Query 003075
Match_columns 850
No_of_seqs 395 out of 1590
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 16:32:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003075.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003075hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08875 START_ArGLABRA2_like C 100.0 1.5E-75 3.3E-80 605.7 18.7 211 163-376 1-229 (229)
2 PF08670 MEKHLA: MEKHLA domain 100.0 1.8E-58 4E-63 450.4 17.3 148 701-850 1-148 (148)
3 PF01852 START: START domain; 99.7 7.1E-18 1.5E-22 171.6 10.7 199 168-373 1-201 (206)
4 smart00234 START in StAR and p 99.7 1.5E-16 3.3E-21 162.2 15.8 199 169-376 2-205 (206)
5 KOG0483 Transcription factor H 99.7 4.9E-17 1.1E-21 166.4 9.9 114 16-137 49-164 (198)
6 KOG0843 Transcription factor E 99.5 3.1E-14 6.8E-19 141.4 6.0 63 17-83 102-164 (197)
7 KOG0489 Transcription factor z 99.5 2.8E-14 6.2E-19 152.8 5.0 62 16-81 158-219 (261)
8 KOG0488 Transcription factor B 99.4 7E-14 1.5E-18 152.7 5.9 64 15-82 170-233 (309)
9 KOG0842 Transcription factor t 99.4 5.6E-14 1.2E-18 151.7 4.3 66 17-86 153-218 (307)
10 KOG0487 Transcription factor A 99.4 6.9E-14 1.5E-18 151.1 3.5 65 18-86 236-300 (308)
11 KOG0850 Transcription factor D 99.4 2.3E-13 4.9E-18 140.0 5.7 68 9-80 114-181 (245)
12 PF00046 Homeobox: Homeobox do 99.4 4.1E-13 9E-18 110.9 5.7 57 18-78 1-57 (57)
13 KOG0492 Transcription factor M 99.4 4.6E-13 1E-17 135.5 5.9 65 13-81 140-204 (246)
14 KOG0484 Transcription factor P 99.3 7.9E-13 1.7E-17 120.8 4.9 60 16-79 16-75 (125)
15 KOG0848 Transcription factor C 99.3 5.7E-13 1.2E-17 139.1 3.4 56 21-80 203-258 (317)
16 KOG0493 Transcription factor E 99.3 2E-12 4.3E-17 134.5 5.2 59 16-78 245-303 (342)
17 KOG0485 Transcription factor N 99.3 1.8E-12 3.8E-17 132.0 4.2 59 18-80 105-163 (268)
18 cd00177 START Lipid-binding ST 99.3 4.5E-11 9.7E-16 119.1 12.3 185 172-373 2-189 (193)
19 KOG0494 Transcription factor C 99.2 5.1E-12 1.1E-16 131.4 5.4 58 21-82 145-202 (332)
20 COG5576 Homeodomain-containing 99.2 1.1E-11 2.3E-16 123.4 5.9 66 12-81 46-111 (156)
21 KOG2251 Homeobox transcription 99.2 8.8E-12 1.9E-16 127.9 5.2 63 15-81 35-97 (228)
22 smart00389 HOX Homeodomain. DN 99.2 1.9E-11 4E-16 100.2 5.1 55 19-77 2-56 (56)
23 cd00086 homeodomain Homeodomai 99.2 2.9E-11 6.4E-16 99.7 6.1 56 19-78 2-57 (59)
24 KOG0491 Transcription factor B 99.1 2E-11 4.4E-16 119.9 1.0 63 17-83 100-162 (194)
25 TIGR01565 homeo_ZF_HD homeobox 99.1 9.1E-11 2E-15 98.4 4.7 52 18-73 2-57 (58)
26 KOG4577 Transcription factor L 99.1 7.3E-11 1.6E-15 124.4 4.9 73 4-80 146-226 (383)
27 cd08868 START_STARD1_3_like Ch 99.1 2.3E-09 5E-14 110.9 14.9 195 166-378 6-208 (208)
28 KOG0847 Transcription factor, 99.1 7.9E-11 1.7E-15 120.1 3.8 68 12-83 162-229 (288)
29 cd08871 START_STARD10-like Lip 99.0 3.8E-09 8.2E-14 110.3 14.9 191 171-380 9-205 (222)
30 cd08867 START_STARD4_5_6-like 99.0 6.7E-09 1.4E-13 107.3 15.1 190 166-373 3-202 (206)
31 KOG3802 Transcription factor O 99.0 2E-10 4.2E-15 126.9 3.0 59 16-78 293-351 (398)
32 cd08904 START_STARD6-like Lipi 99.0 6.3E-09 1.4E-13 108.1 14.0 168 167-347 4-178 (204)
33 KOG0844 Transcription factor E 99.0 1.7E-10 3.7E-15 122.4 2.0 60 18-81 182-241 (408)
34 KOG0486 Transcription factor P 98.9 6E-10 1.3E-14 119.3 4.2 63 16-82 111-173 (351)
35 cd08903 START_STARD5-like Lipi 98.8 6.4E-08 1.4E-12 100.7 14.6 188 167-373 4-202 (208)
36 cd08905 START_STARD1-like Chol 98.8 4.3E-08 9.2E-13 102.1 12.6 190 166-373 6-203 (209)
37 PLN00188 enhanced disease resi 98.6 1.3E-07 2.7E-12 112.0 10.0 129 213-349 227-365 (719)
38 KOG0490 Transcription factor, 98.6 2.8E-08 6E-13 103.4 3.5 61 16-80 59-119 (235)
39 cd08869 START_RhoGAP C-termina 98.6 2.9E-07 6.3E-12 95.0 11.0 166 171-351 4-173 (197)
40 cd08906 START_STARD3-like Chol 98.6 8.4E-07 1.8E-11 92.6 14.4 190 166-373 6-203 (209)
41 cd08909 START_STARD13-like C-t 98.6 3.7E-07 8E-12 95.1 11.5 128 213-351 52-181 (205)
42 KOG0849 Transcription factor P 98.4 3.3E-07 7.1E-12 102.7 5.4 59 18-80 177-235 (354)
43 KOG1168 Transcription factor A 98.4 1.4E-07 3E-12 100.1 2.3 61 16-80 308-368 (385)
44 cd08902 START_STARD4-like Lipi 98.2 6.3E-06 1.4E-10 85.3 10.5 178 167-361 4-186 (202)
45 cd08908 START_STARD12-like C-t 98.1 1.4E-05 3E-10 83.4 9.5 167 169-351 10-180 (204)
46 KOG0775 Transcription factor S 98.0 4.4E-06 9.5E-11 88.8 4.5 51 24-78 183-233 (304)
47 cd08874 START_STARD9-like C-te 98.0 2.7E-05 5.8E-10 81.3 9.9 127 215-350 47-181 (205)
48 cd08910 START_STARD2-like Lipi 97.9 9.7E-05 2.1E-09 77.1 11.3 175 184-376 23-205 (207)
49 PF13426 PAS_9: PAS domain; PD 97.9 0.00011 2.4E-09 64.6 10.0 101 741-846 1-101 (104)
50 cd08907 START_STARD8-like C-te 97.8 0.0002 4.3E-09 74.6 12.2 167 169-350 10-180 (205)
51 cd08870 START_STARD2_7-like Li 97.7 0.00075 1.6E-08 70.3 14.6 191 172-376 6-207 (209)
52 cd08872 START_STARD11-like Cer 97.7 0.00028 6.1E-09 75.2 10.8 169 169-347 7-199 (235)
53 cd08877 START_2 Uncharacterize 97.6 0.0008 1.7E-08 70.2 12.5 175 167-351 4-190 (215)
54 cd08876 START_1 Uncharacterize 97.5 0.00047 1E-08 70.2 10.3 147 213-373 41-191 (195)
55 PF05920 Homeobox_KN: Homeobox 97.5 5.7E-05 1.2E-09 59.1 2.7 34 38-75 7-40 (40)
56 cd08873 START_STARD14_15-like 97.5 0.00026 5.6E-09 75.5 7.6 121 214-343 78-203 (235)
57 KOG0774 Transcription factor P 97.4 7.5E-05 1.6E-09 78.9 2.9 57 18-78 189-248 (334)
58 KOG2252 CCAAT displacement pro 97.2 0.00053 1.2E-08 79.4 5.9 58 16-77 419-476 (558)
59 cd08914 START_STARD15-like Lip 97.1 0.0021 4.6E-08 68.6 9.2 132 213-356 78-215 (236)
60 cd08913 START_STARD14-like Lip 97.1 0.0037 8.1E-08 67.0 10.8 124 216-353 84-216 (240)
61 cd08911 START_STARD7-like Lipi 97.0 0.0028 6E-08 66.1 8.9 148 213-373 45-201 (207)
62 KOG0490 Transcription factor, 96.9 0.00092 2E-08 69.7 4.6 61 17-81 153-213 (235)
63 PF00989 PAS: PAS fold; Inter 96.8 0.017 3.7E-07 51.5 11.4 108 733-845 2-111 (113)
64 PF08448 PAS_4: PAS fold; Int 96.6 0.02 4.4E-07 50.8 10.2 104 739-848 3-106 (110)
65 PRK13557 histidine kinase; Pro 96.2 0.039 8.6E-07 63.4 12.1 113 731-845 29-142 (540)
66 cd08904 START_STARD6-like Lipi 95.4 0.8 1.7E-05 48.2 17.0 174 416-683 20-203 (204)
67 KOG1146 Homeobox protein [Gene 95.3 0.012 2.7E-07 74.0 3.6 63 17-83 903-965 (1406)
68 PRK13559 hypothetical protein; 94.8 0.21 4.6E-06 55.0 11.2 114 731-846 42-156 (361)
69 cd08869 START_RhoGAP C-termina 94.5 3.6 7.8E-05 42.7 18.8 57 416-489 17-73 (197)
70 cd08907 START_STARD8-like C-te 94.5 3.6 7.9E-05 43.4 18.6 58 415-489 24-81 (205)
71 cd08871 START_STARD10-like Lip 94.2 3.1 6.8E-05 43.7 17.8 65 406-489 13-79 (222)
72 TIGR00229 sensory_box PAS doma 93.8 0.97 2.1E-05 37.1 10.8 108 733-846 4-113 (124)
73 PF11569 Homez: Homeodomain le 93.6 0.063 1.4E-06 45.2 2.9 42 28-73 9-50 (56)
74 PRK09413 IS2 repressor TnpA; R 93.5 0.26 5.6E-06 47.4 7.5 94 19-125 8-102 (121)
75 PRK11091 aerobic respiration c 93.4 0.52 1.1E-05 58.0 11.9 110 732-846 155-265 (779)
76 KOG0773 Transcription factor M 93.3 0.04 8.7E-07 61.6 1.8 57 18-78 240-299 (342)
77 cd00130 PAS PAS domain; PAS mo 92.4 2.3 4.9E-05 32.8 10.4 98 741-844 2-100 (103)
78 TIGR02938 nifL_nitrog nitrogen 92.1 0.58 1.3E-05 52.8 9.1 110 732-846 4-114 (494)
79 cd08876 START_1 Uncharacterize 90.7 16 0.00034 37.2 17.0 57 415-489 14-72 (195)
80 cd08864 SRPBCC_DUF3074 DUF3074 90.5 0.32 7E-06 51.2 4.6 109 236-350 66-183 (208)
81 cd00177 START Lipid-binding ST 90.4 18 0.00039 35.8 16.8 126 418-598 15-148 (193)
82 cd08877 START_2 Uncharacterize 90.3 13 0.00027 39.0 16.2 66 404-489 10-77 (215)
83 PF00170 bZIP_1: bZIP transcri 90.3 1.2 2.6E-05 38.1 7.1 45 73-117 19-63 (64)
84 TIGR02040 PpsR-CrtJ transcript 90.2 2.2 4.8E-05 48.9 11.4 84 733-820 134-218 (442)
85 KOG4196 bZIP transcription fac 89.7 7.3 0.00016 38.3 12.5 39 21-75 21-59 (135)
86 smart00340 HALZ homeobox assoc 89.6 0.6 1.3E-05 37.1 4.2 27 91-117 9-35 (44)
87 PRK13558 bacterio-opsin activa 89.4 2.7 5.9E-05 50.8 11.9 106 739-846 156-261 (665)
88 PRK13560 hypothetical protein; 89.4 2.3 4.9E-05 51.7 11.3 109 734-846 206-316 (807)
89 cd08868 START_STARD1_3_like Ch 88.9 27 0.00059 36.3 17.4 56 416-489 22-80 (208)
90 TIGR02040 PpsR-CrtJ transcript 88.5 2.3 4.9E-05 48.8 9.9 95 734-835 254-350 (442)
91 cd08874 START_STARD9-like C-te 87.9 3.6 7.8E-05 43.3 10.1 55 415-488 19-75 (205)
92 KOG2761 START domain-containin 87.2 0.91 2E-05 48.2 5.1 158 172-341 15-183 (219)
93 cd08909 START_STARD13-like C-t 87.0 45 0.00098 35.3 17.8 54 418-488 27-80 (205)
94 PF13188 PAS_8: PAS domain; PD 86.0 0.94 2E-05 37.5 3.7 40 733-780 2-42 (64)
95 cd08875 START_ArGLABRA2_like C 85.1 5.8 0.00013 42.7 9.9 164 396-599 3-181 (229)
96 cd08906 START_STARD3-like Chol 84.3 58 0.0013 34.3 17.8 70 399-488 8-80 (209)
97 PRK11073 glnL nitrogen regulat 84.0 3.3 7.2E-05 45.3 7.9 91 734-832 10-100 (348)
98 PRK11359 cyclic-di-GMP phospho 83.8 6.7 0.00015 48.1 11.2 102 740-846 145-247 (799)
99 smart00234 START in StAR and p 83.3 20 0.00044 36.6 12.9 130 417-599 18-157 (206)
100 PRK10060 RNase II stability mo 82.0 8.6 0.00019 47.0 11.1 97 734-836 113-211 (663)
101 PRK09776 putative diguanylate 81.3 6.9 0.00015 49.9 10.3 109 731-844 282-392 (1092)
102 smart00338 BRLZ basic region l 81.1 5.8 0.00013 33.9 6.7 35 91-125 30-64 (65)
103 cd08870 START_STARD2_7-like Li 80.9 76 0.0016 33.1 17.0 58 417-489 21-82 (209)
104 PF08447 PAS_3: PAS fold; Int 80.9 9.9 0.00021 32.9 8.3 82 758-841 2-88 (91)
105 cd08908 START_STARD12-like C-t 80.9 78 0.0017 33.5 16.2 54 419-489 28-81 (204)
106 KOG3623 Homeobox transcription 80.7 2 4.3E-05 52.2 4.7 48 29-80 568-615 (1007)
107 KOG4005 Transcription factor X 80.3 5 0.00011 43.0 7.0 57 69-125 81-142 (292)
108 PF02183 HALZ: Homeobox associ 79.6 5.7 0.00012 32.2 5.6 39 87-125 5-43 (45)
109 cd08911 START_STARD7-like Lipi 79.6 81 0.0018 33.0 15.9 57 416-489 19-77 (207)
110 cd08913 START_STARD14-like Lip 78.0 27 0.00058 37.8 12.0 55 415-489 56-112 (240)
111 cd08873 START_STARD14_15-like 75.4 4.1 8.9E-05 43.9 4.9 53 416-488 53-107 (235)
112 PF04218 CENP-B_N: CENP-B N-te 74.6 4.8 0.0001 33.4 4.1 47 18-73 1-47 (53)
113 PF01852 START: START domain; 71.9 1.2E+02 0.0026 30.8 15.7 148 400-598 2-156 (206)
114 PRK11360 sensory histidine kin 71.6 34 0.00073 39.7 11.7 106 734-846 264-370 (607)
115 PRK09776 putative diguanylate 70.6 25 0.00054 44.9 11.1 102 739-846 544-650 (1092)
116 PF13596 PAS_10: PAS domain; P 70.3 21 0.00044 32.5 7.7 97 740-846 8-104 (106)
117 PRK11359 cyclic-di-GMP phospho 67.9 23 0.0005 43.5 9.7 102 734-841 15-120 (799)
118 cd08910 START_STARD2-like Lipi 67.2 9.9 0.00021 39.9 5.5 65 408-489 13-81 (207)
119 cd08866 SRPBCC_11 Ligand-bindi 67.2 54 0.0012 31.1 10.2 132 216-376 2-143 (144)
120 KOG3119 Basic region leucine z 66.7 11 0.00024 41.4 6.0 30 96-125 224-253 (269)
121 TIGR00219 mreC rod shape-deter 66.6 8.9 0.00019 42.4 5.2 36 92-127 71-110 (283)
122 smart00338 BRLZ basic region l 66.2 32 0.00069 29.4 7.5 45 73-117 19-63 (65)
123 cd05018 CoxG Carbon monoxide d 65.8 56 0.0012 30.6 9.9 120 217-357 5-124 (144)
124 KOG4571 Activating transcripti 65.3 14 0.00029 41.0 6.2 39 75-113 243-281 (294)
125 cd08914 START_STARD15-like Lip 65.2 9.6 0.00021 41.2 5.0 55 415-489 53-109 (236)
126 cd07821 PYR_PYL_RCAR_like Pyra 64.6 71 0.0015 29.5 10.3 35 218-252 6-40 (140)
127 PRK13922 rod shape-determining 64.3 12 0.00025 40.8 5.6 38 90-127 72-112 (276)
128 cd08860 TcmN_ARO-CYC_like N-te 64.2 51 0.0011 32.6 9.6 108 216-345 4-113 (146)
129 PF07716 bZIP_2: Basic region 63.6 21 0.00045 29.6 5.6 15 109-123 33-47 (54)
130 PRK00888 ftsB cell division pr 62.9 20 0.00044 33.9 6.2 47 62-108 14-62 (105)
131 PF06005 DUF904: Protein of un 62.8 17 0.00037 32.4 5.2 33 92-124 23-55 (72)
132 cd07813 COQ10p_like Coenzyme Q 61.8 52 0.0011 31.2 9.0 134 217-377 3-137 (138)
133 KOG4196 bZIP transcription fac 60.7 31 0.00068 34.0 7.0 29 97-125 77-105 (135)
134 smart00091 PAS PAS domain. PAS 57.9 42 0.0009 23.5 6.0 57 736-796 5-62 (67)
135 cd08903 START_STARD5-like Lipi 57.8 16 0.00034 38.4 4.9 55 416-488 20-78 (208)
136 PF02183 HALZ: Homeobox associ 57.2 17 0.00037 29.5 3.9 34 93-126 4-37 (45)
137 KOG0709 CREB/ATF family transc 57.1 26 0.00055 41.2 6.8 39 91-129 276-314 (472)
138 PRK13560 hypothetical protein; 56.6 76 0.0016 38.7 11.3 107 734-846 334-461 (807)
139 PF00170 bZIP_1: bZIP transcri 54.5 76 0.0016 27.0 7.7 37 88-124 27-63 (64)
140 cd08867 START_STARD4_5_6-like 52.9 2.8E+02 0.0061 28.7 17.2 66 399-488 9-78 (206)
141 PRK10724 hypothetical protein; 52.8 1.2E+02 0.0026 30.6 10.1 134 216-378 18-154 (158)
142 cd08861 OtcD1_ARO-CYC_like N-t 52.7 69 0.0015 30.3 8.1 33 217-249 3-37 (142)
143 cd08902 START_STARD4-like Lipi 52.3 3.2E+02 0.007 29.1 18.6 56 415-488 20-77 (202)
144 cd08905 START_STARD1-like Chol 52.2 3E+02 0.0066 28.8 17.0 72 398-489 7-81 (209)
145 PRK10884 SH3 domain-containing 51.8 47 0.001 35.2 7.3 40 86-125 131-170 (206)
146 PF06156 DUF972: Protein of un 51.7 37 0.00081 32.4 5.9 39 91-129 19-57 (107)
147 PRK11006 phoR phosphate regulo 51.7 34 0.00075 39.0 6.9 49 732-784 98-147 (430)
148 PF06005 DUF904: Protein of un 51.5 54 0.0012 29.2 6.5 44 82-125 20-63 (72)
149 KOG4343 bZIP transcription fac 50.8 36 0.00078 40.6 6.7 30 99-128 307-336 (655)
150 KOG4343 bZIP transcription fac 50.5 21 0.00046 42.4 4.8 37 84-120 306-342 (655)
151 KOG4005 Transcription factor X 50.1 34 0.00073 37.0 5.8 47 79-125 103-149 (292)
152 COG3074 Uncharacterized protei 49.9 42 0.00092 29.8 5.4 42 84-125 22-63 (79)
153 TIGR02966 phoR_proteo phosphat 47.4 63 0.0014 34.3 7.6 48 734-785 8-56 (333)
154 PRK15422 septal ring assembly 47.0 50 0.0011 30.0 5.5 42 84-125 22-63 (79)
155 PRK13169 DNA replication intia 46.3 52 0.0011 31.7 6.0 38 91-128 19-56 (110)
156 PF01166 TSC22: TSC-22/dip/bun 45.7 32 0.00068 29.6 3.9 33 93-125 13-45 (59)
157 cd08872 START_STARD11-like Cer 45.4 55 0.0012 35.2 6.8 62 411-488 19-83 (235)
158 cd07819 SRPBCC_2 Ligand-bindin 45.0 2.2E+02 0.0047 26.4 10.1 110 216-346 5-114 (140)
159 PRK10820 DNA-binding transcrip 44.8 1.2E+02 0.0025 36.5 10.0 100 734-846 82-184 (520)
160 COG1415 Uncharacterized conser 43.8 1.2E+02 0.0025 34.9 9.0 126 686-826 7-161 (373)
161 KOG3119 Basic region leucine z 43.7 56 0.0012 36.0 6.6 32 97-128 218-249 (269)
162 PF07407 Seadorna_VP6: Seadorn 43.3 32 0.00068 38.8 4.5 30 573-602 337-376 (420)
163 TIGR03752 conj_TIGR03752 integ 43.2 62 0.0013 38.4 7.1 27 23-52 41-67 (472)
164 COG4026 Uncharacterized protei 42.7 88 0.0019 33.7 7.5 46 83-128 145-190 (290)
165 PF07716 bZIP_2: Basic region 40.7 1.7E+02 0.0036 24.2 7.5 23 100-122 31-53 (54)
166 PF15058 Speriolin_N: Sperioli 40.0 40 0.00087 35.4 4.5 39 90-129 8-46 (200)
167 TIGR02894 DNA_bind_RsfA transc 39.9 68 0.0015 32.9 6.0 38 87-124 104-141 (161)
168 KOG4571 Activating transcripti 38.6 85 0.0018 35.0 6.9 38 87-124 248-285 (294)
169 PHA03155 hypothetical protein; 37.6 34 0.00075 33.0 3.3 25 103-127 10-34 (115)
170 PF14197 Cep57_CLD_2: Centroso 37.4 1.7E+02 0.0036 25.9 7.3 39 87-125 26-64 (69)
171 cd07822 SRPBCC_4 Ligand-bindin 35.9 3.4E+02 0.0074 24.9 9.9 32 217-248 4-35 (141)
172 COG1792 MreC Cell shape-determ 35.7 61 0.0013 36.0 5.4 37 92-128 71-110 (284)
173 PF01527 HTH_Tnp_1: Transposas 35.1 15 0.00032 31.7 0.4 43 19-70 2-45 (76)
174 PF05812 Herpes_BLRF2: Herpesv 34.9 42 0.00091 32.7 3.4 27 103-129 5-31 (118)
175 PF08172 CASP_C: CASP C termin 34.5 94 0.002 34.0 6.5 43 85-127 91-133 (248)
176 PF06637 PV-1: PV-1 protein (P 34.4 1.9E+02 0.004 33.6 8.8 27 99-125 354-380 (442)
177 PHA03162 hypothetical protein; 34.3 41 0.00089 33.3 3.3 25 103-127 15-39 (135)
178 cd06171 Sigma70_r4 Sigma70, re 33.6 56 0.0012 24.9 3.5 43 23-74 10-52 (55)
179 PF04977 DivIC: Septum formati 33.1 65 0.0014 27.9 4.2 19 107-125 30-48 (80)
180 PRK00888 ftsB cell division pr 33.0 59 0.0013 30.9 4.1 30 85-114 32-61 (105)
181 PF04967 HTH_10: HTH DNA bindi 32.0 61 0.0013 27.2 3.5 38 24-65 1-40 (53)
182 PF09744 Jnk-SapK_ap_N: JNK_SA 31.4 3.8E+02 0.0082 27.4 9.8 30 96-125 84-113 (158)
183 PRK13729 conjugal transfer pil 31.4 1.3E+02 0.0028 35.9 7.3 43 84-126 80-122 (475)
184 PRK10884 SH3 domain-containing 30.7 1.3E+02 0.0028 32.0 6.6 36 92-127 130-165 (206)
185 PF06785 UPF0242: Uncharacteri 30.5 1.5E+02 0.0033 33.8 7.2 62 67-128 53-119 (401)
186 TIGR03752 conj_TIGR03752 integ 30.3 1.6E+02 0.0036 35.0 7.8 19 83-101 76-94 (472)
187 cd04765 HTH_MlrA-like_sg2 Heli 30.2 67 0.0015 29.9 3.9 21 47-71 3-23 (99)
188 PRK03975 tfx putative transcri 30.1 1.5E+02 0.0032 29.8 6.5 48 21-78 4-51 (141)
189 KOG1962 B-cell receptor-associ 30.1 1.3E+02 0.0028 32.3 6.4 20 107-126 192-211 (216)
190 PF10226 DUF2216: Uncharacteri 29.1 2E+02 0.0043 30.4 7.3 32 71-103 47-78 (195)
191 TIGR02449 conserved hypothetic 28.7 1.8E+02 0.004 25.6 6.0 29 91-119 18-46 (65)
192 PF12808 Mto2_bdg: Micro-tubul 28.6 76 0.0016 26.7 3.5 23 105-127 26-48 (52)
193 PF10604 Polyketide_cyc2: Poly 27.0 4.9E+02 0.011 23.8 13.7 36 217-252 6-41 (139)
194 PF13936 HTH_38: Helix-turn-he 26.7 72 0.0016 25.3 3.0 41 20-69 1-41 (44)
195 cd00569 HTH_Hin_like Helix-tur 26.3 1.3E+02 0.0029 20.3 4.2 40 21-69 3-42 (42)
196 COG2202 AtoS FOG: PAS/PAC doma 26.2 4.6E+02 0.01 23.2 9.3 78 738-819 119-198 (232)
197 PF07558 Shugoshin_N: Shugoshi 25.6 57 0.0012 26.6 2.2 37 88-124 8-44 (46)
198 PF04545 Sigma70_r4: Sigma-70, 25.4 1.2E+02 0.0027 24.1 4.2 39 23-70 4-42 (50)
199 PF10224 DUF2205: Predicted co 25.4 2.5E+02 0.0055 25.6 6.5 43 85-127 21-63 (80)
200 PRK11086 sensory histidine kin 25.2 3.3E+02 0.0071 31.6 9.4 91 739-846 229-322 (542)
201 PF06156 DUF972: Protein of un 25.1 1.4E+02 0.003 28.6 5.1 37 92-128 13-49 (107)
202 cd04769 HTH_MerR2 Helix-Turn-H 24.9 4.2E+02 0.0092 25.1 8.5 38 20-74 34-71 (116)
203 TIGR02894 DNA_bind_RsfA transc 24.9 1.7E+02 0.0037 30.1 5.9 47 80-126 104-150 (161)
204 PF07334 IFP_35_N: Interferon- 24.7 1.1E+02 0.0024 27.7 4.1 26 98-123 4-29 (76)
205 PF15035 Rootletin: Ciliary ro 24.7 1.9E+02 0.0041 30.2 6.4 43 83-125 77-119 (182)
206 KOG0709 CREB/ATF family transc 24.4 2.2E+02 0.0048 33.8 7.4 97 22-129 219-321 (472)
207 PLN00188 enhanced disease resi 23.8 3.6E+02 0.0079 33.9 9.4 96 469-599 236-341 (719)
208 cd08865 SRPBCC_10 Ligand-bindi 23.6 5.7E+02 0.012 23.3 10.9 37 218-254 4-40 (140)
209 cd04766 HTH_HspR Helix-Turn-He 23.5 3.9E+02 0.0084 24.2 7.6 74 47-126 4-90 (91)
210 TIGR02209 ftsL_broad cell divi 23.4 1.4E+02 0.0031 26.3 4.7 19 107-125 37-55 (85)
211 PF07407 Seadorna_VP6: Seadorn 23.3 95 0.002 35.2 4.1 21 92-112 37-57 (420)
212 KOG0288 WD40 repeat protein Ti 22.9 2.6E+02 0.0055 32.9 7.4 45 82-126 29-73 (459)
213 PF10481 CENP-F_N: Cenp-F N-te 22.9 1.8E+02 0.004 32.3 6.1 21 108-128 109-129 (307)
214 PF14662 CCDC155: Coiled-coil 22.7 1.9E+02 0.0041 30.6 5.9 40 86-125 80-119 (193)
215 PF05529 Bap31: B-cell recepto 22.7 2.2E+02 0.0047 29.4 6.5 33 94-126 154-186 (192)
216 KOG4797 Transcriptional regula 22.3 1.5E+02 0.0032 28.6 4.6 31 92-122 65-95 (123)
217 PF14197 Cep57_CLD_2: Centroso 22.1 3.2E+02 0.0069 24.2 6.4 35 91-125 23-57 (69)
218 PF08826 DMPK_coil: DMPK coile 21.2 5.6E+02 0.012 22.3 7.5 32 93-124 24-55 (61)
219 KOG2391 Vacuolar sorting prote 20.9 2.7E+02 0.0058 32.0 6.9 43 79-121 224-266 (365)
220 KOG1146 Homeobox protein [Gene 20.6 31 0.00067 45.2 -0.3 55 20-78 447-501 (1406)
221 PRK09644 RNA polymerase sigma 20.3 1.6E+02 0.0034 29.0 4.7 39 24-71 109-147 (165)
222 KOG3755 SATB1 matrix attachmen 20.2 38 0.00083 40.9 0.4 72 7-80 681-758 (769)
No 1
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=100.00 E-value=1.5e-75 Score=605.68 Aligned_cols=211 Identities=36% Similarity=0.592 Sum_probs=195.3
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCCCceEecCCCCC---CCCcccceecc------CCCcceeeeeeeEEeeChhhHHHHhc
Q 003075 163 PAGLLAVAEETLAEFLSKATGTAVDWVQMIGMKP---GPDSIGIVAVS------RNCSGVAARACGLVSLDPTKIAEILK 233 (850)
Q Consensus 163 ~~~l~~~A~~am~Ell~la~~~~plWi~~~g~~~---g~~~~~~~~~~------~~~~~eASR~~glV~m~~~~LVe~lm 233 (850)
+++|++||++||+||++||++++|+|++++|+|+ ++|.|+..+++ .||++||||+||+|+||+.+|||+||
T Consensus 1 k~~~~~lA~~am~Ell~~a~~~~plWi~~~~~~~~~l~~dey~~~f~~~~~~~~~~~~~eASR~~glV~m~~~~lVe~lm 80 (229)
T cd08875 1 KSGLLELAEEAMDELLKLAQGGEPLWIKSPGMKPEILNPDEYERMFPRHGGSKPGGFTTEASRACGLVMMNAIKLVEILM 80 (229)
T ss_pred ChHHHHHHHHHHHHHHHHhccCCCCceecCCCCccccCHHHHhhcccCcCCCCCCCCeEEEEeeeEEEecCHHHHHHHHh
Confidence 4689999999999999999999999999999877 78888554332 35999999999999999999999999
Q ss_pred CccchhhcCCcc----eeeeeccCCC----ccHHHHHHHhhcccccccccceeeEEeeccccCCCcEEEEEeecCCCCCC
Q 003075 234 DCPSWFRDCRCL----DVLSVIPTGN----GGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGG 305 (850)
Q Consensus 234 D~~~W~~~f~~~----~~l~~~~~g~----~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~ 305 (850)
|++||.++||++ +|+.++++|+ +|+|||||+|||+||||||+|||||||||||++||+|||||||+|+.+.
T Consensus 81 D~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~~- 159 (229)
T cd08875 81 DVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQT- 159 (229)
T ss_pred ChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeeccccc-
Confidence 999999999876 9999999996 7899999999999999999999999999999999999999999998763
Q ss_pred CCCCCCCccccccccccceeeeecCCCceEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHH-HHHH
Q 003075 306 PTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAM-RHIR 376 (850)
Q Consensus 306 ~~~~~~~~f~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~Rpl~~Sg~afgar~~~~aL-r~~e 376 (850)
.++.++|+||||+|||||||||+|||||||||||+|||++.+|.+||++++||+||||+||+++| ||||
T Consensus 160 --~p~~~~~~r~~~~PSGcLIq~~~nG~SkVtwVeH~e~d~~~~~~l~~~l~~sg~AfgA~rw~a~lqRqce 229 (229)
T cd08875 160 --APPPASFVRCRRLPSGCLIQDMPNGYSKVTWVEHVEVDEKPVHLLYRYLVSSGLAFGATRWVATLQRQCE 229 (229)
T ss_pred --CCCCCCccEEEEecCcEEEEECCCCceEEEEEEEEeccCCcccccchhhhhhhHHHHHHHHHHHHHHhcC
Confidence 33455789999999999999999999999999999999999999999999999999999999999 7997
No 2
>PF08670 MEKHLA: MEKHLA domain; InterPro: IPR013978 The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins.
Probab=100.00 E-value=1.8e-58 Score=450.42 Aligned_cols=148 Identities=41% Similarity=0.620 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHhcCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccc
Q 003075 701 PEALTLARWISRSYRIHTGGELLRADSLTGDALLKQLWHHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIML 780 (850)
Q Consensus 701 pe~~~l~~~i~~Sy~~~~G~~L~~~~~~~~~~~~~~L~~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lps 780 (850)
||+++|+++|++||+++||++|+++...+.++.+++||+|||+||||+++ +||+|||||+|||+||||||+||++|||
T Consensus 1 pe~~~~~~~l~~SY~~~~G~~L~~~~~~~~~~~~~~L~~ap~ailsh~~~--~dP~f~yaN~aaL~l~e~~w~el~~lPs 78 (148)
T PF08670_consen 1 PEALALAQLLLQSYRRWTGRDLLPSDDSSAEELAKALWHAPFAILSHGTK--ADPIFIYANQAALDLFETTWDELVGLPS 78 (148)
T ss_pred ChHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHcCCCEEEEcCCC--CCCEEEehhHHHHHHhcCCHHHHhcCcH
Confidence 79999999999999999999999987777789999999999999999999 9999999999999999999999999999
Q ss_pred cccCChhcHHHHHHHHHHHHHhccccCCCeeEEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecCcccC
Q 003075 781 DKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMNWSFV 850 (850)
Q Consensus 781 r~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~W~~l 850 (850)
|+||||.+|+||+++|++|++|||+++|+||||||+||||+|++|+||||+|++|+++||||||.||+||
T Consensus 79 r~sae~~~r~er~~lL~~v~~qG~~~~y~GiRiss~Grrf~ie~a~vW~l~D~~g~~~GqAa~F~~W~~l 148 (148)
T PF08670_consen 79 RLSAEEPERKERQSLLAQVMQQGYIDNYSGIRISSTGRRFRIERATVWNLIDEDGNYCGQAAMFSNWSFL 148 (148)
T ss_pred hhccChhhHHHHHHHHHHHHHhCCccCCCeEEEcCCCCeEEEeceEEEEEEcCCCCEEEEEEEEeeeEeC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997
No 3
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.74 E-value=7.1e-18 Score=171.63 Aligned_cols=199 Identities=29% Similarity=0.396 Sum_probs=166.2
Q ss_pred HHHHHHHHHHHHHhcCCCCceEecCCCCCCCCcccceeccCCCcceeeeeeeEEeeChhhHHHHhcCcc-chhhcCCcce
Q 003075 168 AVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLDPTKIAEILKDCP-SWFRDCRCLD 246 (850)
Q Consensus 168 ~~A~~am~Ell~la~~~~plWi~~~g~~~g~~~~~~~~~~~~~~~eASR~~glV~m~~~~LVe~lmD~~-~W~~~f~~~~ 246 (850)
++|++++.+++++++.++..|....+.+++...+...+.+.++....-|..++|...+.++++.|+|.. +|-.++..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~Wd~~~~~~~ 80 (206)
T PF01852_consen 1 ELAEELMQEELALAQEDEDGWKLYKDKKNGDVYYKKVSPSDSCPIKMFKAEGVVPASPEQVVEDLLDDREQWDKMCVEAE 80 (206)
T ss_dssp -HHHHHHHHHHHHHHHTCTTCEEEEEETTTCEEEEEEECSSSTSCEEEEEEEEESSCHHHHHHHHHCGGGHHSTTEEEEE
T ss_pred CHHHHHHHHHHHHhhcCCCCCeEeEccCCCeEEEEEeCccccccceEEEEEEEEcCChHHHHHHHHhhHhhcccchhhhe
Confidence 589999999999999999999997533333333333332233467889999999999999999999988 9999999999
Q ss_pred eeeeccCCCccHHHHHHHhhcccccccccceeeEEeeccccCCCcEEEEEeecCCCCCCCCCCC-CCcccccccccccee
Q 003075 247 VLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPP-PSSFVRAEMLASGFL 325 (850)
Q Consensus 247 ~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~-~~~f~r~~rlPSGcl 325 (850)
+|+.++.+ ..|..++.++..++|+.| |||.++|++++.++|.++|+.+|+|... .++ .+.++|+..++||++
T Consensus 81 ~le~~~~~--~~i~~~~~~~~~~~p~~~-RDfv~~~~~~~~~~~~~~i~~~Si~~~~----~~~~~~~~VR~~~~~s~~~ 153 (206)
T PF01852_consen 81 VLEQIDED--TDIVYFVMKSPWPGPVSP-RDFVFLRSWRKDEDGTYVIVSRSIDHPQ----YPPNSKGYVRAEILISGWV 153 (206)
T ss_dssp EEEEEETT--EEEEEEEEE-CTTTTSSE-EEEEEEEEEEECTTSEEEEEEEEEEBTT----SSTT-TTSEEEEEESEEEE
T ss_pred eeeecCCC--CeEEEEEecccCCCCCCC-cEEEEEEEEEEeccceEEEEEeeecccc----ccccccCcceeeeeeEeEE
Confidence 99999875 455566677788889999 9999999999999999999999998643 233 468999999999999
Q ss_pred eeecCCCceEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHHH
Q 003075 326 IRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR 373 (850)
Q Consensus 326 Iq~~~nG~skVtwVeH~e~d~~~v~~l~Rpl~~Sg~afgar~~~~aLr 373 (850)
|++.++|.|+||+|-|+|..-+...-+++.++.+...-..+.+.++|+
T Consensus 154 i~~~~~~~~~vt~~~~~D~~G~iP~~~~n~~~~~~~~~~~~~~~~~~~ 201 (206)
T PF01852_consen 154 IRPLGDGRTRVTYVSQVDPKGWIPSWLVNMVVKSQPPNFLKNLRKALK 201 (206)
T ss_dssp EEEETTCEEEEEEEEEEESSSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEccCCCceEEEEEEECCCCCChHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999988899999999999887777777775
No 4
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.71 E-value=1.5e-16 Score=162.24 Aligned_cols=199 Identities=33% Similarity=0.488 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHhcCCCCceEecCCCCCCCCcccceeccCCCcceeeeeeeEEeeChhh-HHHHhcCc---cchhhcCCc
Q 003075 169 VAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLDPTK-IAEILKDC---PSWFRDCRC 244 (850)
Q Consensus 169 ~A~~am~Ell~la~~~~plWi~~~g~~~g~~~~~~~~~~~~~~~eASR~~glV~m~~~~-LVe~lmD~---~~W~~~f~~ 244 (850)
.|++++.|+++++...+..|....+.+.|..++.... ..+..+.+-|..++|...+.+ +.++|+|. .+|-..|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~~~~~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~ 80 (206)
T smart00234 2 VAEEAAAELLKMAAASEPGWVLSSENENGDEVRSILS-PGRSPGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAK 80 (206)
T ss_pred hHHHHHHHHHHHhhCCCCccEEccccCCcceEEEEcc-CCCCceEEEEEEEEEecChHHHHHHHHhcccchhhCchhccc
Confidence 4688999999999999999999765455555443321 112356899999999999997 66788787 789999999
Q ss_pred ceeeeeccCCCccHHHHHHHhhcccccccccceeeEEeeccccCCCcEEEEEeecCCCCCCCCCCCCCccccccccccce
Q 003075 245 LDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGF 324 (850)
Q Consensus 245 ~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~f~r~~rlPSGc 324 (850)
.++|+.++.+. .++|.-+..+-++++.|||.++|++++.++|.|+|+..|++.. ..|+...++|+..++||+
T Consensus 81 ~~~ie~~~~~~----~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~----~~p~~~~~VR~~~~~~~~ 152 (206)
T smart00234 81 AETLEVIDNGT----VIYHYVSKFVAGPVSPRDFVFVRYWRELVDGSYAVVDVSVTHP----TSPPTSGYVRAENLPSGL 152 (206)
T ss_pred EEEEEEECCCC----eEEEEEEecccCcCCCCeEEEEEEEEEcCCCcEEEEEEECCCC----CCCCCCCceEEEEeceEE
Confidence 99999887642 2233222233213566999999999999999999999999853 344556899999999999
Q ss_pred eeeecCCCceEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHHH-HHH
Q 003075 325 LIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR-HIR 376 (850)
Q Consensus 325 lIq~~~nG~skVtwVeH~e~d~~~v~~l~Rpl~~Sg~afgar~~~~aLr-~~e 376 (850)
+|+++++|.|+|||+-|+|..-+..+-+.+.++.++.....+.+.++++ +|+
T Consensus 153 ~i~p~~~~~t~vt~~~~~D~~G~iP~~lvn~~~~~~~~~~~~~~~~~~~~~~~ 205 (206)
T smart00234 153 LIEPLGNGPSKVTWVSHADLKGWLPHWLVRSLIKSGLAEFAKTWVATLQKHCA 205 (206)
T ss_pred EEEECCCCCeEEEEEEEEecCCCccceeehhhhhhhHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999977889999999999899999999885 665
No 5
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=99.69 E-value=4.9e-17 Score=166.39 Aligned_cols=114 Identities=33% Similarity=0.475 Sum_probs=100.3
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHh
Q 003075 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAM 95 (850)
Q Consensus 16 ~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq~~~~l~~~n~~l~ae 95 (850)
..++++.|+|.+|+..||+.|+...+..+.++.+||++| ||.++||+|||||||||||.++.+. +.+.|+.+
T Consensus 49 ~~~~kk~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~L----gL~pRQVavWFQNRRARwK~kqlE~----d~~~Lk~~ 120 (198)
T KOG0483|consen 49 KGKGKKRRLTSEQVKFLEKSFESEKKLEPERKKKLAKEL----GLQPRQVAVWFQNRRARWKTKQLEK----DYESLKRQ 120 (198)
T ss_pred ccccccccccHHHHHHhHHhhccccccChHHHHHHHHhh----CCChhHHHHHHhhccccccchhhhh----hHHHHHHH
Confidence 457888899999999999999999999999999999999 9999999999999999999988874 45569999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCC--CccCCCCCc
Q 003075 96 NKLLMEENDRLQKQVSHLVYENGYMRQQLHSAP--ATTTDNSCE 137 (850)
Q Consensus 96 n~~l~ee~~~l~~e~~~L~~En~~Lk~el~~~~--~~~~~~s~~ 137 (850)
.+.++.++++++++++.|+.|...++.+.++.. ...++++|.
T Consensus 121 ~~~l~~~~~~Lq~e~~eL~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (198)
T KOG0483|consen 121 LESLRSENDRLQSEVQELVAELSSLKREMQKSPENTLTMCPNSE 164 (198)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhhhhhhhccCcccccccCcccc
Confidence 999999999999999999999988888877732 233455565
No 6
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=99.48 E-value=3.1e-14 Score=141.44 Aligned_cols=63 Identities=30% Similarity=0.503 Sum_probs=59.3
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHHHH
Q 003075 17 DSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEAS 83 (850)
Q Consensus 17 ~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq~~~ 83 (850)
.||.||.||.+|+..||..|+.|+|....+|++||+.| +|++.||||||||||+|.||++.+.
T Consensus 102 ~kr~RT~ft~~Ql~~LE~~F~~~~Yvvg~eR~~LA~~L----~LsetQVkvWFQNRRtk~kr~~~e~ 164 (197)
T KOG0843|consen 102 PKRIRTAFTPEQLLKLEHAFEGNQYVVGAERKQLAQSL----SLSETQVKVWFQNRRTKHKRMQQED 164 (197)
T ss_pred CCccccccCHHHHHHHHHHHhcCCeeechHHHHHHHHc----CCChhHhhhhhhhhhHHHHHHHHHh
Confidence 37889999999999999999999999999999999999 9999999999999999999976553
No 7
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only]
Probab=99.47 E-value=2.8e-14 Score=152.81 Aligned_cols=62 Identities=27% Similarity=0.434 Sum_probs=58.5
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHH
Q 003075 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 81 (850)
Q Consensus 16 ~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq~ 81 (850)
..||.|+.||..|+.+||+.|+.++|.+..+|.+||..| .|+++||||||||||+||||.+.
T Consensus 158 ~~kR~RtayT~~QllELEkEFhfN~YLtR~RRiEiA~~L----~LtErQIKIWFQNRRMK~Kk~~k 219 (261)
T KOG0489|consen 158 KSKRRRTAFTRYQLLELEKEFHFNKYLTRSRRIEIAHAL----NLTERQIKIWFQNRRMKWKKENK 219 (261)
T ss_pred CCCCCCcccchhhhhhhhhhhccccccchHHHHHHHhhc----chhHHHHHHHHHHHHHHHHHhhc
Confidence 458899999999999999999999999999999999999 99999999999999999998443
No 8
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only]
Probab=99.44 E-value=7e-14 Score=152.73 Aligned_cols=64 Identities=23% Similarity=0.345 Sum_probs=59.2
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHHH
Q 003075 15 IMDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 82 (850)
Q Consensus 15 ~~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq~~ 82 (850)
+++++.|+.||..|+..||+.|++.+|.+..+|.+||+.| ||+..|||+||||||+|||+..++
T Consensus 170 kK~RksRTaFT~~Ql~~LEkrF~~QKYLS~~DR~~LA~~L----gLTdaQVKtWfQNRRtKWKrq~a~ 233 (309)
T KOG0488|consen 170 KKRRKSRTAFSDHQLFELEKRFEKQKYLSVADRIELAASL----GLTDAQVKTWFQNRRTKWKRQTAE 233 (309)
T ss_pred cccccchhhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHc----CCchhhHHHHHhhhhHHHHHHHHh
Confidence 3456778899999999999999999999999999999999 999999999999999999996554
No 9
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription]
Probab=99.43 E-value=5.6e-14 Score=151.74 Aligned_cols=66 Identities=30% Similarity=0.546 Sum_probs=59.1
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHHHHHHH
Q 003075 17 DSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQ 86 (850)
Q Consensus 17 ~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq~~~~l~ 86 (850)
+||+|.-||..|+.+||+.|+.++|.+..+|++||..| +|++.||||||||||-|.||++....+.
T Consensus 153 kRKrRVLFSqAQV~ELERRFrqQRYLSAPERE~LA~~L----rLT~TQVKIWFQNrRYK~KR~~~dk~~~ 218 (307)
T KOG0842|consen 153 KRKRRVLFSQAQVYELERRFRQQRYLSAPEREHLASSL----RLTPTQVKIWFQNRRYKTKRQQKDKALE 218 (307)
T ss_pred ccccccccchhHHHHHHHHHHhhhccccHhHHHHHHhc----CCCchheeeeeecchhhhhhhhhhhhhh
Confidence 35566779999999999999999999999999999999 9999999999999999999966654433
No 10
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription]
Probab=99.42 E-value=6.9e-14 Score=151.10 Aligned_cols=65 Identities=34% Similarity=0.508 Sum_probs=59.4
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHHHHHHH
Q 003075 18 STKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQ 86 (850)
Q Consensus 18 ~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq~~~~l~ 86 (850)
+|||..||+.|+.+||+.|-.|.|.+.+.|.+|++.| +|++|||||||||||.|+||...+.+++
T Consensus 236 RKKRcPYTK~QtlELEkEFlfN~YitkeKR~ElSr~l----NLTeRQVKIWFQNRRMK~KK~~re~r~~ 300 (308)
T KOG0487|consen 236 RKKRCPYTKHQTLELEKEFLFNMYITKEKRLELSRTL----NLTERQVKIWFQNRRMKEKKVNRENRLK 300 (308)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHhc----ccchhheeeeehhhhhHHhhhhhhhhcc
Confidence 6788899999999999999999999999999999999 9999999999999999999966544443
No 11
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]
Probab=99.40 E-value=2.3e-13 Score=140.00 Aligned_cols=68 Identities=26% Similarity=0.364 Sum_probs=61.4
Q ss_pred hhcccCCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003075 9 EFANKQIMDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 9 e~~~~~~~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq 80 (850)
+++.++++-++.||.|+.-|++.|.+.|++++|.--.+|.+||..| ||+..||||||||||.|.||..
T Consensus 114 ~~Ngk~KK~RKPRTIYSS~QLqaL~rRFQkTQYLALPERAeLAAsL----GLTQTQVKIWFQNrRSK~KKl~ 181 (245)
T KOG0850|consen 114 RPNGKGKKVRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASL----GLTQTQVKIWFQNRRSKFKKLK 181 (245)
T ss_pred ccCCCcccccCCcccccHHHHHHHHHHHhhcchhcCcHHHHHHHHh----CCchhHhhhhhhhhHHHHHHHH
Confidence 3445556668889999999999999999999999999999999999 9999999999999999999843
No 12
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=99.39 E-value=4.1e-13 Score=110.91 Aligned_cols=57 Identities=42% Similarity=0.722 Sum_probs=54.9
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003075 18 STKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (850)
Q Consensus 18 ~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 78 (850)
+++|++||.+|+..||..|..++||+..++..||.++ ||++.||+.||||||.++|+
T Consensus 1 kr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~l----~l~~~~V~~WF~nrR~k~kk 57 (57)
T PF00046_consen 1 KRKRTRFTKEQLKVLEEYFQENPYPSKEEREELAKEL----GLTERQVKNWFQNRRRKEKK 57 (57)
T ss_dssp SSSSSSSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHH----TSSHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHhccccccccccccccc----cccccccccCHHHhHHHhCc
Confidence 5788999999999999999999999999999999999 99999999999999999885
No 13
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only]
Probab=99.37 E-value=4.6e-13 Score=135.50 Aligned_cols=65 Identities=31% Similarity=0.471 Sum_probs=59.1
Q ss_pred cCCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHH
Q 003075 13 KQIMDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 81 (850)
Q Consensus 13 ~~~~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq~ 81 (850)
|++..++.|+.||..|+..||+-|++.+|.+..+|.+++..| .|++.||||||||||+|.||-|+
T Consensus 140 Khk~nRkPRtPFTtqQLlaLErkfrekqYLSiaEraefSsSL----~LTeTqVKIWFQNRRAKaKRlQe 204 (246)
T KOG0492|consen 140 KHKPNRKPRTPFTTQQLLALERKFREKQYLSIAERAEFSSSL----ELTETQVKIWFQNRRAKAKRLQE 204 (246)
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhHhhhhhHHHHHhhhhhh----hhhhhheehhhhhhhHHHHHHHH
Confidence 334457779999999999999999999999999999999999 99999999999999999998544
No 14
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription]
Probab=99.34 E-value=7.9e-13 Score=120.79 Aligned_cols=60 Identities=27% Similarity=0.557 Sum_probs=56.6
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHH
Q 003075 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 79 (850)
Q Consensus 16 ~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krk 79 (850)
+++|-|+.||..|+.+||+.|-+.+||+.-.|++||.++ .|++..|+|||||||+|.+++
T Consensus 16 KQRRIRTTFTS~QLkELErvF~ETHYPDIYTREEiA~ki----dLTEARVQVWFQNRRAKfRKQ 75 (125)
T KOG0484|consen 16 KQRRIRTTFTSAQLKELERVFAETHYPDIYTREEIALKI----DLTEARVQVWFQNRRAKFRKQ 75 (125)
T ss_pred HhhhhhhhhhHHHHHHHHHHHHhhcCCcchhHHHHHHhh----hhhHHHHHHHHHhhHHHHHHH
Confidence 456778999999999999999999999999999999999 999999999999999999873
No 15
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription]
Probab=99.33 E-value=5.7e-13 Score=139.13 Aligned_cols=56 Identities=30% Similarity=0.532 Sum_probs=53.0
Q ss_pred cccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003075 21 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 21 R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq 80 (850)
|..||..|+.+||+.|...+|....++.+||..| +|++|||||||||||+|+||.+
T Consensus 203 RvVYTDhQRLELEKEfh~SryITirRKSELA~~L----gLsERQVKIWFQNRRAKERK~n 258 (317)
T KOG0848|consen 203 RVVYTDHQRLELEKEFHTSRYITIRRKSELAATL----GLSERQVKIWFQNRRAKERKDN 258 (317)
T ss_pred eEEecchhhhhhhhhhccccceeeehhHHHHHhh----CccHhhhhHhhhhhhHHHHHHH
Confidence 5679999999999999999999999999999999 9999999999999999999843
No 16
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=99.29 E-value=2e-12 Score=134.47 Aligned_cols=59 Identities=32% Similarity=0.548 Sum_probs=56.8
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003075 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (850)
Q Consensus 16 ~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 78 (850)
.+||.|+.||.+|++.|+..|++++|..+..|++||.+| +|.+.||||||||+|+|.||
T Consensus 245 eeKRPRTAFtaeQL~RLK~EF~enRYlTEqRRQ~La~EL----gLNEsQIKIWFQNKRAKiKK 303 (342)
T KOG0493|consen 245 EEKRPRTAFTAEQLQRLKAEFQENRYLTEQRRQELAQEL----GLNESQIKIWFQNKRAKIKK 303 (342)
T ss_pred hhcCccccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHh----CcCHHHhhHHhhhhhhhhhh
Confidence 348889999999999999999999999999999999999 99999999999999999998
No 17
>KOG0485 consensus Transcription factor NKX-5.1/HMX1, contains HOX domain [Transcription]
Probab=99.28 E-value=1.8e-12 Score=132.02 Aligned_cols=59 Identities=29% Similarity=0.382 Sum_probs=55.7
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003075 18 STKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 18 ~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq 80 (850)
||.|+.|+..|+..||..|+..+|.+..+|.-||++| .|++.|||+||||||.||||+-
T Consensus 105 KktRTvFSraQV~qLEs~Fe~krYLSsaeRa~LA~sL----qLTETQVKIWFQNRRnKwKRq~ 163 (268)
T KOG0485|consen 105 KKTRTVFSRAQVFQLESTFELKRYLSSAERAGLAASL----QLTETQVKIWFQNRRNKWKRQY 163 (268)
T ss_pred ccchhhhhHHHHHHHHHHHHHHhhhhHHHHhHHHHhh----hhhhhhhhhhhhhhhHHHHHHH
Confidence 5668889999999999999999999999999999999 9999999999999999999843
No 18
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.25 E-value=4.5e-11 Score=119.08 Aligned_cols=185 Identities=24% Similarity=0.378 Sum_probs=139.4
Q ss_pred HHHHHHHHHhcCCCCceEecCCCCCCCCcccceeccCCCcceeeeeeeEEeeChhhHHHHhcC---ccchhhcCCcceee
Q 003075 172 ETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLDPTKIAEILKD---CPSWFRDCRCLDVL 248 (850)
Q Consensus 172 ~am~Ell~la~~~~plWi~~~g~~~g~~~~~~~~~~~~~~~eASR~~glV~m~~~~LVe~lmD---~~~W~~~f~~~~~l 248 (850)
++..+++.+.+.+ ..|-..... .|-..+... ..+.....-|..+.|..++.++.++|+| +.+|-..|...+++
T Consensus 2 ~~~~~~~~~~~~~-~~W~~~~~~-~~v~vy~~~--~~~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~vl 77 (193)
T cd00177 2 EAIEELLELLEEP-EGWKLVKEK-DGVKIYTKP--YEDSGLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEEFEVI 77 (193)
T ss_pred hHHHHHhhccccC-CCeEEEEEC-CcEEEEEec--CCCCCceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceEEEEE
Confidence 4667888887766 679886431 121212110 1122346889999999999999999999 67888888888888
Q ss_pred eeccCCCccHHHHHHHhhcccccccccceeeEEeeccccCCCcEEEEEeecCCCCCCCCCCCCCccccccccccceeeee
Q 003075 249 SVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRP 328 (850)
Q Consensus 249 ~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~f~r~~rlPSGclIq~ 328 (850)
..+..+ ..++|..+..|.| ++.|||.++|++.+.++|.++|+-.|+|.. ..|....++|++.++||++|++
T Consensus 78 ~~~~~~----~~i~~~~~~~p~p-~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~----~~p~~~~~vR~~~~~~~~~i~~ 148 (193)
T cd00177 78 EEIDEH----TDIIYYKTKPPWP-VSPRDFVYLRRRRKLDDGTYVIVSKSVDHD----SHPKEKGYVRAEIKLSGWIIEP 148 (193)
T ss_pred EEeCCC----eEEEEEEeeCCCc-cCCccEEEEEEEEEcCCCeEEEEEeecCCC----CCCCCCCcEEEEEEccEEEEEE
Confidence 887653 5677888899999 999999999999999999999999999863 2333447899999999999999
Q ss_pred cCCCceEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHHH
Q 003075 329 CEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR 373 (850)
Q Consensus 329 ~~nG~skVtwVeH~e~d~~~v~~l~Rpl~~Sg~afgar~~~~aLr 373 (850)
+++|.|+||++-|+|..-+... .++++.+.-+...++..++
T Consensus 149 ~~~~~~~vt~~~~~D~~g~iP~----~~~~~~~~~~~~~~~~~~~ 189 (193)
T cd00177 149 LDPGKTKVTYVLQVDPKGSIPK----SLVNSAAKKQLASFLKDLR 189 (193)
T ss_pred CCCCCEEEEEEEeeCCCCCccH----HHHHhhhhhccHHHHHHHH
Confidence 9999999999999998865433 5555555444444444443
No 19
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only]
Probab=99.25 E-value=5.1e-12 Score=131.44 Aligned_cols=58 Identities=29% Similarity=0.556 Sum_probs=54.8
Q ss_pred cccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHHH
Q 003075 21 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 82 (850)
Q Consensus 21 R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq~~ 82 (850)
|+.||..|+++||+.|++.+||+...|+.||.++ .|.+..|+|||||||+||||+...
T Consensus 145 RTiFT~~Qle~LEkaFkeaHYPDv~Are~la~kt----elpEDRIqVWfQNRRAKWRk~Ek~ 202 (332)
T KOG0494|consen 145 RTIFTSYQLEELEKAFKEAHYPDVYAREMLADKT----ELPEDRIQVWFQNRRAKWRKTEKR 202 (332)
T ss_pred cchhhHHHHHHHHHHHhhccCccHHHHHHHhhhc----cCchhhhhHHhhhhhHHhhhhhhh
Confidence 6779999999999999999999999999999999 999999999999999999985543
No 20
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=99.22 E-value=1.1e-11 Score=123.39 Aligned_cols=66 Identities=36% Similarity=0.587 Sum_probs=60.4
Q ss_pred ccCCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHH
Q 003075 12 NKQIMDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 81 (850)
Q Consensus 12 ~~~~~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq~ 81 (850)
+.....+++|+|.|.+|+..|++.|+.+|||+...|..|+..| +|+++-|++||||||++.|++..
T Consensus 46 ~~s~~~~~~r~R~t~~Q~~vL~~~F~i~p~Ps~~~r~~L~~~l----nm~~ksVqIWFQNkR~~~k~~~~ 111 (156)
T COG5576 46 DGSSPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLL----NMPPKSVQIWFQNKRAKEKKKRS 111 (156)
T ss_pred cCCCcCcccceechHHHHHHHHHHhccCCCCCHHHHHHHHHhc----CCChhhhhhhhchHHHHHHHhcc
Confidence 3445568899999999999999999999999999999999999 99999999999999999998543
No 21
>KOG2251 consensus Homeobox transcription factor [Transcription]
Probab=99.22 E-value=8.8e-12 Score=127.95 Aligned_cols=63 Identities=24% Similarity=0.539 Sum_probs=58.9
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHH
Q 003075 15 IMDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 81 (850)
Q Consensus 15 ~~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq~ 81 (850)
.+.+|.||+||..|+++||..|.+..||+...|++||.+| +|.+.+|+|||.|||+|+|+++.
T Consensus 35 RkqRRERTtFtr~QlevLe~LF~kTqYPDv~~rEelAlkl----nLpeSrVqVWFKNRRAK~r~qq~ 97 (228)
T KOG2251|consen 35 RKQRRERTTFTRKQLEVLEALFAKTQYPDVFMREELALKL----NLPESRVQVWFKNRRAKCRRQQQ 97 (228)
T ss_pred hhcccccceecHHHHHHHHHHHHhhcCccHHHHHHHHHHh----CCchhhhhhhhccccchhhHhhh
Confidence 3457889999999999999999999999999999999999 99999999999999999998554
No 22
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=99.20 E-value=1.9e-11 Score=100.22 Aligned_cols=55 Identities=42% Similarity=0.735 Sum_probs=51.7
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHH
Q 003075 19 TKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 77 (850)
Q Consensus 19 rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~K 77 (850)
+.|++++.+|+..||..|..++||+..++.+||.++ ||+.+||+.||+|||++.|
T Consensus 2 k~r~~~~~~~~~~L~~~f~~~~~P~~~~~~~la~~~----~l~~~qV~~WF~nrR~~~~ 56 (56)
T smart00389 2 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAAKL----GLSERQVKVWFQNRRAKWK 56 (56)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH----CcCHHHHHHhHHHHhhccC
Confidence 566789999999999999999999999999999999 9999999999999998753
No 23
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=99.19 E-value=2.9e-11 Score=99.69 Aligned_cols=56 Identities=43% Similarity=0.799 Sum_probs=53.5
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003075 19 TKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (850)
Q Consensus 19 rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 78 (850)
+++..++.+|+..||..|..++||+..++..||.++ ||+++||+.||+|||.+.|+
T Consensus 2 ~~r~~~~~~~~~~Le~~f~~~~~P~~~~~~~la~~~----~l~~~qV~~WF~nrR~~~~~ 57 (59)
T cd00086 2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKEL----GLTERQVKIWFQNRRAKLKR 57 (59)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHhc
Confidence 567799999999999999999999999999999999 99999999999999999876
No 24
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only]
Probab=99.09 E-value=2e-11 Score=119.88 Aligned_cols=63 Identities=25% Similarity=0.454 Sum_probs=58.0
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHHHH
Q 003075 17 DSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEAS 83 (850)
Q Consensus 17 ~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq~~~ 83 (850)
+++-|+.|+..|+..||+.|+..+|.+..+|.+||..| +|+++|||.||||||.|.||.+++.
T Consensus 100 r~K~Rtvfs~~ql~~l~~rFe~QrYLS~~e~~ELan~L----~LS~~QVKTWFQNrRMK~Kk~~r~~ 162 (194)
T KOG0491|consen 100 RRKARTVFSDPQLSGLEKRFERQRYLSTPERQELANAL----SLSETQVKTWFQNRRMKHKKQQRNN 162 (194)
T ss_pred hhhhcccccCccccccHHHHhhhhhcccHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 35568899999999999999999999999999999999 9999999999999999999866553
No 25
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=99.09 E-value=9.1e-11 Score=98.37 Aligned_cols=52 Identities=19% Similarity=0.335 Sum_probs=50.2
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCC----CCHHHHHHHHHhCCccCCCChhhhhhhhhhhh
Q 003075 18 STKYVRYTPEQVEALERVYSECPK----PSSLRRQQLIRECPILSNIEPKQIKVWFQNRR 73 (850)
Q Consensus 18 ~rkR~r~T~~Ql~~LE~~F~~~~~----Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRR 73 (850)
+|.|+.||++|++.||.+|..++| |+...+.+||.++ ||++++|||||||.+
T Consensus 2 kR~RT~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~l----gl~~~vvKVWfqN~k 57 (58)
T TIGR01565 2 KRRRTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEI----GVTRKVFKVWMHNNK 57 (58)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHh----CCCHHHeeeecccCC
Confidence 688999999999999999999999 9999999999999 999999999999965
No 26
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=99.09 E-value=7.3e-11 Score=124.42 Aligned_cols=73 Identities=33% Similarity=0.555 Sum_probs=63.7
Q ss_pred CccchhhcccCC--------CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHH
Q 003075 4 TMHNKEFANKQI--------MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCR 75 (850)
Q Consensus 4 ~~~~~e~~~~~~--------~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak 75 (850)
+.++||.++... ..||.|+.+|..|++.|+..|+..|+|-...|++|+.+. ||+.|.|+|||||||+|
T Consensus 146 CK~DYE~Ak~k~~~~l~gd~~nKRPRTTItAKqLETLK~AYn~SpKPARHVREQLsseT----GLDMRVVQVWFQNRRAK 221 (383)
T KOG4577|consen 146 CKDDYETAKQKHCNELEGDASNKRPRTTITAKQLETLKQAYNTSPKPARHVREQLSSET----GLDMRVVQVWFQNRRAK 221 (383)
T ss_pred hhhhHHHHHhccccccccccccCCCcceeeHHHHHHHHHHhcCCCchhHHHHHHhhhcc----CcceeehhhhhhhhhHH
Confidence 345666664322 348999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHH
Q 003075 76 EKQRK 80 (850)
Q Consensus 76 ~Krkq 80 (850)
+||-+
T Consensus 222 EKRLK 226 (383)
T KOG4577|consen 222 EKRLK 226 (383)
T ss_pred HHhhh
Confidence 99833
No 27
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=99.07 E-value=2.3e-09 Score=110.91 Aligned_cols=195 Identities=22% Similarity=0.284 Sum_probs=139.2
Q ss_pred hHHHHHHHHHHHHHHhcCCCCceEecCCCCCCCCcccceeccCCCcceeeeeeeEEeeChhhHHHHh-cC---ccchhhc
Q 003075 166 LLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLDPTKIAEIL-KD---CPSWFRD 241 (850)
Q Consensus 166 l~~~A~~am~Ell~la~~~~plWi~~~g~~~g~~~~~~~~~~~~~~~eASR~~glV~m~~~~LVe~l-mD---~~~W~~~ 241 (850)
...++++|++|++.+.. ++-|-.....+.|--.+.. .. .+ .+-.-|..++|...+..+.+.| .| +.+|-..
T Consensus 6 y~~~~~~~~~~~~~~~~--~~~W~l~~~~~~~i~i~~r-~~-~~-~~~~~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~ 80 (208)
T cd08868 6 YLKQGAEALARAWSILT--DPGWKLEKNTTWGDVVYSR-NV-PG-VGKVFRLTGVLDCPAEFLYNELVLNVESLPSWNPT 80 (208)
T ss_pred HHHHHHHHHHHHHHHhc--CCCceEEEecCCCCEEEEE-Ec-CC-CceEEEEEEEEcCCHHHHHHHHHcCccccceecCc
Confidence 36788999999999955 5589885432112111111 11 12 2356899999999999997654 44 5889999
Q ss_pred CCcceeeeeccCCCccHHHHHHHhhccc-ccccccceeeEEeeccccCCCcEEEEEeecCCCCCCCCCCCCCcccccccc
Q 003075 242 CRCLDVLSVIPTGNGGTIELIYMQTYAP-TTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEML 320 (850)
Q Consensus 242 f~~~~~l~~~~~g~~G~lqLm~aE~~v~-SPLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~f~r~~rl 320 (850)
|-..++|+.+... ..++|.-+.-+ .++|..|||.++|+.++.+ |.++|+..|++. +..|+...++|+..+
T Consensus 81 ~~~~~~i~~~d~~----~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h----~~~P~~~g~VR~~~~ 151 (208)
T cd08868 81 VLECKIIQVIDDN----TDISYQVAAEAGGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEH----PAMPPTKNYVRGENG 151 (208)
T ss_pred ccceEEEEEecCC----cEEEEEEecCcCCCcccccceEEEEEEEecC-CeEEEEEEeccC----CCCCCCCCeEEEecc
Confidence 9988898887632 22333222222 2589999999999999866 779999999863 334566789999999
Q ss_pred ccceeeeecCC--CceEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHHH-HHHhh
Q 003075 321 ASGFLIRPCEG--GGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR-HIRQI 378 (850)
Q Consensus 321 PSGclIq~~~n--G~skVtwVeH~e~d~~~v~~l~Rpl~~Sg~afgar~~~~aLr-~~e~l 378 (850)
++|++|+++++ +.|+|||+-|+|..-+ +|. -++++.+.-+.-.++..|| +|+.|
T Consensus 152 ~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~-iP~---~lvN~~~~~~~~~~~~~Lr~~~~~~ 208 (208)
T cd08868 152 PGCWILRPLPNNPNKCNFTWLLNTDLKGW-LPQ---YLVDQALASVLLDFMKHLRKRIATL 208 (208)
T ss_pred ccEEEEEECCCCCCceEEEEEEEECCCCC-Ccc---eeeehhhHHHHHHHHHHHHHHHhhC
Confidence 99999999987 6899999999998755 443 3366666666777888886 77653
No 28
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=99.06 E-value=7.9e-11 Score=120.13 Aligned_cols=68 Identities=31% Similarity=0.451 Sum_probs=60.6
Q ss_pred ccCCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHHHH
Q 003075 12 NKQIMDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEAS 83 (850)
Q Consensus 12 ~~~~~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq~~~ 83 (850)
++.++++..|..|+..|+..||+.|+..+|+-...|.+||..+ |+.+.||||||||||+|||||...+
T Consensus 162 ~kdG~rk~srPTf~g~qi~~le~~feqtkylaG~~ra~lA~~l----gmteSqvkVWFQNRRTKWRKkhAaE 229 (288)
T KOG0847|consen 162 NLNGQRKQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQEL----NMTESQVKVWFQNRRTKWRKKHAAE 229 (288)
T ss_pred CcCccccccCCCccchhhhhhhhhhhhhhcccchhHHHhhccc----cccHHHHHHHHhcchhhhhhhhccc
Confidence 3444556667789999999999999999999999999999999 9999999999999999999977543
No 29
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=99.03 E-value=3.8e-09 Score=110.34 Aligned_cols=191 Identities=19% Similarity=0.293 Sum_probs=143.0
Q ss_pred HHHHHHHHHHhcCCCCceEecCCCCCCCCcccceec-cCCCcceeeeeeeEE-eeChhhHHHHhcC---ccchhhcCCcc
Q 003075 171 EETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAV-SRNCSGVAARACGLV-SLDPTKIAEILKD---CPSWFRDCRCL 245 (850)
Q Consensus 171 ~~am~Ell~la~~~~plWi~~~g~~~g~~~~~~~~~-~~~~~~eASR~~glV-~m~~~~LVe~lmD---~~~W~~~f~~~ 245 (850)
++.+++|+.++..++ -|-.... +.| +.++-. ..+...-.-|..+.+ ...+..+.+.|+| +.+|-..|-..
T Consensus 9 ~~~~~~~~~~~~~~~-~W~~~~~-~~g---i~iy~r~~~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~ 83 (222)
T cd08871 9 DADFEEFKKLCDSTD-GWKLKYN-KNN---VKVWTKNPENSSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIES 83 (222)
T ss_pred HHHHHHHHHHhcCCC-CcEEEEc-CCC---eEEEEeeCCCCceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhcee
Confidence 789999999997544 7987633 222 222211 122333466887765 5788899999999 48898888888
Q ss_pred eeeeeccCCCccHHHHHHHhhcccccccccceeeEEeeccccCCCcEEEEEeecCCCCCCCCCCCCCcccccccccccee
Q 003075 246 DVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFL 325 (850)
Q Consensus 246 ~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~f~r~~rlPSGcl 325 (850)
++|+.+..+ ..++|..+..|-| |..|||.++|..+..+ |..+|+..|++. +..|+...++|.....+|++
T Consensus 84 ~~ie~~d~~----~~i~y~~~~~P~p-vs~RDfV~~r~~~~~~-~~~vi~~~sv~~----~~~P~~~g~VR~~~~~~g~~ 153 (222)
T cd08871 84 FDICQLNPN----NDIGYYSAKCPKP-LKNRDFVNLRSWLEFG-GEYIIFNHSVKH----KKYPPRKGFVRAISLLTGYL 153 (222)
T ss_pred EEEEEcCCC----CEEEEEEeECCCC-CCCCeEEEEEEEEeCC-CEEEEEeccccC----CCCCCCCCeEEeEEEccEEE
Confidence 888877543 3567777888888 8999999999998776 888999999974 33455668999999999999
Q ss_pred eeecCCCceEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHHH-HHHhhhh
Q 003075 326 IRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR-HIRQIAQ 380 (850)
Q Consensus 326 Iq~~~nG~skVtwVeH~e~d~~~v~~l~Rpl~~Sg~afgar~~~~aLr-~~e~la~ 380 (850)
|+++++|.|+|||+-|+|..-+ +|. -+++..+.-+.-.++..|| .|+....
T Consensus 154 i~p~~~~~t~vt~~~~~Dp~G~-IP~---~lvN~~~~~~~~~~l~~l~k~~~~y~~ 205 (222)
T cd08871 154 IRPTGPKGCTLTYVTQNDPKGS-LPK---WVVNKATTKLAPKVMKKLHKAALKYPE 205 (222)
T ss_pred EEECCCCCEEEEEEEecCCCCC-cCH---HHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999999999999999998765 552 3555555556667888885 6776553
No 30
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=99.00 E-value=6.7e-09 Score=107.33 Aligned_cols=190 Identities=22% Similarity=0.287 Sum_probs=138.4
Q ss_pred hHHHHHHHHHHHHHHhcCCCCceEecCCCCCCCCcccceeccCCCcceeeeeeeEEeeChhhHHHHhcC-----ccchhh
Q 003075 166 LLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLDPTKIAEILKD-----CPSWFR 240 (850)
Q Consensus 166 l~~~A~~am~Ell~la~~~~plWi~~~g~~~g~~~~~~~~~~~~~~~eASR~~glV~m~~~~LVe~lmD-----~~~W~~ 240 (850)
+-.++++|.+|++.... .+.-|-.... +.|-..+-. + ..++.+-.-|..|.+..++.++++.|+| +.+|..
T Consensus 3 ~~~~~~~~~~~~~~~~~-~~~~W~~~~~-~~~i~v~~~-~-~~~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~ 78 (206)
T cd08867 3 FKVIAEKLANEALQYIN-DTDGWKVLKT-VKNITVSWK-P-STEFTGHLYRAEGIVDALPEKVIDVIIPPCGGLRLKWDK 78 (206)
T ss_pred HHHHHHHHHHHHHHHhc-CcCCcEEEEc-CCCcEEEEe-c-CCCCCCEEEEEEEEEcCCHHHHHHHHHhcCccccccccc
Confidence 35689999999999987 4477988642 122111110 1 1222223469999999999999999998 578999
Q ss_pred cCCcceeeeeccCCCccHHHHHHHhhccc---ccccccceeeEEeeccccCCCcEEEEEeecCCCCCCCCCCCCCccccc
Q 003075 241 DCRCLDVLSVIPTGNGGTIELIYMQTYAP---TTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRA 317 (850)
Q Consensus 241 ~f~~~~~l~~~~~g~~G~lqLm~aE~~v~---SPLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~f~r~ 317 (850)
.|-..++|+.+..+ + .++|. ..+ .++|.+|||..+||.++.++|.++|+-.|++. |..|+.+.++|+
T Consensus 79 ~~~~~~~le~id~~---~-~i~~~--~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~h----p~~p~~~~~VR~ 148 (206)
T cd08867 79 SLKHYEVLEKISED---L-CVGRT--ITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDI----PERPPTPGFVRG 148 (206)
T ss_pred cccceEEEEEeCCC---e-EEEEE--EccccccCccCCcceEEEEEEEEeCCCeEEEEEEeccC----CCCCCCCCcEEE
Confidence 99888888887532 2 22332 233 34799999999999999999999999999874 335566789999
Q ss_pred cccccceeeeecC--CCceEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHHH
Q 003075 318 EMLASGFLIRPCE--GGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR 373 (850)
Q Consensus 318 ~rlPSGclIq~~~--nG~skVtwVeH~e~d~~~v~~l~Rpl~~Sg~afgar~~~~aLr 373 (850)
...++|++|++.+ ++.|+|||+-|+|..- .+| +-++++.++=+.--|+..||
T Consensus 149 ~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG-~iP---~~lvn~~~~~~~~~~~~~lr 202 (206)
T cd08867 149 YNHPCGYFCSPLKGSPDKSFLVLYVQTDLRG-MIP---QSLVESAMPSNLVNFYTDLV 202 (206)
T ss_pred EeecCEEEEEECCCCCCceEEEEEEEeccCC-CCc---HHHHHhhhhhhHHHHHHHHH
Confidence 9999999999886 5789999999999874 344 35565555555555666665
No 31
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription]
Probab=98.98 E-value=2e-10 Score=126.92 Aligned_cols=59 Identities=29% Similarity=0.474 Sum_probs=56.6
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003075 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (850)
Q Consensus 16 ~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 78 (850)
.+||||+.++...+..||++|.+|++|+..++.+||.+| +|++..|+|||+|||.|+||
T Consensus 293 RkRKKRTSie~~vr~aLE~~F~~npKPt~qEIt~iA~~L----~leKEVVRVWFCNRRQkeKR 351 (398)
T KOG3802|consen 293 RKRKKRTSIEVNVRGALEKHFLKNPKPTSQEITHIAESL----QLEKEVVRVWFCNRRQKEKR 351 (398)
T ss_pred cccccccceeHHHHHHHHHHHHhCCCCCHHHHHHHHHHh----ccccceEEEEeecccccccc
Confidence 457889999999999999999999999999999999999 99999999999999999998
No 32
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=98.98 E-value=6.3e-09 Score=108.14 Aligned_cols=168 Identities=20% Similarity=0.267 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEecCCCCCCCCcccceec-cCCCcceeeeeeeEEeeChhhHHHHhcCcc---chhhcC
Q 003075 167 LAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAV-SRNCSGVAARACGLVSLDPTKIAEILKDCP---SWFRDC 242 (850)
Q Consensus 167 ~~~A~~am~Ell~la~~~~plWi~~~g~~~g~~~~~~~~~-~~~~~~eASR~~glV~m~~~~LVe~lmD~~---~W~~~f 242 (850)
..++++|++|++++-. ..-.|-... .+.+ +.+... .+.+.+---|..|+|..++.+|+|.+-|.+ +|-..|
T Consensus 4 ~~~~~~~~~~~l~~~~-~~~gWk~~k---~~~~-~~v~~k~~~~~~gkl~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~ 78 (204)
T cd08904 4 KKIAQETSQEVLGYSR-DTSGWKVVK---TSKK-ITVSWKPSRKYHGNLYRVEGIIPESPAKLIQFMYQPEHRIKWDKSL 78 (204)
T ss_pred HHHHHHHHHHHHhhhh-cccCCeEEe---cCCc-eEEEEEEcCCCCceEEEEEEEecCCHHHHHHHHhccchhhhhcccc
Confidence 5789999999999987 557887742 2211 222221 234455677999999999999999998865 455555
Q ss_pred CcceeeeeccCCCccHHHHHHHhhc-ccccccccceeeEEeeccccCCCcEEEEEeecCCCCCCCCCCCCCccccccccc
Q 003075 243 RCLDVLSVIPTGNGGTIELIYMQTY-APTTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLA 321 (850)
Q Consensus 243 ~~~~~l~~~~~g~~G~lqLm~aE~~-v~SPLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~f~r~~rlP 321 (850)
-..++|+.+.... .+.|..++ .+-++|-+|||..+||.++.++|.++|+..|++. |..|+...|+|++..|
T Consensus 79 ~~~~iie~Id~~T----~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~H----p~~Pp~~g~VRa~n~~ 150 (204)
T cd08904 79 QVYKMLQRIDSDT----FICHTITQSFAMGSISPRDFVDLVHIKRYEGNMNIVSSVSVEY----PQCPPSSNYIRGYNHP 150 (204)
T ss_pred cceeeEEEeCCCc----EEEEEecccccCCcccCceEEEEEEEEEeCCCEEEEEEEeccc----CCCCCCCCcEEEeeec
Confidence 5557777665432 23332222 3457899999999999999999999999999963 4567778999999999
Q ss_pred cceeeeecCCC--ceEEEEEEeeeccCC
Q 003075 322 SGFLIRPCEGG--GSIIHIVDHVDLDAW 347 (850)
Q Consensus 322 SGclIq~~~nG--~skVtwVeH~e~d~~ 347 (850)
+||+|+|.+++ +|++||+-++|+.-+
T Consensus 151 ~G~~i~pl~~~p~~t~l~~~~~~DlkG~ 178 (204)
T cd08904 151 CGYVCSPLPENPAYSKLVMFVQPELRGN 178 (204)
T ss_pred cEEEEEECCCCCCceEEEEEEEeCCCCC
Confidence 99999999875 899999999887744
No 33
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription]
Probab=98.97 E-value=1.7e-10 Score=122.41 Aligned_cols=60 Identities=33% Similarity=0.491 Sum_probs=55.9
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHH
Q 003075 18 STKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 81 (850)
Q Consensus 18 ~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq~ 81 (850)
+|=|+.||.+||..||+.|-+..|.+..+|.+||..| ||++..|||||||||.|+||+..
T Consensus 182 RRYRTAFTReQIaRLEKEFyrENYVSRprRcELAAaL----NLPEtTIKVWFQNRRMKDKRQRl 241 (408)
T KOG0844|consen 182 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAAL----NLPETTIKVWFQNRRMKDKRQRL 241 (408)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhccccCchhhhHHHhh----CCCcceeehhhhhchhhhhhhhh
Confidence 5567889999999999999999999999999999999 99999999999999999998554
No 34
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription]
Probab=98.93 E-value=6e-10 Score=119.26 Aligned_cols=63 Identities=22% Similarity=0.489 Sum_probs=58.5
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHHH
Q 003075 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 82 (850)
Q Consensus 16 ~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq~~ 82 (850)
+++|.|+.||..|+++||..|+++.||+...|++||--. +|++..|+|||.|||+||+|++.+
T Consensus 111 KqrrQrthFtSqqlqele~tF~rNrypdMstrEEIavwt----NlTE~rvrvwfknrrakwrkrErN 173 (351)
T KOG0486|consen 111 KQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWT----NLTEARVRVWFKNRRAKWRKRERN 173 (351)
T ss_pred hhhhhhhhhHHHHHHHHHHHHhhccCCccchhhHHHhhc----cccchhhhhhcccchhhhhhhhhh
Confidence 446678889999999999999999999999999999999 999999999999999999996654
No 35
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=98.81 E-value=6.4e-08 Score=100.66 Aligned_cols=188 Identities=18% Similarity=0.259 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEecCCCCCCCCcccceec-cCCCcceeeeeeeEEeeChhhHHHHhcCc-----cchhh
Q 003075 167 LAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAV-SRNCSGVAARACGLVSLDPTKIAEILKDC-----PSWFR 240 (850)
Q Consensus 167 ~~~A~~am~Ell~la~~~~plWi~~~g~~~g~~~~~~~~~-~~~~~~eASR~~glV~m~~~~LVe~lmD~-----~~W~~ 240 (850)
.+++++|+++++.+-+ .+..|-..... .| +.++-. .+...+-.-|.-|+|..++.+|++.|+|. .+|-.
T Consensus 4 ~~~~~~~~~~~l~~~~-~~~~W~~~~~~-~~---i~v~~~~~~~~~~~~~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~ 78 (208)
T cd08903 4 AELAESVADKMLLYRR-DESGWKTCRRT-NE---VAVSWRPSAEFAGNLYKGEGIVYATLEQVWDCLKPAAGGLRVKWDQ 78 (208)
T ss_pred HHHHHHHHHHHHhhhc-cccCCEEEEcC-CC---EEEEeeecCCCCCcEEEEEEEecCCHHHHHHHHHhccchhhhhhhh
Confidence 5789999999999875 66789875321 12 222211 11222223699999999999999999965 69999
Q ss_pred cCCcceeeeeccCCCccHHHHHHHhhccccc---ccccceeeEEeeccccCCCcEEEEEeecCCCCCCCCCCCCCccccc
Q 003075 241 DCRCLDVLSVIPTGNGGTIELIYMQTYAPTT---LAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRA 317 (850)
Q Consensus 241 ~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SP---Lvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~f~r~ 317 (850)
.|-..++|+.+.... .+.|. ..|.| +|.+|||..+|+.++.++|.++|.-.|+.. +..|+.+.|+|+
T Consensus 79 ~~~~~~vle~id~~~----~i~~~--~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h----~~~P~~~~~VR~ 148 (208)
T cd08903 79 NVKDFEVVEAISDDV----SVCRT--VTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEH----PLCPPQAGFVRG 148 (208)
T ss_pred ccccEEEEEEecCCE----EEEEE--ecchhcCCCcCCCceEEEEEEEecCCceEEEeEEeccC----CCCCCCCCeEEE
Confidence 999999999887431 11221 34555 699999999999999999998877777653 445677799999
Q ss_pred cccccceeeeecCC--CceEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHHH
Q 003075 318 EMLASGFLIRPCEG--GGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR 373 (850)
Q Consensus 318 ~rlPSGclIq~~~n--G~skVtwVeH~e~d~~~v~~l~Rpl~~Sg~afgar~~~~aLr 373 (850)
+..|+|++|.+.++ +.|+|+|+-|+|.. ..+| +.++++.++=+..-++..||
T Consensus 149 ~~~~~g~~~~~~~~~~~~t~v~~~~~~Dpk-G~iP---~~lvn~~~~~~~~~~~~~Lr 202 (208)
T cd08903 149 FNHPCGCFCEPVPGEPDKTQLVSFFQTDLS-GYLP---QTVVDSFFPASMAEFYNNLT 202 (208)
T ss_pred eeeccEEEEEECCCCCCceEEEEEEEeccC-CCcC---HHHHHHHhhHHHHHHHHHHH
Confidence 99999999999954 58999999888875 3466 35554433334444555554
No 36
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=98.80 E-value=4.3e-08 Score=102.06 Aligned_cols=190 Identities=19% Similarity=0.236 Sum_probs=135.2
Q ss_pred hHHHHHHHHHHHHHHhcCCCCceEecCCCCCCCCcccceeccCCCcceeeeeeeEEeeChhhHHHHhc-C---ccchhhc
Q 003075 166 LLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLDPTKIAEILK-D---CPSWFRD 241 (850)
Q Consensus 166 l~~~A~~am~Ell~la~~~~plWi~~~g~~~g~~~~~~~~~~~~~~~eASR~~glV~m~~~~LVe~lm-D---~~~W~~~ 241 (850)
-..++++|++|++++.+ .+..|-.....+.| +.++-......+-+-|.-++|..++.+|++.|. | ..+|...
T Consensus 6 y~~~~~~~~~~~~~~~~-~~~~W~~~~~~~~g---i~v~s~~~~~~~k~~k~e~~i~~~~~~l~~~l~~d~e~~~~W~~~ 81 (209)
T cd08905 6 YIKQGEEALQKSLSILQ-DQEGWKTEIVAENG---DKVLSKVVPDIGKVFRLEVVVDQPLDNLYSELVDRMEQMGEWNPN 81 (209)
T ss_pred HHHHHHHHHHHHHHHhc-cccCCEEEEecCCC---CEEEEEEcCCCCcEEEEEEEecCCHHHHHHHHHhchhhhceeccc
Confidence 35789999999999986 55689875211222 222211111112677889999999999995555 4 3789988
Q ss_pred CCcceeeeeccCCCccHHHHHHHhhccccc--ccccceeeEEeeccccCCCcEEEEEeecCCCCCCCCCCCCCccccccc
Q 003075 242 CRCLDVLSVIPTGNGGTIELIYMQTYAPTT--LAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEM 319 (850)
Q Consensus 242 f~~~~~l~~~~~g~~G~lqLm~aE~~v~SP--Lvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~f~r~~r 319 (850)
|-.+++|+.+... + -++|. ..+|.| +|..|||..+|+.++.+++. +++..|.+. +..|+...++|++.
T Consensus 82 ~~~~~vl~~id~~---~-~i~y~-~~~p~p~~~vs~RD~V~~~~~~~~~~~~-~~~~~s~~~----~~~P~~~~~VR~~~ 151 (209)
T cd08905 82 VKEVKILQRIGKD---T-LITHE-VAAETAGNVVGPRDFVSVRCAKRRGSTC-VLAGMATHF----GLMPEQKGFIRAEN 151 (209)
T ss_pred chHHHHHhhcCCC---c-eEEEE-EeccCCCCccCccceEEEEEEEEcCCcE-EEEEEeecC----CCCCCCCCeEEEEe
Confidence 8888877776642 1 23443 556655 79999999999999886554 566677653 34566678999999
Q ss_pred cccceeeeecCC--CceEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHHH
Q 003075 320 LASGFLIRPCEG--GGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR 373 (850)
Q Consensus 320 lPSGclIq~~~n--G~skVtwVeH~e~d~~~v~~l~Rpl~~Sg~afgar~~~~aLr 373 (850)
.++|++|+++++ |.|+|||+-|+|..-+ +| ..++++.++=+.--++..||
T Consensus 152 ~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~-iP---~~lvN~~~~~~~~~~~~~Lr 203 (209)
T cd08905 152 GPTCIVLRPLAGDPSKTKLTWLLSIDLKGW-LP---KSIINQVLSQTQVDFANHLR 203 (209)
T ss_pred eccEEEEEECCCCCCceEEEEEEeecCCCC-CC---HHHHHHHhHHhHHHHHHHHH
Confidence 999999999988 9999999999998765 55 35565555555556666665
No 37
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=98.60 E-value=1.3e-07 Score=112.00 Aligned_cols=129 Identities=25% Similarity=0.374 Sum_probs=105.9
Q ss_pred eeeeeeeEEeeChhhHHHHhcCcc----chhhcCCcceeeeeccCCCccHHHHHHHhh--cccccccccceeeEEeeccc
Q 003075 213 VAARACGLVSLDPTKIAEILKDCP----SWFRDCRCLDVLSVIPTGNGGTIELIYMQT--YAPTTLAAARDFWLLRYSTS 286 (850)
Q Consensus 213 eASR~~glV~m~~~~LVe~lmD~~----~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~--~v~SPLvp~Re~~fLRyckq 286 (850)
-+=|+.|+|...+.+|.|.+|+.+ +|=..|-..++|+.+.. ...++|.-+ -.+...+-+|||+++||-+.
T Consensus 227 ~~mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~ID~----htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr 302 (719)
T PLN00188 227 RAMKAVGVVEATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEVDG----HTAILYHRLQLDWFPMFVWPRDLCYVRYWRR 302 (719)
T ss_pred ceeEEEEEecCCHHHHHHHHhccCcccccchhcccceEEEEEecC----CeEEEEEEeccccccCccCcceeEEEEEEEE
Confidence 567889999999999999999766 88888888888887743 333444333 23445677799999999999
Q ss_pred cCCCcEEEEEeecCCCCCCCCCCCCCccccccccccceeeeecC--C--CceEEEEEEeeeccCCCc
Q 003075 287 LEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCE--G--GGSIIHIVDHVDLDAWSV 349 (850)
Q Consensus 287 ~~~G~waVvDvSld~~~~~~~~~~~~~f~r~~rlPSGclIq~~~--n--G~skVtwVeH~e~d~~~v 349 (850)
.+||+++|+=+|+.. +.-|+...|+|++..|+||+|.|++ + -.|.|+|+-|+|..-|..
T Consensus 303 ~eDGsYvil~~Sv~H----p~cPP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkGW~~ 365 (719)
T PLN00188 303 NDDGSYVVLFRSREH----ENCGPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGV 365 (719)
T ss_pred cCCCcEEEeeeeeec----CCCCCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCcccc
Confidence 999999999999874 4456778999999999999999964 3 379999999999999975
No 38
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=98.58 E-value=2.8e-08 Score=103.40 Aligned_cols=61 Identities=25% Similarity=0.451 Sum_probs=57.0
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003075 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 16 ~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq 80 (850)
..++.|+.|+..|+++||+.|++.+||+...|+.|+..+ ++++..|++||||||+|+++++
T Consensus 59 ~~rr~rt~~~~~ql~~ler~f~~~h~Pd~~~r~~la~~~----~~~e~rVqvwFqnrrak~r~~~ 119 (235)
T KOG0490|consen 59 SKRCARCKFTISQLDELERAFEKVHLPCFACRECLALLL----TGDEFRVQVWFQNRRAKDRKEE 119 (235)
T ss_pred cccccCCCCCcCHHHHHHHhhcCCCcCccchHHHHhhcC----CCCeeeeehhhhhhcHhhhhhh
Confidence 347788999999999999999999999999999999999 9999999999999999999844
No 39
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=98.58 E-value=2.9e-07 Score=94.99 Aligned_cols=166 Identities=25% Similarity=0.348 Sum_probs=124.6
Q ss_pred HHHHHHHHHHhcCCCCceEecCCCCCCCCcccce--eccCCCcceeeeeeeEEeeChhhHHHHhcC-ccchhhcCCccee
Q 003075 171 EETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIV--AVSRNCSGVAARACGLVSLDPTKIAEILKD-CPSWFRDCRCLDV 247 (850)
Q Consensus 171 ~~am~Ell~la~~~~plWi~~~g~~~g~~~~~~~--~~~~~~~~eASR~~glV~m~~~~LVe~lmD-~~~W~~~f~~~~~ 247 (850)
+.+.++||+-+...+.-|.-.... .| +.+. +...++...+=|..+.|...+.++++.++| +.+|-..|-..++
T Consensus 4 ~~~~~~ll~~~~~~~~~W~~~~~~-~g---i~I~~k~~~~~~~l~~~K~~~~v~a~~~~v~~~l~d~r~~Wd~~~~~~~v 79 (197)
T cd08869 4 ERCVQDLLREARDKSKGWVSVSSS-DH---VELAFKKVDDGHPLRLWRASTEVEAPPEEVLQRILRERHLWDDDLLQWKV 79 (197)
T ss_pred HHHHHHHHHHHhhccCCceEEecC-Cc---EEEEEEeCCCCCcEEEEEEEEEeCCCHHHHHHHHHHHHhccchhhheEEE
Confidence 577899999999889999875331 22 2222 222334456779999999999999886665 5678888888888
Q ss_pred eeeccCCCccHHHHHHHhhcccccccccceeeEEeeccc-cCCCcEEEEEeecCCCCCCCCCCCCCccccccccccceee
Q 003075 248 LSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTS-LEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFLI 326 (850)
Q Consensus 248 l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq-~~~G~waVvDvSld~~~~~~~~~~~~~f~r~~rlPSGclI 326 (850)
|+.+... ..+.|..+..|-| +++|||..+|+++. .++|..+|.=.|++... ..|+ .++|++.+++|++|
T Consensus 80 ie~id~~----~~i~y~~~~~p~p-v~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~---~~p~--g~VR~~~~~~g~~i 149 (197)
T cd08869 80 VETLDED----TEVYQYVTNSMAP-HPTRDYVVLRTWRTDLPKGACVLVETSVEHTE---PVPL--GGVRAVVLASRYLI 149 (197)
T ss_pred EEEecCC----cEEEEEEeeCCCC-CCCceEEEEEEEEecCCCCcEEEEEECCcCCC---CCCC--CCEEEEEEeeeEEE
Confidence 8887642 2345555666766 59999999999874 78899999999986421 1222 89999999999999
Q ss_pred eecCCCceEEEEEEeeeccCCCccc
Q 003075 327 RPCEGGGSIIHIVDHVDLDAWSVPE 351 (850)
Q Consensus 327 q~~~nG~skVtwVeH~e~d~~~v~~ 351 (850)
++..+|.|+||++-|+|..- .+|.
T Consensus 150 ~p~~~~~t~vty~~~~Dp~G-~iP~ 173 (197)
T cd08869 150 EPCGSGKSRVTHICRVDLRG-RSPE 173 (197)
T ss_pred EECCCCCeEEEEEEEECCCC-CCCc
Confidence 99999999999999998743 4554
No 40
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=98.58 E-value=8.4e-07 Score=92.57 Aligned_cols=190 Identities=19% Similarity=0.211 Sum_probs=130.1
Q ss_pred hHHHHHHHHHHHHHHhcCCCCceEecCCCCCCCCcccceeccCCCcceeeeeeeEEeeChhhHH-HHhcCc---cchhhc
Q 003075 166 LLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLDPTKIA-EILKDC---PSWFRD 241 (850)
Q Consensus 166 l~~~A~~am~Ell~la~~~~plWi~~~g~~~g~~~~~~~~~~~~~~~eASR~~glV~m~~~~LV-e~lmD~---~~W~~~ 241 (850)
....+++||+++.++... +..|.-....+.| +.++-......+-+=|.-+.|...+..|. +.|.|. .+|-..
T Consensus 6 ~~~~~~~~~~~~~~~l~~-~~~W~l~~~~~~g---i~V~s~~~~~~~~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~~ 81 (209)
T cd08906 6 YVRQGKEALAVVEQILAQ-EENWKFEKNNDNG---DTVYTLEVPFHGKTFILKAFMQCPAELVYQEVILQPEKMVLWNKT 81 (209)
T ss_pred HHHHHHHHHHHHHHHhhc-ccCCEEEEecCCC---CEEEEeccCCCCcEEEEEEEEcCCHHHHHHHHHhChhhccccCcc
Confidence 456789999999999775 3479853211223 22221111111233488888888888885 677775 577777
Q ss_pred CCcceeeeeccCCCccHHHHHHHhhccccc--ccccceeeEEeeccccCCCcEEEEEeecCCCCCCCCCCCCCccccccc
Q 003075 242 CRCLDVLSVIPTGNGGTIELIYMQTYAPTT--LAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEM 319 (850)
Q Consensus 242 f~~~~~l~~~~~g~~G~lqLm~aE~~v~SP--Lvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~f~r~~r 319 (850)
+...++|+.+... . -+.| +.-.|.+ .|..|||-.+|+.++.++| ++++..|++.. ..|+...|+|.+.
T Consensus 82 ~~~~~vi~~~~~~---~-~i~Y-~v~~p~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~~----~~P~~~~~VR~~~ 151 (209)
T cd08906 82 VSACQVLQRVDDN---T-LVSY-DVAAGAAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTHS----HKPPLSKYVRGEN 151 (209)
T ss_pred chhhhheeeccCC---c-EEEE-EEccccccCCCCCCceEEEEEEEecCCc-EEEEEEEEecC----CCCCCCCeEEEee
Confidence 7777787776642 1 2234 4444443 6899999999999998888 67788888742 4566779999999
Q ss_pred cccceeeeec--CCCceEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHHH
Q 003075 320 LASGFLIRPC--EGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR 373 (850)
Q Consensus 320 lPSGclIq~~--~nG~skVtwVeH~e~d~~~v~~l~Rpl~~Sg~afgar~~~~aLr 373 (850)
.++|++|++. .+|.|+|||+-|+|..- .+| +.+++..++=+.--++..||
T Consensus 152 ~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G-~lP---~~lvN~~~~~~~~~~~~~LR 203 (209)
T cd08906 152 GPGGFVVLKSASNPSVCTFIWILNTDLKG-RLP---RYLIHQSLAATMFEFASHLR 203 (209)
T ss_pred eccEEEEEECCCCCCceEEEEEEecCCCC-CCC---HHHHHHHHHHHHHHHHHHHH
Confidence 9999999985 57799999999998765 455 35666555444445555554
No 41
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=98.57 E-value=3.7e-07 Score=95.06 Aligned_cols=128 Identities=25% Similarity=0.337 Sum_probs=98.0
Q ss_pred eeeeeeeEEeeChhhH-HHHhcCccchhhcCCcceeeeeccCCCccHHHHHHHhhcccccccccceeeEEeecc-ccCCC
Q 003075 213 VAARACGLVSLDPTKI-AEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYST-SLEDG 290 (850)
Q Consensus 213 eASR~~glV~m~~~~L-Ve~lmD~~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyck-q~~~G 290 (850)
-.-|....|.-.+..+ -.++.++.+|-..|-...+|+.+... ..+.|--+.-|-|+ |.|||+.+|+-+ .+++|
T Consensus 52 k~~r~~~ei~~~p~~VL~~vl~~R~~WD~~~~~~~~ie~ld~~----tdi~~y~~~~~~P~-~~RD~v~~R~w~~~~~~G 126 (205)
T cd08909 52 RLWKVSVEVEAPPSVVLNRVLRERHLWDEDFLQWKVVETLDKQ----TEVYQYVLNCMAPH-PSRDFVVLRSWRTDLPKG 126 (205)
T ss_pred EEEEEEEEeCCCHHHHHHHHHhhHhhHHhhcceeEEEEEeCCC----cEEEEEEeecCCCC-CCCEEEEEEEEEEeCCCC
Confidence 4667777777777766 44677889999999888888877642 22233333345565 999999999976 45799
Q ss_pred cEEEEEeecCCCCCCCCCCCCCccccccccccceeeeecCCCceEEEEEEeeeccCCCccc
Q 003075 291 SLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPE 351 (850)
Q Consensus 291 ~waVvDvSld~~~~~~~~~~~~~f~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~ 351 (850)
..+|+..|++... .|+ .+++|+..+-+||+|+|+++|.|+||++-|+|..-+ +|.
T Consensus 127 ~~vi~~~Sv~H~~----~p~-~g~VRa~~~~~gylI~P~~~g~trvt~i~~vDpkG~-~P~ 181 (205)
T cd08909 127 ACSLVSVSVEHEE----APL-LGGVRAVVLDSQYLIEPCGSGKSRLTHICRVDLKGH-SPE 181 (205)
T ss_pred cEEEEEecCCCCc----CCC-CCcEEEEEEcCcEEEEECCCCCEEEEEEEEecCCCC-ChH
Confidence 9999999998643 233 378999999999999999999999999999987533 553
No 42
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription]
Probab=98.37 E-value=3.3e-07 Score=102.67 Aligned_cols=59 Identities=31% Similarity=0.666 Sum_probs=55.8
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003075 18 STKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 18 ~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq 80 (850)
+|+|+.|++.|++.||+.|+.++||+...|++||.+. ++.+..|.+||+|||+|++|..
T Consensus 177 rr~rtsft~~Q~~~le~~f~rt~yP~i~~Re~La~~i----~l~e~riqvwf~nrra~~rr~~ 235 (354)
T KOG0849|consen 177 RRNRTSFSPSQLEALEECFQRTPYPDIVGRETLAKET----GLPEPRVQVWFQNRRAKWRRQH 235 (354)
T ss_pred cccccccccchHHHHHHHhcCCCCCchhhHHHHhhhc----cCCchHHHHHHhhhhhhhhhcc
Confidence 5668899999999999999999999999999999999 9999999999999999999843
No 43
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription]
Probab=98.37 E-value=1.4e-07 Score=100.10 Aligned_cols=61 Identities=21% Similarity=0.435 Sum_probs=57.5
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003075 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 16 ~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq 80 (850)
.+||||+.+-......||.+|..+|.|+.+....||.+| .|.+..|+|||+|.|.|.||.+
T Consensus 308 ekKRKRTSIAAPEKRsLEayFavQPRPS~EkIAaIAekL----DLKKNVVRVWFCNQRQKQKRm~ 368 (385)
T KOG1168|consen 308 EKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKL----DLKKNVVRVWFCNQRQKQKRMK 368 (385)
T ss_pred ccccccccccCcccccHHHHhccCCCCchhHHHHHHHhh----hhhhceEEEEeeccHHHHHHhh
Confidence 458999999999999999999999999999999999999 9999999999999999999854
No 44
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=98.23 E-value=6.3e-06 Score=85.34 Aligned_cols=178 Identities=16% Similarity=0.227 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEecCCCCCCCCcccceeccCCCcceeeeeeeEEeeChhhHHHHhcC---ccchhhcCC
Q 003075 167 LAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLDPTKIAEILKD---CPSWFRDCR 243 (850)
Q Consensus 167 ~~~A~~am~Ell~la~~~~plWi~~~g~~~g~~~~~~~~~~~~~~~eASR~~glV~m~~~~LVe~lmD---~~~W~~~f~ 243 (850)
..+|.+.-+++++--+-++-.|-.-... +.-++-..| +.-+.+---|.-|+|.-.+..|++.+-+ +.+|=+.+-
T Consensus 4 ~~~~~~~~~~~~~y~~~~~~~Wkl~k~~--~~~~v~~k~-~~ef~gkl~R~Egvv~~~~~ev~d~v~~~~~r~~Wd~~v~ 80 (202)
T cd08902 4 ASKTTKLQNTLIQYHSILEEEWRVAKKS--KDVTVWRKP-SEEFGGYLYKAQGVVEDVYNRIVDHIRPGPYRLDWDSLMT 80 (202)
T ss_pred HHHHHHHHHHHHHhccccccCcEEEEeC--CCEEEEEec-CCcCCCceEEEEEEecCCHHHHHHHHhcccchhcccchhh
Confidence 4678888888888766689999774321 111111111 2234455678889999999999999999 559999888
Q ss_pred cceeeeeccCCCccHHHHHHHhhcccccccccceeeEEeeccccCCCcEEEEEeecCCCCCCCCCCCCCccccccccccc
Q 003075 244 CLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASG 323 (850)
Q Consensus 244 ~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~f~r~~rlPSG 323 (850)
..++|+.+..+ ++-.-|.=.-.+-++|-+|||.-+||+++-++|. ..|=||++.- .+| +.|+|++..|+|
T Consensus 81 ~~~Iie~Id~d---t~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d~~-~s~gvs~~~~----~~p--pg~VRgen~p~g 150 (202)
T cd08902 81 SMDIIEEFEEN---CCVMRYTTAGQLLNIISPREFVDFSYTTQYEDGL-LSCGVSIEYE----EAR--PNFVRGFNHPCG 150 (202)
T ss_pred heeHhhhhcCC---cEEEEEEcccCCcCccCccceEEEEEEEEeCCCe-EEEEeeecCC----CCC--CCeEeecccccE
Confidence 77777666543 1110022223566789999999999999999998 7778887742 223 389999999999
Q ss_pred eeeeecCCC--ceEEEEEEeeeccCCCccccchhhhhhhH
Q 003075 324 FLIRPCEGG--GSIIHIVDHVDLDAWSVPEVLRPLYESSK 361 (850)
Q Consensus 324 clIq~~~nG--~skVtwVeH~e~d~~~v~~l~Rpl~~Sg~ 361 (850)
|++.|.+|| .|+.||+-++|+.-+ +| +-++++.+
T Consensus 151 ~i~~Pl~~~p~k~~~t~~lq~DLkG~-LP---qsiIdq~~ 186 (202)
T cd08902 151 WFCVPLKDNPSHSLLTGYIQTDLRGM-LP---QSAVDTAM 186 (202)
T ss_pred EEEEECCCCCCceEEEEEEEecCCCC-cc---HHHHHHHh
Confidence 999999998 677889999887744 33 34454433
No 45
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=98.08 E-value=1.4e-05 Score=83.36 Aligned_cols=167 Identities=22% Similarity=0.318 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHhcCCCCceEecCCCCCCCCccccee--ccCCCcceeeeeeeEEeeChhhHHHHh-cCccchhhcCCcc
Q 003075 169 VAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVA--VSRNCSGVAARACGLVSLDPTKIAEIL-KDCPSWFRDCRCL 245 (850)
Q Consensus 169 ~A~~am~Ell~la~~~~plWi~~~g~~~g~~~~~~~~--~~~~~~~eASR~~glV~m~~~~LVe~l-mD~~~W~~~f~~~ 245 (850)
.-++.+++|++.|..----|+.... .+...+.. .+.|..--.-|....+.-.+..++..| -++.+|-..|-..
T Consensus 10 ~~~~~~~~l~~e~~~k~k~w~~~~~----~~~~el~~~k~~~gs~l~~~r~~~~i~a~~~~vl~~lld~~~~Wd~~~~e~ 85 (204)
T cd08908 10 FLQDCVDGLFKEVKEKFKGWVSYST----SEQAELSYKKVSEGPPLRLWRTTIEVPAAPEEILKRLLKEQHLWDVDLLDS 85 (204)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccCC----CCcEEEEEeccCCCCCcEEEEEEEEeCCCHHHHHHHHHhhHHHHHHHhhhe
Confidence 3467788888888755555665421 12121111 122223346677778888888887544 4567899999998
Q ss_pred eeeeeccCCCccHHHHHHHhhcccccccccceeeEEeecc-ccCCCcEEEEEeecCCCCCCCCCCCCCccccccccccce
Q 003075 246 DVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYST-SLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGF 324 (850)
Q Consensus 246 ~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyck-q~~~G~waVvDvSld~~~~~~~~~~~~~f~r~~rlPSGc 324 (850)
++|+-++... .+.|..+..|-| +|.|||.++|-.+ +.++|..+|+-.|++... .| . .++|.+.+-+|+
T Consensus 86 ~vIe~ld~~~----~I~Yy~~~~PwP-~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~----~P-~-~~VR~~~~~~~w 154 (204)
T cd08908 86 KVIEILDSQT----EIYQYVQNSMAP-HPARDYVVLRTWRTNLPKGACALLATSVDHDR----AP-V-AGVRVNVLLSRY 154 (204)
T ss_pred EeeEecCCCc----eEEEEEccCCCC-CCCcEEEEEEEEEEeCCCCeEEEEEeecCccc----CC-c-CceEEEEEeeEE
Confidence 9998887532 345666678888 7999999998766 589999999999998532 22 2 268999999999
Q ss_pred eeeecCCCceEEEEEEeeeccCCCccc
Q 003075 325 LIRPCEGGGSIIHIVDHVDLDAWSVPE 351 (850)
Q Consensus 325 lIq~~~nG~skVtwVeH~e~d~~~v~~ 351 (850)
+|+++++|.|+||.+-|+|--- .+|.
T Consensus 155 ~i~P~g~g~t~vtyi~~~DPgG-~iP~ 180 (204)
T cd08908 155 LIEPCGSGKSKLTYMCRIDLRG-HMPE 180 (204)
T ss_pred EEEECCCCcEEEEEEEEeCCCC-CCcH
Confidence 9999999999999999997542 4553
No 46
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=98.02 E-value=4.4e-06 Score=88.75 Aligned_cols=51 Identities=25% Similarity=0.533 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003075 24 YTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (850)
Q Consensus 24 ~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 78 (850)
|-..-...|..+|..++||++.++.+||+.. ||+..||-.||.|||.|+|.
T Consensus 183 FKekSR~~LrewY~~~~YPsp~eKReLA~aT----gLt~tQVsNWFKNRRQRDRa 233 (304)
T KOG0775|consen 183 FKEKSRSLLREWYLQNPYPSPREKRELAEAT----GLTITQVSNWFKNRRQRDRA 233 (304)
T ss_pred hhHhhHHHHHHHHhcCCCCChHHHHHHHHHh----CCchhhhhhhhhhhhhhhhh
Confidence 4455677999999999999999999999999 99999999999999999883
No 47
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=98.00 E-value=2.7e-05 Score=81.32 Aligned_cols=127 Identities=22% Similarity=0.290 Sum_probs=93.9
Q ss_pred eeeeeEEeeChhhHHHHhcCc---cchhhcCCcceeeeeccCCCccHHHHHHHhhcccccc-cccceeeEEeeccccCCC
Q 003075 215 ARACGLVSLDPTKIAEILKDC---PSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTL-AAARDFWLLRYSTSLEDG 290 (850)
Q Consensus 215 SR~~glV~m~~~~LVe~lmD~---~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPL-vp~Re~~fLRyckq~~~G 290 (850)
-|.-+.|...+.+|.+.|.|. .+|-.++...++|+.++... .++|.....|=|+ ++.|||..+|-....+++
T Consensus 47 ~~ge~~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~~~~d~----~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~ 122 (205)
T cd08874 47 FLGAGVIKAPLATVWKAVKDPRTRFLYDTMIKTARIHKTFTEDI----CLVYLVHETPLCLLKQPRDFCCLQVEAKEGEL 122 (205)
T ss_pred EEEEEEEcCCHHHHHHHHhCcchhhhhHHhhhheeeeeecCCCe----EEEEEEecCCCCCCCCCCeEEEEEEEEECCCc
Confidence 344568889999999999885 57888999999998766432 2333333333333 399999999955454555
Q ss_pred cEEEEEeecCCCCCCCCCCCCC-ccccccccccceeeeec---CCCceEEEEEEeeeccCCCcc
Q 003075 291 SLVVCERSLTSSTGGPTGPPPS-SFVRAEMLASGFLIRPC---EGGGSIIHIVDHVDLDAWSVP 350 (850)
Q Consensus 291 ~waVvDvSld~~~~~~~~~~~~-~f~r~~rlPSGclIq~~---~nG~skVtwVeH~e~d~~~v~ 350 (850)
. +|.=.|++. +..|+.. .++|.+.+++|++|+++ ++|.|+||.+-|+|.--..+|
T Consensus 123 ~-vi~~~SV~~----~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP 181 (205)
T cd08874 123 S-VVACQSVYD----KSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVP 181 (205)
T ss_pred E-EEEEEeccc----ccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCC
Confidence 4 466677764 3345554 79999999999999999 999999999999998755566
No 48
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=97.87 E-value=9.7e-05 Score=77.06 Aligned_cols=175 Identities=15% Similarity=0.227 Sum_probs=118.9
Q ss_pred CCCceEecCCCCCCCCcccceeccCCCcceeeeeeeEEe-eChhhHHHHhcCc---cchhhcCCcceeeeeccCCCccHH
Q 003075 184 TAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVS-LDPTKIAEILKDC---PSWFRDCRCLDVLSVIPTGNGGTI 259 (850)
Q Consensus 184 ~~plWi~~~g~~~g~~~~~~~~~~~~~~~eASR~~glV~-m~~~~LVe~lmD~---~~W~~~f~~~~~l~~~~~g~~G~l 259 (850)
+.+.|-..... .|-.++.. ...+...-.=|+.+.+. ..+..|.++|+|. .+|...+-. ++...+.| .
T Consensus 23 ~~~~W~l~~~~-~~i~Vy~r--~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~--~~~~~~~~---~- 93 (207)
T cd08910 23 DGAAWELLVES-SGISIYRL--LDEQSGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVKE--LYEKECDG---E- 93 (207)
T ss_pred CCCCeEEEEec-CCeEEEEe--ccCCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHHh--heeecCCC---C-
Confidence 45779886432 12111111 01233334678888888 7999999999995 567776543 44433332 2
Q ss_pred HHHHHhhcccccccccceeeEEeecc-ccCCC--cEEEEEeecCCCCCCCCCCCCCccccccccccceeeeecCCCceEE
Q 003075 260 ELIYMQTYAPTTLAAARDFWLLRYST-SLEDG--SLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSII 336 (850)
Q Consensus 260 qLm~aE~~v~SPLvp~Re~~fLRyck-q~~~G--~waVvDvSld~~~~~~~~~~~~~f~r~~rlPSGclIq~~~nG~skV 336 (850)
.++|..+..|-| |..||+.++|-.. .-.+| .|+|+..|.+. |..|....++|....-+|++|++..++.|+|
T Consensus 94 ~i~y~~~k~PwP-vs~RD~V~~r~~~~~~~~~~~~~iv~~~s~~~----p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i 168 (207)
T cd08910 94 TVIYWEVKYPFP-LSNRDYVYIRQRRDLDVEGRKIWVILARSTSL----PQLPEKPGVIRVKQYKQSLAIESDGKKGSKV 168 (207)
T ss_pred EEEEEEEEcCCC-CCCceEEEEEEeccccCCCCeEEEEEecCCCC----CCCCCCCCCEEEEEEEEEEEEEeCCCCceEE
Confidence 456778888999 9999999996444 33344 68888888763 3455566899999999999999998899999
Q ss_pred EEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHHH-HHH
Q 003075 337 HIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR-HIR 376 (850)
Q Consensus 337 twVeH~e~d~~~v~~l~Rpl~~Sg~afgar~~~~aLr-~~e 376 (850)
+.+-|.+-. ..+|. -+++.....+.-.++..|| .|.
T Consensus 169 ~~~~~~DPg-G~IP~---wlvN~~~~~~~~~~l~~l~ka~~ 205 (207)
T cd08910 169 FMYYFDNPG-GMIPS---WLINWAAKNGVPNFLKDMQKACQ 205 (207)
T ss_pred EEEEEeCCC-CcchH---HHHHHHHHHhhHHHHHHHHHHHh
Confidence 999999853 34652 3555555556667777776 554
No 49
>PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A ....
Probab=97.86 E-value=0.00011 Score=64.60 Aligned_cols=101 Identities=13% Similarity=0.113 Sum_probs=82.0
Q ss_pred CCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEEcCCCCeE
Q 003075 741 SDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGRAV 820 (850)
Q Consensus 741 ~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf 820 (850)
|.+|++++.+ =.++|+|.+++++|+++-+++.+.+...-..+..+.+..+.+.++.++|-...+.-.-..+.|+.+
T Consensus 1 p~~i~i~d~~----g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~ 76 (104)
T PF13426_consen 1 PDGIFILDPD----GRILYVNPAFERLFGYSREELIGKSISDFFPEEDRPEFEEQIERALEEGGSWSGEVRLRRKDGETF 76 (104)
T ss_dssp -SEEEEEETT----SBEEEE-HHHHHHHTS-HHHHTTSBGGGGCSTTSCHHHHHHHHHHHHHTSSEEEEEEEEETTSEEE
T ss_pred CEEEEEECCc----CcEEehhHHHHHHHCcCHHHHcCCCcccccCcccchhhHHHHHHHHhcCCceeEEEEEEcCCCCEE
Confidence 5666666654 689999999999999999999999998888777777777888888887776777777778999999
Q ss_pred EEcceEEeEeecCCCCeeEEEEeecC
Q 003075 821 SYEQAVAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 821 ~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
++ ...+-.+.|++|+..|..++|.|
T Consensus 77 ~~-~~~~~~i~~~~g~~~~~i~~~~D 101 (104)
T PF13426_consen 77 WV-EVSASPIRDEDGEITGIIGIFRD 101 (104)
T ss_dssp EE-EEEEEEEEETTSSEEEEEEEEEE
T ss_pred EE-EEEEEEEECCCCCEEEEEEEEEE
Confidence 88 56888999999999998888765
No 50
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=97.81 E-value=0.0002 Score=74.58 Aligned_cols=167 Identities=20% Similarity=0.293 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHhcCCCCceEecCCCCCCCCcccceeccCCCcceeeeeeeEE-eeChhhHHHHhcCccchhhcCCccee
Q 003075 169 VAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLV-SLDPTKIAEILKDCPSWFRDCRCLDV 247 (850)
Q Consensus 169 ~A~~am~Ell~la~~~~plWi~~~g~~~g~~~~~~~~~~~~~~~eASR~~glV-~m~~~~LVe~lmD~~~W~~~f~~~~~ 247 (850)
.-++.+++|++.++...--|+...+ +.+-+.. ....+.|..---=|.+.-| ...+.-|-++|.|+..|=+.+-...+
T Consensus 10 ~l~~~~~~~lre~~ek~kgW~~~~~-~~~vev~-~kk~~d~~~l~lwk~s~ei~~~p~~vl~rvL~dR~~WD~~m~e~~~ 87 (205)
T cd08907 10 YLEDNVQCLLREASERFKGWHSAPG-PDNTELA-CKKVGDGHPLRLWKVSTEVEAPPSVVLQRVLRERHLWDEDLLHSQV 87 (205)
T ss_pred HHHHHHHHHHHHhhhccCCceeecC-CCCcEEE-EEeCCCCCceEEEEEEEEecCCCHHHHHHHhhchhhhhHHHHhhhh
Confidence 4578899999999988888988533 1121111 0001111111111222222 23455678999999999998866556
Q ss_pred eeeccCCCccHHHHHHHhhccc--ccccccceeeEEeecc-ccCCCcEEEEEeecCCCCCCCCCCCCCccccccccccce
Q 003075 248 LSVIPTGNGGTIELIYMQTYAP--TTLAAARDFWLLRYST-SLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGF 324 (850)
Q Consensus 248 l~~~~~g~~G~lqLm~aE~~v~--SPLvp~Re~~fLRyck-q~~~G~waVvDvSld~~~~~~~~~~~~~f~r~~rlPSGc 324 (850)
|+.+.-.+. -. -|+. .+.+|+|||.+||.-+ .+..|.-+|+.+|++... .|+... +|+--+-|||
T Consensus 88 Ie~Ld~n~d-I~------yY~~~~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~----~pp~~g-VRa~~l~sgY 155 (205)
T cd08907 88 IEALENNTE-VY------HYVTDSMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDN----PQLEAG-VRAVLLTSQY 155 (205)
T ss_pred heeecCCCE-EE------EEEecCCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCc----CCCCCC-eEEEEEeccE
Confidence 655543211 00 0222 2568999999999875 467889999999998643 233334 9999999999
Q ss_pred eeeecCCCceEEEEEEeeeccCCCcc
Q 003075 325 LIRPCEGGGSIIHIVDHVDLDAWSVP 350 (850)
Q Consensus 325 lIq~~~nG~skVtwVeH~e~d~~~v~ 350 (850)
||++++.|.|+||-+-|++..-+ .|
T Consensus 156 lIep~g~g~s~ltyi~rvD~rG~-~P 180 (205)
T cd08907 156 LIEPCGMGRSRLTHICRADLRGR-SP 180 (205)
T ss_pred EEEECCCCCeEEEEEEEeCCCCC-Cc
Confidence 99999999999999999987544 44
No 51
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=97.69 E-value=0.00075 Score=70.28 Aligned_cols=191 Identities=18% Similarity=0.247 Sum_probs=137.2
Q ss_pred HHHHHHHHHhcCC--CCceEecCCCCCCCCc-ccceec-cCCCcceeeeeeeEE-eeChhhHHHHhcCc---cchhhcCC
Q 003075 172 ETLAEFLSKATGT--AVDWVQMIGMKPGPDS-IGIVAV-SRNCSGVAARACGLV-SLDPTKIAEILKDC---PSWFRDCR 243 (850)
Q Consensus 172 ~am~Ell~la~~~--~plWi~~~g~~~g~~~-~~~~~~-~~~~~~eASR~~glV-~m~~~~LVe~lmD~---~~W~~~f~ 243 (850)
+=++||+...+.. ...|-.... |.|+.. +.+.-. ..+...-.=|..+++ .+.+..|.+.|+|. .+|...|-
T Consensus 6 ~d~~~~~~~~~~~~~~~~W~~~~~-k~~~~~~i~vy~r~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~ 84 (209)
T cd08870 6 EDLRDLVQELQEGAEGQAWQQVMD-KSTPDMSYQAWRRKPKGTGLYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETVI 84 (209)
T ss_pred HHHHHHHHHhcCcCCCCcceEhhh-ccCCCceEEEEecccCCCCceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhhee
Confidence 3456666665543 257988754 234322 322211 122333467888888 57999999999995 67888888
Q ss_pred cceeeeeccCCCccHHHHHHHhhcccccccccceeeEEeeccccCCCcEEEEEeecCCCCCCCCCCCCCccccccccccc
Q 003075 244 CLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASG 323 (850)
Q Consensus 244 ~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~f~r~~rlPSG 323 (850)
..++|+.... .| ..++|..+..|-|+ -.||+...|=..+..+|..+|+=.|++. +..|.. .++|.+..=||
T Consensus 85 ~~~~le~~~~--~~-~~i~y~~~~~P~P~-s~RD~V~~r~~~~~~~~~~~i~~~sv~~----~~~P~~-~~vRv~~~~~~ 155 (209)
T cd08870 85 EHETLEEDEK--SG-TEIVRWVKKFPFPL-SDREYVIARRLWESDDRSYVCVTKGVPY----PSVPRS-GRKRVDDYESS 155 (209)
T ss_pred eEEEEEecCC--CC-cEEEEEEEECCCcC-CCceEEEEEEEEEcCCCEEEEEEeCCcC----CCCCCC-CcEEEEEEEeE
Confidence 8888876442 12 35678888899888 9999999987777778999888888774 233444 78999999999
Q ss_pred eeeeec--CCCceEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHHH-HHH
Q 003075 324 FLIRPC--EGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR-HIR 376 (850)
Q Consensus 324 clIq~~--~nG~skVtwVeH~e~d~~~v~~l~Rpl~~Sg~afgar~~~~aLr-~~e 376 (850)
++|++. .+|.++|+++=|.+- ...+| .-|++.....|...++..|| .|+
T Consensus 156 ~~i~p~~~~~~~t~~~~~~~~dp-~G~IP---~wlvN~~~~~~~~~~l~~l~~a~~ 207 (209)
T cd08870 156 LVIRAVKGDGQGSACEVTYFHNP-DGGIP---RELAKLAVKRGMPGFLKKLENALR 207 (209)
T ss_pred EEEEEecCCCCceEEEEEEEECC-CCCCC---HHHHHHHHHhhhHHHHHHHHHHHh
Confidence 999999 789999999999973 33566 35677777778888888886 664
No 52
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=97.65 E-value=0.00028 Score=75.16 Aligned_cols=169 Identities=16% Similarity=0.194 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHhcC--CCCceEecCCCCCCCCcccceeccCCCcceeeeeeeEEe-eChhhHHHHhcCcc---chhhcC
Q 003075 169 VAEETLAEFLSKATG--TAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVS-LDPTKIAEILKDCP---SWFRDC 242 (850)
Q Consensus 169 ~A~~am~Ell~la~~--~~plWi~~~g~~~g~~~~~~~~~~~~~~~eASR~~glV~-m~~~~LVe~lmD~~---~W~~~f 242 (850)
.-++-.+|.+++|.. ++..|--... +.|-.++..-....|.....=|+.++|. ..+..+.+.|.|.+ +|-..|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~W~l~~~-~~gikVy~r~~~~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~~ 85 (235)
T cd08872 7 EVDEKVQEQLTYALEDVGADGWQLFAE-EGEMKVYRREVEEDGVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWETTL 85 (235)
T ss_pred HHHHHHHHHHHHHHccCCCCCCEEEEe-CCceEEEEEECCCCCceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHhhh
Confidence 346778899999985 4667977532 1121111110000122223568888888 88999999999975 677777
Q ss_pred CcceeeeeccCCCccHHHHHHHhhcccccccccceeeEEeeccccCC-------CcEEEEEeecCCCCCCCCCCCCCccc
Q 003075 243 RCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLED-------GSLVVCERSLTSSTGGPTGPPPSSFV 315 (850)
Q Consensus 243 ~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~~~-------G~waVvDvSld~~~~~~~~~~~~~f~ 315 (850)
-..++|+.++.+. .+.|..+-.|=| +..|||.++|+.++.++ +.|+||..|++. +..|+...|+
T Consensus 86 ~~~~vie~l~~~~----~I~Y~~~k~PwP-vs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h----~~~P~~~g~V 156 (235)
T cd08872 86 ENFHVVETLSQDT----LIFHQTHKRVWP-AAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDH----DSAPLNNKCV 156 (235)
T ss_pred heeEEEEecCCCC----EEEEEEccCCCC-CCCcEEEEEEEEEecCccccccCCCeEEEEEecccC----ccCCCCCCeE
Confidence 7778888777532 335666667888 69999999999998776 789999999874 3345666889
Q ss_pred cccc---cccceeeeec--------CCCceEEEEEEeeeccCC
Q 003075 316 RAEM---LASGFLIRPC--------EGGGSIIHIVDHVDLDAW 347 (850)
Q Consensus 316 r~~r---lPSGclIq~~--------~nG~skVtwVeH~e~d~~ 347 (850)
|.+. +=.|.+|.+= .||.|+||++-|++---+
T Consensus 157 Rv~~~~~~~~~~~i~~~~g~~~~t~~~~~~~ity~~~~dPgG~ 199 (235)
T cd08872 157 RAKLTVAMICQTFVSPPDGNQEITRDNILCKITYVANVNPGGW 199 (235)
T ss_pred EEEEEeeeeeeeeeecCCCcccccCCCCeEEEEEEEEeCCCCC
Confidence 8875 2334343331 588999999999975544
No 53
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.56 E-value=0.0008 Score=70.21 Aligned_cols=175 Identities=18% Similarity=0.231 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEecCCCCCCCCcccceec-cCCCcceeeeeeeEEeeChhhHHHHhcCcc---chhhcC
Q 003075 167 LAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAV-SRNCSGVAARACGLVSLDPTKIAEILKDCP---SWFRDC 242 (850)
Q Consensus 167 ~~~A~~am~Ell~la~~~~plWi~~~g~~~g~~~~~~~~~-~~~~~~eASR~~glV~m~~~~LVe~lmD~~---~W~~~f 242 (850)
++-+...|.|+++-.+. +..|...... .| +.++-. .++....+-|.-|.+..++..+.++|.|.+ +|...|
T Consensus 4 ~~~~~~~~~~~~~~l~~-~~~W~~~~~~-~~---i~v~~r~~~~~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~ 78 (215)
T cd08877 4 IRQEATIMQENLKDLDE-SDGWTLQKES-EG---IRVYYKFEPDGSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFC 78 (215)
T ss_pred HHHHHHHHHHHHhcccC-CCCcEEeccC-CC---eEEEEEeCCCCCEEEEEEEEEecCChhHeEEEEehhhhHhhhcccc
Confidence 44455778888887765 5579886321 22 222211 112224677999999999999999999985 455555
Q ss_pred CcceeeeeccCCCccHHHHHHHhhcccccccccceeeEE-eecccc-CCCcEEEEEeecCCCCC-----CCCCCCCC-cc
Q 003075 243 RCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLL-RYSTSL-EDGSLVVCERSLTSSTG-----GPTGPPPS-SF 314 (850)
Q Consensus 243 ~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fL-Ryckq~-~~G~waVvDvSld~~~~-----~~~~~~~~-~f 314 (850)
-..++|..+... -++.|..+-.|-| +..||+.+. +.+..+ ++|..+|+=.|++.... ....|+.+ .+
T Consensus 79 ~~~~~l~~~~~~----~~v~y~~~~~PwP-v~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~ 153 (215)
T cd08877 79 IRSKKVKQLGRA----DKVCYLRVDLPWP-LSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKG 153 (215)
T ss_pred eeeEEEeecCCc----eEEEEEEEeCceE-ecceEEEEEEEEEeeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCc
Confidence 555666655432 1345555566777 888999986 556667 99999999999985322 11234455 88
Q ss_pred ccccccccceeeeecCCCceEEEEEEeeeccCCCccc
Q 003075 315 VRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPE 351 (850)
Q Consensus 315 ~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~ 351 (850)
+|.+...+|++|+++++|.|+|+++-|+|-.-+-||.
T Consensus 154 vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~IP~ 190 (215)
T cd08877 154 VRRIIKYYGFVITPISPTKCYLRFVANVDPKMSLVPK 190 (215)
T ss_pred eEEEEecceEEEEEcCCCCeEEEEEEEcCCCcccCCH
Confidence 9999999999999999999999999997633332774
No 54
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.55 E-value=0.00047 Score=70.21 Aligned_cols=147 Identities=17% Similarity=0.218 Sum_probs=99.0
Q ss_pred eeeeeeeEEeeChhhHHHHhcCccchh---hcCCcceeeeeccCCCccHHHHHHHhhcccccccccceeeEEeeccc-cC
Q 003075 213 VAARACGLVSLDPTKIAEILKDCPSWF---RDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTS-LE 288 (850)
Q Consensus 213 eASR~~glV~m~~~~LVe~lmD~~~W~---~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq-~~ 288 (850)
-.-|.+++|..++..+.+++.|.+.|. ..|...++|+-...+ . .++|..+..|=| |..|||.+.|.... .+
T Consensus 41 ~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~~---~-~i~~~~~~~p~p-vs~Rdfv~~~~~~~~~~ 115 (195)
T cd08876 41 KEFKAVAEVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDDN---E-RSVYTVIDLPWP-VKDRDMVLRSTTEQDAD 115 (195)
T ss_pred EEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCCC---c-EEEEEEEecccc-cCCceEEEEEEEEEcCC
Confidence 455899999999999999999976554 455555666654332 1 224444444444 78999998765433 33
Q ss_pred CCcEEEEEeecCCCCCCCCCCCCCccccccccccceeeeecCCCceEEEEEEeeeccCCCccccchhhhhhhHHHHHHHH
Q 003075 289 DGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMT 368 (850)
Q Consensus 289 ~G~waVvDvSld~~~~~~~~~~~~~f~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~Rpl~~Sg~afgar~~ 368 (850)
+|..+|.=.|.+.. .|....|+|.+.+.+|+.|++.++|.|+||++-|++..-+-..-+.+.+... +...+
T Consensus 116 ~~~~~i~~~s~~~~-----~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~iP~~lv~~~~~~----~~~~~ 186 (195)
T cd08876 116 DGSVTITLEAAPEA-----LPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGSIPGWLANAFAKD----APYNT 186 (195)
T ss_pred CCEEEEEeecCCcc-----CCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCCCCHHHHHHHHHH----HHHHH
Confidence 67777766666532 2334478999999999999999999999999999998744333333333322 33455
Q ss_pred HHHHH
Q 003075 369 MAAMR 373 (850)
Q Consensus 369 ~~aLr 373 (850)
+.+|+
T Consensus 187 l~~l~ 191 (195)
T cd08876 187 LENLR 191 (195)
T ss_pred HHHHH
Confidence 66664
No 55
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=97.54 E-value=5.7e-05 Score=59.11 Aligned_cols=34 Identities=35% Similarity=0.636 Sum_probs=28.7
Q ss_pred cCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHH
Q 003075 38 ECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCR 75 (850)
Q Consensus 38 ~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak 75 (850)
.+|||+..++.+|+++. ||+.+||..||-|.|.|
T Consensus 7 ~nPYPs~~ek~~L~~~t----gls~~Qi~~WF~NaRrR 40 (40)
T PF05920_consen 7 HNPYPSKEEKEELAKQT----GLSRKQISNWFINARRR 40 (40)
T ss_dssp TSGS--HHHHHHHHHHH----TS-HHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHhHcc
Confidence 36999999999999999 99999999999999964
No 56
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.48 E-value=0.00026 Score=75.45 Aligned_cols=121 Identities=20% Similarity=0.218 Sum_probs=92.6
Q ss_pred eeeeeeEEeeChhhHHHHhcCcc---chhhcCCcceeeeeccCCCccHHHHHHHhhcccccccccceeeEEeecccc-CC
Q 003075 214 AARACGLVSLDPTKIAEILKDCP---SWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSL-ED 289 (850)
Q Consensus 214 ASR~~glV~m~~~~LVe~lmD~~---~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~-~~ 289 (850)
+=|.-+.|...+.+|++.|.|.+ +|-..+...++|+-+.... .++|..+..|. -+.+|||.++|+.++. ++
T Consensus 78 ~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~~~~e~evI~~id~d~----~iyy~~~p~Pw-Pvk~RDfV~~~s~~~~~~~ 152 (235)
T cd08873 78 SFCVELKVQTCASDAFDLLSDPFKRPEWDPHGRSCEEVKRVGEDD----GIYHTTMPSLT-SEKPNDFVLLVSRRKPATD 152 (235)
T ss_pred EEEEEEEecCCHHHHHHHHhCcchhhhhhhcccEEEEEEEeCCCc----EEEEEEcCCCC-CCCCceEEEEEEEEeccCC
Confidence 34666668899999999999974 6777788888888776421 23443333333 4889999999999984 44
Q ss_pred -CcEEEEEeecCCCCCCCCCCCCCccccccccccceeeeecCCCceEEEEEEeee
Q 003075 290 -GSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVD 343 (850)
Q Consensus 290 -G~waVvDvSld~~~~~~~~~~~~~f~r~~rlPSGclIq~~~nG~skVtwVeH~e 343 (850)
+..+|.=.|+.. +..|+.+.|+|.+.+=+|++|++.++|.|+||.+-|+|
T Consensus 153 ~~~~~I~~~SV~h----~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~d 203 (235)
T cd08873 153 GDPYKVAFRSVTL----PRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETN 203 (235)
T ss_pred CCeEEEEEeeeec----ccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcC
Confidence 348887777752 23556779999999999999999999999999999986
No 57
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=97.44 E-value=7.5e-05 Score=78.91 Aligned_cols=57 Identities=30% Similarity=0.582 Sum_probs=53.3
Q ss_pred CCCcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003075 18 STKYVRYTPEQVEALERVYSE---CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (850)
Q Consensus 18 ~rkR~r~T~~Ql~~LE~~F~~---~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 78 (850)
+|||..|+..-.++|..+|.. +|||+.+.+++||+++ |++-.||-.||.|+|-+.||
T Consensus 189 rRKRRNFsK~aTeiLneyF~~h~~nPYPSee~K~eLAkqC----nItvsQvsnwfgnkrIrykK 248 (334)
T KOG0774|consen 189 RRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKQC----NITVSQVSNWFGNKRIRYKK 248 (334)
T ss_pred HHhhcccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHc----Cceehhhccccccceeehhh
Confidence 678889999999999999965 5999999999999999 99999999999999988887
No 58
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription]
Probab=97.15 E-value=0.00053 Score=79.36 Aligned_cols=58 Identities=21% Similarity=0.323 Sum_probs=53.9
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHH
Q 003075 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 77 (850)
Q Consensus 16 ~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~K 77 (850)
..||.|..||..|...|..+|+++++|+.+..+.|+.+| +|+...|..||-|-|.|.+
T Consensus 419 ~~KKPRlVfTd~QkrTL~aiFke~~RPS~Emq~tIS~qL----~L~~sTV~NfFmNaRRRsl 476 (558)
T KOG2252|consen 419 QTKKPRLVFTDIQKRTLQAIFKENKRPSREMQETISQQL----NLELSTVINFFMNARRRSL 476 (558)
T ss_pred cCCCceeeecHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----CCcHHHHHHHHHhhhhhcc
Confidence 347889999999999999999999999999999999999 9999999999999987753
No 59
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=97.08 E-value=0.0021 Score=68.59 Aligned_cols=132 Identities=21% Similarity=0.362 Sum_probs=100.6
Q ss_pred eeeeeeeEEeeChhhHHHHhcCc---cchhhcCCcceeeeeccCCCccHHHHHHHhhcccc-cccccceeeEEeeccccC
Q 003075 213 VAARACGLVSLDPTKIAEILKDC---PSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPT-TLAAARDFWLLRYSTSLE 288 (850)
Q Consensus 213 eASR~~glV~m~~~~LVe~lmD~---~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~S-PLvp~Re~~fLRyckq~~ 288 (850)
-+-|.-..|...+..|.+.|.|. .+|...|...++|+-++.... +|...-.|- | +..|||-++|=-.+..
T Consensus 78 l~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~~e~~vI~qld~~~~-----vY~~~~pPw~P-vk~RD~V~~~s~~~~~ 151 (236)
T cd08914 78 LSVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHFLSCEVIDWVSEDDQ-----IYHITCPIVNN-DKPKDLVVLVSRRKPL 151 (236)
T ss_pred EEEEEEEEEcCCHHHHHHHHhChhhhchhHHhhceEEEEEEeCCCcC-----EEEEecCCCCC-CCCceEEEEEEEEecC
Confidence 35566678899999999999996 578888888889888775332 344332332 3 4899999987766555
Q ss_pred -CCc-EEEEEeecCCCCCCCCCCCCCccccccccccceeeeecCCCceEEEEEEeeeccCCCccccchhh
Q 003075 289 -DGS-LVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPL 356 (850)
Q Consensus 289 -~G~-waVvDvSld~~~~~~~~~~~~~f~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~Rpl 356 (850)
+|. ++|.=.|+.. +..|+.+.|+|.+.+=+|++|++.++|.|+||.+-|+| +..+|...-++
T Consensus 152 ~dg~~~~I~~~SVp~----~~~Pp~kg~VRv~~~~~G~~I~pl~~~~~~VtY~~~~d--Pg~lp~~~~n~ 215 (236)
T cd08914 152 KDGNTYVVAVKSVIL----PSVPPSPQYIRSEIICAGFLIHAIDSNSCTVSYFNQIS--ASILPYFAGNL 215 (236)
T ss_pred CCCCEEEEEEeeccc----ccCCCCCCcEEeEEEEEEEEEEEcCCCcEEEEEEEEcC--CccchheEEec
Confidence 885 8888888864 34567779999999999999999999999999999995 46666544444
No 60
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=97.06 E-value=0.0037 Score=66.96 Aligned_cols=124 Identities=22% Similarity=0.367 Sum_probs=94.3
Q ss_pred eeeeEEeeChhhHHHHhcCcc---chhhcCCcceeeeeccCCCccHHHHHHHhhcccc-c---ccccceeeEEeecccc-
Q 003075 216 RACGLVSLDPTKIAEILKDCP---SWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPT-T---LAAARDFWLLRYSTSL- 287 (850)
Q Consensus 216 R~~glV~m~~~~LVe~lmD~~---~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~S-P---Lvp~Re~~fLRyckq~- 287 (850)
|.-+.|...+..|.+.|.|.+ +|-..|-..++|+.+..... + .++.+ | -+..|||-.++...+.
T Consensus 84 K~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~id~~~~-----v---Y~v~~~p~~~pvs~RDfV~~~s~~~~~ 155 (240)
T cd08913 84 KVEMVVHVDAAQAFLLLSDLRRRPEWDKHYRSCELVQQVDEDDA-----I---YHVTSPSLSGHGKPQDFVILASRRKPC 155 (240)
T ss_pred EEEEEEcCCHHHHHHHHhChhhhhhhHhhccEEEEEEecCCCcE-----E---EEEecCCCCCCCCCCeEEEEEEEEecc
Confidence 556789999999999999974 67778888888888775311 1 22332 2 5889999999888664
Q ss_pred CCC-cEEEEEeecCCCCCCCCCCCCCccccccccccceeeeecCCCceEEEEEEeeeccCCCccccc
Q 003075 288 EDG-SLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVL 353 (850)
Q Consensus 288 ~~G-~waVvDvSld~~~~~~~~~~~~~f~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~ 353 (850)
++| .++|+=.|+.. |..|+...|+|.+.+..|++|++.++|.|+||++-|++ +..+|...
T Consensus 156 ~~g~~yii~~~sv~~----P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~d--PG~LP~~~ 216 (240)
T cd08913 156 DNGDPYVIALRSVTL----PTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQAT--PGVLPYIS 216 (240)
T ss_pred CCCccEEEEEEEeec----CCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeC--CccccHHH
Confidence 444 57777777653 33567779999999999999999999999999999998 34666443
No 61
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=96.99 E-value=0.0028 Score=66.15 Aligned_cols=148 Identities=20% Similarity=0.273 Sum_probs=106.7
Q ss_pred eeeeeeeEE-eeChhhHHHHhcCc---cchhhcCCcceeeeeccCCCccHHHHHHHhhcccccccccceeeEEeecccc-
Q 003075 213 VAARACGLV-SLDPTKIAEILKDC---PSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSL- 287 (850)
Q Consensus 213 eASR~~glV-~m~~~~LVe~lmD~---~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~- 287 (850)
..=|+.+++ ...+..+++.|+|. .+|...+-..++|+....- ++ .++|..+..|-|+ -.||+.+.|-..+.
T Consensus 45 ~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~--~~-~i~y~~~~~P~P~-s~RD~V~~r~~~~~~ 120 (207)
T cd08911 45 YEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPET--GS-EIIYWEMQWPKPF-ANRDYVYVRRYIIDE 120 (207)
T ss_pred EEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCC--CC-EEEEEEEECCCCC-CCccEEEEEEEEEcC
Confidence 356776655 78999999999997 5788888888888764331 22 4577788899886 99999999876655
Q ss_pred CCCcEEEEEeecCCCCCCCCCCCCCccccccccccceeeeecC---CCceEEEEEEeeeccCC-CccccchhhhhhhHHH
Q 003075 288 EDGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCE---GGGSIIHIVDHVDLDAW-SVPEVLRPLYESSKIL 363 (850)
Q Consensus 288 ~~G~waVvDvSld~~~~~~~~~~~~~f~r~~rlPSGclIq~~~---nG~skVtwVeH~e~d~~-~v~~l~Rpl~~Sg~af 363 (850)
++|.++|+-.|++. +..|....++|.....||++|++.. +++|+|+++-|. |++ .+|. -+++.-..-
T Consensus 121 ~~~~~~i~~~sv~h----p~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~--dPgG~IP~---~lvN~~~~~ 191 (207)
T cd08911 121 ENKLIVIVSKAVQH----PSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFD--NPGVNIPS---YITSWVAMS 191 (207)
T ss_pred CCCEEEEEEecCCC----CCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEe--CCCCccCH---HHHHHHHHh
Confidence 45778898888874 2344556899999999999999984 678999988885 665 4773 233333333
Q ss_pred HHHHHHHHHH
Q 003075 364 AQKMTMAAMR 373 (850)
Q Consensus 364 gar~~~~aLr 373 (850)
+.-.|+.-|+
T Consensus 192 ~~~~~l~~l~ 201 (207)
T cd08911 192 GMPDFLERLR 201 (207)
T ss_pred hccHHHHHHH
Confidence 4444555553
No 62
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=96.91 E-value=0.00092 Score=69.67 Aligned_cols=61 Identities=36% Similarity=0.646 Sum_probs=56.0
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHH
Q 003075 17 DSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 81 (850)
Q Consensus 17 ~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq~ 81 (850)
.++.++.++..|+..++..|...++|+...+.+|+..+ |+.++.+++||||+|++.|+.+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~----~~~~~~~q~~~~~~~~~~~~~~~ 213 (235)
T KOG0490|consen 153 PRRPRTTFTENQLEVLETVFRATPKPDADDREQLAEET----GLSERVIQVWFQNRRAKLRKHKR 213 (235)
T ss_pred cCCCccccccchhHhhhhcccCCCCCchhhHHHHHHhc----CCChhhhhhhcccHHHHHHhhcc
Confidence 35667889999999999999999999999999999999 99999999999999999987543
No 63
>PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain []. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs []. In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand []. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2GJ3_A 4F3L_B 1XFN_A 1OTD_A 2PYR_A 1KOU_A 1XFQ_A 2ZOI_A 2ZOH_A 1OTA_A ....
Probab=96.81 E-value=0.017 Score=51.52 Aligned_cols=108 Identities=19% Similarity=0.153 Sum_probs=78.9
Q ss_pred HHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCee
Q 003075 733 LLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGM 811 (850)
Q Consensus 733 ~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~Gv 811 (850)
.++.+.+ .|.+|+..+. +=.+.|.|+++.++|+++-+++.+-+.---..+.++.+....+.+...++--..-.-+
T Consensus 2 ~~~~i~~~~~~~i~~~d~----~g~I~~~N~a~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (113)
T PF00989_consen 2 RYRAILENSPDGIFVIDE----DGRILYVNQAAEELLGYSREELIGKSLFDLIHPEDRRELRERLRQALSQGESGESFEV 77 (113)
T ss_dssp HHHHHHHCSSSEEEEEET----TSBEEEECHHHHHHHSS-HHHHTTSBGGGGCSGGGHHHHHHHHHHHHHHCCHECEEEE
T ss_pred HHHHHHhcCCceEEEEeC----cCeEEEECHHHHHHHccCHHHHcCCcHHHhcCchhhHHHHHHHHHHHHcCCCceeEEE
Confidence 3455554 7888887763 4789999999999999999999998888777777666777777777777665554445
Q ss_pred EEcC-CCCeEEEcceEEeEeecCCCCeeEEEEeec
Q 003075 812 CVSS-MGRAVSYEQAVAWKVLDDDDSNHCLAFMFM 845 (850)
Q Consensus 812 Riss-~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~ 845 (850)
++.. .|+.++++ ..+=.+.|.+|+..|.-.+|.
T Consensus 78 ~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 111 (113)
T PF00989_consen 78 RFRLRDGRPRWVE-VRASPVRDEDGQIIGILVIFR 111 (113)
T ss_dssp EEEETTSCEEEEE-EEEEEEEETTEEEEEEEEEEE
T ss_pred EEEecCCcEEEEE-EEEEEEEeCCCCEEEEEEEEE
Confidence 5555 88888874 344455788888878776664
No 64
>PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. ; PDB: 3K3D_A 3K3C_B 3KX0_X 3FC7_B 3LUQ_D 3MXQ_A 3BWL_C 3FG8_A.
Probab=96.58 E-value=0.02 Score=50.81 Aligned_cols=104 Identities=13% Similarity=0.177 Sum_probs=81.2
Q ss_pred cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEEcCCCC
Q 003075 739 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGR 818 (850)
Q Consensus 739 ~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Gr 818 (850)
+.|.+|+..+. |=.+.|+|+++.++|+.+-.++++.+...-..+..+++....+.++.+.|-.....-+... .|+
T Consensus 3 ~~p~~i~v~D~----~~~i~~~N~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 77 (110)
T PF08448_consen 3 SSPDGIFVIDP----DGRIVYANQAAAELFGVSPEELIGRSLFDLLPPEDREEFQAALRRALAGGEPVFFEEILLR-DGE 77 (110)
T ss_dssp HCSSEEEEEET----TSBEEEE-HHHHHHHTSTHHHHTTSBHHHHSCCGCHHHHHHHHHHHHHHTSEEEEEEEECT-TSC
T ss_pred CCCceeEEECC----CCEEEEEHHHHHHHhCCCHHHHhhccchhccccchhhhhHHHHHHhhccCceEEEEEEEee-cCC
Confidence 46777776643 5789999999999999999999999999877788999999999999999876554433333 666
Q ss_pred eEEEcceEEeEeecCCCCeeEEEEeecCcc
Q 003075 819 AVSYEQAVAWKVLDDDDSNHCLAFMFMNWS 848 (850)
Q Consensus 819 rf~i~~a~vW~l~d~~g~~~gqAa~F~~W~ 848 (850)
..++ +..+=-+.|++|...|..+++.|-+
T Consensus 78 ~~~~-~~~~~Pi~~~~g~~~g~~~~~~DiT 106 (110)
T PF08448_consen 78 ERWF-EVSISPIFDEDGEVVGVLVIIRDIT 106 (110)
T ss_dssp EEEE-EEEEEEEECTTTCEEEEEEEEEEEC
T ss_pred cEEE-EEEEEEeEcCCCCEEEEEEEEEECc
Confidence 6655 4466667799999999988876643
No 65
>PRK13557 histidine kinase; Provisional
Probab=96.17 E-value=0.039 Score=63.40 Aligned_cols=113 Identities=9% Similarity=-0.013 Sum_probs=79.6
Q ss_pred HHHHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCC
Q 003075 731 DALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPG 809 (850)
Q Consensus 731 ~~~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~ 809 (850)
...+..+.+ .+.+|+..+.. ..|-.+.|+|+++.++|+|+.+|+.+.+...-..+...++....+.+....|-.....
T Consensus 29 ~~~~~~~~~~~~~~i~v~d~~-~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (540)
T PRK13557 29 SDIFFAAVETTRMPMIVTDPN-QPDNPIVFANRAFLEMTGYAAEEIIGNNCRFLQGPETDRATVAEVRDAIAERREIATE 107 (540)
T ss_pred hHHHHHHHHhCcCcEEEEcCC-CCCCCEEEEcHHHHHHhCCCHHHhcCCChHhhcCCCCCHHHHHHHHHHHHcCCCceEE
Confidence 344555544 77787777653 2467899999999999999999999999876665554455555555555555433333
Q ss_pred eeEEcCCCCeEEEcceEEeEeecCCCCeeEEEEeec
Q 003075 810 GMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFM 845 (850)
Q Consensus 810 GvRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~ 845 (850)
-.+..+.|+.+++. ..+--+.|.+|...|...+..
T Consensus 108 ~~~~~~~G~~~~~~-~~~~~i~~~~g~~~~~~~~~~ 142 (540)
T PRK13557 108 ILNYRKDGSSFWNA-LFVSPVYNDAGDLVYFFGSQL 142 (540)
T ss_pred EEEEeCCCCEEEEE-EEEEEeECCCCCEEEEEEEec
Confidence 34567899999885 456668899999888766554
No 66
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=95.43 E-value=0.8 Score=48.16 Aligned_cols=174 Identities=16% Similarity=0.261 Sum_probs=102.4
Q ss_pred CCCCccccccCCCcceEEEEecCCCCCCCCCCccCCCCCCceeEEEeeecccccCChHHHHHHHhh--hhcccccccccc
Q 003075 416 LDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HRSEWADYGVDA 493 (850)
Q Consensus 416 ~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~lf~FLRd--~R~eWd~~~~d~ 493 (850)
..++|.... ..+++.|..+++.+. .+. + .++..-+ |.+|+.||+||.+ +|.+||.. +.
T Consensus 20 ~~~gWk~~k--~~~~~~v~~k~~~~~--~gk-----------l--~k~egvi-~~~~e~v~~~l~~~e~r~~Wd~~-~~- 79 (204)
T cd08904 20 DTSGWKVVK--TSKKITVSWKPSRKY--HGN-----------L--YRVEGII-PESPAKLIQFMYQPEHRIKWDKS-LQ- 79 (204)
T ss_pred cccCCeEEe--cCCceEEEEEEcCCC--Cce-----------E--EEEEEEe-cCCHHHHHHHHhccchhhhhccc-cc-
Confidence 348998873 348899999987531 112 1 2344556 8999999999997 99999962 11
Q ss_pred hhhhhhccCCCCCCCCCCCCCCCcceEeeccccCCCCceEEEEEecCCCCCccccccccceEeEeeccCcCCCCCCceeE
Q 003075 494 YSAACLKASPYAVPCARPGGFPSSHVILPLAHTVEHEEFLEVVRLEGHAFSPEDVALARDMYLLQLCSGIDENTVGACAQ 573 (850)
Q Consensus 494 ~s~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~s~~~liLQe~~~~De~~~Gs~s~ 573 (850)
+ .+.+-+| +...+|...+..+.. -.-+-+||.+.+|-.--.| |. .+
T Consensus 80 -------~---------------~~iie~I----d~~T~I~~~~~~~~~---~~~vspRDfV~vr~~~r~~----~~-~~ 125 (204)
T cd08904 80 -------V---------------YKMLQRI----DSDTFICHTITQSFA---MGSISPRDFVDLVHIKRYE----GN-MN 125 (204)
T ss_pred -------c---------------eeeEEEe----CCCcEEEEEeccccc---CCcccCceEEEEEEEEEeC----CC-EE
Confidence 1 2444444 555577766654311 1125568888887742223 22 23
Q ss_pred EE-eecccCC----CCCCC--ccccCceEEecCCccccccCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCceEE
Q 003075 574 LV-FAPIDES----FADDA--PLLASGFRVIPLDSKAAMQDGPAASRTLDLASALEVGSGGARPAGGTELSNYNSRSVLT 646 (850)
Q Consensus 574 vV-yAPvD~~----ds~~v--~LLPSGF~I~P~~~~~~~~Dg~~~~~tldlas~le~~~~~~~~~~~~~~~~~~~gSlLT 646 (850)
++ +.-|+-+ .+..| -..|+||.|.|+.. ..++|.||
T Consensus 126 ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~-------------------------------------~p~~t~l~ 168 (204)
T cd08904 126 IVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPE-------------------------------------NPAYSKLV 168 (204)
T ss_pred EEEEEecccCCCCCCCCcEEEeeeccEEEEEECCC-------------------------------------CCCceEEE
Confidence 33 3334332 24444 37899999999310 02468899
Q ss_pred EEeecccccc-ccchHHHHHhhhHhHHHHHHHHHHHHh
Q 003075 647 IAFQFTFENH-MRDNVAAMARQYVRSVVGSVQRVAMAI 683 (850)
Q Consensus 647 vaFQ~l~~~~-~~~sVa~~~~~~v~~v~~tvqri~~AL 683 (850)
.-+|+=...- |..-|..+.. .++++.....+.||
T Consensus 169 ~~~~~DlkG~lP~~vv~~~~~---~~~~~f~~~~~~~~ 203 (204)
T cd08904 169 MFVQPELRGNLSRSVIEKTMP---TNLVNLILDAKDGI 203 (204)
T ss_pred EEEEeCCCCCCCHHHHHHHhH---HHHHHHHHHHHHhc
Confidence 9999666643 5544444322 23445555555555
No 67
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=95.30 E-value=0.012 Score=74.02 Aligned_cols=63 Identities=21% Similarity=0.333 Sum_probs=57.4
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHHHH
Q 003075 17 DSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEAS 83 (850)
Q Consensus 17 ~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq~~~ 83 (850)
++++|++++..|+..+..+|....+|...+.+.|...+ +++++.|.+||||-|+|.|+..++.
T Consensus 903 r~a~~~~~~d~qlk~i~~~~~~q~~~~~~~~E~l~~~~----~~~~~~i~vw~qna~~~s~k~~~n~ 965 (1406)
T KOG1146|consen 903 RRAYRTQESDLQLKIIKACYEAQRTPTMQECEVLEEPI----GLPKRVIQVWFQNARAKSKKAKLNG 965 (1406)
T ss_pred hhhhccchhHHHHHHHHHHHhhccCChHHHHHhhcccc----cCCcchhHHhhhhhhhhhhhhhhcc
Confidence 36678999999999999999999999999999999999 9999999999999999999866543
No 68
>PRK13559 hypothetical protein; Provisional
Probab=94.78 E-value=0.21 Score=55.02 Aligned_cols=114 Identities=12% Similarity=-0.017 Sum_probs=77.5
Q ss_pred HHHHHHHh-cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCC
Q 003075 731 DALLKQLW-HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPG 809 (850)
Q Consensus 731 ~~~~~~L~-~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~ 809 (850)
...++.++ +.+.+|+..+.. ..+-.+.|.|.++.++|+|+.+++.+.+.+.-..+....+....+..+.+.|-.....
T Consensus 42 ~~~~~~~~e~~~~~i~i~D~~-~~~g~i~~~N~a~~~l~G~~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 120 (361)
T PRK13559 42 GRLFEQAMEQTRMAMCITDPH-QPDLPIVLANQAFLDLTGYAAEEVVGRNCRFLQGAATDPIAVAKIRAAIAAEREIVVE 120 (361)
T ss_pred hhHHHHHHHhCCCcEEEecCC-CCCCcEEEEchHHHHHhCCCHHHHcCCChhhhcCCCCCHHHHHHHHHHhccCCceEEE
Confidence 44455555 478888888764 2366899999999999999999999988765444444444455556666666544444
Q ss_pred eeEEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003075 810 GMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 810 GvRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
-.+..+.|+.|+++- .+=-+.|++|.+.|...++.+
T Consensus 121 ~~~~~~dG~~~~~~~-~~~~i~d~~G~~~~~v~~~~D 156 (361)
T PRK13559 121 LLNYRKDGEPFWNAL-HLGPVYGEDGRLLYFFGSQWD 156 (361)
T ss_pred EEEEcCCCCEEEEEE-EEEEEEcCCCCEEEeeeeeee
Confidence 455678898887743 222356888888776666544
No 69
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=94.54 E-value=3.6 Score=42.72 Aligned_cols=57 Identities=21% Similarity=0.404 Sum_probs=42.9
Q ss_pred CCCCccccccCCCcceEEEEecCCCCCCCCCCccCCCCCCceeEEEeeecccccCChHHHHHHHhhhhcccccc
Q 003075 416 LDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLREHRSEWADY 489 (850)
Q Consensus 416 ~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~lf~FLRd~R~eWd~~ 489 (850)
..++|.... ..++|+|.+++..+ +. .+..-++.+-+ +.+|+.|++.|.|.|.+||..
T Consensus 17 ~~~~W~~~~--~~~gi~I~~k~~~~----~~----------~l~~~K~~~~v-~a~~~~v~~~l~d~r~~Wd~~ 73 (197)
T cd08869 17 KSKGWVSVS--SSDHVELAFKKVDD----GH----------PLRLWRASTEV-EAPPEEVLQRILRERHLWDDD 73 (197)
T ss_pred ccCCceEEe--cCCcEEEEEEeCCC----CC----------cEEEEEEEEEe-CCCHHHHHHHHHHHHhccchh
Confidence 468998654 35699999998742 11 23344777888 799999999999999999963
No 70
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=94.52 E-value=3.6 Score=43.44 Aligned_cols=58 Identities=24% Similarity=0.382 Sum_probs=43.1
Q ss_pred CCCCCccccccCCCcceEEEEecCCCCCCCCCCccCCCCCCceeEEEeeecccccCChHHHHHHHhhhhcccccc
Q 003075 415 FLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLREHRSEWADY 489 (850)
Q Consensus 415 s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~lf~FLRd~R~eWd~~ 489 (850)
-...||.... +.++|.|.+++..+ | . |...+.| |+=++.+|.+.|+|.|+| |..||..
T Consensus 24 ek~kgW~~~~--~~~~vev~~kk~~d---~-~-------~l~lwk~---s~ei~~~p~~vl~rvL~d-R~~WD~~ 81 (205)
T cd08907 24 ERFKGWHSAP--GPDNTELACKKVGD---G-H-------PLRLWKV---STEVEAPPSVVLQRVLRE-RHLWDED 81 (205)
T ss_pred hccCCceeec--CCCCcEEEEEeCCC---C-C-------ceEEEEE---EEEecCCCHHHHHHHhhc-hhhhhHH
Confidence 5567998764 35789999998753 2 2 2334544 455678999999999999 9999973
No 71
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=94.21 E-value=3.1 Score=43.66 Aligned_cols=65 Identities=23% Similarity=0.408 Sum_probs=44.5
Q ss_pred HHHhhhccCCCCCCccccccCCCcceEEEEecCCCCCCCCCCccCCCCCCceeEEEeeecccccCChHHHHHHHhh--hh
Q 003075 406 RGFNDAINGFLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HR 483 (850)
Q Consensus 406 ~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~lf~FLRd--~R 483 (850)
..|..-+ ...++|..... .++|+|..++.. + +.+...++...++.+||+.+|++|.| .|
T Consensus 13 ~~~~~~~--~~~~~W~~~~~--~~gi~iy~r~~~----~-----------~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r 73 (222)
T cd08871 13 EEFKKLC--DSTDGWKLKYN--KNNVKVWTKNPE----N-----------SSIKMIKVSAIFPDVPAETLYDVLHDPEYR 73 (222)
T ss_pred HHHHHHh--cCCCCcEEEEc--CCCeEEEEeeCC----C-----------CceEEEEEEEEeCCCCHHHHHHHHHChhhh
Confidence 3444444 23568997642 467999888764 1 13344555566657999999999998 89
Q ss_pred cccccc
Q 003075 484 SEWADY 489 (850)
Q Consensus 484 ~eWd~~ 489 (850)
.+||..
T Consensus 74 ~~Wd~~ 79 (222)
T cd08871 74 KTWDSN 79 (222)
T ss_pred hhhhhh
Confidence 999973
No 72
>TIGR00229 sensory_box PAS domain S-box. The PAS domain was previously described. This sensory box, or S-box domain occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include heme in the oxygen sensor FixL, FAD in the redox potential sensor NifL, and a 4-hydroxycinnamyl chromophore in photoactive yellow protein. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator.
Probab=93.84 E-value=0.97 Score=37.12 Aligned_cols=108 Identities=11% Similarity=0.118 Sum_probs=65.7
Q ss_pred HHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCee
Q 003075 733 LLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGM 811 (850)
Q Consensus 733 ~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~Gv 811 (850)
.++.++. .|.+++..+. +-.+.|.|.++.++|+++..++.+.+......+.........+.++.+.+......-+
T Consensus 4 ~~~~~~~~~~~~~~~~d~----~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (124)
T TIGR00229 4 RYRAIFESSPDAIIVIDL----EGNILYVNPAFEEIFGYSAEELIGRNVLELIPEEDREEVRERIERLLEGEREPVSEER 79 (124)
T ss_pred HHHHHHhhCCceEEEEcC----CCcEEEEchHHHHHhCCChHHhcCcchhhhcChhhhHHHHHHHHHHHcCCCCCcceEe
Confidence 3455555 5556665544 4679999999999999999999888776655555555455555666553322222233
Q ss_pred EE-cCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003075 812 CV-SSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 812 Ri-ss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
++ ...|+.+++.- .+-.+. ++|...|...++.+
T Consensus 80 ~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~d 113 (124)
T TIGR00229 80 RVRRKDGSEIWVEV-SVSPIR-TNGGELGVVGIVRD 113 (124)
T ss_pred eeEcCCCCEEEEEE-EEeehh-hCCCeeEEEEEeee
Confidence 43 56676665532 222233 56777776665543
No 73
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=93.57 E-value=0.063 Score=45.20 Aligned_cols=42 Identities=19% Similarity=0.397 Sum_probs=31.3
Q ss_pred HHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhh
Q 003075 28 QVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRR 73 (850)
Q Consensus 28 Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRR 73 (850)
-++-|+++|...+++....-..|..+. +|+..||+-||--|+
T Consensus 9 d~~pL~~Yy~~h~~L~E~DL~~L~~kS----~ms~qqVr~WFa~~~ 50 (56)
T PF11569_consen 9 DIQPLEDYYLKHKQLQEEDLDELCDKS----RMSYQQVRDWFAERM 50 (56)
T ss_dssp --HHHHHHHHHT----TTHHHHHHHHT----T--HHHHHHHHHHHS
T ss_pred chHHHHHHHHHcCCccHhhHHHHHHHH----CCCHHHHHHHHHHhc
Confidence 356799999999999999999999999 999999999997654
No 74
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=93.54 E-value=0.26 Score=47.35 Aligned_cols=94 Identities=12% Similarity=0.171 Sum_probs=57.2
Q ss_pred CCcccCCHHHHH-HHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHhhH
Q 003075 19 TKYVRYTPEQVE-ALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNK 97 (850)
Q Consensus 19 rkR~r~T~~Ql~-~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq~~~~l~~~n~~l~aen~ 97 (850)
+++.+||.++.. .+...+... ....++|+++ |+++.++..|.+-=+ ....................
T Consensus 8 ~~rr~ys~EfK~~aV~~~~~~g-----~sv~evA~e~----gIs~~tl~~W~r~y~----~~~~~~~~~~~~~~~~~~~~ 74 (121)
T PRK09413 8 EKRRRRTTQEKIAIVQQSFEPG-----MTVSLVARQH----GVAASQLFLWRKQYQ----EGSLTAVAAGEQVVPASELA 74 (121)
T ss_pred CCCCCCCHHHHHHHHHHHHcCC-----CCHHHHHHHH----CcCHHHHHHHHHHHh----hcccccccccccCCchhHHH
Confidence 445678888755 444444432 3567789999 999999999954322 11100000000011111223
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003075 98 LLMEENDRLQKQVSHLVYENGYMRQQLH 125 (850)
Q Consensus 98 ~l~ee~~~l~~e~~~L~~En~~Lk~el~ 125 (850)
.+.+++.+|++++.+|+.||.-||.-..
T Consensus 75 ~~~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788899999999999999998764
No 75
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=93.44 E-value=0.52 Score=57.99 Aligned_cols=110 Identities=13% Similarity=0.068 Sum_probs=80.9
Q ss_pred HHHHHHh-cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCe
Q 003075 732 ALLKQLW-HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGG 810 (850)
Q Consensus 732 ~~~~~L~-~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~G 810 (850)
..++.++ +.|++|+..+.. =.++|.|+++.++|+++.+++.+.+..--..+.....-.....++.+.|-...+.-
T Consensus 155 ~~l~~il~~~~~~i~~~D~~----g~i~~~N~a~~~l~G~~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~ 230 (779)
T PRK11091 155 SLLRSFLDASPDLVYYRNED----GEFSGCNRAMELLTGKSEKQLIGLTPKDVYSPEAAEKVIETDEKVFRHNVSLTYEQ 230 (779)
T ss_pred HHHHHHHhcCcceEEEECCC----CcEEeEcHHHHHHhCcCHHHHcCCChHHhCCHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 3345554 478888877654 68999999999999999999999876655555544444555566777776666655
Q ss_pred eEEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003075 811 MCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 811 vRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
....+.|+.++++ ..+..+.|++|...|..+++.+
T Consensus 231 ~~~~~~G~~~~~~-~~~~pi~~~~g~~~g~v~~~~D 265 (779)
T PRK11091 231 WLDYPDGRKACFE-LRKVPFYDRVGKRHGLMGFGRD 265 (779)
T ss_pred EEEcCCCCEEEEE-EEeeeEEcCCCCEEEEEEEEee
Confidence 5667789888874 4566778999999998877754
No 76
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription]
Probab=93.30 E-value=0.04 Score=61.64 Aligned_cols=57 Identities=25% Similarity=0.292 Sum_probs=48.9
Q ss_pred CCCcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003075 18 STKYVRYTPEQVEALERVYSE---CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (850)
Q Consensus 18 ~rkR~r~T~~Ql~~LE~~F~~---~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 78 (850)
+|++..+....+..|+.+..+ .|||+...+..|++++ ||+..||..||-|.|-|..+
T Consensus 240 ~r~~~~lP~~a~~ilr~Wl~~h~~~PYPse~~K~~La~~T----GLs~~Qv~NWFINaR~R~w~ 299 (342)
T KOG0773|consen 240 WRPQRGLPKEAVSILRAWLFEHLLHPYPSDDEKLMLAKQT----GLSRPQVSNWFINARVRLWK 299 (342)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCcchhccccchhc----CCCcccCCchhhhcccccCC
Confidence 455667999999999988544 4899999999999999 99999999999999976554
No 77
>cd00130 PAS PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Probab=92.42 E-value=2.3 Score=32.84 Aligned_cols=98 Identities=14% Similarity=0.123 Sum_probs=56.2
Q ss_pred CCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEE-cCCCCe
Q 003075 741 SDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCV-SSMGRA 819 (850)
Q Consensus 741 ~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRi-ss~Grr 819 (850)
|.+++..+. +-.+.|.|.++.++|+++..++.+.+...-..+..+......+.++.+.+-...+ -+++ ...|..
T Consensus 2 ~~~i~~~d~----~~~~~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 76 (103)
T cd00130 2 PDGVIVLDL----DGRILYANPAAEQLLGYSPEELIGKSLLDLIHPEDREELRERLENLLSGGEPVTL-EVRLRRKDGSV 76 (103)
T ss_pred CceEEEECC----CCcEEEECHHHHHHhCCCHHHHcCccHHHhcCCccchHHHHHHHHHHhcCcCeEE-EEEEEccCCCE
Confidence 344444443 3568899999999999999999887765555555554445555555543222211 2222 333555
Q ss_pred EEEcceEEeEeecCCCCeeEEEEee
Q 003075 820 VSYEQAVAWKVLDDDDSNHCLAFMF 844 (850)
Q Consensus 820 f~i~~a~vW~l~d~~g~~~gqAa~F 844 (850)
.++. ..+-.+.+.+|...+...++
T Consensus 77 ~~~~-~~~~~~~~~~~~~~~~~~~~ 100 (103)
T cd00130 77 IWVL-VSLTPIRDEGGEVIGLLGVV 100 (103)
T ss_pred EEEE-EEEEEEecCCCCEEEEEEEE
Confidence 5543 23333455666666655544
No 78
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=92.13 E-value=0.58 Score=52.77 Aligned_cols=110 Identities=13% Similarity=0.003 Sum_probs=69.4
Q ss_pred HHHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCe
Q 003075 732 ALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGG 810 (850)
Q Consensus 732 ~~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~G 810 (850)
+.++.+.. .|++|+..+.+ ..+.|.|.++.++|+++-+++++.+...-..+....+....+.+....|-.....-
T Consensus 4 ~~~~~i~~~~~~~i~~~d~~----g~~~~~N~~~~~~~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (494)
T TIGR02938 4 EAYRQTVDQAPLAISITDLK----ANILYANDAFTRITGYTKEEIIGKNESVLSNHTTPPEVYQALWGSLAEQKPWAGKL 79 (494)
T ss_pred HHHHHHHHhCCceEEEECCC----CcEEEEchhheeecCCCHHHHhCCCchhhcCCCCCHHHHHHHHHHHHhCCccccee
Confidence 34555554 67777776654 78999999999999999999998764433333222222223333333332223333
Q ss_pred eEEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003075 811 MCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 811 vRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
.+..+.|+.++.+ ..+-.+.|++|...|.-.++.+
T Consensus 80 ~~~~~~g~~~~~~-~~~~~~~~~~g~~~~~~~~~~D 114 (494)
T TIGR02938 80 LNRRKDGELYLAE-LTVAPVLNEAGETTHFLGMHRD 114 (494)
T ss_pred eccCCCccchhhh-eeeEEEECCCCCEEEEEEehhh
Confidence 4466788888764 3445677889998887666543
No 79
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=90.67 E-value=16 Score=37.17 Aligned_cols=57 Identities=18% Similarity=0.325 Sum_probs=42.3
Q ss_pred CCCCCccccccCCCcceEEEEecCCCCCCCCCCccCCCCCCceeEEEeeecccccCChHHHHHHHhh--hhcccccc
Q 003075 415 FLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HRSEWADY 489 (850)
Q Consensus 415 s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~lf~FLRd--~R~eWd~~ 489 (850)
|++-+|..... .++|+|..++.. + . .+..-+++..+ +.||+.+++++.| +|.+||..
T Consensus 14 ~~~~~W~~~~~--~~~v~v~~~~~~----~-~----------~~~~~k~~~~i-~~s~e~v~~vi~d~e~~~~w~~~ 72 (195)
T cd08876 14 APDGDWQLVKD--KDGIKVYTRDVE----G-S----------PLKEFKAVAEV-DASIEAFLALLRDTESYPQWMPN 72 (195)
T ss_pred CCCCCCEEEec--CCCeEEEEEECC----C-C----------CeEEEEEEEEE-eCCHHHHHHHHhhhHhHHHHHhh
Confidence 44555987753 479999988763 1 1 23455667778 7999999999998 89999973
No 80
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=90.47 E-value=0.32 Score=51.20 Aligned_cols=109 Identities=17% Similarity=0.128 Sum_probs=80.6
Q ss_pred cchhhcCC--cceeeeeccCCCccHHHHHHHhhcccccccccceeeEEee-ccccCC-CcEEEEEeecCCCCCCCCCC-C
Q 003075 236 PSWFRDCR--CLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRY-STSLED-GSLVVCERSLTSSTGGPTGP-P 310 (850)
Q Consensus 236 ~~W~~~f~--~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRy-ckq~~~-G~waVvDvSld~~~~~~~~~-~ 310 (850)
.+|...+- .+++++....+.++...+.|.+..+|-| +..|||..+.. +...+. ..++|+..+++.. ..| .
T Consensus 66 ~~~i~~v~~~~~~~l~~~~~~~~~~~~v~~~~~~~P~P-l~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~----~~p~~ 140 (208)
T cd08864 66 KEYVHEIGAYDLEPVEVDGEGDGVVTYLVQLTYKFPFP-LSPRVFNELVHIKSDLDPASEFMVVSLPITPP----LVESL 140 (208)
T ss_pred hhchhhhccceeEEeeecCCCccceEEEEEEEEECCCC-CCCcEEEEEEEeeccCCCCCeEEEEEEEecCC----cCCcc
Confidence 47887777 6888888776655555667777788888 89999999999 666652 5779999998743 222 3
Q ss_pred CCccccccccccceeeeecCC---CceEEEEEEeeeccCC-Ccc
Q 003075 311 PSSFVRAEMLASGFLIRPCEG---GGSIIHIVDHVDLDAW-SVP 350 (850)
Q Consensus 311 ~~~f~r~~rlPSGclIq~~~n---G~skVtwVeH~e~d~~-~v~ 350 (850)
...++|.+ -=||..|+..+. |-..|+|.==...|+. .||
T Consensus 141 ~~~~Vr~~-y~SgE~~~~~p~~~~~~~~vew~maT~sDpGG~IP 183 (208)
T cd08864 141 YENAVLGR-YASVEKISYLPDADGKSNKVEWIMATRSDAGGNIP 183 (208)
T ss_pred CCCcEEEE-EEEEEEEEEcCccCCCcCCEEEEEEEeeCCCCcCc
Confidence 35788888 679999998875 4789999983344555 466
No 81
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=90.38 E-value=18 Score=35.82 Aligned_cols=126 Identities=18% Similarity=0.285 Sum_probs=72.7
Q ss_pred CCccccccCCCcceEEEEecCCCCCCCCCCccCCCCCCceeEEEeeecccccCChHHHHHHHhh--hhcccccccccchh
Q 003075 418 DGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HRSEWADYGVDAYS 495 (850)
Q Consensus 418 ~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~lf~FLRd--~R~eWd~~~~d~~s 495 (850)
++|..+.. .++|+|..++..+ . .+...++..-+ +.|+..|+++|.| .|.+||.. +.
T Consensus 15 ~~W~~~~~--~~~v~vy~~~~~~-----~----------~~~~~k~~~~i-~~~~~~v~~~l~d~~~~~~w~~~----~~ 72 (193)
T cd00177 15 EGWKLVKE--KDGVKIYTKPYED-----S----------GLKLLKAEGVI-PASPEQVFELLMDIDLRKKWDKN----FE 72 (193)
T ss_pred CCeEEEEE--CCcEEEEEecCCC-----C----------CceeEEEEEEE-CCCHHHHHHHHhCCchhhchhhc----ce
Confidence 58998753 3488988777642 1 22445556677 6899999999996 89999963 11
Q ss_pred hhhhccCCCCCCCCCCCCCCCcceEeeccccCCCCceEEEEEecCCCCCccccccccceEeEeeccCcCCCCCCceeEEE
Q 003075 496 AACLKASPYAVPCARPGGFPSSHVILPLAHTVEHEEFLEVVRLEGHAFSPEDVALARDMYLLQLCSGIDENTVGACAQLV 575 (850)
Q Consensus 496 ~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~s~~~liLQe~~~~De~~~Gs~s~vV 575 (850)
...++..+.. +..|--.+....-+ +-+|+++++..+ ..++ .|. -+++
T Consensus 73 --------------------~~~vl~~~~~----~~~i~~~~~~~p~p-----~~~Rdfv~~~~~-~~~~--~~~-~~~~ 119 (193)
T cd00177 73 --------------------EFEVIEEIDE----HTDIIYYKTKPPWP-----VSPRDFVYLRRR-RKLD--DGT-YVIV 119 (193)
T ss_pred --------------------EEEEEEEeCC----CeEEEEEEeeCCCc-----cCCccEEEEEEE-EEcC--CCe-EEEE
Confidence 0223333321 12333333332211 456789988875 3442 343 4667
Q ss_pred eecccCCC-C---CC--CccccCceEEec
Q 003075 576 FAPIDESF-A---DD--APLLASGFRVIP 598 (850)
Q Consensus 576 yAPvD~~d-s---~~--v~LLPSGF~I~P 598 (850)
..+||... | +. ..++++||.|-|
T Consensus 120 ~~Si~~~~~p~~~~~vR~~~~~~~~~i~~ 148 (193)
T cd00177 120 SKSVDHDSHPKEKGYVRAEIKLSGWIIEP 148 (193)
T ss_pred EeecCCCCCCCCCCcEEEEEEccEEEEEE
Confidence 77776641 1 22 224566666666
No 82
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=90.31 E-value=13 Score=38.95 Aligned_cols=66 Identities=21% Similarity=0.428 Sum_probs=51.9
Q ss_pred HHHHHhhhccCCCCCCccccccCCCcceEEEEecCCCCCCCCCCccCCCCCCceeEEEeeecccccCChHHHHHHHhh--
Q 003075 404 LSRGFNDAINGFLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE-- 481 (850)
Q Consensus 404 M~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~lf~FLRd-- 481 (850)
+++.|...+.. .++|.... ..++|+|..|...+ +.+++-++-..+ +.|+..++.+|+|
T Consensus 10 ~~~~~~~~l~~--~~~W~~~~--~~~~i~v~~r~~~~---------------~~~~~~k~e~~i-~~~~~~~~~vl~d~~ 69 (215)
T cd08877 10 IMQENLKDLDE--SDGWTLQK--ESEGIRVYYKFEPD---------------GSLLSLRMEGEI-DGPLFNLLALLNEVE 69 (215)
T ss_pred HHHHHHhcccC--CCCcEEec--cCCCeEEEEEeCCC---------------CCEEEEEEEEEe-cCChhHeEEEEehhh
Confidence 44556666655 77899874 34799999988742 237889999999 7899999999998
Q ss_pred hhcccccc
Q 003075 482 HRSEWADY 489 (850)
Q Consensus 482 ~R~eWd~~ 489 (850)
.+.+|+.+
T Consensus 70 ~~~~W~p~ 77 (215)
T cd08877 70 LYKTWVPF 77 (215)
T ss_pred hHhhhccc
Confidence 89999974
No 83
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=90.25 E-value=1.2 Score=38.05 Aligned_cols=45 Identities=27% Similarity=0.412 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 003075 73 RCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYEN 117 (850)
Q Consensus 73 Rak~Krkq~~~~l~~~n~~l~aen~~l~ee~~~l~~e~~~L~~En 117 (850)
++|.|++..-..++.....|..+|..|++++..+..+...|..+|
T Consensus 19 ~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 19 RSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 566677777777777777777777777777777777777776665
No 84
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR. This model represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor. These proteins contain a Helix-Turn_Helix motif of the "fis" type (pfam02954).
Probab=90.16 E-value=2.2 Score=48.92 Aligned_cols=84 Identities=14% Similarity=0.134 Sum_probs=62.6
Q ss_pred HHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCee
Q 003075 733 LLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGM 811 (850)
Q Consensus 733 ~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~Gv 811 (850)
.++.++. .|++|+..+.. +-.+.|.|.++.+||+|+.+++++.+...-..+.++......+.+...+|....+ =+
T Consensus 134 r~~~l~e~~~~~i~~~d~~---~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~-~~ 209 (442)
T TIGR02040 134 RYRVVLEVSSDAVLLVDMS---TGRIVEANSAAAALLGGVGQSLVGRAFPQEFEGRRREELMLTLRNVRATGSAAPV-RI 209 (442)
T ss_pred HHHHHHhhCCceEEEEECC---CCEEEEEcHHHHHHhCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCCcce-EE
Confidence 4555554 67888877654 5689999999999999999999999877667777788788888888888875433 24
Q ss_pred EEcCCCCeE
Q 003075 812 CVSSMGRAV 820 (850)
Q Consensus 812 Riss~Grrf 820 (850)
+....|.++
T Consensus 210 ~~~~~~~~~ 218 (442)
T TIGR02040 210 LLRRSQKRL 218 (442)
T ss_pred EEcCCCeEE
Confidence 444455444
No 85
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=89.68 E-value=7.3 Score=38.28 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=28.6
Q ss_pred cccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHH
Q 003075 21 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCR 75 (850)
Q Consensus 21 R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak 75 (850)
-.+||.+++..+ .-.+|-++| -|++...|--|=|-||+-
T Consensus 21 ~d~lsDd~Lvsm-------------SVReLNr~L---rG~~reEVvrlKQrRRTL 59 (135)
T KOG4196|consen 21 GDRLSDDELVSM-------------SVRELNRHL---RGLSREEVVRLKQRRRTL 59 (135)
T ss_pred CCCcCHHHHHHh-------------hHHHHHHHh---cCCCHHHHHHHHHHHHHH
Confidence 367888888776 233455555 289999999999999874
No 86
>smart00340 HALZ homeobox associated leucin zipper.
Probab=89.64 E-value=0.6 Score=37.11 Aligned_cols=27 Identities=41% Similarity=0.372 Sum_probs=23.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 003075 91 KLSAMNKLLMEENDRLQKQVSHLVYEN 117 (850)
Q Consensus 91 ~l~aen~~l~ee~~~l~~e~~~L~~En 117 (850)
-|+.+++.+.+||+++++|+++||...
T Consensus 9 ~LKrcce~LteeNrRL~ke~~eLralk 35 (44)
T smart00340 9 LLKRCCESLTEENRRLQKEVQELRALK 35 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 488999999999999999999988643
No 87
>PRK13558 bacterio-opsin activator; Provisional
Probab=89.42 E-value=2.7 Score=50.81 Aligned_cols=106 Identities=8% Similarity=-0.071 Sum_probs=75.4
Q ss_pred cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEEcCCCC
Q 003075 739 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGR 818 (850)
Q Consensus 739 ~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Gr 818 (850)
+.|..|...+.. ..+..+.|.|.+..++|+++-+++.+.+...-..+..+.++...+.+..+.|-.....-....+.|.
T Consensus 156 ~~~~gi~~~d~~-~~dg~i~~~N~~~~~l~G~~~eel~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~ 234 (665)
T PRK13558 156 EAPVGITIADAT-LPDEPLIYINDAFERITGYSPDEVLGRNCRFLQGEDTNEERVAELREAIDEERPTSVELRNYRKDGS 234 (665)
T ss_pred cCCccEEEEcCC-CCCCcEEEEcHHHHHHhCcCHHHHcCCCHHHhcCCCccHHHHHHHHHHHhcCCCeEEEEEEECCCCC
Confidence 467777776643 2578899999999999999999999988776666666666666666666666543333334567888
Q ss_pred eEEEcceEEeEeecCCCCeeEEEEeecC
Q 003075 819 AVSYEQAVAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 819 rf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
.++++ ..+=.+.|++|...|...++.+
T Consensus 235 ~~~~~-~~~~pi~d~~G~~~~~vgi~~D 261 (665)
T PRK13558 235 TFWNQ-VDIAPIRDEDGTVTHYVGFQTD 261 (665)
T ss_pred EEEEE-EEEEEEECCCCCEEEEEEEEEe
Confidence 88764 2333567889998887776654
No 88
>PRK13560 hypothetical protein; Provisional
Probab=89.36 E-value=2.3 Score=51.71 Aligned_cols=109 Identities=10% Similarity=-0.043 Sum_probs=70.9
Q ss_pred HHHHh-cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeE
Q 003075 734 LKQLW-HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMC 812 (850)
Q Consensus 734 ~~~L~-~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 812 (850)
++.++ +.|++|+..+. |=.+.|.|+++.++|+|+-+|+.+.+..--..+...+..+.........|-...+.-..
T Consensus 206 l~~l~e~~~~~i~~~d~----~g~i~~~N~~~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 281 (807)
T PRK13560 206 LQQLLDNIADPAFWKDE----DAKVFGCNDAACLACGFRREEIIGMSIHDFAPAQPADDYQEADAAKFDADGSQIIEAEF 281 (807)
T ss_pred HHHHHhhCCCeEEEEcC----CCCEEEEhHHHHHHhCCCHHHHcCCcchhcCCcchhHHHHHHHHHHhccCCceEEEEEE
Confidence 44444 46777776654 46899999999999999999999988766554444344434444444444333444556
Q ss_pred EcCCCCeEEEcce-EEeEeecCCCCeeEEEEeecC
Q 003075 813 VSSMGRAVSYEQA-VAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 813 iss~Grrf~i~~a-~vW~l~d~~g~~~gqAa~F~~ 846 (850)
..+.|+.++++-. ..-.+.|++|...|...++.+
T Consensus 282 ~~~dG~~~~~~~~~~~~~~~~~~g~~~g~~~~~~D 316 (807)
T PRK13560 282 QNKDGRTRPVDVIFNHAEFDDKENHCAGLVGAITD 316 (807)
T ss_pred EcCCCCEEEEEEEecceEEEcCCCCEEEEEEEEEe
Confidence 6788988855321 122345888888887766643
No 89
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=88.91 E-value=27 Score=36.29 Aligned_cols=56 Identities=25% Similarity=0.393 Sum_probs=38.7
Q ss_pred CCCCccccccCCCcceEEEEecCCCCCCCCCCccCCCCCCceeEEEeeecccccCChHHHHHHHh-h--hhcccccc
Q 003075 416 LDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLR-E--HRSEWADY 489 (850)
Q Consensus 416 ~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~lf~FLR-d--~R~eWd~~ 489 (850)
...+|.... +..++|.|.++... + . +-+ .++...+ ++||..||++|- | .|.+||..
T Consensus 22 ~~~~W~l~~-~~~~~i~i~~r~~~----~-~---------~~~--~k~~~~i-~~~~~~v~~~l~~d~~~~~~Wd~~ 80 (208)
T cd08868 22 TDPGWKLEK-NTTWGDVVYSRNVP----G-V---------GKV--FRLTGVL-DCPAEFLYNELVLNVESLPSWNPT 80 (208)
T ss_pred cCCCceEEE-ecCCCCEEEEEEcC----C-C---------ceE--EEEEEEE-cCCHHHHHHHHHcCccccceecCc
Confidence 345998764 33348999998864 1 1 223 4445667 899999998765 4 89999973
No 90
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR. This model represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor. These proteins contain a Helix-Turn_Helix motif of the "fis" type (pfam02954).
Probab=88.46 E-value=2.3 Score=48.82 Aligned_cols=95 Identities=22% Similarity=0.285 Sum_probs=68.5
Q ss_pred HHHHh-cCCCeEeecCCCCCCCCeeEcccHHHHHhhccC-HHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCee
Q 003075 734 LKQLW-HHSDAIMCCSLKTNASPVFTFANQAGLDMLETT-LVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGM 811 (850)
Q Consensus 734 ~~~L~-~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~-w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~Gv 811 (850)
++.++ ..|++|+..+.+ =.++|+|.|+.+||+|+ -+++++.+...-.. ....+...++..+.+.|....|...
T Consensus 254 ~~~l~e~~~d~I~v~D~~----G~I~~~N~a~~~l~G~~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~ 328 (442)
T TIGR02040 254 LARLYHEAPDAIVFSDAD----GTIRGANEAFLELTDSSSLEAVRGRTLDRWLG-RGGVDLRVLLSNVRRTGQVRLYATT 328 (442)
T ss_pred HHHHHHhCCceEEEEcCC----CcEEehhHHHHHHhCCCChHHHcCCCHHHHhC-CCcccHHHHHHHHhhcCceEEEEEE
Confidence 44444 488898887765 47899999999999997 57899987542221 2233457778888889988888877
Q ss_pred EEcCCCCeEEEcceEEeEeecCCC
Q 003075 812 CVSSMGRAVSYEQAVAWKVLDDDD 835 (850)
Q Consensus 812 Riss~Grrf~i~~a~vW~l~d~~g 835 (850)
-..+.|+.++++ +-...+.+++
T Consensus 329 ~~~~~G~~~~ve--~s~~~i~~~~ 350 (442)
T TIGR02040 329 LTGEFGAQTEVE--ISAAWVDQGE 350 (442)
T ss_pred EEcCCCCEEEEE--EEEEEeccCC
Confidence 789999999996 3334444433
No 91
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=87.86 E-value=3.6 Score=43.33 Aligned_cols=55 Identities=22% Similarity=0.338 Sum_probs=39.3
Q ss_pred CCCCCccccccCCCcceEEEEecCCCCCCCCCCccCCCCCCceeEEEeeecccccCChHHHHHHHhh--hhccccc
Q 003075 415 FLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HRSEWAD 488 (850)
Q Consensus 415 s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~lf~FLRd--~R~eWd~ 488 (850)
-..++|. +. ...++|+|.++... + . .-++++. +-+ ++||+.|+++|.| .|.+||.
T Consensus 19 ~~~~gW~-l~-~~~~gI~Vy~k~~~----~-~--------~~~~~ge---~~v-~as~~~v~~ll~D~~~r~~Wd~ 75 (205)
T cd08874 19 QATAGWS-YQ-CLEKDVVIYYKVFN----G-T--------YHGFLGA---GVI-KAPLATVWKAVKDPRTRFLYDT 75 (205)
T ss_pred hccCCcE-EE-ecCCCEEEEEecCC----C-C--------cceEEEE---EEE-cCCHHHHHHHHhCcchhhhhHH
Confidence 4677994 43 33588999987643 2 2 1245543 345 8999999999998 8999997
No 92
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=87.22 E-value=0.91 Score=48.15 Aligned_cols=158 Identities=22% Similarity=0.298 Sum_probs=101.9
Q ss_pred HHHHHHHHHhcCCCCceEecCCCCCCCCcccc-eeccCCCcceeeeeeeEEeeChhhHHHHhcCc---cchhhcCCccee
Q 003075 172 ETLAEFLSKATGTAVDWVQMIGMKPGPDSIGI-VAVSRNCSGVAARACGLVSLDPTKIAEILKDC---PSWFRDCRCLDV 247 (850)
Q Consensus 172 ~am~Ell~la~~~~plWi~~~g~~~g~~~~~~-~~~~~~~~~eASR~~glV~m~~~~LVe~lmD~---~~W~~~f~~~~~ 247 (850)
.+.+++=..|...+.-|..+...+ ++-...+ .|. .|...-=+| +-+=.+.|..+-++|+|. .+|=.+--.+++
T Consensus 15 ~~~~~~e~~~~~~~~~We~~~~k~-~~~i~~q~~~~-~g~~~Yk~~-~vfeDvtp~~~~Dv~~D~eYRkkWD~~vi~~e~ 91 (219)
T KOG2761|consen 15 ELLDLLEEKACDAGQGWELVMDKS-TPSIWRQRRPK-TGLYEYKSR-TVFEDVTPEIVRDVQWDDEYRKKWDDMVIELET 91 (219)
T ss_pred HHHHhhcccccCcccchhhhcccC-CceEEEEcccC-CCCEEEEEE-EEEcCCCHHHHHHHHhhhHHHHHHHHHhhhhee
Confidence 344444445566788898875422 2221111 111 111000111 112345788999999995 688888888899
Q ss_pred eeecc-CCCccHHHHHHHhhcccccccccceeeEEeeccccCCCcEEEEEeecCCCCCCCCCCCCCccccccccccceee
Q 003075 248 LSVIP-TGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFLI 326 (850)
Q Consensus 248 l~~~~-~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~f~r~~rlPSGclI 326 (850)
|+..+ +| + +++|-+++.|.|+- .||+-++|---+.++-.-.||-.|+.. +..|+...++|..-.=||.+|
T Consensus 92 ie~d~~tg---~-~vv~w~~kfP~p~~-~RdYV~~Rr~~~~~~k~~~i~s~~v~h----~s~P~~~~~vRv~~~~s~~~I 162 (219)
T KOG2761|consen 92 IEEDPVTG---T-EVVYWVKKFPFPMS-NRDYVYVRRWWESDEKDYYIVSKSVQH----PSYPPLKKKVRVTVYRSGWLI 162 (219)
T ss_pred eeecCCCC---c-eEEEEEEeCCcccC-CccEEEEEEEEecCCceEEEEEecccC----CCcCCcCCcEEEEEEEEEEEE
Confidence 88877 43 2 56778888998875 599999987777776777888887763 445556667888889999999
Q ss_pred e-----ecCCC-ceEEEEEEe
Q 003075 327 R-----PCEGG-GSIIHIVDH 341 (850)
Q Consensus 327 q-----~~~nG-~skVtwVeH 341 (850)
| +=++| .|.++|++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~ 183 (219)
T KOG2761|consen 163 RVESRSGDEQGCACEYLYFHN 183 (219)
T ss_pred EcccccCCCCccEEEEEEEEC
Confidence 9 54555 345556554
No 93
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=86.99 E-value=45 Score=35.34 Aligned_cols=54 Identities=20% Similarity=0.460 Sum_probs=34.8
Q ss_pred CCccccccCCCcceEEEEecCCCCCCCCCCccCCCCCCceeEEEeeecccccCChHHHHHHHhhhhccccc
Q 003075 418 DGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLREHRSEWAD 488 (850)
Q Consensus 418 ~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~lf~FLRd~R~eWd~ 488 (850)
.+|..+. ..+++.+..+|..+ + + | +=--++++=+ +.||..|+..+-+.|.+||.
T Consensus 27 k~w~~~~--~~~~~e~~ykK~~d---~-~-------~---lk~~r~~~ei-~~~p~~VL~~vl~~R~~WD~ 80 (205)
T cd08909 27 KGWISCS--SSDNTELAYKKVGD---G-N-------P---LRLWKVSVEV-EAPPSVVLNRVLRERHLWDE 80 (205)
T ss_pred cCCcccC--CcCCeEEEEecCCC---C-C-------c---eEEEEEEEEe-CCCHHHHHHHHHhhHhhHHh
Confidence 4777764 35788899888642 2 2 1 2234457788 66666665555447999996
No 94
>PF13188 PAS_8: PAS domain; PDB: 2JHE_D 3VOL_A.
Probab=86.01 E-value=0.94 Score=37.53 Aligned_cols=40 Identities=15% Similarity=0.247 Sum_probs=30.1
Q ss_pred HHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccc
Q 003075 733 LLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIML 780 (850)
Q Consensus 733 ~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lps 780 (850)
.++.+++ .|.+|+..+ . . +++|+|+++.+||+++ ..+.+.
T Consensus 2 ~~~~l~~~~~~~i~i~d-~--~--~i~~~N~~~~~l~g~~---~~~~~~ 42 (64)
T PF13188_consen 2 RYRSLFDNSPDGILIID-G--G--RIIYVNPAFEELFGYS---LEGEDI 42 (64)
T ss_dssp HHHHHHCCSSSEEEEEE-T--S--BEEEE-HHHHHHHCS----HTCCCH
T ss_pred HHHHHHHcCccceEEEE-C--C--ChHHhhHHHHHHhCCC---CCCCCH
Confidence 4667765 889999988 7 3 9999999999999999 444444
No 95
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=85.10 E-value=5.8 Score=42.65 Aligned_cols=164 Identities=16% Similarity=0.186 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCccccccCCC-----cceEEEEecCCCCCCCCCCccCCCCCCc-eeEEEeeeccccc
Q 003075 396 VLRTFSQRLSRGFNDAINGFLDDGWSLLSSDGG-----EDVTVAINSSPNKFLGSQYNWSMLPAFG-GVLCAKASMLLQN 469 (850)
Q Consensus 396 sl~~LaqRM~~~F~~~v~~s~~~~W~~l~~~g~-----~dVrv~~r~~~~~~~~~~~~~~g~~~~g-~Vl~A~tS~~L~p 469 (850)
-|+.||..-+..|-. +.-...--|.+..+.+. |....+..+.. +.. |+| .+..+-++-+. +
T Consensus 3 ~~~~lA~~am~Ell~-~a~~~~plWi~~~~~~~~~l~~dey~~~f~~~~----~~~-------~~~~~~eASR~~glV-~ 69 (229)
T cd08875 3 GLLELAEEAMDELLK-LAQGGEPLWIKSPGMKPEILNPDEYERMFPRHG----GSK-------PGGFTTEASRACGLV-M 69 (229)
T ss_pred HHHHHHHHHHHHHHH-HhccCCCCceecCCCCccccCHHHHhhcccCcC----CCC-------CCCCeEEEEeeeEEE-e
Confidence 588999999999884 44455678988765432 22211111111 111 234 67888888888 7
Q ss_pred CChHHHHHHHhhhhccccc-ccccchhhhhhccCCCCCCCCCCCCCCCcceEeeccccCCCCceEEEEEecCCCCCcccc
Q 003075 470 VPPALLVRFLREHRSEWAD-YGVDAYSAACLKASPYAVPCARPGGFPSSHVILPLAHTVEHEEFLEVVRLEGHAFSPEDV 548 (850)
Q Consensus 470 vpp~~lf~FLRd~R~eWd~-~~~d~~s~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~ 548 (850)
+.|..|.+.|.|. .+|.. |..++-.+..++....+..| ..+..+.|+..+-+-++ --
T Consensus 70 m~~~~lVe~lmD~-~kW~~~Fp~iv~~a~tl~vistg~~g-------------------~~~G~lqlmyael~~pS--pL 127 (229)
T cd08875 70 MNAIKLVEILMDV-NKWSELFPGIVSKAKTLQVISTGNGG-------------------NRNGTLQLMYAELQVPS--PL 127 (229)
T ss_pred cCHHHHHHHHhCh-hhhhhhhhhhcceeeEEEEeeCCCCC-------------------CCCceehhhhhhcccCc--cc
Confidence 9999999999993 23443 22222222222222222222 22336666666543322 34
Q ss_pred ccccceEeEeeccCcCCCCCCceeEEEe-ecccCC----CCC---CCccccCceEEecC
Q 003075 549 ALARDMYLLQLCSGIDENTVGACAQLVF-APIDES----FAD---DAPLLASGFRVIPL 599 (850)
Q Consensus 549 ~~s~~~liLQe~~~~De~~~Gs~s~vVy-APvD~~----ds~---~v~LLPSGF~I~P~ 599 (850)
+..|+..+|.-|.-.+ .| +.+|- =.+|.. .+. .--.+||||-|-|+
T Consensus 128 Vp~Re~~fLRyc~~l~---dG--~w~VvdvSld~~~~~p~~~~~~r~~~~PSGcLIq~~ 181 (229)
T cd08875 128 VPTREFYFLRYCKQLE---DG--LWAVVDVSIDGVQTAPPPASFVRCRRLPSGCLIQDM 181 (229)
T ss_pred ccCCeEEEEEEEEEeC---CC--eEEEEEEeecccccCCCCCCccEEEEecCcEEEEEC
Confidence 6678999999886444 35 34442 244432 112 12489999999993
No 96
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=84.33 E-value=58 Score=34.26 Aligned_cols=70 Identities=11% Similarity=0.227 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhhccCCCCCCccccccCCCcceEEEEecCCCCCCCCCCccCCCCCCceeEEEeeecccccCChHHHHH-
Q 003075 399 TFSQRLSRGFNDAINGFLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVR- 477 (850)
Q Consensus 399 ~LaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~lf~- 477 (850)
+.++-=+..|..-+.. .++|..-. +..++|+|.+++.. + . | .+-+.-+-+ ++||+.||+
T Consensus 8 ~~~~~~~~~~~~~l~~--~~~W~l~~-~~~~gi~V~s~~~~----~-~---------~--~~fk~~~~v-~~~~~~l~~~ 67 (209)
T cd08906 8 RQGKEALAVVEQILAQ--EENWKFEK-NNDNGDTVYTLEVP----F-H---------G--KTFILKAFM-QCPAELVYQE 67 (209)
T ss_pred HHHHHHHHHHHHHhhc--ccCCEEEE-ecCCCCEEEEeccC----C-C---------C--cEEEEEEEE-cCCHHHHHHH
Confidence 3444444455544433 45898542 33578999987653 1 1 2 333666777 799999985
Q ss_pred HHhh--hhccccc
Q 003075 478 FLRE--HRSEWAD 488 (850)
Q Consensus 478 FLRd--~R~eWd~ 488 (850)
.|.| .|.+||.
T Consensus 68 ll~D~~~~~~W~~ 80 (209)
T cd08906 68 VILQPEKMVLWNK 80 (209)
T ss_pred HHhChhhccccCc
Confidence 5677 8999996
No 97
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=83.96 E-value=3.3 Score=45.26 Aligned_cols=91 Identities=15% Similarity=0.111 Sum_probs=62.7
Q ss_pred HHHHhcCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEE
Q 003075 734 LKQLWHHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCV 813 (850)
Q Consensus 734 ~~~L~~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRi 813 (850)
.+.|-+.|.+|+..+.+ -.++|.|++|.++|+++.+++.+.|..--..+.. .+.. .+.++.+.|-...+..+++
T Consensus 10 ~~il~~~~~gi~~~d~~----~~i~~~N~a~~~~~g~~~~~~~g~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~ 83 (348)
T PRK11073 10 GQILNSLINSILLLDDD----LAIHYANPAAQQLLAQSSRKLFGTPLPELLSYFS-LNIE-LMRESLQAGQGFTDNEVTL 83 (348)
T ss_pred HHHHhcCcCeEEEECCC----CeEeeEcHHHHHHhCCCHHHHcCCCHHHHcCcch-hhHH-HHHHHHHcCCcccccceEE
Confidence 34445688888887654 6999999999999999999999998765554322 2222 3345555554445567888
Q ss_pred cCCCCeEEEcceEEeEeec
Q 003075 814 SSMGRAVSYEQAVAWKVLD 832 (850)
Q Consensus 814 ss~Grrf~i~~a~vW~l~d 832 (850)
.+.|+.++++ +.+..+.
T Consensus 84 ~~~g~~~~~~--~~~~~~~ 100 (348)
T PRK11073 84 VIDGRSHILS--LTAQRLP 100 (348)
T ss_pred EECCceEEEE--EEEEEcc
Confidence 8899888763 3444444
No 98
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=83.81 E-value=6.7 Score=48.09 Aligned_cols=102 Identities=10% Similarity=-0.001 Sum_probs=69.3
Q ss_pred CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhccccccc-CChhcHHHHHHHHHHHHHhccccCCCeeEEcCCCC
Q 003075 740 HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKI-LDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGR 818 (850)
Q Consensus 740 ~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~s-ae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Gr 818 (850)
.|.+|+..+. +-.++|.|+++.++|+++.+++.+.+...- ..+....+....+.+....+-.....-....+.|+
T Consensus 145 ~~~~i~~~d~----~g~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~ 220 (799)
T PRK11359 145 LDRPVIVLDP----ERRIVQCNRAFTEMFGYCISEASGMQPDTLLNIPEFPADNRIRLQQLLWKTARDQDEFLLLTRTGE 220 (799)
T ss_pred CCCcEEEEcC----CCcEEEEChhhHhhhCCCHHHHCCCChHHhcCCCCCcHHHHHHHHHhhccCCCCcceeEEeCCCCC
Confidence 5566655443 578999999999999999999999865432 22333344444555555555444334455678899
Q ss_pred eEEEcceEEeEeecCCCCeeEEEEeecC
Q 003075 819 AVSYEQAVAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 819 rf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
.+++. ..+-.+.|++|...|...++.+
T Consensus 221 ~~~~~-~~~~~v~d~~g~~~~~~~~~~D 247 (799)
T PRK11359 221 KIWIK-ASISPVYDVLAHLQNLVMTFSD 247 (799)
T ss_pred EEEEE-eeeeeeecCCCceeEEEEEeeh
Confidence 88874 4556678889998887777654
No 99
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=83.25 E-value=20 Score=36.56 Aligned_cols=130 Identities=18% Similarity=0.193 Sum_probs=71.2
Q ss_pred CCCccccccCCCcceEEEEecCCCCCCCCCCccCCCCCCceeEEEeeecccccCChHH-HHHHHhh--hhcccccccccc
Q 003075 417 DDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPAL-LVRFLRE--HRSEWADYGVDA 493 (850)
Q Consensus 417 ~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~-lf~FLRd--~R~eWd~~~~d~ 493 (850)
.++|..... +.+++.+..+... ++ ..+-..++...+ +.+++. +.++|.| .|.+||.. +
T Consensus 18 ~~~W~~~~~-~~~~~~~~~~~~~----~~----------~~~~~~k~~~~v-~~~~~~~~~~~~~d~~~r~~Wd~~---~ 78 (206)
T smart00234 18 EPGWVLSSE-NENGDEVRSILSP----GR----------SPGEASRAVGVV-PMVCADLVEELMDDLRYRPEWDKN---V 78 (206)
T ss_pred CCccEEccc-cCCcceEEEEccC----CC----------CceEEEEEEEEE-ecChHHHHHHHHhcccchhhCchh---c
Confidence 468998753 2344444444332 21 135677788888 678875 6678887 79999973 1
Q ss_pred hhhhhhccCCCCCCCCCCCCCCCcceEeeccccCCCCceEEEEEecCCCCCccccccccceEeEeeccCcCCCCCCceeE
Q 003075 494 YSAACLKASPYAVPCARPGGFPSSHVILPLAHTVEHEEFLEVVRLEGHAFSPEDVALARDMYLLQLCSGIDENTVGACAQ 573 (850)
Q Consensus 494 ~s~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~s~~~liLQe~~~~De~~~Gs~s~ 573 (850)
. ..+.+-.+. .++.|........- ..+-.||..++.-+. .| ..|+ +
T Consensus 79 ~---------------------~~~~ie~~~----~~~~i~~~~~~~~~----~p~~~RDfv~~r~~~-~~--~~~~--~ 124 (206)
T smart00234 79 A---------------------KAETLEVID----NGTVIYHYVSKFVA----GPVSPRDFVFVRYWR-EL--VDGS--Y 124 (206)
T ss_pred c---------------------cEEEEEEEC----CCCeEEEEEEeccc----CcCCCCeEEEEEEEE-Ec--CCCc--E
Confidence 1 123333332 22333333222211 134467888887753 33 3353 3
Q ss_pred EE-eecccCC----CCCC--CccccCceEEecC
Q 003075 574 LV-FAPIDES----FADD--APLLASGFRVIPL 599 (850)
Q Consensus 574 vV-yAPvD~~----ds~~--v~LLPSGF~I~P~ 599 (850)
+| ..-++-. .+.. +.++++||.|-|+
T Consensus 125 vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~ 157 (206)
T smart00234 125 AVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPL 157 (206)
T ss_pred EEEEEECCCCCCCCCCCceEEEEeceEEEEEEC
Confidence 33 3344443 2222 3589999999994
No 100
>PRK10060 RNase II stability modulator; Provisional
Probab=82.01 E-value=8.6 Score=47.05 Aligned_cols=97 Identities=8% Similarity=-0.011 Sum_probs=65.9
Q ss_pred HHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccc-cccCChhcHHHHHHHHHHHHHhccccCCCee
Q 003075 734 LKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIML-DKILDEAGRKILCTEFAKIMQQGFAYLPGGM 811 (850)
Q Consensus 734 ~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lps-r~sae~~~r~er~~lL~~v~~qG~~~~y~Gv 811 (850)
++.++. ++.+|+..+.. =.++|+|+++.++++|+-+|+.+.+. .+-..+.+.+...+.+..+.+.|-.......
T Consensus 113 ~~~v~~~~~~gI~i~D~~----g~I~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 188 (663)
T PRK10060 113 AEQVVSEANSVIVILDSR----GNIQRFNRLCEEYTGLKEHDVIGQSVFKLFMSRREAAASRRNIRGFFRSGNAYEVERW 188 (663)
T ss_pred HHHHHhhCCceEEEEeCC----CCEEEEcHHHHHHHCcCHHHHcCCCHHHHhCChhhHHHHHHHHHHHHhcCCceEEEEE
Confidence 444554 67777777655 47999999999999999999999886 4444555555556667777777754433444
Q ss_pred EEcCCCCeEEEcceEEeEeecCCCC
Q 003075 812 CVSSMGRAVSYEQAVAWKVLDDDDS 836 (850)
Q Consensus 812 Riss~Grrf~i~~a~vW~l~d~~g~ 836 (850)
-..+.|+++++..... +.+.+|.
T Consensus 189 ~~~~~G~~~~~~~~~~--~~~~~g~ 211 (663)
T PRK10060 189 IKTRKGQRLFLFRNKF--VHSGSGK 211 (663)
T ss_pred EEeCCCCEEEEEeeeE--EEcCCCC
Confidence 5678898887643321 3445554
No 101
>PRK09776 putative diguanylate cyclase; Provisional
Probab=81.26 E-value=6.9 Score=49.86 Aligned_cols=109 Identities=11% Similarity=0.037 Sum_probs=73.9
Q ss_pred HHHHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccC-C
Q 003075 731 DALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYL-P 808 (850)
Q Consensus 731 ~~~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~-y 808 (850)
++.++.+++ .|.+|+..+. |-.+.|.|+++.++++|+.+|+.+.+...-..|.+++.....+.++...+.... .
T Consensus 282 e~r~~~l~e~~~~~i~~~d~----dG~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 357 (1092)
T PRK09776 282 ETRFRNAMEYSAIGMALVGT----EGQWLQVNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLLSGEINSYSM 357 (1092)
T ss_pred HHHHHHHHHhCCceEEEEcC----CCcEEehhHHHHHHhCCCHHHHccCCceeccCcchhHhHHHHHHHHHcCCccceee
Confidence 445566655 7777776554 579999999999999999999999988766666666666666666665543221 1
Q ss_pred CeeEEcCCCCeEEEcceEEeEeecCCCCeeEEEEee
Q 003075 809 GGMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMF 844 (850)
Q Consensus 809 ~GvRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F 844 (850)
.-....+.|+.++++-... -+.|++|...|...++
T Consensus 358 e~~~~~~dG~~~~~~~~~~-~~~~~~g~~~~~i~~~ 392 (1092)
T PRK09776 358 EKRYYRRDGEVVWALLAVS-LVRDTDGTPLYFIAQI 392 (1092)
T ss_pred eeEEEcCCCCEEEEEEEEE-EEECCCCCEeeehhhH
Confidence 2234567888877754332 3457788877754433
No 102
>smart00338 BRLZ basic region leucin zipper.
Probab=81.15 E-value=5.8 Score=33.90 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=25.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003075 91 KLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (850)
Q Consensus 91 ~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~ 125 (850)
.|..+...+..+|..|..++..|+.|+..|++++.
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35555666777777777777888888888887764
No 103
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=80.94 E-value=76 Score=33.14 Aligned_cols=58 Identities=16% Similarity=0.346 Sum_probs=39.3
Q ss_pred CCCccccccCCCc--ceEEEEecCCCCCCCCCCccCCCCCCceeEEEeeecccccCChHHHHHHHhh--hhcccccc
Q 003075 417 DDGWSLLSSDGGE--DVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HRSEWADY 489 (850)
Q Consensus 417 ~~~W~~l~~~g~~--dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~lf~FLRd--~R~eWd~~ 489 (850)
+++|.......++ +|+|-.|+.. + . ++.--++...+.++||+.|+++|.| .|.+||..
T Consensus 21 ~~~W~~~~~k~~~~~~i~vy~r~~~----~-s----------~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~ 82 (209)
T cd08870 21 GQAWQQVMDKSTPDMSYQAWRRKPK----G-T----------GLYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDET 82 (209)
T ss_pred CCcceEhhhccCCCceEEEEecccC----C-C----------CceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhh
Confidence 3789987543322 2666555532 1 1 2334556667767899999999998 89999973
No 104
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=80.89 E-value=9.9 Score=32.91 Aligned_cols=82 Identities=7% Similarity=0.017 Sum_probs=56.3
Q ss_pred EcccHHHHHhhccCHHHHhccc----ccccCChhcHHHHHHHHHH-HHHhccccCCCeeEEcCCCCeEEEcceEEeEeec
Q 003075 758 TFANQAGLDMLETTLVALQDIM----LDKILDEAGRKILCTEFAK-IMQQGFAYLPGGMCVSSMGRAVSYEQAVAWKVLD 832 (850)
Q Consensus 758 ~YaN~aAL~l~e~~w~el~~lp----sr~sae~~~r~er~~lL~~-v~~qG~~~~y~GvRiss~Grrf~i~~a~vW~l~d 832 (850)
+|.|+...++|+|+-+++ +.+ +..-.-|.+|+.-.+.+.+ ..+.|-.....==.+.+.|+..+++. ..=-+.|
T Consensus 2 i~~s~~~~~i~G~~~~~~-~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~~~~e~R~~~~~G~~~wi~~-~~~~~~d 79 (91)
T PF08447_consen 2 IYWSDNFYEIFGYSPEEI-GKPDFEEWLERIHPDDRERVRQAIQQAALQNGEPFEIEYRIRRKDGEYRWIEV-RGRPIFD 79 (91)
T ss_dssp EEE-THHHHHHTS-HHHH-TCBEHHHHHHHB-TTTHHHHHHHHHHHHHHTT-EEEEEEEEEGTTSTEEEEEE-EEEEEET
T ss_pred EEEeHHHHHHhCCCHHHh-ccCCHHHHHhhcCHHHHHHHHHHHHHHhhccCcceEEEEEEECCCCCEEEEEE-EEEEEEC
Confidence 699999999999999999 767 5555567888888888888 56666444433334458888888854 4545568
Q ss_pred CCCCeeEEE
Q 003075 833 DDDSNHCLA 841 (850)
Q Consensus 833 ~~g~~~gqA 841 (850)
++|+..+..
T Consensus 80 ~~g~~~~~~ 88 (91)
T PF08447_consen 80 ENGKPIRII 88 (91)
T ss_dssp TTS-EEEEE
T ss_pred CCCCEEEEE
Confidence 999887654
No 105
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=80.85 E-value=78 Score=33.53 Aligned_cols=54 Identities=15% Similarity=0.295 Sum_probs=36.9
Q ss_pred CccccccCCCcceEEEEecCCCCCCCCCCccCCCCCCceeEEEeeecccccCChHHHHHHHhhhhcccccc
Q 003075 419 GWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLREHRSEWADY 489 (850)
Q Consensus 419 ~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~lf~FLRd~R~eWd~~ 489 (850)
+|..++ ..+.|.++.+|.. +| . .+.--++++-+ |.+|..|...|-|-|.+||..
T Consensus 28 ~w~~~~--~~~~~el~~~k~~---~g-s----------~l~~~r~~~~i-~a~~~~vl~~lld~~~~Wd~~ 81 (204)
T cd08908 28 GWVSYS--TSEQAELSYKKVS---EG-P----------PLRLWRTTIEV-PAAPEEILKRLLKEQHLWDVD 81 (204)
T ss_pred CCcccC--CCCcEEEEEeccC---CC-C----------CcEEEEEEEEe-CCCHHHHHHHHHhhHHHHHHH
Confidence 777763 3578899999863 12 2 25566777788 677777775555559999973
No 106
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=80.67 E-value=2 Score=52.19 Aligned_cols=48 Identities=17% Similarity=0.329 Sum_probs=44.3
Q ss_pred HHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003075 29 VEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 29 l~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq 80 (850)
...|...|..|..|+...-..++... |+..+.||.||+++++....-+
T Consensus 568 ~sllkayyaln~~ps~eelskia~qv----glp~~vvk~wfE~~~a~e~sv~ 615 (1007)
T KOG3623|consen 568 TSLLKAYYALNGLPSEEELSKIAQQV----GLPFAVVKAWFEDEEAEEMSVE 615 (1007)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHh----cccHHHHHHHHHhhhhhhhhhc
Confidence 78899999999999999999999999 9999999999999998877633
No 107
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=80.29 E-value=5 Score=42.98 Aligned_cols=57 Identities=32% Similarity=0.272 Sum_probs=29.4
Q ss_pred hhhhhHHHHHHHH-----HHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003075 69 FQNRRCREKQRKE-----ASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (850)
Q Consensus 69 FQNRRak~Krkq~-----~~~l~~~n~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~ 125 (850)
-||-|-|.|.|-+ -..+..+|.+|..+|+.|++.++.|-.+.++|+.+...++++|.
T Consensus 81 AQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~ 142 (292)
T KOG4005|consen 81 AQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELA 142 (292)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4555655554222 22344556666666666666665554444555555444444443
No 108
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=79.65 E-value=5.7 Score=32.20 Aligned_cols=39 Identities=26% Similarity=0.229 Sum_probs=28.3
Q ss_pred HhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003075 87 TVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (850)
Q Consensus 87 ~~n~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~ 125 (850)
...+.|+++++.++.+++++.++.+.|+.|...|+..++
T Consensus 5 ~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 5 RDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345567777788888887777777777777777776654
No 109
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=79.60 E-value=81 Score=33.00 Aligned_cols=57 Identities=21% Similarity=0.348 Sum_probs=40.3
Q ss_pred CCCCccccccCCCcceEEEEecCCCCCCCCCCccCCCCCCceeEEEeeecccccCChHHHHHHHhh--hhcccccc
Q 003075 416 LDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HRSEWADY 489 (850)
Q Consensus 416 ~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~lf~FLRd--~R~eWd~~ 489 (850)
-..+|..... .++|+|-.|... + . ++.--++...+.++|++.+|++|.| .|.+||..
T Consensus 19 ~~~~W~l~~~--~~~i~Vy~r~~~----~-s----------~~~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~ 77 (207)
T cd08911 19 EPDGWEPFIE--KKDMLVWRREHP----G-T----------GLYEYKVYGSFDDVTARDFLNVQLDLEYRKKWDAT 77 (207)
T ss_pred cCCCcEEEEE--cCceEEEEeccC----C-C----------CcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhh
Confidence 4456987743 467998887764 1 1 2233455454558999999999998 89999973
No 110
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=78.03 E-value=27 Score=37.84 Aligned_cols=55 Identities=25% Similarity=0.414 Sum_probs=39.6
Q ss_pred CCCCCccccccCCCcceEEEEecCCCCCCCCCCccCCCCCCceeEEEeeecccccCChHHHHHHHhh--hhcccccc
Q 003075 415 FLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HRSEWADY 489 (850)
Q Consensus 415 s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~lf~FLRd--~R~eWd~~ 489 (850)
...++|..-.. .++|+|.++... . +++-++-+-+ ++|++.||++|.| .|.+||..
T Consensus 56 ~~~~~W~l~~~--~~gI~Vyt~~~s------~-----------~~~fK~e~~v-d~s~e~v~~lL~D~~~r~~Wd~~ 112 (240)
T cd08913 56 VAKDNWVLSSE--KNQVRLYTLEED------K-----------FLSFKVEMVV-HVDAAQAFLLLSDLRRRPEWDKH 112 (240)
T ss_pred cccCCCEEEEc--cCCEEEEEEeCC------C-----------ccEEEEEEEE-cCCHHHHHHHHhChhhhhhhHhh
Confidence 45678986532 488999985431 1 1233555677 8999999999998 89999973
No 111
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=75.39 E-value=4.1 Score=43.92 Aligned_cols=53 Identities=19% Similarity=0.344 Sum_probs=38.9
Q ss_pred CCCCccccccCCCcceEEEEecCCCCCCCCCCccCCCCCCceeEEEeeecccccCChHHHHHHHhh--hhccccc
Q 003075 416 LDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HRSEWAD 488 (850)
Q Consensus 416 ~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~lf~FLRd--~R~eWd~ 488 (850)
..++|... ...++|+|.++... ++++-++=+-+ ++|++.||++|.| .|.+||.
T Consensus 53 ~~~~W~l~--~~k~gIkVytr~~s-----------------~~l~fk~e~~v-d~s~~~v~dlL~D~~~R~~WD~ 107 (235)
T cd08873 53 AKSDWTVA--SSTTSVTLYTLEQD-----------------GVLSFCVELKV-QTCASDAFDLLSDPFKRPEWDP 107 (235)
T ss_pred ccCCCEEE--EcCCCEEEEEecCC-----------------CceEEEEEEEe-cCCHHHHHHHHhCcchhhhhhh
Confidence 46789765 34579999998731 12333333446 8999999999998 8999996
No 112
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=74.57 E-value=4.8 Score=33.37 Aligned_cols=47 Identities=15% Similarity=0.221 Sum_probs=36.5
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhh
Q 003075 18 STKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRR 73 (850)
Q Consensus 18 ~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRR 73 (850)
+++|..+|-+|...+-..++..+ ....+|+++ |+...+|.-|..||.
T Consensus 1 krkR~~LTl~eK~~iI~~~e~g~-----s~~~ia~~f----gv~~sTv~~I~K~k~ 47 (53)
T PF04218_consen 1 KRKRKSLTLEEKLEIIKRLEEGE-----SKRDIAREF----GVSRSTVSTILKNKD 47 (53)
T ss_dssp SSSSSS--HHHHHHHHHHHHCTT------HHHHHHHH----T--CCHHHHHHHCHH
T ss_pred CCCCccCCHHHHHHHHHHHHcCC-----CHHHHHHHh----CCCHHHHHHHHHhHH
Confidence 47888999999888888888876 578899999 999999999998854
No 113
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=71.88 E-value=1.2e+02 Score=30.81 Aligned_cols=148 Identities=19% Similarity=0.250 Sum_probs=82.8
Q ss_pred HHHHHHHHHhhhccCCCCCCccccccCCCcceEEEEecCCCCCCCCCCccCCCCCCceeEEEeeecccccCChHHHHHHH
Q 003075 400 FSQRLSRGFNDAINGFLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFL 479 (850)
Q Consensus 400 LaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~lf~FL 479 (850)
|+++....|..- .....++|.........++. +++... + . ...+...++..-+ +.++..+|..|
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~W~~~~~~~~~~~~--~~~~~~---~-~--------~~~~~~~k~~~~v-~~~~~~~~~~~ 65 (206)
T PF01852_consen 2 LAEELMQEELAL-AQEDEDGWKLYKDKKNGDVY--YKKVSP---S-D--------SCPIKMFKAEGVV-PASPEQVVEDL 65 (206)
T ss_dssp HHHHHHHHHHHH-HHHTCTTCEEEEEETTTCEE--EEEEEC---S-S--------STSCEEEEEEEEE-SSCHHHHHHHH
T ss_pred HHHHHHHHHHHH-hhcCCCCCeEeEccCCCeEE--EEEeCc---c-c--------cccceEEEEEEEE-cCChHHHHHHH
Confidence 455555556533 35677899988633333433 444321 1 1 1135567777778 78888777777
Q ss_pred hhhhcccccccccchhhhhhccCCCCCCCCCCCCCCCcceEeeccccCCCCceEEEEEecCCCCCccccccccceEeEee
Q 003075 480 REHRSEWADYGVDAYSAACLKASPYAVPCARPGGFPSSHVILPLAHTVEHEEFLEVVRLEGHAFSPEDVALARDMYLLQL 559 (850)
Q Consensus 480 Rd~R~eWd~~~~d~~s~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~s~~~liLQe 559 (850)
.+.+.+||.. +. + .+.+-.+ ++++.|.....+..- -..+.+||..+++-
T Consensus 66 ~~~~~~Wd~~----~~-----~---------------~~~le~~----~~~~~i~~~~~~~~~---~~p~~~RDfv~~~~ 114 (206)
T PF01852_consen 66 LDDREQWDKM----CV-----E---------------AEVLEQI----DEDTDIVYFVMKSPW---PGPVSPRDFVFLRS 114 (206)
T ss_dssp HCGGGHHSTT----EE-----E---------------EEEEEEE----ETTEEEEEEEEE-CT---TTTSSEEEEEEEEE
T ss_pred HhhHhhcccc----hh-----h---------------heeeeec----CCCCeEEEEEecccC---CCCCCCcEEEEEEE
Confidence 7644499974 11 0 2333333 223455554444321 11356788888887
Q ss_pred ccCcCCCCCCceeEEEeecccCCC-----CCC--CccccCceEEec
Q 003075 560 CSGIDENTVGACAQLVFAPIDESF-----ADD--APLLASGFRVIP 598 (850)
Q Consensus 560 ~~~~De~~~Gs~s~vVyAPvD~~d-----s~~--v~LLPSGF~I~P 598 (850)
.. .+ ..|+ -.+++..||-+. +.. +-+++|||.|-|
T Consensus 115 ~~-~~--~~~~-~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~ 156 (206)
T PF01852_consen 115 WR-KD--EDGT-YVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRP 156 (206)
T ss_dssp EE-EC--TTSE-EEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEE
T ss_pred EE-Ee--ccce-EEEEEeeeccccccccccCcceeeeeeEeEEEEE
Confidence 53 33 3343 355556777652 233 348999999999
No 114
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=71.59 E-value=34 Score=39.66 Aligned_cols=106 Identities=8% Similarity=0.063 Sum_probs=68.0
Q ss_pred HHHHh-cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeE
Q 003075 734 LKQLW-HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMC 812 (850)
Q Consensus 734 ~~~L~-~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 812 (850)
.+.++ +.+.+++..+.+ -.++|.|+++.++|+++.+++.+.+...-.++.. . ....+.++.+.|-.....-++
T Consensus 264 ~~~i~~~~~~~i~~~d~~----g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~ 337 (607)
T PRK11360 264 NELILESIADGVIAIDRQ----GKITTMNPAAEVITGLQRHELVGKPYSELFPPNT-P-FASPLLDTLEHGTEHVDLEIS 337 (607)
T ss_pred HHHHHHhccCeEEEEcCC----CCEEEECHHHHHHhCCChHHhcCCcHHHHcCCch-h-HHHHHHHHHhcCCCccceEEE
Confidence 44444 478888888765 5789999999999999999999988776665432 2 233444555554433333344
Q ss_pred EcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003075 813 VSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 813 iss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
+...+....+ ...+=.+.|++|...|...+|.+
T Consensus 338 ~~~~~~~~~~-~~~~~~i~~~~g~~~~~i~~~~D 370 (607)
T PRK11360 338 FPGRDRTIEL-SVSTSLLHNTHGEMIGALVIFSD 370 (607)
T ss_pred EEcCCCcEEE-EEEEeeEEcCCCCEEEEEEEEee
Confidence 4433333323 23333567889999888877754
No 115
>PRK09776 putative diguanylate cyclase; Provisional
Probab=70.61 E-value=25 Score=44.92 Aligned_cols=102 Identities=14% Similarity=0.101 Sum_probs=66.5
Q ss_pred cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCCh---hcHHHHHHHHHHHHHhccc-c-CCCeeEE
Q 003075 739 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDE---AGRKILCTEFAKIMQQGFA-Y-LPGGMCV 813 (850)
Q Consensus 739 ~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~---~~r~er~~lL~~v~~qG~~-~-~y~GvRi 813 (850)
..+++|+..+.+ =.++|.|+++.++++++-+|+.+.|...-... ........ +.+....+-. . ...-...
T Consensus 544 ~~~~~i~~~D~~----g~i~~~N~a~~~l~G~~~~e~iG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 618 (1092)
T PRK09776 544 SIGEAVVCTDMA----MKVTFMNPVAEKMTGWTQEEALGVPLLTVLHITFGDNGPLMEN-IYSCLTSRSAAYLEQDVVLH 618 (1092)
T ss_pred ccccEEEEECCC----CeEEEEcHHHHHHhCCCHHHHcCCCHHHHcccccCCcchhhHH-HHHHHhcCCCccccceEEEE
Confidence 367788877655 57999999999999999999999876543321 11122222 3333222211 1 1122346
Q ss_pred cCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003075 814 SSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 814 ss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
.+.|++++++- .+-.+.|++|...|.-.++.+
T Consensus 619 ~~~G~~~~~~~-~~~pi~~~~g~~~g~v~~~~D 650 (1092)
T PRK09776 619 CRSGGSYDVHY-SITPLSTLDGENIGSVLVIQD 650 (1092)
T ss_pred eCCCcEEEEEE-EeeeeecCCCCEEEEEEEEEe
Confidence 78999998864 566788999999988777654
No 116
>PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D.
Probab=70.29 E-value=21 Score=32.52 Aligned_cols=97 Identities=11% Similarity=-0.016 Sum_probs=63.3
Q ss_pred CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEEcCCCCe
Q 003075 740 HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGRA 819 (850)
Q Consensus 740 ~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grr 819 (850)
.|.+++..+.. =.+.|-|++|.++|... ...++-|-.--..+...+.....+.++...+- ...-+.+...||.
T Consensus 8 ~~~~i~~vD~~----~~I~~~n~~a~~~f~~~-~~~iGr~l~~~~~~~~~~~l~~~i~~~~~~~~--~~~~~~~~~~~~~ 80 (106)
T PF13596_consen 8 MPIGIIFVDRN----LRIRYFNPAAARLFNLS-PSDIGRPLFDIHPPLSYPNLKKIIEQVRSGKE--EEFEIVIPNGGRW 80 (106)
T ss_dssp SSSEEEEEETT----SBEEEE-SCGC-SS----GGGTTSBCCCSS-HHHHHHHHHHHHHHHTTSB--SEEEEEEEETTEE
T ss_pred CCCCEEEEcCC----CeEEEeChhHhhhcCCC-hHHCCCCHHHcCCccchHHHHHHHHHHHcCCC--ceEEEEecCCCEE
Confidence 67787777765 68999999999999966 45567777666666666777777777765443 1123344566777
Q ss_pred EEEcceEEeEeecCCCCeeEEEEeecC
Q 003075 820 VSYEQAVAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 820 f~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
|.+ .+=-+.|++|++.|...+|.+
T Consensus 81 ~~~---~~~P~~~~~g~~~G~v~~~~D 104 (106)
T PF13596_consen 81 YLV---RYRPYRDEDGEYAGAVITFQD 104 (106)
T ss_dssp EEE---EEEEEE-TTS-EEEEEEEEEE
T ss_pred EEE---EEEEEECCCCCEEEEEEEEEe
Confidence 766 556677999999999999965
No 117
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=67.86 E-value=23 Score=43.50 Aligned_cols=102 Identities=12% Similarity=-0.020 Sum_probs=66.5
Q ss_pred HHHHhcCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccC--C--C
Q 003075 734 LKQLWHHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYL--P--G 809 (850)
Q Consensus 734 ~~~L~~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~--y--~ 809 (850)
..++-+.|.+++..+.+ -.++|.|+++.++|+++-+|+.+-|...-..+..+......+.++...|-... + .
T Consensus 15 ~~~le~~~~~i~~~d~~----g~i~~~N~~~~~l~G~s~eeliG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 90 (799)
T PRK11359 15 FPALEQNMMGAVLINEN----DEVLFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSRE 90 (799)
T ss_pred HHHHHhhcCcEEEEcCC----CeEEEEcHHHHHHhCCCHHHHcCCCHHHhcCccccccchHHHhhhhccCCcccccccee
Confidence 34555688888877654 68999999999999999999999877665555554444445555544443211 1 1
Q ss_pred eeEEcCCCCeEEEcceEEeEeecCCCCeeEEE
Q 003075 810 GMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLA 841 (850)
Q Consensus 810 GvRiss~Grrf~i~~a~vW~l~d~~g~~~gqA 841 (850)
-....+.|++++++-.. ..++.+|...+.+
T Consensus 91 ~~~~~~dG~~~~v~~~~--~~~~~~g~~~~~~ 120 (799)
T PRK11359 91 LQLEKKDGSKIWTRFAL--SKVSAEGKVYYLA 120 (799)
T ss_pred eEEecCCcCEEEEEEEe--eeeccCCceEEEE
Confidence 12346789888876433 4556777765543
No 118
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=67.25 E-value=9.9 Score=39.87 Aligned_cols=65 Identities=18% Similarity=0.372 Sum_probs=45.5
Q ss_pred Hhhhcc--CCCCCCccccccCCCcceEEEEecCCCCCCCCCCccCCCCCCceeEEEeeecccccCChHHHHHHHhh--hh
Q 003075 408 FNDAIN--GFLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HR 483 (850)
Q Consensus 408 F~~~v~--~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~lf~FLRd--~R 483 (850)
||.=|+ .-.+.+|..... .++|+|-.|... + . ++..-++...++.++|+.++++|.| .|
T Consensus 13 ~~~~~~~~~~~~~~W~l~~~--~~~i~Vy~r~~~----~-s----------~~~~~k~~~~~~~~s~~~~~~~l~D~~~r 75 (207)
T cd08910 13 ACAELQQPALDGAAWELLVE--SSGISIYRLLDE----Q-S----------GLYEYKVFGVLEDCSPSLLADVYMDLEYR 75 (207)
T ss_pred HHHHhcCCCCCCCCeEEEEe--cCCeEEEEeccC----C-C----------CcEEEEEEEEEcCCCHHHHHHHHhCHHHH
Confidence 443444 334467987743 468999887653 2 1 3445677778855999999999998 89
Q ss_pred cccccc
Q 003075 484 SEWADY 489 (850)
Q Consensus 484 ~eWd~~ 489 (850)
.+||..
T Consensus 76 ~~Wd~~ 81 (207)
T cd08910 76 KQWDQY 81 (207)
T ss_pred HHHHHH
Confidence 999973
No 119
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=67.25 E-value=54 Score=31.07 Aligned_cols=132 Identities=17% Similarity=0.174 Sum_probs=70.7
Q ss_pred eeeeEEeeChhhHHHHhcCccchhhcCCcceeeeeccCCCccHHHHHHHhhcccccccccce-eeEEeeccccCCCcEEE
Q 003075 216 RACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARD-FWLLRYSTSLEDGSLVV 294 (850)
Q Consensus 216 R~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re-~~fLRyckq~~~G~waV 294 (850)
|++-.|...+..+-+++.|.+.|.+-+|.++-..++..+.++.. + +.. .|. +.+++|+.. ++
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~~~~~--~--~~~-------~~~~~~~~~~~~~------v~ 64 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERNGNRVV--L--EQT-------GKQGILFFKFEAR------VV 64 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCCCEEE--E--EEe-------eeEEEEeeeeeEE------EE
Confidence 45667788899999999999999999998866666544333310 0 000 111 222233221 12
Q ss_pred EEeecCCCCCCCCCCCCCccccccc----cc--cce-eeeecCC-CceEEEEEEeeeccCCCccccchhhhhhhHHHHHH
Q 003075 295 CERSLTSSTGGPTGPPPSSFVRAEM----LA--SGF-LIRPCEG-GGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQK 366 (850)
Q Consensus 295 vDvSld~~~~~~~~~~~~~f~r~~r----lP--SGc-lIq~~~n-G~skVtwVeH~e~d~~~v~~l~Rpl~~Sg~afgar 366 (850)
.++..... + ....+.+. ++ .|+ -+++.++ |+|.|+|--|++... .+| -++++.-+-=+.+
T Consensus 65 ~~~~~~~~---~-----~~~i~~~~~~g~~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~-~~p---~~l~~~~~~~~~~ 132 (144)
T cd08866 65 LELREREE---F-----PRELDFEMVEGDFKRFEGSWRLEPLADGGGTLLTYEVEVKPDF-FAP---VFLVEFVLRQDLP 132 (144)
T ss_pred EEEEEecC---C-----CceEEEEEcCCchhceEEEEEEEECCCCCeEEEEEEEEEEeCC-CCC---HHHHHHHHHHHHH
Confidence 22111000 0 00011110 01 232 3678887 789999988877653 333 3566444444667
Q ss_pred HHHHHHH-HHH
Q 003075 367 MTMAAMR-HIR 376 (850)
Q Consensus 367 ~~~~aLr-~~e 376 (850)
..+.+|| +||
T Consensus 133 ~~l~~lr~~ae 143 (144)
T cd08866 133 TNLLAIRAEAE 143 (144)
T ss_pred HHHHHHHHHHh
Confidence 7777775 555
No 120
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=66.74 E-value=11 Score=41.37 Aligned_cols=30 Identities=30% Similarity=0.305 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003075 96 NKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (850)
Q Consensus 96 n~~l~ee~~~l~~e~~~L~~En~~Lk~el~ 125 (850)
-..|..||+.+..++.+|+.|+..|++-+.
T Consensus 224 ~~~leken~~lr~~v~~l~~el~~~~~~~~ 253 (269)
T KOG3119|consen 224 VAELEKENEALRTQVEQLKKELATLRRLFL 253 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555443
No 121
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=66.65 E-value=8.9 Score=42.35 Aligned_cols=36 Identities=28% Similarity=0.196 Sum_probs=22.7
Q ss_pred HHHhhHHHHHHHHHHHH----HHHHHHHHhHHHHHhhccC
Q 003075 92 LSAMNKLLMEENDRLQK----QVSHLVYENGYMRQQLHSA 127 (850)
Q Consensus 92 l~aen~~l~ee~~~l~~----e~~~L~~En~~Lk~el~~~ 127 (850)
+.+||+.|++++.++.. ..+.|+.||++||+.|+-.
T Consensus 71 l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 71 LEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 45555555555544422 2334899999999988743
No 122
>smart00338 BRLZ basic region leucin zipper.
Probab=66.19 E-value=32 Score=29.39 Aligned_cols=45 Identities=31% Similarity=0.441 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 003075 73 RCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYEN 117 (850)
Q Consensus 73 Rak~Krkq~~~~l~~~n~~l~aen~~l~ee~~~l~~e~~~L~~En 117 (850)
++|.|++.....++.....|..+|..|..+...+..++..|+.++
T Consensus 19 ~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 19 RSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566666666667777777788888888888888888887777665
No 123
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=65.76 E-value=56 Score=30.62 Aligned_cols=120 Identities=13% Similarity=0.087 Sum_probs=64.0
Q ss_pred eeeEEeeChhhHHHHhcCccchhhcCCcceeeeeccCCCccHHHHHHHhhcccccccccceeeEEeeccccCCCcEEEEE
Q 003075 217 ACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVCE 296 (850)
Q Consensus 217 ~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~~~G~waVvD 296 (850)
.+-.+...+.++.++|.|.+.|.+-+|.++-+..++.|. ..+ +....+ .|+ ..|--...+|...-++..+++.-
T Consensus 5 ~~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~~~---~~~-~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd05018 5 GEFRIPAPPEEVWAALNDPEVLARCIPGCESLEKIGPNE---YEA-TVKLKV-GPV-KGTFKGKVELSDLDPPESYTITG 78 (144)
T ss_pred eEEEecCCHHHHHHHhcCHHHHHhhccchhhccccCCCe---EEE-EEEEEE-ccE-EEEEEEEEEEEecCCCcEEEEEE
Confidence 344577788999999999999999998876555544221 110 111111 222 22332334555433444444432
Q ss_pred eecCCCCCCCCCCCCCccccccccccceeeeecCCCceEEEEEEeeeccCCCccccchhhh
Q 003075 297 RSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLY 357 (850)
Q Consensus 297 vSld~~~~~~~~~~~~~f~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~Rpl~ 357 (850)
..... ..+. ..=--+-+.+. +|+|+|+|.-+++..- .+..+..+++
T Consensus 79 ~~~~~----------~~~~---~~~~~~~l~~~-~~gT~v~~~~~~~~~g-~l~~l~~~~~ 124 (144)
T cd05018 79 EGKGG----------AGFV---KGTARVTLEPD-GGGTRLTYTADAQVGG-KLAQLGSRLI 124 (144)
T ss_pred EEcCC----------CceE---EEEEEEEEEec-CCcEEEEEEEEEEEcc-ChhhhCHHHH
Confidence 21110 0011 11123457787 6779999999999653 3333344443
No 124
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=65.31 E-value=14 Score=41.00 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHH
Q 003075 75 REKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHL 113 (850)
Q Consensus 75 k~Krkq~~~~l~~~n~~l~aen~~l~ee~~~l~~e~~~L 113 (850)
|.|||.+...+..+-..|.+.|+.||+...++++|++-|
T Consensus 243 RqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~yl 281 (294)
T KOG4571|consen 243 RQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYL 281 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443344444444444444444444444444433
No 125
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=65.24 E-value=9.6 Score=41.19 Aligned_cols=55 Identities=22% Similarity=0.373 Sum_probs=43.2
Q ss_pred CCCCCccccccCCCcceEEEEecCCCCCCCCCCccCCCCCCceeEEEeeecccccCChHHHHHHHhh--hhcccccc
Q 003075 415 FLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HRSEWADY 489 (850)
Q Consensus 415 s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~lf~FLRd--~R~eWd~~ 489 (850)
...++|..-. ..++|+|-++. + . .+++-++-+-+ ++|++.+|++|.| .|.+||..
T Consensus 53 a~~~~W~l~~--dkdgIkVytr~--~-----s----------~~l~fk~e~~v-dvs~~~l~~LL~D~~~r~~Wd~~ 109 (236)
T cd08914 53 AAKSGWEVTS--TVEKIKIYTLE--E-----H----------DVLSVWVEKHV-KRPAHLAYRLLSDFTKRPLWDPH 109 (236)
T ss_pred cccCCCEEEE--ccCCEEEEEec--C-----C----------CcEEEEEEEEE-cCCHHHHHHHHhChhhhchhHHh
Confidence 4578998653 45789999884 1 1 24777888888 8999999999998 89999973
No 126
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=64.56 E-value=71 Score=29.50 Aligned_cols=35 Identities=9% Similarity=0.017 Sum_probs=27.5
Q ss_pred eeEEeeChhhHHHHhcCccchhhcCCcceeeeecc
Q 003075 218 CGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIP 252 (850)
Q Consensus 218 ~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~ 252 (850)
+..|...+..+-+.|.|.+.|.+-+|.+..+....
T Consensus 6 ~~~i~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~ 40 (140)
T cd07821 6 SVTIDAPADKVWALLSDFGGLHKWHPAVASCELEG 40 (140)
T ss_pred EEEECCCHHHHHHHHhCcCchhhhccCcceEEeec
Confidence 44577788899999999999998888776555544
No 127
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=64.28 E-value=12 Score=40.83 Aligned_cols=38 Identities=26% Similarity=0.255 Sum_probs=25.5
Q ss_pred hHHHHhhHHHHHHHHHHHHHHH---HHHHHhHHHHHhhccC
Q 003075 90 RKLSAMNKLLMEENDRLQKQVS---HLVYENGYMRQQLHSA 127 (850)
Q Consensus 90 ~~l~aen~~l~ee~~~l~~e~~---~L~~En~~Lk~el~~~ 127 (850)
..+.++|+.|++|+.+++.+.. +++.||.+||+.|+-.
T Consensus 72 ~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~ 112 (276)
T PRK13922 72 FDLREENEELKKELLELESRLQELEQLEAENARLRELLNLK 112 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3455666666666665555444 6789999999987743
No 128
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=64.17 E-value=51 Score=32.57 Aligned_cols=108 Identities=11% Similarity=0.180 Sum_probs=61.5
Q ss_pred eeeeEEeeChhhHHHHhcCccchhhcCCcceeeeeccCCCccHHHHHHHhh--cccccccccceeeEEeeccccCCCcEE
Q 003075 216 RACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQT--YAPTTLAAARDFWLLRYSTSLEDGSLV 293 (850)
Q Consensus 216 R~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~--~v~SPLvp~Re~~fLRyckq~~~G~wa 293 (850)
..+-+|.-.+..+-+++-|..+|-+.||-+.-+.+++.|..|.. +.+ ....+ ..+.-|.=|.+ +....|-
T Consensus 4 ~~si~i~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~----~r~~i~~~~~--g~~~~w~s~~~--~~~~~~~ 75 (146)
T cd08860 4 DNSIVIDAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVR----FRLTMHPDAN--GTVWSWVSERT--LDPVNRT 75 (146)
T ss_pred eeEEEEcCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEE----EEEEEEeccC--CEEEEEEEEEE--ecCCCcE
Confidence 34567777899999999999999999998765555555433311 223 22222 12222322333 3333443
Q ss_pred EEEeecCCCCCCCCCCCCCccccccccccceeeeecCCCceEEEEEEeeecc
Q 003075 294 VCERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLD 345 (850)
Q Consensus 294 VvDvSld~~~~~~~~~~~~~f~r~~rlPSGclIq~~~nG~skVtwVeH~e~d 345 (850)
|.=..... +| | ..+=-...+++.++| |+|++.-+++..
T Consensus 76 i~~~~~~~---~p-------~---~~m~~~W~f~~~~~g-T~V~~~~~~~~~ 113 (146)
T cd08860 76 VRARRVET---GP-------F---AYMNIRWEYTEVPEG-TRMRWVQDFEMK 113 (146)
T ss_pred EEEEEecC---CC-------c---ceeeeeEEEEECCCC-EEEEEEEEEEEC
Confidence 33112211 11 1 112233557888877 999999998865
No 129
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=63.57 E-value=21 Score=29.60 Aligned_cols=15 Identities=40% Similarity=0.488 Sum_probs=5.7
Q ss_pred HHHHHHHHhHHHHHh
Q 003075 109 QVSHLVYENGYMRQQ 123 (850)
Q Consensus 109 e~~~L~~En~~Lk~e 123 (850)
+++.|..+|..|+++
T Consensus 33 ~~~~L~~en~~L~~~ 47 (54)
T PF07716_consen 33 EVQELEEENEQLRQE 47 (54)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 130
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=62.87 E-value=20 Score=33.94 Aligned_cols=47 Identities=28% Similarity=0.293 Sum_probs=28.3
Q ss_pred hhhhhhhhhhh--hHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHH
Q 003075 62 PKQIKVWFQNR--RCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQK 108 (850)
Q Consensus 62 ~rQVkvWFQNR--Rak~Krkq~~~~l~~~n~~l~aen~~l~ee~~~l~~ 108 (850)
.-+...||++. +.-.+.+++...++.++.+++.+|..|+++.++++.
T Consensus 14 ~l~y~l~~g~~G~~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 14 WLQYSLWFGKNGILDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34667899765 333344455555666666666666666666665544
No 131
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=62.84 E-value=17 Score=32.35 Aligned_cols=33 Identities=30% Similarity=0.370 Sum_probs=16.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003075 92 LSAMNKLLMEENDRLQKQVSHLVYENGYMRQQL 124 (850)
Q Consensus 92 l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el 124 (850)
|+.+++.+++++..+..+...|+.||.+|+++.
T Consensus 23 Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~ 55 (72)
T PF06005_consen 23 LQMENEELKEKNNELKEENEELKEENEQLKQER 55 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 444444455554444444555555555555543
No 132
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=61.84 E-value=52 Score=31.23 Aligned_cols=134 Identities=11% Similarity=0.109 Sum_probs=73.3
Q ss_pred eeeEEeeChhhHHHHhcCccchhhcCCcceeeeeccCCCccHHHHHHHhhcccccccccceeeEEeeccccCCCcEEEEE
Q 003075 217 ACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVCE 296 (850)
Q Consensus 217 ~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~~~G~waVvD 296 (850)
.+-.|...+..+.+++-|.+.|.+.+|.++-..++..+.++ +.+++.+..|. -.|++. .|++- ..+..+ -=
T Consensus 3 ~s~~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~~~----~~~~~~~~~~~-~~~~~~-~~~~~--~~~~~i-~~ 73 (138)
T cd07813 3 KSRLVPYSAEQMFDLVADVERYPEFLPWCTASRVLERDEDE----LEAELTVGFGG-IRESFT-SRVTL--VPPESI-EA 73 (138)
T ss_pred EEEEcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCCCE----EEEEEEEeecc-ccEEEE-EEEEe--cCCCEE-EE
Confidence 45566777888999999999999998876544444433322 11122232232 133433 33332 113222 11
Q ss_pred eecCCCCCCCCCCCCCccccccccccceeeeecCCCceEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHH-HHH
Q 003075 297 RSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAM-RHI 375 (850)
Q Consensus 297 vSld~~~~~~~~~~~~~f~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~Rpl~~Sg~afgar~~~~aL-r~~ 375 (850)
.++++ + | +.+=--..+++.++|.|+|++.-|++..- .++.++++.-+.=..+..+.++ +.|
T Consensus 74 ~~~~g----~-------~---~~~~g~w~~~p~~~~~T~v~~~~~~~~~~----~l~~~l~~~~~~~~~~~~l~~f~~~~ 135 (138)
T cd07813 74 ELVDG----P-------F---KHLEGEWRFKPLGENACKVEFDLEFEFKS----RLLEALAGLVFDEVAKKMVDAFEKRA 135 (138)
T ss_pred EecCC----C-------h---hhceeEEEEEECCCCCEEEEEEEEEEECC----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 0 1 11223456789999999999999999862 2344444333333456666666 356
Q ss_pred Hh
Q 003075 376 RQ 377 (850)
Q Consensus 376 e~ 377 (850)
++
T Consensus 136 ~~ 137 (138)
T cd07813 136 KQ 137 (138)
T ss_pred hh
Confidence 54
No 133
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=60.66 E-value=31 Score=34.05 Aligned_cols=29 Identities=38% Similarity=0.476 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003075 97 KLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (850)
Q Consensus 97 ~~l~ee~~~l~~e~~~L~~En~~Lk~el~ 125 (850)
+.|..++..+..|+++|+.||.+++.|++
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~d 105 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELD 105 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566666667777777666665
No 134
>smart00091 PAS PAS domain. PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels ([1]; Ponting & Aravind, in press).
Probab=57.94 E-value=42 Score=23.50 Aligned_cols=57 Identities=18% Similarity=0.215 Sum_probs=37.1
Q ss_pred HHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHH
Q 003075 736 QLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEF 796 (850)
Q Consensus 736 ~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL 796 (850)
.++. .+..++..+.+ -.+.|.|..+.++++++..++.+.+......+..++.-...+
T Consensus 5 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (67)
T smart00091 5 AILESLPDGIFVLDLD----GRILYANPAAEELLGYSPEELIGKSLLELIHPEDREEVQEAL 62 (67)
T ss_pred HHHhhCCceEEEEcCC----CeEEEECHHHHHHhCCCHHHHcCCcHHHhcCcccHHHHHHHH
Confidence 3443 45555555543 467899999999999999998877665555555543333333
No 135
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=57.78 E-value=16 Score=38.37 Aligned_cols=55 Identities=18% Similarity=0.372 Sum_probs=40.0
Q ss_pred CCCCccccccCCCcceEEEEecCCCCCCCCCCccCCCCCCceeEEEeeecccccCChHHHHHHHhh----hhccccc
Q 003075 416 LDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE----HRSEWAD 488 (850)
Q Consensus 416 ~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~lf~FLRd----~R~eWd~ 488 (850)
..++|.... + .++|+|.++++.+ .. |-+ -++-.-+ |++|+.||++|.| .|.+||.
T Consensus 20 ~~~~W~~~~-~-~~~i~v~~~~~~~--~~-----------~~~--~k~e~~i-~~s~~~~~~~l~d~~~~~r~~W~~ 78 (208)
T cd08903 20 DESGWKTCR-R-TNEVAVSWRPSAE--FA-----------GNL--YKGEGIV-YATLEQVWDCLKPAAGGLRVKWDQ 78 (208)
T ss_pred cccCCEEEE-c-CCCEEEEeeecCC--CC-----------CcE--EEEEEEe-cCCHHHHHHHHHhccchhhhhhhh
Confidence 567898775 3 3699999998752 11 222 4445566 8999999999984 6899996
No 136
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=57.23 E-value=17 Score=29.50 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=16.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 003075 93 SAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHS 126 (850)
Q Consensus 93 ~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~~ 126 (850)
..+++.|+...+.+..+...|..||..|+.|+..
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~ 37 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQE 37 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443
No 137
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=57.13 E-value=26 Score=41.19 Aligned_cols=39 Identities=28% Similarity=0.300 Sum_probs=31.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCC
Q 003075 91 KLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSAPA 129 (850)
Q Consensus 91 ~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~~~~~ 129 (850)
.|........+||.+|++++++|..+|..|-++|.+.-+
T Consensus 276 ~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt 314 (472)
T KOG0709|consen 276 GLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQT 314 (472)
T ss_pred HHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 355555667788889999999999999999999987643
No 138
>PRK13560 hypothetical protein; Provisional
Probab=56.59 E-value=76 Score=38.72 Aligned_cols=107 Identities=14% Similarity=0.066 Sum_probs=61.3
Q ss_pred HHHHhc-CCCeEeecCCCCCCCCeeEcc-cHHHHHhhccCHHHHhcccccccCChhcHHHH------------------H
Q 003075 734 LKQLWH-HSDAIMCCSLKTNASPVFTFA-NQAGLDMLETTLVALQDIMLDKILDEAGRKIL------------------C 793 (850)
Q Consensus 734 ~~~L~~-~~~avl~h~~~~~~dP~F~Ya-N~aAL~l~e~~w~el~~lpsr~sae~~~r~er------------------~ 793 (850)
++.++. .|.+|+..+.. -.++|. |.++.++|+++.+++.+.+..... +..+++. .
T Consensus 334 l~~l~~~~~~~i~~~d~~----g~i~~~nn~~~~~~~G~~~~e~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (807)
T PRK13560 334 LRAIIEAAPIAAIGLDAD----GNICFVNNNAAERMLGWSAAEVMGKPLPGMD-PELNEEFWCGDFQEWYPDGRPMAFDA 408 (807)
T ss_pred HHHHHHhCcccEEEEcCC----CCEEEecCHHHHHHhCCCHHHHcCCCccccC-hhhhhhhhhchhhhcCCcCCcchhhh
Confidence 344443 67777766554 456665 678888999999999997753322 2111111 0
Q ss_pred HHHHHHHHhccccCCCee-EEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003075 794 TEFAKIMQQGFAYLPGGM-CVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 794 ~lL~~v~~qG~~~~y~Gv-Riss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
..+.+..++|-.....-+ ...+.|..+++. ..+-.+.|++|...|.-.++.+
T Consensus 409 ~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~-~~~~p~~d~~g~~~~~~~~~~D 461 (807)
T PRK13560 409 CPMAKTIKGGKIFDGQEVLIEREDDGPADCS-AYAEPLHDADGNIIGAIALLVD 461 (807)
T ss_pred hhHHHHHhcCCcccCceEEEEcCCCCeEEEE-EEEeeeECCCCCEEEEEEEeeh
Confidence 112233444443322223 334567766663 4555678999999887666543
No 139
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=54.46 E-value=76 Score=27.02 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=25.9
Q ss_pred hhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003075 88 VNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQL 124 (850)
Q Consensus 88 ~n~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el 124 (850)
.-..|......|..++..|..++..|..++..|+.++
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445666677777777777777777777777777664
No 140
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=52.86 E-value=2.8e+02 Score=28.68 Aligned_cols=66 Identities=21% Similarity=0.406 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhhccCCCCCCccccccCCCcceEEEEecCCCCCCCCCCccCCCCCCceeEEEeeecccccCChHHHHHH
Q 003075 399 TFSQRLSRGFNDAINGFLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRF 478 (850)
Q Consensus 399 ~LaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~lf~F 478 (850)
++.|.|..-+.. .++|.... ..++|+|..++..+ . .+ -..++..-+ |.+|+.||++
T Consensus 9 ~~~~~~~~~~~~------~~~W~~~~--~~~~i~v~~~~~~~-----~--------~~--~~~k~~~~i-~~~~~~v~~~ 64 (206)
T cd08867 9 KLANEALQYIND------TDGWKVLK--TVKNITVSWKPSTE-----F--------TG--HLYRAEGIV-DALPEKVIDV 64 (206)
T ss_pred HHHHHHHHHhcC------cCCcEEEE--cCCCcEEEEecCCC-----C--------CC--EEEEEEEEE-cCCHHHHHHH
Confidence 444555554442 27899874 34789999885431 0 11 123556677 7999999999
Q ss_pred Hhh----hhccccc
Q 003075 479 LRE----HRSEWAD 488 (850)
Q Consensus 479 LRd----~R~eWd~ 488 (850)
|.| .|.+||.
T Consensus 65 l~d~~~~~r~~Wd~ 78 (206)
T cd08867 65 IIPPCGGLRLKWDK 78 (206)
T ss_pred HHhcCccccccccc
Confidence 997 7999995
No 141
>PRK10724 hypothetical protein; Provisional
Probab=52.76 E-value=1.2e+02 Score=30.65 Aligned_cols=134 Identities=10% Similarity=0.198 Sum_probs=75.4
Q ss_pred eeeeEEeeChhhHHHHhcCccchhhcCCcceeeeeccCCCccHHHHHHHhhcccccccccceeeEEeeccccCCCcEEEE
Q 003075 216 RACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVC 295 (850)
Q Consensus 216 R~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~~~G~waVv 295 (850)
+.+.+|.-.+..+.+.+.|.++|-+..|-..-..++....++ +.+++.+--.- ..+-+.-|+.-. .++ .+.+
T Consensus 18 ~~~~~v~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~~----~~a~l~v~~~g--~~~~f~srv~~~-~~~-~I~~ 89 (158)
T PRK10724 18 SRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPGQ----MTAAVDVSKAG--ISKTFTTRNQLT-SNQ-SILM 89 (158)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCCE----EEEEEEEeeCC--ccEEEEEEEEec-CCC-EEEE
Confidence 556888899999999999999999988755333333333233 23444332222 233333333332 233 3222
Q ss_pred EeecCCCCCCCCCCCCCccccccccccceeeeecCCCceEEEEEEeeeccCCCccccchhhhhhhHHH--HHHHHHHHHH
Q 003075 296 ERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKIL--AQKMTMAAMR 373 (850)
Q Consensus 296 DvSld~~~~~~~~~~~~~f~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~Rpl~~Sg~af--gar~~~~aLr 373 (850)
..+++ | | +.+=.-.-+++.++|.|+|+.--+.|+.. .++.+++ +..| .++..+.|.+
T Consensus 90 -~~~~G----p-------F---~~l~g~W~f~p~~~~~t~V~~~l~fef~s----~l~~~~~--~~~~~~~~~~mv~AF~ 148 (158)
T PRK10724 90 -QLVDG----P-------F---KKLIGGWKFTPLSQEACRIEFHLDFEFTN----KLIELAF--GRVFKELASNMVQAFT 148 (158)
T ss_pred -EecCC----C-------h---hhccceEEEEECCCCCEEEEEEEEEEEch----HHHHHHH--HHHHHHHHHHHHHHHH
Confidence 22222 1 1 22434445778888889999988888553 3444554 3333 5666666663
Q ss_pred -HHHhh
Q 003075 374 -HIRQI 378 (850)
Q Consensus 374 -~~e~l 378 (850)
.|+.+
T Consensus 149 ~Ra~~~ 154 (158)
T PRK10724 149 VRAKEV 154 (158)
T ss_pred HHHHHH
Confidence 45543
No 142
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=52.69 E-value=69 Score=30.27 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=26.0
Q ss_pred eeeEEeeChhhHHHHhcCccchhhcCCc--ceeee
Q 003075 217 ACGLVSLDPTKIAEILKDCPSWFRDCRC--LDVLS 249 (850)
Q Consensus 217 ~~glV~m~~~~LVe~lmD~~~W~~~f~~--~~~l~ 249 (850)
.+..|...+..+-+++-|.++|-+..|. ++++.
T Consensus 3 ~s~~i~ap~~~V~~~l~D~~~~p~~~p~~~~~~~~ 37 (142)
T cd08861 3 HSVTVAAPAEDVYDLLADAERWPEFLPTVHVERLE 37 (142)
T ss_pred EEEEEcCCHHHHHHHHHhHHhhhccCCCceEEEEE
Confidence 3556777899999999999999997784 45443
No 143
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=52.29 E-value=3.2e+02 Score=29.14 Aligned_cols=56 Identities=25% Similarity=0.443 Sum_probs=38.3
Q ss_pred CCCCCccccccCCCcceEEEEecCCCCCCCCCCccCCCCCCceeEEEeeecccccCChHHHHHHHhh--hhccccc
Q 003075 415 FLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HRSEWAD 488 (850)
Q Consensus 415 s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~lf~FLRd--~R~eWd~ 488 (850)
...++|..-.. .+||.|..++++. .++... -++ +|+ +.-|+.|++|+.+ +|.+||.
T Consensus 20 ~~~~~Wkl~k~--~~~~~v~~k~~~e--f~gkl~-R~E----gvv---------~~~~~ev~d~v~~~~~r~~Wd~ 77 (202)
T cd08902 20 ILEEEWRVAKK--SKDVTVWRKPSEE--FGGYLY-KAQ----GVV---------EDVYNRIVDHIRPGPYRLDWDS 77 (202)
T ss_pred ccccCcEEEEe--CCCEEEEEecCCc--CCCceE-EEE----EEe---------cCCHHHHHHHHhcccchhcccc
Confidence 36789986643 3899999998752 232210 011 343 5778999999998 8999997
No 144
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=52.22 E-value=3e+02 Score=28.82 Aligned_cols=72 Identities=14% Similarity=0.184 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhhccCCCCCCccccccCCCcceEEEEecCCCCCCCCCCccCCCCCCceeEEEeeecccccCChHHHHH
Q 003075 398 RTFSQRLSRGFNDAINGFLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVR 477 (850)
Q Consensus 398 ~~LaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~lf~ 477 (850)
.++++.....|-.-.+ ..++|.... .+.++++|.++..++ . | ---++-.-+ |+|++.|++
T Consensus 7 ~~~~~~~~~~~~~~~~--~~~~W~~~~-~~~~gi~v~s~~~~~-----~---------~--k~~k~e~~i-~~~~~~l~~ 66 (209)
T cd08905 7 IKQGEEALQKSLSILQ--DQEGWKTEI-VAENGDKVLSKVVPD-----I---------G--KVFRLEVVV-DQPLDNLYS 66 (209)
T ss_pred HHHHHHHHHHHHHHhc--cccCCEEEE-ecCCCCEEEEEEcCC-----C---------C--cEEEEEEEe-cCCHHHHHH
Confidence 3455555555544442 456898763 335677888765531 1 1 233445667 899999997
Q ss_pred HHhh---hhcccccc
Q 003075 478 FLRE---HRSEWADY 489 (850)
Q Consensus 478 FLRd---~R~eWd~~ 489 (850)
+|.+ .+.+|+..
T Consensus 67 ~l~~d~e~~~~W~~~ 81 (209)
T cd08905 67 ELVDRMEQMGEWNPN 81 (209)
T ss_pred HHHhchhhhceeccc
Confidence 7774 89999973
No 145
>PRK10884 SH3 domain-containing protein; Provisional
Probab=51.83 E-value=47 Score=35.22 Aligned_cols=40 Identities=18% Similarity=0.069 Sum_probs=30.4
Q ss_pred HHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003075 86 QTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (850)
Q Consensus 86 ~~~n~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~ 125 (850)
.+....|+.+|+.+++++..++.+...|+.||..++++..
T Consensus 131 ~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 131 DSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344557888888888888888888888888888887655
No 146
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=51.70 E-value=37 Score=32.42 Aligned_cols=39 Identities=21% Similarity=0.211 Sum_probs=29.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCC
Q 003075 91 KLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSAPA 129 (850)
Q Consensus 91 ~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~~~~~ 129 (850)
.+-.+-..|+.....+-.|-..|++||+.||+.|.....
T Consensus 19 ~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 19 QLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556667777777777778899999999988876543
No 147
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=51.66 E-value=34 Score=38.98 Aligned_cols=49 Identities=10% Similarity=0.027 Sum_probs=39.1
Q ss_pred HHHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccC
Q 003075 732 ALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKIL 784 (850)
Q Consensus 732 ~~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sa 784 (850)
..++.+++ .|++|+..+.+ -.+.|.|++|.++|++++++..+.+.....
T Consensus 98 ~~~~~~~~~~~~~i~~~d~~----g~i~~~N~~a~~l~g~~~~~~~g~~~~~~~ 147 (430)
T PRK11006 98 KRFRSGAESLPDAVVLTTEE----GNIFWCNGLAQQLLGFRWPEDNGQNILNLL 147 (430)
T ss_pred HHHHHHHHhCCCeEEEEcCC----CceeHHHHHHHHHhCCCChHhCCCcHHHHh
Confidence 44666664 78888888754 689999999999999999999988765444
No 148
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=51.52 E-value=54 Score=29.22 Aligned_cols=44 Identities=30% Similarity=0.361 Sum_probs=30.4
Q ss_pred HHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003075 82 ASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (850)
Q Consensus 82 ~~~l~~~n~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~ 125 (850)
-..++.++..|+.+|..+.+++..+..+.++|+.|-...+..+.
T Consensus 20 i~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 20 IALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777777777777777655555443
No 149
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=50.76 E-value=36 Score=40.59 Aligned_cols=30 Identities=23% Similarity=0.231 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhccCC
Q 003075 99 LMEENDRLQKQVSHLVYENGYMRQQLHSAP 128 (850)
Q Consensus 99 l~ee~~~l~~e~~~L~~En~~Lk~el~~~~ 128 (850)
|.....++.+|-++||.||+.||++|..+-
T Consensus 307 Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~ 336 (655)
T KOG4343|consen 307 LEARLQALLSENEQLKKENATLKRQLDELV 336 (655)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 444456677788889999999999987643
No 150
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=50.46 E-value=21 Score=42.38 Aligned_cols=37 Identities=32% Similarity=0.389 Sum_probs=25.0
Q ss_pred HHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 003075 84 RLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYM 120 (850)
Q Consensus 84 ~l~~~n~~l~aen~~l~ee~~~l~~e~~~L~~En~~L 120 (850)
.++..-.++.+||+.|+.||-.|..++..|..||..+
T Consensus 306 ~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~ 342 (655)
T KOG4343|consen 306 GLEARLQALLSENEQLKKENATLKRQLDELVSENQRL 342 (655)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccc
Confidence 4444455667777777777777777777777777654
No 151
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=50.05 E-value=34 Score=36.97 Aligned_cols=47 Identities=30% Similarity=0.364 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003075 79 RKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (850)
Q Consensus 79 kq~~~~l~~~n~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~ 125 (850)
-.++..++.+|+.|++.|+.|..++.++..++..++.|.+.++++.+
T Consensus 103 ~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~ 149 (292)
T KOG4005|consen 103 TEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQ 149 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHH
Confidence 44667788889999999999999998888888888888888877654
No 152
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.92 E-value=42 Score=29.79 Aligned_cols=42 Identities=26% Similarity=0.230 Sum_probs=28.2
Q ss_pred HHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003075 84 RLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (850)
Q Consensus 84 ~l~~~n~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~ 125 (850)
.++.+-+.|+.+|..+..|....+.....|+.||..||+|..
T Consensus 22 LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~ 63 (79)
T COG3074 22 LLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQN 63 (79)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777777776666666666677777877777643
No 153
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=47.39 E-value=63 Score=34.31 Aligned_cols=48 Identities=10% Similarity=0.095 Sum_probs=37.5
Q ss_pred HHHHh-cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCC
Q 003075 734 LKQLW-HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILD 785 (850)
Q Consensus 734 ~~~L~-~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae 785 (850)
++.++ +.|..|+..+.+ -..+|+|++|.++|++++++..+.|...-..
T Consensus 8 l~~~~~~~~~~i~~~d~~----g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~ 56 (333)
T TIGR02966 8 FRAAAQALPDAVVVLDEE----GQIEWCNPAAERLLGLRWPDDLGQRITNLIR 56 (333)
T ss_pred HHHHHHhCcCcEEEECCC----CcEEEEcHHHHHHhCCChHHHcCCcHHHHcc
Confidence 44444 478888887765 4699999999999999999999877655443
No 154
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=47.03 E-value=50 Score=30.03 Aligned_cols=42 Identities=29% Similarity=0.253 Sum_probs=26.7
Q ss_pred HHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003075 84 RLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (850)
Q Consensus 84 ~l~~~n~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~ 125 (850)
.++.+-+.++..|..+.++++.+...-..|..||..||+|..
T Consensus 22 LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~ 63 (79)
T PRK15422 22 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 63 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 345555666666666666666555545557777777777754
No 155
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=46.27 E-value=52 Score=31.71 Aligned_cols=38 Identities=21% Similarity=0.177 Sum_probs=28.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCC
Q 003075 91 KLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSAP 128 (850)
Q Consensus 91 ~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~~~~ 128 (850)
.+-.+-..|+.....+-.|...|+.||..||+.|.+..
T Consensus 19 ~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 19 VLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555566777777777777889999999999988753
No 156
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=45.71 E-value=32 Score=29.57 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=27.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003075 93 SAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (850)
Q Consensus 93 ~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~ 125 (850)
+.+-+.+++.+.+++.+..+|..||..||+...
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~ 45 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLLKQNAS 45 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345677888889999999999999999998754
No 157
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=45.39 E-value=55 Score=35.21 Aligned_cols=62 Identities=23% Similarity=0.416 Sum_probs=44.6
Q ss_pred hccCCCCCCccccccCCCcceEEEEecCCCCCCCCCCccCCCCCCceeE-EEeeecccccCChHHHHHHHhh--hhcccc
Q 003075 411 AINGFLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVL-CAKASMLLQNVPPALLVRFLRE--HRSEWA 487 (850)
Q Consensus 411 ~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl-~A~tS~~L~pvpp~~lf~FLRd--~R~eWd 487 (850)
+.-+-..++|..... .++|+|-.|...+ . |.++ .-++..-++.++++.++++|.| .|.+||
T Consensus 19 ~~~~~~~~~W~l~~~--~~gikVy~r~~~~-----s---------g~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd 82 (235)
T cd08872 19 ALEDVGADGWQLFAE--EGEMKVYRREVEE-----D---------GVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWE 82 (235)
T ss_pred HHccCCCCCCEEEEe--CCceEEEEEECCC-----C---------CceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHH
Confidence 444555668987642 4689998887642 1 1222 4677777866999999999998 899999
Q ss_pred c
Q 003075 488 D 488 (850)
Q Consensus 488 ~ 488 (850)
.
T Consensus 83 ~ 83 (235)
T cd08872 83 T 83 (235)
T ss_pred h
Confidence 6
No 158
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=45.03 E-value=2.2e+02 Score=26.44 Aligned_cols=110 Identities=15% Similarity=0.192 Sum_probs=63.2
Q ss_pred eeeeEEeeChhhHHHHhcCccchhhcCCcceeeeeccCCCccHHHHHHHhhcccccccccceeeEEeeccccCCCcEEEE
Q 003075 216 RACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVC 295 (850)
Q Consensus 216 R~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~~~G~waVv 295 (850)
..+-.|...+.++.+.|.|.+.|.+.+|.+.-+.++..+.+|.-.. .+.-....+.++.+.++|...- +... -.
T Consensus 5 ~~s~~i~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~i-~~ 78 (140)
T cd07819 5 SREFEIEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEM----VRIGVGAYGIKDTYALEYTWDG-AGSV-SW 78 (140)
T ss_pred EEEEEEeCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEE----EEEEEeeeeEEEEEEEEEEEcC-CCcE-EE
Confidence 3456788899999999999999999999876666555444332111 1111122244555556665532 2221 11
Q ss_pred EeecCCCCCCCCCCCCCccccccccccceeeeecCCCceEEEEEEeeeccC
Q 003075 296 ERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDA 346 (850)
Q Consensus 296 DvSld~~~~~~~~~~~~~f~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~ 346 (850)
.. .++ . .+.... .-.-+.+.++ +|+|||.-+++..-
T Consensus 79 ~~-~~~---~-------~~~~~~---~~~~~~~~~~-~t~vt~~~~~~~~~ 114 (140)
T cd07819 79 TL-VEG---E-------GNRSQE---GSYTLTPKGD-GTRVTFDLTVELTV 114 (140)
T ss_pred EE-ecc---c-------ceeEEE---EEEEEEECCC-CEEEEEEEEEEecC
Confidence 11 111 0 011111 2356788877 59999999998753
No 159
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=44.75 E-value=1.2e+02 Score=36.49 Aligned_cols=100 Identities=14% Similarity=0.213 Sum_probs=66.2
Q ss_pred HHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeE
Q 003075 734 LKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMC 812 (850)
Q Consensus 734 ~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 812 (850)
++.+++ -+++|++.+.+ =..+|.|+||.++|+++-+++.+.|-.--.... .+.++.++|-.. .....
T Consensus 82 L~aIL~sm~eGVi~vD~~----G~I~~iN~aA~~Llg~~~eel~Gk~i~eli~~~-------~l~~~le~~~~~-~~~~~ 149 (520)
T PRK10820 82 LSALLEALPEPVLSIDMK----GKVELANPASCQLFGQSEEKLRNHTAAQLINGF-------NFLRWLESEPQD-SHNEH 149 (520)
T ss_pred HHHHHHhCCCcEEEECCC----CeeeHhHHHHHHHHCcCHHHHCCCcHHHHcCcc-------hHHHHHHcCCCc-cceEE
Confidence 455554 69999999887 368999999999999998888887765444322 144556666542 22356
Q ss_pred EcCCCCeEEEcceEEeEeecCCCCe--eEEEEeecC
Q 003075 813 VSSMGRAVSYEQAVAWKVLDDDDSN--HCLAFMFMN 846 (850)
Q Consensus 813 iss~Grrf~i~~a~vW~l~d~~g~~--~gqAa~F~~ 846 (850)
+...|+.|.++-.-+. +.|++|.. .|.-.+|.+
T Consensus 150 v~~~g~~~~v~~~PI~-~~d~~g~~~~~GaVivlrd 184 (520)
T PRK10820 150 VVINGQDFLMEITPVY-LQDENDQHVLVGAVVMLRS 184 (520)
T ss_pred EEECCEEEEEEEEeee-ecCCCCceeEEEEEEEecc
Confidence 6667887776543332 22666664 677676643
No 160
>COG1415 Uncharacterized conserved protein [Function unknown]
Probab=43.78 E-value=1.2e+02 Score=34.86 Aligned_cols=126 Identities=25% Similarity=0.147 Sum_probs=86.2
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHH----------------------HHHHHhhCCCCCCCCCCC--hHHHHHHHhcCC
Q 003075 686 SRLGPHAGPKALPGSPEALTLARWIS----------------------RSYRIHTGGELLRADSLT--GDALLKQLWHHS 741 (850)
Q Consensus 686 ~~~~~~~~~~~~~~~pe~~~l~~~i~----------------------~Sy~~~~G~~L~~~~~~~--~~~~~~~L~~~~ 741 (850)
+.|..|.|-.+||.-+.+..|+..|+ |||-..+|.+--.+.+.+ --.+-+.|+.-.
T Consensus 7 AdLPLH~GhvP~wL~~rM~kLs~~i~elive~yG~~e~l~RlAdP~WFQsf~nviGmDW~SSGsTTv~~gaLK~~l~~~d 86 (373)
T COG1415 7 ADLPLHTGHVPPWLLPRMKKLSGAILELIVEEYGTDELLRRLADPFWFQSFNNVIGMDWDSSGSTTVTTGALKEALNPED 86 (373)
T ss_pred ccccccCCCCChHHHHHHHHHHHHHHHHHHHHhCcHHHHHHhcCcHHHHHHhhhhcccccCCCCeeeeHHHHHHhcCccc
Confidence 34677888888999999999888665 466667777764332221 122334667777
Q ss_pred CeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHH----HHHhccccCC-CeeEEcCC
Q 003075 742 DAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAK----IMQQGFAYLP-GGMCVSSM 816 (850)
Q Consensus 742 ~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~----v~~qG~~~~y-~GvRiss~ 816 (850)
.-|..|++| |-.+.+| -+|+..+--+.-+++.+=.+-.++.++ +.|+|| ++| .++=+|.+
T Consensus 87 lgi~V~GGK-------------G~~~~~t-p~El~~~ae~~~ld~~~l~~~SRlvAKvDn~~lQDGy-dLYhH~~vvse~ 151 (373)
T COG1415 87 LGIKVAGGK-------------GRNARKT-PDELESIAERFGLDAEKLVEASRLVAKVDNVLLQDGY-DLYHHTFVVSED 151 (373)
T ss_pred CceEEecCc-------------chhhccC-hHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHhcch-hheeEEEEEcCC
Confidence 888888888 2233333 356666666666677666666666666 578999 666 49999999
Q ss_pred CCeEEEcceE
Q 003075 817 GRAVSYEQAV 826 (850)
Q Consensus 817 Grrf~i~~a~ 826 (850)
|+-.-|.++.
T Consensus 152 G~w~VIQQGM 161 (373)
T COG1415 152 GRWAVIQQGM 161 (373)
T ss_pred CCEEEEEcCc
Confidence 9998888765
No 161
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=43.66 E-value=56 Score=35.97 Aligned_cols=32 Identities=13% Similarity=0.155 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhccCC
Q 003075 97 KLLMEENDRLQKQVSHLVYENGYMRQQLHSAP 128 (850)
Q Consensus 97 ~~l~ee~~~l~~e~~~L~~En~~Lk~el~~~~ 128 (850)
..+......|++|.+.|+.++..|++|+..+.
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~~~~ 249 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELATLR 249 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555666666666666666665543
No 162
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=43.26 E-value=32 Score=38.76 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=21.3
Q ss_pred EEEeecccCC----------CCCCCccccCceEEecCCcc
Q 003075 573 QLVFAPIDES----------FADDAPLLASGFRVIPLDSK 602 (850)
Q Consensus 573 ~vVyAPvD~~----------ds~~v~LLPSGF~I~P~~~~ 602 (850)
++|.-||-.+ .+=+|-.=|-|.-|-|.+++
T Consensus 337 ~~isg~v~~sit~l~~~~~l~~~~i~f~~~g~~v~~~g~~ 376 (420)
T PF07407_consen 337 YFISGPVGPSITCLMKTYALYSVEIVFGEKGLYVRPTGSK 376 (420)
T ss_pred ceEeccccchHHHHHHHhhhheeEEEEcCCceEEeccCCc
Confidence 5777777765 35567778889888886543
No 163
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=43.21 E-value=62 Score=38.37 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=16.1
Q ss_pred cCCHHHHHHHHHhHhcCCCCCHHHHHHHHH
Q 003075 23 RYTPEQVEALERVYSECPKPSSLRRQQLIR 52 (850)
Q Consensus 23 r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~ 52 (850)
.+|++++..|.- +.-.|...-|.-.++
T Consensus 41 ~ltpee~kalGi---egDTP~DTlrTlva~ 67 (472)
T TIGR03752 41 ELSPEELKALGI---EGDTPADTLRTLVAE 67 (472)
T ss_pred cCCcchhHhcCC---CCCCccchHHHHHHH
Confidence 577777766653 345666665555443
No 164
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=42.66 E-value=88 Score=33.70 Aligned_cols=46 Identities=24% Similarity=0.304 Sum_probs=30.9
Q ss_pred HHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCC
Q 003075 83 SRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSAP 128 (850)
Q Consensus 83 ~~l~~~n~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~~~~ 128 (850)
...+.++..|..++..+..+.+..+.+++.|+.||.+|.+++.+..
T Consensus 145 ~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 145 EELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 3344455556666666666666667777788888888888877654
No 165
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=40.66 E-value=1.7e+02 Score=24.20 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Q 003075 100 MEENDRLQKQVSHLVYENGYMRQ 122 (850)
Q Consensus 100 ~ee~~~l~~e~~~L~~En~~Lk~ 122 (850)
..+...|+.+..+|+.+++.|+.
T Consensus 31 e~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 31 EQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344444444444445554443
No 166
>PF15058 Speriolin_N: Speriolin N terminus
Probab=40.05 E-value=40 Score=35.39 Aligned_cols=39 Identities=33% Similarity=0.368 Sum_probs=28.4
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCC
Q 003075 90 RKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSAPA 129 (850)
Q Consensus 90 ~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~~~~~ 129 (850)
+-++...+.+..||++|+|++. |..||+.||.-|...+.
T Consensus 8 eGlrhqierLv~ENeeLKKlVr-LirEN~eLksaL~ea~~ 46 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKLVR-LIRENHELKSALGEACA 46 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHhhc
Confidence 3345566677788888888775 77789999988766554
No 167
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=39.85 E-value=68 Score=32.87 Aligned_cols=38 Identities=21% Similarity=0.328 Sum_probs=17.3
Q ss_pred HhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003075 87 TVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQL 124 (850)
Q Consensus 87 ~~n~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el 124 (850)
.+|..++.++..++++++.|++++..|..++..++++|
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY 141 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDY 141 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444443
No 168
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=38.61 E-value=85 Score=35.03 Aligned_cols=38 Identities=26% Similarity=0.290 Sum_probs=29.3
Q ss_pred HhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003075 87 TVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQL 124 (850)
Q Consensus 87 ~~n~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el 124 (850)
.+.+.+..+.+.+..+|++|..++++|..|..+||+=+
T Consensus 248 ae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli 285 (294)
T KOG4571|consen 248 AEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLI 285 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667778888888888888888888888888754
No 169
>PHA03155 hypothetical protein; Provisional
Probab=37.59 E-value=34 Score=33.02 Aligned_cols=25 Identities=24% Similarity=0.398 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhccC
Q 003075 103 NDRLQKQVSHLVYENGYMRQQLHSA 127 (850)
Q Consensus 103 ~~~l~~e~~~L~~En~~Lk~el~~~ 127 (850)
.++|.+++++|+.||..||+++.+-
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~~ 34 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQH 34 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4678899999999999999999653
No 170
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=37.43 E-value=1.7e+02 Score=25.93 Aligned_cols=39 Identities=18% Similarity=0.179 Sum_probs=21.1
Q ss_pred HhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003075 87 TVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (850)
Q Consensus 87 ~~n~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~ 125 (850)
..+..+..+++...........+..+|+.|+..|++||+
T Consensus 26 ~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 26 IENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444455667777777777664
No 171
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=35.90 E-value=3.4e+02 Score=24.91 Aligned_cols=32 Identities=22% Similarity=0.194 Sum_probs=25.5
Q ss_pred eeeEEeeChhhHHHHhcCccchhhcCCcceee
Q 003075 217 ACGLVSLDPTKIAEILKDCPSWFRDCRCLDVL 248 (850)
Q Consensus 217 ~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l 248 (850)
.+.+|...+.++-+.+.|...|.+.++.+...
T Consensus 4 ~~~~i~ap~~~Vw~~~~d~~~~~~w~~~~~~~ 35 (141)
T cd07822 4 TEIEINAPPEKVWEVLTDFPSYPEWNPFVRSA 35 (141)
T ss_pred EEEEecCCHHHHHHHHhccccccccChhheeE
Confidence 45667788999999999999998888765433
No 172
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=35.74 E-value=61 Score=35.96 Aligned_cols=37 Identities=27% Similarity=0.249 Sum_probs=25.0
Q ss_pred HHHhhHHHHHHHHH---HHHHHHHHHHHhHHHHHhhccCC
Q 003075 92 LSAMNKLLMEENDR---LQKQVSHLVYENGYMRQQLHSAP 128 (850)
Q Consensus 92 l~aen~~l~ee~~~---l~~e~~~L~~En~~Lk~el~~~~ 128 (850)
+..+|+.+++++.+ ...+++.|+.||.+||+.|.-..
T Consensus 71 ~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~~~ 110 (284)
T COG1792 71 LALENEELKKELAELEQLLEEVESLEEENKRLKELLDFKE 110 (284)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 44455555555533 35567789999999999987543
No 173
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=35.06 E-value=15 Score=31.69 Aligned_cols=43 Identities=28% Similarity=0.423 Sum_probs=29.2
Q ss_pred CCcccCCHHHHHHHHHhH-hcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhh
Q 003075 19 TKYVRYTPEQVEALERVY-SECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQ 70 (850)
Q Consensus 19 rkR~r~T~~Ql~~LE~~F-~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQ 70 (850)
++|.+||+++...+-..+ .. .....++|+++ ||++.++..|-.
T Consensus 2 ~~r~~ys~e~K~~~v~~~~~~-----g~sv~~va~~~----gi~~~~l~~W~~ 45 (76)
T PF01527_consen 2 RKRRRYSPEFKLQAVREYLES-----GESVSEVAREY----GISPSTLYNWRK 45 (76)
T ss_dssp -SS----HHHHHHHHHHHHHH-----HCHHHHHHHHH----TS-HHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHC-----CCceEeeeccc----ccccccccHHHH
Confidence 466789999888776666 33 35788999999 999999999953
No 174
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=34.94 E-value=42 Score=32.72 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhccCCC
Q 003075 103 NDRLQKQVSHLVYENGYMRQQLHSAPA 129 (850)
Q Consensus 103 ~~~l~~e~~~L~~En~~Lk~el~~~~~ 129 (850)
+++|..++++|++||..||+++.+-..
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~~~ 31 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQSVG 31 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 467889999999999999999987553
No 175
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=34.49 E-value=94 Score=33.96 Aligned_cols=43 Identities=14% Similarity=0.164 Sum_probs=29.8
Q ss_pred HHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccC
Q 003075 85 LQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSA 127 (850)
Q Consensus 85 l~~~n~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~~~ 127 (850)
.+..|..|..+.....+++..++.|+..|+..|-.|.+.+-=+
T Consensus 91 FR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 91 FRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYL 133 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666667777777777778888888888888776543
No 176
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=34.42 E-value=1.9e+02 Score=33.62 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003075 99 LMEENDRLQKQVSHLVYENGYMRQQLH 125 (850)
Q Consensus 99 l~ee~~~l~~e~~~L~~En~~Lk~el~ 125 (850)
+++|.+.+.+++...+.|.+.|+.+++
T Consensus 354 Lrkerd~L~keLeekkreleql~~q~~ 380 (442)
T PF06637_consen 354 LRKERDSLAKELEEKKRELEQLKMQLA 380 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555556666666654
No 177
>PHA03162 hypothetical protein; Provisional
Probab=34.30 E-value=41 Score=33.27 Aligned_cols=25 Identities=16% Similarity=0.392 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhccC
Q 003075 103 NDRLQKQVSHLVYENGYMRQQLHSA 127 (850)
Q Consensus 103 ~~~l~~e~~~L~~En~~Lk~el~~~ 127 (850)
+++|..|+++|++||..||+++.+-
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~~ 39 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKEG 39 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678899999999999999999653
No 178
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=33.58 E-value=56 Score=24.94 Aligned_cols=43 Identities=9% Similarity=0.134 Sum_probs=33.5
Q ss_pred cCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhH
Q 003075 23 RYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRC 74 (850)
Q Consensus 23 r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRa 74 (850)
.+++.+...++..|... ..-.++|.++ |++...|+.|...-+.
T Consensus 10 ~l~~~~~~~~~~~~~~~-----~~~~~ia~~~----~~s~~~i~~~~~~~~~ 52 (55)
T cd06171 10 KLPEREREVILLRFGEG-----LSYEEIAEIL----GISRSTVRQRLHRALK 52 (55)
T ss_pred hCCHHHHHHHHHHHhcC-----CCHHHHHHHH----CcCHHHHHHHHHHHHH
Confidence 57888889998887543 3467789999 9999999999865443
No 179
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=33.10 E-value=65 Score=27.89 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhHHHHHhhc
Q 003075 107 QKQVSHLVYENGYMRQQLH 125 (850)
Q Consensus 107 ~~e~~~L~~En~~Lk~el~ 125 (850)
++++.+++.||..|+++++
T Consensus 30 ~~~i~~l~~e~~~L~~ei~ 48 (80)
T PF04977_consen 30 QKEIEELKKENEELKEEIE 48 (80)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 180
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=33.04 E-value=59 Score=30.88 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=14.5
Q ss_pred HHHhhhHHHHhhHHHHHHHHHHHHHHHHHH
Q 003075 85 LQTVNRKLSAMNKLLMEENDRLQKQVSHLV 114 (850)
Q Consensus 85 l~~~n~~l~aen~~l~ee~~~l~~e~~~L~ 114 (850)
++++-..++.+++.++++|++|+.+++.|+
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444555555555555555555444
No 181
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=32.00 E-value=61 Score=27.23 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHhHhcCC--CCCHHHHHHHHHhCCccCCCChhhh
Q 003075 24 YTPEQVEALERVYSECP--KPSSLRRQQLIRECPILSNIEPKQI 65 (850)
Q Consensus 24 ~T~~Ql~~LE~~F~~~~--~Ps~~~r~~LA~~L~~~~gL~~rQV 65 (850)
+|+.|.+.|...|+..- +|-...-.+||.+| |+++.-+
T Consensus 1 LT~~Q~e~L~~A~~~GYfd~PR~~tl~elA~~l----gis~st~ 40 (53)
T PF04967_consen 1 LTDRQREILKAAYELGYFDVPRRITLEELAEEL----GISKSTV 40 (53)
T ss_pred CCHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHh----CCCHHHH
Confidence 58999999999999874 57778889999999 9998654
No 182
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=31.44 E-value=3.8e+02 Score=27.44 Aligned_cols=30 Identities=30% Similarity=0.327 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003075 96 NKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (850)
Q Consensus 96 n~~l~ee~~~l~~e~~~L~~En~~Lk~el~ 125 (850)
-+.++.+.+.+..++.+|..+|..|...+.
T Consensus 84 Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~ 113 (158)
T PF09744_consen 84 EDQWRQERKDLQSQVEQLEEENRQLELKLK 113 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355666666677777777777776665543
No 183
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=31.39 E-value=1.3e+02 Score=35.89 Aligned_cols=43 Identities=14% Similarity=0.239 Sum_probs=31.0
Q ss_pred HHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 003075 84 RLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHS 126 (850)
Q Consensus 84 ~l~~~n~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~~ 126 (850)
.++.+-++++.+.+.+....+.++.+++.|..||+.|+++++.
T Consensus 80 ELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 80 QMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555656666677788888999999999999864
No 184
>PRK10884 SH3 domain-containing protein; Provisional
Probab=30.66 E-value=1.3e+02 Score=32.04 Aligned_cols=36 Identities=22% Similarity=0.152 Sum_probs=22.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccC
Q 003075 92 LSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSA 127 (850)
Q Consensus 92 l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~~~ 127 (850)
.......++++|+++.++++.++.|+..|+.+++..
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444466777777777777777776666666543
No 185
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=30.54 E-value=1.5e+02 Score=33.76 Aligned_cols=62 Identities=29% Similarity=0.336 Sum_probs=38.8
Q ss_pred hhhhhhhHHHHHHH--HHHHHHHhhhHHHHhhHH---HHHHHHHHHHHHHHHHHHhHHHHHhhccCC
Q 003075 67 VWFQNRRCREKQRK--EASRLQTVNRKLSAMNKL---LMEENDRLQKQVSHLVYENGYMRQQLHSAP 128 (850)
Q Consensus 67 vWFQNRRak~Krkq--~~~~l~~~n~~l~aen~~---l~ee~~~l~~e~~~L~~En~~Lk~el~~~~ 128 (850)
-||=-=|-|+|+-+ ....++..-.|+...++- ++|..++.+.+.++|+..|+.|+.||-++.
T Consensus 53 gwff~i~~re~qlk~aa~~llq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~ 119 (401)
T PF06785_consen 53 GWFFAIGRREKQLKTAAGQLLQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVR 119 (401)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 47755555555522 333455555566555544 445556667778888888888888887643
No 186
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=30.29 E-value=1.6e+02 Score=35.00 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=10.5
Q ss_pred HHHHHhhhHHHHhhHHHHH
Q 003075 83 SRLQTVNRKLSAMNKLLME 101 (850)
Q Consensus 83 ~~l~~~n~~l~aen~~l~e 101 (850)
..+..+|+.|+++|+.|++
T Consensus 76 ~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 76 AKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555566666665555
No 187
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=30.21 E-value=67 Score=29.93 Aligned_cols=21 Identities=10% Similarity=0.327 Sum_probs=17.1
Q ss_pred HHHHHHhCCccCCCChhhhhhhhhh
Q 003075 47 RQQLIRECPILSNIEPKQIKVWFQN 71 (850)
Q Consensus 47 r~~LA~~L~~~~gL~~rQVkvWFQN 71 (850)
..++|+.+ |++++.++.|-++
T Consensus 3 i~EvA~~~----gVs~~tLR~ye~~ 23 (99)
T cd04765 3 IGEVAEIL----GLPPHVLRYWETE 23 (99)
T ss_pred HHHHHHHH----CcCHHHHHHHHHH
Confidence 35678888 9999999999765
No 188
>PRK03975 tfx putative transcriptional regulator; Provisional
Probab=30.11 E-value=1.5e+02 Score=29.83 Aligned_cols=48 Identities=15% Similarity=0.052 Sum_probs=37.4
Q ss_pred cccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003075 21 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (850)
Q Consensus 21 R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 78 (850)
...+|+.|.+.|+..+ +. ....++|..+ |++...|+.|-++.+.+.|+
T Consensus 4 ~~~Lt~rqreVL~lr~-~G-----lTq~EIAe~L----GiS~~tVs~ie~ra~kkLr~ 51 (141)
T PRK03975 4 ESFLTERQIEVLRLRE-RG-----LTQQEIADIL----GTSRANVSSIEKRARENIEK 51 (141)
T ss_pred ccCCCHHHHHHHHHHH-cC-----CCHHHHHHHH----CCCHHHHHHHHHHHHHHHHH
Confidence 4578999999998843 22 3577899999 99999999998866655444
No 189
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=30.09 E-value=1.3e+02 Score=32.31 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhHHHHHhhcc
Q 003075 107 QKQVSHLVYENGYMRQQLHS 126 (850)
Q Consensus 107 ~~e~~~L~~En~~Lk~el~~ 126 (850)
+.|..+|..|+..|+++++.
T Consensus 192 ~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 192 QDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred ccHHHHHHHHHHHHHHHHhc
Confidence 33344455555555555543
No 190
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=29.14 E-value=2e+02 Score=30.41 Aligned_cols=32 Identities=34% Similarity=0.394 Sum_probs=16.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHhhHHHHHHH
Q 003075 71 NRRCREKQRKEASRLQTVNRKLSAMNKLLMEEN 103 (850)
Q Consensus 71 NRRak~Krkq~~~~l~~~n~~l~aen~~l~ee~ 103 (850)
|||.+..- .+-..++..|.+|..+|+.|++..
T Consensus 47 NrrlQ~hl-~EIR~LKe~NqkLqedNqELRdLC 78 (195)
T PF10226_consen 47 NRRLQQHL-NEIRGLKEVNQKLQEDNQELRDLC 78 (195)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554332 233345555556666665555543
No 191
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=28.74 E-value=1.8e+02 Score=25.58 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=12.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHH
Q 003075 91 KLSAMNKLLMEENDRLQKQVSHLVYENGY 119 (850)
Q Consensus 91 ~l~aen~~l~ee~~~l~~e~~~L~~En~~ 119 (850)
.++.+|..++++...+..+-.+|...|..
T Consensus 18 ~L~~EN~~Lr~q~~~~~~ER~~L~ekne~ 46 (65)
T TIGR02449 18 RLKSENRLLRAQEKTWREERAQLLEKNEQ 46 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 192
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=28.65 E-value=76 Score=26.74 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhHHHHHhhccC
Q 003075 105 RLQKQVSHLVYENGYMRQQLHSA 127 (850)
Q Consensus 105 ~l~~e~~~L~~En~~Lk~el~~~ 127 (850)
...+++..|..||..|+.+|++.
T Consensus 26 ~a~~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 26 AARKRLSKLEGENRLLRAELERL 48 (52)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888898888888754
No 193
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=27.04 E-value=4.9e+02 Score=23.82 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=28.8
Q ss_pred eeeEEeeChhhHHHHhcCccchhhcCCcceeeeecc
Q 003075 217 ACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIP 252 (850)
Q Consensus 217 ~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~ 252 (850)
.+..|...+.++-+.|.|...|.+-+|.+..+....
T Consensus 6 ~~~~v~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~ 41 (139)
T PF10604_consen 6 VSIEVPAPPEAVWDLLSDPENWPRWWPGVKSVELLS 41 (139)
T ss_dssp EEEEESS-HHHHHHHHTTTTGGGGTSTTEEEEEEEE
T ss_pred EEEEECCCHHHHHHHHhChhhhhhhhhceEEEEEcc
Confidence 345778899999999999999999899887666555
No 194
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=26.72 E-value=72 Score=25.33 Aligned_cols=41 Identities=15% Similarity=0.285 Sum_probs=20.8
Q ss_pred CcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhh
Q 003075 20 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWF 69 (850)
Q Consensus 20 kR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWF 69 (850)
+++.+|.+|...++..+++. ....+||+.+ |.++..|.-+.
T Consensus 1 ~~~~Lt~~eR~~I~~l~~~G-----~s~~~IA~~l----g~s~sTV~rel 41 (44)
T PF13936_consen 1 KYKHLTPEERNQIEALLEQG-----MSIREIAKRL----GRSRSTVSREL 41 (44)
T ss_dssp -----------HHHHHHCS--------HHHHHHHT----T--HHHHHHHH
T ss_pred CccchhhhHHHHHHHHHHcC-----CCHHHHHHHH----CcCcHHHHHHH
Confidence 35689999999999998755 4677799999 99998887654
No 195
>cd00569 HTH_Hin_like Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed helical bundle. The principal DNA-protein interface is formed by the third helix, the recognition helix, inserting itself into the major groove of the DNA. A diverse array of HTH domains participate in a variety of functions that depend on their DNA-binding properties. HTH_Hin represents one of the simplest versions of the HTH domains; the characterization of homologous relationships between various sequence-diverse HTH domain families remains difficult. The Hin recombinase induces the site-specific inversion of a chromosomal DNA segment containing a promoter, which controls the alternate expression of two genes by reversibly switching orientation. The Hin recombinase consists of a single polypeptide chain containing a D
Probab=26.27 E-value=1.3e+02 Score=20.25 Aligned_cols=40 Identities=18% Similarity=0.316 Sum_probs=28.0
Q ss_pred cccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhh
Q 003075 21 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWF 69 (850)
Q Consensus 21 R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWF 69 (850)
+..++.++...+...|.... ...++++.+ +++...|..|.
T Consensus 3 ~~~~~~~~~~~i~~~~~~~~-----s~~~ia~~~----~is~~tv~~~~ 42 (42)
T cd00569 3 PPKLTPEQIEEARRLLAAGE-----SVAEIARRL----GVSRSTLYRYL 42 (42)
T ss_pred CCcCCHHHHHHHHHHHHcCC-----CHHHHHHHH----CCCHHHHHHhC
Confidence 34567777777777776432 466788888 99988887773
No 196
>COG2202 AtoS FOG: PAS/PAC domain [Signal transduction mechanisms]
Probab=26.21 E-value=4.6e+02 Score=23.23 Aligned_cols=78 Identities=14% Similarity=-0.012 Sum_probs=49.4
Q ss_pred hcCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHH--HHHHHHHHHHhccccCCCeeEEcC
Q 003075 738 WHHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKI--LCTEFAKIMQQGFAYLPGGMCVSS 815 (850)
Q Consensus 738 ~~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~e--r~~lL~~v~~qG~~~~y~GvRiss 815 (850)
...+..++..+. +-.+.|.|+++.++++++-.+....+............ ...........+.........+..
T Consensus 119 ~~~~~~~~~~d~----~~~~~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (232)
T COG2202 119 EASPDGIWVLDE----DGRILYANPAAEELLGYSPEEELGRGLSDLIHPEDEERRELELARALAEGRGGPLEIEYRVRRK 194 (232)
T ss_pred hhCCceEEEEeC----CCCEEEeCHHHHHHhCCChHHhcCCChhheEecCCCchhhHHHHHHhhccCCCCcceEEEEEec
Confidence 445666666655 36899999999999999988888666555443332221 222222233344445556667778
Q ss_pred CCCe
Q 003075 816 MGRA 819 (850)
Q Consensus 816 ~Grr 819 (850)
.|++
T Consensus 195 ~g~~ 198 (232)
T COG2202 195 DGER 198 (232)
T ss_pred CCCE
Confidence 8887
No 197
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=25.58 E-value=57 Score=26.57 Aligned_cols=37 Identities=32% Similarity=0.401 Sum_probs=13.4
Q ss_pred hhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003075 88 VNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQL 124 (850)
Q Consensus 88 ~n~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el 124 (850)
.|..+...|..+.-....+++++.+|..||..||++.
T Consensus 8 qn~~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 8 QNRELAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ----------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 4566777788888888899999999999999999875
No 198
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=25.38 E-value=1.2e+02 Score=24.07 Aligned_cols=39 Identities=15% Similarity=0.294 Sum_probs=30.5
Q ss_pred cCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhh
Q 003075 23 RYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQ 70 (850)
Q Consensus 23 r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQ 70 (850)
.+++.+.+.|...|-+. ..-.++|..+ |++...|+.+..
T Consensus 4 ~L~~~er~vi~~~y~~~-----~t~~eIa~~l----g~s~~~V~~~~~ 42 (50)
T PF04545_consen 4 QLPPREREVIRLRYFEG-----LTLEEIAERL----GISRSTVRRILK 42 (50)
T ss_dssp TS-HHHHHHHHHHHTST------SHHHHHHHH----TSCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHhcCC-----CCHHHHHHHH----CCcHHHHHHHHH
Confidence 57899999999999443 3577899999 999998887754
No 199
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=25.37 E-value=2.5e+02 Score=25.65 Aligned_cols=43 Identities=19% Similarity=0.221 Sum_probs=28.9
Q ss_pred HHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccC
Q 003075 85 LQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSA 127 (850)
Q Consensus 85 l~~~n~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~~~ 127 (850)
+..+-..|......|....+..+.+..+|+.||..|++-+..+
T Consensus 21 Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 21 LIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555556666666677777788888998888877654
No 200
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=25.22 E-value=3.3e+02 Score=31.58 Aligned_cols=91 Identities=8% Similarity=0.060 Sum_probs=54.9
Q ss_pred cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHH---HHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEEcC
Q 003075 739 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLV---ALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSS 815 (850)
Q Consensus 739 ~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~---el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss 815 (850)
..+++|+.-+.+ =..+|.|++|.++|+++-. +..+-+...- .....+.++.+.|-... ...+..
T Consensus 229 ~~~~gIi~~D~~----g~I~~~N~~a~~llg~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~~~~~~ 295 (542)
T PRK11086 229 SIKEGVIAVDDR----GEVTLINDEAKRLFNYKKGLEDDPLGTDVESW-------MPVSRLKEVLRTGTPRR--DEEINI 295 (542)
T ss_pred HhcCcEEEECCC----CeEEEEhHHHHHHhCCCcCCcccccCCcHHHh-------CCchhHHHHHhcCCCcc--ceEEEE
Confidence 468888887765 5789999999999966521 2222111111 11234566666664432 234455
Q ss_pred CCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003075 816 MGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 816 ~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
.|+.+.+... .+.| +|...|.-.+|.+
T Consensus 296 ~g~~~~~~~~---pi~~-~g~~~g~v~~~rD 322 (542)
T PRK11086 296 NGRLLLTNTV---PVRV-NGEIIGAIATFRD 322 (542)
T ss_pred CCEEEEEEEE---EEeE-CCEEEEEEEEEEE
Confidence 6777776543 3345 7888888887754
No 201
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=25.09 E-value=1.4e+02 Score=28.63 Aligned_cols=37 Identities=30% Similarity=0.333 Sum_probs=22.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCC
Q 003075 92 LSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSAP 128 (850)
Q Consensus 92 l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~~~~ 128 (850)
+...-..+-++...+++++..|..||+.|+-|.+.+.
T Consensus 13 le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr 49 (107)
T PF06156_consen 13 LEQQLGQLLEELEELKKQLQELLEENARLRIENEHLR 49 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666666666666666666666543
No 202
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=24.95 E-value=4.2e+02 Score=25.07 Aligned_cols=38 Identities=21% Similarity=0.317 Sum_probs=28.2
Q ss_pred CcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhH
Q 003075 20 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRC 74 (850)
Q Consensus 20 kR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRa 74 (850)
.+..|+..++..|. .....+.+ |++-++|+-.+.....
T Consensus 34 ~yR~Y~~~d~~~l~-------------~I~~lr~~----G~sl~eI~~~l~~~~~ 71 (116)
T cd04769 34 NYRVYDAQHVECLR-------------FIKEARQL----GFTLAELKAIFAGHEG 71 (116)
T ss_pred CceeeCHHHHHHHH-------------HHHHHHHc----CCCHHHHHHHHhcccc
Confidence 56678999888884 23335677 9999999998876654
No 203
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=24.90 E-value=1.7e+02 Score=30.12 Aligned_cols=47 Identities=23% Similarity=0.320 Sum_probs=25.0
Q ss_pred HHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 003075 80 KEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHS 126 (850)
Q Consensus 80 q~~~~l~~~n~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~~ 126 (850)
+++..++.++.+++.+++.|.+++++++++.+.+..+...|-.-++|
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~R 150 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDR 150 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555554444444443
No 204
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=24.75 E-value=1.1e+02 Score=27.67 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHh
Q 003075 98 LLMEENDRLQKQVSHLVYENGYMRQQ 123 (850)
Q Consensus 98 ~l~ee~~~l~~e~~~L~~En~~Lk~e 123 (850)
.+.+||.+|+++++.|..|.+.++.+
T Consensus 4 ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666666666666666666666665
No 205
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=24.67 E-value=1.9e+02 Score=30.22 Aligned_cols=43 Identities=23% Similarity=0.290 Sum_probs=23.9
Q ss_pred HHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003075 83 SRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (850)
Q Consensus 83 ~~l~~~n~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~ 125 (850)
..+.+.|.-|+...+..+.+|+.|..++++|..+-.++++||.
T Consensus 77 ~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 77 EELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555554
No 206
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=24.37 E-value=2.2e+02 Score=33.81 Aligned_cols=97 Identities=19% Similarity=0.233 Sum_probs=57.2
Q ss_pred ccCCHHHHHHHHHh-HhcC-CCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHH-HHHH--HHHH-HHHHhhhHHHHh
Q 003075 22 VRYTPEQVEALERV-YSEC-PKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCR-EKQR--KEAS-RLQTVNRKLSAM 95 (850)
Q Consensus 22 ~r~T~~Ql~~LE~~-F~~~-~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak-~Krk--q~~~-~l~~~n~~l~ae 95 (850)
-++|.+....|.+. |... .+|-.+.-+++-++. +-=-.|+|.+ ++|| |+.. .++.......++
T Consensus 219 L~LteeEkrLL~kEG~slPs~lPLTKaEEriLKrv-----------RRKIrNK~SAQESRrkKkeYid~LE~rv~~~tae 287 (472)
T KOG0709|consen 219 LVLTEEEKRLLTKEGYSLPSKLPLTKAEERILKRV-----------RRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAE 287 (472)
T ss_pred eeccHHHHHHHHhccCcCcccCCchHHHHHHHHHH-----------HHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccC
Confidence 35777777777654 2222 456555555544333 3233455433 2222 2222 345556677888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCC
Q 003075 96 NKLLMEENDRLQKQVSHLVYENGYMRQQLHSAPA 129 (850)
Q Consensus 96 n~~l~ee~~~l~~e~~~L~~En~~Lk~el~~~~~ 129 (850)
|..|++..++++.+.+.|..+...|+........
T Consensus 288 NqeL~kkV~~Le~~N~sLl~qL~klQt~v~q~an 321 (472)
T KOG0709|consen 288 NQELQKKVEELELSNRSLLAQLKKLQTLVIQVAN 321 (472)
T ss_pred cHHHHHHHHHHhhccHHHHHHHHHHHHHHhhccc
Confidence 8888888888888877777777777766655443
No 207
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=23.76 E-value=3.6e+02 Score=33.86 Aligned_cols=96 Identities=17% Similarity=0.258 Sum_probs=53.9
Q ss_pred cCChHHHHHHHhh---hhcccccccccchhhhhhccCCCCCCCCCCCCCCCcceEeeccccCCCCceEEEEEecCCCCCc
Q 003075 469 NVPPALLVRFLRE---HRSEWADYGVDAYSAACLKASPYAVPCARPGGFPSSHVILPLAHTVEHEEFLEVVRLEGHAFSP 545 (850)
Q Consensus 469 pvpp~~lf~FLRd---~R~eWd~~~~d~~s~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~ 545 (850)
+.+|+.||++|-+ .|.|||.. +. + .+.+-+| +...+|.--++...-.
T Consensus 236 ~aspE~Ifd~Vm~~~~~R~eWD~~----~~-----~---------------~~vIE~I----D~htdI~Y~~~~~~~~-- 285 (719)
T PLN00188 236 EATCEEIFELVMSMDGTRFEWDCS----FQ-----Y---------------GSLVEEV----DGHTAILYHRLQLDWF-- 285 (719)
T ss_pred cCCHHHHHHHHhccCcccccchhc----cc-----c---------------eEEEEEe----cCCeEEEEEEeccccc--
Confidence 7899999999974 89999963 11 1 2333333 3233444333321100
Q ss_pred cccccccceEeEeeccCcCCCCCCceeEEE-eecccCCC----CCCC--ccccCceEEecC
Q 003075 546 EDVALARDMYLLQLCSGIDENTVGACAQLV-FAPIDESF----ADDA--PLLASGFRVIPL 599 (850)
Q Consensus 546 ~~~~~s~~~liLQe~~~~De~~~Gs~s~vV-yAPvD~~d----s~~v--~LLPSGF~I~P~ 599 (850)
-.-+-+||-.++.-- --+ ..| ++++ |-+|.-.. +.+| -+-|+||.|.|+
T Consensus 286 ~~~ispRDFV~~Ryw-rr~--eDG--sYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL 341 (719)
T PLN00188 286 PMFVWPRDLCYVRYW-RRN--DDG--SYVVLFRSREHENCGPQPGFVRAHLESGGFNISPL 341 (719)
T ss_pred cCccCcceeEEEEEE-EEc--CCC--cEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEEC
Confidence 012445677777652 122 335 4554 55555542 3333 378999999996
No 208
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=23.60 E-value=5.7e+02 Score=23.32 Aligned_cols=37 Identities=11% Similarity=-0.044 Sum_probs=28.9
Q ss_pred eeEEeeChhhHHHHhcCccchhhcCCcceeeeeccCC
Q 003075 218 CGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTG 254 (850)
Q Consensus 218 ~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g 254 (850)
+..|...+.++-++|-|.++|.+-.|.+..+...+.+
T Consensus 4 ~~~i~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~ 40 (140)
T cd08865 4 SIVIERPVEEVFAYLADFENAPEWDPGVVEVEKITDG 40 (140)
T ss_pred EEEEcCCHHHHHHHHHCccchhhhccCceEEEEcCCC
Confidence 4456778889999999999999988887666655433
No 209
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=23.46 E-value=3.9e+02 Score=24.17 Aligned_cols=74 Identities=12% Similarity=0.198 Sum_probs=39.6
Q ss_pred HHHHHHhCCccCCCChhhhhhhhhhhhHHHHHH---------HHHHHHHHhhhHHHH-hh---HHHHHHHHHHHHHHHHH
Q 003075 47 RQQLIRECPILSNIEPKQIKVWFQNRRCREKQR---------KEASRLQTVNRKLSA-MN---KLLMEENDRLQKQVSHL 113 (850)
Q Consensus 47 r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krk---------q~~~~l~~~n~~l~a-en---~~l~ee~~~l~~e~~~L 113 (850)
..++|+.+ |++++.++.|-+..--+-++. ..-..++. -..++. .. +.++ +.-.+..+++.|
T Consensus 4 i~e~A~~~----gvs~~tLr~ye~~Gli~p~r~~~g~R~y~~~dv~~l~~-i~~L~~d~g~~l~~i~-~~l~l~~~~~~l 77 (91)
T cd04766 4 ISVAAELS----GMHPQTLRLYERLGLLSPSRTDGGTRRYSERDIERLRR-IQRLTQELGVNLAGVK-RILELEEELAEL 77 (91)
T ss_pred HHHHHHHH----CcCHHHHHHHHHCCCcCCCcCCCCCeeECHHHHHHHHH-HHHHHHHcCCCHHHHH-HHHHHHHHHHHH
Confidence 45778888 999999999976443221110 00001110 011222 11 1111 112367777888
Q ss_pred HHHhHHHHHhhcc
Q 003075 114 VYENGYMRQQLHS 126 (850)
Q Consensus 114 ~~En~~Lk~el~~ 126 (850)
+.+++.|++++.+
T Consensus 78 ~~~l~~l~~~~~~ 90 (91)
T cd04766 78 RAELDELRARLRR 90 (91)
T ss_pred HHHHHHHHHHhcc
Confidence 8888888888764
No 210
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=23.40 E-value=1.4e+02 Score=26.35 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=7.8
Q ss_pred HHHHHHHHHHhHHHHHhhc
Q 003075 107 QKQVSHLVYENGYMRQQLH 125 (850)
Q Consensus 107 ~~e~~~L~~En~~Lk~el~ 125 (850)
+.+..+++.||..|+.|..
T Consensus 37 ~~~~~~l~~en~~L~~ei~ 55 (85)
T TIGR02209 37 QLEIDKLQKEWRDLQLEVA 55 (85)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444433
No 211
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=23.26 E-value=95 Score=35.18 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=8.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHH
Q 003075 92 LSAMNKLLMEENDRLQKQVSH 112 (850)
Q Consensus 92 l~aen~~l~ee~~~l~~e~~~ 112 (850)
|+.||..|++||++|..++.+
T Consensus 37 Lr~EN~~LKkEN~~Lk~eVer 57 (420)
T PF07407_consen 37 LRMENHSLKKENNDLKIEVER 57 (420)
T ss_pred HHHHhHHHHHHHHHHHHHHHH
Confidence 333444444444444333333
No 212
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=22.90 E-value=2.6e+02 Score=32.88 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=35.8
Q ss_pred HHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 003075 82 ASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHS 126 (850)
Q Consensus 82 ~~~l~~~n~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~~ 126 (850)
.+.+..++..++++.+.++......+-++++|+.||..|.+|.-+
T Consensus 29 ~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 29 QSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677888888888888888888888888898888888766
No 213
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=22.87 E-value=1.8e+02 Score=32.28 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=15.1
Q ss_pred HHHHHHHHHhHHHHHhhccCC
Q 003075 108 KQVSHLVYENGYMRQQLHSAP 128 (850)
Q Consensus 108 ~e~~~L~~En~~Lk~el~~~~ 128 (850)
+++..|..|..++|.||+|..
T Consensus 109 kqie~Leqelkr~KsELErsQ 129 (307)
T PF10481_consen 109 KQIEKLEQELKRCKSELERSQ 129 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345567777888888888754
No 214
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=22.72 E-value=1.9e+02 Score=30.57 Aligned_cols=40 Identities=28% Similarity=0.330 Sum_probs=20.1
Q ss_pred HHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003075 86 QTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (850)
Q Consensus 86 ~~~n~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~ 125 (850)
...+.+|.+.++.+.+|+..+..+++.|..||..+..+.+
T Consensus 80 EE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~ 119 (193)
T PF14662_consen 80 EEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERD 119 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Confidence 3344445555555555555555555555555555554444
No 215
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.68 E-value=2.2e+02 Score=29.41 Aligned_cols=33 Identities=27% Similarity=0.289 Sum_probs=19.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 003075 94 AMNKLLMEENDRLQKQVSHLVYENGYMRQQLHS 126 (850)
Q Consensus 94 aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~~ 126 (850)
.+++...+|.+++++++.+...|...||.|.+.
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666666543
No 216
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=22.31 E-value=1.5e+02 Score=28.63 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=23.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003075 92 LSAMNKLLMEENDRLQKQVSHLVYENGYMRQ 122 (850)
Q Consensus 92 l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~ 122 (850)
.+.|-+.|++.+.+|.....+|+.||.-||.
T Consensus 65 VREEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 65 VREEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455677777778888888888888888774
No 217
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=22.14 E-value=3.2e+02 Score=24.19 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=18.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003075 91 KLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (850)
Q Consensus 91 ~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~ 125 (850)
.....++.|+.|.+....+++....+|..|++|++
T Consensus 23 ~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e 57 (69)
T PF14197_consen 23 VHEIENKRLRRERDSAERQLGDAYEENNKLKEENE 57 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555666666554
No 218
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=21.16 E-value=5.6e+02 Score=22.32 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=13.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003075 93 SAMNKLLMEENDRLQKQVSHLVYENGYMRQQL 124 (850)
Q Consensus 93 ~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el 124 (850)
+..|.......+..++....|..+...|+.++
T Consensus 24 k~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 24 KSANLAFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444444444
No 219
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.86 E-value=2.7e+02 Score=31.97 Aligned_cols=43 Identities=19% Similarity=0.162 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003075 79 RKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMR 121 (850)
Q Consensus 79 kq~~~~l~~~n~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk 121 (850)
+++-..+..+.+.++...+.+++-..+|+.+.+.|..+-..|+
T Consensus 224 eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~ 266 (365)
T KOG2391|consen 224 EEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQ 266 (365)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555555555555544444444444444433333
No 220
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=20.58 E-value=31 Score=45.16 Aligned_cols=55 Identities=15% Similarity=0.129 Sum_probs=50.0
Q ss_pred CcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003075 20 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (850)
Q Consensus 20 kR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 78 (850)
.+++++.-|...|..+|+...+|.-.++..++.-| ++..|.+..|||++++++.+
T Consensus 447 ~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L----~vhmRskhp~~~~~~c~~gq 501 (1406)
T KOG1146|consen 447 ESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTL----GVHMRSKHPESQSAYCKAGQ 501 (1406)
T ss_pred hhhcccccceeeeecccccccCCccchhhhhHHHh----hhcccccccccchhHhHhcc
Confidence 36788889999999999999999999999999999 99999999999998888775
No 221
>PRK09644 RNA polymerase sigma factor SigM; Provisional
Probab=20.27 E-value=1.6e+02 Score=29.04 Aligned_cols=39 Identities=8% Similarity=-0.016 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhh
Q 003075 24 YTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQN 71 (850)
Q Consensus 24 ~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQN 71 (850)
+++.|.+.+...|-+. ....++|..+ |+++..|+.|.+.
T Consensus 109 L~~~~r~v~~l~~~~g-----~s~~eIA~~l----gis~~tv~~~l~R 147 (165)
T PRK09644 109 LPVIEAQAILLCDVHE-----LTYEEAASVL----DLKLNTYKSHLFR 147 (165)
T ss_pred CCHHHHHHHHhHHHhc-----CCHHHHHHHH----CCCHHHHHHHHHH
Confidence 4455555554332222 2466778888 8888888888753
No 222
>KOG3755 consensus SATB1 matrix attachment region binding protein [Transcription]
Probab=20.16 E-value=38 Score=40.90 Aligned_cols=72 Identities=19% Similarity=0.260 Sum_probs=0.0
Q ss_pred chhhcccCCCCCCCcccCCHHHHHHHHHh-HhcCCCCCHHHHHHHHHhCCccC-----CCChhhhhhhhhhhhHHHHHHH
Q 003075 7 NKEFANKQIMDSTKYVRYTPEQVEALERV-YSECPKPSSLRRQQLIRECPILS-----NIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 7 ~~e~~~~~~~~~rkR~r~T~~Ql~~LE~~-F~~~~~Ps~~~r~~LA~~L~~~~-----gL~~rQVkvWFQNRRak~Krkq 80 (850)
....+..-...|+++.+|-.+|...+... |-++.+++.....+--.++ ++ ..+.+.|++||.|||.++|+-+
T Consensus 681 ~~~LSa~~~~pk~~~~k~f~~~~~ev~~~w~~k~~s~s~~~v~eYkee~--~~~~~~e~~~~kn~~~~fk~~~ee~~~~k 758 (769)
T KOG3755|consen 681 IKTLSAQLDLPKKTIIKFFQNQRYEVKHHWKLKTRSGSWVDVAEYKEEE--LLMPYEEKFESKNVQFWFKVRREEEKRLK 758 (769)
T ss_pred cchhhhhhcccHHHHHHhhhcceeecchhheecccCchhHHHHHhhHHh--hcchhhhhhhhcchHHHHHHHHHHHhhhh
Done!