Query 003075
Match_columns 850
No_of_seqs 395 out of 1590
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 12:24:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003075.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003075hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r55_A STAR-related lipid tran 99.8 3.1E-19 1.1E-23 184.1 16.1 198 163-378 21-229 (231)
2 2h1k_A IPF-1, pancreatic and d 99.6 1E-15 3.5E-20 128.4 6.3 60 17-80 3-62 (63)
3 2cue_A Paired box protein PAX6 99.6 2.5E-15 8.6E-20 131.9 9.0 64 15-82 5-68 (80)
4 1ig7_A Homeotic protein MSX-1; 99.6 1.8E-15 6.1E-20 124.6 7.1 57 18-78 1-57 (58)
5 3a01_A Homeodomain-containing 99.6 2E-15 6.9E-20 136.4 7.9 63 16-82 16-78 (93)
6 2vi6_A Homeobox protein nanog; 99.6 6.6E-16 2.3E-20 129.1 4.1 60 17-80 3-62 (62)
7 2e1o_A Homeobox protein PRH; D 99.6 2.5E-15 8.5E-20 128.6 7.6 61 16-80 6-66 (70)
8 1nk2_P Homeobox protein VND; h 99.6 3.1E-15 1.1E-19 130.4 8.4 63 16-82 8-70 (77)
9 2dmu_A Homeobox protein goosec 99.6 1.9E-15 6.5E-20 129.3 6.7 61 16-80 6-66 (70)
10 2hdd_A Protein (engrailed home 99.6 1.5E-15 5.3E-20 126.4 6.0 58 17-78 3-60 (61)
11 1ahd_P Antennapedia protein mu 99.6 1.7E-15 6E-20 129.0 6.1 60 17-80 2-61 (68)
12 2dmq_A LIM/homeobox protein LH 99.6 3.6E-15 1.2E-19 130.6 8.2 63 15-81 5-67 (80)
13 2dmt_A Homeobox protein BARH-l 99.6 2.2E-15 7.6E-20 132.2 6.6 62 15-80 15-76 (80)
14 2da2_A Alpha-fetoprotein enhan 99.6 1.9E-15 6.4E-20 129.2 6.0 62 15-80 5-66 (70)
15 2cra_A Homeobox protein HOX-B1 99.6 1.9E-15 6.7E-20 129.3 5.7 61 16-80 6-66 (70)
16 2dms_A Homeobox protein OTX2; 99.6 3.2E-15 1.1E-19 131.2 7.2 62 16-81 6-67 (80)
17 1jgg_A Segmentation protein EV 99.6 2.7E-15 9.2E-20 124.6 6.0 58 18-79 2-59 (60)
18 2da3_A Alpha-fetoprotein enhan 99.6 2E-15 6.8E-20 132.0 5.5 61 16-80 16-76 (80)
19 1ftt_A TTF-1 HD, thyroid trans 99.6 3.3E-15 1.1E-19 127.2 6.5 60 17-80 2-61 (68)
20 1yz8_P Pituitary homeobox 2; D 99.6 2.1E-15 7.2E-20 128.4 5.2 61 17-81 3-63 (68)
21 2da1_A Alpha-fetoprotein enhan 99.6 2.6E-15 8.8E-20 128.3 5.7 61 16-80 6-66 (70)
22 2r5y_A Homeotic protein sex co 99.6 3.3E-15 1.1E-19 133.4 6.5 61 16-80 27-87 (88)
23 1zq3_P PRD-4, homeotic bicoid 99.5 5.4E-15 1.9E-19 125.9 7.3 61 17-81 2-62 (68)
24 1puf_A HOX-1.7, homeobox prote 99.5 6.5E-15 2.2E-19 128.3 7.8 62 16-81 12-73 (77)
25 2djn_A Homeobox protein DLX-5; 99.5 3.1E-15 1.1E-19 128.0 5.6 62 15-80 5-66 (70)
26 3a02_A Homeobox protein arista 99.5 2.7E-15 9.3E-20 124.5 5.0 58 19-80 1-58 (60)
27 2hi3_A Homeodomain-only protei 99.5 6.7E-15 2.3E-19 127.0 7.3 60 17-80 2-62 (73)
28 1uhs_A HOP, homeodomain only p 99.5 6.6E-15 2.2E-19 126.7 7.1 59 18-80 2-61 (72)
29 1b8i_A Ultrabithorax, protein 99.5 3.6E-15 1.2E-19 131.4 5.5 62 15-80 18-79 (81)
30 3rkq_A Homeobox protein NKX-2. 99.5 5.2E-15 1.8E-19 121.4 6.0 57 17-77 2-58 (58)
31 1bw5_A ISL-1HD, insulin gene e 99.5 2.6E-15 8.7E-20 127.0 4.3 60 17-80 3-62 (66)
32 1fjl_A Paired protein; DNA-bin 99.5 8E-15 2.8E-19 128.9 7.6 62 16-81 17-78 (81)
33 2kt0_A Nanog, homeobox protein 99.5 3.6E-15 1.2E-19 131.8 5.1 61 16-80 21-81 (84)
34 3a03_A T-cell leukemia homeobo 99.5 6.1E-15 2.1E-19 121.0 6.0 54 22-79 2-55 (56)
35 2ecc_A Homeobox and leucine zi 99.5 7.8E-15 2.7E-19 127.9 7.0 58 19-80 5-62 (76)
36 2da4_A Hypothetical protein DK 99.5 4.7E-15 1.6E-19 130.1 5.5 61 16-80 7-71 (80)
37 2k40_A Homeobox expressed in E 99.5 6.2E-15 2.1E-19 125.0 6.0 60 18-81 2-61 (67)
38 1wh5_A ZF-HD homeobox family p 99.5 4.3E-15 1.5E-19 130.8 5.1 59 16-78 16-78 (80)
39 2l7z_A Homeobox protein HOX-A1 99.5 6.5E-15 2.2E-19 127.2 6.0 59 17-79 7-65 (73)
40 2da5_A Zinc fingers and homeob 99.5 7.2E-15 2.5E-19 127.6 6.2 59 18-80 8-66 (75)
41 1akh_A Protein (mating-type pr 99.5 6.1E-15 2.1E-19 122.6 4.7 58 16-77 4-61 (61)
42 2ecb_A Zinc fingers and homeob 99.5 1E-14 3.5E-19 131.0 6.2 61 18-82 12-72 (89)
43 2m0c_A Homeobox protein arista 99.5 9.4E-15 3.2E-19 126.1 5.7 62 16-81 8-69 (75)
44 2ly9_A Zinc fingers and homeob 99.5 1.2E-14 4.1E-19 125.4 5.4 61 17-81 6-66 (74)
45 1b72_A Protein (homeobox prote 99.5 1.9E-14 6.5E-19 130.8 6.8 62 16-81 33-94 (97)
46 1wh7_A ZF-HD homeobox family p 99.5 8.4E-15 2.9E-19 129.1 4.2 58 16-78 16-78 (80)
47 2dn0_A Zinc fingers and homeob 99.5 9.8E-15 3.3E-19 126.9 4.4 60 17-80 8-67 (76)
48 2cuf_A FLJ21616 protein; homeo 99.5 3E-14 1E-18 129.0 7.0 62 16-81 6-82 (95)
49 1k61_A Mating-type protein alp 99.5 2.8E-14 9.6E-19 118.3 6.0 55 20-78 1-58 (60)
50 1puf_B PRE-B-cell leukemia tra 99.5 3E-14 1E-18 122.8 6.2 60 18-81 2-64 (73)
51 3nar_A ZHX1, zinc fingers and 99.5 3.1E-14 1.1E-18 129.2 6.3 60 17-80 25-84 (96)
52 1x2n_A Homeobox protein pknox1 99.5 5.8E-14 2E-18 121.0 7.3 61 16-80 6-69 (73)
53 1b72_B Protein (PBX1); homeodo 99.5 5.8E-14 2E-18 124.9 7.3 60 18-81 2-64 (87)
54 1du6_A PBX1, homeobox protein 99.5 1.7E-14 5.8E-19 121.1 3.5 58 17-78 3-63 (64)
55 2cqx_A LAG1 longevity assuranc 99.5 2.4E-14 8.4E-19 123.6 3.7 57 18-78 9-66 (72)
56 2dmp_A Zinc fingers and homeob 99.4 6.7E-14 2.3E-18 125.5 6.3 59 18-80 14-72 (89)
57 2l9r_A Homeobox protein NKX-3. 99.4 5.4E-14 1.9E-18 120.6 4.0 56 22-81 9-64 (69)
58 3nau_A Zinc fingers and homeob 99.4 1.2E-13 4.2E-18 117.0 5.7 53 24-80 11-63 (66)
59 1mnm_C Protein (MAT alpha-2 tr 99.4 1.4E-13 4.7E-18 122.7 6.2 57 17-77 27-86 (87)
60 1le8_B Mating-type protein alp 99.4 1.2E-13 4.1E-18 122.1 5.6 59 18-80 3-64 (83)
61 2dmn_A Homeobox protein TGIF2L 99.4 2.2E-13 7.4E-18 120.6 7.1 62 15-80 5-69 (83)
62 1lfb_A Liver transcription fac 99.4 7.3E-14 2.5E-18 127.8 3.8 63 16-82 8-91 (99)
63 1au7_A Protein PIT-1, GHF-1; c 99.4 8.3E-14 2.8E-18 135.7 4.4 60 16-79 86-145 (146)
64 1wi3_A DNA-binding protein SAT 99.4 2.7E-13 9.1E-18 115.1 6.6 57 15-75 5-62 (71)
65 2e19_A Transcription factor 8; 99.4 1.4E-13 4.6E-18 116.4 4.8 55 20-78 6-60 (64)
66 1e3o_C Octamer-binding transcr 99.4 1.2E-13 4.3E-18 136.3 4.8 60 16-79 100-159 (160)
67 2da6_A Hepatocyte nuclear fact 99.4 4.7E-13 1.6E-17 122.7 7.4 67 16-82 5-88 (102)
68 3d1n_I POU domain, class 6, tr 99.4 3.2E-13 1.1E-17 132.1 6.3 59 16-78 92-150 (151)
69 2xsd_C POU domain, class 3, tr 99.4 1.8E-13 6E-18 135.9 4.4 61 16-80 98-158 (164)
70 1x2m_A LAG1 longevity assuranc 99.4 1.7E-13 5.9E-18 115.8 3.4 49 26-78 9-58 (64)
71 2pso_A STAR-related lipid tran 99.4 1.2E-12 4.2E-17 136.5 9.9 176 169-357 33-210 (237)
72 3l1p_A POU domain, class 5, tr 99.4 5E-13 1.7E-17 131.4 6.3 59 16-78 95-153 (155)
73 1em2_A MLN64 protein; beta bar 99.4 4.6E-12 1.6E-16 130.4 13.6 197 164-378 21-226 (229)
74 3p0l_A Steroidogenic acute reg 99.3 9.4E-12 3.2E-16 127.6 14.1 195 165-376 11-213 (221)
75 2d5v_A Hepatocyte nuclear fact 99.3 8.5E-13 2.9E-17 130.6 4.0 61 16-80 96-156 (164)
76 3k2a_A Homeobox protein MEIS2; 99.3 2.1E-12 7.3E-17 109.8 5.0 54 23-80 4-60 (67)
77 1ic8_A Hepatocyte nuclear fact 99.1 2E-11 6.8E-16 124.2 1.7 59 16-78 114-193 (194)
78 2lk2_A Homeobox protein TGIF1; 99.0 1.9E-10 6.6E-15 103.0 6.5 54 22-79 10-66 (89)
79 2da7_A Zinc finger homeobox pr 99.0 1.8E-10 6E-15 98.4 5.1 46 26-75 14-59 (71)
80 1ln1_A PC-TP, phosphatidylchol 99.0 8E-10 2.7E-14 111.8 8.5 150 213-377 52-209 (214)
81 3fo5_A Thioesterase, adipose a 98.9 7.2E-10 2.5E-14 117.4 7.1 128 214-353 89-223 (258)
82 2h8r_A Hepatocyte nuclear fact 98.9 7.7E-10 2.6E-14 114.0 4.8 57 16-76 141-218 (221)
83 1jss_A Stard4, cholesterol-reg 98.8 1.4E-08 4.7E-13 104.5 12.5 190 165-376 25-222 (224)
84 1mh3_A Maltose binding-A1 home 98.8 6.8E-10 2.3E-14 122.2 2.9 56 18-77 366-421 (421)
85 2e3n_A Lipid-transfer protein 98.4 1E-06 3.4E-11 92.1 11.9 198 165-376 23-245 (255)
86 3qsz_A STAR-related lipid tran 98.4 6.1E-07 2.1E-11 89.2 9.7 126 213-351 27-155 (189)
87 2nzz_A Penetratin conjugated G 98.3 1.2E-07 4.1E-12 71.6 -0.0 20 63-82 1-20 (37)
88 4eet_B Phototropin-2; LOV, blu 97.5 0.00095 3.3E-08 56.5 11.7 106 739-846 5-110 (115)
89 3t50_A Blue-light-activated hi 97.5 0.00084 2.9E-08 58.9 11.6 105 739-846 5-110 (128)
90 3lyx_A Sensory BOX/ggdef domai 97.5 0.0018 6.3E-08 54.5 12.9 112 730-846 5-117 (124)
91 3ue6_A Aureochrome1; PAS/LOV d 97.4 0.0014 4.9E-08 60.1 12.3 112 733-846 36-148 (166)
92 1n9l_A PHOT-LOV1, putative blu 97.3 0.0016 5.6E-08 57.2 11.2 104 741-846 3-106 (109)
93 2gj3_A Nitrogen fixation regul 97.3 0.002 7E-08 56.9 11.9 108 732-846 5-115 (120)
94 4hia_A LOV protein; PAS, HTH, 97.3 0.0016 5.4E-08 61.2 11.0 112 733-846 8-120 (176)
95 3p7n_A Sensor histidine kinase 97.1 0.0021 7.3E-08 65.1 11.4 112 732-846 63-176 (258)
96 3sw1_A Sensory box protein; li 97.1 0.0029 9.8E-08 58.0 10.9 114 731-846 24-138 (162)
97 3luq_A Sensor protein; PAS, hi 97.1 0.0015 5E-08 55.4 8.3 109 732-846 3-112 (114)
98 1byw_A Protein (human ERG pota 97.1 0.0052 1.8E-07 50.4 11.4 93 753-846 12-106 (110)
99 2z6d_A Phototropin-2; PAS-fold 97.1 0.0048 1.6E-07 52.1 11.3 111 734-846 8-119 (130)
100 3f1p_A Endothelial PAS domain- 97.1 0.005 1.7E-07 53.7 11.5 101 740-845 8-109 (117)
101 3d72_A Vivid PAS protein VVD; 97.0 0.004 1.4E-07 56.4 11.0 106 737-845 31-148 (149)
102 3mqq_A Transcriptional regulat 96.9 0.0028 9.5E-08 55.7 8.5 105 734-845 5-111 (120)
103 3kx0_X Uncharacterized protein 96.7 0.0035 1.2E-07 60.4 8.1 111 730-846 35-151 (185)
104 1d06_A Nitrogen fixation regul 96.7 0.012 4.1E-07 52.6 11.2 89 734-826 18-111 (130)
105 2l0w_A Potassium voltage-gated 96.7 0.02 6.7E-07 49.3 11.9 111 734-846 22-134 (138)
106 3k3c_A Protein RV1364C/MT1410; 96.7 0.0046 1.6E-07 56.7 8.2 110 731-846 16-131 (158)
107 2r78_A Sensor protein; sensory 96.6 0.0057 2E-07 54.2 8.2 91 730-825 9-100 (117)
108 2pr5_A Blue-light photorecepto 96.5 0.019 6.4E-07 51.4 11.3 103 739-845 7-109 (132)
109 2v0u_A NPH1-1, LOV2; kinase, t 96.5 0.022 7.6E-07 49.3 11.3 106 739-846 10-115 (146)
110 2r55_A STAR-related lipid tran 96.5 0.19 6.6E-06 51.1 19.9 149 394-598 21-180 (231)
111 2wkq_A NPH1-1, RAS-related C3 96.4 0.019 6.6E-07 60.3 12.1 107 738-846 18-124 (332)
112 3f1p_B ARYL hydrocarbon recept 96.3 0.013 4.5E-07 51.4 8.9 101 739-845 10-113 (121)
113 3ewk_A Sensor protein; PAS dom 96.2 0.046 1.6E-06 54.3 13.3 105 737-846 117-227 (227)
114 3mxq_A Sensor protein; PSI2, M 96.1 0.028 9.5E-07 54.2 10.4 108 733-846 23-143 (152)
115 2vv6_A FIXL, sensor protein FI 96.1 0.039 1.3E-06 48.3 10.4 83 740-826 2-88 (119)
116 3ewk_A Sensor protein; PAS dom 96.0 0.021 7.3E-07 56.8 9.5 93 753-846 7-99 (227)
117 3eeh_A Putative light and redo 95.9 0.067 2.3E-06 45.0 11.0 109 732-846 11-123 (125)
118 3olo_A Two-component sensor hi 95.9 0.054 1.9E-06 46.1 10.5 82 734-824 15-97 (118)
119 3fc7_A HTR-like protein, senso 95.9 0.03 1E-06 48.4 8.9 104 732-846 19-123 (125)
120 3nja_A Probable ggdef family p 95.8 0.025 8.7E-07 48.3 7.9 108 734-846 9-119 (125)
121 2kdk_A ARYL hydrocarbon recept 95.7 0.046 1.6E-06 47.4 9.3 99 739-842 11-111 (121)
122 3icy_A Sensor protein; sensory 95.6 0.044 1.5E-06 46.6 8.5 110 731-845 3-115 (118)
123 3b33_A Sensor protein; structu 95.6 0.034 1.2E-06 47.9 7.8 104 734-846 9-113 (115)
124 3mjq_A Uncharacterized protein 95.5 0.071 2.4E-06 45.8 9.7 99 739-845 7-105 (126)
125 3bwl_A Sensor protein; structu 94.8 0.11 3.7E-06 45.4 8.6 85 732-823 17-104 (126)
126 1jss_A Stard4, cholesterol-reg 94.6 0.96 3.3E-05 45.9 16.5 144 397-598 26-175 (224)
127 2pso_A STAR-related lipid tran 94.4 1.4 5E-05 45.3 17.4 174 416-685 48-227 (237)
128 1v9y_A Heme PAS sensor protein 94.3 0.16 5.5E-06 45.8 8.8 98 734-837 42-144 (167)
129 3mfx_A Sensory BOX/ggdef famil 94.1 0.075 2.6E-06 49.2 6.2 87 734-824 9-103 (129)
130 3h9w_A Diguanylate cyclase wit 94.0 0.24 8.2E-06 42.7 9.0 90 754-845 13-104 (115)
131 3p0l_A Steroidogenic acute reg 93.9 1.9 6.5E-05 43.5 16.9 192 397-684 12-213 (221)
132 4hi4_A Aerotaxis transducer AE 93.9 0.41 1.4E-05 42.3 10.6 96 736-846 10-117 (121)
133 1ll8_A PAS kinase; PAS domain, 93.8 0.031 1.1E-06 48.5 3.0 82 740-824 7-92 (114)
134 3a0s_A Sensor protein; PAS-fol 93.6 0.72 2.5E-05 36.4 10.7 92 741-845 2-95 (96)
135 3qsz_A STAR-related lipid tran 93.5 2.5 8.5E-05 41.2 16.4 54 418-489 3-58 (189)
136 3fo5_A Thioesterase, adipose a 93.1 1.1 3.7E-05 47.2 13.9 149 390-598 43-200 (258)
137 1ln1_A PC-TP, phosphatidylchol 93.1 2.4 8.1E-05 42.1 15.7 67 405-488 13-83 (214)
138 3fg8_A Uncharacterized protein 92.2 0.26 8.9E-06 43.3 6.6 63 739-805 20-82 (118)
139 1em2_A MLN64 protein; beta bar 92.2 5.4 0.00018 40.2 17.2 128 417-598 41-177 (229)
140 2d4r_A Hypothetical protein TT 91.4 1.3 4.5E-05 39.7 10.6 140 217-379 6-146 (147)
141 1hjb_A Ccaat/enhancer binding 89.8 0.63 2.2E-05 41.5 6.5 48 73-127 29-76 (87)
142 3vol_A Aerotaxis transducer AE 89.5 1.7 6E-05 43.9 10.7 114 716-846 8-134 (233)
143 4f3l_A Mclock, circadian locom 89.1 1.5 5.2E-05 47.6 10.4 91 753-844 259-350 (361)
144 2w0n_A Sensor protein DCUS; si 88.1 0.74 2.5E-05 38.7 5.7 97 733-846 16-116 (118)
145 1gu4_A CAAT/enhancer binding p 87.6 1.1 3.9E-05 39.0 6.5 46 73-125 29-74 (78)
146 2ys9_A Homeobox and leucine zi 87.3 0.5 1.7E-05 40.4 3.9 43 25-71 14-56 (70)
147 1ci6_A Transcription factor AT 86.9 1.5 5.1E-05 36.6 6.6 45 73-124 16-60 (63)
148 4eho_A Bacteriophytochrome, PA 86.4 1.2 4.1E-05 52.4 8.0 105 736-846 523-627 (635)
149 2vlg_A Sporulation kinase A; h 85.9 1.9 6.4E-05 38.7 7.4 78 739-824 7-85 (111)
150 1t2k_D Cyclic-AMP-dependent tr 84.4 2.5 8.6E-05 34.8 6.8 34 91-124 26-59 (61)
151 2wt7_A Proto-oncogene protein 84.1 2.5 8.4E-05 35.2 6.6 45 73-124 16-60 (63)
152 2jhe_A Transcription regulator 82.8 1.4 4.8E-05 41.8 5.4 89 733-836 81-170 (190)
153 1t2k_D Cyclic-AMP-dependent tr 82.0 5.5 0.00019 32.7 7.9 44 73-116 15-58 (61)
154 3mr0_A Sensory box histidine k 78.4 9.9 0.00034 34.0 9.3 107 734-846 11-121 (142)
155 1jnm_A Proto-oncogene C-JUN; B 76.8 3.2 0.00011 34.3 4.9 33 92-124 27-59 (62)
156 2wt7_B Transcription factor MA 76.5 10 0.00035 33.9 8.3 63 59-125 17-79 (90)
157 3a0r_A Sensor protein; four he 74.8 5.7 0.00019 41.3 7.5 95 739-846 16-112 (349)
158 3rty_A Period circadian protei 73.3 13 0.00045 40.3 10.1 81 753-835 162-248 (339)
159 1gd2_E Transcription factor PA 72.5 6 0.00021 33.8 5.6 52 69-120 14-69 (70)
160 1hjb_A Ccaat/enhancer binding 70.8 15 0.00053 32.6 8.0 39 90-128 32-70 (87)
161 2jee_A YIIU; FTSZ, septum, coi 69.7 9.2 0.00031 33.6 6.2 42 84-125 24-65 (81)
162 2qkp_A Uncharacterized protein 69.6 15 0.00053 34.6 8.5 106 732-847 19-130 (151)
163 3tfz_A Cyclase; helix-GRIP, BE 69.4 17 0.00058 34.9 8.9 122 216-358 8-130 (172)
164 1jnm_A Proto-oncogene C-JUN; B 69.0 8.8 0.0003 31.6 5.8 42 73-114 15-56 (62)
165 2w6a_A ARF GTPase-activating p 68.9 11 0.00039 31.0 6.2 32 91-122 31-62 (63)
166 2wt7_A Proto-oncogene protein 68.9 20 0.00068 29.6 7.9 29 97-125 26-54 (63)
167 4f3l_B BMAL1B; BHLH, PAS, circ 68.4 18 0.00061 39.6 9.9 89 754-844 287-378 (387)
168 2dgc_A Protein (GCN4); basic d 67.3 7.1 0.00024 32.5 4.9 15 110-124 46-60 (63)
169 1gu4_A CAAT/enhancer binding p 66.9 20 0.00067 31.2 7.7 38 91-128 33-70 (78)
170 3s9g_A Protein hexim1; cyclin 66.6 13 0.00044 33.7 6.6 37 89-125 53-89 (104)
171 1ci6_A Transcription factor AT 66.1 20 0.00069 29.7 7.4 33 93-125 22-54 (63)
172 3cax_A Uncharacterized protein 65.3 21 0.00073 38.7 9.7 105 732-847 239-344 (369)
173 2jn6_A Protein CGL2762, transp 64.7 5.6 0.00019 34.7 4.0 85 22-130 4-88 (97)
174 1t17_A Conserved hypothetical 61.4 25 0.00086 32.4 8.2 138 216-378 5-145 (148)
175 3p9v_A Uncharacterized protein 61.2 31 0.0011 32.7 9.0 142 216-378 10-152 (161)
176 3a5t_A Transcription factor MA 57.4 3.3 0.00011 38.2 1.2 67 59-129 27-93 (107)
177 2j5u_A MREC protein; bacterial 56.8 7.5 0.00026 40.7 4.0 39 85-127 24-62 (255)
178 2e3n_A Lipid-transfer protein 53.3 12 0.0004 38.4 4.7 58 416-489 45-105 (255)
179 3m91_A Proteasome-associated A 52.8 21 0.00072 28.7 5.0 37 91-127 13-49 (51)
180 1dh3_A Transcription factor CR 51.8 37 0.0013 27.4 6.4 24 103-126 24-47 (55)
181 2yy0_A C-MYC-binding protein; 51.3 21 0.00073 28.7 4.9 34 93-126 18-51 (53)
182 1nwz_A PYP, photoactive yellow 49.1 81 0.0028 29.4 9.3 96 738-840 24-120 (125)
183 1a93_B MAX protein, coiled coi 48.9 22 0.00076 26.3 4.1 28 98-125 4-31 (34)
184 3tvq_A Multifunctional cyclase 48.8 1.1E+02 0.0038 29.5 10.7 38 216-253 6-43 (169)
185 2wt7_B Transcription factor MA 48.6 34 0.0012 30.6 6.2 43 74-116 42-84 (90)
186 2glo_A Brinker CG9653-PA; prot 46.1 23 0.00078 28.1 4.4 46 20-70 2-47 (59)
187 1t6f_A Geminin; coiled-coil, c 46.1 27 0.00092 26.0 4.2 28 95-122 8-35 (37)
188 3s9g_A Protein hexim1; cyclin 45.9 1.1E+02 0.0038 27.7 9.0 47 79-125 50-96 (104)
189 1mzu_A PPR; photoactive yellow 45.9 87 0.003 29.5 9.0 95 739-840 30-125 (129)
190 1dh3_A Transcription factor CR 45.6 16 0.00055 29.5 3.4 22 103-124 31-52 (55)
191 2oa5_A Hypothetical protein BQ 41.5 18 0.0006 33.5 3.3 24 103-126 10-33 (110)
192 1go4_E MAD1 (mitotic arrest de 41.1 71 0.0024 29.1 7.2 22 106-127 73-94 (100)
193 2oqq_A Transcription factor HY 41.1 53 0.0018 25.3 5.2 34 92-125 8-41 (42)
194 3hnw_A Uncharacterized protein 40.6 73 0.0025 30.4 7.7 40 85-124 94-133 (138)
195 1deb_A APC protein, adenomatou 38.7 24 0.0008 28.3 3.1 22 104-125 6-27 (54)
196 3he5_B Synzip2; heterodimeric 38.6 57 0.0019 25.2 5.2 33 92-124 15-47 (52)
197 3he5_B Synzip2; heterodimeric 38.3 1.1E+02 0.0036 23.8 6.6 39 89-127 5-43 (52)
198 3m9b_A Proteasome-associated A 37.5 36 0.0012 35.7 5.3 32 90-121 64-95 (251)
199 1gd2_E Transcription factor PA 37.4 79 0.0027 26.9 6.5 28 97-124 39-66 (70)
200 3gpv_A Transcriptional regulat 36.8 1.4E+02 0.0048 28.2 9.1 37 19-72 50-86 (148)
201 4f3l_A Mclock, circadian locom 36.1 47 0.0016 35.8 6.3 65 730-798 84-149 (361)
202 1dip_A Delta-sleep-inducing pe 36.0 30 0.001 29.8 3.6 33 93-125 14-46 (78)
203 1hlv_A CENP-B, major centromer 35.7 57 0.002 29.4 6.0 50 19-75 3-52 (131)
204 3gdi_A Period circadian protei 35.7 44 0.0015 35.7 5.9 76 754-831 174-251 (309)
205 2dgc_A Protein (GCN4); basic d 35.4 1.1E+02 0.0038 25.3 7.0 19 106-124 35-53 (63)
206 1nkp_B MAX protein, MYC proto- 34.5 45 0.0015 28.7 4.7 32 97-128 50-81 (83)
207 4dj2_A Period circadian protei 34.4 1.6E+02 0.0056 31.4 10.2 78 754-833 185-265 (320)
208 4dj3_A Period circadian protei 33.8 1.2E+02 0.004 32.5 8.9 79 753-833 182-264 (317)
209 1jko_C HIN recombinase, DNA-in 33.7 29 0.00099 25.6 3.0 42 23-73 5-46 (52)
210 1xsv_A Hypothetical UPF0122 pr 33.6 1.2E+02 0.0042 27.2 7.8 48 22-78 24-71 (113)
211 1s7o_A Hypothetical UPF0122 pr 33.5 1E+02 0.0036 27.9 7.3 48 22-78 21-68 (113)
212 3hnw_A Uncharacterized protein 31.4 1.3E+02 0.0044 28.6 7.7 59 68-126 70-128 (138)
213 2jee_A YIIU; FTSZ, septum, coi 31.2 1.2E+02 0.0042 26.5 6.8 46 80-125 27-72 (81)
214 1tc3_C Protein (TC3 transposas 30.9 51 0.0017 23.7 3.9 41 22-71 4-44 (51)
215 3mq7_A Bone marrow stromal ant 29.2 1.2E+02 0.004 28.4 6.6 65 60-126 41-110 (121)
216 1nlw_A MAD protein, MAX dimeri 27.3 63 0.0022 27.9 4.4 30 97-126 50-79 (80)
217 3tl1_A WHIE ORF VI, polyketide 26.9 4.1E+02 0.014 25.1 13.5 111 216-347 6-117 (159)
218 3mq7_A Bone marrow stromal ant 26.8 2E+02 0.0069 26.8 7.7 38 89-126 52-89 (121)
219 3lph_A Protein REV; helix-loop 26.7 52 0.0018 28.1 3.6 37 29-83 18-54 (72)
220 3a5t_A Transcription factor MA 26.3 4.1 0.00014 37.6 -3.5 49 73-121 51-99 (107)
221 1uii_A Geminin; human, DNA rep 24.7 2.1E+02 0.0072 25.1 7.1 27 95-121 47-73 (83)
222 3m9b_A Proteasome-associated A 24.7 45 0.0015 35.0 3.4 38 91-128 58-95 (251)
223 1wlq_A Geminin; coiled-coil; 2 24.5 1.6E+02 0.0054 25.9 6.3 26 96-121 40-65 (83)
224 1t6f_A Geminin; coiled-coil, c 24.5 79 0.0027 23.6 3.7 26 100-125 6-31 (37)
225 1uii_A Geminin; human, DNA rep 23.4 2.1E+02 0.007 25.2 6.8 38 78-115 37-74 (83)
226 3hug_A RNA polymerase sigma fa 23.2 91 0.0031 26.6 4.7 46 23-77 37-82 (92)
227 2x7l_M HIV REV; nuclear export 22.8 35 0.0012 31.7 1.9 36 30-83 16-51 (115)
228 3oja_B Anopheles plasmodium-re 22.6 3.6E+02 0.012 30.5 10.9 30 97-126 547-576 (597)
229 4dzn_A Coiled-coil peptide CC- 21.9 1.6E+02 0.0054 20.9 4.6 28 97-124 5-32 (33)
230 3lay_A Zinc resistance-associa 20.7 2.6E+02 0.0088 27.6 7.9 6 59-64 67-72 (175)
231 2elh_A CG11849-PA, LD40883P; s 20.5 1E+02 0.0035 26.2 4.4 43 19-70 18-60 (87)
232 3m91_A Proteasome-associated A 20.1 2.8E+02 0.0097 22.1 6.4 36 85-120 14-49 (51)
No 1
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=99.80 E-value=3.1e-19 Score=184.07 Aligned_cols=198 Identities=19% Similarity=0.246 Sum_probs=160.6
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCCCceEecCCCCCCCCcccceec-cCCCcceeeeeeeEEeeChhhHHHHhcC-----cc
Q 003075 163 PAGLLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAV-SRNCSGVAARACGLVSLDPTKIAEILKD-----CP 236 (850)
Q Consensus 163 ~~~l~~~A~~am~Ell~la~~~~plWi~~~g~~~g~~~~~~~~~-~~~~~~eASR~~glV~m~~~~LVe~lmD-----~~ 236 (850)
++.+.++|+++|+|++++++.+ ..|..... +.| +.++-. ..+..+.+-|..|+|.+.+.+|+++||+ +.
T Consensus 21 ~~~y~~~a~~~~~~~l~~~~~~-~~W~~~~~-~~g---v~v~~~~~~~~~~~~~k~~~~v~~~~~~v~~~l~~~d~~~r~ 95 (231)
T 2r55_A 21 QSMAAQMSEAVAEKMLQYRRDT-AGWKICRE-GNG---VSVSWRPSVEFPGNLYRGEGIVYGTLEEVWDCVKPAVGGLRV 95 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-SSCEEEEC-CSS---EEEEEEECSSSSSEEEEEEEEESSCHHHHHHHHCC--CCSHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-CCCEEEEe-CCC---EEEEEEccCCCCCcEEEEEEEECCCHHHHHHHHHhhCcchhh
Confidence 6789999999999999999754 68987642 222 222211 1234568899999999999999999977 89
Q ss_pred chhhcCCcceeeeeccCCCccHHHHHHHhhc--ccccccccceeeEEeeccccCCCcEEEEEeecCCCCCCCCCCCCCcc
Q 003075 237 SWFRDCRCLDVLSVIPTGNGGTIELIYMQTY--APTTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSF 314 (850)
Q Consensus 237 ~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~--v~SPLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~f 314 (850)
+|-..|...++|+.+... .. ++| ++. .++++|++|||.++||+++.++|.|+|+.+|++. +..|+...+
T Consensus 96 ~Wd~~~~~~~vle~i~~~--~~--i~~-~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~Sv~~----~~~P~~~~~ 166 (231)
T 2r55_A 96 KWDENVTGFEIIQSITDT--LC--VSR-TSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNATHVEH----PLCPPKPGF 166 (231)
T ss_dssp HHCTTCSEEEEEEECSSS--EE--EEE-EECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEEECCC----TTSCCCTTC
T ss_pred hhccccceeEEEEEcCCC--EE--EEE-EEeccccCCccCCCeEEEEEEEEEcCCCEEEEEEEeccC----CCCCCCCCC
Confidence 999999999999988642 12 222 232 3456899999999999999999999999999984 345666789
Q ss_pred ccccccccceeeeecC--CCceEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHHH-HHHhh
Q 003075 315 VRAEMLASGFLIRPCE--GGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR-HIRQI 378 (850)
Q Consensus 315 ~r~~rlPSGclIq~~~--nG~skVtwVeH~e~d~~~v~~l~Rpl~~Sg~afgar~~~~aLr-~~e~l 378 (850)
+|++.++|||+|++++ +|.|+|||+.|+|..-+ +| +.++++.+..+...++..|| +|+..
T Consensus 167 VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~~~ 229 (231)
T 2r55_A 167 VRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGY-LP---QNVVDSFFPRSMTRFYANLQKAVKQF 229 (231)
T ss_dssp EEEEECSEEEEEEECC--CCCEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred EEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCCCC-cc---HHHHHHHHhHhHHHHHHHHHHHHHHh
Confidence 9999999999999998 78999999999999876 55 68888999999999999996 88764
No 2
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.59 E-value=1e-15 Score=128.38 Aligned_cols=60 Identities=32% Similarity=0.442 Sum_probs=55.9
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003075 17 DSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 17 ~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq 80 (850)
.+++|++||..|+..||..|..++||+..++.+||..+ ||+++||++||||||+|+|+.+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVML----NLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh----CcCHHHhhHHHHhhhhhhhhhc
Confidence 46889999999999999999999999999999999999 9999999999999999999853
No 3
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=2.5e-15 Score=131.90 Aligned_cols=64 Identities=27% Similarity=0.528 Sum_probs=59.3
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHHH
Q 003075 15 IMDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 82 (850)
Q Consensus 15 ~~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq~~ 82 (850)
...+++|++||.+|+..||..|..++||+..+|.+||.+| ||+++||++||||||+|+|+++..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKI----DLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHh----CCCHHHhhHHHHHHHHHHHHHhhh
Confidence 3457889999999999999999999999999999999999 999999999999999999986543
No 4
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.58 E-value=1.8e-15 Score=124.60 Aligned_cols=57 Identities=30% Similarity=0.486 Sum_probs=55.0
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003075 18 STKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (850)
Q Consensus 18 ~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 78 (850)
+++|+.||.+|+..||..|+.++||+..++.+||.++ ||+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSL----SLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHH----CcCHHHhhhhhhHhhhhhcc
Confidence 4778999999999999999999999999999999999 99999999999999999986
No 5
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.58 E-value=2e-15 Score=136.40 Aligned_cols=63 Identities=27% Similarity=0.410 Sum_probs=58.7
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHHH
Q 003075 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 82 (850)
Q Consensus 16 ~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq~~ 82 (850)
..+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|++...
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~~~~ 78 (93)
T 3a01_A 16 KRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGL----KMTDAQVKTWFQNRRTKWRRQTAE 78 (93)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTT----TCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHh----CCChhhcccccHhhhhhhhhhhHH
Confidence 457889999999999999999999999999999999999 999999999999999999986543
No 6
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.58 E-value=6.6e-16 Score=129.07 Aligned_cols=60 Identities=27% Similarity=0.344 Sum_probs=53.3
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003075 17 DSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 17 ~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq 80 (850)
.+++|+.||.+|+..||..|..++||+..++.+||..+ ||+++||++||||||+|+|++|
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSIL----NLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHh----CCCHHHhhHHhHHhhcchhhcC
Confidence 46789999999999999999999999999999999999 9999999999999999999853
No 7
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=2.5e-15 Score=128.60 Aligned_cols=61 Identities=26% Similarity=0.451 Sum_probs=57.7
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003075 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 16 ~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq 80 (850)
..+++|++||.+|+..||..|+.++||+..++.+||.++ ||+++||++||||||+|+|+.+
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKML----QLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHH----CCCHHHhhHhhHhhHhhcCCCC
Confidence 457889999999999999999999999999999999999 9999999999999999999854
No 8
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.58 E-value=3.1e-15 Score=130.38 Aligned_cols=63 Identities=29% Similarity=0.476 Sum_probs=58.4
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHHH
Q 003075 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 82 (850)
Q Consensus 16 ~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq~~ 82 (850)
..+++|++||..|+..||..|..++||+..+|.+||..+ ||+++||++||||||+|+|+.+..
T Consensus 8 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~kr~~~~ 70 (77)
T 1nk2_P 8 KKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLI----RLTPTQVKIWFQNHRYKTKRAQNE 70 (77)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHh----CCCHHHHHHHhHHhhcchhhhhcc
Confidence 446788999999999999999999999999999999999 999999999999999999985543
No 9
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.9e-15 Score=129.26 Aligned_cols=61 Identities=31% Similarity=0.568 Sum_probs=57.8
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003075 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 16 ~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq 80 (850)
..+++|++||.+|+..||..|+.++||+..++.+||.++ ||+++||++||||||+|+|++.
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKV----HLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH----CCCHHHeehccccccccccccC
Confidence 457889999999999999999999999999999999999 9999999999999999999854
No 10
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.57 E-value=1.5e-15 Score=126.42 Aligned_cols=58 Identities=33% Similarity=0.566 Sum_probs=53.1
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003075 17 DSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (850)
Q Consensus 17 ~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 78 (850)
.+++|+.||.+|+..||..|+.++||+..++.+||..+ ||+++||++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSEL----GLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH----CcCHHHHHHHhhhhcccccc
Confidence 46889999999999999999999999999999999999 99999999999999999986
No 11
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.57 E-value=1.7e-15 Score=129.03 Aligned_cols=60 Identities=28% Similarity=0.405 Sum_probs=57.4
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003075 17 DSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 17 ~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq 80 (850)
.+++|++||.+|+..||..|+.++||+..++.+||..+ ||+++||++||||||+|+|++.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL----SLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHH----CcCHhhhhHHhHHHHhHHhHhc
Confidence 57889999999999999999999999999999999999 9999999999999999999854
No 12
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=3.6e-15 Score=130.64 Aligned_cols=63 Identities=16% Similarity=0.339 Sum_probs=58.9
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHH
Q 003075 15 IMDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 81 (850)
Q Consensus 15 ~~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq~ 81 (850)
...+++|++||.+|+..||..|+.++||+..++.+||.++ ||+++||++||||||+|+|+++.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKT----GLTKRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh----CCCHHHhhHccHHHHHHHHHHHH
Confidence 3457889999999999999999999999999999999999 99999999999999999998553
No 13
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2.2e-15 Score=132.23 Aligned_cols=62 Identities=24% Similarity=0.327 Sum_probs=57.8
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003075 15 IMDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 15 ~~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq 80 (850)
...+++|+.||.+|+..||..|+.++||+..+|.+||..| ||+++||++||||||+|+|+.+
T Consensus 15 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 15 KKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESL----GLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh----CCCHHHeeeccHHHHHHhhccc
Confidence 3457888999999999999999999999999999999999 9999999999999999999843
No 14
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.57 E-value=1.9e-15 Score=129.17 Aligned_cols=62 Identities=24% Similarity=0.378 Sum_probs=58.1
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003075 15 IMDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 15 ~~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq 80 (850)
...+++|++||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|+++
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLL----NLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHS----CCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHh----CCCHHHhHHhhHhhhHHHhhcc
Confidence 3457889999999999999999999999999999999999 9999999999999999999854
No 15
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=1.9e-15 Score=129.28 Aligned_cols=61 Identities=30% Similarity=0.529 Sum_probs=57.6
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003075 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 16 ~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq 80 (850)
..+++|++||.+|+..||..|+.++||+..++.+||.++ ||+++||++||||||+|+|+.+
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 6 SGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAAT----SLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----CCCHHHhhHhhHhHHHHhcccC
Confidence 457889999999999999999999999999999999999 9999999999999999999844
No 16
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.56 E-value=3.2e-15 Score=131.16 Aligned_cols=62 Identities=23% Similarity=0.534 Sum_probs=58.3
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHH
Q 003075 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 81 (850)
Q Consensus 16 ~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq~ 81 (850)
..+++|++||.+|+..||..|+.++||+..+|.+||.++ ||+++||++||||||+|+|+++.
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 6 SGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKI----NLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH----CcCHHHhhhhhHHHhHHhhHHHH
Confidence 457889999999999999999999999999999999999 99999999999999999998543
No 17
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.56 E-value=2.7e-15 Score=124.56 Aligned_cols=58 Identities=33% Similarity=0.506 Sum_probs=55.1
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHH
Q 003075 18 STKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 79 (850)
Q Consensus 18 ~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krk 79 (850)
+++|+.||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQL----NLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH----CcCHHHHHHhhHHHHhHhhcc
Confidence 4778999999999999999999999999999999999 999999999999999999873
No 18
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.56 E-value=2e-15 Score=132.04 Aligned_cols=61 Identities=30% Similarity=0.488 Sum_probs=57.6
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003075 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 16 ~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq 80 (850)
..+++|++||.+|+..||..|..++||+..++.+||.+| ||+++||++||||||+|+|+++
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 16 RDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEV----GLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----CcCHHHhHHHhHHHHHhHhhhc
Confidence 447788999999999999999999999999999999999 9999999999999999999854
No 19
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.56 E-value=3.3e-15 Score=127.24 Aligned_cols=60 Identities=30% Similarity=0.517 Sum_probs=57.4
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003075 17 DSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 17 ~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq 80 (850)
.+++|++||.+|+..||..|..++||+..++.+||..+ ||+++||++||||||+|+|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMI----HLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHh----CCCHHHhHHHhHHHhhhhhhhh
Confidence 56889999999999999999999999999999999999 9999999999999999999854
No 20
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.56 E-value=2.1e-15 Score=128.36 Aligned_cols=61 Identities=25% Similarity=0.530 Sum_probs=57.9
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHH
Q 003075 17 DSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 81 (850)
Q Consensus 17 ~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq~ 81 (850)
.+++|++||.+|+..||..|..++||+..++.+||..+ ||+++||++||||||+|+|+++.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWT----NLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHT----TSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHhHHHHHHhh
Confidence 57889999999999999999999999999999999999 99999999999999999998654
No 21
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.55 E-value=2.6e-15 Score=128.32 Aligned_cols=61 Identities=23% Similarity=0.386 Sum_probs=57.7
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003075 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 16 ~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq 80 (850)
..+++|++||.+|+..||..|+.++||+..++.+||..+ ||+++||++||||||+|+|++.
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 6 SGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKS----GLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHH----CCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHh----CCCHHHHHHHhhhhhHHHhhhc
Confidence 457889999999999999999999999999999999999 9999999999999999999854
No 22
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.55 E-value=3.3e-15 Score=133.44 Aligned_cols=61 Identities=28% Similarity=0.410 Sum_probs=55.1
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003075 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 16 ~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq 80 (850)
..+++|++||.+|+..||..|+.++||+..+|.+||..+ ||+++||++||||||+|+|+++
T Consensus 27 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 27 ETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL----SLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHh----CcCHHHhhHHhHHHHHHhHhhc
Confidence 457889999999999999999999999999999999999 9999999999999999999843
No 23
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.55 E-value=5.4e-15 Score=125.89 Aligned_cols=61 Identities=25% Similarity=0.428 Sum_probs=57.5
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHH
Q 003075 17 DSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 81 (850)
Q Consensus 17 ~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq~ 81 (850)
.+++|+.||.+|+..||..|..++||+..++.+||..+ ||+++||++||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKL----ALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh----CcCHHHhhHhhHHHHHHHHHHhc
Confidence 46789999999999999999999999999999999999 99999999999999999998543
No 24
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.55 E-value=6.5e-15 Score=128.35 Aligned_cols=62 Identities=31% Similarity=0.420 Sum_probs=57.8
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHH
Q 003075 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 81 (850)
Q Consensus 16 ~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq~ 81 (850)
..+++|++||..|+..||..|..++||+..+|.+||..+ ||+++||++||||||+|+|+...
T Consensus 12 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 12 STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLL----NLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp TTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHhhh
Confidence 346788999999999999999999999999999999999 99999999999999999998543
No 25
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=3.1e-15 Score=128.04 Aligned_cols=62 Identities=24% Similarity=0.393 Sum_probs=57.8
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003075 15 IMDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 15 ~~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq 80 (850)
...+++|++||.+|+..||..|+.++||+..++.+||.++ ||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASL----GLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHS----SCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHh----CCCHHHHHHHHHHHhhhhcccC
Confidence 3457889999999999999999999999999999999999 9999999999999999998743
No 26
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.55 E-value=2.7e-15 Score=124.54 Aligned_cols=58 Identities=29% Similarity=0.569 Sum_probs=50.6
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003075 19 TKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 19 rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq 80 (850)
++|++||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|+++
T Consensus 1 g~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 1 GSHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKI----GLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ----CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHC---
T ss_pred CCCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHH----CcCHHHHHHHhhhhhhhhHhhc
Confidence 357899999999999999999999999999999999 9999999999999999999854
No 27
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.54 E-value=6.7e-15 Score=127.00 Aligned_cols=60 Identities=20% Similarity=0.305 Sum_probs=56.4
Q ss_pred CCCCcccCCHHHHHHHHHhHh-cCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003075 17 DSTKYVRYTPEQVEALERVYS-ECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 17 ~~rkR~r~T~~Ql~~LE~~F~-~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq 80 (850)
.+++|++||.+|+..||..|+ .++||+..+|.+||.++ ||+++||++||||||+|+|+++
T Consensus 2 ~~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~----~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 2 SAQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEA----GLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CCSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHhc
Confidence 357789999999999999999 59999999999999999 9999999999999999999855
No 28
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.54 E-value=6.6e-15 Score=126.66 Aligned_cols=59 Identities=22% Similarity=0.345 Sum_probs=55.9
Q ss_pred CCCcccCCHHHHHHHHHhHhc-CCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003075 18 STKYVRYTPEQVEALERVYSE-CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 18 ~rkR~r~T~~Ql~~LE~~F~~-~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq 80 (850)
.++|++||.+|+..||..|+. ++||+..+|.+||.++ ||+++||++||||||+|+|+++
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEA----GLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH----CcCHHHhhHHhHHHHHHHhhhc
Confidence 467889999999999999996 9999999999999999 9999999999999999999855
No 29
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.54 E-value=3.6e-15 Score=131.36 Aligned_cols=62 Identities=27% Similarity=0.393 Sum_probs=54.3
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003075 15 IMDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 15 ~~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq 80 (850)
+..+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+.+
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHAL----SLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----CCCHHHHHHHhHHhhhhhhhhc
Confidence 3457889999999999999999999999999999999999 9999999999999999999853
No 30
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.54 E-value=5.2e-15 Score=121.37 Aligned_cols=57 Identities=33% Similarity=0.503 Sum_probs=54.3
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHH
Q 003075 17 DSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 77 (850)
Q Consensus 17 ~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~K 77 (850)
.+++|++||.+|+..||..|+.++||+..++.+||..+ ||+++||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVL----KLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh----CcCHHHHHHhhHHhhccCC
Confidence 35788999999999999999999999999999999999 9999999999999999875
No 31
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.54 E-value=2.6e-15 Score=127.03 Aligned_cols=60 Identities=32% Similarity=0.731 Sum_probs=56.8
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003075 17 DSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 17 ~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq 80 (850)
.+++|+.||.+|+..||..|+.++||+..++.+||..+ ||+++||++||||||+|+|+++
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMT----GLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHH----CcCHHHHHHHhHHHHHHHhHHh
Confidence 46889999999999999999999999999999999999 9999999999999999998743
No 32
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.54 E-value=8e-15 Score=128.89 Aligned_cols=62 Identities=27% Similarity=0.578 Sum_probs=58.1
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHH
Q 003075 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 81 (850)
Q Consensus 16 ~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq~ 81 (850)
..+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+++.
T Consensus 17 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 17 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRT----NLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHhhhhhhhcc
Confidence 347788999999999999999999999999999999999 99999999999999999998553
No 33
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.53 E-value=3.6e-15 Score=131.82 Aligned_cols=61 Identities=25% Similarity=0.343 Sum_probs=57.3
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003075 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 16 ~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq 80 (850)
..+++|+.||..|+..||..|..++||+..+|.+||..+ ||+++||++||||||+|+|+++
T Consensus 21 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 21 KKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNIL----NLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHHHHh
Confidence 347788999999999999999999999999999999999 9999999999999999999854
No 34
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.53 E-value=6.1e-15 Score=120.95 Aligned_cols=54 Identities=30% Similarity=0.481 Sum_probs=50.8
Q ss_pred ccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHH
Q 003075 22 VRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 79 (850)
Q Consensus 22 ~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krk 79 (850)
+.||.+|+..||..|+.++||+..+|.+||.++ ||+++||++||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKAL----RMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHh----CcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999 999999999999999999984
No 35
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.53 E-value=7.8e-15 Score=127.94 Aligned_cols=58 Identities=22% Similarity=0.319 Sum_probs=54.8
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003075 19 TKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 19 rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq 80 (850)
.+|.+||.+|+.+||..|..++||+..+|.+||..+ ||+++||++||||||+|+|+.+
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~t----gLte~qIkvWFqNrR~k~Kk~~ 62 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQIT----GLPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH----CcCHHHhhHHhHhhHHHHHHHH
Confidence 566789999999999999999999999999999999 9999999999999999999843
No 36
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=4.7e-15 Score=130.09 Aligned_cols=61 Identities=11% Similarity=0.263 Sum_probs=57.6
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcC----CCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003075 16 MDSTKYVRYTPEQVEALERVYSEC----PKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 16 ~~~rkR~r~T~~Ql~~LE~~F~~~----~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq 80 (850)
..+++|+.||.+|+..||..|+.+ +||+..+|.+||.++ ||+++||++||||||+|+|+..
T Consensus 7 ~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~l----gL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 7 GALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATEL----NVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHh----CCCHHHhhHhHHHHHHHHhhcc
Confidence 457889999999999999999999 999999999999999 9999999999999999999854
No 37
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.53 E-value=6.2e-15 Score=124.99 Aligned_cols=60 Identities=30% Similarity=0.489 Sum_probs=56.9
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHH
Q 003075 18 STKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 81 (850)
Q Consensus 18 ~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq~ 81 (850)
+++|++||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|++..
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKL----NLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHCSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----CcCHHHhhHhhHhHHHHHhHhch
Confidence 5788999999999999999999999999999999999 99999999999999999998543
No 38
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.53 E-value=4.3e-15 Score=130.80 Aligned_cols=59 Identities=17% Similarity=0.320 Sum_probs=55.7
Q ss_pred CCCCCcccCCHHHHHHHHHhHhc----CCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003075 16 MDSTKYVRYTPEQVEALERVYSE----CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (850)
Q Consensus 16 ~~~rkR~r~T~~Ql~~LE~~F~~----~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 78 (850)
..+|+|+.||.+|+..||..|+. ++||+..+|.+||.+| ||+++||+|||||||+|.|+
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~l----gL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 16 IRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQET----GVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHS----CCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHh----CCCcccccCCccccCcCCCC
Confidence 45788999999999999999999 9999999999999999 99999999999999998764
No 39
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.53 E-value=6.5e-15 Score=127.19 Aligned_cols=59 Identities=34% Similarity=0.567 Sum_probs=56.6
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHH
Q 003075 17 DSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 79 (850)
Q Consensus 17 ~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krk 79 (850)
.+++|++||.+|+..||..|..++||+..+|.+||..+ ||+++||++||||||+|+|+.
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~ 65 (73)
T 2l7z_A 7 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATT----NLSERQVTIWFQNRRVKEKKV 65 (73)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHH----TSCSHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHH----CCCHHHHHHHHHHHhHHHHHH
Confidence 47889999999999999999999999999999999999 999999999999999999984
No 40
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=7.2e-15 Score=127.62 Aligned_cols=59 Identities=31% Similarity=0.556 Sum_probs=56.1
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003075 18 STKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 18 ~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq 80 (850)
.++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+++
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSET----KMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHh----CCCHHHhhHhhHHHHHHHHHhh
Confidence 5678899999999999999999999999999999999 9999999999999999999854
No 41
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.52 E-value=6.1e-15 Score=122.60 Aligned_cols=58 Identities=28% Similarity=0.550 Sum_probs=48.4
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHH
Q 003075 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 77 (850)
Q Consensus 16 ~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~K 77 (850)
..+++|++||.+|+..||..|..++||+..++.+||..+ ||+++||++||||||+|+|
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKC----GITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp --------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhccC
Confidence 346788999999999999999999999999999999999 9999999999999999875
No 42
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.51 E-value=1e-14 Score=131.01 Aligned_cols=61 Identities=16% Similarity=0.359 Sum_probs=56.1
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHHH
Q 003075 18 STKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 82 (850)
Q Consensus 18 ~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq~~ 82 (850)
.+++.+||.+|+.+||..|..++||+..+|.+||..| ||+++||+|||||||+|+|+++..
T Consensus 12 p~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----gLte~qVkvWFqNRR~k~rk~~~~ 72 (89)
T 2ecb_A 12 PQKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQT----KLTRREIDAWFTEKKKSKALKEEK 72 (89)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHSCCSC
T ss_pred chhhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh----CcChHHCeecccccchHHHHHHHH
Confidence 4556699999999999999999999999999999999 999999999999999999985543
No 43
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.51 E-value=9.4e-15 Score=126.14 Aligned_cols=62 Identities=29% Similarity=0.562 Sum_probs=58.0
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHH
Q 003075 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 81 (850)
Q Consensus 16 ~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq~ 81 (850)
..+++|++||.+|+..||..|..++||+..++.+||..+ ||+++||++||||||+|+|+++.
T Consensus 8 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 8 KKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRT----DLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp CCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh----CCCHHHHHHHhHHHHHHHHHHHh
Confidence 457789999999999999999999999999999999999 99999999999999999998543
No 44
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.50 E-value=1.2e-14 Score=125.45 Aligned_cols=61 Identities=21% Similarity=0.337 Sum_probs=57.3
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHH
Q 003075 17 DSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 81 (850)
Q Consensus 17 ~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq~ 81 (850)
.++.|+.||.+|+..||..|+.++||+..++.+||.++ ||+++||++||||||+|+|+.+.
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKIT----GLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh----CcCHHHeeeCChhHhHHHHhhCc
Confidence 36788999999999999999999999999999999999 99999999999999999998553
No 45
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.50 E-value=1.9e-14 Score=130.79 Aligned_cols=62 Identities=29% Similarity=0.477 Sum_probs=55.8
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHH
Q 003075 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 81 (850)
Q Consensus 16 ~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq~ 81 (850)
..+++|+.||.+|+..||..|..++||+..+|.+||..| ||+++||++||||||+|+|+++.
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATL----ELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHh----CCCHHHhHHHHHHHhHHHhHHhc
Confidence 347789999999999999999999999999999999999 99999999999999999998653
No 46
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.50 E-value=8.4e-15 Score=129.06 Aligned_cols=58 Identities=19% Similarity=0.369 Sum_probs=54.2
Q ss_pred CCCCCcccCCHHHHHHHHHhHhc-----CCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003075 16 MDSTKYVRYTPEQVEALERVYSE-----CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (850)
Q Consensus 16 ~~~rkR~r~T~~Ql~~LE~~F~~-----~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 78 (850)
..+|+|+.||.+|++.|| .|.+ ++||+..+|.+||.+| ||+++||||||||||+|+|+
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~l----gL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 16 TTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAET----GVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHS----CCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHh----CcCcCcccccccccccCCCC
Confidence 457888999999999999 7999 9999999999999999 99999999999999998764
No 47
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=9.8e-15 Score=126.94 Aligned_cols=60 Identities=20% Similarity=0.377 Sum_probs=56.2
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003075 17 DSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 17 ~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq 80 (850)
.++.|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+++
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVT----GLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHH----CCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh----CCChHHhhHHhHHHhHHHHHhc
Confidence 35568999999999999999999999999999999999 9999999999999999999844
No 48
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.48 E-value=3e-14 Score=129.04 Aligned_cols=62 Identities=23% Similarity=0.478 Sum_probs=58.4
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCC---------------CChhhhhhhhhhhhHHHHHHH
Q 003075 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSN---------------IEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 16 ~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~g---------------L~~rQVkvWFQNRRak~Krkq 80 (850)
..+|+|+.||+.|+..||..|+.++||+..+|.+||.+| | |+++||++||||||+|+|+++
T Consensus 6 ~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l----~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~ 81 (95)
T 2cuf_A 6 SGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANAC----NAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRA 81 (95)
T ss_dssp CCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----HHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----CchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 457889999999999999999999999999999999999 9 999999999999999999865
Q ss_pred H
Q 003075 81 E 81 (850)
Q Consensus 81 ~ 81 (850)
.
T Consensus 82 ~ 82 (95)
T 2cuf_A 82 N 82 (95)
T ss_dssp H
T ss_pred h
Confidence 4
No 49
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.48 E-value=2.8e-14 Score=118.31 Aligned_cols=55 Identities=31% Similarity=0.495 Sum_probs=53.0
Q ss_pred CcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003075 20 KYVRYTPEQVEALERVYSE---CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (850)
Q Consensus 20 kR~r~T~~Ql~~LE~~F~~---~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 78 (850)
++++||.+|+..||..|.. ++||+..++.+||.++ ||+++||++||||||+|+|+
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~----gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNT----SLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHccccc
Confidence 4689999999999999999 9999999999999999 99999999999999999986
No 50
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.48 E-value=3e-14 Score=122.79 Aligned_cols=60 Identities=27% Similarity=0.510 Sum_probs=56.5
Q ss_pred CCCcccCCHHHHHHHHHhH---hcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHH
Q 003075 18 STKYVRYTPEQVEALERVY---SECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 81 (850)
Q Consensus 18 ~rkR~r~T~~Ql~~LE~~F---~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq~ 81 (850)
+++|++||.+|+..||..| ..++||+..++.+||..+ ||+++||++||||||+|+|++..
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk~~~ 64 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKKNIG 64 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhhcccccc
Confidence 5788999999999999999 899999999999999999 99999999999999999998443
No 51
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.47 E-value=3.1e-14 Score=129.23 Aligned_cols=60 Identities=25% Similarity=0.418 Sum_probs=56.0
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003075 17 DSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 17 ~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq 80 (850)
.+++|++||.+|+..||..|+.++||+..+|.+||.++ ||+++||++||||||+|+|+.+
T Consensus 25 ~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 25 STGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKES----GLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp --CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh----CCCHHHeeecchhhhhHhhhhc
Confidence 36788999999999999999999999999999999999 9999999999999999999854
No 52
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.47 E-value=5.8e-14 Score=120.98 Aligned_cols=61 Identities=20% Similarity=0.262 Sum_probs=56.9
Q ss_pred CCCCCcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003075 16 MDSTKYVRYTPEQVEALERVYSE---CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 16 ~~~rkR~r~T~~Ql~~LE~~F~~---~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq 80 (850)
..+++|++||.+|+..||..|.+ ++||+..+|.+||.++ ||+++||++||||||+|+|+..
T Consensus 6 ~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 6 SGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQT----NLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH----CcCHHHHHHHhHHHHhhccccc
Confidence 45788899999999999999987 9999999999999999 9999999999999999999853
No 53
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.47 E-value=5.8e-14 Score=124.85 Aligned_cols=60 Identities=27% Similarity=0.510 Sum_probs=56.0
Q ss_pred CCCcccCCHHHHHHHHHhH---hcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHH
Q 003075 18 STKYVRYTPEQVEALERVY---SECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 81 (850)
Q Consensus 18 ~rkR~r~T~~Ql~~LE~~F---~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq~ 81 (850)
+|+|++||.+|+..||.+| ..++||+..+|.+||.++ ||+++||++||||||+|+|++..
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~r~kk~~~ 64 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKKNIG 64 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHCGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhhhccc
Confidence 5788999999999999999 899999999999999999 99999999999999999998543
No 54
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.46 E-value=1.7e-14 Score=121.15 Aligned_cols=58 Identities=26% Similarity=0.488 Sum_probs=55.2
Q ss_pred CCCCcccCCHHHHHHHHHhH---hcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003075 17 DSTKYVRYTPEQVEALERVY---SECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (850)
Q Consensus 17 ~~rkR~r~T~~Ql~~LE~~F---~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 78 (850)
.+++|++||.+|+..||..| ..++||+..++.+||.++ ||+++||++||||||+|+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----TSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhcc
Confidence 46788999999999999999 899999999999999999 99999999999999999876
No 55
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.45 E-value=2.4e-14 Score=123.59 Aligned_cols=57 Identities=25% Similarity=0.422 Sum_probs=54.1
Q ss_pred CCCcccCCHHHHHHHHHhH-hcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003075 18 STKYVRYTPEQVEALERVY-SECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (850)
Q Consensus 18 ~rkR~r~T~~Ql~~LE~~F-~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 78 (850)
.+++.+++.+|+..||..| +.++||+..+|.+||.++ ||+++||++||||||+|+|+
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l----~l~e~qVqvWFqNRR~k~r~ 66 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQL----DWSVRKIQCWFRHRRNQDKP 66 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHh----CCChhhcchhhhhcccCCCC
Confidence 4667789999999999999 999999999999999999 99999999999999999986
No 56
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=6.7e-14 Score=125.51 Aligned_cols=59 Identities=24% Similarity=0.400 Sum_probs=54.9
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003075 18 STKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 18 ~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq 80 (850)
..++.++|.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+++
T Consensus 14 p~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~----~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 14 PQKFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVET----KLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHh----CCCHHhccHhhHhHHHHHHHHh
Confidence 3566679999999999999999999999999999999 9999999999999999998744
No 57
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.42 E-value=5.4e-14 Score=120.60 Aligned_cols=56 Identities=32% Similarity=0.518 Sum_probs=52.6
Q ss_pred ccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHH
Q 003075 22 VRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 81 (850)
Q Consensus 22 ~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq~ 81 (850)
.-+|..|+..||..|+.++||+..+|.+||.++ ||+++||++||||||+|+|+++.
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l----~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNL----KLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHSCCSSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----CCChhheeecchhhhhhhhhhhh
Confidence 368999999999999999999999999999999 99999999999999999998543
No 58
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.42 E-value=1.2e-13 Score=116.95 Aligned_cols=53 Identities=25% Similarity=0.407 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003075 24 YTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 24 ~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq 80 (850)
-|.+|+..||..|..++||+..+|.+||..+ ||+++||++||||||+|+|+.+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~t----gLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVT----GLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----CcCHHHhhHhcccchhhhhccC
Confidence 4789999999999999999999999999999 9999999999999999999743
No 59
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.42 E-value=1.4e-13 Score=122.70 Aligned_cols=57 Identities=30% Similarity=0.472 Sum_probs=54.5
Q ss_pred CCCCcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHH
Q 003075 17 DSTKYVRYTPEQVEALERVYSE---CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 77 (850)
Q Consensus 17 ~~rkR~r~T~~Ql~~LE~~F~~---~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~K 77 (850)
.+++|++||.+|+..||..|.. ++||+..+|.+||.++ ||+++||++||||||+|+|
T Consensus 27 ~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~----gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 27 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNT----SLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhhcc
Confidence 4677899999999999999999 9999999999999999 9999999999999999987
No 60
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.41 E-value=1.2e-13 Score=122.15 Aligned_cols=59 Identities=27% Similarity=0.430 Sum_probs=54.3
Q ss_pred CCCcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003075 18 STKYVRYTPEQVEALERVYSE---CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 18 ~rkR~r~T~~Ql~~LE~~F~~---~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq 80 (850)
++++++||.+|+..||..|.. ++||+..+|.+||..+ ||+++||++||||||+|+|+..
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~----gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNT----SLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHH----CCCHHHcccccHHHHccccccc
Confidence 456778999999999999999 9999999999999999 9999999999999999999854
No 61
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.41 E-value=2.2e-13 Score=120.63 Aligned_cols=62 Identities=24% Similarity=0.238 Sum_probs=56.7
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003075 15 IMDSTKYVRYTPEQVEALERVYSE---CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 15 ~~~~rkR~r~T~~Ql~~LE~~F~~---~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq 80 (850)
...+++|++||.+|+..||.+|.+ ++||+..+|.+||.++ ||+++||++||||||+|+|+..
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~----gLs~~qV~~WFqNrR~r~k~~~ 69 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKT----NLSLLQISNWFINARRRILPDM 69 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH----CcCHHHhhHHhhhhHhhhcHHH
Confidence 345788899999999999999988 5999999999999999 9999999999999999998743
No 62
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.41 E-value=7.3e-14 Score=127.82 Aligned_cols=63 Identities=24% Similarity=0.429 Sum_probs=53.9
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHh------------------CCccCC---CChhhhhhhhhhhhH
Q 003075 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRE------------------CPILSN---IEPKQIKVWFQNRRC 74 (850)
Q Consensus 16 ~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~------------------L~~~~g---L~~rQVkvWFQNRRa 74 (850)
+.+|+|+.||+.|+..||..|..++||+..+|.+||.. | | |++.||++||||||+
T Consensus 8 k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~l----g~~~lse~qV~vWFqNRR~ 83 (99)
T 1lfb_A 8 KGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGL----GSNLVTEVRVYNWFANRRK 83 (99)
T ss_dssp -----CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTT----GGGCCCHHHHHHHHHHHHH
T ss_pred CCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcccccccccccccccccc----CccccCcceeeeccHHHHH
Confidence 45788999999999999999999999999999999999 7 8 999999999999999
Q ss_pred HHHHHHHH
Q 003075 75 REKQRKEA 82 (850)
Q Consensus 75 k~Krkq~~ 82 (850)
++|+++..
T Consensus 84 k~k~k~~~ 91 (99)
T 1lfb_A 84 EEAFRHKL 91 (99)
T ss_dssp TTSCCC--
T ss_pred HHHHhchh
Confidence 99876643
No 63
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.40 E-value=8.3e-14 Score=135.71 Aligned_cols=60 Identities=35% Similarity=0.529 Sum_probs=55.2
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHH
Q 003075 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 79 (850)
Q Consensus 16 ~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krk 79 (850)
..+|+|++||..|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|++
T Consensus 86 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 86 RKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEEL----NLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHh----CCChhhchhhhHhhhhhhhcc
Confidence 346778999999999999999999999999999999999 999999999999999999974
No 64
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.40 E-value=2.7e-13 Score=115.06 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=53.9
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhc-CCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHH
Q 003075 15 IMDSTKYVRYTPEQVEALERVYSE-CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCR 75 (850)
Q Consensus 15 ~~~~rkR~r~T~~Ql~~LE~~F~~-~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak 75 (850)
+..+|.|+.||.+|+..|+..|+. ++||+...|++||.++ ||++++|++||||||--
T Consensus 5 ~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~t----GL~~~~IqVWFQNrR~~ 62 (71)
T 1wi3_A 5 SSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQL----DLPKHTIIKFFQNQRYH 62 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHS----CCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----CCCHHHHHHhhccceee
Confidence 456889999999999999999999 9999999999999999 99999999999999954
No 65
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=1.4e-13 Score=116.35 Aligned_cols=55 Identities=15% Similarity=0.235 Sum_probs=51.1
Q ss_pred CcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003075 20 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (850)
Q Consensus 20 kR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 78 (850)
.+..++.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|.|+
T Consensus 6 ~~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 6 SGQPPLKNLLSLLKAYYALNAQPSAEELSKIADSV----NLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp SCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTCSC
T ss_pred CCCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHh----CcChhhcCcchhcccCCCCC
Confidence 34567899999999999999999999999999999 99999999999999998765
No 66
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.39 E-value=1.2e-13 Score=136.33 Aligned_cols=60 Identities=32% Similarity=0.448 Sum_probs=54.5
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHH
Q 003075 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 79 (850)
Q Consensus 16 ~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krk 79 (850)
..+|+|+.||..|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+||+
T Consensus 100 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 100 RRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQL----NMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHH----CCChHHhhHhhHHhhhhhhcc
Confidence 347889999999999999999999999999999999999 999999999999999999974
No 67
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=4.7e-13 Score=122.73 Aligned_cols=67 Identities=24% Similarity=0.451 Sum_probs=58.7
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCC-------------ccC----CCChhhhhhhhhhhhHHHHH
Q 003075 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECP-------------ILS----NIEPKQIKVWFQNRRCREKQ 78 (850)
Q Consensus 16 ~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~-------------~~~----gL~~rQVkvWFQNRRak~Kr 78 (850)
..+|+|+.||+.|+.+||+.|..++||+..+|.+||.+|- .++ ++++.+|++||||||+|+|+
T Consensus 5 ~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~kr 84 (102)
T 2da6_A 5 SSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEAF 84 (102)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHHH
Confidence 4578899999999999999999999999999999999981 122 58899999999999999998
Q ss_pred HHHH
Q 003075 79 RKEA 82 (850)
Q Consensus 79 kq~~ 82 (850)
++..
T Consensus 85 ~~~~ 88 (102)
T 2da6_A 85 RQKL 88 (102)
T ss_dssp HHHH
T ss_pred hhHh
Confidence 7654
No 68
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.37 E-value=3.2e-13 Score=132.08 Aligned_cols=59 Identities=27% Similarity=0.567 Sum_probs=56.0
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003075 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (850)
Q Consensus 16 ~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 78 (850)
..+|+|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+
T Consensus 92 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 92 KKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKEL----NYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----CCCHHHhHHHHHHHHhccCC
Confidence 446788999999999999999999999999999999999 99999999999999999986
No 69
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.37 E-value=1.8e-13 Score=135.90 Aligned_cols=61 Identities=31% Similarity=0.486 Sum_probs=51.6
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003075 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 16 ~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq 80 (850)
..+|+|++||..|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+++
T Consensus 98 ~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~~ 158 (164)
T 2xsd_C 98 RKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSL----QLEKEVVRVWFCNRRQKEKRMT 158 (164)
T ss_dssp --------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTBSC
T ss_pred cCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----CCChhhhhhhhHHhhHHHhhcc
Confidence 346788999999999999999999999999999999999 9999999999999999999854
No 70
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.37 E-value=1.7e-13 Score=115.78 Aligned_cols=49 Identities=27% Similarity=0.523 Sum_probs=46.2
Q ss_pred HHHHHHHHHhH-hcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003075 26 PEQVEALERVY-SECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (850)
Q Consensus 26 ~~Ql~~LE~~F-~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 78 (850)
+.|+.+||+.| ..++||+..+|.+||++| ||+++||++||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l----~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQL----DWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHH----CSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHh----CCCHHHHHHHHHHHHhccCC
Confidence 56899999999 678999999999999999 99999999999999999885
No 71
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=99.36 E-value=1.2e-12 Score=136.47 Aligned_cols=176 Identities=20% Similarity=0.233 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHhcCCCCceEecCCCCCCCCcccceeccCCCcceeeeeeeEEeeChhhHH-HHhcCccchhhcCCccee
Q 003075 169 VAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLDPTKIA-EILKDCPSWFRDCRCLDV 247 (850)
Q Consensus 169 ~A~~am~Ell~la~~~~plWi~~~g~~~g~~~~~~~~~~~~~~~eASR~~glV~m~~~~LV-e~lmD~~~W~~~f~~~~~ 247 (850)
++++++.|+++.+.....-|-.... +.|-.++.. ..+.+...-.=|..++|...+.+++ ++|.|+.+|-..|...++
T Consensus 33 ~l~~~~~~ll~~~~~~~~gW~~~~~-~~gi~V~~k-~~~~~~~~~~~K~~~~v~~~~~~v~~~ll~dr~~Wd~~~~~~~v 110 (237)
T 2pso_A 33 YLNHLIQGLQKEAKEKFKGWVTCSS-TDNTDLAFK-KVGDGNPLKLWKASVEVEAPPSVVLNRVLRERHLWDEDFVQWKV 110 (237)
T ss_dssp CCCCHHHHHHHHHHHHCCSCEEECC-SSSCEEEEE-CCCSSCCCCEEEEEEEESSCHHHHHHHHHHCGGGTCTTBCCCEE
T ss_pred HHHHHHHHHHHHhhcCCCCCEEEec-CCCeEEEEE-EcCCCCCcEEEEEEEEEcCChHHHHHHHHhhhhhHHhhhceEEE
Confidence 4567888888777654556977643 222111111 1123333456688899988787764 789999999999999999
Q ss_pred eeeccCCCccHHHHHHHhhcccccccccceeeEEeeccc-cCCCcEEEEEeecCCCCCCCCCCCCCccccccccccceee
Q 003075 248 LSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTS-LEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFLI 326 (850)
Q Consensus 248 l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq-~~~G~waVvDvSld~~~~~~~~~~~~~f~r~~rlPSGclI 326 (850)
|+.+... -.++|..+..|.| +++|||.++||.++ +++|.++||-.|++. +..|+. .|+|+..+++|++|
T Consensus 111 le~id~~----~~I~y~~~~~p~p-~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h----~~~P~~-g~VR~~~~~~g~~i 180 (237)
T 2pso_A 111 VETLDRQ----TEIYQYVLNSMAP-HPSRDFVVLRTWKTDLPKGMCTLVSLSVEH----EEAQLL-GGVRAVVMDSQYLI 180 (237)
T ss_dssp EEEEETT----EEEEEEEECCSSS-CCCEEEEEEEEEESCCGGGCEEEEEEECCC----TTCCCC-SSEECCEEEEEEEE
T ss_pred EEEcCCC----cEEEEEEecCCCC-cCCeEEEEEEEEEEECCCCEEEEEEEcccC----CCCCCC-CcEEEEEeccEEEE
Confidence 9988743 1345555665555 79999999999985 789999999999984 334555 89999999999999
Q ss_pred eecCCCceEEEEEEeeeccCCCccccchhhh
Q 003075 327 RPCEGGGSIIHIVDHVDLDAWSVPEVLRPLY 357 (850)
Q Consensus 327 q~~~nG~skVtwVeH~e~d~~~v~~l~Rpl~ 357 (850)
+|+++|.|+|||+-|+|.. ..+|.-+...+
T Consensus 181 ~P~~~~~t~vt~~~~~Dp~-G~iP~~ln~~~ 210 (237)
T 2pso_A 181 EPCGSGKSRLTHICRIDLK-GHSPEWYSKGF 210 (237)
T ss_dssp EECSTTCEEEEEEEEECCS-SSCTTTTTTHH
T ss_pred EECCCCCEEEEEEEEeCCC-CCchHHHHHHH
Confidence 9999999999999999988 56786654444
No 72
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.35 E-value=5e-13 Score=131.41 Aligned_cols=59 Identities=25% Similarity=0.443 Sum_probs=56.4
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003075 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (850)
Q Consensus 16 ~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 78 (850)
..+|+|++||..|+..||..|..++||+..+|.+||..+ ||+++||++||||||+|+|+
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~Kr 153 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQL----GLEKDVVRVWFSNRRQKGKR 153 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHc----CCChhheeeccccccccccC
Confidence 457788999999999999999999999999999999999 99999999999999999997
No 73
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=99.35 E-value=4.6e-12 Score=130.41 Aligned_cols=197 Identities=15% Similarity=0.153 Sum_probs=144.7
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCceEecCCCCCCCCcccceeccCCCcceeeeeeeEEeeChhhHH-HHhcC---ccchh
Q 003075 164 AGLLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLDPTKIA-EILKD---CPSWF 239 (850)
Q Consensus 164 ~~l~~~A~~am~Ell~la~~~~plWi~~~g~~~g~~~~~~~~~~~~~~~eASR~~glV~m~~~~LV-e~lmD---~~~W~ 239 (850)
...+.++++|+++++.+... .--|-.....+.|-.++... . .+ .+-.-|..++|...+..+. ++|+| +.+|-
T Consensus 21 ~~y~~~~~~a~~~~~~~l~~-~~~W~~~~~~~~g~~vy~~~-~-~~-~g~~~k~~~~v~~~~~~v~~~~~~d~~~r~~Wd 96 (229)
T 1em2_A 21 REYIRQGKEATAVVDQILAQ-EENWKFEKNNEYGDTVYTIE-V-PF-HGKTFILKTFLPCPAELVYQEVILQPERMVLWN 96 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-GGGCEEEEECTTCCEEEEEE-E-TT-TEEEEEEEEEESSCHHHHHHHTTTCHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHhhC-CCCCEEEEecCCCCEEEEEe-c-CC-CCceEEEEEEecCCHHHHHHHHHhCccchhhcc
Confidence 35688999999999999874 34687753211222222111 0 11 1224589999999999998 66654 57888
Q ss_pred hcCCcceeeeeccCCCccHHHHHHHhhccc--ccccccceeeEEeeccccCCCcEEEEEeecCCCCCCCCCCCCCccccc
Q 003075 240 RDCRCLDVLSVIPTGNGGTIELIYMQTYAP--TTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRA 317 (850)
Q Consensus 240 ~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~--SPLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~f~r~ 317 (850)
..|...++|+.+..+.. ++-++..+ .++++.|||.++|+++.. ++.++||-.|++. +..|+...|+|+
T Consensus 97 ~~~~~~~vle~~~~~t~-----I~~~~~~p~~~~~~~~RDfv~~r~~~~~-~~~~vi~~~Sv~~----~~~P~~~~~VR~ 166 (229)
T 1em2_A 97 KTVTACQILQRVEDNTL-----ISYDVSAGAAGGVVSPRDFVNVRRIERR-RDRYLSSGIATSH----SAKPPTHKYVRG 166 (229)
T ss_dssp TTEEEEEEEEEETTTEE-----EEEEEECCBTTTTBCCEEEEEEEEEEEC-SSEEEEEEEECCC----TTSCCCTTSEEC
T ss_pred cccceEEEEEecCCCeE-----EEEEEecCcCCCCcCCCeeEEEEEEEEc-CCEEEEEEecccC----CCCCCCCCCEee
Confidence 88888899998875421 24446655 578999999999999987 5669999999974 445667789999
Q ss_pred cccccceeeeecC--CCceEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHHH-HHHhh
Q 003075 318 EMLASGFLIRPCE--GGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR-HIRQI 378 (850)
Q Consensus 318 ~rlPSGclIq~~~--nG~skVtwVeH~e~d~~~v~~l~Rpl~~Sg~afgar~~~~aLr-~~e~l 378 (850)
..++||++|++++ +|.|+|||+-|++..-+ +| +.++++.+.-+.--++..|| +|+.+
T Consensus 167 ~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~l~n~~~~~~~~~~~~~Lr~~~~~~ 226 (229)
T 1em2_A 167 ENGPGGMIVLKSASNPRVCTFVWILNTDLKGR-LP---RYLIHQSLAATMFEFAFHLRQRISEL 226 (229)
T ss_dssp EECSEEEEEEECSSCTTCEEEEEEECEECCSS-SC---HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eecccEEEEEecCCCCCcEEEEEEEEECCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999988 67899999999988765 66 57777776666667778886 66654
No 74
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=99.33 E-value=9.4e-12 Score=127.59 Aligned_cols=195 Identities=19% Similarity=0.259 Sum_probs=143.0
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCceEecCCCCCCCCcccceeccCCCcceeeeeeeEEeeChhhHHHHhc-C---ccchhh
Q 003075 165 GLLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLDPTKIAEILK-D---CPSWFR 240 (850)
Q Consensus 165 ~l~~~A~~am~Ell~la~~~~plWi~~~g~~~g~~~~~~~~~~~~~~~eASR~~glV~m~~~~LVe~lm-D---~~~W~~ 240 (850)
-...+|++||++++.+.+. +.-|......+.|-..+... . ++. +-.=|..++|...+..+.+.|+ | +.+|-.
T Consensus 11 ~y~~~~~~~~~~~l~~~~~-~~gW~~~~~~~~gv~vy~~~-~-~~~-g~~~k~~~~v~~~~~~v~~~l~~d~~~r~~Wd~ 86 (221)
T 3p0l_A 11 AYLQQGEEAMQKALGILSN-QEGWKKESQQDNGDKVMSKV-V-PDV-GKVFRLEVVVDQPMERLYEELVERMEAMGEWNP 86 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHS-CTTCEEEEECTTSCEEEEEE-C-SSS-CEEEEEEEEESSCHHHHHHHHTTTGGGTTTSCT
T ss_pred HHHHHHHHHHHHHHHHHhC-CCCCeEeeecCCCcEEEEEE-c-CCC-ceEEEEEEEEcCCHHHHHHHHHhccchhhhcCc
Confidence 3578999999999999863 45698862112232222111 1 122 4556999999999999999984 5 688999
Q ss_pred cCCcceeeeeccCCCccHHHHHHHhh-cccccccccceeeEEeeccccCCCcEEEEEeecCCCCCCCCCCCCCccccccc
Q 003075 241 DCRCLDVLSVIPTGNGGTIELIYMQT-YAPTTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEM 319 (850)
Q Consensus 241 ~f~~~~~l~~~~~g~~G~lqLm~aE~-~v~SPLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~f~r~~r 319 (850)
.|...++|+.+..+ + .+.|... ..+.+++++|||.++||.++. +|.++|+-.|++. +..|+...|+|+..
T Consensus 87 ~~~~~~vle~~~~~---t-~I~y~~~~~~~~~~v~~RDfv~~r~~~~~-~~~~vi~~~Sv~~----~~~P~~~g~VR~~~ 157 (221)
T 3p0l_A 87 NVKEIKVLQKIGKD---T-FITHELAAEAAGNLVGPRDFVSVRCAKRR-GSTCVLAGMATDF----GNMPEQKGVIRAEH 157 (221)
T ss_dssp TCSEEEEEEECSSS---E-EEEEEEECC---CCSCCEEEEEEEEEEEC-SSCEEECCEECCC----TTSCCCTTSEECEE
T ss_pred chheEEEEEecCCC---e-EEEEEeeccccCCccCCceEEEEEEEEEc-CCeEEEEEEeccC----CCCCCCCCeEEEec
Confidence 99999999988763 2 2333221 123468999999999999985 6899999999873 34556678999999
Q ss_pred cccceeeeecCCC--ceEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHHH-HHH
Q 003075 320 LASGFLIRPCEGG--GSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR-HIR 376 (850)
Q Consensus 320 lPSGclIq~~~nG--~skVtwVeH~e~d~~~v~~l~Rpl~~Sg~afgar~~~~aLr-~~e 376 (850)
+++|++|+++++| .|+|||+-|+|..-+ +| +.+++..+.-+.--++..|| +|+
T Consensus 158 ~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 213 (221)
T 3p0l_A 158 GPTCMVLHPLAGSPSKTKLTWLLSIDLKGW-LP---KSIINQVLSQTQVDFANHLRKRLE 213 (221)
T ss_dssp CSCEEEEEEETTEEEEEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cceEEEEEECCCCCCcEEEEEEEEecCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999988 999999999998866 55 45666666566666777776 555
No 75
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.29 E-value=8.5e-13 Score=130.56 Aligned_cols=61 Identities=18% Similarity=0.275 Sum_probs=54.4
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003075 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 16 ~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq 80 (850)
..+|+|+.||.+|+..||..|+.++||+..+|.+||.++ ||+++||++||||||+|+|+..
T Consensus 96 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l----~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 96 TPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQL----GLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----CcCHHHhhhcChhhhccccccC
Confidence 347889999999999999999999999999999999999 9999999999999999988743
No 76
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.28 E-value=2.1e-12 Score=109.83 Aligned_cols=54 Identities=22% Similarity=0.326 Sum_probs=50.0
Q ss_pred cCCHHHHHHHHHhHh---cCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003075 23 RYTPEQVEALERVYS---ECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (850)
Q Consensus 23 r~T~~Ql~~LE~~F~---~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq 80 (850)
+||.+|+..||..|. .+|||+..+|.+||..+ ||+++||++||||||+|.|+..
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~----~l~~~qV~~WFqNrR~r~kk~~ 60 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDT----GLTILQVNNWFINARRRIVQPM 60 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHSCC
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHh----CcCHHHhhhhhHHHHHHHhHHH
Confidence 799999999999999 99999999999999999 9999999999999999999743
No 77
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.08 E-value=2e-11 Score=124.17 Aligned_cols=59 Identities=27% Similarity=0.521 Sum_probs=53.1
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCC---------------------CChhhhhhhhhhhhH
Q 003075 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSN---------------------IEPKQIKVWFQNRRC 74 (850)
Q Consensus 16 ~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~g---------------------L~~rQVkvWFQNRRa 74 (850)
..+|+|+.||+.|+..||+.|..++||+...|.+||..| | |++.||++||||||+
T Consensus 114 k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~----~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~ 189 (194)
T 1ic8_A 114 KGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEEC----NRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRK 189 (194)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHH----HHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHH
T ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh----CchhhccccccccccccccccccCccccchhchhhhh
Confidence 346788899999999999999999999999999999999 9 999999999999999
Q ss_pred HHHH
Q 003075 75 REKQ 78 (850)
Q Consensus 75 k~Kr 78 (850)
|+|.
T Consensus 190 ~~k~ 193 (194)
T 1ic8_A 190 EEAF 193 (194)
T ss_dssp HCC-
T ss_pred hhhc
Confidence 8765
No 78
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.05 E-value=1.9e-10 Score=103.04 Aligned_cols=54 Identities=24% Similarity=0.282 Sum_probs=50.9
Q ss_pred ccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHH
Q 003075 22 VRYTPEQVEALERVYSE---CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 79 (850)
Q Consensus 22 ~r~T~~Ql~~LE~~F~~---~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krk 79 (850)
+-|+.+++..|+.+|.+ +|||+..+|.+||.++ ||+++||++||||||.|.|+.
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~t----gLt~~QV~~WF~NrR~R~kk~ 66 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQT----HLSTLQVCNWFINARRRLLPD 66 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHS----SSCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhhhH
Confidence 46899999999999988 8999999999999999 999999999999999998874
No 79
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.8e-10 Score=98.45 Aligned_cols=46 Identities=17% Similarity=0.369 Sum_probs=44.4
Q ss_pred HHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHH
Q 003075 26 PEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCR 75 (850)
Q Consensus 26 ~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak 75 (850)
.+|+..||..|..+++|+..++.+||..+ ||+.++||+||||||++
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~l----gL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAV----GLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHh----CCCHHHHHHHHhhcccc
Confidence 68999999999999999999999999999 99999999999999974
No 80
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=98.97 E-value=8e-10 Score=111.83 Aligned_cols=150 Identities=19% Similarity=0.260 Sum_probs=115.7
Q ss_pred eeeeeeeEEe-eChhhHHHHhcC---ccchhhcCCcceeeeeccCCCccHHHHHHHhhcccccccccceeeEEeeccccC
Q 003075 213 VAARACGLVS-LDPTKIAEILKD---CPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLE 288 (850)
Q Consensus 213 eASR~~glV~-m~~~~LVe~lmD---~~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~~ 288 (850)
-.-|..++|. ..+..+.+.|+| +.+|...+...++|+. .| . .++|.++..|.|+ ..|||.++|+++.++
T Consensus 52 ~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~~~~~~vle~--~~--~--~i~~~~~~~p~p~-~~RD~v~~~~~~~~~ 124 (214)
T 1ln1_A 52 YEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYVKELYEQEC--NG--E--TVVYWEVKYPFPM-SNRDYVYLRQRRDLD 124 (214)
T ss_dssp EEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTEEEEEEEEE--TT--E--EEEEEEECCCTTS-CCEEEEEEEEEEEEC
T ss_pred EEEEEEEEECCCCHHHHHHHHcCHHHHHHHHHHHhhEEEecc--CC--C--EEEEEEEEcCCCC-CCceEEEEEEEEecc
Confidence 4669999994 999999999999 7899988888888765 22 2 2578888888886 999999999998875
Q ss_pred -CC--cEEEEEeecCCCCCCCCCCCCCccccccccccceeeeecCCCceEEEEEEeeeccCCCccccchhhhhhhHHHHH
Q 003075 289 -DG--SLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQ 365 (850)
Q Consensus 289 -~G--~waVvDvSld~~~~~~~~~~~~~f~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~Rpl~~Sg~afga 365 (850)
+| .|+|+-.|++. |..|+...++|.+.+++|++|++..+|.|+||++-|+|.. ..+|.-+. +..+.-+.
T Consensus 125 ~~g~~~~~i~~~Sv~~----p~~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~~~~Dp~-G~iP~~l~---n~~~~~~~ 196 (214)
T 1ln1_A 125 MEGRKIHVILARSTSM----PQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPG-GQIPSWLI---NWAAKNGV 196 (214)
T ss_dssp STTCCEEEEEEEECCB----TTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCS-SCCCHHHH---HHHHHTHH
T ss_pred cCCCeEEEEEEecccC----CCCCCCCCcEEEEEEEEEEEEecCCCCceEEEEEEEECCC-CcccHHHH---HHHHHHHh
Confidence 66 49999999974 3355567899999999999999999999999999999988 56774333 22222233
Q ss_pred HHHHHHHH-HHHh
Q 003075 366 KMTMAAMR-HIRQ 377 (850)
Q Consensus 366 r~~~~aLr-~~e~ 377 (850)
-.++..|| +|+.
T Consensus 197 ~~~l~~l~k~~~~ 209 (214)
T 1ln1_A 197 PNFLKDMARACQN 209 (214)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 44455554 4543
No 81
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=98.94 E-value=7.2e-10 Score=117.39 Aligned_cols=128 Identities=21% Similarity=0.335 Sum_probs=104.8
Q ss_pred eeeeeeEEeeChhhHHHHhcCc---cchhhcCCcceeeeeccCCCccHHHHHHHhhccccc--ccccceeeEEeeccc-c
Q 003075 214 AARACGLVSLDPTKIAEILKDC---PSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTT--LAAARDFWLLRYSTS-L 287 (850)
Q Consensus 214 ASR~~glV~m~~~~LVe~lmD~---~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SP--Lvp~Re~~fLRyckq-~ 287 (850)
.=|..++|...+..|.+.|+|. .+|-..+...++|+.+... .++| ++..|+| ++++|||..|||.+. .
T Consensus 89 ~~k~~~~v~~~~~~v~~~L~D~~~R~~WD~~~~~~~vle~id~~-----~ivY-~~~~p~~~~~v~~RDFV~lr~~r~~~ 162 (258)
T 3fo5_A 89 SFHMEMVVHVDAAQAFLLLSDLRQRPEWDKHYRSVELVQQVDED-----DAIY-HVTSPALGGHTKPQDFVILASRRKPC 162 (258)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGGGGTCTTCCEEEEEEEEETT-----EEEE-EEEECCCTTCSSCEEEEEEEEEECCS
T ss_pred EEEEEEEEeCCHHHHHHHHhCchhHhHhhhhccEEEEEEEcCCC-----eEEE-EEecCCccCCCCCCEEEEEEEEEecc
Confidence 3488999999999999999886 5777788888888887754 2466 6667775 799999999999987 4
Q ss_pred CCCc-EEEEEeecCCCCCCCCCCCCCccccccccccceeeeecCCCceEEEEEEeeeccCCCccccc
Q 003075 288 EDGS-LVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVL 353 (850)
Q Consensus 288 ~~G~-waVvDvSld~~~~~~~~~~~~~f~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~ 353 (850)
.+|. .+|+-+|++. +..|+...|+|++.+||||+|+++++|.|+||++-|++- ..+|..-
T Consensus 163 ~~G~~yvi~~~SV~h----p~~Pp~~g~VR~~~~~sg~~I~P~~~~~t~VtY~~q~dp--G~lP~~~ 223 (258)
T 3fo5_A 163 DNGDPYVIALRSVTL----PTHRETPEYRRGETLCSGFCLWREGDQLTKVSYYNQATP--GVLNYVT 223 (258)
T ss_dssp STTCCEEEEEEEEEC----TTSCCCTTSEECCCSSEEEEEEEEETTEEEEEEEESCCG--GGHHHHH
T ss_pred CCCCEEEEEEEeccC----CCCCCCCCCEEEEEcCcEEEEEECCCCCEEEEEEEeeCC--CCCCceE
Confidence 5775 9999999984 446677789999999999999999999999999988873 4455433
No 82
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.89 E-value=7.7e-10 Score=114.04 Aligned_cols=57 Identities=28% Similarity=0.546 Sum_probs=51.5
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCC---------------------CChhhhhhhhhhhhH
Q 003075 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSN---------------------IEPKQIKVWFQNRRC 74 (850)
Q Consensus 16 ~~~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~g---------------------L~~rQVkvWFQNRRa 74 (850)
..+|.|+.|++.|+..||..|..++||+..+|.+||..| | |++.||++||||||+
T Consensus 141 k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~----n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~ 216 (221)
T 2h8r_A 141 KMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEEC----NRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRK 216 (221)
T ss_dssp -CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----HHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHT
T ss_pred CCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----ChhhhcccccccchhccccccccCHHHHHHHhHHhhh
Confidence 346778889999999999999999999999999999998 6 899999999999997
Q ss_pred HH
Q 003075 75 RE 76 (850)
Q Consensus 75 k~ 76 (850)
+.
T Consensus 217 ~~ 218 (221)
T 2h8r_A 217 EE 218 (221)
T ss_dssp TC
T ss_pred hh
Confidence 53
No 83
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=98.85 E-value=1.4e-08 Score=104.46 Aligned_cols=190 Identities=19% Similarity=0.291 Sum_probs=132.8
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCceEecCCCCCCCCcccceec-cCCCcceeeeeeeEEeeChhhHHHHhcCcc---chhh
Q 003075 165 GLLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAV-SRNCSGVAARACGLVSLDPTKIAEILKDCP---SWFR 240 (850)
Q Consensus 165 ~l~~~A~~am~Ell~la~~~~plWi~~~g~~~g~~~~~~~~~-~~~~~~eASR~~glV~m~~~~LVe~lmD~~---~W~~ 240 (850)
-+.+.+.++|..+..+ .+.-|-.... +.| +.++-. ..+..+-.-|..++|...+..|.+.|+|.. +|-.
T Consensus 25 ~~~~~~~e~l~~~~~~---~~~~W~~~~~-~~g---v~vy~~~~~~~~~~~~k~~~~v~~~~~~v~~~l~d~~~r~~Wd~ 97 (224)
T 1jss_A 25 SISTKLQNTLIQYHSI---EEDEWRVAKK-AKD---VTVWRKPSEEFNGYLYKAQGVMDDVVNNVIDHIRPGPWRLDWDR 97 (224)
T ss_dssp THHHHHHHHHHHHTTS---CGGGCEEEEE-ETT---EEEEEEECSSSSSEEEEEEEEESSCHHHHHHHHSSSTTHHHHCS
T ss_pred HHHHHHHHHHHHHhhh---CCCCCEEEEE-CCC---EEEEEEeccCCCceEEEEEEEEeCCHHHHHHHHhCccccccccc
Confidence 3556666666555443 2556876432 112 222211 223334566999999999999999999965 8988
Q ss_pred cCCcceeeeeccCCCccHHHHHHHhhcc-cccccccceeeEEeeccccCCCcEEEEEeecCCCCCCCCCCCCCccccccc
Q 003075 241 DCRCLDVLSVIPTGNGGTIELIYMQTYA-PTTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEM 319 (850)
Q Consensus 241 ~f~~~~~l~~~~~g~~G~lqLm~aE~~v-~SPLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~f~r~~r 319 (850)
.|-..++|+.+.... .+.|.-+.- +-|+|..|||.++|+.+..++| ++|+-+|++.. ..+ +.++|++.
T Consensus 98 ~~~~~~vle~id~~~----~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~-~vi~~~Sv~hp----~~~--~g~VR~~~ 166 (224)
T 1jss_A 98 LMTSLDVLEHFEENC----CVMRYTTAGQLLNIISPREFVDFSYTVGYEEG-LLSCGVSVEWS----ETR--PEFVRGYN 166 (224)
T ss_dssp SEEEEEEEEECSTTE----EEEEEEECCBTTTTBCCEEEEEEEEEEEETTE-EEEEEEECCCC----CCC--TTSEECEE
T ss_pred ceeeEEEEEEcCCCe----EEEEEEcccccCCCCCCCeEEEEEEEEEcCCe-EEEEEeeeecC----CCC--CCCEEEEe
Confidence 888888888775431 223332332 2356999999999999998877 78899998742 222 48999999
Q ss_pred cccceeeeecCCC--ceEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHHH-HHH
Q 003075 320 LASGFLIRPCEGG--GSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR-HIR 376 (850)
Q Consensus 320 lPSGclIq~~~nG--~skVtwVeH~e~d~~~v~~l~Rpl~~Sg~afgar~~~~aLr-~~e 376 (850)
+++|++|+++++| .|+|||+-|+|..-+ +| +.+++..+.-+...++..|| +|+
T Consensus 167 ~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 222 (224)
T 1jss_A 167 HPCGWFCVPLKDSPSQSLLTGYIQTDLRGM-IP---QSAVDTAMASTLANFYSDLRKGLR 222 (224)
T ss_dssp CSEEEEEEEETTEEEEEEEEEEECEECCSC-CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cccEEEEEEcCCCCCceEEEEEEEeCCCCC-cc---HHHHHHHHHHhHHHHHHHHHHHHh
Confidence 9999999999875 899999999998754 45 46676666666777777776 443
No 84
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.85 E-value=6.8e-10 Score=122.19 Aligned_cols=56 Identities=29% Similarity=0.599 Sum_probs=52.2
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHH
Q 003075 18 STKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 77 (850)
Q Consensus 18 ~rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~K 77 (850)
++.+..++..|+..||+.|+.++||+..+|.+||+++ ||+++||++||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~----~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKC----GITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHH----CcCHHHhhHhhhhcccccC
Confidence 3456789999999999999999999999999999999 9999999999999998865
No 85
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=98.43 E-value=1e-06 Score=92.08 Aligned_cols=198 Identities=14% Similarity=0.195 Sum_probs=128.8
Q ss_pred hhHHHHHHHHHHHHHHhcC---CCCceEecCCCCCCCCcccceeccCCCcceeeeeeeEEe-eChhhHHHHhcC---ccc
Q 003075 165 GLLAVAEETLAEFLSKATG---TAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVS-LDPTKIAEILKD---CPS 237 (850)
Q Consensus 165 ~l~~~A~~am~Ell~la~~---~~plWi~~~g~~~g~~~~~~~~~~~~~~~eASR~~glV~-m~~~~LVe~lmD---~~~ 237 (850)
.+.++++..+.|.+..+.. +..-|-.... +.|-..+.......|...-.=|..+.|. ..+..+.+.|+| +.+
T Consensus 23 ~~~~~~~~~~~e~l~~~~~~~~~~~~W~~~~~-~~gv~vy~~~~~~~g~~~~~~K~~~~~~~~~~~~v~~~l~d~~~r~~ 101 (255)
T 2e3n_A 23 RFVQKVEEMVQNHMTYSLQDVGGDANWQLVVE-EGEMKVYRREVEENGIVLDPLKATHAVKGVTGHEVCNYFWNVDVRND 101 (255)
T ss_dssp TTHHHHHHHHHHHHHHTTSCCTTCTTEEEEEE-ETTEEEEEECCEETTEECCCEEEEEEEETCCHHHHHHHHHCGGGHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEe-CCCEEEEEEEcCCCCceeeeEEEEEEEcCCCHHHHHHHHhCcchHhh
Confidence 4677788888888888774 3457977532 1221111100001111101246666665 789999999999 568
Q ss_pred hhhcCCcceeeeeccCCCccHHHHHHHhhcccccccccceeeEEeecccc----CC--CcEEEEEeecCCCCCCCCCCCC
Q 003075 238 WFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSL----ED--GSLVVCERSLTSSTGGPTGPPP 311 (850)
Q Consensus 238 W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~----~~--G~waVvDvSld~~~~~~~~~~~ 311 (850)
|-..+...++|+.+..+ + .++|..+..|.|+ ..|||.++|++++. ++ +.|+|+..|++. +..|+.
T Consensus 102 Wd~~~~~~~vle~i~~~--~--~i~y~~~~~p~p~-s~RDfV~~r~~~~~~~~~~~g~~~~~i~~~Sv~~----~~~P~~ 172 (255)
T 2e3n_A 102 WETTIENFHVVETLADN--A--IIIYQTHKRVWPA-SQRDVLYLSVIRKIPALTENDPETWIVCNFSVDH----DSAPLN 172 (255)
T ss_dssp HCCSEEEEEEEEEEETT--E--EEEEEEECCCTTS-CCEEEEEEEEEEEECCSSTTSCCEEEEEEEECCC----TTSCCC
T ss_pred hhhhcceeEEEEEcCCC--C--EEEEEEeecCCCc-CCceeEEEEEEEeccccccCCCCEEEEEEeccCC----CCCCCC
Confidence 88888888888887642 2 4567777788885 89999999999887 33 599999999984 234556
Q ss_pred Cccccccc---cccceeeeecCC--------CceEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHHH-HHH
Q 003075 312 SSFVRAEM---LASGFLIRPCEG--------GGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR-HIR 376 (850)
Q Consensus 312 ~~f~r~~r---lPSGclIq~~~n--------G~skVtwVeH~e~d~~~v~~l~Rpl~~Sg~afgar~~~~aLr-~~e 376 (850)
..++|... +.+|++|++..+ +.|+||++-|+|..- .+|.- +++.....+.-..+..|| +++
T Consensus 173 ~g~VR~~~~~~~~~~~~i~~~~g~~~l~~~~~~t~vt~~~~~Dp~G-~iP~~---lvn~~~~~~~~~~l~~L~k~v~ 245 (255)
T 2e3n_A 173 NRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGG-WAPAS---VLRAVAKREYPKFLKRFTSYVQ 245 (255)
T ss_dssp SSSEECEEEEEEEEEEEEC---CCCCCCGGGEEEEEEEEEEEECSS-CCCHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEeeeeeeeEeccCCCCcccccCCCcEEEEEEEEeCCCC-ccCHH---HHHHHHhccccHHHHHHHHHHH
Confidence 68899995 679999998733 579999999999774 46632 333333334444555554 444
No 86
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=98.42 E-value=6.1e-07 Score=89.16 Aligned_cols=126 Identities=17% Similarity=0.236 Sum_probs=94.7
Q ss_pred eeeeeeeEEeeChhhHHHHhcCc---cchhhcCCcceeeeeccCCCccHHHHHHHhhcccccccccceeeEEeeccccCC
Q 003075 213 VAARACGLVSLDPTKIAEILKDC---PSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLED 289 (850)
Q Consensus 213 eASR~~glV~m~~~~LVe~lmD~---~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~~~ 289 (850)
-.=|..++|...+..+.+.|+|. .+|...|...++|+. . ++. .++|.++..|-| +..|||.++|+.+..++
T Consensus 27 ~~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~~~~~~vle~-~---~~~-~i~y~~~~~p~p-~~~RD~v~~~~~~~~~~ 100 (189)
T 3qsz_A 27 REFRGEVRLKAAADDVVKVLRDANAFRQWMPDVAASELLKA-T---DTE-QYHYLDNSAPWP-VSNRDGVYHFTYEKAGD 100 (189)
T ss_dssp CEEEEEEEESSCHHHHHHHHHCGGGGGGTSTTEEEEEEEEE-C---SSE-EEEEEEECCSSS-CCCEEEEEEEEEEECTT
T ss_pred EEEEEEEEEECCHHHHHHHHHhHHHhhhHHHhcCEEEEEee-c---CCc-eEEEEEeecCCC-cCCcceEEEEEEEECCC
Confidence 45688999999999999999995 556556656677766 2 222 234666665555 79999999999998878
Q ss_pred CcEEEEEeecCCCCCCCCCCCCCccccccccccceeeeecCCCceEEEEEEeeeccCCCccc
Q 003075 290 GSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPE 351 (850)
Q Consensus 290 G~waVvDvSld~~~~~~~~~~~~~f~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~ 351 (850)
|...|+=.+ + .+..|+...++|.+.+++|++|++ .+|.|+||++-|+|..- .+|.
T Consensus 101 g~~~i~~~~-~----~~~~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~~~~dp~G-~iP~ 155 (189)
T 3qsz_A 101 GAITVRVEA-V----PDYLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQMHASPGG-SIPS 155 (189)
T ss_dssp SCEEEEEEE-C----TTSSCCCTTSEECCCEEEEEEEEE-CSSSEEEEEEEEECSCS-SSCH
T ss_pred CeEEEEEEc-C----CCccCCCCCeEEeeEeeEEEEEEE-CCCeEEEEEEEEeCCCC-CCCH
Confidence 876554333 2 234455678999999999999999 99999999999998873 4554
No 87
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.25 E-value=1.2e-07 Score=71.59 Aligned_cols=20 Identities=55% Similarity=0.896 Sum_probs=17.7
Q ss_pred hhhhhhhhhhhHHHHHHHHH
Q 003075 63 KQIKVWFQNRRCREKQRKEA 82 (850)
Q Consensus 63 rQVkvWFQNRRak~Krkq~~ 82 (850)
+||+|||||||+|+|+++.+
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 59999999999999996655
No 88
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=97.51 E-value=0.00095 Score=56.53 Aligned_cols=106 Identities=7% Similarity=-0.027 Sum_probs=77.1
Q ss_pred cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEEcCCCC
Q 003075 739 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGR 818 (850)
Q Consensus 739 ~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Gr 818 (850)
+.|.+|+..+.. .++-.++|+|+++.++|+++.+++.+.+...-..+..+......+.++.+.|-.....-....+.|+
T Consensus 5 ~~~~~i~~~d~~-~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 83 (115)
T 4eet_B 5 FIEKNFVITDPR-LPDNPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQRETTVQLINYTKSGK 83 (115)
T ss_dssp CCCCSEEEECTT-STTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTCC
T ss_pred cCCCcEEEEcCC-CCCCcEEEEcHHHHHHHCcCHHHHhCCCHHHhcCCCCChHHHHHHHHHHHcCCCcceEEEEecCCCC
Confidence 467777777663 1367999999999999999999999998766655555555555556666655433333344678899
Q ss_pred eEEEcceEEeEeecCCCCeeEEEEeecC
Q 003075 819 AVSYEQAVAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 819 rf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
.++++ ..+-.+.|++|...|...++.+
T Consensus 84 ~~~~~-~~~~~~~~~~g~~~~~~~~~~D 110 (115)
T 4eet_B 84 KFWNL-LHLQPVRDQKGELQYFIGVQLD 110 (115)
T ss_dssp EEEEE-EEEEEEECTTSCEEEEEEEEEE
T ss_pred EEEEE-EEEEEEECCCCCEEEEEEEEEe
Confidence 88874 5666788999999888777754
No 89
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=97.50 E-value=0.00084 Score=58.87 Aligned_cols=105 Identities=8% Similarity=-0.067 Sum_probs=78.9
Q ss_pred cCCCeEeecCCCCCC-CCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEEcCCC
Q 003075 739 HHSDAIMCCSLKTNA-SPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMG 817 (850)
Q Consensus 739 ~~~~avl~h~~~~~~-dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~G 817 (850)
+.|.+|+..+.+ . +=.++|+|.++.++|+++.+++.+.+...-..+..+......+.++...|-.....-....+.|
T Consensus 5 ~~~~~i~~~d~~--~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g 82 (128)
T 3t50_A 5 FTLMPMLITNPH--LPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPIDIDIINYKKSG 82 (128)
T ss_dssp CCSSCEEEECTT--STTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTC
T ss_pred cCcccEEEecCC--CCCCcEEEEcHHHHHHhCcCHHHHcCCCHhhhcCCccCHHHHHHHHHHHHcCCCceeEEEEEcCCC
Confidence 367788877764 3 5689999999999999999999999977666555555555566666666654444445567889
Q ss_pred CeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003075 818 RAVSYEQAVAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 818 rrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
+.++++ ..+--+.|++|...|...++.+
T Consensus 83 ~~~~~~-~~~~~i~~~~g~~~~~~~~~~D 110 (128)
T 3t50_A 83 EAFWNR-LHISPVHNANGRLQHFVSSQLD 110 (128)
T ss_dssp CEEEEE-EEEEEEECTTSCEEEEEEEEEE
T ss_pred CEEEEE-EEEEEEECCCCCEEEEEEEEEE
Confidence 988884 4566678999999888777754
No 90
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=97.47 E-value=0.0018 Score=54.45 Aligned_cols=112 Identities=7% Similarity=-0.062 Sum_probs=84.5
Q ss_pred hHHHHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCC
Q 003075 730 GDALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLP 808 (850)
Q Consensus 730 ~~~~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y 808 (850)
.++.++.++. .|.+|+..+.. -.+.|+|.++.++|+++-+++.+.+...-..+..+......+.++.+.|-...+
T Consensus 5 ~~~~~~~~~~~~~~~i~~~d~~----~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (124)
T 3lyx_A 5 ILKQRAKAFDYVFDAIVVTDLQ----GFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDTEHITSEVISAVENQGKWTG 80 (124)
T ss_dssp HHHHHHHGGGTCSSEEEEEETT----CBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHhhcCceEEEECCC----CcEeehhhHHHHHhCCCHHHHcCCCHHHhcCcchhhHHHHHHHHHHHcCCcccc
Confidence 3455677766 67777776644 589999999999999999999999988655666666666667777777765544
Q ss_pred CeeEEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003075 809 GGMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 809 ~GvRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
.-....+.|+.++++ ..+-.+.|++|...|...++.+
T Consensus 81 ~~~~~~~~g~~~~~~-~~~~~~~~~~g~~~~~~~~~~D 117 (124)
T 3lyx_A 81 EIRMLHKDGHIGWIE-SMCVPIYGENYQMVGALGINRD 117 (124)
T ss_dssp EEEEECTTSCEEEEE-EEEEEEECSTTCEEEEEEEEEE
T ss_pred eEEEEccCCCEEEEE-EEEEEEECCCCCEEEEEEEEec
Confidence 444567888888774 4666778999999988777754
No 91
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=97.40 E-value=0.0014 Score=60.10 Aligned_cols=112 Identities=6% Similarity=-0.073 Sum_probs=82.5
Q ss_pred HHHHHh-cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCee
Q 003075 733 LLKQLW-HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGM 811 (850)
Q Consensus 733 ~~~~L~-~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~Gv 811 (850)
.++.++ +.|.+|+..+.+ .+|-.++|+|.++.++|+++.+++.+.+...-..+..+......+.++...|-...+.-.
T Consensus 36 ~~~~~~~~~~~~i~~~d~~-~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 114 (166)
T 3ue6_A 36 SLVKALQMAQQNFVITDAS-LPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDKIRNAITKGVDTSVCLL 114 (166)
T ss_dssp HHHHHHHHTTSCEEEEETT-STTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHhcCCceEEEEEcc-CCCCcEEEECHHHHHHhCcCHHHHcCCCHhheeCCCCCHHHHHHHHHHHhcCCceEEEEE
Confidence 345554 488888887762 136789999999999999999999999977666555555555556666666654444445
Q ss_pred EEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003075 812 CVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 812 Riss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
...+.|+.++++ ..+--+.|++|...|...++.+
T Consensus 115 ~~~~~g~~~~~~-~~~~~i~~~~g~~~~~~~~~~D 148 (166)
T 3ue6_A 115 NYRQDGTTFWNL-FFVAGLRDSKGNIVNYVGVQSK 148 (166)
T ss_dssp EECTTSCEEEEE-EEEEEEECTTSCEEEEEEECCB
T ss_pred EEcCCCCEEEEE-EEEEeeeCCCCCEEEEEEEEEe
Confidence 567899999885 4566678999999998887765
No 92
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=97.33 E-value=0.0016 Score=57.19 Aligned_cols=104 Identities=7% Similarity=-0.066 Sum_probs=69.4
Q ss_pred CCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEEcCCCCeE
Q 003075 741 SDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGRAV 820 (850)
Q Consensus 741 ~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf 820 (850)
+++|+..+.. .+|-.++|+|.++.+|++|+-+|+++-+.+.-..+....+..+.+.++.+.|-.....-....+.|+.|
T Consensus 3 ~~~i~i~d~~-~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~ 81 (109)
T 1n9l_A 3 RHTFVVADAT-LPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPF 81 (109)
T ss_dssp SCEEEEEETT-STTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEE
T ss_pred ccEEEEEcCC-CCCCeEEEEchHHHHHHCcCHHHHcCCCchhcCCCCCCHHHHHHHHHHHHcCCcEEEEEEEEcCCCCEE
Confidence 4556665543 146789999999999999999999998765544333322223334444444433222334567999999
Q ss_pred EEcceEEeEeecCCCCeeEEEEeecC
Q 003075 821 SYEQAVAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 821 ~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
+++- .+=-+.|++|...+...++.+
T Consensus 82 ~~~~-~~~pi~d~~G~~~~~v~~~~D 106 (109)
T 1n9l_A 82 WNLL-TVTPIKTPDGRVSKFVGVQVD 106 (109)
T ss_dssp EEEE-EEEEEECTTSCEEEEEEEEEE
T ss_pred EEEE-EEEEEECCCCCEEEEEEEEEe
Confidence 9865 455678999998887776654
No 93
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=97.33 E-value=0.002 Score=56.86 Aligned_cols=108 Identities=13% Similarity=0.011 Sum_probs=73.3
Q ss_pred HHHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCe
Q 003075 732 ALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGG 810 (850)
Q Consensus 732 ~~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~G 810 (850)
..++.++. .|++|+..+.. =.+.|.|+++.++|+|+-+|+++.+...-..+..+......+.++.++|-. +.|
T Consensus 5 ~~~~~~~~~~~~~i~~~d~~----g~i~~~N~a~~~~~G~~~~elig~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~ 78 (120)
T 2gj3_A 5 EIFRQTVEHAPIAISITDLK----ANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKKP--WSG 78 (120)
T ss_dssp HHHHHHHHHCSSEEEEECTT----CBEEEECHHHHHHHCCCTTGGGGCBGGGGCCTTSCHHHHHHHHHHHHTTCC--EEE
T ss_pred HHHHHHHHhCCCeEEEECCC----CCEEeehHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCC--EEE
Confidence 45566654 88888877654 689999999999999999999998655433333333333344444554432 223
Q ss_pred --eEEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003075 811 --MCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 811 --vRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
....+.|+.|+++- .+=.+.|++|...|...++.+
T Consensus 79 e~~~~~~dG~~~~~~~-~~~pi~~~~g~~~~~v~~~~D 115 (120)
T 2gj3_A 79 VLVNRRKDKTLYLAEL-TVAPVLNEAGETIYYLGMHRD 115 (120)
T ss_dssp EEEEECTTSCEEEEEE-EEEEEECTTSCEEEEEEEEEE
T ss_pred EEEEEcCCCCEEEEEE-EEEEEECCCCCEEEEEEEecc
Confidence 34578999988754 455577999998887776654
No 94
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=97.26 E-value=0.0016 Score=61.19 Aligned_cols=112 Identities=8% Similarity=-0.047 Sum_probs=81.4
Q ss_pred HHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCee
Q 003075 733 LLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGM 811 (850)
Q Consensus 733 ~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~Gv 811 (850)
.++.++. .|.+|+..+.. .+|=.++|.|.++.++|+++-+++.+.+...-..+..+......+.++.+.|-.....-.
T Consensus 8 ~~~~~~~~~~~~i~~~d~~-~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 86 (176)
T 4hia_A 8 KIRAVFDRSGVALTLVDMS-LPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLGRELQVVLR 86 (176)
T ss_dssp HHHHHHHHCSSCCEEEETT-STTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHhcCCCcEEEEecC-CCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeCCCCCHHHHHHHHHHHHcCCceEEEEE
Confidence 3455554 78887777654 135789999999999999999999999977666666555555666677766654443444
Q ss_pred EEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003075 812 CVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 812 Riss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
...+.|+.|+++ ..+--+.|++|...|...++.+
T Consensus 87 ~~~~dG~~~~~~-~~~~pi~~~~g~~~~~~~~~~D 120 (176)
T 4hia_A 87 NYRANDEPFDNL-LFLHPVGGRPDAPDYFLGSQFE 120 (176)
T ss_dssp EECTTCCEEEEE-EEEEEESSBTTBCSEEEEEEEE
T ss_pred EEcCCCCEEEEE-EEEEEeeCCCCCeEEEEEEEEE
Confidence 567899999875 3455677899998887777654
No 95
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=97.15 E-value=0.0021 Score=65.14 Aligned_cols=112 Identities=12% Similarity=-0.016 Sum_probs=84.0
Q ss_pred HHHHHHhc-CCCeEeecCCCCCC-CCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCC
Q 003075 732 ALLKQLWH-HSDAIMCCSLKTNA-SPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPG 809 (850)
Q Consensus 732 ~~~~~L~~-~~~avl~h~~~~~~-dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~ 809 (850)
..++.++. .|.+|+..+.+ . |=.++|.|+++.++|+|+-+|+.+.+...-..+.........+.++.+.|-.....
T Consensus 63 ~~~~~i~~~~~~~i~~~d~~--~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~e 140 (258)
T 3p7n_A 63 QWVLDLIEASPIASVVSDPR--LADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQGVREHKPVLVE 140 (258)
T ss_dssp HHHHHHHHTCSSEEEEECTT--STTCCEEEECHHHHHHHCCCGGGTTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHhcCCccEEEEcCC--CCCCcEEEEhHHHHHHcCCCHHHHCCCChhhccCCCCchhHHHHHHHHHHcCCCeEEE
Confidence 44566654 88888888774 2 56899999999999999999999999877666665555555666666666544444
Q ss_pred eeEEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003075 810 GMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 810 GvRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
-....+.|..|+++- .+--+.|++|...|...++.+
T Consensus 141 ~~~~~~dG~~~~~~~-~~~pi~d~~g~~~~~v~~~~D 176 (258)
T 3p7n_A 141 ILNYKKDGTPFRNAV-LVAPIYDDDDELLYFLGSQVE 176 (258)
T ss_dssp EEEECTTSCEEEEEE-EEEEEECTTSCSEEEEEEEEE
T ss_pred EEEEcCCCCEEEEee-EEEEEEcCCCCEEEEEEEeee
Confidence 455789999998853 556678999999988777754
No 96
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=97.11 E-value=0.0029 Score=57.96 Aligned_cols=114 Identities=13% Similarity=0.028 Sum_probs=81.9
Q ss_pred HHHHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCC
Q 003075 731 DALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPG 809 (850)
Q Consensus 731 ~~~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~ 809 (850)
+..++.++. .+.+|+..+.. ..+..++|+|.++.++|+++-+++.+.+...-..+..+......+.++...|-.....
T Consensus 24 ~~~~~~i~~~~~~~i~~~d~~-~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (162)
T 3sw1_A 24 AQLLQSMVDASNDGIVVAEKE-GDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDRDQLGRARIRKAMAEGRPCREV 102 (162)
T ss_dssp HHHHHHHHHTCSSEEEEEEEE-TTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGTTTCCCCHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHhhccCcEEEEeCC-CCccEEEEECHHHHHHHCCCHHHHcCCCcceecCCCcCHHHHHHHHHHHhcCCCCcce
Confidence 455666655 78888777665 1122999999999999999999999998876665555555555666666666544433
Q ss_pred eeEEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003075 810 GMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 810 GvRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
-..+.+.|+.++++ ..+-.+.|++|...|...++.+
T Consensus 103 ~~~~~~~g~~~~~~-~~~~~i~~~~g~~~~~~~~~~D 138 (162)
T 3sw1_A 103 LRNYRKDGSAFWNE-LSITPVKSDFDQRTYFIGIQKD 138 (162)
T ss_dssp EEEECTTCCEEEEE-EEEEEEECSSSSCEEEEEEEEE
T ss_pred EEEECCCCCEEEEE-EEEEEeecCCCCEEEEEEEEEe
Confidence 44457888888874 4566677899998888777754
No 97
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=97.11 E-value=0.0015 Score=55.45 Aligned_cols=109 Identities=6% Similarity=-0.081 Sum_probs=74.5
Q ss_pred HHHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCe
Q 003075 732 ALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGG 810 (850)
Q Consensus 732 ~~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~G 810 (850)
+.++.++. .|.+|+..+. +=.+.|+|+++.++|+++-+++.+.+..--. |..++.....+.++.+.+-.....-
T Consensus 3 ~~~~~~~~~~~~~i~~~d~----~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (114)
T 3luq_A 3 ERLRLFTEHAPAALAMFDR----EMRYLAVSRRWREDYGLGDGDILGMSHYDIF-PEIGEEWKSVHRRGLAGEVIRVEED 77 (114)
T ss_dssp HHHHHHHHTCSSEEEEEET----TCBEEEECHHHHHHTTCCSSCCTTCBHHHHC-TTCCHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHhcCCceEEEEcC----CcEEEEECHHHHHHHCCCHHHHcCCcHHHHC-CccHHHHHHHHHHHhcCCcceeeee
Confidence 44566655 7777777654 4789999999999999999999998876555 4444555566667766443332222
Q ss_pred eEEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003075 811 MCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 811 vRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
....+.|+.++++ ..+--+.|++|...|...++.+
T Consensus 78 ~~~~~~g~~~~~~-~~~~p~~~~~g~~~~~~~~~~D 112 (114)
T 3luq_A 78 CFVRADGRTQWLR-WEVRPWYEGEGRVGGVVIFTED 112 (114)
T ss_dssp EEEC--CCEEEEE-EEEEEEECTTSCEEEEEEEEEE
T ss_pred EEEcCCCcEEEEE-EEEEEeECCCCCEEEEEEEEee
Confidence 3456788887774 3455678999999888777654
No 98
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=97.10 E-value=0.0052 Score=50.44 Aligned_cols=93 Identities=8% Similarity=-0.023 Sum_probs=63.6
Q ss_pred CCCeeEcccHHHHHhhccCHHHHhccc--ccccCChhcHHHHHHHHHHHHHhccccCCCeeEEcCCCCeEEEcceEEeEe
Q 003075 753 ASPVFTFANQAGLDMLETTLVALQDIM--LDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGRAVSYEQAVAWKV 830 (850)
Q Consensus 753 ~dP~F~YaN~aAL~l~e~~w~el~~lp--sr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf~i~~a~vW~l 830 (850)
+|-.+.|+|+++.++|+++-+++.+.+ ...-..+.........+.++...|-.....-....+.|+.++++ ..+--+
T Consensus 12 ~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~ 90 (110)
T 1byw_A 12 ENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCFLCL-VDVVPV 90 (110)
T ss_dssp SSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEE-EEEEEE
T ss_pred CCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCcCCHHHHHHHHHHHhcCCCceEEEEEEcCCCCEEEEE-EEEEEe
Confidence 467899999999999999999999988 55554444433333444455555543333333457788888774 345567
Q ss_pred ecCCCCeeEEEEeecC
Q 003075 831 LDDDDSNHCLAFMFMN 846 (850)
Q Consensus 831 ~d~~g~~~gqAa~F~~ 846 (850)
.|++|...|...++.+
T Consensus 91 ~~~~g~~~~~~~~~~D 106 (110)
T 1byw_A 91 KNEDGAVIMFILNFEV 106 (110)
T ss_dssp ECTTCCEEEEEEEEEE
T ss_pred ecCCCCEEEEEEEEEe
Confidence 7889998887776654
No 99
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=97.08 E-value=0.0048 Score=52.11 Aligned_cols=111 Identities=10% Similarity=0.020 Sum_probs=77.3
Q ss_pred HHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeE
Q 003075 734 LKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMC 812 (850)
Q Consensus 734 ~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 812 (850)
++.++. .+.+|+..+.. +.+-.+.|.|+++.++|+++-+++.+.+...-..+.........+.++...|-.....-..
T Consensus 8 ~~~~~~~~~~~i~~~d~~-d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (130)
T 2z6d_A 8 LKTALSTLQQTFVVSDAT-QPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIRDCVKNGKSYCGRLLN 86 (130)
T ss_dssp HHHHHHHTTCEEEEEETT-STTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHhcccceeeeecc-CCCCcEEEecHHHHHHhCcCHHHHcCCChhhccCCCCCchHHHHHHHHHHcCCcceeEEEE
Confidence 445544 78888777731 1356899999999999999999999988766655554444445555556655433323334
Q ss_pred EcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003075 813 VSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 813 iss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
+.+.|+.+++ ...+..+.|++|...|...++.+
T Consensus 87 ~~~~g~~~~~-~~~~~~~~~~~g~~~~~~~~~~D 119 (130)
T 2z6d_A 87 YKKDGTPFWN-LLTVTPIKDDQGNTIKFIGMQVE 119 (130)
T ss_dssp ECTTSCEEEE-EEEEEEEECTTSCEEEEEEEEEE
T ss_pred EcCCCcEEEE-EEEEEEEECCCCCeeEEEEEEec
Confidence 5677888877 45667788999999888777754
No 100
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=97.07 E-value=0.005 Score=53.68 Aligned_cols=101 Identities=9% Similarity=0.064 Sum_probs=76.0
Q ss_pred CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEEcCCCCe
Q 003075 740 HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGRA 819 (850)
Q Consensus 740 ~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grr 819 (850)
++++|+.++. |=.|+|.|.++.++|+|+-+|+.+.+..--..|.+++.-.+.+.++.+.|-.....=--+.+.|+.
T Consensus 8 ~~~~i~~~d~----~g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~ 83 (117)
T 3f1p_A 8 SKTFLSEHSM----DMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGY 83 (117)
T ss_dssp GGEEEEEECT----TCBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHSEEECCCEEEECTTSSE
T ss_pred CccEEEEECC----CceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHHHHHHHhCCCeeeeEEEEEecCCCE
Confidence 4566665544 468999999999999999999999887777778888888888888888776654432234788998
Q ss_pred EEEcceEEeEeecC-CCCeeEEEEeec
Q 003075 820 VSYEQAVAWKVLDD-DDSNHCLAFMFM 845 (850)
Q Consensus 820 f~i~~a~vW~l~d~-~g~~~gqAa~F~ 845 (850)
++++- .+--+.|+ +|...+...++.
T Consensus 84 ~w~~~-~~~~~~d~~~g~~~~iv~~~~ 109 (117)
T 3f1p_A 84 VWLET-QGTVIYNPRNLQPQCIMCVNY 109 (117)
T ss_dssp EEEEE-EEEEEEETTTTEEEEEEEEEE
T ss_pred EEEEE-eeEEEECCCCCCceEEEEEee
Confidence 88854 44456777 788777665553
No 101
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=97.04 E-value=0.004 Score=56.41 Aligned_cols=106 Identities=12% Similarity=0.034 Sum_probs=71.8
Q ss_pred HhcCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChh------------cHHHHHHHHHHHHHhcc
Q 003075 737 LWHHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEA------------GRKILCTEFAKIMQQGF 804 (850)
Q Consensus 737 L~~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~------------~r~er~~lL~~v~~qG~ 804 (850)
++.++.+|+..+.. +.+=.++|+|+++.++|+++-+|+.+.+...-..+. .+.... .+.++.++|-
T Consensus 31 ~~~~~~~i~~~d~~-d~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 108 (149)
T 3d72_A 31 PVDTSVALILCDLK-QKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTIN-TMRKAIDRNA 108 (149)
T ss_dssp SCCTTSCEEEEETT-STTCCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHH-HHHHHHHHTC
T ss_pred hhcCCccEEEEecc-CCCCcEEEECHHHHHHHCcCHHHHcCCChhHhCCccccccccccccccChHHHH-HHHHHHHCCC
Confidence 45566777776642 135689999999999999999999998876544443 333333 3444445444
Q ss_pred ccCCCeeEEcCCCCeEEEcceEEeEeecCCCCeeEEEEeec
Q 003075 805 AYLPGGMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFM 845 (850)
Q Consensus 805 ~~~y~GvRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~ 845 (850)
.....-....+.|+.++++- .+--+.|++|...|...++.
T Consensus 109 ~~~~e~~~~~~dG~~~~~~~-~~~~i~~~~g~~~~~v~~~~ 148 (149)
T 3d72_A 109 EVQVEVVNFKKNGQRFVNFL-TMIPVRDETGEYRYSMGFQC 148 (149)
T ss_dssp CEEEEEEEECTTCCEEEEEE-EEEEEECTTSSEEEEEEECC
T ss_pred ceEEEEEEECCCCCEEEEEE-EEEEEEcCCCCEEEEEEEEe
Confidence 33323334578999998853 45567799999988777664
No 102
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=96.91 E-value=0.0028 Score=55.71 Aligned_cols=105 Identities=10% Similarity=0.082 Sum_probs=66.9
Q ss_pred HHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChh-cHHHHHHHHHHHHHhccccCCCee
Q 003075 734 LKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEA-GRKILCTEFAKIMQQGFAYLPGGM 811 (850)
Q Consensus 734 ~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~-~r~er~~lL~~v~~qG~~~~y~Gv 811 (850)
++.++. +|.+|+. . .+=.+.|+|+++.+||+|+-+++.+.+...-..+. ........+.++.++|-.....-.
T Consensus 5 ~~~~~~~~~~~i~~---~--~~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 79 (120)
T 3mqq_A 5 YKTAFHLAPIGLVL---S--RDRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRI 79 (120)
T ss_dssp HHHHHHHCSSEEEE---E--ETTEEEEECHHHHHHTTSCHHHHTTCBGGGGSSSHHHHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred HHHHHhcCCceEEE---e--cCCEEHHHHHHHHHHhCcCHHHhCCCchhhccCChhhHHHHHHHHHHHHhcCCcceEEEE
Confidence 556665 7888753 2 25689999999999999999999999876554432 222333333344444432222233
Q ss_pred EEcCCCCeEEEcceEEeEeecCCCCeeEEEEeec
Q 003075 812 CVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFM 845 (850)
Q Consensus 812 Riss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~ 845 (850)
...+.|+.|+++- ....++.+|...|...+|.
T Consensus 80 ~~~~dG~~~~~~~--~~~~~~~~~~~~~~v~~~~ 111 (120)
T 3mqq_A 80 MKRAGGELFWCHV--TGRALDRTAPLAAGVWTFE 111 (120)
T ss_dssp EECTTSCEEEEEE--EEEESSTTSTTSSEEEEEE
T ss_pred EEeCCCCEEEEEE--EEEECCCCCCceeEEEEEE
Confidence 4678999998863 3455677776556555554
No 103
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=96.71 E-value=0.0035 Score=60.39 Aligned_cols=111 Identities=8% Similarity=0.008 Sum_probs=79.5
Q ss_pred hHHHHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCC
Q 003075 730 GDALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLP 808 (850)
Q Consensus 730 ~~~~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y 808 (850)
.++.++.++. .|.+|+..+.. |-.+.|+|.++.++|+++ ++++.+..--..+..+......+.++.+.|-...+
T Consensus 35 ~~~~l~~l~~~~~~~i~~~d~~---~g~i~~~N~a~~~l~G~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 109 (185)
T 3kx0_X 35 AAEDVRRIFEHIPAILVGLEGP---DHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSG 109 (185)
T ss_dssp CHHHHHHHHHHCSSEEEEEETT---TTEEEEECHHHHHHCCCC--SCTTSBHHHHCTTSCSSSSHHHHHHHHHHCCCEEE
T ss_pred hHHHHHHHHhcCCceEEEEECC---CcEEEEEcHHHHHHcCCc--cccCCcHHHHCCchhhhhHHHHHHHHHHcCCcccc
Confidence 3456777765 88888887743 679999999999999999 88888876666555555566778888888866554
Q ss_pred CeeEEcCC-----CCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003075 809 GGMCVSSM-----GRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 809 ~GvRiss~-----Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
..+++... |+..+++ ..+--+.|++|...|...++.+
T Consensus 110 ~~~~~~~~~~~~gg~~~~~~-~~~~pi~~~~g~~~g~~~~~~D 151 (185)
T 3kx0_X 110 SEWRLQTDYDGSGVEERYFD-FVVTPRRRADGSIEGVQLIVDD 151 (185)
T ss_dssp EEEEEC--------CCEEEE-EEEEEEECTTSCEEEEEEEEEE
T ss_pred cceeEEeeccCCCCccEEEE-EEEEEEECCCCCEEEEEEEEEe
Confidence 44555221 5656653 4555678999999998887754
No 104
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=96.71 E-value=0.012 Score=52.58 Aligned_cols=89 Identities=15% Similarity=0.056 Sum_probs=64.0
Q ss_pred HHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCC-C--
Q 003075 734 LKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLP-G-- 809 (850)
Q Consensus 734 ~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y-~-- 809 (850)
++.++. .|++|+..+.. =.+.|.|+|+.+||+|+-+|+++.+...-..+..+......+.+....|-.... .
T Consensus 18 ~~~l~~~~~d~i~~~d~~----g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (130)
T 1d06_A 18 LRSILDTVPDATVVSATD----GTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQRYMATGEKRIIGIDR 93 (130)
T ss_dssp HHHHHTTCSSEEEEEETT----SBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTSCE
T ss_pred HHHHHhhCcCeEEEECCC----CeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCchhHHHHHHHHHHHHhcCCccccCCee
Confidence 455555 88888887654 579999999999999999999999876655555565555667776666543211 1
Q ss_pred -eeEEcCCCCeEEEcceE
Q 003075 810 -GMCVSSMGRAVSYEQAV 826 (850)
Q Consensus 810 -GvRiss~Grrf~i~~a~ 826 (850)
-..+.+.|+.|+++-.+
T Consensus 94 e~~~~~kdG~~~~~~~~~ 111 (130)
T 1d06_A 94 VVSGQRKDGSTFPMKLAV 111 (130)
T ss_dssp EEEEECTTSCEEEEEEEE
T ss_pred EEEEEeCCCCEEEEEEEE
Confidence 13468999999987543
No 105
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=96.67 E-value=0.02 Score=49.29 Aligned_cols=111 Identities=7% Similarity=0.005 Sum_probs=71.9
Q ss_pred HHHHhcCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhccc--ccccCChhcHHHHHHHHHHHHHhccccCCCee
Q 003075 734 LKQLWHHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIM--LDKILDEAGRKILCTEFAKIMQQGFAYLPGGM 811 (850)
Q Consensus 734 ~~~L~~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lp--sr~sae~~~r~er~~lL~~v~~qG~~~~y~Gv 811 (850)
.+.+-+.|.+|+..+.. .++=.+.|+|+++.++|+++-+++.+.+ ...-..+.........+.++...|-.....=.
T Consensus 22 ~~~~~~~~~~i~~~d~~-~~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (138)
T 2l0w_A 22 IRKFEGQSRKFIIANAR-VENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALLGAEERKVEIA 100 (138)
T ss_dssp HHHHTTTTSEEEEEESS-STTCBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHTTCSSCEEEEEE
T ss_pred HHHHhcCCCCEEEEecC-CCCCEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcccchhHHHHHHHHHhhcCCceeEEE
Confidence 33444478888887762 0146899999999999999999999988 55544444444334444444444432222222
Q ss_pred EEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003075 812 CVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 812 Riss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
...+.|+.++++ ..+--+.|++|...|...+|.+
T Consensus 101 ~~~~~g~~~~~~-~~~~~~~~~~g~~~~~~~~~~D 134 (138)
T 2l0w_A 101 FYRKDGSCFLCL-VDVVPVKNEDGAVIMFILNFEV 134 (138)
T ss_dssp EECTTSCEEEEE-EEEEEEECTTSCEEEEEEEEEE
T ss_pred EECCCCCEEEEE-EEEEEEeCCCCCEEEEEEEEEe
Confidence 346788888774 3444567888998887766654
No 106
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=96.66 E-value=0.0046 Score=56.74 Aligned_cols=110 Identities=8% Similarity=-0.009 Sum_probs=78.0
Q ss_pred HHHHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCC
Q 003075 731 DALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPG 809 (850)
Q Consensus 731 ~~~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~ 809 (850)
++.++.++. .|.+|+..+.. |=.+.|.|.++.++|+++ ++.+.+..--..+..+......+.++.+.|-...+.
T Consensus 16 ~~~~~~~~~~~~~~i~~~d~~---~~~i~~~N~~~~~~~g~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 90 (158)
T 3k3c_A 16 AEDVRRIFEHIPAILVGLEGP---DHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSGS 90 (158)
T ss_dssp HHHHHHHHHHCSSEEEEEETT---TTEEEEECHHHHHHCTTC--CSTTSBHHHHSGGGGGTTHHHHHHHHHHHCCCEEEE
T ss_pred HHHHHHHHhcCCceEEEEECC---CcEeHHHHHHHHHHcCCc--hhcCCcHHHhCCchhHHHHHHHHHHHHHhCCccccc
Confidence 445666665 88888777633 578999999999999999 888888766666666666677888888877654433
Q ss_pred eeEE--cCC---CCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003075 810 GMCV--SSM---GRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 810 GvRi--ss~---Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
..++ ... |+..++ ...+--+.|++|...|...++.+
T Consensus 91 ~~~~~~~~~~~~g~~~~~-~~~~~pi~~~~g~~~g~~~~~~D 131 (158)
T 3k3c_A 91 EWRLQTDYDGSGVEERYF-DFVVTPRRRADGSIEGVQLIVDD 131 (158)
T ss_dssp EEEEEEESSSSCEEEEEE-EEEEEEEECTTSCEEEEEEEEEE
T ss_pred ceeEEeccCCCCcceEEE-EEEEEEeECCCCCEEEEEEEEEe
Confidence 3433 322 444444 34555677999999998887754
No 107
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=96.61 E-value=0.0057 Score=54.20 Aligned_cols=91 Identities=11% Similarity=0.045 Sum_probs=60.9
Q ss_pred hHHHHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCC
Q 003075 730 GDALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLP 808 (850)
Q Consensus 730 ~~~~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y 808 (850)
.++.++.++. +|++|+..+.. =.|.|.|+|+.+||+|+-+|+.+.+...-.++..+......+..+...+. ..+
T Consensus 9 se~~~~~l~e~~~d~i~~~d~~----g~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 83 (117)
T 2r78_A 9 QSNAYRALFEHAIDGIFIMDAE----GHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDSGWAAASLARIVGGEP-LRE 83 (117)
T ss_dssp HHHHHHHHHHHCSSEEEEECTT----SBEEEECHHHHHHHCCCHHHHTTCBTTTTTTCSTTSHHHHHHHHHHTTCC-EEE
T ss_pred hHHHHHHHHhcCCceEEEECCC----CCEEEecHHHHHHHCcCHHHHcCCCHHHhCCccchhHHHHHHHHHHcCCc-EEE
Confidence 3566777776 88888877654 57999999999999999999999876543332222222334444443332 223
Q ss_pred CeeEEcCCCCeEEEcce
Q 003075 809 GGMCVSSMGRAVSYEQA 825 (850)
Q Consensus 809 ~GvRiss~Grrf~i~~a 825 (850)
.-..+.+.|+.|+++-.
T Consensus 84 e~~~~~kdG~~~~v~~~ 100 (117)
T 2r78_A 84 ERTVWTRNGDQLTVELS 100 (117)
T ss_dssp EEEEECTTSCEEEEEEE
T ss_pred EEEEEecCCCEEEEEEE
Confidence 34456899999888643
No 108
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=96.54 E-value=0.019 Score=51.44 Aligned_cols=103 Identities=8% Similarity=-0.076 Sum_probs=63.7
Q ss_pred cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEEcCCCC
Q 003075 739 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGR 818 (850)
Q Consensus 739 ~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Gr 818 (850)
+.|++|+..+.. ..|=.+.|.|+++.++|+|+-+|+++.+...-..+.........+.+..++|-...+.-....+.|+
T Consensus 7 ~~~~~i~~~d~~-g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~ 85 (132)
T 2pr5_A 7 HVRVGVVITDPA-LEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKKDGT 85 (132)
T ss_dssp CCCCEEEEECTT-STTCCEEEECHHHHHHHSCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSC
T ss_pred cCCCcEEEEeCC-CCCCcEEEECHHHHHHhCcCHHHHcCCChhhhCCCCCCHHHHHHHHHHHHcCCCeEEEEEEEecCCC
Confidence 478888877654 1145899999999999999999999987654433332222233444445555433222334678999
Q ss_pred eEEEcceEEeEeecCCCCeeEEEEeec
Q 003075 819 AVSYEQAVAWKVLDDDDSNHCLAFMFM 845 (850)
Q Consensus 819 rf~i~~a~vW~l~d~~g~~~gqAa~F~ 845 (850)
.|+++-.+ =.+.|++ ..+...++.
T Consensus 86 ~~~~~~~~-~~~~~~~--~~~~~~~~~ 109 (132)
T 2pr5_A 86 MFWNELNI-DPMEIED--KTYFVGIQN 109 (132)
T ss_dssp EEEEEEEE-EEEEETT--EEEEEEEEE
T ss_pred eeeeEEEE-EeccCCC--eeEEEEEEE
Confidence 99886433 2344554 445444443
No 109
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=96.52 E-value=0.022 Score=49.28 Aligned_cols=106 Identities=6% Similarity=-0.029 Sum_probs=74.5
Q ss_pred cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEEcCCCC
Q 003075 739 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGR 818 (850)
Q Consensus 739 ~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Gr 818 (850)
..|.+|+..+.. +++-.+.|+|.++.++|+++-+++.+.+...-..+..+......+.++...|-.....-....+.|+
T Consensus 10 ~~~~~i~~~d~~-~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 88 (146)
T 2v0u_A 10 RIEKNFVITDPR-LPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGK 88 (146)
T ss_dssp GSSSCEEEECTT-STTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTCC
T ss_pred cCCCcEEEEcCC-CCCceEEEEcHHHHHHHCcCHHHHcCCCHHHhcCCcCChHHHHHHHHHHhcCCCcceEEEEEecCCc
Confidence 367777776652 1256899999999999999999999998776655555555555555666665443333445577888
Q ss_pred eEEEcceEEeEeecCCCCeeEEEEeecC
Q 003075 819 AVSYEQAVAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 819 rf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
.+++. ..+-.+.|++|...|...++.+
T Consensus 89 ~~~~~-~~~~~~~~~~g~~~~~~~~~~D 115 (146)
T 2v0u_A 89 KFWNL-FHLQPMRDQKGDVQYFIGVQLD 115 (146)
T ss_dssp EEEEE-EEEEEEECTTSCEEEEEEEEEE
T ss_pred EEEEE-EEEEEeECCCCCEEEEEEEEee
Confidence 87774 4555677899998887776644
No 110
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=96.50 E-value=0.19 Score=51.05 Aligned_cols=149 Identities=14% Similarity=0.156 Sum_probs=89.5
Q ss_pred chHHHHHHHHHHHHHhhhccCCCCCCccccccCCCcceEEEEecCCCCCCCCCCccCCCCCCceeEEEeeecccccCChH
Q 003075 394 PAVLRTFSQRLSRGFNDAINGFLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPA 473 (850)
Q Consensus 394 ~~sl~~LaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~ 473 (850)
.+.+.++|+..+..|-.-+.. ..+|.... ..++|+|..+...+ . ++. ..++...+ ++||+
T Consensus 21 ~~~y~~~a~~~~~~~l~~~~~--~~~W~~~~--~~~gv~v~~~~~~~-----~--------~~~--~~k~~~~v-~~~~~ 80 (231)
T 2r55_A 21 QSMAAQMSEAVAEKMLQYRRD--TAGWKICR--EGNGVSVSWRPSVE-----F--------PGN--LYRGEGIV-YGTLE 80 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--CSSCEEEE--CCSSEEEEEEECSS-----S--------SSE--EEEEEEEE-SSCHH
T ss_pred HHHHHHHHHHHHHHHHHHhcC--CCCCEEEE--eCCCEEEEEEccCC-----C--------CCc--EEEEEEEE-CCCHH
Confidence 347999999999998886643 47898775 35689998876531 1 122 33555666 89999
Q ss_pred HHHHHH--hh--hhcccccccccchhhhhhccCCCCCCCCCCCCCCCcceEeeccccCCCCceEEEEEecCCCCCccccc
Q 003075 474 LLVRFL--RE--HRSEWADYGVDAYSAACLKASPYAVPCARPGGFPSSHVILPLAHTVEHEEFLEVVRLEGHAFSPEDVA 549 (850)
Q Consensus 474 ~lf~FL--Rd--~R~eWd~~~~d~~s~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~ 549 (850)
.||++| .| .|.+||.. +. ...++..|. .... |++... .+.-...+
T Consensus 81 ~v~~~l~~~d~~~r~~Wd~~----~~--------------------~~~vle~i~----~~~~--i~~~~~-~~~~~~~v 129 (231)
T 2r55_A 81 EVWDCVKPAVGGLRVKWDEN----VT--------------------GFEIIQSIT----DTLC--VSRTST-PSAAMKLI 129 (231)
T ss_dssp HHHHHHCC--CCSHHHHCTT----CS--------------------EEEEEEECS----SSEE--EEEEEC-CCBTTTTB
T ss_pred HHHHHHHhhCcchhhhhccc----cc--------------------eeEEEEEcC----CCEE--EEEEEe-ccccCCcc
Confidence 999999 76 89999973 11 123444442 1112 233211 01001135
Q ss_pred cccceEeEeeccCcCCCCCCceeE-EEeecccCCC----CCC--CccccCceEEec
Q 003075 550 LARDMYLLQLCSGIDENTVGACAQ-LVFAPIDESF----ADD--APLLASGFRVIP 598 (850)
Q Consensus 550 ~s~~~liLQe~~~~De~~~Gs~s~-vVyAPvD~~d----s~~--v~LLPSGF~I~P 598 (850)
-+||..+|.-+ ..+++ | ++ ++.-.||-+. +.+ +.++|+||.|-|
T Consensus 130 ~~RDfv~~r~~-~~~~~--g--~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p 180 (231)
T 2r55_A 130 SPRDFVDLVLV-KRYED--G--TISSNATHVEHPLCPPKPGFVRGFNHPCGCFCEP 180 (231)
T ss_dssp CCEEEEEEEEE-EECTT--S--CEEEEEEECCCTTSCCCTTCEEEEECSEEEEEEE
T ss_pred CCCeEEEEEEE-EEcCC--C--EEEEEEEeccCCCCCCCCCCEEEEEEeeEEEEEE
Confidence 57788888775 34422 5 34 4566677542 233 347889999998
No 111
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=96.40 E-value=0.019 Score=60.29 Aligned_cols=107 Identities=6% Similarity=-0.041 Sum_probs=79.1
Q ss_pred hcCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEEcCCC
Q 003075 738 WHHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMG 817 (850)
Q Consensus 738 ~~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~G 817 (850)
-+.|++|+..+.. .+|=.++|+|+++.++|+|+-+|+.+.+...-..+..+.+....+.++.+.|-.....-....+.|
T Consensus 18 ~~~~~~i~~~D~~-~~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG 96 (332)
T 2wkq_A 18 ERIEKNFVITDPR-LPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSG 96 (332)
T ss_dssp GGCCSEEEEECTT-STTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTC
T ss_pred hcCCCcEEEecCC-CCCCCEEEeehHHHHHhCCCHHHHcCCCchhhcCCCCCHHHHHHHHHHHHcCCeeEEEEEEEcCCC
Confidence 4578888887762 125789999999999999999999999887655555555555555566666544333334567899
Q ss_pred CeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003075 818 RAVSYEQAVAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 818 rrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
+.++++ ..+--+.|++|...|...++.+
T Consensus 97 ~~~~~~-~~~~pi~d~~g~~~~~v~~~~D 124 (332)
T 2wkq_A 97 KKFWNL-FHLQPMRDQKGDVQYFIGVQLD 124 (332)
T ss_dssp CEEEEE-EEEEEEECTTSCEEEEEEEEEE
T ss_pred CEEEEe-eEEEEeEcCCCCEEEEEEEecc
Confidence 999885 4667788999999998887754
No 112
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=96.34 E-value=0.013 Score=51.36 Aligned_cols=101 Identities=10% Similarity=0.106 Sum_probs=70.1
Q ss_pred cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHH-hccccCCCeeE-EcCC
Q 003075 739 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQ-QGFAYLPGGMC-VSSM 816 (850)
Q Consensus 739 ~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~-qG~~~~y~GvR-iss~ 816 (850)
+++++|+.++. |=.|+|.|.++.++|+|+-+|+.+.+..--..|.+++.-...+.++.+ .|-...+ =.| ..+.
T Consensus 10 ~~~d~i~~~d~----~g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~~-e~r~~~~d 84 (121)
T 3f1p_B 10 QPTRFISRHNI----EGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSV-MFRFRSKN 84 (121)
T ss_dssp CCCEEEEEECT----TSBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHHHHHHHHTTSTTCCEEE-EEEEECTT
T ss_pred CCCceEEEECC----CceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHHHHHHHHHhcCCCcccE-EEEEEecC
Confidence 36666666654 468999999999999999999999987666667777766666666663 3322222 123 4788
Q ss_pred CCeEEEcceEEeEeecC-CCCeeEEEEeec
Q 003075 817 GRAVSYEQAVAWKVLDD-DDSNHCLAFMFM 845 (850)
Q Consensus 817 Grrf~i~~a~vW~l~d~-~g~~~gqAa~F~ 845 (850)
|+.++++- .+--+.|+ +|...+...++.
T Consensus 85 G~~~w~~~-~~~~~~~~~~g~~~~iv~~~~ 113 (121)
T 3f1p_B 85 QEWLWMRT-SSFTFQNPYSDEIEYIICTNT 113 (121)
T ss_dssp SCEEEEEE-EEEEECCTTCCCCCEEEEEEE
T ss_pred CCEEEEEE-EEEEEECCCCCceeEEEEEeE
Confidence 99888863 34445676 688777665554
No 113
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=96.25 E-value=0.046 Score=54.32 Aligned_cols=105 Identities=10% Similarity=-0.019 Sum_probs=72.7
Q ss_pred HhcCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEEcCC
Q 003075 737 LWHHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSM 816 (850)
Q Consensus 737 L~~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~ 816 (850)
+-+.+.+|+..+. +-.++|.|.++.++++|+-+|+++.+.+.-..+....+-...+.+..+.|-.....=....+.
T Consensus 117 ~~~~~~~i~~~d~----~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k~ 192 (227)
T 3ewk_A 117 MDANSEMILLTDR----AGRIIYANPALCRFSGMAEGELLGQSPSILDSPLADQETLAAMQEALQAGQPWSGRLLNRRRT 192 (227)
T ss_dssp HHTCCSEEEEECT----TSCEEEECHHHHHHHTCCTHHHHSSCGGGGBCTTSCHHHHHHHHHHHHHTCCEECCEEEEEEC
T ss_pred HhcCcCeEEEEcC----CCcEEEEchHHHHHhCCCHHHHcCCChhhccCCCCCHHHHHHHHHHHHcCCceeEEEEEECCC
Confidence 3457777777653 468999999999999999999999887665545444444444555555554333344456677
Q ss_pred CC------eEEEcceEEeEeecCCCCeeEEEEeecC
Q 003075 817 GR------AVSYEQAVAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 817 Gr------rf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
|+ .|+++- .+=-+.|++|...|-..++.+
T Consensus 193 G~~~~dg~~~~~~~-~~~pi~d~~g~~~~~v~i~~D 227 (227)
T 3ewk_A 193 GPAPHDAEDYWAEI-STTPIHTDGNGLVGYVQIQHD 227 (227)
T ss_dssp CSSSSCEEEEEEEE-EEEEEECSSSCEEEEEEEEEC
T ss_pred CCcCcccceEEEEE-EEEEEECCCCCEEEEEEEecC
Confidence 76 677643 455678999999988777653
No 114
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=96.10 E-value=0.028 Score=54.24 Aligned_cols=108 Identities=13% Similarity=0.060 Sum_probs=75.6
Q ss_pred HHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhcccc-----
Q 003075 733 LLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAY----- 806 (850)
Q Consensus 733 ~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~----- 806 (850)
+++.++. .|++|+.-+. |=.++|.|+++.++++++-+|+++-+..--.++ .++.-.+.+.+|.+.|--.
T Consensus 23 ~l~~il~~~~~gi~v~D~----~g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p~-~~~~~~~~l~~vl~~G~~~~~~~~ 97 (152)
T 3mxq_A 23 LLSELLDQLSFALCIVRN----DYVIVKVNEYFESRVIFDGETMQGKNILELFPE-SADYLKRKIDTALVIESSSFSSWE 97 (152)
T ss_dssp HHHHHHHHHCCEEEEEET----TSBEEEECHHHHHTSSSCHHHHTTSBHHHHSGG-GHHHHHHHHHHHHHHTSCEEEECC
T ss_pred HHHHHHhcCCCCEEEEcC----CCEEEEECHHHHHHHCcCHHHHCCCCHHHhcCC-hHHHHHHHHHHHHhcCCceeeecc
Confidence 3455544 6888887654 478999999999999999999999887766666 5555666788888877421
Q ss_pred -------CCCeeEEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003075 807 -------LPGGMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 807 -------~y~GvRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
...+-.+++.|+.+ +-+.+++-|.|++|.+.|.++++.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~-~~~~ti~Pl~d~~G~v~gv~~ii~D 143 (152)
T 3mxq_A 98 QKPHLLPFKSSRPVSGEEEQM-YQNLEVIPIHSEDGTIEHVCLCVYD 143 (152)
T ss_dssp SSSCSSCC----------CCE-EEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred cccccccccccCCCCCCCcEE-EEEEEEEEEECCCCCEEEEEEEEEE
Confidence 11122345566544 4578999999999999999988755
No 115
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=96.05 E-value=0.039 Score=48.25 Aligned_cols=83 Identities=8% Similarity=0.043 Sum_probs=59.7
Q ss_pred CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCC-Ce---eEEcC
Q 003075 740 HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLP-GG---MCVSS 815 (850)
Q Consensus 740 ~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y-~G---vRiss 815 (850)
+|++|+..+. +=.+.|.|.++.+||+|+-+|+++.+...-..+..+......+......|-.... .+ ....+
T Consensus 2 ~~d~i~~~d~----~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (119)
T 2vv6_A 2 IPDAMIVIDG----HGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRR 77 (119)
T ss_dssp CCCEEEEEET----TSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECT
T ss_pred CcceEEEECC----CCeEEEEhHHHHHHhCCCHHHHcCCCHHHhCCchHHHHHHHHHHHHhcCCCcccCCCceEEEEEeC
Confidence 5677777654 4689999999999999999999999877655565565555667777666653221 12 23579
Q ss_pred CCCeEEEcceE
Q 003075 816 MGRAVSYEQAV 826 (850)
Q Consensus 816 ~Grrf~i~~a~ 826 (850)
.|+.|+++-.+
T Consensus 78 dG~~~~~~~~~ 88 (119)
T 2vv6_A 78 DGTTFPMHLSI 88 (119)
T ss_dssp TSCEEEEEEEE
T ss_pred CCCEEEEEEEE
Confidence 99999987543
No 116
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=96.02 E-value=0.021 Score=56.76 Aligned_cols=93 Identities=8% Similarity=-0.057 Sum_probs=67.2
Q ss_pred CCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEEcCCCCeEEEcceEEeEeec
Q 003075 753 ASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGRAVSYEQAVAWKVLD 832 (850)
Q Consensus 753 ~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf~i~~a~vW~l~d 832 (850)
.+=.++|+|.++.+||+|+.+|+.+.+.+.-..+...++....+.+....|-...+.-....+.|+.|+++- .+=-+.|
T Consensus 7 ~~g~i~~~N~a~~~l~Gy~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~-~~~p~~d 85 (227)
T 3ewk_A 7 LQGRILYANDNFCAVSRYGREELVGQDHRIVNSGYHGKAYIRDMWRTISRGNIWQGEFCNRRKDGTRYWVDS-TIVPLMD 85 (227)
T ss_dssp TTCBEEEECHHHHHHTTCCHHHHTTSBGGGGCCSCSCHHHHHHHHHHHTTTCCEEEEEEEECSSSCEEEEEE-EEEEEEC
T ss_pred CCCcEEehHHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCeEEEEEEEEcCCCCEEeeee-EEEEEEc
Confidence 356799999999999999999999998776554443334444444555566554444556789999999853 5556789
Q ss_pred CCCCeeEEEEeecC
Q 003075 833 DDDSNHCLAFMFMN 846 (850)
Q Consensus 833 ~~g~~~gqAa~F~~ 846 (850)
++|...|..+++.+
T Consensus 86 ~~g~~~~~~~~~~D 99 (227)
T 3ewk_A 86 NAGKPRQYISIRRD 99 (227)
T ss_dssp SSSCEEEEEEEEEE
T ss_pred CCCCEEEEEEEEEe
Confidence 99999887766643
No 117
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=95.93 E-value=0.067 Score=44.97 Aligned_cols=109 Identities=10% Similarity=0.002 Sum_probs=70.6
Q ss_pred HHHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhccc--ccccCChhcHHHHHHHHHHHHHhccccCC
Q 003075 732 ALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIM--LDKILDEAGRKILCTEFAKIMQQGFAYLP 808 (850)
Q Consensus 732 ~~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lp--sr~sae~~~r~er~~lL~~v~~qG~~~~y 808 (850)
..++.++. .|.+|+..+.. +=.+.|.|.++.++|+++-+++.+.+ ......+.++..-...+.++. .|-...
T Consensus 11 ~~~~~~~~~~~~~i~~~d~~---~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~- 85 (125)
T 3eeh_A 11 RRVRELTEATNDILWEFTAD---LSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTMQSLM-DGESAD- 85 (125)
T ss_dssp HHHHHHHSCCCCEEEEEETT---SSCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHHHHHH-TTCCEE-
T ss_pred HHHHHHHhcCCceEEEEEcC---CCcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHHHHHHHH-cCCCcc-
Confidence 44566655 67776666543 25899999999999999999999887 333345666555555555533 332221
Q ss_pred CeeE-EcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003075 809 GGMC-VSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 809 ~GvR-iss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
.-+| ..+.|+.++++- .+--+.|++|...|...++.+
T Consensus 86 ~e~~~~~~~g~~~~~~~-~~~~~~~~~g~~~~~~~~~~D 123 (125)
T 3eeh_A 86 VECRVNATEEYQRWVWI-QGEPITNDAGETVRVAGFARD 123 (125)
T ss_dssp EEEEECGGGTTCEEEEE-EEEEEECTTSCEEEEEEEEEE
T ss_pred EEEEEEcCCCCEEEEEE-ecEEEECCCCCEEEEEEEEEe
Confidence 1233 345687777643 455577889998887766643
No 118
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=95.93 E-value=0.054 Score=46.07 Aligned_cols=82 Identities=22% Similarity=0.161 Sum_probs=56.4
Q ss_pred HHHHh-cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeE
Q 003075 734 LKQLW-HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMC 812 (850)
Q Consensus 734 ~~~L~-~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 812 (850)
++.++ +.+++|+..+.+ =.++|.|.++.++|+|+-+++.+++...-.++..... +..+.+.+. ..+.-..
T Consensus 15 ~~~~~~~~~~~i~~~d~~----g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~~~~~----~~~~~~~~~-~~~e~~~ 85 (118)
T 3olo_A 15 AHYLINNAVEASFCLGDN----WQFLYVNDATCRMTEYSREQLLSMNLQDIDVDFALHD----WEEIRQKNN-YTFKTRY 85 (118)
T ss_dssp HHHHHHHCSSEEEEECTT----SBEEEECHHHHHHHCCCHHHHTTCBGGGTBTTGGGSC----HHHHHHHSE-EEEEEEE
T ss_pred HHHHHhcCCceEEEECCC----CcEEEEHHHHHHHHCCCHHHHhCCChhhcccccCHHH----HHHHHhcCc-EEEEEEE
Confidence 34454 488888887654 5899999999999999999999998765543333222 334444443 2344455
Q ss_pred EcCCCCeEEEcc
Q 003075 813 VSSMGRAVSYEQ 824 (850)
Q Consensus 813 iss~Grrf~i~~ 824 (850)
..+.|+.++++-
T Consensus 86 ~~~~g~~~~~~~ 97 (118)
T 3olo_A 86 RSQSGRIFLVEM 97 (118)
T ss_dssp ECTTCCEEEEEE
T ss_pred EccCCCEEEEEE
Confidence 678999888864
No 119
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=95.92 E-value=0.03 Score=48.36 Aligned_cols=104 Identities=13% Similarity=0.116 Sum_probs=62.4
Q ss_pred HHHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCe
Q 003075 732 ALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGG 810 (850)
Q Consensus 732 ~~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~G 810 (850)
..++.++. .|++|+..+.. =.++|.|+++.++|+++-+++.+.+..--.++...+.......++...|-..
T Consensus 19 ~~~~~i~~~~~~~i~~~d~~----g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 90 (125)
T 3fc7_A 19 KKFESLVSDSPDGIVHLTTN----GTILSVNPSMAGRLGADPDTLVGQQLSAVMDSEAANQRLEAGKSAVENGTAT---- 90 (125)
T ss_dssp -------CCSCCEEEEEETT----SBEEEECHHHHHHHTSCHHHHTTSBGGGSSCHHHHHHHHHHHHHHHHHTSCE----
T ss_pred HHHHHHHhcCCCeEEEEcCC----CeEEEECHHHHHHhCCCHHHHcCccHHHhCCHHHHHHHHHHHHHHhcCCCeE----
Confidence 34556655 78888887654 6899999999999999999999999877775544555555556666666422
Q ss_pred eEEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003075 811 MCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 811 vRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
......| ..+++ ..+-.+ .++|...|...+|.+
T Consensus 91 ~~~~~~~-~~~~~-~~~~p~-~~~~~~~~~~~~~~D 123 (125)
T 3fc7_A 91 RSEDAVG-GRHYH-NQYIPV-DSHRKSDTFQLVSRD 123 (125)
T ss_dssp EEEEEET-TEEEE-EEEEES-STTTTTTEEEEEEEE
T ss_pred EeEcCCC-cEEEE-EEEEeE-ecCCCeEEEEEEEec
Confidence 2222331 33332 222234 344665666666543
No 120
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=95.82 E-value=0.025 Score=48.26 Aligned_cols=108 Identities=9% Similarity=-0.069 Sum_probs=70.4
Q ss_pred HHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcc--cccccCChhcHHHHHHHHHHHHHhccccCCCe
Q 003075 734 LKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDI--MLDKILDEAGRKILCTEFAKIMQQGFAYLPGG 810 (850)
Q Consensus 734 ~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~l--psr~sae~~~r~er~~lL~~v~~qG~~~~y~G 810 (850)
++.+.. +|.+|...+.+ -.++|.|.++.++|+++-+++.+. .......|.+++.-...+.++.+.|-.....-
T Consensus 9 l~~~~~~~~~~i~~~d~~----~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~e~ 84 (125)
T 3nja_A 9 LHTAESDAGIGSWVLHME----SGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPFDVEY 84 (125)
T ss_dssp --------CCEEEEEETT----TTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHhCCeeEEEEEcC----CCcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHHHHHHHHHhcCCCceEEE
Confidence 444443 67777666544 568899999999999999998872 23333456677777777888888775433222
Q ss_pred eEEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003075 811 MCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 811 vRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
--..+.|+.++++-... -+.|++|...|...++.+
T Consensus 85 ~~~~~~g~~~~~~~~~~-~~~~~~g~~~~~~g~~~D 119 (125)
T 3nja_A 85 RIVRPDGQVRELLERNH-IQRQASGQVDHLWGTVID 119 (125)
T ss_dssp EEECTTSCEEEEEEEEE-EEECTTSCEEEEEEEEEE
T ss_pred EEECCCCCEEEEEEeeE-EEECCCCCEEEEEEEEEe
Confidence 22467788888765433 567889998887776654
No 121
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=95.72 E-value=0.046 Score=47.45 Aligned_cols=99 Identities=10% Similarity=0.078 Sum_probs=64.8
Q ss_pred cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhc-cccCCCeeEEcCCC
Q 003075 739 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQG-FAYLPGGMCVSSMG 817 (850)
Q Consensus 739 ~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG-~~~~y~GvRiss~G 817 (850)
+.+++|+.++.+ =.+.|.|+++.++|+|+-+|+.+.+..--..|.++......+.++.+.+ -...+.---+.+.|
T Consensus 11 ~~~~~i~~~d~~----g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~~~dG 86 (121)
T 2kdk_A 11 KPTEFITRFAVN----GKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAVLQSKEKILTDSYKFRAKDG 86 (121)
T ss_dssp CSSEEEEEECTT----SBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHHHHHHHHHHTSSSCEEEEEEEEECSSS
T ss_pred CCccEEEEECCC----eeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEcCC
Confidence 467777776654 5899999999999999999999987654445666666666677666643 21111111257899
Q ss_pred CeEEEcceEEeEeecCCC-CeeEEEE
Q 003075 818 RAVSYEQAVAWKVLDDDD-SNHCLAF 842 (850)
Q Consensus 818 rrf~i~~a~vW~l~d~~g-~~~gqAa 842 (850)
+.++++- .+--+.|++| ...+...
T Consensus 87 ~~~~~~~-~~~~~~d~~~~~~~~~v~ 111 (121)
T 2kdk_A 87 SFVTLKS-QWFSFTNPDTKELEYIVS 111 (121)
T ss_dssp CEEEEEE-EEEEEECCSSSCEEEEEE
T ss_pred CEEEEEE-EEEEEECCCCCeeeEEEE
Confidence 9988853 3334567654 4444333
No 122
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=95.59 E-value=0.044 Score=46.64 Aligned_cols=110 Identities=14% Similarity=0.068 Sum_probs=74.8
Q ss_pred HHHHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhccccc--ccCChhcHHHHHHHHHHHHHhccccC
Q 003075 731 DALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLD--KILDEAGRKILCTEFAKIMQQGFAYL 807 (850)
Q Consensus 731 ~~~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr--~sae~~~r~er~~lL~~v~~qG~~~~ 807 (850)
++.++.+.. .|.+|...+. +-.++|.|.++.++|+++-+++.+.+.. .-..|.+++.-.+.+.++.+.|-...
T Consensus 3 ~~~~~~l~~~~~~~i~~~d~----~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~ 78 (118)
T 3icy_A 3 AEELQALVDNIPAAIYHLDV----SGQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNAYSKLREAKHSLT 78 (118)
T ss_dssp HHHHHHHHTTCCCCCEEECT----TSCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHHHHHHHHSCCEEE
T ss_pred HHHHHHHHhcCCceEEEEEc----CCCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHHHHHHHhcCCCce
Confidence 455666765 6666655544 4678999999999999999998776542 23467777777777777777765433
Q ss_pred CCeeEEcCCCCeEEEcceEEeEeecCCCCeeEEEEeec
Q 003075 808 PGGMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFM 845 (850)
Q Consensus 808 y~GvRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~ 845 (850)
..---+.+.|+..+++. ..=-+.|++|...|...++.
T Consensus 79 ~e~r~~~~~g~~~w~~~-~~~~~~~~~g~~~~~~g~~~ 115 (118)
T 3icy_A 79 LVYRIVTPEGKLHWIED-HMRSSFSDDGLFSGIDGILC 115 (118)
T ss_dssp EEEEEECTTCCEEEEEE-EEEEEECTTSCEEEEEEEEE
T ss_pred EEEEEECCCCCEEEEEE-EEEEEECCCCCEEEEEEEEE
Confidence 33223467888777754 33356789999887665553
No 123
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.57 E-value=0.034 Score=47.94 Aligned_cols=104 Identities=12% Similarity=0.085 Sum_probs=65.6
Q ss_pred HHHHh-cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeE
Q 003075 734 LKQLW-HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMC 812 (850)
Q Consensus 734 ~~~L~-~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 812 (850)
...++ +.|.+|+..+.+ =.+.|.|++|.++|+++.+++.+.+...-..+... ....+.++.+.|-.....-++
T Consensus 9 ~~~il~~~~~~i~~~D~~----g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 82 (115)
T 3b33_A 9 PSAILNNMVTATLILDDG----LAIRYANPAAELLFSQSAKRIVEQSLSQLIQHASL--DLALLTQPLQSGQSITDSDVT 82 (115)
T ss_dssp HHHHHHHCSSEEEEECTT----CBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEEEC--CTHHHHHHHHHCCCEEEEEEE
T ss_pred HHHHHhhcCceEEEECCC----CcEEEECHHHHHHhCCCHHHHhCCCHHHHhCccch--hhHHHHHHHHcCCcccCCceE
Confidence 33344 489999888765 47999999999999999999999876544333221 123455566555321111223
Q ss_pred EcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003075 813 VSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 813 iss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
+.+.|+.++++ ..+-.+.| +|. .|.-++|.+
T Consensus 83 ~~~~g~~~~~~-~~~~pi~~-~g~-~~~l~~~~D 113 (115)
T 3b33_A 83 FVVDGRPLMLE-VTVSPITW-QRQ-LMLLVEMRK 113 (115)
T ss_dssp EEETTEEEEEE-EEEEEEEE-TTE-EEEEEEEEE
T ss_pred EecCCCEEEEE-EEEEEeec-CCc-eEEEEEEEe
Confidence 32578877663 45556677 776 566666643
No 124
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=95.53 E-value=0.071 Score=45.76 Aligned_cols=99 Identities=14% Similarity=0.059 Sum_probs=69.3
Q ss_pred cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEEcCCCC
Q 003075 739 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGR 818 (850)
Q Consensus 739 ~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Gr 818 (850)
+.|++|+..+.+ =.++|+|.++.++|+++-+++.+.+..--..+..+......+.++...+.. .+.-....+.|+
T Consensus 7 ~~~~~i~~~d~~----g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~ 81 (126)
T 3mjq_A 7 TIEDMILIINRE----GRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILAELFAGKKE-SLPLSLEKKEGT 81 (126)
T ss_dssp GCSSEEEEEETT----SBEEEECTHHHHHHSCCHHHHHHSBHHHHHCTTCHHHHHHHHHHHHHTCCS-EEEEEEECTTSC
T ss_pred hCCceEEEEeCC----CcEEEEcHHHHHHHCCCHHHHcCCCHHHHcCchhHHHHHHHHHHHHhCCCc-eeEEEEEccCCC
Confidence 367888777654 689999999999999999999999877666677777777888888776655 223233467888
Q ss_pred eEEEcceEEeEeecCCCCeeEEEEeec
Q 003075 819 AVSYEQAVAWKVLDDDDSNHCLAFMFM 845 (850)
Q Consensus 819 rf~i~~a~vW~l~d~~g~~~gqAa~F~ 845 (850)
.++++- .+..+.+ ++ ..|...++.
T Consensus 82 ~~~~~~-~~~~~~~-~~-~~~~~~~~~ 105 (126)
T 3mjq_A 82 SIPAKA-RIWQGKW-HN-EPCLFAIIK 105 (126)
T ss_dssp EEEEEE-EEEEEES-SS-SEEEEEEEE
T ss_pred EEEEEE-EEEeeeE-CC-ceEEEEEEE
Confidence 888753 3333333 22 445444443
No 125
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=94.75 E-value=0.11 Score=45.37 Aligned_cols=85 Identities=15% Similarity=0.047 Sum_probs=50.3
Q ss_pred HHHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHh--cccccccCChhcHHHHHHHHHHHHHhccccCC
Q 003075 732 ALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQ--DIMLDKILDEAGRKILCTEFAKIMQQGFAYLP 808 (850)
Q Consensus 732 ~~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~--~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y 808 (850)
..++.++. .|++|+..+.. =.+.|.|+++.++|+|+-+|+. +.+..--.. ++......+.+....+ ...+
T Consensus 17 ~~~~~l~e~~~~~i~~~d~~----g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~ 89 (126)
T 3bwl_A 17 SRLEALFENSPDMIDVLDAD----GTICEVNQRFCAELGYDESEVLGRSIWEFDLMF--DAEDVQTQLSGFSVDE-RRKF 89 (126)
T ss_dssp HHHHHHHHHCSSEEEEECTT----CBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTC--CHHHHHHHHHTCCTTC-EEEE
T ss_pred HHHHHHHhhCCcEEEEEcCC----CCEEEEcHHHHHHhCCCHHHHhhCCCchhhccC--CHHHHHHHHHHHhcCC-Ccce
Confidence 34566665 88888876544 5799999999999999999994 443321122 2222222221111111 1112
Q ss_pred CeeEEcCCCCeEEEc
Q 003075 809 GGMCVSSMGRAVSYE 823 (850)
Q Consensus 809 ~GvRiss~Grrf~i~ 823 (850)
......+.|+.|+++
T Consensus 90 e~~~~~~dG~~~~~~ 104 (126)
T 3bwl_A 90 EGLYERRDGSTMSVE 104 (126)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred EEEEEeCCCCEEEEE
Confidence 233458899999886
No 126
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=94.61 E-value=0.96 Score=45.86 Aligned_cols=144 Identities=15% Similarity=0.149 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCccccccCCCcceEEEEecCCCCCCCCCCccCCCCCCceeEEEeeecccccCChHHHH
Q 003075 397 LRTFSQRLSRGFNDAINGFLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLV 476 (850)
Q Consensus 397 l~~LaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~lf 476 (850)
+.+.+...+..|.... ..+|..... .++|+|..+...+ . ++-+. ++..-+ ++||+.||
T Consensus 26 ~~~~~~e~l~~~~~~~----~~~W~~~~~--~~gv~vy~~~~~~-----~--------~~~~~--k~~~~v-~~~~~~v~ 83 (224)
T 1jss_A 26 ISTKLQNTLIQYHSIE----EDEWRVAKK--AKDVTVWRKPSEE-----F--------NGYLY--KAQGVM-DDVVNNVI 83 (224)
T ss_dssp HHHHHHHHHHHHTTSC----GGGCEEEEE--ETTEEEEEEECSS-----S--------SSEEE--EEEEEE-SSCHHHHH
T ss_pred HHHHHHHHHHHHhhhC----CCCCEEEEE--CCCEEEEEEeccC-----C--------CceEE--EEEEEE-eCCHHHHH
Confidence 4444444444443322 568986643 3789999885531 1 23233 555566 89999999
Q ss_pred HHHhh--hhcccccccccchhhhhhccCCCCCCCCCCCCCCCcceEeeccccCCCCceEEEEEecCCCCCccccccccce
Q 003075 477 RFLRE--HRSEWADYGVDAYSAACLKASPYAVPCARPGGFPSSHVILPLAHTVEHEEFLEVVRLEGHAFSPEDVALARDM 554 (850)
Q Consensus 477 ~FLRd--~R~eWd~~~~d~~s~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~s~~~ 554 (850)
++|.| .|.+||.. +. + .+++-.| +....|--....... -..+-+||.
T Consensus 84 ~~l~d~~~r~~Wd~~----~~-----~---------------~~vle~i----d~~~~I~y~~~~~~~---~~~v~~RDf 132 (224)
T 1jss_A 84 DHIRPGPWRLDWDRL----MT-----S---------------LDVLEHF----EENCCVMRYTTAGQL---LNIISPREF 132 (224)
T ss_dssp HHHSSSTTHHHHCSS----EE-----E---------------EEEEEEC----STTEEEEEEEECCBT---TTTBCCEEE
T ss_pred HHHhCcccccccccc----ee-----e---------------EEEEEEc----CCCeEEEEEEccccc---CCCCCCCeE
Confidence 99998 89999973 11 1 2344344 222233222222110 011456788
Q ss_pred EeEeeccCcCCCCCCceeEEEeecccCCC--CCC--CccccCceEEec
Q 003075 555 YLLQLCSGIDENTVGACAQLVFAPIDESF--ADD--APLLASGFRVIP 598 (850)
Q Consensus 555 liLQe~~~~De~~~Gs~s~vVyAPvD~~d--s~~--v~LLPSGF~I~P 598 (850)
.++...- .+ +.+.+++.-.||-++ +.+ +.++++||.|.|
T Consensus 133 v~~r~~~-~~----~~~~vi~~~Sv~hp~~~~g~VR~~~~~~g~~i~p 175 (224)
T 1jss_A 133 VDFSYTV-GY----EEGLLSCGVSVEWSETRPEFVRGYNHPCGWFCVP 175 (224)
T ss_dssp EEEEEEE-EE----TTEEEEEEEECCCCCCCTTSEECEECSEEEEEEE
T ss_pred EEEEEEE-Ec----CCeEEEEEeeeecCCCCCCCEEEEecccEEEEEE
Confidence 8877642 22 122455666676443 233 457888888888
No 127
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=94.39 E-value=1.4 Score=45.30 Aligned_cols=174 Identities=22% Similarity=0.324 Sum_probs=96.7
Q ss_pred CCCCccccccCCCcceEEEEecCCCCCCCCCCccCCCCCCceeEEEeeecccccCChHHH-HHHHhhhhcccccccccch
Q 003075 416 LDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALL-VRFLREHRSEWADYGVDAY 494 (850)
Q Consensus 416 ~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~l-f~FLRd~R~eWd~~~~d~~ 494 (850)
..++|..... .++|+|..++..+ + . .+-.-++..-+ +.+|+.+ +++|.| |.+||.. +
T Consensus 48 ~~~gW~~~~~--~~gi~V~~k~~~~---~-~----------~~~~~K~~~~v-~~~~~~v~~~ll~d-r~~Wd~~----~ 105 (237)
T 2pso_A 48 KFKGWVTCSS--TDNTDLAFKKVGD---G-N----------PLKLWKASVEV-EAPPSVVLNRVLRE-RHLWDED----F 105 (237)
T ss_dssp HCCSCEEECC--SSSCEEEEECCCS---S-C----------CCCEEEEEEEE-SSCHHHHHHHHHHC-GGGTCTT----B
T ss_pred CCCCCEEEec--CCCeEEEEEEcCC---C-C----------CcEEEEEEEEE-cCChHHHHHHHHhh-hhhHHhh----h
Confidence 4568987743 5789999988531 2 1 12234556667 5666555 578888 9999973 1
Q ss_pred hhhhhccCCCCCCCCCCCCCCCcceEeeccccCCCCceEEEEEecCCCCCccccccccceEeEeeccCcCCCCCCceeEE
Q 003075 495 SAACLKASPYAVPCARPGGFPSSHVILPLAHTVEHEEFLEVVRLEGHAFSPEDVALARDMYLLQLCSGIDENTVGACAQL 574 (850)
Q Consensus 495 s~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~s~~~liLQe~~~~De~~~Gs~s~v 574 (850)
. + .+++-.|. ..+.|--....... .+-+||..++.-. ..|. ..|+ -.+
T Consensus 106 ~-----~---------------~~vle~id----~~~~I~y~~~~~p~-----p~~~RDfv~~r~~-r~~~-~~g~-~vi 153 (237)
T 2pso_A 106 V-----Q---------------WKVVETLD----RQTEIYQYVLNSMA-----PHPSRDFVVLRTW-KTDL-PKGM-CTL 153 (237)
T ss_dssp C-----C---------------CEEEEEEE----TTEEEEEEEECCSS-----SCCCEEEEEEEEE-ESCC-GGGC-EEE
T ss_pred c-----e---------------EEEEEEcC----CCcEEEEEEecCCC-----CcCCeEEEEEEEE-EEEC-CCCE-EEE
Confidence 1 1 34454442 12222222222221 2456788777763 2331 2253 223
Q ss_pred EeecccCCC-C--CC--CccccCceEEecCCccccccCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCceEEEEe
Q 003075 575 VFAPIDESF-A--DD--APLLASGFRVIPLDSKAAMQDGPAASRTLDLASALEVGSGGARPAGGTELSNYNSRSVLTIAF 649 (850)
Q Consensus 575 VyAPvD~~d-s--~~--v~LLPSGF~I~P~~~~~~~~Dg~~~~~tldlas~le~~~~~~~~~~~~~~~~~~~gSlLTvaF 649 (850)
+...|+-++ | .+ +..+++||.|-|++ +++|.+|.-+
T Consensus 154 ~~~Sv~h~~~P~~g~VR~~~~~~g~~i~P~~---------------------------------------~~~t~vt~~~ 194 (237)
T 2pso_A 154 VSLSVEHEEAQLLGGVRAVVMDSQYLIEPCG---------------------------------------SGKSRLTHIC 194 (237)
T ss_dssp EEEECCCTTCCCCSSEECCEEEEEEEEEECS---------------------------------------TTCEEEEEEE
T ss_pred EEEcccCCCCCCCCcEEEEEeccEEEEEECC---------------------------------------CCCEEEEEEE
Confidence 344455431 1 22 45678888888820 1357788777
Q ss_pred eccccccccchHHHHHhhhHhHHHHHHHHHHHHhCC
Q 003075 650 QFTFENHMRDNVAAMARQYVRSVVGSVQRVAMAISP 685 (850)
Q Consensus 650 Q~l~~~~~~~sVa~~~~~~v~~v~~tvqri~~AL~~ 685 (850)
|+=........+ ++-+......++.+++.++..
T Consensus 195 ~~Dp~G~iP~~l---n~~~~~~~~~~l~~LR~~~~~ 227 (237)
T 2pso_A 195 RIDLKGHSPEWY---SKGFGHLCAAEVARIRNSFQP 227 (237)
T ss_dssp EECCSSSCTTTT---TTHHHHHHHHHHHHHHHTTSC
T ss_pred EeCCCCCchHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence 776655433333 334455566789999999853
No 128
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=94.25 E-value=0.16 Score=45.80 Aligned_cols=98 Identities=11% Similarity=-0.044 Sum_probs=64.0
Q ss_pred HHHHh-cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhcccc----CC
Q 003075 734 LKQLW-HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAY----LP 808 (850)
Q Consensus 734 ~~~L~-~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~----~y 808 (850)
++.++ +.|.+|+..+.. =.++|.|.++.++|+++.+++.+.+...-..+..+......+..+...+... ..
T Consensus 42 ~~~~l~~~~~~i~~~d~~----g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (167)
T 1v9y_A 42 FFPALEQNMMGAVLINEN----DEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSR 117 (167)
T ss_dssp HHHHHHTCSSEEEEECTT----SBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHHC----------C
T ss_pred HHHHHHhCCCCEEEECCC----CcEEEECHHHHHHhCCCHHHHcCCChhhccCccccchHHHHHHHHhhcCCCcccccce
Confidence 45554 478888776644 5899999999999999999999998877777666655556666666655431 22
Q ss_pred CeeEEcCCCCeEEEcceEEeEeecCCCCe
Q 003075 809 GGMCVSSMGRAVSYEQAVAWKVLDDDDSN 837 (850)
Q Consensus 809 ~GvRiss~Grrf~i~~a~vW~l~d~~g~~ 837 (850)
.-....+.|+.++++-.. -.+ +++|..
T Consensus 118 ~~~~~~~~g~~~~~~~~~-~~~-~~~g~~ 144 (167)
T 1v9y_A 118 ELQLEKKDGSKIWTRFAL-SKV-SAEGKV 144 (167)
T ss_dssp EEEEECTTSCEEEEEEEE-EEE-EETTEE
T ss_pred EEEEEcCCCcEEEEEEEE-EEE-ecCCCE
Confidence 223356778887775332 233 555654
No 129
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=94.05 E-value=0.075 Score=49.21 Aligned_cols=87 Identities=16% Similarity=0.180 Sum_probs=55.6
Q ss_pred HHHHh-cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhcc------cc
Q 003075 734 LKQLW-HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGF------AY 806 (850)
Q Consensus 734 ~~~L~-~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~------~~ 806 (850)
++.++ ..+++|+..+.+ =.++|+|.||.+||+|+-+++++.+...-..+..++.-..++.+..+.|- ..
T Consensus 9 l~~i~~~~~d~i~~~D~~----g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (129)
T 3mfx_A 9 IELFIQHLTEAMILVNAN----GFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQARYDNLLSHDVQLGTNCGQPVQH 84 (129)
T ss_dssp HHHHHTTCSSEEEEEETT----SBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCGGGGCTTC----------CCSCE
T ss_pred HHHHHhcCCceEEEECCC----CEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChHhHHHHHHHHHHHHhcCcccccccCC
Confidence 44444 488999887765 58999999999999999999999987655555554433333333322211 00
Q ss_pred C-CCeeEEcCCCCeEEEcc
Q 003075 807 L-PGGMCVSSMGRAVSYEQ 824 (850)
Q Consensus 807 ~-y~GvRiss~Grrf~i~~ 824 (850)
. ..-....+.|+.|+++-
T Consensus 85 ~~~E~~~~rkdG~~~~vel 103 (129)
T 3mfx_A 85 PAQETTLICASGKAKDVEL 103 (129)
T ss_dssp EEEEEEEECTTSCEEEEEE
T ss_pred CceEEEEEcCCCCEEEEEE
Confidence 0 11123467999999864
No 130
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=93.96 E-value=0.24 Score=42.70 Aligned_cols=90 Identities=12% Similarity=0.059 Sum_probs=62.7
Q ss_pred CCeeEcccHHHHHhhccCHHHHhcccc-cccCChhcHHHHHHHHHHHHHhccccCCCeeE-EcCCCCeEEEcceEEeEee
Q 003075 754 SPVFTFANQAGLDMLETTLVALQDIML-DKILDEAGRKILCTEFAKIMQQGFAYLPGGMC-VSSMGRAVSYEQAVAWKVL 831 (850)
Q Consensus 754 dP~F~YaN~aAL~l~e~~w~el~~lps-r~sae~~~r~er~~lL~~v~~qG~~~~y~GvR-iss~Grrf~i~~a~vW~l~ 831 (850)
+-.|.|.|.+..++|+|+-+++.+... ..-..|.+|+.-.+.+.++.+.|-.... =.| +.+.|+..+++- ..--+.
T Consensus 13 ~~~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~-e~r~~~~dG~~~w~~~-~~~~~~ 90 (115)
T 3h9w_A 13 TMAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFCVKQSECGVDHEA-DYRALHRDGHYVWIRD-VVHVVR 90 (115)
T ss_dssp TTEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHHHHHHHTTCCEEE-EEEEECTTSCEEEEEE-EEEEEE
T ss_pred CCcEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHHHHHHHhcCCcccE-EEEEEcCCCCEEEEEE-EEEEEE
Confidence 457999999999999999999988211 2234677777777777888777752221 123 367888888754 444457
Q ss_pred cCCCCeeEEEEeec
Q 003075 832 DDDDSNHCLAFMFM 845 (850)
Q Consensus 832 d~~g~~~gqAa~F~ 845 (850)
|++|...+...+..
T Consensus 91 d~~G~~~~~~G~~~ 104 (115)
T 3h9w_A 91 DDSGEVEALIGFMF 104 (115)
T ss_dssp CTTSCEEEEEEEEE
T ss_pred CCCCCEEEEEEEEe
Confidence 99999877665543
No 131
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=93.94 E-value=1.9 Score=43.45 Aligned_cols=192 Identities=13% Similarity=0.152 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCccccccCCCcceEEEEecCCCCCCCCCCccCCCCCCceeEEEeeecccccCChHHHH
Q 003075 397 LRTFSQRLSRGFNDAINGFLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLV 476 (850)
Q Consensus 397 l~~LaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~lf 476 (850)
-.++++.-+..+..-+. ..++|.... ...++|.|..++.. + .|.+ -++...+ ++||+.||
T Consensus 12 y~~~~~~~~~~~l~~~~--~~~gW~~~~-~~~~gv~vy~~~~~----~----------~g~~--~k~~~~v-~~~~~~v~ 71 (221)
T 3p0l_A 12 YLQQGEEAMQKALGILS--NQEGWKKES-QQDNGDKVMSKVVP----D----------VGKV--FRLEVVV-DQPMERLY 71 (221)
T ss_dssp HHHHHHHHHHHHHHHHH--SCTTCEEEE-ECTTSCEEEEEECS----S----------SCEE--EEEEEEE-SSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--CCCCCeEee-ecCCCcEEEEEEcC----C----------CceE--EEEEEEE-cCCHHHHH
Confidence 34455555555544443 357898773 12467788888742 1 1323 3556667 89999999
Q ss_pred HHHh-h--hhcccccccccchhhhhhccCCCCCCCCCCCCCCCcceEeeccccCCCCceEEEEEecCCCCCccccccccc
Q 003075 477 RFLR-E--HRSEWADYGVDAYSAACLKASPYAVPCARPGGFPSSHVILPLAHTVEHEEFLEVVRLEGHAFSPEDVALARD 553 (850)
Q Consensus 477 ~FLR-d--~R~eWd~~~~d~~s~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~s~~ 553 (850)
++|. | .|.+||.. +. ..+++-.+.. +.. |+..... +.--..+-+||
T Consensus 72 ~~l~~d~~~r~~Wd~~----~~--------------------~~~vle~~~~----~t~--I~y~~~~-~~~~~~v~~RD 120 (221)
T 3p0l_A 72 EELVERMEAMGEWNPN----VK--------------------EIKVLQKIGK----DTF--ITHELAA-EAAGNLVGPRD 120 (221)
T ss_dssp HHHTTTGGGTTTSCTT----CS--------------------EEEEEEECSS----SEE--EEEEEEC-C---CCSCCEE
T ss_pred HHHHhccchhhhcCcc----hh--------------------eEEEEEecCC----CeE--EEEEeec-cccCCccCCce
Confidence 9995 4 89999973 11 1344444422 222 3332100 00001244678
Q ss_pred eEeEeeccCcCCCCCCceeEEEe-ecccCC----CCCC--CccccCceEEecCCccccccCCCCcccccccccccccCCC
Q 003075 554 MYLLQLCSGIDENTVGACAQLVF-APIDES----FADD--APLLASGFRVIPLDSKAAMQDGPAASRTLDLASALEVGSG 626 (850)
Q Consensus 554 ~liLQe~~~~De~~~Gs~s~vVy-APvD~~----ds~~--v~LLPSGF~I~P~~~~~~~~Dg~~~~~tldlas~le~~~~ 626 (850)
..+|.-.. .+ .| .+++. -.|+-+ .+.+ +.++++||.|-|++. +
T Consensus 121 fv~~r~~~-~~---~~--~~vi~~~Sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~----------------------~-- 170 (221)
T 3p0l_A 121 FVSVRCAK-RR---GS--TCVLAGMATDFGNMPEQKGVIRAEHGPTCMVLHPLAG----------------------S-- 170 (221)
T ss_dssp EEEEEEEE-EC---SS--CEEECCEECCCTTSCCCTTSEECEECSCEEEEEEETT----------------------E--
T ss_pred EEEEEEEE-Ec---CC--eEEEEEEeccCCCCCCCCCeEEEeccceEEEEEECCC----------------------C--
Confidence 88877642 33 13 34443 445533 1333 357899999999210 0
Q ss_pred CCCCCCCCCCCCCCCCceEEEEeeccccccccchHHHHHhhhHhHHHHHHHHHHHHhC
Q 003075 627 GARPAGGTELSNYNSRSVLTIAFQFTFENHMRDNVAAMARQYVRSVVGSVQRVAMAIS 684 (850)
Q Consensus 627 ~~~~~~~~~~~~~~~gSlLTvaFQ~l~~~~~~~sVa~~~~~~v~~v~~tvqri~~AL~ 684 (850)
..+|.+|.-+|+=.......++... -...++..+++.++.++.
T Consensus 171 -------------~~~t~vt~~~~~Dp~G~iP~~lvn~--~~~~~~~~~~~~Lr~~~~ 213 (221)
T 3p0l_A 171 -------------PSKTKLTWLLSIDLKGWLPKSIINQ--VLSQTQVDFANHLRKRLE 213 (221)
T ss_dssp -------------EEEEEEEEEECEECCSSCCHHHHHH--HHHHHHHHHHHHHHHHTC
T ss_pred -------------CCcEEEEEEEEecCCCCCCHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence 1257888887776665433333221 113556678888888886
No 132
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=93.88 E-value=0.41 Score=42.33 Aligned_cols=96 Identities=16% Similarity=0.042 Sum_probs=62.7
Q ss_pred HHhcCCCeEeecCCCCCCCCeeEcccHHHHHhhc------------cCHHHHhcccccccCChhcHHHHHHHHHHHHHhc
Q 003075 736 QLWHHSDAIMCCSLKTNASPVFTFANQAGLDMLE------------TTLVALQDIMLDKILDEAGRKILCTEFAKIMQQG 803 (850)
Q Consensus 736 ~L~~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e------------~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG 803 (850)
.|-+.|++|+..+.+ =..+|.|+||.+||+ ++-+++++.+...-..... ....++.. .
T Consensus 10 il~~~~~gviv~D~~----g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~~~~~--~~~~~~~~----~ 79 (121)
T 4hi4_A 10 ALDNVSANVMIADND----LNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKNPA--HQRHLLAN----L 79 (121)
T ss_dssp HHTTSSSEEEEEETT----CBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGCSSHH--HHHHHHHH----C
T ss_pred HHhcCCccEEEEcCC----CeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhcCCHH--HHHHHHhC----c
Confidence 445579999998865 589999999999997 6778888877654443221 11222222 2
Q ss_pred cccCCCeeEEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003075 804 FAYLPGGMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 804 ~~~~y~GvRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
- .+....+...|+.|. ..+--+.|++|...|.-++|.+
T Consensus 80 ~--~~~~~~~~~~~~~~~---~~~~pi~~~~g~~~g~v~~~~D 117 (121)
T 4hi4_A 80 T--GVHKAELNLGGRRFS---LDVVPVFNDANARLGSAVQWTD 117 (121)
T ss_dssp S--SCEEEEEEETTEEEE---EEEEEEECTTSCEEEEEEEEEE
T ss_pred C--CCcEEEEEECCEEEE---EEEEEEECCCCCEEEEEEEEEE
Confidence 1 122234444666654 3555677899999999888865
No 133
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=93.84 E-value=0.031 Score=48.53 Aligned_cols=82 Identities=16% Similarity=0.114 Sum_probs=50.5
Q ss_pred CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHH-Hhcccc---CCCeeEEcC
Q 003075 740 HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIM-QQGFAY---LPGGMCVSS 815 (850)
Q Consensus 740 ~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~-~qG~~~---~y~GvRiss 815 (850)
.+++|+..+.+ +=.+.|+|+||.+||+|+-+|+.+.+...-..+..++....+..+.. ..|... .+.-....+
T Consensus 7 ~~~~i~~~d~~---~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (114)
T 1ll8_A 7 FNKAIFTVDAK---TTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDVVEALSEEHMEADGHAAVVFGTVVDIISR 83 (114)
T ss_dssp TTCEEEEEETT---TCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHHHHHTTSSTTSSSSCSSCCCSSSEEECCT
T ss_pred CCceEEEEECC---CCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCcchhHHHHHHHHHhhccCCcceeccCcEEEEEec
Confidence 34577765532 25799999999999999999999998765555444333333222111 122211 111123578
Q ss_pred CCCeEEEcc
Q 003075 816 MGRAVSYEQ 824 (850)
Q Consensus 816 ~Grrf~i~~ 824 (850)
.|+.|+++-
T Consensus 84 dG~~~~v~~ 92 (114)
T 1ll8_A 84 SGEKIPVSV 92 (114)
T ss_dssp TCCCEEEEC
T ss_pred CCCEEEEEE
Confidence 999998864
No 134
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=93.61 E-value=0.72 Score=36.41 Aligned_cols=92 Identities=8% Similarity=-0.063 Sum_probs=54.5
Q ss_pred CCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEE-cCCCCe
Q 003075 741 SDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCV-SSMGRA 819 (850)
Q Consensus 741 ~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRi-ss~Grr 819 (850)
|.+|+..+.+ =.++|.|+++.++|+++-+++.+.+...- +.. .+....+.++.+.|... . ++. ...++
T Consensus 2 ~~~i~~~d~~----g~i~~~N~~~~~l~g~~~~~~~g~~~~~~--~~~-~~~~~~~~~~~~~~~~~--~-~~~~~~~~~- 70 (96)
T 3a0s_A 2 ETAIITLSKD----GRITEWNKKAEQLFGLKKENVLGRRLKDL--PDF-EEIGSVAESVFENKEPV--F-LNFYKFGER- 70 (96)
T ss_dssp CCEEEEEETT----SBEEEECHHHHHHHCCCHHHHTTSBGGGS--TTC-HHHHHHHHHHHHHTCCE--E-EEEEEETTE-
T ss_pred CceEEEEcCC----CCEeehhHHHHHHhCCCHHHhcCCCHHHC--cch-HHHHHHHHHHhccCCeE--E-EEEEcCCcE-
Confidence 4556655543 47899999999999999999999876554 222 22333445555544322 1 222 22333
Q ss_pred EEEcceEEeEeecCCCC-eeEEEEeec
Q 003075 820 VSYEQAVAWKVLDDDDS-NHCLAFMFM 845 (850)
Q Consensus 820 f~i~~a~vW~l~d~~g~-~~gqAa~F~ 845 (850)
++ ...+--+.|++|. ..|...+|.
T Consensus 71 -~~-~~~~~p~~~~~~~~~~g~v~~~~ 95 (96)
T 3a0s_A 71 -YF-NIRFSPFRNAKTQLLEGVIITID 95 (96)
T ss_dssp -EE-EEEEEEEECTTTCCEEEEEEEEE
T ss_pred -EE-EEEEEEeEcCCCCeeeEEEEEec
Confidence 33 2344556677654 567776664
No 135
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=93.47 E-value=2.5 Score=41.22 Aligned_cols=54 Identities=24% Similarity=0.451 Sum_probs=40.3
Q ss_pred CCccccccCCCcceEEEEecCCCCCCCCCCccCCCCCCceeEEEeeecccccCChHHHHHHHhh--hhcccccc
Q 003075 418 DGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HRSEWADY 489 (850)
Q Consensus 418 ~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~lf~FLRd--~R~eWd~~ 489 (850)
++|..... .++|+|..+... + . ++..-++...+ +.||+.+|++|.| .|.+||..
T Consensus 3 ~~W~~~~~--~~gv~v~~~~~~----~-~----------~~~~~k~~~~v-~~s~~~v~~~l~D~~~~~~W~~~ 58 (189)
T 3qsz_A 3 DGWSLAKD--AEGIKVYVRNVE----G-S----------PLREFRGEVRL-KAAADDVVKVLRDANAFRQWMPD 58 (189)
T ss_dssp CCCEEEEE--ETTEEEEEECCT----T-C----------SSCEEEEEEEE-SSCHHHHHHHHHCGGGGGGTSTT
T ss_pred CCCEEEEc--CCCEEEEEEeCC----C-C----------CeEEEEEEEEE-ECCHHHHHHHHHhHHHhhhHHHh
Confidence 57987642 468999988764 1 1 22345666777 7999999999997 89999973
No 136
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=93.12 E-value=1.1 Score=47.21 Aligned_cols=149 Identities=15% Similarity=0.206 Sum_probs=88.4
Q ss_pred CCCCchHHHHHHHHHHHHHhhhccCCCCCCccccccCCCcceEEEEecCCCCCCCCCCccCCCCCCceeEEEeeeccccc
Q 003075 390 GGRQPAVLRTFSQRLSRGFNDAINGFLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQN 469 (850)
Q Consensus 390 ~Gr~~~sl~~LaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~p 469 (850)
+-+. +=+.|+.-.+.+...-. ..++|..... .++|+|..+.. + +.++-++.+-+ +
T Consensus 43 w~~~--~~~~l~~~n~~al~~l~---~~~gW~~~~~--~~gv~Vy~~~~-----~------------~~l~~k~~~~v-~ 97 (258)
T 3fo5_A 43 WDPS--NQVYLSYNNVSSLKMLV---AKDNWVLSSE--ISQVRLYTLED-----D------------KFLSFHMEMVV-H 97 (258)
T ss_dssp CCGG--GHHHHHHHHHHHHHHHH---TCSCCEEEEE--ETTEEEEEEEC-----S------------SCEEEEEEEEE-S
T ss_pred cCcc--cceecccCCHHHHHhhh---ccCCCEEEec--CCCeEEEEEEC-----C------------CceEEEEEEEE-e
Confidence 5554 77778776665554333 5689987643 46899987532 1 13555777788 7
Q ss_pred CChHHHHHHHhh--hhcccccccccchhhhhhccCCCCCCCCCCCCCCCcceEeeccccCCCCceEEEEEecCCCCCccc
Q 003075 470 VPPALLVRFLRE--HRSEWADYGVDAYSAACLKASPYAVPCARPGGFPSSHVILPLAHTVEHEEFLEVVRLEGHAFSPED 547 (850)
Q Consensus 470 vpp~~lf~FLRd--~R~eWd~~~~d~~s~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~ 547 (850)
+||+.||++|.| .|.+||.. + ++ .+++..|.. .++|- ++... ....
T Consensus 98 ~~~~~v~~~L~D~~~R~~WD~~----~-----~~---------------~~vle~id~----~~ivY--~~~~p--~~~~ 145 (258)
T 3fo5_A 98 VDAAQAFLLLSDLRQRPEWDKH----Y-----RS---------------VELVQQVDE----DDAIY--HVTSP--ALGG 145 (258)
T ss_dssp SCHHHHHHHHHCGGGGGGTCTT----C-----CE---------------EEEEEEEET----TEEEE--EEEEC--CCTT
T ss_pred CCHHHHHHHHhCchhHhHhhhh----c-----cE---------------EEEEEEcCC----CeEEE--EEecC--CccC
Confidence 999999999997 79999973 1 11 344444422 23444 33221 1112
Q ss_pred cccccceEeEeeccCcCCCCCCceeEEE-eecccCC----CCCC--CccccCceEEec
Q 003075 548 VALARDMYLLQLCSGIDENTVGACAQLV-FAPIDES----FADD--APLLASGFRVIP 598 (850)
Q Consensus 548 ~~~s~~~liLQe~~~~De~~~Gs~s~vV-yAPvD~~----ds~~--v~LLPSGF~I~P 598 (850)
.+-+||..+|.-. -.+ ...|. .+|| .-.|+-+ -+.+ +..+|+||.|.|
T Consensus 146 ~v~~RDFV~lr~~-r~~-~~~G~-~yvi~~~SV~hp~~Pp~~g~VR~~~~~sg~~I~P 200 (258)
T 3fo5_A 146 HTKPQDFVILASR-RKP-CDNGD-PYVIALRSVTLPTHRETPEYRRGETLCSGFCLWR 200 (258)
T ss_dssp CSSCEEEEEEEEE-ECC-SSTTC-CEEEEEEEEECTTSCCCTTSEECCCSSEEEEEEE
T ss_pred CCCCCEEEEEEEE-Eec-cCCCC-EEEEEEEeccCCCCCCCCCCEEEEEcCcEEEEEE
Confidence 3456777777653 222 13353 2443 3344432 2333 469999999999
No 137
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=93.06 E-value=2.4 Score=42.11 Aligned_cols=67 Identities=16% Similarity=0.293 Sum_probs=45.6
Q ss_pred HHHHhhhccC--CCCCCccccccCCCcceEEEEecCCCCCCCCCCccCCCCCCceeEEEeeecccccCChHHHHHHHhh-
Q 003075 405 SRGFNDAING--FLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE- 481 (850)
Q Consensus 405 ~~~F~~~v~~--s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~lf~FLRd- 481 (850)
.+.+|..+.. ....+|..... .++|+|..+... + . ++..-++...++++||+.||++|.|
T Consensus 13 f~~~~~~l~~~~~~~~~W~~~~~--~~~v~v~~~~~~----~-~----------~~~~~k~~~~i~~~~~~~v~~~l~d~ 75 (214)
T 1ln1_A 13 FWEACAELQQPALAGADWQLLVE--TSGISIYRLLDK----K-T----------GLYEYKVFGVLEDCSPTLLADIYMDS 75 (214)
T ss_dssp HHHTTHHHHSCCCTTTTCEEEEE--ETTEEEEEEEET----T-T----------TEEEEEEEEEETTSCHHHHHHHHHCH
T ss_pred HHHHHHHhccCCCCCCCcEEEEE--CCCeEEEEeccC----C-C----------CcEEEEEEEEECCCCHHHHHHHHcCH
Confidence 3444444433 24568988753 357999887653 1 1 2445566777844999999999997
Q ss_pred -hhccccc
Q 003075 482 -HRSEWAD 488 (850)
Q Consensus 482 -~R~eWd~ 488 (850)
.|.+||.
T Consensus 76 ~~r~~Wd~ 83 (214)
T 1ln1_A 76 DYRKQWDQ 83 (214)
T ss_dssp HHHHHHCT
T ss_pred HHHHHHHH
Confidence 7999997
No 138
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=92.20 E-value=0.26 Score=43.32 Aligned_cols=63 Identities=13% Similarity=0.129 Sum_probs=48.8
Q ss_pred cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccc
Q 003075 739 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFA 805 (850)
Q Consensus 739 ~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~ 805 (850)
..|++|+..+. +=.++|.|+++.++|+++.+++.+.+..--.++..+......+.++.+.|-.
T Consensus 20 ~~~~~i~~~D~----~g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (118)
T 3fg8_A 20 QGGLGFMALDE----DLRIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQGSYFDALCRKVLATGRE 82 (118)
T ss_dssp CTTCEEEEECT----TCBEEEECHHHHHHHTCCHHHHTTSBHHHHCGGGTTSHHHHHHHHHHHHCCC
T ss_pred hCCceEEEECC----CCeEEEECHHHHHHhCCCHHHHcCCcHHHHcCccchHHHHHHHHHHHHcCCc
Confidence 36888887664 4689999999999999999999999876655555555566677788777643
No 139
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=92.16 E-value=5.4 Score=40.23 Aligned_cols=128 Identities=13% Similarity=0.149 Sum_probs=71.5
Q ss_pred CCCccccccCCCcceEEEEecCCCCCCCCCCccCCCCCCceeEEEeeecccccCChHHHH-HHHhh--hhcccccccccc
Q 003075 417 DDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLV-RFLRE--HRSEWADYGVDA 493 (850)
Q Consensus 417 ~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~lf-~FLRd--~R~eWd~~~~d~ 493 (850)
.++|.... ...++++|..+... + .|.+. ++...+ ++||+.|| ++|.| .|.+||..
T Consensus 41 ~~~W~~~~-~~~~g~~vy~~~~~----~----------~g~~~--k~~~~v-~~~~~~v~~~~~~d~~~r~~Wd~~---- 98 (229)
T 1em2_A 41 EENWKFEK-NNEYGDTVYTIEVP----F----------HGKTF--ILKTFL-PCPAELVYQEVILQPERMVLWNKT---- 98 (229)
T ss_dssp GGGCEEEE-ECTTCCEEEEEEET----T----------TEEEE--EEEEEE-SSCHHHHHHHTTTCHHHHTTTCTT----
T ss_pred CCCCEEEE-ecCCCCEEEEEecC----C----------CCceE--EEEEEe-cCCHHHHHHHHHhCccchhhcccc----
Confidence 46898764 22357788776543 1 12233 444556 89999999 88876 89999973
Q ss_pred hhhhhhccCCCCCCCCCCCCCCCcceEeeccccCCCCceEEEEEecCCCCCccccccccceEeEeeccCcCCCCCCceeE
Q 003075 494 YSAACLKASPYAVPCARPGGFPSSHVILPLAHTVEHEEFLEVVRLEGHAFSPEDVALARDMYLLQLCSGIDENTVGACAQ 573 (850)
Q Consensus 494 ~s~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~s~~~liLQe~~~~De~~~Gs~s~ 573 (850)
+. + .+++-.|.. +..| +..+... .-...+-+||..++.-. ..++ + +-+
T Consensus 99 ~~-----~---------------~~vle~~~~----~t~I-~~~~~~p--~~~~~~~~RDfv~~r~~-~~~~---~-~~v 146 (229)
T 1em2_A 99 VT-----A---------------CQILQRVED----NTLI-SYDVSAG--AAGGVVSPRDFVNVRRI-ERRR---D-RYL 146 (229)
T ss_dssp EE-----E---------------EEEEEEETT----TEEE-EEEEECC--BTTTTBCCEEEEEEEEE-EECS---S-EEE
T ss_pred cc-----e---------------EEEEEecCC----CeEE-EEEEecC--cCCCCcCCCeeEEEEEE-EEcC---C-EEE
Confidence 11 1 344444421 2222 1112111 00112456788887764 2332 2 245
Q ss_pred EEeecccCCC----CCC--CccccCceEEec
Q 003075 574 LVFAPIDESF----ADD--APLLASGFRVIP 598 (850)
Q Consensus 574 vVyAPvD~~d----s~~--v~LLPSGF~I~P 598 (850)
++...|+-+. +.. +.++++||.|-|
T Consensus 147 i~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p 177 (229)
T 1em2_A 147 SSGIATSHSAKPPTHKYVRGENGPGGMIVLK 177 (229)
T ss_dssp EEEEECCCTTSCCCTTSEECEECSEEEEEEE
T ss_pred EEEecccCCCCCCCCCCEeeeecccEEEEEe
Confidence 6666776542 222 557899999999
No 140
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=91.44 E-value=1.3 Score=39.70 Aligned_cols=140 Identities=12% Similarity=0.091 Sum_probs=75.6
Q ss_pred eeeEEeeChhhHHHHhcCccchhhcCCcceeeeeccCCCccHHHHHHHhhcccccccccceeeEEeeccccCCCcEEEEE
Q 003075 217 ACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVCE 296 (850)
Q Consensus 217 ~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~~~G~waVvD 296 (850)
.+..|...+.++-+.|.|.+.|.+-+|.+.-+.+...+.+|. ...+.+-.+ +.+.-+..++... +++.-++..
T Consensus 6 ~~~~i~ap~~~V~~~l~d~~~~~~w~p~~~~~~~~~~~~~g~----~~~~~~~~~--g~~~~~~~~~~~~-~~~~~i~~~ 78 (147)
T 2d4r_A 6 AERYIPAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGART----RSRWVAVAM--GKKVRWLEEEEWD-DENLRNRFF 78 (147)
T ss_dssp EEEEESSCHHHHHHHHHCHHHHGGGCTTEEEEEEEEEETTEE----EEEEEEEET--TEEEEEEEEEEEE-TTTTEEEEE
T ss_pred EEEEeCCCHHHHHHHHhChhhhhhhcccccEEEEEEeCCCcc----EEEEEEEeC--CceEEEEEEEEEc-CCCcEEEEE
Confidence 455677788999999999999988888765444444332331 011111111 2233344555432 333222111
Q ss_pred eecCCCCCCCCCCCCCccccccccccceeeeecCCCceEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHHH-HH
Q 003075 297 RSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR-HI 375 (850)
Q Consensus 297 vSld~~~~~~~~~~~~~f~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~Rpl~~Sg~afgar~~~~aLr-~~ 375 (850)
.+++ + ...+. .-.-+.+.++| |+|+|.-+.+.....+..++.+++..-+-=+.+..+.+|+ .+
T Consensus 79 -~~~g----~----~~~~~------~~~~~~~~~~g-T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 142 (147)
T 2d4r_A 79 -SPEG----D----FDRYE------GTWVFLPEGEG-TRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEERV 142 (147)
T ss_dssp -EEEE----S----CSEEE------EEEEEEECSSS-EEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -eccC----C----hhheE------EEEEEEECCCC-cEEEEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1221 1 00111 12345777887 9999998888764334455565554333335666777773 66
Q ss_pred Hhhh
Q 003075 376 RQIA 379 (850)
Q Consensus 376 e~la 379 (850)
|+.+
T Consensus 143 e~~~ 146 (147)
T 2d4r_A 143 LAAS 146 (147)
T ss_dssp HHTT
T ss_pred Hhhc
Confidence 6543
No 141
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=89.75 E-value=0.63 Score=41.46 Aligned_cols=48 Identities=29% Similarity=0.335 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccC
Q 003075 73 RCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSA 127 (850)
Q Consensus 73 Rak~Krkq~~~~l~~~n~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~~~ 127 (850)
|+|.|+++.....+.. ...|.+||..|..++++|..|...|++-+...
T Consensus 29 rSR~krk~r~~e~~~r-------~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 29 KSRDKAKMRNLETQHK-------VLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 5555555555444444 44455555555555666666666666666543
No 142
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=89.55 E-value=1.7 Score=43.87 Aligned_cols=114 Identities=16% Similarity=0.133 Sum_probs=64.9
Q ss_pred HhhCCCCCCCCCCChHHHHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhh------------ccCHHHHhcccccc
Q 003075 716 IHTGGELLRADSLTGDALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDML------------ETTLVALQDIMLDK 782 (850)
Q Consensus 716 ~~~G~~L~~~~~~~~~~~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~------------e~~w~el~~lpsr~ 782 (850)
++....|++-. .....++.++. .+.+|+..+.+ =..+|+|+++.+|| +|+-+++++-+.+.
T Consensus 8 ~~~~~~~~~~~--~e~~~l~~iLd~~~~~vii~D~~----g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~ 81 (233)
T 3vol_A 8 HHHSSGLVPRG--SHMARIKSALDNVSANVMIADND----LNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDV 81 (233)
T ss_dssp ----------C--THHHHHHHHHTTSSSEEEEEETT----SBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGG
T ss_pred ccccccCCchH--HHHHHHHHHHhcCCCcEEEECCC----CcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHH
Confidence 34445666532 23334444444 68999887765 68999999999999 57777788777655
Q ss_pred cCChhcHHHHHHHHHHHHHhccccCCCeeEEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003075 783 ILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 783 sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
-...+. ....+++.. + + .+ ...+...|+.| ..++=-+.|++|.+.|.-..|.+
T Consensus 82 ~~~~~~--~~~~~~~~~-~-~---~~-~~~~~~~g~~~---~~~~~Pi~d~~G~~~g~v~~~~D 134 (233)
T 3vol_A 82 FHKNPA--HQRHLLANL-T-G---VH-KAELNLGGRRF---SLDVVPVFNDANERLGSAVQWTD 134 (233)
T ss_dssp GSSSHH--HHHHHHHTC-C-S---CE-EEEEEETTEEE---EEEEEEEECTTCCEEEEEEEEEE
T ss_pred HcCCHH--HHHHHHHhc-c-c---ce-eEEEEECCEEE---EEEEEEEECCCCCEEEEEEEEeh
Confidence 443221 111222221 1 1 12 23344456544 56677788999999998888865
No 143
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=89.06 E-value=1.5 Score=47.58 Aligned_cols=91 Identities=7% Similarity=-0.053 Sum_probs=67.9
Q ss_pred CCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEEcCCCCeEEEcceEEeEeec
Q 003075 753 ASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGRAVSYEQAVAWKVLD 832 (850)
Q Consensus 753 ~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf~i~~a~vW~l~d 832 (850)
.|=.|+|.|.++.++++|+-+||++.+..--.-|.++..-...+.++.+.|-.....==.+.+.|.-+|++- ..--+.|
T Consensus 259 ~dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~g~~~~~eyR~~~kdG~~vWv~~-~~~~v~~ 337 (361)
T 4f3l_A 259 LEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQT-HYYITYH 337 (361)
T ss_dssp TTSBEEEECTTSHHHHCCCHHHHTTSBGGGGBCHHHHHHHHHHHHHHHHHSEEECCCEEEECTTSEEEEEEE-EEEEEEC
T ss_pred CCceEEEECChhhhhhCcCHHHHcCCCHHHeECHHHHHHHHHHHHHHHhCCCcceEEEEEEecCCCEEEEEE-EEEEEEc
Confidence 367899999999999999999999998876677888887777788888888653322224578898888853 3334456
Q ss_pred C-CCCeeEEEEee
Q 003075 833 D-DDSNHCLAFMF 844 (850)
Q Consensus 833 ~-~g~~~gqAa~F 844 (850)
+ +|...+.-.+.
T Consensus 338 ~~~g~~~~iv~~~ 350 (361)
T 4f3l_A 338 QWNSRPEFIVCTH 350 (361)
T ss_dssp TTTCCEEEEEEEE
T ss_pred CCCCCeeEEEEEE
Confidence 5 68877665544
No 144
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=88.10 E-value=0.74 Score=38.68 Aligned_cols=97 Identities=8% Similarity=0.050 Sum_probs=59.6
Q ss_pred HHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhcc---CHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCC
Q 003075 733 LLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLET---TLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLP 808 (850)
Q Consensus 733 ~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~---~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y 808 (850)
.++.++. .|.+|+..+.+ =.++|.|++|.++|++ +-+++.+.+...-..+.. +.++.+.|-...
T Consensus 16 ~~~~il~~~~~~i~~~d~~----g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~~~- 83 (118)
T 2w0n_A 16 QRQAMLQSIKEGVVAVDDR----GEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVVD-------VSEVLRDGTPRR- 83 (118)
T ss_dssp HHHHHHHCCCCCCEEEBTT----TBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCSCTHH-------HHHHHHTTCCCC-
T ss_pred HHHHHHhhccccEEEECCC----CcEeehhHHHHHHhCCCccChhhhhccCcccccCchh-------HHHHhccCceec-
Confidence 3455554 78888777654 5789999999999997 788888877655444332 444555554321
Q ss_pred CeeEEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003075 809 GGMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 809 ~GvRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
...+...|+.|.+. +-.+.| +|...|...+|.+
T Consensus 84 -~~~~~~~~~~~~~~---~~p~~~-~g~~~g~v~~~~D 116 (118)
T 2w0n_A 84 -DEEITIKDRLLLIN---TVPVRS-NGVIIGAISTFRD 116 (118)
T ss_dssp -CCCEESSSCEECCC---EECCCC-SSCCCCEEECCCC
T ss_pred -cEEEEECCEEEEEe---eceeee-CCEEEEEEEEEEe
Confidence 22234456544332 223345 7777777666654
No 145
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=87.56 E-value=1.1 Score=39.03 Aligned_cols=46 Identities=30% Similarity=0.359 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003075 73 RCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (850)
Q Consensus 73 Rak~Krkq~~~~l~~~n~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~ 125 (850)
|+|.|+++....++. ....|..||..|..++.+|..|+..|++-|.
T Consensus 29 rSR~krk~r~~e~~~-------r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 29 KSRDKAKMRNLETQH-------KVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555444443 3445555666666666667777777776553
No 146
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.25 E-value=0.5 Score=40.40 Aligned_cols=43 Identities=21% Similarity=0.453 Sum_probs=38.7
Q ss_pred CHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhh
Q 003075 25 TPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQN 71 (850)
Q Consensus 25 T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQN 71 (850)
++.-.+.|+.+|+..+.+....-..|+.+. +|+..|||-||--
T Consensus 14 ~p~~~e~L~~Yy~~hk~L~EeDl~~L~~ks----kms~qqvkdwFa~ 56 (70)
T 2ys9_A 14 PPPDIQPLERYWAAHQQLRETDIPQLSQAS----RLSTQQVLDWFDS 56 (70)
T ss_dssp CCCCCHHHHHHHHHTCCCCTTHHHHHHHHT----TCCHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHhcccchhhHHHHHHHh----CCCHHHHHHHHHh
Confidence 344468999999999999999999999999 9999999999954
No 147
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=86.93 E-value=1.5 Score=36.59 Aligned_cols=45 Identities=29% Similarity=0.432 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003075 73 RCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQL 124 (850)
Q Consensus 73 Rak~Krkq~~~~l~~~n~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el 124 (850)
|+|.|++.....+.. +.+.|.++|..|..++..|+.|+..|++-+
T Consensus 16 R~R~KKk~~~~~le~-------~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 16 RYRQKKRAEQEALTG-------ECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666665555554 445555556666666666777777776654
No 148
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=86.41 E-value=1.2 Score=52.39 Aligned_cols=105 Identities=11% Similarity=0.046 Sum_probs=74.3
Q ss_pred HHhcCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEEcC
Q 003075 736 QLWHHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSS 815 (850)
Q Consensus 736 ~L~~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss 815 (850)
.+-.++..|+..+. +-.++|.|+++.+|++|+-+|..+.+......+..+.....+++.+ .+|-.....=.-..+
T Consensus 523 lle~a~~~i~~~D~----~grI~~~N~a~~~l~G~s~~e~~g~~~l~~~~~~~~~~~~~i~~~l-~~g~~~~~E~~~~~~ 597 (635)
T 4eho_A 523 QVHASMQPVLITDA----EGRILLMNDSFRDMLPAGSPSAVHLDDLAGFFVESNDFLRNVAELI-DHGRGWRGEVLLRGA 597 (635)
T ss_dssp HHHHCSSCCEEEET----TCCEEEECHHHHTTSCSSCCCCCSSGGGTTSSSSCTHHHHHHHHHH-HHCCCBCCCCEECCS
T ss_pred HHHhCCCcEEEECC----CCeEeeHHHHHHHHHCcChHHHcCcchhhccCCCCHHHHHHHHHHH-HcCCcEEEEEEEEcc
Confidence 34457777777654 4789999999999999999999999877666555555445555544 444332222223458
Q ss_pred CCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003075 816 MGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 816 ~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
.|+.|+++--. =-+.|++|++.|..++|.|
T Consensus 598 dG~~~~~~~~~-~pv~d~~G~v~g~v~i~~D 627 (635)
T 4eho_A 598 GNRPLPLAVRA-DPVTRTEDQSLGFVLIFSD 627 (635)
T ss_dssp SSSCEECCCCE-EEECSTTSSCCEEEECCCC
T ss_pred CCcEEEEEEEE-EEEECCCCCEEEEEEEEEe
Confidence 88888876432 3578999999999998866
No 149
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=85.89 E-value=1.9 Score=38.68 Aligned_cols=78 Identities=12% Similarity=0.055 Sum_probs=51.0
Q ss_pred cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeE-EcCCC
Q 003075 739 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMC-VSSMG 817 (850)
Q Consensus 739 ~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR-iss~G 817 (850)
+.+++|+..+. |=.|.|.|.++.++|+|+-+|+++.+..--..|.+++.-.+.+. +++-.. ..-.| +.+.|
T Consensus 7 ~~~d~i~v~d~----~G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~~~~~~---~~~~~~-~~e~r~~~kdG 78 (111)
T 2vlg_A 7 TKTDIHAVLAS----NGRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESYFY---NEHHLM-PCTFRFIKKDH 78 (111)
T ss_dssp --CCEEEEECT----TSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHH---CSCCSS-CEEEEEECTTS
T ss_pred cCCCEEEEEcC----CCeEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHHHHHHh---ccCCCc-cEEEEEEcCCC
Confidence 45777777664 35899999999999999999999987644445666655444432 222111 11234 36889
Q ss_pred CeEEEcc
Q 003075 818 RAVSYEQ 824 (850)
Q Consensus 818 rrf~i~~ 824 (850)
..++++-
T Consensus 79 ~~~wve~ 85 (111)
T 2vlg_A 79 TIVWVEA 85 (111)
T ss_dssp CEEEEEE
T ss_pred CEEEEEE
Confidence 9888864
No 150
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=84.38 E-value=2.5 Score=34.77 Aligned_cols=34 Identities=29% Similarity=0.273 Sum_probs=24.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003075 91 KLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQL 124 (850)
Q Consensus 91 ~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el 124 (850)
.|..+.+.+..+|..|..++..|+.|+..|++.+
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444556667777777777788888888888765
No 151
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=84.07 E-value=2.5 Score=35.16 Aligned_cols=45 Identities=27% Similarity=0.472 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003075 73 RCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQL 124 (850)
Q Consensus 73 Rak~Krkq~~~~l~~~n~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el 124 (850)
|+|.|++.....++... +.+..+|..|..++..|+.|...|+..|
T Consensus 16 rcR~rKk~~~~~Le~~v-------~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 16 KCRNRRRELTDTLQAET-------DQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555544444444 4455555555555566666666666554
No 152
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=82.81 E-value=1.4 Score=41.85 Aligned_cols=89 Identities=16% Similarity=0.203 Sum_probs=55.5
Q ss_pred HHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCee
Q 003075 733 LLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGM 811 (850)
Q Consensus 733 ~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~Gv 811 (850)
.++.++. .|++|+..+.+ =.+.|+|++|.++|+++-+++.+.|..--..+.. +.++.+.|-. ...+.
T Consensus 81 ~l~~il~~~~~gvi~~D~~----g~I~~~N~aa~~llg~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~-~~~~~ 148 (190)
T 2jhe_A 81 ALSALLEALPEPVLSVDMK----SKVDMANPASCQLFGQKLDRLRNHTAAQLINGFN-------FLRWLESEPQ-DSHNE 148 (190)
T ss_dssp HHHHHHHHCSSCEEEECTT----CBEEEECHHHHHHHTSCHHHHTTSBGGGTSTTCC-------HHHHHHTCCC-SCEEE
T ss_pred HHHHHHHhCCCcEEEEcCC----CCEEEEcHHHHHHhCCCHHHhcCccHHHHhCCCC-------HHHHHhcCCC-CCcce
Confidence 3455544 78888888765 6899999999999999999999988765554432 2234444421 11223
Q ss_pred EEcCCCCeEEEcceEEeEeecCCCC
Q 003075 812 CVSSMGRAVSYEQAVAWKVLDDDDS 836 (850)
Q Consensus 812 Riss~Grrf~i~~a~vW~l~d~~g~ 836 (850)
.+...|+.|.+. +-.+.+++|.
T Consensus 149 ~~~~~g~~~~~~---~~pi~~~~~~ 170 (190)
T 2jhe_A 149 HVVINGQNFLME---ITPVYLQDEN 170 (190)
T ss_dssp EEEETTEEEEEE---EEEETTTTEE
T ss_pred EEEECCeEEEEE---EEEEEecCCC
Confidence 334467766543 3334454554
No 153
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=82.02 E-value=5.5 Score=32.69 Aligned_cols=44 Identities=27% Similarity=0.323 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003075 73 RCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYE 116 (850)
Q Consensus 73 Rak~Krkq~~~~l~~~n~~l~aen~~l~ee~~~l~~e~~~L~~E 116 (850)
|+|.|++.....++.....+..+|..|..+...|..++.+|+..
T Consensus 15 k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 15 RSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777788888888889999999999999998888888753
No 154
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=78.38 E-value=9.9 Score=33.99 Aligned_cols=107 Identities=7% Similarity=-0.027 Sum_probs=67.2
Q ss_pred HHHHh-cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhccc--ccccCChhcHHHHHHHHHHHHHhccccCCCe
Q 003075 734 LKQLW-HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIM--LDKILDEAGRKILCTEFAKIMQQGFAYLPGG 810 (850)
Q Consensus 734 ~~~L~-~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lp--sr~sae~~~r~er~~lL~~v~~qG~~~~y~G 810 (850)
++.+. .++..+.-.+.. -..+|.|.+..++|+++-+++.+.. +....-|.+|+.-...+.++.+.|-.....
T Consensus 11 l~~~~~~~~~g~w~~d~~----~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~~~e- 85 (142)
T 3mr0_A 11 FQLAVSGASAGLWDWNPK----TGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVE- 85 (142)
T ss_dssp HHHHHHHTTCEEEEECTT----TCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHHHHHHHHHCCCEEEE-
T ss_pred HHHHHHhCCcEEEEEEcC----CCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHHHHHHHhCCCceEEE-
Confidence 44343 366666554444 3467999999999999998876532 223345777777777777777766332211
Q ss_pred eE-EcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003075 811 MC-VSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 846 (850)
Q Consensus 811 vR-iss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
.| +.+.|...+++. ..--+.|++|...+...++.+
T Consensus 86 ~r~~~~~G~~~w~~~-~~~~~~d~~g~~~~~~G~~~D 121 (142)
T 3mr0_A 86 YRVRTRSGDFRWIQS-RGQALWNSAGEPYRMVGWIMD 121 (142)
T ss_dssp EEEECTTSCEEEEEE-EEEEEECTTSCEEEEEEEEEE
T ss_pred EEEECCCCCEEEEEE-EEEEEECCCCCEEEEEEEEEc
Confidence 23 367788777743 333467999998776655543
No 155
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=76.77 E-value=3.2 Score=34.33 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=18.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003075 92 LSAMNKLLMEENDRLQKQVSHLVYENGYMRQQL 124 (850)
Q Consensus 92 l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el 124 (850)
|...-..+..+|..|..++..|+.|+..|++.|
T Consensus 27 Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 27 LEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666666667777777776654
No 156
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=76.46 E-value=10 Score=33.93 Aligned_cols=63 Identities=22% Similarity=0.188 Sum_probs=34.4
Q ss_pred CCChhhhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003075 59 NIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (850)
Q Consensus 59 gL~~rQVkvWFQNRRak~Krkq~~~~l~~~n~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~ 125 (850)
||+..+|.-+=|-||+ -|.+--...|+. +-..+...|..++..+..++++|+.||..++.|++
T Consensus 17 gls~eev~~lKq~RRt-lKNRgyAq~CR~---Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d 79 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRT-LKNRGYAQSCRY---KRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERD 79 (90)
T ss_dssp TCCHHHHHHHHHHHHH-HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh-hhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999998887764 233222222221 11223344555555555555666666655555544
No 157
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=74.84 E-value=5.7 Score=41.31 Aligned_cols=95 Identities=8% Similarity=-0.059 Sum_probs=57.6
Q ss_pred cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEEcC-CC
Q 003075 739 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSS-MG 817 (850)
Q Consensus 739 ~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss-~G 817 (850)
..|++|+..+.+ =.++|+|++|.++|+|+.+++.+.+...-.++ ++....+.++.+.|-.. -++.-. .+
T Consensus 16 ~~~~~i~~~d~~----g~i~~~N~a~~~l~G~~~~e~~G~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~ 85 (349)
T 3a0r_A 16 SLETAIITLSKD----GRITEWNKKAEQLFGLKKENVLGRRLKDLPDF---EEIGSVAESVFENKEPV---FLNFYKFGE 85 (349)
T ss_dssp GSSSEEEEEESS----SBCSCBCHHHHHHHSCCSTTTTTCBSTTSTTT---THHHHHHHHHHHHCCCC---EEECCCBTT
T ss_pred hhcCeEEEECCC----CCEEeeHHHHHHHhCCCHHHHcCcCHHHCcCh---hHHHHHHHHHHhcCCce---eecccccCc
Confidence 378888887654 58999999999999999999999877654322 22334455555544211 111111 23
Q ss_pred CeEEEcceEEeEeecCCCCe-eEEEEeecC
Q 003075 818 RAVSYEQAVAWKVLDDDDSN-HCLAFMFMN 846 (850)
Q Consensus 818 rrf~i~~a~vW~l~d~~g~~-~gqAa~F~~ 846 (850)
+.|.+ .+-.+.|++|.. .|...++.+
T Consensus 86 ~~~~~---~~~~~~~~~~~~~~g~~~~~~D 112 (349)
T 3a0r_A 86 RYFNI---RFSPFRNAKTQLLEGVIITIDD 112 (349)
T ss_dssp BCCEE---EEEEECCTTTTSSCEEEEEEEC
T ss_pred eEEEE---EEEEEEcCCCceeeEEEEEEEe
Confidence 33333 344456666654 577666654
No 158
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=73.31 E-value=13 Score=40.33 Aligned_cols=81 Identities=12% Similarity=0.163 Sum_probs=61.4
Q ss_pred CCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCC----CeeE-EcCCCCeEEEcceEE
Q 003075 753 ASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLP----GGMC-VSSMGRAVSYEQAVA 827 (850)
Q Consensus 753 ~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y----~GvR-iss~Grrf~i~~a~v 827 (850)
.|=.|+|.|.++.++++|+-+||++.+..--.-|.++..-.+.+.++.+.|-..+. .=.| +.+.|.-.|++ +-
T Consensus 162 ~dG~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s~~yR~~~kdG~~vWle--t~ 239 (339)
T 3rty_A 162 ATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQNGCYVLLE--TE 239 (339)
T ss_dssp TTCBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHTTSTTCCCBCCCEEEECTTSCEEEEE--EE
T ss_pred CCCeEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHHHHHHHHcCCcccccccceEEEEEccCCCEEEEE--EE
Confidence 35789999999999999999999999877667788888878888888888765321 1133 47889888885 34
Q ss_pred eE-eecCCC
Q 003075 828 WK-VLDDDD 835 (850)
Q Consensus 828 W~-l~d~~g 835 (850)
|+ +.|..+
T Consensus 240 ~~~~~np~s 248 (339)
T 3rty_A 240 WTSFVNPWS 248 (339)
T ss_dssp EEEEECTTT
T ss_pred EEEEECCCC
Confidence 55 456553
No 159
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=72.48 E-value=6 Score=33.78 Aligned_cols=52 Identities=27% Similarity=0.323 Sum_probs=27.5
Q ss_pred hhhhhH----HHHHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 003075 69 FQNRRC----REKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYM 120 (850)
Q Consensus 69 FQNRRa----k~Krkq~~~~l~~~n~~l~aen~~l~ee~~~l~~e~~~L~~En~~L 120 (850)
.|||-+ |.++.+.-..+...-..+...+..+..||+.|..++..|..||..|
T Consensus 14 ~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 14 AQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456533 3334444444444445555556666666666655556666555543
No 160
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=70.81 E-value=15 Score=32.55 Aligned_cols=39 Identities=13% Similarity=0.016 Sum_probs=27.0
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCC
Q 003075 90 RKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSAP 128 (850)
Q Consensus 90 ~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~~~~ 128 (850)
.+-+.....+..+...|+.+..+|+.+...|+.|+..+.
T Consensus 32 ~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 32 DKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666777777777777777777887877654
No 161
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=69.65 E-value=9.2 Score=33.59 Aligned_cols=42 Identities=29% Similarity=0.253 Sum_probs=29.3
Q ss_pred HHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003075 84 RLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (850)
Q Consensus 84 ~l~~~n~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~ 125 (850)
.++.+...|+.+|..+.++++.+......|+.||++||+|..
T Consensus 24 lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~ 65 (81)
T 2jee_A 24 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 345566667777777777777766666668888888888764
No 162
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=69.61 E-value=15 Score=34.62 Aligned_cols=106 Identities=10% Similarity=0.017 Sum_probs=65.8
Q ss_pred HHHHHHh-cCCCeEeecCCCCCCCCeeEcccHH---HHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccC
Q 003075 732 ALLKQLW-HHSDAIMCCSLKTNASPVFTFANQA---GLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYL 807 (850)
Q Consensus 732 ~~~~~L~-~~~~avl~h~~~~~~dP~F~YaN~a---AL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~ 807 (850)
+.+++++ +-|+.|+..+.. =.++|.|++ |-++|+. -++.++-+-.--.+ ....+...-+-++.+.|-..-
T Consensus 19 ~~l~~IL~~~~~gI~~vD~~----g~I~~~N~a~~~~~~i~g~-~~~~iGr~v~~~~~-~~~~~~v~~i~~~l~~g~~~~ 92 (151)
T 2qkp_A 19 EQANLILNHLPLEITFVNKD----DIFQYYNDSVPAAEMVFKR-TPSQVGRNVELCHP-PKVLDKVKKVFELLRNGQRDK 92 (151)
T ss_dssp HHHHHHHHHSSSEEEEEETT----SBEEEECCCSCGGGCSSCC-CGGGTTSBGGGSSC-HHHHHHHHHHHHHHHTTSBSE
T ss_pred HHHHHHHHhCCCceEEEcCC----CeEEEEeCCCchhhhhcCC-CHHHcCCCHHHhCC-HHHHHHHHHHHHHHHcCCccE
Confidence 3455555 488888877655 689999999 9999994 47888877644333 333333333444555565332
Q ss_pred CCeeEEcCC--CCeEEEcceEEeEeecCCCCeeEEEEeecCc
Q 003075 808 PGGMCVSSM--GRAVSYEQAVAWKVLDDDDSNHCLAFMFMNW 847 (850)
Q Consensus 808 y~GvRiss~--Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~W 847 (850)
.=+.+... |+.+.+ ...-|.|++|.+.|.-.+|.+-
T Consensus 93 -~~~~~~~~~~~~~v~v---~~~Pi~d~~G~~~G~vev~~Di 130 (151)
T 2qkp_A 93 -VNMWFQSERLGKFVYV---TYAAVRDQAGDFQGVLEYVQDI 130 (151)
T ss_dssp -EEEEEEETTTTEEEEE---EEEEEECTTCCEEEEEEEEEEC
T ss_pred -EEEEEecCCCCeEEEE---EEEEEECCCCCEEEEEEEEEEC
Confidence 22333323 555544 3345569999999988888653
No 163
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=69.37 E-value=17 Score=34.89 Aligned_cols=122 Identities=11% Similarity=0.071 Sum_probs=70.7
Q ss_pred eeeeEEeeChhhHHHHhcCccchhhcCCcceeeeeccCCCccHHHHHHHhhcccccccccceeeEEeeccccCCCcEEEE
Q 003075 216 RACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVC 295 (850)
Q Consensus 216 R~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~~~G~waVv 295 (850)
..+-+|.-.+..+-+.+-|.++|-+.+|-+.-+.++..+.++ +.+++.+.- -..++-|.-|+...-++.. + .
T Consensus 8 ~~si~I~ap~~~V~~~v~D~~~~p~~~P~~~~~~v~~~~~~~----~~~~~~~~~--~G~~~~~~s~~~~~~~~~~-i-~ 79 (172)
T 3tfz_A 8 EHTVTVAAPADLVWEVLADVLGYADIFPPTEKVEILEEGQGY----QVVRLHVDV--AGEINTWTSRRDLDPARRV-I-A 79 (172)
T ss_dssp EEEEEESSCHHHHHHHHHCGGGHHHHCSSEEEEEEEEEETTE----EEEEEEEEE--TTEEEEEEEEEEEETTTTE-E-E
T ss_pred EEEEEeCCCHHHHHHHHHhHHHHHhhCcccceEEEEecCCCE----EEEEEEEec--CCEEEEEEEEEEEeCCCCE-E-E
Confidence 456678889999999999999999999987655555443222 122333211 1223333334333222221 1 1
Q ss_pred EeecCCCCCCCCCCCCCcccccccccccee-eeecCCCceEEEEEEeeeccCCCccccchhhhh
Q 003075 296 ERSLTSSTGGPTGPPPSSFVRAEMLASGFL-IRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYE 358 (850)
Q Consensus 296 DvSld~~~~~~~~~~~~~f~r~~rlPSGcl-Iq~~~nG~skVtwVeH~e~d~~~v~~l~Rpl~~ 358 (850)
-.+++. ++ .|.. + .|.. +.+.++|+|+|+|.-+.++....+..++.++..
T Consensus 80 ~~~~~~--~g-------pf~~---~-~g~w~f~~~~~~~t~V~~~~~~~~~~~~l~~~lg~~~~ 130 (172)
T 3tfz_A 80 YRQLET--AP-------IVGH---M-SGEWRAFTLDAERTQLVLTHDFVTRAAGDDGLVAGKLT 130 (172)
T ss_dssp EEEEEC--CT-------TEEE---E-EEEEEEEEEETTEEEEEEEEEEEECCCCTTSSBTTTBC
T ss_pred EEEeeC--CC-------Chhh---c-EEEEEEEECCCCcEEEEEEEEEEEcChhHHHhhccccC
Confidence 112211 01 1110 1 2333 667777899999999999988878888877653
No 164
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=69.00 E-value=8.8 Score=31.61 Aligned_cols=42 Identities=26% Similarity=0.393 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHH
Q 003075 73 RCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLV 114 (850)
Q Consensus 73 Rak~Krkq~~~~l~~~n~~l~aen~~l~ee~~~l~~e~~~L~ 114 (850)
|+|.|++.....++.....|..+|..|..+...|..++.+|+
T Consensus 15 k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 15 KSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555566666666666665555555544
No 165
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=68.93 E-value=11 Score=31.01 Aligned_cols=32 Identities=34% Similarity=0.437 Sum_probs=28.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003075 91 KLSAMNKLLMEENDRLQKQVSHLVYENGYMRQ 122 (850)
Q Consensus 91 ~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~ 122 (850)
.|..-|..+.+|.+.++++++.|..||..||.
T Consensus 31 QLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 31 QLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 36667888999999999999999999999985
No 166
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=68.92 E-value=20 Score=29.61 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003075 97 KLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (850)
Q Consensus 97 ~~l~ee~~~l~~e~~~L~~En~~Lk~el~ 125 (850)
..|..+.+.++.+...|+.+...|++|+.
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~~ 54 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEKE 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445554444554443
No 167
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=68.42 E-value=18 Score=39.63 Aligned_cols=89 Identities=10% Similarity=0.074 Sum_probs=62.0
Q ss_pred CCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeE-EcCCCCeEEEcceEEeEe-e
Q 003075 754 SPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMC-VSSMGRAVSYEQAVAWKV-L 831 (850)
Q Consensus 754 dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR-iss~Grrf~i~~a~vW~l-~ 831 (850)
|=.|+|.|.++.++++|+-+||++.++---.-|.++..-...+.++++.|--....=.| ..+.|.-.|++- -|++ .
T Consensus 287 dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR~~~kdG~~vWv~~--~~~~~~ 364 (387)
T 4f3l_B 287 DGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFITLRS--RWFSFM 364 (387)
T ss_dssp TSBEEEECTHHHHHHCCCHHHHTTSBGGGTBCHHHHHHHHHHHHHHTTCSSCEECCCEEEECTTSCEEEEEE--EEEEEE
T ss_pred CCEEEEECCCcccccCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhcCCCeeeEEEEEEccCCCEEEEEE--EEEEEE
Confidence 57899999999999999999999988766567777777777777776544211111133 378899888863 3444 4
Q ss_pred cC-CCCeeEEEEee
Q 003075 832 DD-DDSNHCLAFMF 844 (850)
Q Consensus 832 d~-~g~~~gqAa~F 844 (850)
|. +|...+.-.+.
T Consensus 365 ~~~~g~~~~ivg~~ 378 (387)
T 4f3l_B 365 NPWTKEVEYIVSTN 378 (387)
T ss_dssp ETTTTEEEEEEEEE
T ss_pred CCCCCCEEEEEEEE
Confidence 55 57776655443
No 168
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=67.28 E-value=7.1 Score=32.54 Aligned_cols=15 Identities=20% Similarity=0.222 Sum_probs=6.2
Q ss_pred HHHHHHHhHHHHHhh
Q 003075 110 VSHLVYENGYMRQQL 124 (850)
Q Consensus 110 ~~~L~~En~~Lk~el 124 (850)
...|+.|...|++++
T Consensus 46 N~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 46 NYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444444
No 169
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=66.90 E-value=20 Score=31.23 Aligned_cols=38 Identities=13% Similarity=0.019 Sum_probs=24.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCC
Q 003075 91 KLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSAP 128 (850)
Q Consensus 91 ~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~~~~ 128 (850)
+-+.....+.+....|+.+..+|+.+...|+.|+..+.
T Consensus 33 krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 33 KAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666777777777777777777776544
No 170
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=66.64 E-value=13 Score=33.68 Aligned_cols=37 Identities=22% Similarity=0.161 Sum_probs=22.4
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003075 89 NRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (850)
Q Consensus 89 n~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~ 125 (850)
|..++..........+.|+.++.+|+.||.+|++|.+
T Consensus 53 ~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 53 NNRLRLESKRLDARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444556677777777788877777754
No 171
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=66.12 E-value=20 Score=29.70 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=17.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003075 93 SAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (850)
Q Consensus 93 ~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~ 125 (850)
+.....+..+.+.++.+...|+.+...|+.|+.
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555543
No 172
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=65.27 E-value=21 Score=38.74 Aligned_cols=105 Identities=9% Similarity=0.023 Sum_probs=70.6
Q ss_pred HHHHHHh-cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCe
Q 003075 732 ALLKQLW-HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGG 810 (850)
Q Consensus 732 ~~~~~L~-~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~G 810 (850)
+.++.++ +.|+.|+..+.. =.++|.|++ .++| ++-+++++-+..--..+.... ....+.++.+.|-.. ..-
T Consensus 239 ~~l~~IL~~l~dgIivvD~~----g~I~~~N~a-e~i~-~~~~e~iGr~v~~~~p~~~~~-~~~~l~~~l~~g~~~-~~~ 310 (369)
T 3cax_A 239 EELKAIFEALPVDVTFIDKD----DRVRFFSPG-ERIF-TRTPSVLGRPVQLCHPPKSVY-VVNKILKAFKEGRKK-EAT 310 (369)
T ss_dssp HHHHHHHHHSSSEEEEECTT----SBEEEECCS-SCSS-CCCGGGTTCBTTTSSCGGGHH-HHHHHHHHHHHTSCS-CEE
T ss_pred HHHHHHHHhCCCcEEEECCC----CcEEEEcCH-HHcc-CChHHHcCCcHHHHCChhhHH-HHHHHHHHHHcCCce-EEE
Confidence 3455554 488999888765 589999999 9999 999999998776555443323 233344555666432 223
Q ss_pred eEEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecCc
Q 003075 811 MCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMNW 847 (850)
Q Consensus 811 vRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~W 847 (850)
+.+...|+.+.+. +--|.|++|.+.|...+|.+-
T Consensus 311 ~~~~~~g~~v~v~---~~PI~d~~G~~~G~v~v~~DI 344 (369)
T 3cax_A 311 FWLRLREKYVYIK---YVPLFNEKGEYIGTLEMTMDI 344 (369)
T ss_dssp EEEEETTEEEEEE---EEEEECTTSCEEEEEEEEEEC
T ss_pred EEEeeCCEEEEEE---EEEEECCCCCEEEEEEEEEcC
Confidence 4455567665553 335679999999988888653
No 173
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=64.73 E-value=5.6 Score=34.69 Aligned_cols=85 Identities=16% Similarity=0.200 Sum_probs=50.1
Q ss_pred ccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHhhHHHHH
Q 003075 22 VRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLME 101 (850)
Q Consensus 22 ~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq~~~~l~~~n~~l~aen~~l~e 101 (850)
.+||.++....-..+... ......++|+.+ |+++..|..|...-+.. ....... . ..
T Consensus 4 ~~ys~e~k~~~v~~~~~~---~g~s~~~ia~~~----gIs~~tl~rW~~~~~~~-----g~~~~~~--~------~~--- 60 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENS---DGASLQQIANDL----GINRVTLKNWIIKYGSN-----HNVQGTT--P------SA--- 60 (97)
T ss_dssp CCCCHHHHHHHHHHHTTG---GGSCHHHHHHHH----TSCHHHHHHHHHHHCCC-----STTCSCC--C------CH---
T ss_pred CCCCHHHHHHHHHHHHHc---CCChHHHHHHHH----CcCHHHHHHHHHHHhhc-----CcccCCC--C------CC---
Confidence 578998887666555432 012467899999 99999999997432210 0000000 0 00
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhccCCCc
Q 003075 102 ENDRLQKQVSHLVYENGYMRQQLHSAPAT 130 (850)
Q Consensus 102 e~~~l~~e~~~L~~En~~Lk~el~~~~~~ 130 (850)
......++.+|+.||++|+.|+.-+...
T Consensus 61 -~~~~~~ei~~L~~e~~~L~~e~~~Lkk~ 88 (97)
T 2jn6_A 61 -AVSEAEQIRQLKKENALQRARTRHPAES 88 (97)
T ss_dssp -HHHTHHHHHHHHHCGGGGGGTTSCCCGG
T ss_pred -CCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112345677888888888888766543
No 174
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=61.40 E-value=25 Score=32.37 Aligned_cols=138 Identities=10% Similarity=0.128 Sum_probs=75.3
Q ss_pred eeeeEEeeChhhHHHHhcCccchhhcCCcceeeeeccCCC--ccHHHHHHHhhcccccccccceeeEEeeccccCCCcEE
Q 003075 216 RACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGN--GGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLV 293 (850)
Q Consensus 216 R~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~--~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~~~G~wa 293 (850)
+.+..|...+..+-+.+.|.++|-+.+|..+-+.++..+. +|.- +.+++.+ -.-+.++-|..|++..-.+ ..
T Consensus 5 ~~s~~i~ap~~~v~~~v~D~~~~p~~~p~~~~~~v~~~~~~~g~~~--~~~~~~~--~~~~~~~~~~~~v~~~~~~--~~ 78 (148)
T 1t17_A 5 VVTKVLPYTPDQLFELVGDVDAYPKFVPWITGMRTWNGRVDGAVST--VDAEAQV--GFSFLREKFATRVRRDKDA--RS 78 (148)
T ss_dssp EEEEEESSCTHHHHHHHTTTTCCSSCCSSCCCCCEEEEEEETTEEE--EEEEEEC--STTSSCCEEEEEEEEETTT--CE
T ss_pred EEEEEecCCHHHHHHHHHHHhhHHhhCCCcCeeEEEEecCCCCCce--EEEEEEE--EecceeEEEEEEEEEcCCC--cE
Confidence 4566778889999999999999999888654333333211 1110 2233333 2235566677787753333 22
Q ss_pred EEEeecCCCCCCCCCCCCCccccccccccceeeeecCCCceEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHH-
Q 003075 294 VCERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAM- 372 (850)
Q Consensus 294 VvDvSld~~~~~~~~~~~~~f~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~Rpl~~Sg~afgar~~~~aL- 372 (850)
|.-.++++ + ...+.. -.-+++.++| |+|++.-+.|+.. .++..+...-+.-.+++.+.++
T Consensus 79 i~~~~~~G----~----f~~~~g------~w~f~~~~~g-t~v~~~~~~~~~~----~l~~~l~~~~~~~~~~~~~~~f~ 139 (148)
T 1t17_A 79 IDVSLLYG----P----FKRLNN------GWRFMPEGDA-TRVEFVIEFAFKS----ALLDAMLAANVDRAAGKLIACFE 139 (148)
T ss_dssp EEEEESST----T----SSCEEE------EEEEEEETTE-EEEEEEEEECCSC----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCC----C----hhccEE------EEEEEECCCC-eEEEEEEEEEECc----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334442 1 111112 2234677777 9999988888752 2344444222222556666666
Q ss_pred HHHHhh
Q 003075 373 RHIRQI 378 (850)
Q Consensus 373 r~~e~l 378 (850)
+.++.+
T Consensus 140 ~r~~~~ 145 (148)
T 1t17_A 140 ARAQQL 145 (148)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 355543
No 175
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}
Probab=61.19 E-value=31 Score=32.68 Aligned_cols=142 Identities=8% Similarity=0.087 Sum_probs=78.2
Q ss_pred eeeeEEeeChhhHHHHhcCccchhhcCCcceeeeeccCCCccHHHHHHHhhcccccccccceeeEEeeccccCCCcEEEE
Q 003075 216 RACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVC 295 (850)
Q Consensus 216 R~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~~~G~waVv 295 (850)
..+.+|.-.+..+-+.+.|.++|...+|..........| ....+.+++.+- -...|+-|..||...-++ .-+..
T Consensus 10 ~~s~~I~ap~e~v~~lv~Dve~w~~~yp~~~p~~~~~~~---~~~~~~a~l~vg--~~~~~~~~~s~~~~~~~~-~~I~~ 83 (161)
T 3p9v_A 10 NRDLEIPASYDEVFDLLADVPKSASHFPKVDKLVDLGNN---AYRWEMEKVGVD--KHAIQSVYACTYHADKEA-GKITW 83 (161)
T ss_dssp EEEEEESSCHHHHHHHHTCHHHHHTTSTTEEEEEEEETT---EEEEEECCBSSG--GGCBCCEEEEEEEEETTT-TEEEE
T ss_pred EEEEEEcCCHHHHHHHHhChhhhHhhCCCeEEEEEcCCC---ceEEEEEEEeee--eEEEEEEEEEEEEEcCCC-CEEEE
Confidence 456778889999999999999999999987665433322 101111222222 223477888888765433 32222
Q ss_pred EeecCCCCCCCCCCCCCccccccccccceeeeecCCCceEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHH-HH
Q 003075 296 ERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAM-RH 374 (850)
Q Consensus 296 DvSld~~~~~~~~~~~~~f~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~Rpl~~Sg~afgar~~~~aL-r~ 374 (850)
+ ++++ + |. +.+-.-.-+.+.++|.|+|+|.=+.|.. ..++.++..+...-.--++++.+.+. +.
T Consensus 84 ~-~~~g----~-------~~--~~l~g~w~f~p~~~g~t~V~~~~~~e~~-~pl~~ll~~~~~~~~~~~~~~~v~af~~r 148 (161)
T 3p9v_A 84 S-PIKG----E-------GN--GVVSGSWTLSAKGDNATAVKFQTSAELT-VPLPSLLKLAISPVIKHEFNSLVDTYMAN 148 (161)
T ss_dssp E-ECTT----S-------TT--EEEEEEEEEEESSSSCEEEEEEEEEEEE-ECSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred E-EecC----c-------cc--eeEEEEEEEEECCCCeEEEEEEEEEEEc-CcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2222 1 10 0111234467788888999999888876 12344444333111111444555544 34
Q ss_pred HHhh
Q 003075 375 IRQI 378 (850)
Q Consensus 375 ~e~l 378 (850)
++.+
T Consensus 149 a~~~ 152 (161)
T 3p9v_A 149 LKKA 152 (161)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 4443
No 176
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=57.35 E-value=3.3 Score=38.21 Aligned_cols=67 Identities=25% Similarity=0.279 Sum_probs=45.0
Q ss_pred CCChhhhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCC
Q 003075 59 NIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSAPA 129 (850)
Q Consensus 59 gL~~rQVkvWFQNRRak~Krkq~~~~l~~~n~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~~~~~ 129 (850)
||++.+|.-.=|-||+ .|.+--...++ .+-..+.+.|..++..++.++.+|..||..|+.|++.+..
T Consensus 27 ~Ls~~e~~~lK~~RR~-lKNR~yAq~CR---~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~ 93 (107)
T 3a5t_A 27 GLSKEEIIQLKQRRRT-LKNRGYAASCR---VKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRS 93 (107)
T ss_dssp TCCHHHHHHHHHHHHH-HHHHHHHHHHH---HHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSS
T ss_pred CCCHHHHHHHHHHHHh-hhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888777665553 33322222222 2233456777777778888888899999999999987653
No 177
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=56.79 E-value=7.5 Score=40.70 Aligned_cols=39 Identities=23% Similarity=0.211 Sum_probs=24.3
Q ss_pred HHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccC
Q 003075 85 LQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSA 127 (850)
Q Consensus 85 l~~~n~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~~~ 127 (850)
++.+|+.|+.++..+++++.+ .++|+.||++||+.|.-.
T Consensus 24 l~~eN~~Lk~e~~~l~~~~~~----~~~l~~En~rLr~lL~~~ 62 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLESE----VADLKKENKDLKESLDIT 62 (255)
T ss_dssp --CTTTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCc
Confidence 334555555555555555433 456889999999988743
No 178
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=53.33 E-value=12 Score=38.42 Aligned_cols=58 Identities=21% Similarity=0.351 Sum_probs=39.2
Q ss_pred CCCCccccccCCCcceEEEEecCCCCCCCCCCccCCCCCCceeE-EEeeecccccCChHHHHHHHhh--hhcccccc
Q 003075 416 LDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVL-CAKASMLLQNVPPALLVRFLRE--HRSEWADY 489 (850)
Q Consensus 416 ~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl-~A~tS~~L~pvpp~~lf~FLRd--~R~eWd~~ 489 (850)
.+.+|..... .++|+|..+...+ . |.++ .-++..-+..++|+.||++|.| .|.+||..
T Consensus 45 ~~~~W~~~~~--~~gv~vy~~~~~~-----~---------g~~~~~~K~~~~~~~~~~~~v~~~l~d~~~r~~Wd~~ 105 (255)
T 2e3n_A 45 GDANWQLVVE--EGEMKVYRREVEE-----N---------GIVLDPLKATHAVKGVTGHEVCNYFWNVDVRNDWETT 105 (255)
T ss_dssp TCTTEEEEEE--ETTEEEEEECCEE-----T---------TEECCCEEEEEEEETCCHHHHHHHHHCGGGHHHHCCS
T ss_pred CCCCcEEEEe--CCCEEEEEEEcCC-----C---------CceeeeEEEEEEEcCCCHHHHHHHHhCcchHhhhhhh
Confidence 3568987753 4679999887641 1 1111 1233444546999999999997 89999973
No 179
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=52.78 E-value=21 Score=28.67 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=26.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccC
Q 003075 91 KLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSA 127 (850)
Q Consensus 91 ~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~~~ 127 (850)
.++..+..+.+.|++|...+++-|.|...|++|++++
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666677777777777777777778888877764
No 180
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=51.79 E-value=37 Score=27.39 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhcc
Q 003075 103 NDRLQKQVSHLVYENGYMRQQLHS 126 (850)
Q Consensus 103 ~~~l~~e~~~L~~En~~Lk~el~~ 126 (850)
.+.|+.++.+|..||..|+.++..
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~ 47 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKA 47 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666554
No 181
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=51.30 E-value=21 Score=28.73 Aligned_cols=34 Identities=21% Similarity=0.247 Sum_probs=23.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 003075 93 SAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHS 126 (850)
Q Consensus 93 ~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~~ 126 (850)
..+.+.|+.|+..++.++..|..+++.|+.+|.+
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456667777777777777777777777777653
No 182
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=49.12 E-value=81 Score=29.45 Aligned_cols=96 Identities=5% Similarity=-0.160 Sum_probs=70.2
Q ss_pred hcCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccc-cccCChhcHHHHHHHHHHHHHhccccCCCeeEEcCC
Q 003075 738 WHHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIML-DKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSM 816 (850)
Q Consensus 738 ~~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lps-r~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~ 816 (850)
=..|+.|+.=+. |=...|-|+++..+.+++-++.++-+. +..+.-....+=+..+.+..++|-...-.+-.++..
T Consensus 24 d~l~~Gii~lD~----~g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~~~~~~f~~rf~~~~~~g~l~~~~~~v~~~~ 99 (125)
T 1nwz_A 24 DGLAFGAIQLDG----DGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGNLNTMFEYTFDYQ 99 (125)
T ss_dssp TTCSSEEEEEET----TCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTCCEEEEEEEECTT
T ss_pred hccCceEEEECC----CCEEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCceeEEEEEEEcCC
Confidence 346777776553 367999999999999999999999887 445555555554555556566999887788888999
Q ss_pred CCeEEEcceEEeEeecCCCCeeEE
Q 003075 817 GRAVSYEQAVAWKVLDDDDSNHCL 840 (850)
Q Consensus 817 Grrf~i~~a~vW~l~d~~g~~~gq 840 (850)
|+++.++=.. +.+++|...|.
T Consensus 100 ~~p~~v~i~l---~~~~~~~~~~i 120 (125)
T 1nwz_A 100 MTPTKVKVHM---KKALSGDSYWV 120 (125)
T ss_dssp SCCEEEEEEE---EECSSSSEEEE
T ss_pred CCEEEEEEEE---EEcCCCCEEEE
Confidence 9988875333 34666665554
No 183
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=48.94 E-value=22 Score=26.30 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003075 98 LLMEENDRLQKQVSHLVYENGYMRQQLH 125 (850)
Q Consensus 98 ~l~ee~~~l~~e~~~L~~En~~Lk~el~ 125 (850)
.++.++...++++.+|+.+|+.|.+|+-
T Consensus 4 ~mRrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 4 GMRRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 4566777778888888888888888763
No 184
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A
Probab=48.84 E-value=1.1e+02 Score=29.53 Aligned_cols=38 Identities=8% Similarity=0.062 Sum_probs=30.5
Q ss_pred eeeeEEeeChhhHHHHhcCccchhhcCCcceeeeeccC
Q 003075 216 RACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPT 253 (850)
Q Consensus 216 R~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~ 253 (850)
..+.+|.-.+..+-+.+.|.++|-+.+|.+.-..++..
T Consensus 6 ~~si~I~a~~~~v~~lv~Dv~~~p~w~p~~~~~~~~~~ 43 (169)
T 3tvq_A 6 DNSIVVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQ 43 (169)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCTTEEEEEEEEE
T ss_pred EEEEEecCCHHHHHHHHHhhhHHHHHHhheeEEEEEec
Confidence 45667778888999999999999999997765555554
No 185
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=48.55 E-value=34 Score=30.56 Aligned_cols=43 Identities=21% Similarity=0.307 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003075 74 CREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYE 116 (850)
Q Consensus 74 ak~Krkq~~~~l~~~n~~l~aen~~l~ee~~~l~~e~~~L~~E 116 (850)
||.|+.++...++.++..+..+-+.+++|+.++.++...++..
T Consensus 42 CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k 84 (90)
T 2wt7_B 42 CRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVK 84 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666677766666666666666666665555544443
No 186
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=46.10 E-value=23 Score=28.11 Aligned_cols=46 Identities=22% Similarity=0.305 Sum_probs=33.1
Q ss_pred CcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhh
Q 003075 20 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQ 70 (850)
Q Consensus 20 kR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQ 70 (850)
++.+||+++.......+.... +......++|+++ |+++.+|..|..
T Consensus 2 ~r~~ys~efK~~~~~~~~~g~-s~~~~~~~vA~~~----gIs~~tl~~W~~ 47 (59)
T 2glo_A 2 SRRIFTPHFKLQVLESYRNDN-DCKGNQRATARKY----NIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCCHHHHHHHHHHHHHCT-TTTTCHHHHHHHT----TSCHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHHHHcCC-CcchHHHHHHHHH----CcCHHHHHHHHH
Confidence 456799998877755555432 2122367899999 999999999964
No 187
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=46.08 E-value=27 Score=26.05 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003075 95 MNKLLMEENDRLQKQVSHLVYENGYMRQ 122 (850)
Q Consensus 95 en~~l~ee~~~l~~e~~~L~~En~~Lk~ 122 (850)
+|+.+..+.+.-+.++.+|+.||..|++
T Consensus 8 ENekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 8 ENEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 4455555555555666667777766653
No 188
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=45.95 E-value=1.1e+02 Score=27.70 Aligned_cols=47 Identities=34% Similarity=0.365 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003075 79 RKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (850)
Q Consensus 79 kq~~~~l~~~n~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~ 125 (850)
..++..++.......+.-..|..+.++|..+.+.|+.||+..+++=.
T Consensus 50 e~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~~~~~ 96 (104)
T 3s9g_A 50 EDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHRQQER 96 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 33444555555555666777888888888888999999998887633
No 189
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=45.90 E-value=87 Score=29.49 Aligned_cols=95 Identities=6% Similarity=-0.105 Sum_probs=69.6
Q ss_pred cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccc-cccCChhcHHHHHHHHHHHHHhccccCCCeeEEcCCC
Q 003075 739 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIML-DKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMG 817 (850)
Q Consensus 739 ~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lps-r~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~G 817 (850)
..|+.|+.-+. +=...|-|+++..+.+++-+++++-+. +..+.-....+=+..+.+..++|-+..-.+-.++..|
T Consensus 30 ~l~~GiivlD~----dg~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~~~~~~f~grf~~~~~~G~l~~~~~yv~~~~~ 105 (129)
T 1mzu_A 30 ALPVGAIQVDG----SGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGTLDARFDFVFDFQM 105 (129)
T ss_dssp GCSSEEEEEET----TCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSCCEEEEEEEEECSS
T ss_pred ccCceEEEECC----CCeEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCceeEEEEEEEcCCC
Confidence 36777766553 367999999999999999999999887 4455555555555555666669998877788889999
Q ss_pred CeEEEcceEEeEeecCCCCeeEE
Q 003075 818 RAVSYEQAVAWKVLDDDDSNHCL 840 (850)
Q Consensus 818 rrf~i~~a~vW~l~d~~g~~~gq 840 (850)
+++.++=.. +.+++|...|.
T Consensus 106 ~p~~v~i~l---~~~~~~~~~~i 125 (129)
T 1mzu_A 106 APVRVQIRM---QNAGVPDRYWI 125 (129)
T ss_dssp CEEEEEEEE---EECSSTTEEEE
T ss_pred CEEEEEEEE---EEcCCCCEEEE
Confidence 988874333 34666665553
No 190
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=45.62 E-value=16 Score=29.55 Aligned_cols=22 Identities=18% Similarity=0.135 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHhh
Q 003075 103 NDRLQKQVSHLVYENGYMRQQL 124 (850)
Q Consensus 103 ~~~l~~e~~~L~~En~~Lk~el 124 (850)
...|+.+...|+.++..|++++
T Consensus 31 v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 31 VAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444555555555555554
No 191
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=41.54 E-value=18 Score=33.46 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhcc
Q 003075 103 NDRLQKQVSHLVYENGYMRQQLHS 126 (850)
Q Consensus 103 ~~~l~~e~~~L~~En~~Lk~el~~ 126 (850)
.++|.+++++|+.||..||+++.+
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466889999999999999999976
No 192
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=41.06 E-value=71 Score=29.06 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhHHHHHhhccC
Q 003075 106 LQKQVSHLVYENGYMRQQLHSA 127 (850)
Q Consensus 106 l~~e~~~L~~En~~Lk~el~~~ 127 (850)
.++++.+|+.|+.+||+.+..+
T Consensus 73 ~~~~~e~Lq~E~erLr~~v~~l 94 (100)
T 1go4_E 73 LREDHSQLQAECERLRGLLRAM 94 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666777777777766654
No 193
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=41.05 E-value=53 Score=25.35 Aligned_cols=34 Identities=32% Similarity=0.382 Sum_probs=26.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003075 92 LSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (850)
Q Consensus 92 l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~ 125 (850)
|...-+.+...+.+|+..+.-|..||+.|||-+.
T Consensus 8 LE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 4455566677777888888999999999998653
No 194
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=40.56 E-value=73 Score=30.37 Aligned_cols=40 Identities=10% Similarity=0.028 Sum_probs=19.0
Q ss_pred HHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003075 85 LQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQL 124 (850)
Q Consensus 85 l~~~n~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el 124 (850)
++.+...++..++.+.++++++++++..|..++.+|..++
T Consensus 94 lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 94 LKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444455555555555555554444
No 195
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=38.74 E-value=24 Score=28.27 Aligned_cols=22 Identities=50% Similarity=0.638 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHhhc
Q 003075 104 DRLQKQVSHLVYENGYMRQQLH 125 (850)
Q Consensus 104 ~~l~~e~~~L~~En~~Lk~el~ 125 (850)
+++-+++..|+.||..||+||+
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~ 27 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELE 27 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHH
No 196
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=38.63 E-value=57 Score=25.23 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=19.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003075 92 LSAMNKLLMEENDRLQKQVSHLVYENGYMRQQL 124 (850)
Q Consensus 92 l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el 124 (850)
++.+|-.+....+.+++-+..||.|.++|..|.
T Consensus 15 lkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 15 LKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 444444444444556666666777777766654
No 197
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=38.33 E-value=1.1e+02 Score=23.76 Aligned_cols=39 Identities=18% Similarity=0.161 Sum_probs=26.3
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccC
Q 003075 89 NRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSA 127 (850)
Q Consensus 89 n~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~~~ 127 (850)
|.-++..-..+++.+-+++...|.|..-.+.|++|+.|+
T Consensus 5 naylrkkiarlkkdnlqlerdeqnlekiianlrdeiarl 43 (52)
T 3he5_B 5 NAYLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARL 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHH
Confidence 444555566677777777777777777677777777654
No 198
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=37.55 E-value=36 Score=35.69 Aligned_cols=32 Identities=28% Similarity=0.224 Sum_probs=15.3
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003075 90 RKLSAMNKLLMEENDRLQKQVSHLVYENGYMR 121 (850)
Q Consensus 90 ~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk 121 (850)
..+.+.|+.|+++.+++.+|+.+|+.|+.+|+
T Consensus 64 ~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 64 DSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444555555555444444444444444433
No 199
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=37.42 E-value=79 Score=26.88 Aligned_cols=28 Identities=14% Similarity=0.084 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003075 97 KLLMEENDRLQKQVSHLVYENGYMRQQL 124 (850)
Q Consensus 97 ~~l~ee~~~l~~e~~~L~~En~~Lk~el 124 (850)
..+..++..+..+...|+.++..|..|+
T Consensus 39 ~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 39 VTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444
No 200
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=36.84 E-value=1.4e+02 Score=28.24 Aligned_cols=37 Identities=14% Similarity=0.153 Sum_probs=27.0
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhh
Q 003075 19 TKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNR 72 (850)
Q Consensus 19 rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNR 72 (850)
..+..|+.+++..|.. ... .+.+ |++-.+|+-.+...
T Consensus 50 ~g~R~Y~~~dl~~l~~------------I~~-lr~~----G~sL~eIk~~l~~~ 86 (148)
T 3gpv_A 50 KGDRIFNEEALKYLEM------------ILC-LKNT----GMPIQKIKQFIDWS 86 (148)
T ss_dssp TCCEEBCHHHHHHHHH------------HHH-HHTT----TCCHHHHHHHHHHH
T ss_pred CCCeecCHHHHHHHHH------------HHH-HHHc----CCCHHHHHHHHHhh
Confidence 4566788988888842 333 4777 99999999888754
No 201
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=36.11 E-value=47 Score=35.77 Aligned_cols=65 Identities=8% Similarity=0.118 Sum_probs=47.4
Q ss_pred hHHHHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHH
Q 003075 730 GDALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAK 798 (850)
Q Consensus 730 ~~~~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~ 798 (850)
.+++.+.+.. .+.+|+.-+ +|-.|.|.|.+..++++|+-+||++.+..--..|.++.+-...|..
T Consensus 84 ~~~~~~~~l~a~~~~i~v~~----~~G~i~yvs~~~~~~lGy~~~el~g~~~~~~ihp~D~~~~~~~l~~ 149 (361)
T 4f3l_A 84 NEEFTQLMLEALDGFFLAIM----TDGSIIYVSESVTSLLEHLPSDLVDQSIFNFIPEGEHSEVYKILST 149 (361)
T ss_dssp HHHHHHHHHHHTTEEEEEEE----TTSBEEEECTTHHHHHCCCHHHHTTSBGGGGSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCceEEEEc----CCccEEEEechhhhhcCCCHHHhcCCcHHHhcCHHHHHHHHHHhcc
Confidence 4555555555 344444332 3678999999999999999999999987766678887776666654
No 202
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=35.99 E-value=30 Score=29.79 Aligned_cols=33 Identities=21% Similarity=0.207 Sum_probs=27.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003075 93 SAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (850)
Q Consensus 93 ~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~ 125 (850)
+.+-+.|++.+.+|.....+|..||..||+-..
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN~~Lk~~as 46 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLERENTLLKTLAS 46 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345678899999999999999999999997654
No 203
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=35.70 E-value=57 Score=29.41 Aligned_cols=50 Identities=20% Similarity=0.298 Sum_probs=38.2
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHH
Q 003075 19 TKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCR 75 (850)
Q Consensus 19 rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak 75 (850)
++|.+||.++...+-..+.+++.+. ..++|+.+ |+++..|.-|..+++..
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~----gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENPDLR---KGEIARRF----NIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHH----TCCHHHHHHHHHTHHHH
T ss_pred CcceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHh----CCCHHHHHHHHhchhhh
Confidence 3567899999988877775554433 34689999 99999999998776643
No 204
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=35.66 E-value=44 Score=35.69 Aligned_cols=76 Identities=14% Similarity=0.235 Sum_probs=55.3
Q ss_pred CCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccc-cCCCeeEE-cCCCCeEEEcceEEeEee
Q 003075 754 SPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFA-YLPGGMCV-SSMGRAVSYEQAVAWKVL 831 (850)
Q Consensus 754 dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~-~~y~GvRi-ss~Grrf~i~~a~vW~l~ 831 (850)
|=.|+|.|.++..+++|+-+||++.+.---.-|.++..-.+.+.++++.|-. ....=.|+ .+.|.-.|++ +-|.++
T Consensus 174 dG~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vwve--t~~~~~ 251 (309)
T 3gdi_A 174 NCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFRTRNGEYITLD--TSWSSF 251 (309)
T ss_dssp TCBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEEECTTSCEEEEE--EEEEEE
T ss_pred CCeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCceeeceEEEEEccCCCEEEEE--EEEEEE
Confidence 6789999999999999999999998765555677777777778888875432 11012454 7788888885 456553
No 205
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=35.44 E-value=1.1e+02 Score=25.28 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHhHHHHHhh
Q 003075 106 LQKQVSHLVYENGYMRQQL 124 (850)
Q Consensus 106 l~~e~~~L~~En~~Lk~el 124 (850)
|+.++.+|..||..|+.++
T Consensus 35 Le~~v~~L~~eN~~L~~ev 53 (63)
T 2dgc_A 35 LEDKVEELLSKNYHLENEV 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444443
No 206
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=34.50 E-value=45 Score=28.68 Aligned_cols=32 Identities=19% Similarity=0.326 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhccCC
Q 003075 97 KLLMEENDRLQKQVSHLVYENGYMRQQLHSAP 128 (850)
Q Consensus 97 ~~l~ee~~~l~~e~~~L~~En~~Lk~el~~~~ 128 (850)
..|.+++++++.++.+|+.+|..|++++....
T Consensus 50 ~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 50 QYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44667777788888899999999999987654
No 207
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=34.36 E-value=1.6e+02 Score=31.39 Aligned_cols=78 Identities=17% Similarity=0.208 Sum_probs=55.0
Q ss_pred CCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHh-ccccCCCeeEE-cCCCCeEEEcceEEeEe-
Q 003075 754 SPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQ-GFAYLPGGMCV-SSMGRAVSYEQAVAWKV- 830 (850)
Q Consensus 754 dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~q-G~~~~y~GvRi-ss~Grrf~i~~a~vW~l- 830 (850)
|=.|+|.|.++..+++|+-+||++.+.---.-|.++..-.+.+.++++. |-.....=.|+ .+.|.-.|++- -|.+
T Consensus 185 dG~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vwvet--~~~~~ 262 (320)
T 4dj2_A 185 SCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFCARNGEYVTMDT--SWAGF 262 (320)
T ss_dssp TCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHTTSSSCCEECCCEEEECSSSCEEEEEC--EEEEE
T ss_pred CceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHHHHHHhcCCCcccceEEEEEccCCCEEEEEE--EEEEE
Confidence 5789999999999999999999998766555677777777777777773 43221112343 67788777753 4444
Q ss_pred ecC
Q 003075 831 LDD 833 (850)
Q Consensus 831 ~d~ 833 (850)
+|.
T Consensus 263 ~np 265 (320)
T 4dj2_A 263 VHP 265 (320)
T ss_dssp ECT
T ss_pred ECC
Confidence 443
No 208
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=33.80 E-value=1.2e+02 Score=32.54 Aligned_cols=79 Identities=13% Similarity=0.154 Sum_probs=56.8
Q ss_pred CCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhcccc--CCCeeE-EcCCCCeEEEcceEEeE
Q 003075 753 ASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAY--LPGGMC-VSSMGRAVSYEQAVAWK 829 (850)
Q Consensus 753 ~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~--~y~GvR-iss~Grrf~i~~a~vW~ 829 (850)
.|=.|+|.|.++.++++|+-+||++.+..--.-|.++..-.+.+.++++.|-.. ...=.| ..+.|.-.|++ +-|+
T Consensus 182 ~dG~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~~~kdG~~vwve--t~~~ 259 (317)
T 4dj3_A 182 PGCVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRFCTQNGEYVILD--SSWS 259 (317)
T ss_dssp TTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEEECTTSCEEEEE--EEEE
T ss_pred CCCeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHHHHHHHHcCCCccccceEEEEEccCCCEEEEE--EEEE
Confidence 368899999999999999999999987765556777777777788888764431 111234 37788888886 3455
Q ss_pred e-ecC
Q 003075 830 V-LDD 833 (850)
Q Consensus 830 l-~d~ 833 (850)
+ +|.
T Consensus 260 ~~~np 264 (317)
T 4dj3_A 260 SFVNP 264 (317)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 4 443
No 209
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=33.68 E-value=29 Score=25.59 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=31.0
Q ss_pred cCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhh
Q 003075 23 RYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRR 73 (850)
Q Consensus 23 r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRR 73 (850)
.++.++...+...+... ....++|+.+ |++...|.-|+....
T Consensus 5 ~~~~~~~~~i~~l~~~g-----~s~~~ia~~l----gvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG-----HPRQQLAIIF----GIGVSTLYRYFPASS 46 (52)
T ss_dssp SSCTTHHHHHHHHHHTT-----CCHHHHHHTT----SCCHHHHHHHSCTTC
T ss_pred CCCHHHHHHHHHHHHcC-----CCHHHHHHHH----CCCHHHHHHHHHHcc
Confidence 56777776666666543 2457889999 999999999986543
No 210
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=33.63 E-value=1.2e+02 Score=27.25 Aligned_cols=48 Identities=15% Similarity=0.045 Sum_probs=37.0
Q ss_pred ccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003075 22 VRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (850)
Q Consensus 22 ~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 78 (850)
..+++.|.+.+.-.|-... .-.++|..+ |+++..|+.+...=|.+.|+
T Consensus 24 ~~L~~~~r~vl~l~~~~g~-----s~~EIA~~l----giS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 24 SLLTNKQRNYLELFYLEDY-----SLSEIADTF----NVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp GGSCHHHHHHHHHHHTSCC-----CHHHHHHHT----TCCHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHcCC-----CHHHHHHHH----CcCHHHHHHHHHHHHHHHHH
Confidence 3588999999988765542 467899999 99999999988755555544
No 211
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=33.50 E-value=1e+02 Score=27.86 Aligned_cols=48 Identities=10% Similarity=0.077 Sum_probs=37.4
Q ss_pred ccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003075 22 VRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (850)
Q Consensus 22 ~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 78 (850)
..+++.|.+.+...|-... .-.++|..+ |+++..|+.+.+.=|.+.|+
T Consensus 21 ~~L~~~~r~vl~l~y~~g~-----s~~EIA~~l----giS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 21 ALLTDKQMNYIELYYADDY-----SLAEIADEF----GVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GGSCHHHHHHHHHHHHTCC-----CHHHHHHHH----TCCHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHcCC-----CHHHHHHHH----CcCHHHHHHHHHHHHHHHHH
Confidence 3689999999998765542 467899999 99999999998765555444
No 212
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=31.42 E-value=1.3e+02 Score=28.64 Aligned_cols=59 Identities=8% Similarity=0.081 Sum_probs=33.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 003075 68 WFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHS 126 (850)
Q Consensus 68 WFQNRRak~Krkq~~~~l~~~n~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~~ 126 (850)
.|+-++.-..-.+....+..+...++.+....+.+++.+.+++..|+.++..|+.++.+
T Consensus 70 l~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~ 128 (138)
T 3hnw_A 70 YFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVK 128 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443333333333333444455566666666666666777777777777777776654
No 213
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=31.22 E-value=1.2e+02 Score=26.54 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=31.2
Q ss_pred HHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003075 80 KEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (850)
Q Consensus 80 q~~~~l~~~n~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~ 125 (850)
.+...++.+|..+..++..++...+.+..+.++|+.|....++.+.
T Consensus 27 mEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 27 MEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777777777777777777777665555443
No 214
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=30.90 E-value=51 Score=23.68 Aligned_cols=41 Identities=10% Similarity=0.136 Sum_probs=30.6
Q ss_pred ccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhh
Q 003075 22 VRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQN 71 (850)
Q Consensus 22 ~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQN 71 (850)
..++.++...+...+.... ...++|+.+ |++...|.-|...
T Consensus 4 ~~l~~~~~~~i~~~~~~g~-----s~~~IA~~l----gis~~Tv~~~~~~ 44 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLLNV-----SLHEMSRKI----SRSRHCIRVYLKD 44 (51)
T ss_dssp CCCCHHHHHHHHHHHHTTC-----CHHHHHHHH----TCCHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHcCC-----CHHHHHHHH----CcCHHHHHHHHhh
Confidence 4678888766666665432 366889999 9999999999854
No 215
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=29.20 E-value=1.2e+02 Score=28.38 Aligned_cols=65 Identities=14% Similarity=0.098 Sum_probs=35.1
Q ss_pred CChhhhhhhhhhhhHHH-----HHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 003075 60 IEPKQIKVWFQNRRCRE-----KQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHS 126 (850)
Q Consensus 60 L~~rQVkvWFQNRRak~-----Krkq~~~~l~~~n~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~~ 126 (850)
|.....+.|=+|+-... ++.+... +..-.+|+.+...|.++.++...++++||.+|..|+..+..
T Consensus 41 l~~~eaQAaTCNqTV~tL~~SL~~ekaq~--q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 41 FQDVEAQAATANHTVMALMASLDAEKAQG--QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 44555666667763221 1111111 22344556666666666666666777777777766666543
No 216
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=27.29 E-value=63 Score=27.93 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 003075 97 KLLMEENDRLQKQVSHLVYENGYMRQQLHS 126 (850)
Q Consensus 97 ~~l~ee~~~l~~e~~~L~~En~~Lk~el~~ 126 (850)
..|.+++.++..+..+|+.|+..|+++|+.
T Consensus 50 ~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 50 KKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666677777888888888888888764
No 217
>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A
Probab=26.94 E-value=4.1e+02 Score=25.11 Aligned_cols=111 Identities=9% Similarity=0.100 Sum_probs=64.0
Q ss_pred eeeeEEeeChhhHHHHhcCccchhhcCCcceeeeeccCCCccHHHHHHHhhc-ccccccccceeeEEeeccccCCCcEEE
Q 003075 216 RACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTY-APTTLAAARDFWLLRYSTSLEDGSLVV 294 (850)
Q Consensus 216 R~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~-v~SPLvp~Re~~fLRyckq~~~G~waV 294 (850)
..+.+|.-.+..+-+.+-|.++|-+.+|-..-..+++.+.++ +.+.+. ..+.- -.++-++.|+.-. .++.-+
T Consensus 6 ~~si~I~a~~~~V~~lV~Dve~yP~~~p~~~~~~vl~~~~~~----~~~rl~~~~~~~-G~~~~~ts~~~~d-~~~~~I- 78 (159)
T 3tl1_A 6 DNEITIAAPMELVWNMTNDIEKWPGLFSEYASVEVLGRDDDK----VTFRLTMHPDAD-GKVWSWVSERVAD-PVTRTV- 78 (159)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCSSEEEEEEEEECSSE----EEEEEEECCCTT-SCCCEEEEEEEEE-TTTTEE-
T ss_pred EEEEEecCCHHHHHHHHHhHHHhhhhhhCceEEEEEecCCCE----EEEEEEEEeccC-ceEEEEEEEEEEc-CCCCEE-
Confidence 456778889999999999999999999977555555543221 112221 01111 1344445566432 223222
Q ss_pred EEeecCCCCCCCCCCCCCccccccccccceeeeecCCCceEEEEEEeeeccCC
Q 003075 295 CERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAW 347 (850)
Q Consensus 295 vDvSld~~~~~~~~~~~~~f~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~ 347 (850)
+..+. .++| | +.+=...-+.+.++ +|+|+|.-+.++++.
T Consensus 79 -~~~~~--~~gP-------f---~~l~g~W~f~p~~~-gt~V~~~~df~~~~~ 117 (159)
T 3tl1_A 79 -RAQRV--ETGP-------F---QYMNIVWEYAETAE-GTVMRWTQDFAMKPD 117 (159)
T ss_dssp -EEEES--SCTT-------E---EEEEEEEEEEEETT-EEEEEEEEEEEECTT
T ss_pred -EEEEc--cCCC-------h---hhccCEEEEEECCC-CEEEEEEEEEEecCC
Confidence 22211 1111 2 22334455677777 599999999999765
No 218
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=26.82 E-value=2e+02 Score=26.78 Aligned_cols=38 Identities=26% Similarity=0.233 Sum_probs=19.1
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 003075 89 NRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHS 126 (850)
Q Consensus 89 n~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~~ 126 (850)
|.....-.+.|.++.-.-+++++.|+.|+..|+++|+.
T Consensus 52 NqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~ 89 (121)
T 3mq7_A 52 NHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQD 89 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444455566666666666666554
No 219
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=26.73 E-value=52 Score=28.13 Aligned_cols=37 Identities=30% Similarity=0.483 Sum_probs=25.2
Q ss_pred HHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHHHH
Q 003075 29 VEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEAS 83 (850)
Q Consensus 29 l~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq~~~ 83 (850)
+...+-.|+.+|||++.--.+ |+ .|||-||+++|...
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq-aR-----------------RNRRRRWR~RQrQI 54 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ-AR-----------------RNRRRRWRERQRQI 54 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH-HH-----------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH-HH-----------------HHHHHHHHHHHHHH
Confidence 345566799999998763333 32 48999999876543
No 220
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=26.34 E-value=4.1 Score=37.56 Aligned_cols=49 Identities=18% Similarity=0.276 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003075 73 RCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMR 121 (850)
Q Consensus 73 Rak~Krkq~~~~l~~~n~~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk 121 (850)
+||.||..+...++.++..|..+.+.|.+|+..+..+.+.++.+...|+
T Consensus 51 ~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~k~e~L~ 99 (107)
T 3a5t_A 51 SCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSSCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667776677777777777777777777776666555554444444433
No 221
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=24.72 E-value=2.1e+02 Score=25.15 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003075 95 MNKLLMEENDRLQKQVSHLVYENGYMR 121 (850)
Q Consensus 95 en~~l~ee~~~l~~e~~~L~~En~~Lk 121 (850)
+|+.|.++++.++.++..|+.||..|+
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444555555444
No 222
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=24.68 E-value=45 Score=35.01 Aligned_cols=38 Identities=16% Similarity=0.147 Sum_probs=34.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCC
Q 003075 91 KLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSAP 128 (850)
Q Consensus 91 ~l~aen~~l~ee~~~l~~e~~~L~~En~~Lk~el~~~~ 128 (850)
.+..+...+.+.|++|..++++++.|..+||+|++++.
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47788899999999999999999999999999999864
No 223
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=24.51 E-value=1.6e+02 Score=25.94 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003075 96 NKLLMEENDRLQKQVSHLVYENGYMR 121 (850)
Q Consensus 96 n~~l~ee~~~l~~e~~~L~~En~~Lk 121 (850)
|+.|.++.+.++.++..|+.||..|+
T Consensus 40 N~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 40 NEKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444
No 224
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=24.45 E-value=79 Score=23.58 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003075 100 MEENDRLQKQVSHLVYENGYMRQQLH 125 (850)
Q Consensus 100 ~ee~~~l~~e~~~L~~En~~Lk~el~ 125 (850)
-.||+++++++.+-..|.++||++..
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~ 31 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENK 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 45677788877777777788887754
No 225
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=23.38 E-value=2.1e+02 Score=25.22 Aligned_cols=38 Identities=26% Similarity=0.167 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHH
Q 003075 78 QRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVY 115 (850)
Q Consensus 78 rkq~~~~l~~~n~~l~aen~~l~ee~~~l~~e~~~L~~ 115 (850)
||+.....-.+|.+|....+.+.+++..++++.+.|+.
T Consensus 37 RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 37 RRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344555555555555555555555544443
No 226
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=23.19 E-value=91 Score=26.58 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=33.7
Q ss_pred cCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHH
Q 003075 23 RYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 77 (850)
Q Consensus 23 r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~K 77 (850)
.+++.|.+.|.-.|-+.. .-.++|..+ |++...|+.+...=|.|.|
T Consensus 37 ~L~~~~r~vl~l~~~~g~-----s~~eIA~~l----gis~~tV~~~l~ra~~~Lr 82 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW-----STAQIATDL----GIAEGTVKSRLHYAVRALR 82 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC-----CHHHHHHHH----TSCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHH----CcCHHHHHHHHHHHHHHHH
Confidence 478888888887664442 467889999 9999999988764444433
No 227
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=22.81 E-value=35 Score=31.65 Aligned_cols=36 Identities=28% Similarity=0.465 Sum_probs=24.4
Q ss_pred HHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHHHH
Q 003075 30 EALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEAS 83 (850)
Q Consensus 30 ~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krkq~~~ 83 (850)
...+-.|+.+|||+..--.+ |+ .|||.|||+++...
T Consensus 16 RiIkiLyQSNPyP~peGTRq-aR-----------------RNRRRRWR~RQrQI 51 (115)
T 2x7l_M 16 RLIKFLYQSNPPPNPEGTRQ-AR-----------------RNRRRRWRERQRQI 51 (115)
T ss_dssp HHHHHHHHSSCCCCCCCCTT-TH-----------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCCCCchh-hh-----------------HhHHHHHHHHHHHH
Confidence 45566699999998762211 11 59999999877653
No 228
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=22.56 E-value=3.6e+02 Score=30.50 Aligned_cols=30 Identities=20% Similarity=0.213 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 003075 97 KLLMEENDRLQKQVSHLVYENGYMRQQLHS 126 (850)
Q Consensus 97 ~~l~ee~~~l~~e~~~L~~En~~Lk~el~~ 126 (850)
+.+++..++.+++..+++.|++.+++|+..
T Consensus 547 ~~le~~~~~~~~~~~~l~~e~~~~~~~~~~ 576 (597)
T 3oja_B 547 IALEKQLDNKRAKQAELRQETSLKRQKVKQ 576 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 333333344444555666666666555543
No 229
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=21.89 E-value=1.6e+02 Score=20.92 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003075 97 KLLMEENDRLQKQVSHLVYENGYMRQQL 124 (850)
Q Consensus 97 ~~l~ee~~~l~~e~~~L~~En~~Lk~el 124 (850)
..+++|...+.+++..|+.|.+.|||-+
T Consensus 5 aalkqeiaalkkeiaalkfeiaalkqgy 32 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAALKQGY 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3467777778888888888888888754
No 230
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=20.67 E-value=2.6e+02 Score=27.65 Aligned_cols=6 Identities=17% Similarity=0.324 Sum_probs=3.6
Q ss_pred CCChhh
Q 003075 59 NIEPKQ 64 (850)
Q Consensus 59 gL~~rQ 64 (850)
+|++.|
T Consensus 67 nLT~EQ 72 (175)
T 3lay_A 67 PLTTEQ 72 (175)
T ss_dssp -CCHHH
T ss_pred cCCHHH
Confidence 777766
No 231
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=20.52 E-value=1e+02 Score=26.21 Aligned_cols=43 Identities=9% Similarity=0.198 Sum_probs=32.0
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhh
Q 003075 19 TKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQ 70 (850)
Q Consensus 19 rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQ 70 (850)
+++.+|+.++....-..+... ....++|+++ |+++..|.-|..
T Consensus 18 ~~~~~ys~e~k~~~v~~~~~g-----~s~~~iA~~~----gIs~sTl~rW~k 60 (87)
T 2elh_A 18 RPLRSLTPRDKIHAIQRIHDG-----ESKASVARDI----GVPESTLRGWCK 60 (87)
T ss_dssp SCCSSCCHHHHHHHHHHHHHT-----CCHHHHHHHH----TCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCC-----CCHHHHHHHH----CcCHHHHHHHHH
Confidence 456689999876665566433 2366889999 999999999974
No 232
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=20.06 E-value=2.8e+02 Score=22.13 Aligned_cols=36 Identities=28% Similarity=0.222 Sum_probs=22.5
Q ss_pred HHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 003075 85 LQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYM 120 (850)
Q Consensus 85 l~~~n~~l~aen~~l~ee~~~l~~e~~~L~~En~~L 120 (850)
++..+..+.+.|..|.+..++-..++..|+.|..+|
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666666666666666666666665554
Done!