 TKDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEE 58
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 35.1 bits (80), Expect = 0.16
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 370 VPDDELE---NCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELE 426
V D+E E + +EE VDE +E D E++S D + + N E V+E +E
Sbjct: 436 VEDNEEEHSGDANEEELSVDEHVEEHNADDSGEQQSDDESGEHQSVNEIVEEQSVNEHVE 495
Query: 427 SEQEDDVLEEEKEAEAVQEP 446
D++E+E E V+EP
Sbjct: 496 EPTVADIVEQETVDEHVEEP 515
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 34.6 bits (80), Expect = 0.20
Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 372 DDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQED 431
+E E ++ + + +E+ EE D + E + + + E +SE E+
Sbjct: 79 KEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKE--IESSDSEDEE 136
Query: 432 DVLEEEKEAEAVQE 445
+ E K+A+ +
Sbjct: 137 EKDEAAKKAKEDSD 150
Score = 31.9 bits (73), Expect = 1.2
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 372 DDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQED 431
++E E ++E + E + D E ES+D +DE EE ++ E D
Sbjct: 101 EEEWEVEEDEDSDDEGEWIDVESDK--EIESSD--SEDE-----EEKDEAAKK-AKEDSD 150
Query: 432 DVLEEEKEAEAVQEPPQ 448
+ L EE E EA +E
Sbjct: 151 EELSEEDEEEAAEEEEA 167
Score = 30.4 bits (69), Expect = 4.0
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 372 DDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQED 431
+E E+ D+EG +D ES +E + E + + + ++ + EE E E +
Sbjct: 106 VEEDEDSDDEGEWIDV--ESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAE 163
Query: 432 DVLEEEKEAEA 442
+ E ++ +A
Sbjct: 164 EEEAEAEKEKA 174
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 35.0 bits (80), Expect = 0.22
Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 14/99 (14%)
Query: 363 TKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGG--- 419
V + E E +++ E ++ + E ++ +++ E +E G
Sbjct: 795 EGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDG 854
Query: 420 -----------PVDEELESEQEDDVLEEEKEAEAVQEPP 447
+EE E E+E++ EEE+E E E P
Sbjct: 855 GGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEP 893
Score = 30.3 bits (68), Expect = 5.3
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 379 DEEGGPVDEELESAQED-GVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEE 437
+E G + E + QE G +E + D + E E + EG E E E E + EE
Sbjct: 679 NESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEG 738
Query: 438 KEAE 441
+E E
Sbjct: 739 EEVE 742
Score = 30.0 bits (67), Expect = 6.3
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 372 DDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQED 431
+ E E+ G + E + A G E E + + E E ++EG E+E+ +E
Sbjct: 684 EIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEG-----EIETGEEG 738
Query: 432 DVLEEEKEAEA 442
+ +E+E E EA
Sbjct: 739 EEVEDEGEGEA 749
>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM). This
family consists of several Plasmodium falciparum SPAM
(secreted polymorphic antigen associated with
merozoites) proteins. Variation among SPAM alleles is
the result of deletions and amino acid substitutions in
non-repetitive sequences within and flanking the alanine
heptad-repeat domain. Heptad repeats in which the a and
d position contain hydrophobic residues generate
amphipathic alpha-helices which give rise to helical
bundles or coiled-coil structures in proteins. SPAM is
an example of a P. falciparum antigen in which a
repetitive sequence has features characteristic of a
well-defined structural element.
Length = 164
Score = 33.3 bits (76), Expect = 0.23
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 7/101 (6%)
Query: 342 KETRILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEE 401
K+ +LE+V + + + +K E V D++ E+ +EE +EE+E ++ E+
Sbjct: 18 KDENLLEHVKITSWDKEDIIKENED---VKDEKQEDDEEEEEEDEEEIEEPEDI----ED 70
Query: 402 STDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEA 442
++V D+E E DEE +++E + +D+ ++ A
Sbjct: 71 EEEIVEDEEEEEEDEEDNVDLKDIEKKNINDIFNSTQDDNA 111
>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit. This model
describes Pseudomonas denitrificans CobT gene product,
which is a cobalt chelatase subunit that functions in
cobalamin biosynthesis. Cobalamin (vitamin B12) can be
synthesized via several pathways, including an aerobic
pathway (found in Pseudomonas denitrificans) and an
anaerobic pathway (found in P. shermanii and Salmonella
typhimurium). These pathways differ in the point of
cobalt insertion during corrin ring formation. There are
apparently a number of variations on these two pathways,
where the major differences seem to be concerned with
the process of ring contraction. Confusion regarding the
functions of enzymes found in the aerobic vs. anaerobic
pathways has arisen because nonhomologous genes in these
different pathways were given the same gene symbols.
Thus, cobT in the aerobic pathway (P. denitrificans) is
not a homolog of cobT in the anaerobic pathway (S.
typhimurium). It should be noted that E. coli
synthesizes cobalamin only when it is supplied with the
precursor cobinamide, which is a complex intermediate.
Additionally, all E. coli cobalamin synthesis genes
(cobU, cobS and cobT) were named after their Salmonella
typhimurium homologs which function in the anaerobic
cobalamin synthesis pathway. This model describes the
aerobic cobalamin pathway Pseudomonas denitrificans CobT
gene product, which is a cobalt chelatase subunit, with
a MW ~70 kDa. The aerobic pathway cobalt chelatase is a
heterotrimeric, ATP-dependent enzyme that catalyzes
cobalt insertion during cobalamin biosynthesis. The
other two subunits are the P. denitrificans CobS
(TIGR01650) and CobN (pfam02514 CobN/Magnesium
Chelatase) proteins. To avoid potential confusion with
the nonhomologous Salmonella typhimurium/E.coli cobT
gene product, the P. denitrificans gene symbol is not
used in the name of this model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 600
Score = 34.1 bits (78), Expect = 0.30
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 7/101 (6%)
Query: 346 ILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDV 405
+L +++L D ++++ D D EN EE G E E ++G +ES
Sbjct: 193 MLRSMELAEEMGDD-TESEDEEDGDDDQPTENEQEEQG----EGEGEGQEGSAPQESE-- 245
Query: 406 VPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEAVQEP 446
D E E+ +EE D++ ++ DD E E P
Sbjct: 246 ATDRESESGEEEMVQSDQDDLPDESDDDSETPGEGARPARP 286
Score = 34.1 bits (78), Expect = 0.30
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 373 DELENCDEEGGPVDEELESAQED-GVLEEESTDVVPDDELENCDEEGGPVDEELESEQED 431
D+ E+ DEE G D+ E+ QE+ G E E + E E D E +EE+ + +
Sbjct: 205 DDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEM-VQSDQ 263
Query: 432 DVLEEEKEAEAVQEPPQLVRMAN 454
D L +E + ++ + P + R A
Sbjct: 264 DDLPDESDDDS-ETPGEGARPAR 285
>gnl|CDD|177354 PHA02151, PHA02151, hypothetical protein.
Length = 217
Score = 33.4 bits (76), Expect = 0.36
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 19/84 (22%)
Query: 120 IVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHT 179
I+ G G W+ +DI +D+P P + + + W TM HT
Sbjct: 91 ILGGLTGVMDWLDNDDI---TFDVPTPDFNLEIKTSFNRWPTM---------------HT 132
Query: 180 KAAEALTNAEKIC-YILYPGDESV 202
AE A+ +C Y Y G+ V
Sbjct: 133 AGAEPYGRADGLCLYAGYKGNADV 156
>gnl|CDD|99959 cd01635, Glycosyltransferase_GTB_type, Glycosyltransferases
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. The acceptor molecule can be a lipid,
a protein, a heterocyclic compound, or another
carbohydrate residue. The structures of the formed
glycoconjugates are extremely diverse, reflecting a wide
range of biological functions. The members of this
family share a common GTB topology, one of the two
protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility.
Length = 229
Score = 33.4 bits (76), Expect = 0.39
Identities = 21/151 (13%), Positives = 40/151 (26%), Gaps = 31/151 (20%)
Query: 578 QVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVK 637
V R+ K I + K + + G + +
Sbjct: 109 FVGRLAPEKGLDDLIE------------AFALLKERGPDLKLVIAGDGPEREYLEELLAA 156
Query: 638 FITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPA-SELSQHISTAGMEASGTSNMK 696
+ L +VIF+ + L+ A +++ + + E G ++
Sbjct: 157 --------------LLLLDRVIFLGGLDPEELLALLLAAADVF--VLPSLREGFGLVVLE 200
Query: 697 FAMNGCILIGTLDGANVEIRQEVGEENFFLF 727
G +I T G EI L
Sbjct: 201 AMACGLPVIATDVGGPPEI--VEDGLTGLLV 229
>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in
mRNA processing and transport [Signal transduction
mechanisms / RNA processing and modification].
Length = 388
Score = 33.7 bits (77), Expect = 0.44
Identities = 29/121 (23%), Positives = 44/121 (36%), Gaps = 8/121 (6%)
Query: 322 VHTIVSEYGTADPDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELENCDEE 381
+ + +Y ++ + V L + KE D D E+ E
Sbjct: 274 LMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELADFG--DYYEDIFE- 330
Query: 382 GGPVDEELESAQEDGVLEEESTDVVPDDELENCDE-EGGPVDEELESEQEDDVLEEEKEA 440
E+ QE V+ EESTD +DE+E + + EL Q DD+ E E
Sbjct: 331 ----VVEVVEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQVDDLAERLAET 386
Query: 441 E 441
E
Sbjct: 387 E 387
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 1001
Score = 33.8 bits (77), Expect = 0.48
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 380 EEGG------PVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDV 433
E+GG D+E + ++E+ V E E++ DE + DEE E+L ++ ++
Sbjct: 916 EDGGWSFLMVGSDDESDESEEE-VSEYEASSDDESDETDE-DEESDESSEDLSEDESEND 973
Query: 434 LEEEKEAEAVQE 445
+E++ E E
Sbjct: 974 SSDEEDGEDWDE 985
>gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing
[Transcription / Chromatin structure and dynamics].
Length = 279
Score = 33.0 bits (75), Expect = 0.49
Identities = 25/146 (17%), Positives = 49/146 (33%), Gaps = 3/146 (2%)
Query: 303 MQKLLPRHMEIIEMIDEEL-VHTIVSEYGTADPDLLEKRLKETRILENVDLPATFADLFV 361
+ +E E++ + E P + + +N + P D+
Sbjct: 117 YPGITKLEKSDVEEPSEKVDEEDVEREILAEKPRVTRFNIVWDNDEDNDEAPPAQPDVDN 176
Query: 362 KTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDE--EGG 419
+ +E + E E +E G E + EE +D ++ E +
Sbjct: 177 EEEERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGSDDGEDVVDYEGERIDKK 236
Query: 420 PVDEELESEQEDDVLEEEKEAEAVQE 445
+EE E+ ++ E E E E+ E
Sbjct: 237 QGEEEEMEEEVINLFEIEWEEESPSE 262
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 33.0 bits (75), Expect = 0.70
Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 4/93 (4%)
Query: 362 KTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPV 421
+ D + + ++ D+EG D S + E + E+ E
Sbjct: 261 GKRGGDDDADEYDSDDGDDEGREED--YISDSSASGNDPEEREDKLSPEIPAKPEIE--Q 316
Query: 422 DEELESEQEDDVLEEEKEAEAVQEPPQLVRMAN 454
DE+ E +E+ EE ++ ++ +L N
Sbjct: 317 DEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKN 349
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 32.8 bits (74), Expect = 0.90
Identities = 22/118 (18%), Positives = 43/118 (36%), Gaps = 8/118 (6%)
Query: 333 DPDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVD-----E 387
+P+ K + + F + K+ + +L++ ++ +D E
Sbjct: 536 EPEDFFDVSKVANESISSNHEKLMESEFEELKKKWSSL--AQLKSRFQKDATLDSIEGEE 593
Query: 388 ELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEAVQE 445
EL E G E+ D + E + G V E E ++ E E+E A ++
Sbjct: 594 ELIQDDEKGNFEDLE-DEENSSDNEMEESRGSSVTAENEESADEVDYETEREENARKK 650
Score = 30.1 bits (67), Expect = 7.1
Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 13/173 (7%)
Query: 268 KGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHTIVS 327
S K NI + + Y E +E++ E + +++ + E +
Sbjct: 491 YSQSGKRGRNIQK--IFYDESLSPEECIEEYKGESAKS---SESDLVVQDEPEDFFDVSK 545
Query: 328 EYGTADPDLLEKRLKET--RILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPV 385
+ EK ++ + + A F K + ++EL DE+G
Sbjct: 546 VANESISSNHEKLMESEFEELKKKWSSLAQLKSRFQKDATLDSIEGEEELIQDDEKGNFE 605
Query: 386 DEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEK 438
D E E D +EE V + E+ D + + E+E+E++ ++E+
Sbjct: 606 DLEDEENSSDNEMEESRGSSVTAENEESAD------EVDYETEREENARKKEE 652
>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT. This family
consists of several bacterial cobalamin biosynthesis
(CobT) proteins. CobT is involved in the transformation
of precorrin-3 into cobyrinic acid.
Length = 282
Score = 32.5 bits (74), Expect = 0.93
Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 11/98 (11%)
Query: 345 RILENVDLPATFADLFVKTKESTDVVP---DDELENCDEEGGPVDEELESAQEDGVLEEE 401
R+ VD FA + S D+ D+ E+ D+ E +D EEE
Sbjct: 184 RLAACVDDQQAFARVVRDMLSSMDMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEE 243
Query: 402 STDV--------VPDDELENCDEEGGPVDEELESEQED 431
S +E+E+ + E + + +D
Sbjct: 244 SGSSDSLSEDSDASSEEMESGEMEAAEASADDTPDSDD 281
>gnl|CDD|227880 COG5593, COG5593, Nucleic-acid-binding protein possibly involved in
ribosomal biogenesis [Translation, ribosomal structure
and biogenesis].
Length = 821
Score = 32.3 bits (73), Expect = 1.4
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 8/117 (6%)
Query: 328 EYGTADPDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDE--LENCDEEGGPV 385
D + + L ++R +V+ + ++L + +D DDE L+ D+E
Sbjct: 681 SDDEMDENEIWSALVKSR--PDVEDDSDDSELDFAEDDFSDSTSDDEPKLDAIDDEDAKS 738
Query: 386 DEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEA 442
+ ES QE+G+ E + D ++ E EE ES +E+ EE KE A
Sbjct: 739 EGSQESDQEEGLDEIFYSFDGEQDNSDSFAES----SEEDESSEEEKEEEENKEVSA 791
>gnl|CDD|217861 pfam04050, Upf2, Up-frameshift suppressor 2. Transcripts
harbouring premature signals for translation termination
are recognised and rapidly degraded by eukaryotic cells
through a pathway known as nonsense-mediated mRNA decay.
In Saccharomyces cerevisiae, three trans-acting factors
(Upf1 to Upf3) are required for nonsense-mediated mRNA
decay.
Length = 171
Score = 30.8 bits (70), Expect = 1.5
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 383 GPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEA 442
G DEEL ED +E +PDDE DEE +E++ ++++ ++ E EAE
Sbjct: 10 GEEDEELPEEDEDDESSDEEEVDLPDDEQ---DEESDSEEEQIFVTRQEEEVDPEAEAEF 66
Query: 443 VQE 445
+E
Sbjct: 67 DRE 69
>gnl|CDD|236410 PRK09202, nusA, transcription elongation factor NusA; Validated.
Length = 470
Score = 31.8 bits (73), Expect = 1.8
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 25/130 (19%)
Query: 335 DLLEKRLKETR-----ILENVDLPATFADLFVK----TKESTDVVPDDEL---ENCDEEG 382
+ EKR E +E +D+ A L V+ + E VP +EL E DEE
Sbjct: 342 EASEKRQAEFDAILDLFMEALDIDEEIAQLLVEEGFSSLEELAYVPVEELLEIEGFDEE- 400
Query: 383 GPVDEELESA------QEDGVLEEESTDVVPDDELE-----NCDEEGGPVDEELESEQED 431
V+E E A + E+ + D++ + L+ E+G E+L + D
Sbjct: 401 -TVEELRERAKEALETEALAQEEKLADDLLSLEGLDRELAFKLAEKGIKTLEDLAEQAVD 459
Query: 432 DVLEEEKEAE 441
++++ E + E
Sbjct: 460 ELIDIEGDEE 469
>gnl|CDD|232988 TIGR00468, pheS, phenylalanyl-tRNA synthetase, alpha subunit. Most
phenylalanyl-tRNA synthetases are heterodimeric, with 2
alpha (pheS) and 2 beta (pheT) subunits. This model
describes the alpha subunit, which shows some similarity
to class II aminoacyl-tRNA ligases. Mitochondrial
phenylalanyl-tRNA synthetase is a single polypeptide
chain, active as a monomer, and similar to this chain
rather than to the beta chain, but excluded from this
model. An interesting feature of the alignment of all
sequences captured by this model is a deep split between
non-spirochete bacterial examples and all other
examples; supporting this split is a relative deletion
of about 50 residues in the former set between two
motifs well conserved throughout the alignment [Protein
synthesis, tRNA aminoacylation].
Length = 293
Score = 31.1 bits (71), Expect = 1.9
Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 20/106 (18%)
Query: 553 NKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKA 612
++ ++ + K I+E K +L + L + K E + + K
Sbjct: 7 KQLGKLTKEETKPALG-----------ALINEVKIELQDELT---KLKPELESAGLWSKL 52
Query: 613 KF------VPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEI 652
KF +P I+ G I +G T PE+
Sbjct: 53 KFETYDVSLPGTKIYPGSLHPLTRVIDEIRDIFLGLGFTEETGPEV 98
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 31.3 bits (71), Expect = 2.4
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 397 VLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEA 442
+E+E VPD+E E EE +E+ ++E+ EEEKE +
Sbjct: 26 WVEKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKK 71
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 30.5 bits (69), Expect = 2.6
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 373 DELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDD 432
E E D + ++E+ E+ +EE D E E ++E D E +E + +
Sbjct: 1 MEKECKDAKHENMEEDCCKENEN---KEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIE 57
Query: 433 VLEEEK 438
L++E
Sbjct: 58 ELKDEN 63
>gnl|CDD|224530 COG1614, CdhC, CO dehydrogenase/acetyl-CoA synthase beta subunit
[Energy production and conversion].
Length = 470
Score = 30.9 bits (70), Expect = 3.1
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 399 EEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEAVQEP 446
EE++T + D+ E E+G PV E E+E++ EEE+EA + P
Sbjct: 377 EEDATTI--DELREFLKEKGHPVVERWAEEEEEEEEEEEEEAAEAEAP 422
>gnl|CDD|184885 PRK14891, PRK14891, 50S ribosomal protein L24e/unknown domain
fusion protein; Provisional.
Length = 131
Score = 29.5 bits (66), Expect = 3.4
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 388 ELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEA 442
E A ED E+ DE E DE +E ++E E+ EE++EAEA
Sbjct: 77 EAADADEDADEAAEADAADEADEEEETDEAVDETADEADAEAEEADEEEDEEAEA 131
Score = 28.0 bits (62), Expect = 9.8
Identities = 15/61 (24%), Positives = 24/61 (39%)
Query: 387 EELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEAVQEP 446
E E+ + + +T E + DE E++ D+ EEE+ EAV E
Sbjct: 51 EWTEAGRAEKGPAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDET 110
Query: 447 P 447
Sbjct: 111 A 111
>gnl|CDD|235302 PRK04456, PRK04456, acetyl-CoA decarbonylase/synthase complex
subunit beta; Reviewed.
Length = 463
Score = 30.8 bits (70), Expect = 3.5
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 399 EEESTDVVPDDELEN-CDEEGGPVDEELESEQEDDVLEEEKEAEAVQEPPQLVRMANL 455
EE+ D+ +EL+ E+ PV E +E+E++ EEE+E E ++ +
Sbjct: 378 EEDVKDI---EELKKFLKEKEHPVVERWAAEEEEEEEEEEEEEEEPVAEVMMMPAPEM 432
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA
synthetases. Valine amino-acyl tRNA synthetase (ValRS)
catalytic core domain. This enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. ValRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements. This editing region
hydrolyzes mischarged cognate tRNAs and thus prevents
the incorporation of chemically similar amino acids.
Length = 382
Score = 30.7 bits (70), Expect = 3.5
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 217 SASLQDIIARFEKRSGANVNW 237
+ ++QDIIAR+++ G NV W
Sbjct: 23 NNTIQDIIARYKRMKGYNVLW 43
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 30.6 bits (69), Expect = 3.7
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Query: 361 VKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVL----EEESTDVVPDDELENCDE 416
++++ + E ++ DEE D E +Q DG+L +EE + P N D
Sbjct: 175 SESEDESKSEESAEDDSDDEEEEDSDSED-YSQYDGMLVDSSDEEEGEEAPSIN-YNEDT 232
Query: 417 EGGPVDEELESEQEDDVLEEEKEAEAVQEPP 447
DE E + + +E+ + P
Sbjct: 233 SESESDESDSEISESRSVSDSEESSPPSKKP 263
>gnl|CDD|224181 COG1261, FlgA, Flagellar basal body P-ring biosynthesis protein
[Cell motility and secretion / Posttranslational
modification, protein turnover, chaperones].
Length = 220
Score = 30.0 bits (68), Expect = 3.9
Identities = 24/146 (16%), Positives = 41/146 (28%), Gaps = 12/146 (8%)
Query: 134 EDIKAVAYDIPIPGYKTKTTINLRLWST-MVPSEDFDLSAFNAGDHTKAAEALTNAEKIC 192
I P Y + N R+W V + +L F E + A I
Sbjct: 46 LIITERNLLAPCDQYLLTASNNARVWGNVNVLASCSNLPRFVRVAVQAPGEVVVAARTI- 104
Query: 193 YILYPGD-------ESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEFPEKVA 245
Y G+ + G + L Y L + +++ G + +
Sbjct: 105 ---YRGEKISAADVKLKRGDLDALPPGYVLDPDEVVGKVSKRTLLPGQPILASMLRQAWL 161
Query: 246 VQMNDTHPTLCIPELIRILIDLKGLS 271
V+ + I I + K L
Sbjct: 162 VKRGQIVTVVAEGGGISITAEGKALE 187
>gnl|CDD|225880 COG3343, RpoE, DNA-directed RNA polymerase, delta subunit
[Transcription].
Length = 175
Score = 29.7 bits (67), Expect = 4.4
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 359 LFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEG 418
+ K D E DE+ DE+ E +E+ + D D++ ++ +
Sbjct: 94 MTEKKDIKAKDKEVDAFEEGDEDELDYDEDKE--EEEDDEVDSLDDENDDEDEDDDEIVE 151
Query: 419 GPVDEELESEQEDDVLEEEKEAE 441
++++ E EDD +EE E +
Sbjct: 152 ILIEDDEVDEDEDDDEDEEDEED 174
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi. This family includes
the fifth essential DNA polymerase in yeast EC:2.7.7.7.
Pol5p is localised exclusively to the nucleolus and
binds near or at the enhancer region of rRNA-encoding
DNA repeating units.
Length = 784
Score = 30.6 bits (69), Expect = 4.4
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 395 DGVLEEESTDVVPDDELENCDEEGGPVDEELESEQED-DVLEEEKEAEAVQEPPQL 449
+G E+E DD+ + C E + E ES+ ED + E+E +AEA + +
Sbjct: 646 EGEEEDEDDLEETDDDEDEC-EAIEDSESESESDGEDGEEDEQEDDAEANEGVVPI 700
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 30.0 bits (68), Expect = 4.9
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 8/61 (13%)
Query: 386 DEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDE-----ELESEQEDDVLEEEKEA 440
EE E + EEE D ++ +EE VD E + + DD E EKE
Sbjct: 22 LEEDEFFWTYLLFEEEEDD---EEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKEL 78
Query: 441 E 441
+
Sbjct: 79 Q 79
>gnl|CDD|218561 pfam05340, DUF740, Protein of unknown function (DUF740). This
family consists of several uncharacterized plant
proteins of unknown function.
Length = 565
Score = 30.4 bits (68), Expect = 4.9
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Query: 369 VVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDE--ELE 426
+VPD LE +EE+E +++ E+E VV + E +EE + + +LE
Sbjct: 134 IVPDLVLE--------EEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKDFIDLE 185
Query: 427 SEQEDDVLEEEKE 439
S+ + +++ +
Sbjct: 186 SQTKKPSVKDNGK 198
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase. The model describes
alanine--tRNA ligase. This enzyme catalyzes the reaction
(tRNAala + L-alanine + ATP = L-alanyl-tRNAala +
pyrophosphate + AMP) [Protein synthesis, tRNA
aminoacylation].
Length = 851
Score = 30.4 bits (69), Expect = 5.1
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 11/99 (11%)
Query: 309 RHMEIIEM---IDEELVHTIVSEYGTADPDLLEK--------RLKETRILENVDLPATFA 357
RH + + + +LV T++ G P+L EK L+E R + ++
Sbjct: 312 RHGKKLGLKEAFLYKLVPTLIEVLGDYYPELKEKQEFVEQILELEEERFAKTLERGLRLF 371
Query: 358 DLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDG 396
+ +K ++ +D + D G PV+ E A+E G
Sbjct: 372 EKLLKKLGKKELDGEDAFKLYDTYGFPVELTKEIAEERG 410
>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor
[Transcription].
Length = 392
Score = 30.1 bits (67), Expect = 5.1
Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 3/118 (2%)
Query: 335 DLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQ- 393
L ++ KE E V F + + + + + + E G +E+L+
Sbjct: 225 VLKDE--KELARQERVSSWENFKEEPGEPLSRPALKKEKQGAEEEGEEGMSEEDLDVGAA 282
Query: 394 EDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEAVQEPPQLVR 451
E E D E E + ++ + EE+ E E + +L+
Sbjct: 283 EIENKEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTELLA 340
>gnl|CDD|221279 pfam11867, DUF3387, Domain of unknown function (DUF3387). This
domain is functionally uncharacterized. This domain is
found in bacteria and archaea. This presumed domain is
typically between 255 to 340 amino acids in length. This
domain is found associated with pfam04851, pfam04313.
Length = 333
Score = 30.2 bits (69), Expect = 5.2
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 12/58 (20%)
Query: 168 FDLSAFNAGDHTKAAEALTNAEKICYILYPGDESVEGK------VLRLKQQYTLCSAS 219
FD S F GD + + L A +IL G + +GK VL L + + LCS
Sbjct: 34 FDYSDFFTGDPAERLKLLLGAAN--HIL--GLD--DGKKRFLDAVLALSKAFALCSPH 85
>gnl|CDD|223190 COG0112, GlyA, Glycine/serine hydroxymethyltransferase [Amino acid
transport and metabolism].
Length = 413
Score = 29.9 bits (68), Expect = 5.6
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 605 MSAVERKAKFV-PRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 649
VE+ AK V P++ I GG A++ + KR + +VGA + D
Sbjct: 155 YDEVEKLAKEVKPKLIIAGGSAYSRPIDFKRFREIADEVGAYLMVD 200
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 30.2 bits (68), Expect = 5.7
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 362 KTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTD-VVPDDELENCDEEGGP 420
K + S V ++ E + V E ESA+ G+ E+E D P E + +EE
Sbjct: 232 KKEASESTVKEESEEESGKR--DVILEDESAEPTGLDEDEDEDEPKPSGERSDSEEETEE 289
Query: 421 VD----EELESEQEDDVLEEEKEAEAVQEPPQ 448
+ + L+ ED+ +E++E E V E P
Sbjct: 290 KEKEKRKRLKKMMEDE--DEDEEMEIVPESPV 319
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase.
Length = 379
Score = 29.8 bits (67), Expect = 5.8
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 439 EAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVT 498
+A ++ E +L+ MAN GS ++NG H +E N + F N T G T
Sbjct: 235 DARSLYENCRLISMANPVPPGSKSINGAVTAHGRTSKDE--NTGF-----SFVNCTIGGT 287
Query: 499 PRRWI 503
R W+
Sbjct: 288 GRIWL 292
>gnl|CDD|187568 cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, extended (e) SDRs.
CDP-tyvelose 2-epimerase is a tetrameric SDR that
catalyzes the conversion of CDP-D-paratose to
CDP-D-tyvelose, the last step in tyvelose biosynthesis.
This subgroup is a member of the extended SDR subfamily,
with a characteristic active site tetrad and NAD-binding
motif. Extended SDRs are distinct from classical SDRs.
In addition to the Rossmann fold (alpha/beta folding
pattern with a central beta-sheet) core region typical
of all SDRs, extended SDRs have a less conserved
C-terminal extension of approximately 100 amino acids.
Extended SDRs are a diverse collection of proteins, and
include isomerases, epimerases, oxidoreductases, and
lyases; they typically have a TGXXGXXG cofactor binding
motif. SDRs are a functionally diverse family of
oxidoreductases that have a single domain with a
structurally conserved Rossmann fold, an
NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Sequence identity between different
SDR enzymes is typically in the 15-30% range; they
catalyze a wide range of activities including the
metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase numbering). In
addition to the Tyr and Lys, there is often an upstream
Ser and/or an Asn, contributing to the active site;
while substrate binding is in the C-terminal region,
which determines specificity. The standard reaction
mechanism is a 4-pro-S hydride transfer and proton relay
involving the conserved Tyr and Lys, a water molecule
stabilized by Asn, and nicotinamide. Atypical SDRs
generally lack the catalytic residues characteristic of
the SDRs, and their glycine-rich NAD(P)-binding motif is
often different from the forms normally seen in
classical or extended SDRs. Complex (multidomain) SDRs
such as ketoreductase domains of fatty acid synthase
have a GGXGXXG NAD(P)-binding motif and an altered
active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Length = 337
Score = 29.6 bits (67), Expect = 6.7
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 23/63 (36%)
Query: 793 DFPSYLECQEKVDEAYCDQKRWTR-------------MSIMNTA---GSSKFSSDRTIQE 836
D P+YL +E + R+ + + G+SK ++D+ +QE
Sbjct: 131 DLPNYLPLEE-------LETRYELAPEGWSPAGISESFPLDFSHSLYGASKGAADQYVQE 183
Query: 837 YAR 839
Y R
Sbjct: 184 YGR 186
>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional.
Length = 449
Score = 29.8 bits (67), Expect = 7.5
Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 370 VPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQ 429
+ D + + E V E + +E+ L+ E+ + + ++ E +E+ EL
Sbjct: 370 IKDSAEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDA--RLRELYPLP 427
Query: 430 EDDVLEEEKEAEAVQEPPQLVR 451
ED+ +E++ EA E + R
Sbjct: 428 EDEFEDEDELEEAQPEEEEEAR 449
>gnl|CDD|226883 COG4477, EzrA, Negative regulator of septation ring formation [Cell
division and chromosome partitioning].
Length = 570
Score = 29.7 bits (67), Expect = 8.1
Identities = 40/152 (26%), Positives = 73/152 (48%), Gaps = 21/152 (13%)
Query: 309 RHMEIIEMIDEELVHTIVSEYGTADPDLLEK------RLKETR-ILENVDLPATFADLFV 361
HM + I E + ++++E T P L+ +KE LE+V++ + L
Sbjct: 204 EHMIALRSIMER-IPSLLAELQTELPGQLQDLKAGYRDMKEEGYHLEHVNIDSRLERLKE 262
Query: 362 KTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLE---------EESTDVVPDDELE 412
+ E+++++ EL+ +EE G + E++ES + +LE EE+ ++PD LE
Sbjct: 263 QLVENSELLTQLELDEAEEELGLIQEKIESLYD--LLEREVEAKNVVEENLPILPDY-LE 319
Query: 413 NCDEEGGPVDEELESEQEDDVLEEEKEAEAVQ 444
E + EE+E +E L E E +V+
Sbjct: 320 KAKENNEHLKEEIERVKESYRLAET-ELGSVR 350
>gnl|CDD|235030 PRK02315, PRK02315, adaptor protein; Provisional.
Length = 233
Score = 29.0 bits (66), Expect = 8.7
Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 19/94 (20%)
Query: 346 ILENVDLPATFA----------------DLFV-KTKESTDVVPDDELENCDEEGGP--VD 386
+++ VD FA ++FV K+K + +D ++ +E
Sbjct: 44 MMDEVDEEDDFADEGPLWFQVTPNEKGLEVFVTKSKLDLPLNFEDLIDLPSDEDIEDLFP 103
Query: 387 EELESAQEDGVLEEESTDVVPDDELENCDEEGGP 420
E+ E + +++ D E E + E
Sbjct: 104 EDFFKLLEQSLEDKDDLDATAKQEKEEKEAEDEV 137
>gnl|CDD|226907 COG4530, COG4530, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 129
Score = 28.3 bits (63), Expect = 8.8
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 366 STDVVPDDELENCDEEGGPVDEELESAQ-EDGVLEEESTDVVPD-DELENCDEEGGPVDE 423
+ D ++E E +E +EE+E ED + + D +PD + E+ D + D
Sbjct: 45 TPDAAAEEEEEEVVKEVDAENEEVEVVSLEDADDDPKGGDDLPDLGDDEDVDLDDDDDDT 104
Query: 424 ELESEQEDDVLEEE 437
LE E++DD
Sbjct: 105 FLEDEEDDDDDVSG 118
>gnl|CDD|223020 PHA03246, PHA03246, large tegument protein UL36; Provisional.
Length = 3095
Score = 29.6 bits (66), Expect = 9.1
Identities = 24/132 (18%), Positives = 41/132 (31%), Gaps = 18/132 (13%)
Query: 319 EELVHTIVSEYGTADPDLLEKRLKETR----ILENVDLPA----TFADLFVKTKEST--- 367
EE++ + YGTAD L R E + + D P+ + + T +S
Sbjct: 285 EEIISAVSRLYGTADIVLDLGRADEEDNLKVVSADFDPPSRPQPWQTKIVIGTADSYADS 344
Query: 368 -DVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENC-DEEGGPVDEEL 425
+ + + E G D + ++ +C G V E
Sbjct: 345 SPKLHSESTDLTPHEHGEYDPSTLVGG-----ASTNINISDPPARTDCRRYSEGSVIHES 399
Query: 426 ESEQEDDVLEEE 437
+DV E
Sbjct: 400 VDSHIEDVTEAT 411
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase. The valyl-tRNA synthetase
(ValS) is a class I amino acyl-tRNA ligase and is
particularly closely related to the isoleucyl tRNA
synthetase [Protein synthesis, tRNA aminoacylation].
Length = 861
Score = 29.6 bits (67), Expect = 9.6
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 219 SLQDIIARFEKRSGANVNW 237
S+QDIIAR+++ G NV W
Sbjct: 57 SIQDIIARYKRMKGYNVLW 75
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid).
Members of this family are bacterial proteins with a
conserved motif [KR]FYDLN, sometimes flanked by a pair
of CXXC motifs, followed by a long region of low
complexity sequence in which roughly half the residues
are Asp and Glu, including multiple runs of five or more
acidic residues. The function of members of this family
is unknown.
Length = 104
Score = 27.7 bits (62), Expect = 9.6
Identities = 14/58 (24%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 384 PVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELES--EQEDDVLEEEKE 439
P + ++A++D E+E V+ DD+ ++ D++ +D++ + +DD LE++ +
Sbjct: 46 PAADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDDDDFLEDDDD 103
>gnl|CDD|184308 PRK13761, PRK13761, hypothetical protein; Provisional.
Length = 248
Score = 29.0 bits (66), Expect = 9.8
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 256 CIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALE 296
+P + +LK +E I + Y N L EAL+
Sbjct: 200 AVPNMTEYARELKKKDREELEEIVEN---YDNKKNLSEALK 237
>gnl|CDD|218258 pfam04774, HABP4_PAI-RBP1, Hyaluronan / mRNA binding family. This
family includes the HABP4 family of hyaluronan-binding
proteins, and the PAI-1 mRNA-binding protein, PAI-RBP1.
HABP4 has been observed to bind hyaluronan (a
glucosaminoglycan), but it is not known whether this is
its primary role in vivo. It has also been observed to
bind RNA, but with a lower affinity than that for
hyaluronan. PAI-1 mRNA-binding protein specifically
binds the mRNA of type-1 plasminogen activator inhibitor
(PAI-1), and is thought to be involved in regulation of
mRNA stability. However, in both cases, the sequence
motifs predicted to be important for ligand binding are
not conserved throughout the family, so it is not known
whether members of this family share a common function.
Length = 106
Score = 27.8 bits (62), Expect = 9.8
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 383 GPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEA 442
G V +E+ E+ EEE +V +E + G V+EE E+ED + E E E
Sbjct: 28 GSVKDEIAELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDKEMTLE-EYEK 86
Query: 443 VQE 445
+
Sbjct: 87 ALQ 89
>gnl|CDD|218418 pfam05076, SUFU, Suppressor of fused protein (SUFU). SUFU,
encoding the human orthologue of Drosophila suppressor
of fused, appears to have a conserved role in the
repression of Hedgehog signaling. SUFU exerts its
repressor role by physically interacting with GLI
proteins in both the cytoplasm and the nucleus. SUFU has
been found to be a tumour-suppressor gene that
predisposes individuals to medulloblastoma by modulating
the SHH signaling pathway. Genomic contextual analysis
of bacterial SUFU versions revealed that they are
immunity proteins against diverse nuclease toxins in
polymorphic toxin systems.
Length = 168
Score = 28.4 bits (64), Expect = 9.9
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 15/56 (26%)
Query: 366 STDVVPDDELENCDEEGGPV---------DEELESAQEDGV------LEEESTDVV 406
+ + D EL D GG V +EELE A+E+G LEE D+
Sbjct: 109 TAPFLFDPELPELDTPGGKVNFLQLVPITEEELEFAKENGAEALLELLEEGGIDIT 164
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.134 0.396
Gapped
Lambda K H
0.267 0.0539 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 44,622,083
Number of extensions: 4549592
Number of successful extensions: 5392
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4878
Number of HSP's successfully gapped: 195
Length of query: 850
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 745
Effective length of database: 6,280,432
Effective search space: 4678921840
Effective search space used: 4678921840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.5 bits)