Query 003076
Match_columns 850
No_of_seqs 336 out of 1842
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 16:33:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003076.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003076hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 2E-217 4E-222 1888.2 77.9 816 23-842 24-840 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 2E-153 5E-158 1298.8 42.7 631 24-738 15-648 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 3.6E-89 7.8E-94 749.0 19.4 297 35-340 1-318 (319)
4 COG1874 LacA Beta-galactosidas 100.0 5E-38 1.1E-42 367.0 13.8 289 29-326 1-332 (673)
5 KOG4729 Galactoside-binding le 99.8 4.4E-21 9.6E-26 198.5 8.5 91 756-847 40-135 (265)
6 PF02449 Glyco_hydro_42: Beta- 99.8 6.3E-20 1.4E-24 206.5 15.2 262 50-342 2-372 (374)
7 PF02140 Gal_Lectin: Galactose 99.8 5.1E-20 1.1E-24 162.9 5.6 76 764-841 1-80 (80)
8 PF02836 Glyco_hydro_2_C: Glyc 99.2 9.2E-10 2E-14 120.5 19.9 153 29-222 1-159 (298)
9 PRK10150 beta-D-glucuronidase; 99.0 4.5E-08 9.7E-13 117.4 25.9 162 24-220 273-448 (604)
10 PF00150 Cellulase: Cellulase 98.8 5.9E-08 1.3E-12 103.8 13.9 161 39-221 4-172 (281)
11 PF13364 BetaGal_dom4_5: Beta- 98.8 1.2E-08 2.6E-13 96.1 6.7 68 620-712 34-104 (111)
12 PRK10340 ebgA cryptic beta-D-g 98.7 2.4E-07 5.2E-12 116.8 19.1 263 23-341 314-602 (1021)
13 PRK09525 lacZ beta-D-galactosi 98.7 2.9E-07 6.2E-12 116.0 19.6 151 25-220 332-488 (1027)
14 COG3250 LacZ Beta-galactosidas 98.6 9.5E-07 2.1E-11 107.9 18.0 139 23-208 280-424 (808)
15 PF13364 BetaGal_dom4_5: Beta- 98.1 1.1E-05 2.5E-10 76.0 9.2 84 460-550 24-110 (111)
16 PF02837 Glyco_hydro_2_N: Glyc 98.1 2E-05 4.2E-10 78.7 10.4 98 467-570 64-163 (167)
17 smart00633 Glyco_10 Glycosyl h 98.0 2E-05 4.4E-10 84.7 8.8 116 81-221 3-125 (254)
18 PF03198 Glyco_hydro_72: Gluca 97.9 0.00014 3E-09 79.6 14.2 157 23-217 5-179 (314)
19 PLN02705 beta-amylase 97.8 5E-05 1.1E-09 88.1 9.3 81 56-142 266-358 (681)
20 PLN02905 beta-amylase 97.8 7.3E-05 1.6E-09 87.0 9.6 113 56-182 284-432 (702)
21 PLN02801 beta-amylase 97.8 9.3E-05 2E-09 84.8 9.6 80 56-141 35-126 (517)
22 PLN00197 beta-amylase; Provisi 97.7 0.00012 2.5E-09 84.7 9.6 81 56-142 125-217 (573)
23 TIGR03356 BGL beta-galactosida 97.7 4.6E-05 9.9E-10 88.0 5.7 97 58-166 54-151 (427)
24 PLN02803 beta-amylase 97.7 0.00015 3.2E-09 83.6 9.5 81 56-142 105-197 (548)
25 PLN02161 beta-amylase 97.6 0.00027 5.8E-09 81.1 9.8 81 56-142 115-207 (531)
26 PF13204 DUF4038: Protein of u 97.5 0.00028 6.1E-09 77.5 9.3 225 33-287 2-274 (289)
27 PF01373 Glyco_hydro_14: Glyco 97.3 0.00033 7.1E-09 79.1 5.9 112 59-182 17-152 (402)
28 COG3693 XynA Beta-1,4-xylanase 97.1 0.0021 4.5E-08 70.3 9.3 133 67-222 55-194 (345)
29 PF00331 Glyco_hydro_10: Glyco 96.9 0.0011 2.4E-08 73.8 5.9 157 45-222 11-179 (320)
30 PF00232 Glyco_hydro_1: Glycos 96.7 0.0019 4.2E-08 75.3 5.8 98 57-166 57-156 (455)
31 PF14488 DUF4434: Domain of un 96.4 0.053 1.2E-06 54.9 13.0 135 53-218 15-158 (166)
32 PRK10150 beta-D-glucuronidase; 96.4 0.018 3.9E-07 69.6 11.0 100 468-573 62-179 (604)
33 PF07745 Glyco_hydro_53: Glyco 96.3 0.01 2.2E-07 66.4 7.8 104 61-187 27-136 (332)
34 PRK09852 cryptic 6-phospho-bet 96.2 0.011 2.3E-07 69.5 8.0 96 58-165 71-169 (474)
35 PRK15014 6-phospho-beta-glucos 96.2 0.012 2.7E-07 69.0 8.0 96 58-165 69-167 (477)
36 PF02837 Glyco_hydro_2_N: Glyc 96.1 0.011 2.5E-07 58.8 6.3 65 620-711 67-135 (167)
37 COG2730 BglC Endoglucanase [Ca 96.1 0.017 3.6E-07 66.6 8.4 118 56-188 66-193 (407)
38 PLN02998 beta-glucosidase 96.0 0.0071 1.5E-07 71.3 4.8 101 57-165 81-183 (497)
39 PLN02814 beta-glucosidase 95.8 0.0092 2E-07 70.5 4.7 101 57-165 76-178 (504)
40 PRK10340 ebgA cryptic beta-D-g 95.8 0.033 7.2E-07 71.1 9.9 94 471-573 109-206 (1021)
41 PRK09593 arb 6-phospho-beta-gl 95.7 0.014 3E-07 68.6 5.7 101 57-165 72-175 (478)
42 PRK13511 6-phospho-beta-galact 95.6 0.013 2.8E-07 68.7 5.2 96 58-165 54-150 (469)
43 PRK09589 celA 6-phospho-beta-g 95.6 0.014 3E-07 68.5 5.3 101 57-165 66-169 (476)
44 PLN02849 beta-glucosidase 95.5 0.014 3E-07 69.0 4.9 101 57-165 78-180 (503)
45 TIGR01233 lacG 6-phospho-beta- 95.5 0.018 3.8E-07 67.5 5.4 96 58-165 53-149 (467)
46 PRK09525 lacZ beta-D-galactosi 95.3 0.066 1.4E-06 68.5 10.1 93 471-572 120-217 (1027)
47 COG3867 Arabinogalactan endo-1 95.1 0.1 2.2E-06 56.7 9.0 110 60-187 65-182 (403)
48 PF14871 GHL6: Hypothetical gl 95.0 0.13 2.8E-06 50.2 8.9 98 62-164 4-123 (132)
49 PRK09936 hypothetical protein; 94.1 0.21 4.4E-06 54.6 8.9 57 53-116 33-91 (296)
50 PF02638 DUF187: Glycosyl hydr 93.1 0.46 1E-05 52.9 9.8 117 56-184 17-162 (311)
51 COG2723 BglB Beta-glucosidase/ 93.1 0.11 2.4E-06 60.2 4.9 97 57-165 58-157 (460)
52 smart00812 Alpha_L_fucos Alpha 92.2 19 0.00041 41.5 21.4 246 50-349 76-338 (384)
53 PF02055 Glyco_hydro_30: O-Gly 91.6 2.1 4.5E-05 50.8 13.1 276 41-343 74-425 (496)
54 TIGR01515 branching_enzym alph 91.3 2.2 4.8E-05 52.0 13.3 56 61-117 159-226 (613)
55 COG1649 Uncharacterized protei 91.1 1.1 2.3E-05 51.7 9.7 122 56-187 62-210 (418)
56 smart00642 Aamy Alpha-amylase 91.1 0.57 1.2E-05 47.4 6.8 68 57-124 18-97 (166)
57 COG3934 Endo-beta-mannanase [C 89.4 0.33 7.2E-06 56.0 3.8 157 35-209 3-168 (587)
58 TIGR00542 hxl6Piso_put hexulos 88.5 5.3 0.00011 43.3 12.3 131 57-215 15-149 (279)
59 PRK14706 glycogen branching en 88.3 6.1 0.00013 48.5 13.8 54 64-117 174-237 (639)
60 PRK05402 glycogen branching en 87.6 5.4 0.00012 49.7 13.1 54 64-117 272-335 (726)
61 KOG2230 Predicted beta-mannosi 87.0 5.9 0.00013 46.9 11.8 150 33-222 327-494 (867)
62 PRK09441 cytoplasmic alpha-amy 86.7 0.93 2E-05 53.4 5.5 61 57-117 18-101 (479)
63 PRK12568 glycogen branching en 86.2 13 0.00028 46.2 15.0 56 62-119 274-341 (730)
64 PF14307 Glyco_tran_WbsX: Glyc 85.3 9.8 0.00021 43.0 12.6 140 55-221 55-197 (345)
65 PF01229 Glyco_hydro_39: Glyco 85.2 2.6 5.7E-05 49.8 8.3 146 47-208 28-187 (486)
66 PF13200 DUF4015: Putative gly 85.0 3.1 6.6E-05 46.6 8.2 112 56-168 11-137 (316)
67 PRK13210 putative L-xylulose 5 84.1 7.4 0.00016 42.0 10.6 131 59-215 17-149 (284)
68 PF05913 DUF871: Bacterial pro 83.7 2.1 4.6E-05 48.6 6.3 71 46-122 2-72 (357)
69 PLN02447 1,4-alpha-glucan-bran 83.4 2.3 5E-05 52.7 6.9 62 57-119 250-322 (758)
70 PRK14705 glycogen branching en 83.1 19 0.00042 47.2 15.1 56 62-117 770-835 (1224)
71 PF11875 DUF3395: Domain of un 82.9 1.7 3.7E-05 43.5 4.6 67 775-843 55-135 (151)
72 PF00128 Alpha-amylase: Alpha 82.5 1.3 2.7E-05 47.7 3.8 57 61-117 7-72 (316)
73 PF01261 AP_endonuc_2: Xylose 79.9 2.9 6.3E-05 42.3 5.2 125 64-215 1-128 (213)
74 TIGR02402 trehalose_TreZ malto 79.8 2.9 6.3E-05 50.2 5.9 54 61-117 114-180 (542)
75 cd00019 AP2Ec AP endonuclease 79.5 18 0.00038 39.2 11.5 97 58-183 10-107 (279)
76 PRK01060 endonuclease IV; Prov 79.3 32 0.0007 37.1 13.5 94 60-181 14-109 (281)
77 TIGR01531 glyc_debranch glycog 78.6 8 0.00017 50.7 9.4 113 35-153 104-236 (1464)
78 TIGR03234 OH-pyruv-isom hydrox 76.8 27 0.00058 37.2 11.7 43 59-115 15-57 (254)
79 cd06593 GH31_xylosidase_YicI Y 76.5 6.2 0.00013 43.7 7.0 74 50-123 13-92 (308)
80 PRK13209 L-xylulose 5-phosphat 76.2 17 0.00036 39.4 10.1 125 59-215 22-154 (283)
81 PRK10785 maltodextrin glucosid 75.2 5.2 0.00011 48.6 6.4 58 60-117 181-246 (598)
82 PF11324 DUF3126: Protein of u 75.0 5.6 0.00012 34.0 4.6 33 499-531 24-58 (63)
83 PF02065 Melibiase: Melibiase; 74.3 39 0.00085 39.1 12.8 165 50-223 50-236 (394)
84 PRK10933 trehalose-6-phosphate 74.1 5.8 0.00012 47.8 6.3 56 59-117 34-101 (551)
85 PLN02960 alpha-amylase 73.8 6 0.00013 49.7 6.4 57 61-117 420-486 (897)
86 PRK09505 malS alpha-amylase; R 73.8 5.7 0.00012 49.0 6.2 58 60-117 232-312 (683)
87 PRK09856 fructoselysine 3-epim 73.3 43 0.00094 35.9 12.4 129 59-215 14-145 (275)
88 TIGR02104 pulA_typeI pullulana 72.7 5.9 0.00013 48.2 6.0 55 62-117 168-249 (605)
89 TIGR02456 treS_nterm trehalose 72.3 7 0.00015 46.9 6.4 60 56-117 26-96 (539)
90 PRK12313 glycogen branching en 72.2 6.4 0.00014 48.2 6.2 54 64-117 177-240 (633)
91 TIGR02403 trehalose_treC alpha 71.8 5.7 0.00012 47.7 5.5 59 57-117 26-95 (543)
92 TIGR02631 xylA_Arthro xylose i 71.7 55 0.0012 37.7 13.2 89 58-165 32-125 (382)
93 PRK14582 pgaB outer membrane N 71.6 23 0.0005 43.7 10.6 110 58-186 334-468 (671)
94 PRK09997 hydroxypyruvate isome 69.6 81 0.0018 33.7 13.4 50 49-115 9-58 (258)
95 cd06595 GH31_xylosidase_XylS-l 68.7 51 0.0011 36.3 11.8 70 50-119 14-96 (292)
96 PF13199 Glyco_hydro_66: Glyco 67.6 9.9 0.00021 45.8 6.2 81 56-136 116-211 (559)
97 PF02679 ComA: (2R)-phospho-3- 67.0 7.2 0.00016 42.1 4.5 52 57-118 83-134 (244)
98 PLN02361 alpha-amylase 65.9 12 0.00026 43.4 6.3 57 61-117 32-96 (401)
99 PF03659 Glyco_hydro_71: Glyco 65.2 29 0.00062 40.1 9.2 53 56-117 15-67 (386)
100 KOG4729 Galactoside-binding le 64.4 7 0.00015 42.2 3.7 86 757-844 140-233 (265)
101 cd06589 GH31 The enzymes of gl 63.9 25 0.00055 38.1 8.1 71 50-121 13-90 (265)
102 PRK14510 putative bifunctional 63.2 10 0.00022 50.0 5.6 56 62-117 191-267 (1221)
103 PRK13398 3-deoxy-7-phosphohept 62.3 34 0.00074 37.4 8.7 76 35-117 20-98 (266)
104 PRK09989 hypothetical protein; 62.1 63 0.0014 34.5 10.7 42 60-115 17-58 (258)
105 smart00518 AP2Ec AP endonuclea 61.6 1.1E+02 0.0023 32.9 12.4 101 48-181 3-104 (273)
106 KOG0626 Beta-glucosidase, lact 61.5 14 0.00031 43.8 5.8 113 59-181 92-208 (524)
107 cd04908 ACT_Bt0572_1 N-termina 61.2 28 0.00061 29.2 6.2 55 57-115 12-66 (66)
108 PF14683 CBM-like: Polysacchar 60.8 8.2 0.00018 39.3 3.4 60 646-716 93-153 (167)
109 COG3623 SgaU Putative L-xylulo 60.8 69 0.0015 34.5 10.1 22 58-79 18-39 (287)
110 TIGR02401 trehalose_TreY malto 59.9 18 0.00039 45.4 6.7 64 56-119 14-87 (825)
111 cd06591 GH31_xylosidase_XylS X 59.6 20 0.00044 40.0 6.6 71 50-121 13-90 (319)
112 PF08531 Bac_rhamnosid_N: Alph 59.0 27 0.00059 35.4 6.8 56 494-550 6-68 (172)
113 cd06592 GH31_glucosidase_KIAA1 58.3 31 0.00067 38.3 7.7 68 53-123 25-96 (303)
114 TIGR02100 glgX_debranch glycog 58.3 14 0.00031 45.7 5.5 55 63-117 189-265 (688)
115 PF06832 BiPBP_C: Penicillin-B 58.2 15 0.00032 33.0 4.2 50 494-551 34-84 (89)
116 PF01791 DeoC: DeoC/LacD famil 57.6 4.3 9.3E-05 43.2 0.8 53 61-116 79-131 (236)
117 PRK08673 3-deoxy-7-phosphohept 57.4 33 0.00071 38.9 7.7 76 35-117 86-164 (335)
118 TIGR03849 arch_ComA phosphosul 57.3 21 0.00045 38.5 5.8 53 57-119 70-122 (237)
119 PLN00196 alpha-amylase; Provis 56.9 22 0.00047 41.6 6.4 57 61-117 47-112 (428)
120 COG0296 GlgB 1,4-alpha-glucan 56.7 22 0.00048 43.4 6.5 58 56-116 163-233 (628)
121 cd06602 GH31_MGAM_SI_GAA This 55.6 25 0.00055 39.7 6.5 73 50-123 13-92 (339)
122 PRK14511 maltooligosyl trehalo 55.4 24 0.00053 44.6 6.8 62 55-120 17-92 (879)
123 cd06598 GH31_transferase_CtsZ 54.9 29 0.00063 38.7 6.8 67 56-122 22-95 (317)
124 PRK14507 putative bifunctional 54.6 24 0.00051 47.7 6.8 60 56-119 756-829 (1693)
125 COG1306 Uncharacterized conser 54.1 30 0.00066 38.3 6.4 62 56-117 75-144 (400)
126 cd06603 GH31_GANC_GANAB_alpha 53.6 30 0.00065 39.0 6.7 74 50-124 13-91 (339)
127 PF08308 PEGA: PEGA domain; I 53.6 11 0.00024 32.1 2.5 47 495-553 3-49 (71)
128 PF01261 AP_endonuc_2: Xylose 53.4 63 0.0014 32.5 8.5 103 58-189 27-137 (213)
129 cd06565 GH20_GcnA-like Glycosy 53.3 68 0.0015 35.6 9.3 60 56-118 15-81 (301)
130 PRK03705 glycogen debranching 52.9 21 0.00045 44.0 5.6 55 63-117 184-262 (658)
131 cd06600 GH31_MGAM-like This fa 51.5 32 0.0007 38.4 6.4 72 50-122 13-89 (317)
132 TIGR02102 pullulan_Gpos pullul 51.3 23 0.0005 46.1 5.9 21 97-117 555-575 (1111)
133 cd06601 GH31_lyase_GLase GLase 49.7 83 0.0018 35.6 9.4 72 50-122 13-89 (332)
134 cd06599 GH31_glycosidase_Aec37 49.4 45 0.00098 37.2 7.2 66 57-122 28-98 (317)
135 COG3589 Uncharacterized conser 49.2 37 0.0008 38.3 6.2 72 46-124 4-76 (360)
136 TIGR02103 pullul_strch alpha-1 49.0 28 0.0006 44.4 5.9 21 97-117 404-424 (898)
137 cd06604 GH31_glucosidase_II_Ma 49.0 41 0.00088 37.9 6.8 73 50-123 13-90 (339)
138 PF01055 Glyco_hydro_31: Glyco 48.7 32 0.0007 39.9 6.2 70 56-126 41-112 (441)
139 cd06416 GH25_Lys1-like Lys-1 i 48.4 41 0.00088 34.7 6.2 87 48-137 56-157 (196)
140 cd06547 GH85_ENGase Endo-beta- 47.7 35 0.00075 38.7 6.0 116 74-220 32-149 (339)
141 PF01120 Alpha_L_fucos: Alpha- 45.2 5E+02 0.011 29.4 18.5 53 268-346 289-342 (346)
142 cd06597 GH31_transferase_CtsY 43.6 56 0.0012 37.0 6.8 73 50-122 13-110 (340)
143 cd06568 GH20_SpHex_like A subg 43.4 52 0.0011 37.1 6.5 71 34-117 4-95 (329)
144 KOG3833 Uncharacterized conser 41.8 26 0.00056 39.0 3.5 53 59-117 444-499 (505)
145 KOG2024 Beta-Glucuronidase GUS 40.8 43 0.00094 36.5 5.0 55 459-514 73-130 (297)
146 PF14587 Glyco_hydr_30_2: O-Gl 40.5 1.5E+02 0.0033 34.2 9.6 121 86-221 93-226 (384)
147 PRK12677 xylose isomerase; Pro 40.0 1.9E+02 0.0042 33.3 10.6 89 59-165 32-124 (384)
148 COG1523 PulA Type II secretory 39.7 39 0.00085 41.9 5.1 55 63-117 205-285 (697)
149 cd06564 GH20_DspB_LnbB-like Gl 39.5 99 0.0021 34.7 8.0 62 51-117 12-102 (326)
150 cd06545 GH18_3CO4_chitinase Th 39.3 1.2E+02 0.0026 32.5 8.3 96 88-212 36-132 (253)
151 PLN02877 alpha-amylase/limit d 38.7 52 0.0011 42.3 6.0 21 97-117 466-486 (970)
152 cd06563 GH20_chitobiase-like T 37.6 1.4E+02 0.0031 33.9 8.9 60 55-117 15-106 (357)
153 PF14701 hDGE_amylase: glucano 37.5 1.2E+02 0.0026 35.5 8.3 109 51-165 13-143 (423)
154 cd02742 GH20_hexosaminidase Be 37.3 1.1E+02 0.0024 33.9 7.9 60 55-117 13-92 (303)
155 TIGR00677 fadh2_euk methylenet 37.1 1.2E+02 0.0026 33.5 8.0 109 44-166 130-251 (281)
156 cd06562 GH20_HexA_HexB-like Be 35.5 1.9E+02 0.0042 32.8 9.5 63 55-117 15-90 (348)
157 COG5520 O-Glycosyl hydrolase [ 35.4 7.5E+02 0.016 28.6 14.9 86 106-212 111-206 (433)
158 PRK00042 tpiA triosephosphate 35.2 65 0.0014 35.0 5.4 49 64-118 79-127 (250)
159 PF12876 Cellulase-like: Sugar 34.7 70 0.0015 28.6 4.8 47 173-219 7-62 (88)
160 cd00311 TIM Triosephosphate is 34.3 71 0.0015 34.5 5.5 49 64-118 77-125 (242)
161 PF02228 Gag_p19: Major core p 34.0 15 0.00032 32.7 0.2 37 56-109 20-56 (92)
162 PRK09267 flavodoxin FldA; Vali 34.0 2.7E+02 0.0059 27.7 9.4 74 38-114 44-117 (169)
163 COG0366 AmyA Glycosidases [Car 33.8 61 0.0013 37.7 5.4 56 62-117 33-97 (505)
164 smart00854 PGA_cap Bacterial c 32.9 3E+02 0.0065 29.2 10.1 50 52-114 58-107 (239)
165 TIGR02455 TreS_stutzeri trehal 32.8 97 0.0021 38.1 6.8 75 56-134 76-175 (688)
166 PLN02784 alpha-amylase 32.7 85 0.0018 39.8 6.4 57 61-117 524-588 (894)
167 cd08560 GDPD_EcGlpQ_like_1 Gly 32.2 1.4E+02 0.0029 34.3 7.6 53 59-117 246-298 (356)
168 cd06570 GH20_chitobiase-like_1 32.2 1E+02 0.0022 34.6 6.4 60 55-117 15-88 (311)
169 TIGR01361 DAHP_synth_Bsub phos 31.8 1.3E+02 0.0028 32.8 7.1 82 27-117 12-96 (260)
170 PF07691 PA14: PA14 domain; I 31.7 1.7E+02 0.0037 27.8 7.3 70 472-549 47-122 (145)
171 PRK13209 L-xylulose 5-phosphat 31.4 2.4E+02 0.0051 30.4 9.1 105 54-187 53-161 (283)
172 TIGR00676 fadh2 5,10-methylene 30.5 2.1E+02 0.0045 31.3 8.5 109 43-165 125-246 (272)
173 TIGR01698 PUNP purine nucleoti 30.3 78 0.0017 34.2 5.0 40 37-76 47-87 (237)
174 PF14307 Glyco_tran_WbsX: Glyc 30.1 92 0.002 35.3 5.8 43 32-77 150-194 (345)
175 TIGR00433 bioB biotin syntheta 29.6 75 0.0016 34.6 4.9 52 61-115 123-176 (296)
176 cd01299 Met_dep_hydrolase_A Me 29.5 1.2E+02 0.0026 33.5 6.6 61 56-117 118-180 (342)
177 PRK10076 pyruvate formate lyas 29.5 1.8E+02 0.0039 30.8 7.5 126 56-215 52-209 (213)
178 PRK09856 fructoselysine 3-epim 29.4 73 0.0016 34.2 4.7 56 58-117 90-149 (275)
179 TIGR00419 tim triosephosphate 29.2 1E+02 0.0022 32.5 5.6 44 64-117 74-117 (205)
180 PF04914 DltD_C: DltD C-termin 29.2 45 0.00097 32.7 2.7 53 97-167 36-88 (130)
181 KOG0496 Beta-galactosidase [Ca 28.1 16 0.00034 44.4 -0.8 58 766-823 332-389 (649)
182 KOG1065 Maltase glucoamylase a 27.6 1E+02 0.0022 38.8 5.8 74 50-126 300-380 (805)
183 COG2884 FtsE Predicted ATPase 27.4 55 0.0012 34.5 3.1 16 645-660 54-69 (223)
184 KOG3625 Alpha amylase [Carbohy 26.9 56 0.0012 41.3 3.4 76 56-140 140-235 (1521)
185 KOG0259 Tyrosine aminotransfer 26.8 67 0.0014 37.0 3.8 84 29-116 153-238 (447)
186 PF00728 Glyco_hydro_20: Glyco 26.1 1.2E+02 0.0026 33.8 5.9 59 56-117 16-93 (351)
187 smart00481 POLIIIAc DNA polyme 26.0 2E+02 0.0044 24.0 5.9 43 60-115 17-59 (67)
188 PRK15492 triosephosphate isome 25.8 1.2E+02 0.0027 33.1 5.6 49 64-118 87-135 (260)
189 PRK06703 flavodoxin; Provision 25.6 3.5E+02 0.0076 26.3 8.4 101 38-165 46-148 (151)
190 cd06418 GH25_BacA-like BacA is 25.6 2.1E+02 0.0045 30.3 7.1 90 56-167 50-140 (212)
191 PRK13210 putative L-xylulose 5 25.5 1E+02 0.0022 33.1 5.0 60 58-118 94-154 (284)
192 PRK14566 triosephosphate isome 25.5 1.4E+02 0.0029 32.8 5.8 49 64-118 88-136 (260)
193 COG1891 Uncharacterized protei 25.3 22 0.00048 36.4 -0.2 66 43-116 116-186 (235)
194 cd07381 MPP_CapA CapA and rela 25.1 4.6E+02 0.0099 27.6 9.8 49 53-114 63-111 (239)
195 PRK12331 oxaloacetate decarbox 25.0 1.5E+02 0.0032 35.1 6.5 56 50-117 88-143 (448)
196 cd06569 GH20_Sm-chitobiase-lik 25.0 1.6E+02 0.0034 34.8 6.7 73 32-117 6-117 (445)
197 cd04882 ACT_Bt0572_2 C-termina 25.0 1.5E+02 0.0032 24.0 4.8 54 58-113 11-64 (65)
198 PTZ00372 endonuclease 4-like p 24.9 3.9E+02 0.0084 31.3 9.7 83 34-118 149-240 (413)
199 cd00544 CobU Adenosylcobinamid 24.9 4.4E+02 0.0096 26.7 9.1 49 153-209 101-149 (169)
200 PLN02763 hydrolase, hydrolyzin 24.8 1.9E+02 0.0042 37.4 7.7 74 50-124 190-268 (978)
201 PRK09432 metF 5,10-methylenete 24.7 1.5E+02 0.0033 32.9 6.2 88 63-166 168-266 (296)
202 PRK10658 putative alpha-glucos 24.6 1.9E+02 0.0042 35.9 7.6 66 56-123 281-351 (665)
203 PF07172 GRP: Glycine rich pro 24.6 52 0.0011 30.5 2.1 19 5-23 3-21 (95)
204 PRK09875 putative hydrolase; P 24.1 2.1E+02 0.0046 31.8 7.1 89 28-136 7-95 (292)
205 PF13380 CoA_binding_2: CoA bi 23.9 1.7E+02 0.0037 27.7 5.5 70 28-114 30-106 (116)
206 PRK14565 triosephosphate isome 23.7 1.4E+02 0.003 32.3 5.5 49 64-118 78-126 (237)
207 PLN02429 triosephosphate isome 23.5 1.4E+02 0.0029 33.7 5.5 49 64-118 140-188 (315)
208 cd06594 GH31_glucosidase_YihQ 23.4 2.7E+02 0.0058 31.2 7.9 68 56-123 21-97 (317)
209 PRK09997 hydroxypyruvate isome 23.3 1.1E+02 0.0025 32.6 4.8 59 58-117 85-144 (258)
210 PRK08645 bifunctional homocyst 23.1 3.1E+02 0.0067 33.7 8.9 109 41-165 461-578 (612)
211 PRK14567 triosephosphate isome 23.0 1.5E+02 0.0033 32.3 5.6 49 64-118 78-126 (253)
212 cd06525 GH25_Lyc-like Lyc mura 22.6 61 0.0013 33.0 2.4 42 97-138 103-148 (184)
213 PLN03059 beta-galactosidase; P 22.5 3.2E+02 0.007 34.8 8.9 42 620-661 469-517 (840)
214 PLN02561 triosephosphate isome 21.7 1.6E+02 0.0034 32.1 5.4 49 64-118 81-129 (253)
215 cd00537 MTHFR Methylenetetrahy 21.7 2.9E+02 0.0064 29.9 7.6 104 49-166 138-250 (274)
216 PF08531 Bac_rhamnosid_N: Alph 21.7 1.2E+02 0.0026 30.8 4.2 22 639-660 7-28 (172)
217 PLN02231 alanine transaminase 21.6 2E+02 0.0044 34.6 6.9 60 53-116 251-310 (534)
218 COG1306 Uncharacterized conser 21.6 2E+02 0.0043 32.2 6.0 123 35-174 161-303 (400)
219 COG1735 Php Predicted metal-de 21.3 3.6E+02 0.0078 30.3 8.0 61 61-138 51-111 (316)
220 cd07937 DRE_TIM_PC_TC_5S Pyruv 21.2 2.2E+02 0.0048 31.1 6.5 50 55-116 88-137 (275)
221 cd06415 GH25_Cpl1-like Cpl-1 l 21.2 3E+02 0.0064 28.4 7.2 43 97-139 108-157 (196)
222 COG0149 TpiA Triosephosphate i 20.9 1.7E+02 0.0038 31.8 5.5 72 40-118 58-129 (251)
223 TIGR02635 RhaI_grampos L-rhamn 20.9 1.2E+03 0.025 27.1 12.5 159 25-217 9-173 (378)
224 PTZ00333 triosephosphate isome 20.8 1.8E+02 0.0038 31.8 5.6 48 65-118 83-130 (255)
225 PF10566 Glyco_hydro_97: Glyco 20.2 2.8E+02 0.0061 30.6 7.0 61 55-116 29-92 (273)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=1.6e-217 Score=1888.17 Aligned_cols=816 Identities=65% Similarity=1.192 Sum_probs=755.8
Q ss_pred cccceeEEEecccEEECCeEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHH
Q 003076 23 LIQCSTVTYDRKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRF 102 (850)
Q Consensus 23 ~~~~~~v~~~~~~~~idG~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~f 102 (850)
.-...+|++|+++|+|||||++|+||||||||+||++|+|+|+||||+|||||+||||||+|||+||+|||+|++||++|
T Consensus 24 ~~~~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~F 103 (840)
T PLN03059 24 SHGSASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKF 103 (840)
T ss_pred ccceeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHH
Confidence 34466899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCcEEEEecCceeccccCCCCCCcccccCCCeEeecCChhhHHHHHHHHHHHHHHHhccccccccCCceEEecc
Q 003076 103 IKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQI 182 (850)
Q Consensus 103 l~la~~~gL~vilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 182 (850)
|++|+|+||||||||||||||||++||||.||+++|+|++||+||+|+++|++|+++|+++|+++++++++||||||+||
T Consensus 104 l~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQI 183 (840)
T PLN03059 104 IKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQI 183 (840)
T ss_pred HHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred ccccCCCccccCcchHHHHHHHHHHHhcCCCCcceeeeCCCCCCCccccCCCCcccccCCCCCCCCCeEeeeeccccccc
Q 003076 183 ENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPWVMCKEDDAPDPVINSCNGFYCDAFSPNKPYKPTLWTEAWSGWFTE 262 (850)
Q Consensus 183 ENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~P~~~~E~~~Gwf~~ 262 (850)
|||||++...++.+|++||+||+++++++|++|||+||++.++++++++|+||.+|+.|.+.++.+|+|++|||+|||++
T Consensus 184 ENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~~~f~~~~~~~P~m~tE~w~GWf~~ 263 (840)
T PLN03059 184 ENEYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPNKDYKPKMWTEAWTGWYTE 263 (840)
T ss_pred cccccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchhhhcccCCCCCCcEEeccCchhHhh
Confidence 99999986667779999999999999999999999999998788899999999999888887787999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhCCceeeeeeeecCCCCCCCCCCCcccccCcCCCCCCCCCCCCchhHHHHHHHHHHHH
Q 003076 263 FGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAIK 342 (850)
Q Consensus 263 wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~TSYDydApl~E~G~~~t~ky~~lr~l~~~~~ 342 (850)
||++++.|+++|++.+++++|++|+|++||||||||||||||||+++++|||||||||+|+|++++|||.+||++|.+++
T Consensus 264 wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G~~t~pKy~~lr~l~~~~~ 343 (840)
T PLN03059 264 FGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPREPKWGHLRDLHKAIK 343 (840)
T ss_pred cCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCccccccCcchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999889999999999999999999999999999999999996679999999999999
Q ss_pred hhhccccCCCCccccCCCccceeeeecCccceeeeeeccCCccceEEEeCCeeeecCCcceeecCCCCceeeccceeeee
Q 003076 343 LCEYALVSSDPTVTSLGTYQQAHVFSAGQQKCAAFLSNYNTKSAARVTFNGRQYNLPPWSISILPDCKNVVFNTAKVAVQ 422 (850)
Q Consensus 343 ~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~fl~n~~~~~~~~v~~~~~~~~~p~~sv~i~~~~~~~~~~t~~v~~~ 422 (850)
.++++|+..+|....+|+.+++++|.... .|++|+.|++.+...+|+|+|++|.||+|||+|||||+.++|+|++++.|
T Consensus 344 ~~~~~l~~~~p~~~~lg~~~ea~~y~~~~-~caaFl~n~~~~~~~~v~f~g~~y~lp~~Svsilpd~~~~lfnta~v~~q 422 (840)
T PLN03059 344 LCEPALVSVDPTVTSLGSNQEAHVFKSKS-ACAAFLANYDTKYSVKVTFGNGQYDLPPWSVSILPDCKTAVFNTARLGAQ 422 (840)
T ss_pred hcCccccCCCCceeccCCceeEEEccCcc-chhhheeccCCCCceeEEECCcccccCccceeecccccceeeeccccccc
Confidence 88888887777777899999999998666 79999999998889999999999999999999999999999999999888
Q ss_pred ccccccccccccccccccccccccccCCCCcccccchhhhhcCCCCCccEEEEEEEeccCCCcccccCCCCceeeeCCcc
Q 003076 423 HTKMQMLPTGSKLLSWETYDEDISSLGESSTLTAIGLLEQINITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAG 502 (850)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~mEql~~t~d~~GYl~Y~T~i~~~~~~~~~~~g~~~~L~v~~~~ 502 (850)
++.++..+. ...+.|+++.|++.+...+.|++++.++||+++|+|.+||+||+|+|.....+..+|++.+++|+|.+++
T Consensus 423 ~~~~~~~~~-~~~~~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~~~~~~~~~~~~~L~v~~~~ 501 (840)
T PLN03059 423 SSQMKMNPV-GSTFSWQSYNEETASAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSAG 501 (840)
T ss_pred cceeecccc-cccccceeecccccccccCCCcchhhHHHhhcccCCCCceEEEEEEEeecCCccccccCCCceEEEcccC
Confidence 666544322 2456899999995543244678889999999999999999999999988766644577888999999999
Q ss_pred cEEEEEECCEEEEEEEcccccceeEEeecccccCCCCeEEEEEecCCcccccCCCCccccceeccEEEccccCCCccCcc
Q 003076 503 HAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTW 582 (850)
Q Consensus 503 D~a~VfVng~~vG~~~~~~~~~~~~~~~~i~l~~g~~~L~ILven~GrvNyG~~~~~~~KGI~g~V~l~g~~~~~~~L~~ 582 (850)
|++||||||+++|++++...+..+.++.+|+++.|.|+|+||||||||+|||++|+++.|||+|+|+|+|+++++++|++
T Consensus 502 d~~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le~~~kGI~g~V~i~g~~~g~~dls~ 581 (840)
T PLN03059 502 HALHVFINGQLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFETWNAGVLGPVTLKGLNEGTRDLSG 581 (840)
T ss_pred cEEEEEECCEEEEEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCccCcccccccccccccEEEecccCCceeccc
Confidence 99999999999999998877777888888889999999999999999999999999999999999999998888889998
Q ss_pred CCceEecCCccccccccCCCCCCCCcccCCCccccccCCceEEEEEEeCCCCCCceEEeeCCCCceeEEECCeeeeeccc
Q 003076 583 QKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPTGNEPLALDLRSMGKGQVWINGQSIGRYWM 662 (850)
Q Consensus 583 ~~W~~~~~l~~e~~~~~~~~~~~~~~w~~~~~~~~~~~~p~wYk~~F~~p~~~d~~~Ldl~g~gKG~vwVNG~nLGRYW~ 662 (850)
+.|.|+++|+||.++|+..++...+.|.+....+. .+||+|||++|++|++.|||||||+|||||+|||||+||||||+
T Consensus 582 ~~W~y~lgL~GE~~~i~~~~~~~~~~W~~~~~~~~-~~p~twYK~~Fd~p~g~Dpv~LDm~gmGKG~aWVNG~nIGRYW~ 660 (840)
T PLN03059 582 WKWSYKIGLKGEALSLHTITGSSSVEWVEGSLLAQ-KQPLTWYKTTFDAPGGNDPLALDMSSMGKGQIWINGQSIGRHWP 660 (840)
T ss_pred CccccccCccceeccccccCCCCCccccccccccC-CCCceEEEEEEeCCCCCCCEEEecccCCCeeEEECCcccccccc
Confidence 89999999999999998876566788976643333 56799999999999999999999999999999999999999998
Q ss_pred ccc-cCCCCccccCCCcCCccccCCCCCcceeeeecCcccccCCccEEEEEeeeCCCCcceEEeeechhhhcccccccCC
Q 003076 663 AYA-KGDCKTCSYAGTFRPINCQRRCGHPTQRWYHVPRSWLKPTKNLLVVFEELGGDASRISLVKRSVARVCADAHEHHP 741 (850)
Q Consensus 663 ~~~-~g~~~~~~~~G~~~~~~~~~~cg~PQqtLYhVP~~~Lk~g~N~IvvfEe~g~~p~~i~~~~~~~~~vc~~~~e~~~ 741 (850)
.++ .+.|..|+|+|+|++.+|+||||+|||||||||++|||+|+|+||||||+|++|..|+|.+++++.||++++|.|
T Consensus 661 ~~a~~~gC~~c~y~g~~~~~kc~~~cggP~q~lYHVPr~~Lk~g~N~lViFEe~gg~p~~I~~~~~~~~~~c~~~~e~~- 739 (840)
T PLN03059 661 AYTAHGSCNGCNYAGTFDDKKCRTNCGEPSQRWYHVPRSWLKPSGNLLIVFEEWGGNPAGISLVKRTTDSVCADIFEGQ- 739 (840)
T ss_pred cccccCCCccccccccccchhhhccCCCceeEEEeCcHHHhccCCceEEEEEecCCCCCceEEEEeecCcccccccccC-
Confidence 743 334488999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCCCCCCCCCcEEEEcCCCCeEeEeeeeccCCCCCCCCCCCCCCccCCChhHHHHHHcCCCCceEEEecCC
Q 003076 742 TTDNNDIENKGNSNSTGNAKVLLQCAPGQSITSIEFASFGTPSGTCGSFQKGTCHAPNSHAMLEKECIGQESCSIFISSG 821 (850)
Q Consensus 742 ~~~~~~~~~~~~~~~ce~~~~~L~C~~g~~Is~I~~A~YGR~~~~C~~~~~~~C~~~~sl~~V~~~C~Gk~~C~i~a~~~ 821 (850)
|+|++|++.......-....++|+||.|++|++|.+|+|||+.++|+++.+++|++++++++|+++|+||++|+|.+++.
T Consensus 740 p~~~~w~~~~~~~~~~~~~~~~L~C~~G~~Is~I~fAsYGrp~gtC~~~~~g~C~a~~S~~vV~kaC~Gk~~CsV~asn~ 819 (840)
T PLN03059 740 PALKNWQIIASGKVNSLQPKAHLWCPPGQKISKIKFASFGVPQGTCGSFREGSCHAHKSYDAFERNCIGKQSCSVTVAPE 819 (840)
T ss_pred CccccccccccccccccCCcEEEECCCCceEEEEEEecCCCCCCCCCCCCCCCEeCCcHHHHHHHHCCCCCceEEEeccc
Confidence 46999999665543355778999999999997799999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCCceEEEEEEee
Q 003076 822 VFGTDPCPNVLKRLSVQAVCS 842 (850)
Q Consensus 822 ~Fg~DPCpgt~KYL~V~Y~C~ 842 (850)
+||+||||||+|||+|+|+|.
T Consensus 820 ~FggDPC~gt~KyL~V~~~Cs 840 (840)
T PLN03059 820 VFGGDPCPDSMKKLSVEAVCS 840 (840)
T ss_pred eecCCCCCCceeEEEEEEEeC
Confidence 997799999999999999994
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-153 Score=1298.75 Aligned_cols=631 Identities=61% Similarity=1.108 Sum_probs=580.8
Q ss_pred ccceeEEEecccEEECCeEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHH
Q 003076 24 IQCSTVTYDRKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFI 103 (850)
Q Consensus 24 ~~~~~v~~~~~~~~idG~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl 103 (850)
.+.+.|++|+++|.+||+|++++||+|||+|++|++|+|+|+|+|++|+|+|+||||||.|||+||+|||+|+.||++||
T Consensus 15 ~~~~~v~yd~~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFi 94 (649)
T KOG0496|consen 15 GSSFNVTYDKRSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFI 94 (649)
T ss_pred cceeEEeccccceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHH
Confidence 33899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCcEEEEecCceeccccCCCCCCcccccCCCeEeecCChhhHHHHHHHHHHHHHHHhccccccccCCceEEeccc
Q 003076 104 KTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIE 183 (850)
Q Consensus 104 ~la~~~gL~vilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiE 183 (850)
++|++.||+||||+||||||||++||+|.||..+|++.+||+|++|+++|++|+++|++.+| +|+++|||||||+|||
T Consensus 95 kl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGPIIl~QIE 172 (649)
T KOG0496|consen 95 KLIHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGPIILVQIE 172 (649)
T ss_pred HHHHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCCEEEEEee
Confidence 99999999999999999999999999999998999999999999999999999999999999 9999999999999999
Q ss_pred cccCCCccccCcchHHHHHHHHHHHhcCCCCcceeeeCCCCCCCccccCCCCccc-ccCC-CCCCCCCeEeeeecccccc
Q 003076 184 NEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPWVMCKEDDAPDPVINSCNGFYC-DAFS-PNKPYKPTLWTEAWSGWFT 261 (850)
Q Consensus 184 NEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~g~~~-~~~~-~~~p~~P~~~~E~~~Gwf~ 261 (850)
||||.+...+++.++.|++|-+.|+...+.+|||+||.+.++|++++++|||++| +.|. +++|++|+||||||+|||+
T Consensus 173 NEYG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~ 252 (649)
T KOG0496|consen 173 NEYGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFT 252 (649)
T ss_pred chhhHHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecccccchhh
Confidence 9999887777888999999999999999999999999999999999999999999 8888 8999999999999999999
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhCCceeeeeeeecCCCCCCCCCCCcccccCcCCCCCCCCCCCCchhHHHHHHHHHHH
Q 003076 262 EFGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAI 341 (850)
Q Consensus 262 ~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~TSYDydApl~E~G~~~t~ky~~lr~l~~~~ 341 (850)
+||++++.|++++++..+++++++|+|++||||||||||||++|| ++.+|||||||||+ |..++|||.++|.+|..+
T Consensus 253 ~wGg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G-~~~atsy~~dap~d--gl~~~pk~ghlk~~hts~ 329 (649)
T KOG0496|consen 253 HWGGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNG-PFIATSYDYDAPLD--GLLRQPKYGHLKPLHTSY 329 (649)
T ss_pred hhCCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccC-cccccccccccccc--hhhcCCCccccccchhhh
Confidence 999999999999999999999999999999999999999999998 99999999999999 999999999999999999
Q ss_pred HhhhccccCCCCccccCCCccceeeeecCccceeeeeeccCCccceEEEeCCeeeecCCcceeecCCCCceeeccceeee
Q 003076 342 KLCEYALVSSDPTVTSLGTYQQAHVFSAGQQKCAAFLSNYNTKSAARVTFNGRQYNLPPWSISILPDCKNVVFNTAKVAV 421 (850)
Q Consensus 342 ~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~fl~n~~~~~~~~v~~~~~~~~~p~~sv~i~~~~~~~~~~t~~v~~ 421 (850)
..+++.+..+++....++ ...+.|..|+.|++......+.|++..+.+|+|+++|+++|++++|+|+++..
T Consensus 330 d~~ep~lv~gd~~~~kyg---------~~~~~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~ 400 (649)
T KOG0496|consen 330 DYCEPALVAGDITTAKYG---------NLREACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMA 400 (649)
T ss_pred hhcCccccccCccccccc---------chhhHHHHHHhcCCCCCCCccccCCCccccCceeEEechhhcchhhhcccccc
Confidence 999988877775543433 33356999999999988899999999999999999999999999999988643
Q ss_pred eccccccccccccccccccccccccccCCCCcccccchhhhhcCCCCCccEEEEEEEeccCCCcccccCCCCceeeeC-C
Q 003076 422 QHTKMQMLPTGSKLLSWETYDEDISSLGESSTLTAIGLLEQINITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVE-S 500 (850)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~mEql~~t~d~~GYl~Y~T~i~~~~~~~~~~~g~~~~L~v~-~ 500 (850)
+ |....||++ +|..++ .+||++|+|.++.+.+++ +.|+|. +
T Consensus 401 ~---------------~~~~~e~~~-------------~~~~~~---~~~~ll~~~~~t~d~sd~-------t~~~i~ls 442 (649)
T KOG0496|consen 401 Q---------------WISFTEPIP-------------SEAVGQ---SFGGLLEQTNLTKDKSDT-------TSLKIPLS 442 (649)
T ss_pred c---------------cccccCCCc-------------cccccC---cceEEEEEEeeccccCCC-------ceEeeccc
Confidence 1 444445443 566666 788999999998766552 468888 9
Q ss_pred cccEEEEEECCEEEEEEEcccccceeEEeecccccCCCCeEEEEEecCCcccccCCCCccccceeccEEEccccCCCccC
Q 003076 501 AGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDL 580 (850)
Q Consensus 501 ~~D~a~VfVng~~vG~~~~~~~~~~~~~~~~i~l~~g~~~L~ILven~GrvNyG~~~~~~~KGI~g~V~l~g~~~~~~~L 580 (850)
++|++||||||+++|++++......+.+..++.+++|.|+|+|||||+||+||| +++++.|||+|+|+|+|+ +++
T Consensus 443 ~g~~~hVfvNg~~~G~~~g~~~~~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G-~~e~~~~Gi~g~v~l~g~----~~l 517 (649)
T KOG0496|consen 443 LGHALHVFVNGEFAGSLHGNNEKIKLNLSQPVGLKAGENKLALLSENVGLPNYG-HFENDFKGILGPVYLNGL----IDL 517 (649)
T ss_pred ccceEEEEECCEEeeeEeccccceeEEeecccccccCcceEEEEEEecCCCCcC-cccccccccccceEEeee----ecc
Confidence 999999999999999999987677788888999999999999999999999999 889999999999999997 467
Q ss_pred ccCCceEecCCccccccccCCCCCCCCcccCCCccccccCCceEEEEEEeCCCCCCceEEeeCCCCceeEEECCeeeeec
Q 003076 581 TWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPTGNEPLALDLRSMGKGQVWINGQSIGRY 660 (850)
Q Consensus 581 ~~~~W~~~~~l~~e~~~~~~~~~~~~~~w~~~~~~~~~~~~p~wYk~~F~~p~~~d~~~Ldl~g~gKG~vwVNG~nLGRY 660 (850)
+++.|.|+++|.+|.+.++..++..+++|......+. .+|.+||+ +|++|++.+||||||.|||||+|||||+|||||
T Consensus 518 ~~~~w~~~~gl~ge~~~~~~~~~~~~v~w~~~~~~~~-k~P~~w~k-~f~~p~g~~~t~Ldm~g~GKG~vwVNG~niGRY 595 (649)
T KOG0496|consen 518 TWTKWPYKVGLKGEKLGLHTEEGSSKVKWKKLSNTAT-KQPLTWYK-TFDIPSGSEPTALDMNGWGKGQVWVNGQNIGRY 595 (649)
T ss_pred ceeecceecccccchhhccccccccccceeeccCccc-CCCeEEEE-EecCCCCCCCeEEecCCCcceEEEECCcccccc
Confidence 7678889999999999999988888899987754444 36889999 999999999999999999999999999999999
Q ss_pred ccccccCCCCccccCCCcCCccccCCCCCcceeeeecCcccccCCccEEEEEeeeCCCCcceEEeeechhhhcccccc
Q 003076 661 WMAYAKGDCKTCSYAGTFRPINCQRRCGHPTQRWYHVPRSWLKPTKNLLVVFEELGGDASRISLVKRSVARVCADAHE 738 (850)
Q Consensus 661 W~~~~~g~~~~~~~~G~~~~~~~~~~cg~PQqtLYhVP~~~Lk~g~N~IvvfEe~g~~p~~i~~~~~~~~~vc~~~~e 738 (850)
||++ | ||++|| ||++|||++.|+||||||++++|..|+|.++++..+|..+.+
T Consensus 596 W~~~-----------G-------------~Q~~yh-vPr~~Lk~~~N~lvvfEee~~~p~~i~~~~~~~~~~~~~v~~ 648 (649)
T KOG0496|consen 596 WPSF-----------G-------------PQRTYH-VPRSWLKPSGNLLVVFEEEGGDPNGISFVTRPVLSTCAYVRE 648 (649)
T ss_pred cCCC-----------C-------------CceEEE-CcHHHhCcCCceEEEEEeccCCCccceEEEeEeeeEeeeccc
Confidence 9876 5 866666 999999999999999999999999999999988888887754
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=3.6e-89 Score=748.97 Aligned_cols=297 Identities=42% Similarity=0.811 Sum_probs=231.0
Q ss_pred cEEECCeEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEE
Q 003076 35 AILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH 114 (850)
Q Consensus 35 ~~~idG~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vi 114 (850)
+|+|||||++|+||||||+|+|+++|+|+|+||||+|+|||++|||||+|||+||+|||+|.+||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCceeccccCCCCCCcccccCCCeEeecCChhhHHHHHHHHHHHHHHHhccccccccCCceEEeccccccCCCccccC
Q 003076 115 LRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLG 194 (850)
Q Consensus 115 lrpGPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~ 194 (850)
|||||||||||++||+|.||++++++++|++||.|+++|++|+++|+++++ ++++++||||||+|||||||..
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GGpII~vQvENEyg~~----- 153 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIK--PLQYTNGGPIIMVQVENEYGSY----- 153 (319)
T ss_dssp EEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEEESSSGGCT-----
T ss_pred ecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHH--hhhhcCCCceehhhhhhhhCCC-----
Confidence 999999999999999999999999999999999999999999999999999 8899999999999999999953
Q ss_pred cchHHHHHHHHHHHhcCCCC-cceeeeCCC--------CCCCccccCCCCccccc--------CCCCCCCCCeEeeeecc
Q 003076 195 AAGHAYVNWAAKMAVGLDTG-VPWVMCKED--------DAPDPVINSCNGFYCDA--------FSPNKPYKPTLWTEAWS 257 (850)
Q Consensus 195 ~~~~~y~~~l~~~~~~~g~~-vp~~~~~~~--------~~~~~~~~~~~g~~~~~--------~~~~~p~~P~~~~E~~~ 257 (850)
.++++||+.|++++++.+++ +++++++.. ..++..+.+++++.|.. ....+|++|+|++|||+
T Consensus 154 ~~~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~ 233 (319)
T PF01301_consen 154 GTDRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWG 233 (319)
T ss_dssp SS-HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEES
T ss_pred cccHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEecc
Confidence 38999999999999999998 677777652 12332233344444422 12456889999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhCCceeeeeeeecCCCCCCCCCCCcc----cccCcCCCCCCCCCCCCchhHHH
Q 003076 258 GWFTEFGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFI----TTSYDYDAPLDEYGLMRQPKYGH 333 (850)
Q Consensus 258 Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~----~TSYDydApl~E~G~~~t~ky~~ 333 (850)
|||++||++++.+++++++..+++++++|.+ +||||||||||||+++|++.. +|||||+|||+|+|++ +|||++
T Consensus 234 Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g~~-~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~-~~Ky~~ 311 (319)
T PF01301_consen 234 GWFDHWGGPHYTRPAEDVAADLARMLSKGNS-LNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQL-TPKYYE 311 (319)
T ss_dssp S---BTTS--HHHHHHHHHHHHHHHHHHCSE-EEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHH
T ss_pred ccccccCCCCccCCHHHHHHHHHHHHHhhcc-cceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCc-CHHHHH
Confidence 9999999999999999999999999999966 799999999999999877654 5999999999999999 599999
Q ss_pred HHHHHHH
Q 003076 334 LKQLHEA 340 (850)
Q Consensus 334 lr~l~~~ 340 (850)
||+||.+
T Consensus 312 lr~l~~~ 318 (319)
T PF01301_consen 312 LRRLHQK 318 (319)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999874
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5e-38 Score=366.98 Aligned_cols=289 Identities=24% Similarity=0.315 Sum_probs=214.9
Q ss_pred EEEecccEEECCeEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEE-cccCCccCCCCceeeeeccchHHHHHHHHH
Q 003076 29 VTYDRKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDT-YVFWNGHEPSPGHYNFEGSYDLVRFIKTVQ 107 (850)
Q Consensus 29 v~~~~~~~~idG~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~NtV~~-yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~ 107 (850)
|++++..+++||+|++++||.+||+|+|++.|.|||+|||++|+|+|++ |+.||+|||++|+|||+ .+|+. ||++|+
T Consensus 1 ~~~~~~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~ 78 (673)
T COG1874 1 VSYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAY 78 (673)
T ss_pred CcccccceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHH
Confidence 3567889999999999999999999999999999999999999999999 99999999999999999 78888 999999
Q ss_pred HcCcEEEEecCc-eeccccCCCCCCcccccCCCeEee---------cCChhhHHHHHHHHHHHHHHHhccccccccCCce
Q 003076 108 RVGLYAHLRIGP-YVCAEWNFGGFPVWLKYVPGISFR---------TDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPI 177 (850)
Q Consensus 108 ~~gL~vilrpGP-yicaEw~~GG~P~WL~~~p~~~~R---------~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpI 177 (850)
+.||+||||||| ..|.+|..+++|+||..++.-..| .++|.|++++++.+.+|.+++ +++|++|
T Consensus 79 ~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~------~~~~~~v 152 (673)
T COG1874 79 KAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERL------YGNGPAV 152 (673)
T ss_pred hcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHH------hccCCce
Confidence 999999999999 999999999999999876553232 346778888877444444443 4789999
Q ss_pred EEeccccccCCCccccCcchHHHHHHHHHHHhcC-CCCcceeeeCCC-CCCC-ccccCCC-----Cccc--ccCCCCCCC
Q 003076 178 ILSQIENEYGPESKSLGAAGHAYVNWAAKMAVGL-DTGVPWVMCKED-DAPD-PVINSCN-----GFYC--DAFSPNKPY 247 (850)
Q Consensus 178 I~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~-g~~vp~~~~~~~-~~~~-~~~~~~~-----g~~~--~~~~~~~p~ 247 (850)
|+||++||||++.+.++.|.+.+..||++.+-.. .++-+|=+.-.+ +..+ ..|.+.+ +... -+|......
T Consensus 153 ~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~~~~~~~ld~~~f~~e 232 (673)
T COG1874 153 ITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGELPLPGLYLDYRRFESE 232 (673)
T ss_pred eEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccccCCccchhhHhhhhhh
Confidence 9999999999965556678999999999877211 112222111100 0000 0111111 1100 022222222
Q ss_pred C----CeEeeeeccccc-cccCCCCCCCC-HHHHHHHHHHHHHhCCceeeeeeeecCCCCC------CCCCCC---c---
Q 003076 248 K----PTLWTEAWSGWF-TEFGGAVHRRP-VQDLAFAVARFIQKGGSFFNYYMYHGGTNFG------RTAGGP---F--- 309 (850)
Q Consensus 248 ~----P~~~~E~~~Gwf-~~wG~~~~~~~-~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG------~~~G~~---~--- 309 (850)
+ +....|.+-+|| +.|..+.-... .+.-++.+++.|..+.+ -||||||+|++|+ +.+|+. +
T Consensus 233 ~~~~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~m 311 (673)
T COG1874 233 QILEFVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWLM 311 (673)
T ss_pred hhHHHHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceeec
Confidence 2 445567788888 77776554444 34446667777777777 6999999999999 776653 2
Q ss_pred ----ccccCcCCCCCCCCCCC
Q 003076 310 ----ITTSYDYDAPLDEYGLM 326 (850)
Q Consensus 310 ----~~TSYDydApl~E~G~~ 326 (850)
..++|++++.+.+.|..
T Consensus 312 e~~P~~vn~~~~n~~~~~G~~ 332 (673)
T COG1874 312 EQLPSVVNWALYNKLKRPGAL 332 (673)
T ss_pred cCCcchhhhhhccCCCCCccc
Confidence 47999999999999984
No 5
>KOG4729 consensus Galactoside-binding lectin [General function prediction only]
Probab=99.83 E-value=4.4e-21 Score=198.48 Aligned_cols=91 Identities=31% Similarity=0.629 Sum_probs=84.6
Q ss_pred CCCCCcEEEEcCCCCeEeEeeeeccCCCC-CCCCCC----CCCCccCCChhHHHHHHcCCCCceEEEecCCCccCCCCCC
Q 003076 756 STGNAKVLLQCAPGQSITSIEFASFGTPS-GTCGSF----QKGTCHAPNSHAMLEKECIGQESCSIFISSGVFGTDPCPN 830 (850)
Q Consensus 756 ~ce~~~~~L~C~~g~~Is~I~~A~YGR~~-~~C~~~----~~~~C~~~~sl~~V~~~C~Gk~~C~i~a~~~~Fg~DPCpg 830 (850)
+|||+.++|+||.|.|| +|++|+|||.. .+|.+. .+.+|..+.+++++.++|+++++|.|.|+..+|+.|||||
T Consensus 40 aCdG~~i~L~CP~~dvI-sv~sanYGR~~~~iC~pd~~~~~Si~C~~p~s~~i~~~rCnnr~~C~vvv~s~~F~~DPCPg 118 (265)
T KOG4729|consen 40 ACDGERITLSCPRGDVI-SVQSANYGRFSDKICDPDPGREESINCYLPKSFSILSSRCNNRRQCTVVVDSDVFGDDPCPG 118 (265)
T ss_pred eecCceEEEEcCCCCEE-EEEecccCcccccccCCccccccchhccChHHHHHHHHhcCCCceEEEEecCCccCCCCCCC
Confidence 59999999999999999 59999999994 799642 4689999999999999999999999999999999999999
Q ss_pred CCceEEEEEEeeCCCCC
Q 003076 831 VLKRLSVQAVCSTADAN 847 (850)
Q Consensus 831 t~KYL~V~Y~C~p~~~~ 847 (850)
|+|||+|+|.|+|...+
T Consensus 119 T~KYLev~Y~Cvp~~~~ 135 (265)
T KOG4729|consen 119 TSKYLEVQYGCVPYAFT 135 (265)
T ss_pred chhheEEEeccCccccc
Confidence 99999999999998554
No 6
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.82 E-value=6.3e-20 Score=206.52 Aligned_cols=262 Identities=20% Similarity=0.259 Sum_probs=161.2
Q ss_pred ecCCCCCHhHHHHHHHHHHHCCCCEEEE-cccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEEEecCceeccccCCC
Q 003076 50 IHYPRSTPEMWEDLIRKAKDGGLDVIDT-YVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFG 128 (850)
Q Consensus 50 ~Hy~r~~~~~W~~~l~k~ka~G~NtV~~-yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vilrpGPyicaEw~~G 128 (850)
+++..++++.|+++|++||++|+|+|++ .+.|+.+||+||+|||+ .|+++|++|+++||+|||+.. .+
T Consensus 2 y~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~~ 70 (374)
T PF02449_consen 2 YYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------TA 70 (374)
T ss_dssp --GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------TT
T ss_pred CCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------cc
Confidence 4567789999999999999999999996 67799999999999999 799999999999999999964 67
Q ss_pred CCCccccc-CCCeEee----------------cCChhhHHHHHHHHHHHHHHHhccccccccCCceEEeccccccCCCcc
Q 003076 129 GFPVWLKY-VPGISFR----------------TDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESK 191 (850)
Q Consensus 129 G~P~WL~~-~p~~~~R----------------~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~ 191 (850)
..|.||.+ +|++... .++|.|++++++++++|+++++++| .||+|||+||++...+
T Consensus 71 ~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p-------~vi~~~i~NE~~~~~~ 143 (374)
T PF02449_consen 71 APPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHP-------AVIGWQIDNEPGYHRC 143 (374)
T ss_dssp TS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTT-------TEEEEEECCSTTCTS-
T ss_pred ccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccc-------eEEEEEeccccCcCcC
Confidence 79999975 5775321 3468999999999999999988544 7999999999987422
Q ss_pred ccCcchHHHHHHHHHHHhcC-------C-------------CCcceeeeCCC------C---------------------
Q 003076 192 SLGAAGHAYVNWAAKMAVGL-------D-------------TGVPWVMCKED------D--------------------- 224 (850)
Q Consensus 192 ~~~~~~~~y~~~l~~~~~~~-------g-------------~~vp~~~~~~~------~--------------------- 224 (850)
....+.++|.+||++++... | +..|..+.... +
T Consensus 144 ~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir 223 (374)
T PF02449_consen 144 YSPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIR 223 (374)
T ss_dssp -SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22347888999999998631 1 11232222100 0
Q ss_pred --CCCccccCCC--C-----cc-------cc--------c---------CC----------CCCCCCCeEeeeecccccc
Q 003076 225 --APDPVINSCN--G-----FY-------CD--------A---------FS----------PNKPYKPTLWTEAWSGWFT 261 (850)
Q Consensus 225 --~~~~~~~~~~--g-----~~-------~~--------~---------~~----------~~~p~~P~~~~E~~~Gwf~ 261 (850)
.|+- .-+.| + .+ +| . +. ...+++|.+++|..+| -.
T Consensus 224 ~~~p~~-~vt~n~~~~~~~~~d~~~~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g-~~ 301 (374)
T PF02449_consen 224 EYDPDH-PVTTNFMGSWFNGIDYFKWAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPG-PV 301 (374)
T ss_dssp HHSTT--EEE-EE-TT---SS-HHHHGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S---
T ss_pred HhCCCc-eEEeCccccccCcCCHHHHHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCC-CC
Confidence 0110 00101 0 00 00 0 00 1146899999999999 66
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhCCceeeeeeeecCCCCCCCCCCCcccccCcCCCCCCCCC-CCCchhHHHHHHHHHH
Q 003076 262 EFGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYG-LMRQPKYGHLKQLHEA 340 (850)
Q Consensus 262 ~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~TSYDydApl~E~G-~~~t~ky~~lr~l~~~ 340 (850)
.|+.......+..+....-.-++.|+..+.|+=+ ..-.+|.-.. ..+.|+-+| .+ +++|.+++++...
T Consensus 302 ~~~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E~~---------~~g~~~~dg~~~-~~~~~e~~~~~~~ 370 (374)
T PF02449_consen 302 NWRPYNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAEQF---------HGGLVDHDGREP-TRRYREVAQLGRE 370 (374)
T ss_dssp SSSSS-----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTTTT---------S--SB-TTS--B--HHHHHHHHHHHH
T ss_pred CCccCCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCchhh---------hcccCCccCCCC-CcHHHHHHHHHHH
Confidence 6766555555566666565668999998887755 3333442211 136788999 65 7999999999876
Q ss_pred HH
Q 003076 341 IK 342 (850)
Q Consensus 341 ~~ 342 (850)
|+
T Consensus 371 l~ 372 (374)
T PF02449_consen 371 LK 372 (374)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 7
>PF02140 Gal_Lectin: Galactose binding lectin domain; InterPro: IPR000922 The D-galactoside binding lectin purified from sea urchin (Anthocidaris crassispina) eggs exists as a disulphide-linked homodimer of two subunits; the dimeric form is essential for hemagglutination activity []. The sea urchin egg lectin (SUEL) forms a new class of lectins. Although SUEL was first isolated as a D-galactoside binding lectin, it was latter shown that it bind to L-rhamnose preferentially [, ]. L-rhamnose and D-galactose share the same hydroxyl group orientation at C2 and C4 of the pyranose ring structure. A cysteine-rich domain homologous to the SUEL protein has been identified in the following proteins [, , ]: Plant beta-galactosidases (3.2.1.23 from EC) (lactases). Mammalian latrophilin, the calcium independent receptor of alpha-latrotoxin (CIRL). The galactose-binding lectin domain is not required for alpha-latratoxin binding []. Human lectomedin-1. Rhamnose-binding lectin (SAL) from catfish (Silurus asotus, Namazu) eggs. This protein is composed of three tandem repeat domains homologous to the SUEL lectin domain. All cysteine positions of each domain are completely conserved []. The hypothetical B0457.1, F32A7.3A and F32A7.3B proteins from Caenorhabditis elegans. The human KIAA0821 protein. ; GO: 0005529 sugar binding; PDB: 2JXA_A 2JX9_A 2ZX2_A 2ZX3_B 2ZX0_B 2ZX1_B 2ZX4_B.
Probab=99.79 E-value=5.1e-20 Score=162.89 Aligned_cols=76 Identities=41% Similarity=0.852 Sum_probs=62.2
Q ss_pred EEcCCCCeEeEeeeeccCCCC-CCCCCC---CCCCccCCChhHHHHHHcCCCCceEEEecCCCccCCCCCCCCceEEEEE
Q 003076 764 LQCAPGQSITSIEFASFGTPS-GTCGSF---QKGTCHAPNSHAMLEKECIGQESCSIFISSGVFGTDPCPNVLKRLSVQA 839 (850)
Q Consensus 764 L~C~~g~~Is~I~~A~YGR~~-~~C~~~---~~~~C~~~~sl~~V~~~C~Gk~~C~i~a~~~~Fg~DPCpgt~KYL~V~Y 839 (850)
|+||.|++| .|.+|+|||+. .+|+.. .+.+|.+++++++|+++|+||++|+|.+++.+|| ||||+++|||+|+|
T Consensus 1 L~C~~g~~I-~I~~A~YGR~~~~~C~~~~~~~~~~C~~~~~~~~v~~~C~g~~~C~v~~~~~~f~-dpC~~~~KyL~V~Y 78 (80)
T PF02140_consen 1 LSCPPGKVI-SIDSAFYGRTSSSICPSSSSGSNTNCSAPDALSIVKERCNGKQSCSVPADNSVFG-DPCPGTSKYLEVTY 78 (80)
T ss_dssp EE-STTEEE-EEEEEEEEBSSSSTT--GGGCS-TTB--TTHHHHHHHHHTTBSEEEEESSHHHH---SSTTS--EEEEEE
T ss_pred CCCcCCCEE-EEEEeecCCCCCCCCcCCCcCCCCccccccccchhHHhCCCCCccEEEeccCccC-CCCCCCCeEEEEEE
Confidence 899999999 69999999995 699743 4678999999999999999999999999999997 99999999999999
Q ss_pred Ee
Q 003076 840 VC 841 (850)
Q Consensus 840 ~C 841 (850)
+|
T Consensus 79 ~C 80 (80)
T PF02140_consen 79 TC 80 (80)
T ss_dssp EE
T ss_pred EC
Confidence 99
No 8
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.19 E-value=9.2e-10 Score=120.47 Aligned_cols=153 Identities=20% Similarity=0.243 Sum_probs=109.6
Q ss_pred EEEecccEEECCeEeEEEEEEecCCC------CCHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHH
Q 003076 29 VTYDRKAILINGQRRILISGSIHYPR------STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRF 102 (850)
Q Consensus 29 v~~~~~~~~idG~p~~~~sG~~Hy~r------~~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~f 102 (850)
|.+.++.|+|||||++|-+...|... .+++.|+.+|++||++|+|+|++ .|-|. =.+|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~-----~h~p~-----------~~~~ 64 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT-----HHYPP-----------SPRF 64 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE-----TTS-------------SHHH
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc-----ccccC-----------cHHH
Confidence 57889999999999999999999633 48899999999999999999999 55553 1789
Q ss_pred HHHHHHcCcEEEEecCceeccccCCCCCCcccccCCCeEeecCChhhHHHHHHHHHHHHHHHhccccccccCCceEEecc
Q 003076 103 IKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQI 182 (850)
Q Consensus 103 l~la~~~gL~vilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 182 (850)
+++|.++||.|+.-+.=.-++.|..-|. ......||.+.+.+.+-+++++.+.++|| .||+|=+
T Consensus 65 ~~~cD~~GilV~~e~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~NHP-------SIi~W~~ 128 (298)
T PF02836_consen 65 YDLCDELGILVWQEIPLEGHGSWQDFGN---------CNYDADDPEFRENAEQELREMVRRDRNHP-------SIIMWSL 128 (298)
T ss_dssp HHHHHHHT-EEEEE-S-BSCTSSSSTSC---------TSCTTTSGGHHHHHHHHHHHHHHHHTT-T-------TEEEEEE
T ss_pred HHHHhhcCCEEEEeccccccCccccCCc---------cccCCCCHHHHHHHHHHHHHHHHcCcCcC-------chheeec
Confidence 9999999999997752101122221110 12356789999999999999999888666 8999999
Q ss_pred ccccCCCccccCcchHHHHHHHHHHHhcCCCCcceeeeCC
Q 003076 183 ENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPWVMCKE 222 (850)
Q Consensus 183 ENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~ 222 (850)
-||- ....+++.|.+++++..-+-|.....+
T Consensus 129 gNE~---------~~~~~~~~l~~~~k~~DptRpv~~~~~ 159 (298)
T PF02836_consen 129 GNES---------DYREFLKELYDLVKKLDPTRPVTYASN 159 (298)
T ss_dssp EESS---------HHHHHHHHHHHHHHHH-TTSEEEEETG
T ss_pred CccC---------ccccchhHHHHHHHhcCCCCceeeccc
Confidence 9997 245778889999988777767654443
No 9
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.02 E-value=4.5e-08 Score=117.41 Aligned_cols=162 Identities=17% Similarity=0.108 Sum_probs=116.1
Q ss_pred ccceeEEEecccEEECCeEeEEEEEEecCCC------CCHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccc
Q 003076 24 IQCSTVTYDRKAILINGQRRILISGSIHYPR------STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSY 97 (850)
Q Consensus 24 ~~~~~v~~~~~~~~idG~p~~~~sG~~Hy~r------~~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~ 97 (850)
..=.+|++++..|+|||+|+++-+...|... ++++.|+.+|+.||++|+|+|++ .|-|.
T Consensus 273 ~GfR~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~-----sh~p~---------- 337 (604)
T PRK10150 273 FGIRSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRT-----SHYPY---------- 337 (604)
T ss_pred eEEEEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEe-----ccCCC----------
Confidence 3445688999999999999999999888532 57888999999999999999999 35553
Q ss_pred hHHHHHHHHHHcCcEEEEecCceeccccCCCCCCcccc-------c-CCCeEeecCChhhHHHHHHHHHHHHHHHhcccc
Q 003076 98 DLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK-------Y-VPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKL 169 (850)
Q Consensus 98 dl~~fl~la~~~gL~vilrpGPyicaEw~~GG~P~WL~-------~-~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~ 169 (850)
=.+|+++|.|+||+|+-... .-|+..|.. + .+.......+|.+.++..+-+++++.+.++||
T Consensus 338 -~~~~~~~cD~~GllV~~E~p--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHP- 407 (604)
T PRK10150 338 -SEEMLDLADRHGIVVIDETP--------AVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRELIARDKNHP- 407 (604)
T ss_pred -CHHHHHHHHhcCcEEEEecc--------cccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhccCCc-
Confidence 16899999999999997742 111222221 1 11111123457777777777777777777555
Q ss_pred ccccCCceEEeccccccCCCccccCcchHHHHHHHHHHHhcCCCCcceeee
Q 003076 170 FASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPWVMC 220 (850)
Q Consensus 170 ~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~ 220 (850)
.||||-|-||.... ......|++.|.+.+++...+-|...+
T Consensus 408 ------SIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt~~ 448 (604)
T PRK10150 408 ------SVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVTCV 448 (604)
T ss_pred ------eEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceEEE
Confidence 89999999997532 113457888888999888777665554
No 10
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.79 E-value=5.9e-08 Score=103.84 Aligned_cols=161 Identities=19% Similarity=0.243 Sum_probs=108.8
Q ss_pred CCeEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCccC-CCCce-eeeeccchHHHHHHHHHHcCcEEEEe
Q 003076 39 NGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHE-PSPGH-YNFEGSYDLVRFIKTVQRVGLYAHLR 116 (850)
Q Consensus 39 dG~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hE-p~~G~-fdF~g~~dl~~fl~la~~~gL~vilr 116 (850)
+|+++.+.+-+.|.... ..-++.+++||++|+|+|++.|.|...+ +.++. ++=+....|+++|+.|+++||+|||.
T Consensus 4 ~G~~v~~~G~n~~w~~~--~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild 81 (281)
T PF00150_consen 4 NGKPVNWRGFNTHWYNP--SITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILD 81 (281)
T ss_dssp TSEBEEEEEEEETTSGG--GSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCeEEeeeeecccCCC--CCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 69999999999994322 1677899999999999999999995544 67664 66666679999999999999999987
Q ss_pred cCceeccccCCCCCCcccccCCCeEeecCChhhHHHHHHHHHHHHHHHhccccccccCCceEEeccccccCCCccc--cC
Q 003076 117 IGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKS--LG 194 (850)
Q Consensus 117 pGPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~--~~ 194 (850)
+= + .|.|....... ...+...+...++.+.|+.++++ ..+|++++|=||....... ..
T Consensus 82 ~h----~------~~~w~~~~~~~---~~~~~~~~~~~~~~~~la~~y~~-------~~~v~~~el~NEP~~~~~~~~w~ 141 (281)
T PF00150_consen 82 LH----N------APGWANGGDGY---GNNDTAQAWFKSFWRALAKRYKD-------NPPVVGWELWNEPNGGNDDANWN 141 (281)
T ss_dssp EE----E------STTCSSSTSTT---TTHHHHHHHHHHHHHHHHHHHTT-------TTTTEEEESSSSGCSTTSTTTTS
T ss_pred ec----c------Ccccccccccc---ccchhhHHHHHhhhhhhccccCC-------CCcEEEEEecCCccccCCccccc
Confidence 42 1 17774322111 11222334444556666666652 3479999999999764211 00
Q ss_pred ----cchHHHHHHHHHHHhcCCCCcceeeeC
Q 003076 195 ----AAGHAYVNWAAKMAVGLDTGVPWVMCK 221 (850)
Q Consensus 195 ----~~~~~y~~~l~~~~~~~g~~vp~~~~~ 221 (850)
..-.++.+.+.+.+|+.+.+.+++.-.
T Consensus 142 ~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~ 172 (281)
T PF00150_consen 142 AQNPADWQDWYQRAIDAIRAADPNHLIIVGG 172 (281)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred cccchhhhhHHHHHHHHHHhcCCcceeecCC
Confidence 112456666777778888877665533
No 11
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.77 E-value=1.2e-08 Score=96.09 Aligned_cols=68 Identities=32% Similarity=0.693 Sum_probs=49.0
Q ss_pred CCceEEEEEEeCCCCCCceE-Eee--CCCCceeEEECCeeeeecccccccCCCCccccCCCcCCccccCCCCCcceeeee
Q 003076 620 QSLKWYKAYFDAPTGNEPLA-LDL--RSMGKGQVWINGQSIGRYWMAYAKGDCKTCSYAGTFRPINCQRRCGHPTQRWYH 696 (850)
Q Consensus 620 ~~p~wYk~~F~~p~~~d~~~-Ldl--~g~gKG~vwVNG~nLGRYW~~~~~g~~~~~~~~G~~~~~~~~~~cg~PQqtLYh 696 (850)
....|||++|........+. |+. ....+.+|||||++|||||+. +| ||++++
T Consensus 34 ~g~~~Yrg~F~~~~~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~-----------~g-------------~q~tf~- 88 (111)
T PF13364_consen 34 AGYLWYRGTFTGTGQDTSLTPLNIQGGNAFRASVWVNGWFLGSYWPG-----------IG-------------PQTTFS- 88 (111)
T ss_dssp SCEEEEEEEEETTTEEEEEE-EEECSSTTEEEEEEETTEEEEEEETT-----------TE-------------CCEEEE-
T ss_pred CCCEEEEEEEeCCCcceeEEEEeccCCCceEEEEEECCEEeeeecCC-----------CC-------------ccEEEE-
Confidence 46799999996422111233 333 457789999999999999964 35 999999
Q ss_pred cCcccccCCccEEEEE
Q 003076 697 VPRSWLKPTKNLLVVF 712 (850)
Q Consensus 697 VP~~~Lk~g~N~Ivvf 712 (850)
||..+|+.++|.|+|+
T Consensus 89 ~p~~il~~~n~v~~vl 104 (111)
T PF13364_consen 89 VPAGILKYGNNVLVVL 104 (111)
T ss_dssp E-BTTBTTCEEEEEEE
T ss_pred eCceeecCCCEEEEEE
Confidence 9999999875555554
No 12
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=98.74 E-value=2.4e-07 Score=116.82 Aligned_cols=263 Identities=17% Similarity=0.153 Sum_probs=152.8
Q ss_pred cccceeEEEecccEEECCeEeEEEEEEecCCC------CCHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeecc
Q 003076 23 LIQCSTVTYDRKAILINGQRRILISGSIHYPR------STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS 96 (850)
Q Consensus 23 ~~~~~~v~~~~~~~~idG~p~~~~sG~~Hy~r------~~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~ 96 (850)
++.=.+|.+++..|+|||+|+++-+...|... ++++.|+++|+.||++|+|+|++ .|-|.
T Consensus 314 ~~GfR~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~-----sHyP~--------- 379 (1021)
T PRK10340 314 RVGFRDIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRT-----AHYPN--------- 379 (1021)
T ss_pred eeEEEEEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCC---------
Confidence 33445578889999999999999999888422 47899999999999999999998 35443
Q ss_pred chHHHHHHHHHHcCcEEEEecCceeccccCCCCCCcccccCCCeEeecCChhhHHHHHHHHHHHHHHHhccccccccCCc
Q 003076 97 YDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGP 176 (850)
Q Consensus 97 ~dl~~fl~la~~~gL~vilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGp 176 (850)
=.+|+++|.|+||+|+-.. |..|..|.. . .+...-+++|.+.++..+=+++++.+.++| ..
T Consensus 380 --~~~fydlcDe~GllV~dE~-~~e~~g~~~-------~--~~~~~~~~~p~~~~~~~~~~~~mV~RdrNH-------PS 440 (1021)
T PRK10340 380 --DPRFYELCDIYGLFVMAET-DVESHGFAN-------V--GDISRITDDPQWEKVYVDRIVRHIHAQKNH-------PS 440 (1021)
T ss_pred --CHHHHHHHHHCCCEEEECC-cccccCccc-------c--cccccccCCHHHHHHHHHHHHHHHHhCCCC-------CE
Confidence 1689999999999999875 322222211 0 011112467777666555566666666655 48
Q ss_pred eEEeccccccCCCccccCcchHHHHHHHHHHHhcCCCCcceeeeCCCCC--CCccccCCCCcc--cccCCCCCCCCCeEe
Q 003076 177 IILSQIENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPWVMCKEDDA--PDPVINSCNGFY--CDAFSPNKPYKPTLW 252 (850)
Q Consensus 177 II~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~--~~~~~~~~~g~~--~~~~~~~~p~~P~~~ 252 (850)
||||=+-||-+. + . .++.+.+.+++..-.-|+ +..+... ..+++...-+.. ...+....+++|++.
T Consensus 441 Ii~WslGNE~~~-----g---~-~~~~~~~~~k~~DptR~v-~~~~~~~~~~~Dv~~~~Y~~~~~~~~~~~~~~~kP~i~ 510 (1021)
T PRK10340 441 IIIWSLGNESGY-----G---C-NIRAMYHAAKALDDTRLV-HYEEDRDAEVVDVISTMYTRVELMNEFGEYPHPKPRIL 510 (1021)
T ss_pred EEEEECccCccc-----c---H-HHHHHHHHHHHhCCCceE-EeCCCcCccccceeccccCCHHHHHHHHhCCCCCcEEE
Confidence 999999999753 2 1 235677777776665554 3332111 112222111110 112223345799999
Q ss_pred eeeccccccccCCCCCCCCHHHHHHHHHHH-----------HHh-----CCceeeeeeeecCCCCCCCCCCCcccccCcC
Q 003076 253 TEAWSGWFTEFGGAVHRRPVQDLAFAVARF-----------IQK-----GGSFFNYYMYHGGTNFGRTAGGPFITTSYDY 316 (850)
Q Consensus 253 ~E~~~Gwf~~wG~~~~~~~~~~~~~~~~~~-----------l~~-----g~s~~n~YM~hGGTNfG~~~G~~~~~TSYDy 316 (850)
+|+--+ .|.. ....++.-..+.+. ... +..- .-|+.+|| .||-+. -..++--
T Consensus 511 ~Ey~ha----mgn~--~g~~~~yw~~~~~~p~l~GgfiW~~~D~~~~~~~~~G-~~~~~ygG-d~g~~p----~~~~f~~ 578 (1021)
T PRK10340 511 CEYAHA----MGNG--PGGLTEYQNVFYKHDCIQGHYVWEWCDHGIQAQDDNG-NVWYKYGG-DYGDYP----NNYNFCI 578 (1021)
T ss_pred EchHhc----cCCC--CCCHHHHHHHHHhCCceeEEeeeecCcccccccCCCC-CEEEEECC-CCCCCC----CCcCccc
Confidence 998421 1110 00122222222110 000 0000 12445565 254321 0122223
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHH
Q 003076 317 DAPLDEYGLMRQPKYGHLKQLHEAI 341 (850)
Q Consensus 317 dApl~E~G~~~t~ky~~lr~l~~~~ 341 (850)
+.-++-+|.+ .|.|..+|.+.+-+
T Consensus 579 ~Glv~~dr~p-~p~~~e~k~~~~pv 602 (1021)
T PRK10340 579 DGLIYPDQTP-GPGLKEYKQVIAPV 602 (1021)
T ss_pred ceeECCCCCC-ChhHHHHHHhcceE
Confidence 4678889998 69999999876543
No 13
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=98.74 E-value=2.9e-07 Score=115.98 Aligned_cols=151 Identities=21% Similarity=0.198 Sum_probs=107.6
Q ss_pred cceeEEEecccEEECCeEeEEEEEEecCC------CCCHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccch
Q 003076 25 QCSTVTYDRKAILINGQRRILISGSIHYP------RSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYD 98 (850)
Q Consensus 25 ~~~~v~~~~~~~~idG~p~~~~sG~~Hy~------r~~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~d 98 (850)
.=.+|++++..|+|||+|+++-+...|.. +++++.|+++|+.||++|+|+|++ .|-|.
T Consensus 332 GfR~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~-----sHyP~----------- 395 (1027)
T PRK09525 332 GFRKVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC-----SHYPN----------- 395 (1027)
T ss_pred EEEEEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCC-----------
Confidence 33457788899999999999999999842 358999999999999999999999 35443
Q ss_pred HHHHHHHHHHcCcEEEEecCceeccccCCCCCCcccccCCCeEeecCChhhHHHHHHHHHHHHHHHhccccccccCCceE
Q 003076 99 LVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPII 178 (850)
Q Consensus 99 l~~fl~la~~~gL~vilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII 178 (850)
=.+|+++|.|+||+|+-... . |+ .|-.|.. .-.+||.|++++..=+++++.+.++|| .||
T Consensus 396 ~p~fydlcDe~GilV~dE~~-~---e~-hg~~~~~--------~~~~dp~~~~~~~~~~~~mV~RdrNHP-------SIi 455 (1027)
T PRK09525 396 HPLWYELCDRYGLYVVDEAN-I---ET-HGMVPMN--------RLSDDPRWLPAMSERVTRMVQRDRNHP-------SII 455 (1027)
T ss_pred CHHHHHHHHHcCCEEEEecC-c---cc-cCCcccc--------CCCCCHHHHHHHHHHHHHHHHhCCCCC-------EEE
Confidence 16889999999999997752 1 11 1111210 014578887777666677777776554 899
Q ss_pred EeccccccCCCccccCcchHHHHHHHHHHHhcCCCCcceeee
Q 003076 179 LSQIENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPWVMC 220 (850)
Q Consensus 179 ~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~ 220 (850)
||=+-||-+. + ...+.+.+.+++..-.-|....
T Consensus 456 ~WSlgNE~~~-----g----~~~~~l~~~~k~~DptRpV~y~ 488 (1027)
T PRK09525 456 IWSLGNESGH-----G----ANHDALYRWIKSNDPSRPVQYE 488 (1027)
T ss_pred EEeCccCCCc-----C----hhHHHHHHHHHhhCCCCcEEEC
Confidence 9999999653 2 1234566666666655665544
No 14
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=98.60 E-value=9.5e-07 Score=107.88 Aligned_cols=139 Identities=21% Similarity=0.288 Sum_probs=108.7
Q ss_pred cccceeEEEecccEEECCeEeEEEEEEecCCC-----C-CHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeecc
Q 003076 23 LIQCSTVTYDRKAILINGQRRILISGSIHYPR-----S-TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS 96 (850)
Q Consensus 23 ~~~~~~v~~~~~~~~idG~p~~~~sG~~Hy~r-----~-~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~ 96 (850)
++.=.+|.+++..|+|||||+++-+..-|.+- . ..+.-+++|++||++|+|+|+|- |-|.
T Consensus 280 ~iGfR~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~--------- 345 (808)
T COG3250 280 RIGFRTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTS-----HYPN--------- 345 (808)
T ss_pred eeccEEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEec-----CCCC---------
Confidence 45556789999999999999999999999744 3 45558899999999999999994 6665
Q ss_pred chHHHHHHHHHHcCcEEEEecCceeccccCCCCCCcccccCCCeEeecCChhhHHHHHHHHHHHHHHHhccccccccCCc
Q 003076 97 YDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGP 176 (850)
Q Consensus 97 ~dl~~fl~la~~~gL~vilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGp 176 (850)
=..|++||.++||+||--+ ..||-. .| +||.|++.+..=+++++++.++|| .
T Consensus 346 --~~~~ydLcDelGllV~~Ea----~~~~~~--~~-------------~~~~~~k~~~~~i~~mver~knHP-------S 397 (808)
T COG3250 346 --SEEFYDLCDELGLLVIDEA----MIETHG--MP-------------DDPEWRKEVSEEVRRMVERDRNHP-------S 397 (808)
T ss_pred --CHHHHHHHHHhCcEEEEec----chhhcC--CC-------------CCcchhHHHHHHHHHHHHhccCCC-------c
Confidence 2789999999999999884 233322 22 789999999988899988888666 8
Q ss_pred eEEeccccccCCCccccCcchHHHHHHHHHHH
Q 003076 177 IILSQIENEYGPESKSLGAAGHAYVNWAAKMA 208 (850)
Q Consensus 177 II~~QiENEyg~~~~~~~~~~~~y~~~l~~~~ 208 (850)
||||=+.||-|. |.....-..|.++.-
T Consensus 398 IiiWs~gNE~~~-----g~~~~~~~~~~k~~d 424 (808)
T COG3250 398 IIIWSLGNESGH-----GSNHWALYRWFKASD 424 (808)
T ss_pred EEEEeccccccC-----ccccHHHHHHHhhcC
Confidence 999999999774 223344445555443
No 15
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.13 E-value=1.1e-05 Score=76.03 Aligned_cols=84 Identities=27% Similarity=0.389 Sum_probs=56.0
Q ss_pred hhhhcCCCCCccEEEEEEEeccCCCcccccCCCCce-eee-CCcccEEEEEECCEEEEEEEcccccceeEEeeccc-ccC
Q 003076 460 LEQINITRDTSDYLWYMTSVEISSSESFLRGGQKPT-LTV-ESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPAN-LRA 536 (850)
Q Consensus 460 mEql~~t~d~~GYl~Y~T~i~~~~~~~~~~~g~~~~-L~v-~~~~D~a~VfVng~~vG~~~~~~~~~~~~~~~~i~-l~~ 536 (850)
.+..+..++..|++|||+++.....+. ... |.+ .+...+++|||||+++|...... ....+|+.|.. |+.
T Consensus 24 ~l~~~~~g~~~g~~~Yrg~F~~~~~~~------~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~-g~q~tf~~p~~il~~ 96 (111)
T PF13364_consen 24 VLYASDYGFHAGYLWYRGTFTGTGQDT------SLTPLNIQGGNAFRASVWVNGWFLGSYWPGI-GPQTTFSVPAGILKY 96 (111)
T ss_dssp STCCGCGTSSSCEEEEEEEEETTTEEE------EEE-EEECSSTTEEEEEEETTEEEEEEETTT-ECCEEEEE-BTTBTT
T ss_pred eeccCccccCCCCEEEEEEEeCCCcce------eEEEEeccCCCceEEEEEECCEEeeeecCCC-CccEEEEeCceeecC
Confidence 455555567999999999997533321 112 333 46799999999999999987322 22344544543 455
Q ss_pred CCCeEEEEEecCCc
Q 003076 537 GINKIALLSIAVGL 550 (850)
Q Consensus 537 g~~~L~ILven~Gr 550 (850)
+.+.|.+|+.+||.
T Consensus 97 ~n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 97 GNNVLVVLWDNMGH 110 (111)
T ss_dssp CEEEEEEEEE-STT
T ss_pred CCEEEEEEEeCCCC
Confidence 66788999999995
No 16
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=98.08 E-value=2e-05 Score=78.73 Aligned_cols=98 Identities=24% Similarity=0.337 Sum_probs=70.9
Q ss_pred CCCccEEEEEEEeccCCCcccccCCCCceeeeCCcccEEEEEECCEEEEEEEcccccceeEEeecccccCCC-CeEEEEE
Q 003076 467 RDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGI-NKIALLS 545 (850)
Q Consensus 467 ~d~~GYl~Y~T~i~~~~~~~~~~~g~~~~L~v~~~~D~a~VfVng~~vG~~~~~~~~~~~~~~~~i~l~~g~-~~L~ILv 545 (850)
....|+.|||+++..+... .+.+..|.++++++.+.|||||+++|...... ..+.++++-.++.|. |+|.|.|
T Consensus 64 ~~~~~~~wYr~~f~lp~~~----~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~--~~~~~dIt~~l~~g~~N~l~V~v 137 (167)
T PF02837_consen 64 WDYSGYAWYRRTFTLPADW----KGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY--TPFEFDITDYLKPGEENTLAVRV 137 (167)
T ss_dssp STCCSEEEEEEEEEESGGG----TTSEEEEEESEEESEEEEEETTEEEEEEESTT--S-EEEECGGGSSSEEEEEEEEEE
T ss_pred cccCceEEEEEEEEeCchh----cCceEEEEeccceEeeEEEeCCeEEeeeCCCc--CCeEEeChhhccCCCCEEEEEEE
Confidence 4488999999999886432 34557899999999999999999999986542 345666666788888 9999999
Q ss_pred ecCCcccccCCCC-ccccceeccEEE
Q 003076 546 IAVGLPNVGLHYE-TWETGVRGAVVL 570 (850)
Q Consensus 546 en~GrvNyG~~~~-~~~KGI~g~V~l 570 (850)
.+...-.+-+.+. ....||.++|.|
T Consensus 138 ~~~~~~~~~~~~~~~~~~GI~r~V~L 163 (167)
T PF02837_consen 138 DNWPDGSTIPGFDYFNYAGIWRPVWL 163 (167)
T ss_dssp ESSSGGGCGBSSSEEE--EEESEEEE
T ss_pred eecCCCceeecCcCCccCccccEEEE
Confidence 8655433311111 346899999987
No 17
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.98 E-value=2e-05 Score=84.65 Aligned_cols=116 Identities=21% Similarity=0.356 Sum_probs=87.7
Q ss_pred CCccCCCCceeeeeccchHHHHHHHHHHcCcEEEEecCceeccccCCCCCCcccccCCCeEeecCChhhHHHHHHHHHHH
Q 003076 81 WNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKI 160 (850)
Q Consensus 81 Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l 160 (850)
|...||++|+|||+ .++++++.|+++||.| |..+-+ |.. ..|.|+...+ .+..++++.+|++++
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v--~gH~l~---W~~-~~P~W~~~~~-------~~~~~~~~~~~i~~v 66 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKV--RGHTLV---WHS-QTPDWVFNLS-------KETLLARLENHIKTV 66 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEE--EEEEEe---ecc-cCCHhhhcCC-------HHHHHHHHHHHHHHH
Confidence 88999999999999 7999999999999998 433333 533 6899997533 345678888888888
Q ss_pred HHHHhccccccccCCceEEeccccccCCCcc------c-cCcchHHHHHHHHHHHhcCCCCcceeeeC
Q 003076 161 VQMMKNEKLFASQGGPIILSQIENEYGPESK------S-LGAAGHAYVNWAAKMAVGLDTGVPWVMCK 221 (850)
Q Consensus 161 ~~~l~~~~~~~~~gGpII~~QiENEyg~~~~------~-~~~~~~~y~~~l~~~~~~~g~~vp~~~~~ 221 (850)
+.+++ |.|..|+|=||--.... . +...+.+|+...-+.+|+...++.++.++
T Consensus 67 ~~ry~---------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Nd 125 (254)
T smart00633 67 VGRYK---------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYND 125 (254)
T ss_pred HHHhC---------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEec
Confidence 88876 46889999999543210 0 11234578888888899888888888875
No 18
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=97.94 E-value=0.00014 Score=79.56 Aligned_cols=157 Identities=13% Similarity=0.138 Sum_probs=88.5
Q ss_pred cccceeEEEecccEE--ECCeEeEEEEEEecCCC-----------CCHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCc
Q 003076 23 LIQCSTVTYDRKAIL--INGQRRILISGSIHYPR-----------STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPG 89 (850)
Q Consensus 23 ~~~~~~v~~~~~~~~--idG~p~~~~sG~~Hy~r-----------~~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G 89 (850)
...-..|++.++.|+ .+|++|+|.+-.+.+.- ..++.|+.++..||++|+|||++|-.
T Consensus 5 ~~~~~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~v--------- 75 (314)
T PF03198_consen 5 AAAVPPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSV--------- 75 (314)
T ss_dssp STTS--EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES-----------
T ss_pred hccCCCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEe---------
Confidence 345567888899999 78999999987776522 25788999999999999999999832
Q ss_pred eeeeeccchHHHHHHHHHHcCcEEEEecCceeccccCCCCCCcccccCCCeEeecCCh--hhHHHHHHHHHHHHHHHhcc
Q 003076 90 HYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNG--PFKVAMQGFTQKIVQMMKNE 167 (850)
Q Consensus 90 ~fdF~g~~dl~~fl~la~~~gL~vilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~d~--~y~~~~~~~~~~l~~~l~~~ 167 (850)
+-..|=++++++.+++||||||-.+. |...+-..+| .|-...-.-+.++++.++.+
T Consensus 76 ----dp~~nHd~CM~~~~~aGIYvi~Dl~~------------------p~~sI~r~~P~~sw~~~l~~~~~~vid~fa~Y 133 (314)
T PF03198_consen 76 ----DPSKNHDECMSAFADAGIYVILDLNT------------------PNGSINRSDPAPSWNTDLLDRYFAVIDAFAKY 133 (314)
T ss_dssp -----TTS--HHHHHHHHHTT-EEEEES-B------------------TTBS--TTS------HHHHHHHHHHHHHHTT-
T ss_pred ----CCCCCHHHHHHHHHhCCCEEEEecCC------------------CCccccCCCCcCCCCHHHHHHHHHHHHHhccC
Confidence 22246799999999999999999642 3333444455 55444334445566777744
Q ss_pred ccccccCCceEEeccccccCCCccc--cCcchHHHHHHHHHHHhcCCC-Ccce
Q 003076 168 KLFASQGGPIILSQIENEYGPESKS--LGAAGHAYVNWAAKMAVGLDT-GVPW 217 (850)
Q Consensus 168 ~~~~~~gGpII~~QiENEyg~~~~~--~~~~~~~y~~~l~~~~~~~g~-~vp~ 217 (850)
+ +++++=+-||.-..... -.+.-|+.++-+|+-+++.+. .+|+
T Consensus 134 ~-------N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPV 179 (314)
T PF03198_consen 134 D-------NTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPV 179 (314)
T ss_dssp T-------TEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----E
T ss_pred C-------ceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 3 89999999998653211 112344555555555555554 4453
No 19
>PLN02705 beta-amylase
Probab=97.84 E-value=5e-05 Score=88.10 Aligned_cols=81 Identities=19% Similarity=0.313 Sum_probs=64.6
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCccCC-CCceeeeeccchHHHHHHHHHHcCcE--EEEecCceeccccCCC----
Q 003076 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-SPGHYNFEGSYDLVRFIKTVQRVGLY--AHLRIGPYVCAEWNFG---- 128 (850)
Q Consensus 56 ~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp-~~G~fdF~g~~dl~~fl~la~~~gL~--vilrpGPyicaEw~~G---- 128 (850)
.++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..+++++++++||+ |||.+ --|+. +-|
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSF--HqCGG-NVGD~~~ 339 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAF--HEYGG-NASGNVM 339 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--eccCC-CCCCccc
Confidence 4566788999999999999999999999998 699999996 67779999999999 55654 23443 112
Q ss_pred -CCCccccc----CCCeEe
Q 003076 129 -GFPVWLKY----VPGISF 142 (850)
Q Consensus 129 -G~P~WL~~----~p~~~~ 142 (850)
-||.|+.+ +|+|.+
T Consensus 340 IPLP~WV~e~g~~nPDiff 358 (681)
T PLN02705 340 ISLPQWVLEIGKDNQDIFF 358 (681)
T ss_pred ccCCHHHHHhcccCCCcee
Confidence 28999985 577643
No 20
>PLN02905 beta-amylase
Probab=97.80 E-value=7.3e-05 Score=87.05 Aligned_cols=113 Identities=23% Similarity=0.453 Sum_probs=80.7
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCccCC-CCceeeeeccchHHHHHHHHHHcCcE--EEEecCceeccccCCC----
Q 003076 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-SPGHYNFEGSYDLVRFIKTVQRVGLY--AHLRIGPYVCAEWNFG---- 128 (850)
Q Consensus 56 ~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp-~~G~fdF~g~~dl~~fl~la~~~gL~--vilrpGPyicaEw~~G---- 128 (850)
.++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..+++++++++||+ |||.+ --|+- +-|
T Consensus 284 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSF--HqCGG-NVGD~~~ 357 (702)
T PLN02905 284 DPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSF--HECGG-NVGDDVC 357 (702)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4555778999999999999999999999998 799999996 67779999999999 45554 23433 112
Q ss_pred -CCCccccc----CCCeEeec--------------CC----------hhhHHHHHHHHHHHHHHHhccccccccCCceEE
Q 003076 129 -GFPVWLKY----VPGISFRT--------------DN----------GPFKVAMQGFTQKIVQMMKNEKLFASQGGPIIL 179 (850)
Q Consensus 129 -G~P~WL~~----~p~~~~R~--------------~d----------~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~ 179 (850)
-||.|+.+ +|+|.+-. ++ +.|.+.|+.|-..+.+.|. +|.|.-
T Consensus 358 IPLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~--------~g~I~e 429 (702)
T PLN02905 358 IPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFFE--------DGVISM 429 (702)
T ss_pred ccCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHhc--------CCceEE
Confidence 28999985 57764311 11 3465555555555444442 367888
Q ss_pred ecc
Q 003076 180 SQI 182 (850)
Q Consensus 180 ~Qi 182 (850)
|||
T Consensus 430 I~V 432 (702)
T PLN02905 430 VEV 432 (702)
T ss_pred EEe
Confidence 887
No 21
>PLN02801 beta-amylase
Probab=97.75 E-value=9.3e-05 Score=84.85 Aligned_cols=80 Identities=26% Similarity=0.520 Sum_probs=63.7
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCccCC-CCceeeeeccchHHHHHHHHHHcCcEE--EEecCceeccccCCC----
Q 003076 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-SPGHYNFEGSYDLVRFIKTVQRVGLYA--HLRIGPYVCAEWNFG---- 128 (850)
Q Consensus 56 ~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp-~~G~fdF~g~~dl~~fl~la~~~gL~v--ilrpGPyicaEw~~G---- 128 (850)
.++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| -.+++++++++||++ |+.+ --|+- +-|
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~ 108 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSF--HQCGG-NVGDAVN 108 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 5667889999999999999999999999998 699999996 677799999999994 5554 23333 111
Q ss_pred -CCCccccc----CCCeE
Q 003076 129 -GFPVWLKY----VPGIS 141 (850)
Q Consensus 129 -G~P~WL~~----~p~~~ 141 (850)
-||.|+.+ +|++.
T Consensus 109 IpLP~WV~~~g~~~pDi~ 126 (517)
T PLN02801 109 IPIPQWVRDVGDSDPDIF 126 (517)
T ss_pred ccCCHHHHHhhccCCCce
Confidence 28999984 57764
No 22
>PLN00197 beta-amylase; Provisional
Probab=97.72 E-value=0.00012 Score=84.70 Aligned_cols=81 Identities=27% Similarity=0.548 Sum_probs=64.6
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCccCC-CCceeeeeccchHHHHHHHHHHcCcE--EEEecCceeccccCCC----
Q 003076 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-SPGHYNFEGSYDLVRFIKTVQRVGLY--AHLRIGPYVCAEWNFG---- 128 (850)
Q Consensus 56 ~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp-~~G~fdF~g~~dl~~fl~la~~~gL~--vilrpGPyicaEw~~G---- 128 (850)
.++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..+++++++++||+ ||+.+ --|+- +-|
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSF--HqCGG-NVGD~~~ 198 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSF--HQCGG-NVGDSCT 198 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 5667889999999999999999999999998 799999997 67779999999999 45554 23433 112
Q ss_pred -CCCccccc----CCCeEe
Q 003076 129 -GFPVWLKY----VPGISF 142 (850)
Q Consensus 129 -G~P~WL~~----~p~~~~ 142 (850)
-||.|+.+ +|++.+
T Consensus 199 IpLP~WV~~~g~~dpDiff 217 (573)
T PLN00197 199 IPLPKWVVEEVDKDPDLAY 217 (573)
T ss_pred ccCCHHHHHhhccCCCcee
Confidence 28999975 577643
No 23
>TIGR03356 BGL beta-galactosidase.
Probab=97.68 E-value=4.6e-05 Score=88.00 Aligned_cols=97 Identities=15% Similarity=0.184 Sum_probs=79.3
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCccCCC-CceeeeeccchHHHHHHHHHHcCcEEEEecCceeccccCCCCCCccccc
Q 003076 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (850)
Q Consensus 58 ~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~-~G~fdF~g~~dl~~fl~la~~~gL~vilrpGPyicaEw~~GG~P~WL~~ 136 (850)
..|+++|+.||++|+|++++-|.|...+|. +|++|.+|....+++|+.|.++||.+|+--= .=.+|.||.+
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~--------Hfd~P~~l~~ 125 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY--------HWDLPQALED 125 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec--------cCCccHHHHh
Confidence 569999999999999999999999999999 7899988888999999999999999886631 2348999986
Q ss_pred CCCeEeecCChhhHHHHHHHHHHHHHHHhc
Q 003076 137 VPGISFRTDNGPFKVAMQGFTQKIVQMMKN 166 (850)
Q Consensus 137 ~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~ 166 (850)
..+- .++...++..+|.+.+++++++
T Consensus 126 ~gGw----~~~~~~~~f~~ya~~~~~~~~d 151 (427)
T TIGR03356 126 RGGW----LNRDTAEWFAEYAAVVAERLGD 151 (427)
T ss_pred cCCC----CChHHHHHHHHHHHHHHHHhCC
Confidence 5442 2466667777777777777763
No 24
>PLN02803 beta-amylase
Probab=97.67 E-value=0.00015 Score=83.59 Aligned_cols=81 Identities=23% Similarity=0.530 Sum_probs=63.6
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCccCC-CCceeeeeccchHHHHHHHHHHcCcEE--EEecCceeccccCCC----
Q 003076 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-SPGHYNFEGSYDLVRFIKTVQRVGLYA--HLRIGPYVCAEWNFG---- 128 (850)
Q Consensus 56 ~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp-~~G~fdF~g~~dl~~fl~la~~~gL~v--ilrpGPyicaEw~~G---- 128 (850)
.++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..+++++++++||++ ||.+ --|+- +-|
T Consensus 105 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~ 178 (548)
T PLN02803 105 KPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSF--HQCGG-NVGDSCS 178 (548)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4455678999999999999999999999998 599999997 677799999999994 4554 23333 111
Q ss_pred -CCCccccc----CCCeEe
Q 003076 129 -GFPVWLKY----VPGISF 142 (850)
Q Consensus 129 -G~P~WL~~----~p~~~~ 142 (850)
-||.|+.+ +|+|.+
T Consensus 179 IpLP~WV~e~~~~~pDi~f 197 (548)
T PLN02803 179 IPLPPWVLEEMSKNPDLVY 197 (548)
T ss_pred ccCCHHHHHhhhcCCCceE
Confidence 28999975 577744
No 25
>PLN02161 beta-amylase
Probab=97.57 E-value=0.00027 Score=81.11 Aligned_cols=81 Identities=20% Similarity=0.354 Sum_probs=63.5
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCccCC-CCceeeeeccchHHHHHHHHHHcCcEE--EEecCceeccccCCC----
Q 003076 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-SPGHYNFEGSYDLVRFIKTVQRVGLYA--HLRIGPYVCAEWNFG---- 128 (850)
Q Consensus 56 ~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp-~~G~fdF~g~~dl~~fl~la~~~gL~v--ilrpGPyicaEw~~G---- 128 (850)
.++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..+++++++++||++ ||.+ --|+- +-|
T Consensus 115 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NvGd~~~ 188 (531)
T PLN02161 115 RLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCF--HSNMH-LFGGKGG 188 (531)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccC
Confidence 4555678999999999999999999999998 799999996 677799999999994 4553 23332 111
Q ss_pred -CCCccccc----CCCeEe
Q 003076 129 -GFPVWLKY----VPGISF 142 (850)
Q Consensus 129 -G~P~WL~~----~p~~~~ 142 (850)
-||.|+.+ +|++.+
T Consensus 189 IpLP~WV~~~g~~~pDi~f 207 (531)
T PLN02161 189 ISLPLWIREIGDVNKDIYY 207 (531)
T ss_pred ccCCHHHHhhhccCCCceE
Confidence 28999984 577754
No 26
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.54 E-value=0.00028 Score=77.46 Aligned_cols=225 Identities=23% Similarity=0.339 Sum_probs=112.4
Q ss_pred cccEE-ECCeEeEEEEEEecC---CCCCHhHHHHHHHHHHHCCCCEEEEccc--CCcc--------CC----CCceeeee
Q 003076 33 RKAIL-INGQRRILISGSIHY---PRSTPEMWEDLIRKAKDGGLDVIDTYVF--WNGH--------EP----SPGHYNFE 94 (850)
Q Consensus 33 ~~~~~-idG~p~~~~sG~~Hy---~r~~~~~W~~~l~k~ka~G~NtV~~yv~--Wn~h--------Ep----~~G~fdF~ 94 (850)
++.|. -||+||+.++ .-.+ .|...++|+.-|+..|+-|||+|++=|+ |.-+ .| .++.+||+
T Consensus 2 ~r~f~~~dG~Pff~lg-dT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~ 80 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLG-DTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFT 80 (289)
T ss_dssp SSSEEETTS-B--EEE-EE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------T
T ss_pred CceEecCCCCEEeehh-HHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCC
Confidence 45666 8999999998 5555 3568899999999999999999998766 4322 11 22337776
Q ss_pred cc-----chHHHHHHHHHHcCcEEEEec---CceeccccCCCCCCcccccCCCeEeecCChhhHHHHHHHHHHHHHHHhc
Q 003076 95 GS-----YDLVRFIKTVQRVGLYAHLRI---GPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKN 166 (850)
Q Consensus 95 g~-----~dl~~fl~la~~~gL~vilrp---GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~ 166 (850)
.- ..|++.|+.|++.||.+-|-| +||.-+-|-.| | ..| =.+.+++|.+.|+++++.
T Consensus 81 ~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~--~------~~m--------~~e~~~~Y~~yv~~Ry~~ 144 (289)
T PF13204_consen 81 RPNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG--P------NIM--------PPENAERYGRYVVARYGA 144 (289)
T ss_dssp T----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH---------T------TSS---------HHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc--c------cCC--------CHHHHHHHHHHHHHHHhc
Confidence 53 489999999999999965432 33433344333 1 111 136688999999999995
Q ss_pred cccccccCCceEEeccccccCCCccccCcchHHHHHHHHHHHhcCCCCcc-eeeeCCC-CCC----C-cccc---CCCCc
Q 003076 167 EKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVP-WVMCKED-DAP----D-PVIN---SCNGF 236 (850)
Q Consensus 167 ~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp-~~~~~~~-~~~----~-~~~~---~~~g~ 236 (850)
.+ +|| |=|-||+ . ......++.+.+.+.+++..-.-+ .++..+. ..+ + +-+. ...|-
T Consensus 145 ~~-------Nvi-W~l~gd~-~----~~~~~~~~w~~~~~~i~~~dp~~L~T~H~~~~~~~~~~~~~~~Wldf~~~Qsgh 211 (289)
T PF13204_consen 145 YP-------NVI-WILGGDY-F----DTEKTRADWDAMARGIKENDPYQLITIHPCGRTSSPDWFHDEPWLDFNMYQSGH 211 (289)
T ss_dssp -S-------SEE-EEEESSS-------TTSSHHHHHHHHHHHHHH--SS-EEEEE-BTEBTHHHHTT-TT--SEEEB--S
T ss_pred CC-------CCE-EEecCcc-C----CCCcCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCcchhhcCCCcceEEEeecCC
Confidence 53 455 5688998 1 123667777788887776543222 2222221 111 0 0000 00111
Q ss_pred cc---cc-------CC-CCCCCCCeEeeee-ccccccccCCCCCCCCHHHHHHHHHHHHHhCC
Q 003076 237 YC---DA-------FS-PNKPYKPTLWTEA-WSGWFTEFGGAVHRRPVQDLAFAVARFIQKGG 287 (850)
Q Consensus 237 ~~---~~-------~~-~~~p~~P~~~~E~-~~Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~ 287 (850)
.. +. .. +..|.+|.+..|- |.|....+.+.....+++++...+=+-+-+|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa 274 (289)
T PF13204_consen 212 NRYDQDNWYYLPEEFDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA 274 (289)
T ss_dssp --TT--THHHH--HHHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT-
T ss_pred CcccchHHHHHhhhhhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC
Confidence 11 11 11 4568899999995 55554433333344577887666555566666
No 27
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.29 E-value=0.00033 Score=79.10 Aligned_cols=112 Identities=19% Similarity=0.329 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCccCCC-CceeeeeccchHHHHHHHHHHcCcEEE--EecCceecc----ccCCCCCC
Q 003076 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGSYDLVRFIKTVQRVGLYAH--LRIGPYVCA----EWNFGGFP 131 (850)
Q Consensus 59 ~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~-~G~fdF~g~~dl~~fl~la~~~gL~vi--lrpGPyica----Ew~~GG~P 131 (850)
.-+..|+++|++|+..|.+.|.|.+.|.. |++|||+| -+++++++++.||++. +.+ --|+ ..-+=-||
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsf--H~cGgNvgD~~~IpLP 91 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSG---YRELFEMVRDAGLKLQVVMSF--HQCGGNVGDDCNIPLP 91 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HH---HHHHHHHHHHTT-EEEEEEE---S-BSSSTTSSSEB-S-
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEee--ecCCCCCCCccCCcCC
Confidence 45778999999999999999999999997 99999996 7788999999999955 443 2232 11111379
Q ss_pred ccccc---CCCeEeecC--------------ChhhHHHHHHHHHHHHHHHhccccccccCCceEEecc
Q 003076 132 VWLKY---VPGISFRTD--------------NGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQI 182 (850)
Q Consensus 132 ~WL~~---~p~~~~R~~--------------d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 182 (850)
.|+.+ ..+|.+... ... ++.-+.|++.....++ .+. +.|..|||
T Consensus 92 ~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~--~~~----~~I~~I~v 152 (402)
T PF01373_consen 92 SWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFS--DYL----STITEIQV 152 (402)
T ss_dssp HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCH--HHH----TGEEEEEE
T ss_pred HHHHhccccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHH--HHH----hhheEEEe
Confidence 99974 225532110 112 4555566666666666 332 57777776
No 28
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=97.09 E-value=0.0021 Score=70.34 Aligned_cols=133 Identities=19% Similarity=0.267 Sum_probs=100.9
Q ss_pred HHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEEEecCceeccccCCCCCCcccccCCCeEeecCC
Q 003076 67 AKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDN 146 (850)
Q Consensus 67 ~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~d 146 (850)
.|+.+.=|-+.-.=|+..||++|.|+|+ --++..+.|++|||.+ |-=+.| |-+ -.|.||..+. -+-
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~l--hGHtLv---W~~-q~P~W~~~~e-----~~~ 120 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFE---AADAIANFARKHNMPL--HGHTLV---WHS-QVPDWLFGDE-----LSK 120 (345)
T ss_pred HhhhcccccccccccccccCCCCccCcc---chHHHHHHHHHcCCee--ccceee---ecc-cCCchhhccc-----cCh
Confidence 5565555555667799999999999999 4689999999999954 333333 433 6899998632 234
Q ss_pred hhhHHHHHHHHHHHHHHHhccccccccCCceEEeccccccCC----Ccc---ccCcchHHHHHHHHHHHhcCCCCcceee
Q 003076 147 GPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGP----ESK---SLGAAGHAYVNWAAKMAVGLDTGVPWVM 219 (850)
Q Consensus 147 ~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~----~~~---~~~~~~~~y~~~l~~~~~~~g~~vp~~~ 219 (850)
+..++.+++++..++.+.+ |-|+.|-|=||-=. +.. ..+..+.+|+++.-+.+|+.+-+--++.
T Consensus 121 ~~~~~~~e~hI~tV~~rYk---------g~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ 191 (345)
T COG3693 121 EALAKMVEEHIKTVVGRYK---------GSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVI 191 (345)
T ss_pred HHHHHHHHHHHHHHHHhcc---------CceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEe
Confidence 7789999999999999998 35899999999632 111 1224678999999999999887777887
Q ss_pred eCC
Q 003076 220 CKE 222 (850)
Q Consensus 220 ~~~ 222 (850)
++-
T Consensus 192 NDY 194 (345)
T COG3693 192 NDY 194 (345)
T ss_pred ecc
Confidence 774
No 29
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=96.95 E-value=0.0011 Score=73.82 Aligned_cols=157 Identities=17% Similarity=0.281 Sum_probs=108.1
Q ss_pred EEEEEecCCCCCHh-HHHHHHHHHHHCCCCEEEEc--ccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEEEecCcee
Q 003076 45 LISGSIHYPRSTPE-MWEDLIRKAKDGGLDVIDTY--VFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYV 121 (850)
Q Consensus 45 ~~sG~~Hy~r~~~~-~W~~~l~k~ka~G~NtV~~y--v~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vilrpGPyi 121 (850)
.++..++..++..+ ..++ +-..-||.|..- .-|...||.+|+|||+ ..+++++.|+++||.|---+ -+
T Consensus 11 ~~G~av~~~~~~~~~~~~~----~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH~--Lv 81 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDPRYRE----LFAKHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGHT--LV 81 (320)
T ss_dssp EEEEEEBGGGHTHHHHHHH----HHHHH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEEE--EE
T ss_pred CEEEEechhHcCCcHHHHH----HHHHhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeeee--EE
Confidence 68899998887654 4444 444568988874 6699999999999999 79999999999999875321 11
Q ss_pred ccccCCCCCCcccccCCCeEeecCChhhHHHHHHHHHHHHHHHhccccccccCCceEEeccccccCCCcc---------c
Q 003076 122 CAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESK---------S 192 (850)
Q Consensus 122 caEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~---------~ 192 (850)
|.. ..|.|+...+... ....+...+++++++++++.++++. |.|.+|-|=||-=.... -
T Consensus 82 ---W~~-~~P~w~~~~~~~~-~~~~~~~~~~l~~~I~~v~~~y~~~-------g~i~~WDVvNE~i~~~~~~~~~r~~~~ 149 (320)
T PF00331_consen 82 ---WHS-QTPDWVFNLANGS-PDEKEELRARLENHIKTVVTRYKDK-------GRIYAWDVVNEAIDDDGNPGGLRDSPW 149 (320)
T ss_dssp ---ESS-SS-HHHHTSTTSS-BHHHHHHHHHHHHHHHHHHHHTTTT-------TTESEEEEEES-B-TTSSSSSBCTSHH
T ss_pred ---Ecc-cccceeeeccCCC-cccHHHHHHHHHHHHHHHHhHhccc-------cceEEEEEeeecccCCCccccccCChh
Confidence 434 7899998751110 0001247888999999998888721 78999999999633211 0
Q ss_pred cCcchHHHHHHHHHHHhcCCCCcceeeeCC
Q 003076 193 LGAAGHAYVNWAAKMAVGLDTGVPWVMCKE 222 (850)
Q Consensus 193 ~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~ 222 (850)
+...+.+|+...-+.+++...++.+|.++-
T Consensus 150 ~~~lG~~yi~~aF~~A~~~~P~a~L~~NDy 179 (320)
T PF00331_consen 150 YDALGPDYIADAFRAAREADPNAKLFYNDY 179 (320)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTSEEEEEES
T ss_pred hhcccHhHHHHHHHHHHHhCCCcEEEeccc
Confidence 122346788888888888877888888874
No 30
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.72 E-value=0.0019 Score=75.27 Aligned_cols=98 Identities=16% Similarity=0.218 Sum_probs=74.0
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCccCCC--CceeeeeccchHHHHHHHHHHcCcEEEEecCceeccccCCCCCCccc
Q 003076 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPS--PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWL 134 (850)
Q Consensus 57 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~--~G~fdF~g~~dl~~fl~la~~~gL~vilrpGPyicaEw~~GG~P~WL 134 (850)
-..|+++|+.||++|+|+.++-+.|...+|. +|++|-+|...-+++|+.+.++||..|+-- -.-.+|.||
T Consensus 57 y~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~~l 128 (455)
T PF00232_consen 57 YHRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL--------YHFDLPLWL 128 (455)
T ss_dssp HHHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--------ESS--BHHH
T ss_pred hhhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--------eecccccce
Confidence 3569999999999999999999999999999 699999999899999999999999976552 245689999
Q ss_pred ccCCCeEeecCChhhHHHHHHHHHHHHHHHhc
Q 003076 135 KYVPGISFRTDNGPFKVAMQGFTQKIVQMMKN 166 (850)
Q Consensus 135 ~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~ 166 (850)
.+.-+- .++...+.-.+|.+.+++.+.+
T Consensus 129 ~~~ggw----~~~~~~~~F~~Ya~~~~~~~gd 156 (455)
T PF00232_consen 129 EDYGGW----LNRETVDWFARYAEFVFERFGD 156 (455)
T ss_dssp HHHTGG----GSTHHHHHHHHHHHHHHHHHTT
T ss_pred eecccc----cCHHHHHHHHHHHHHHHHHhCC
Confidence 874332 2466667777777777777773
No 31
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.39 E-value=0.053 Score=54.92 Aligned_cols=135 Identities=16% Similarity=0.214 Sum_probs=79.3
Q ss_pred CCCCHhHHHHHHHHHHHCCCCEEEEcccCCccC-----CC---CceeeeeccchHHHHHHHHHHcCcEEEEecCceeccc
Q 003076 53 PRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHE-----PS---PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAE 124 (850)
Q Consensus 53 ~r~~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hE-----p~---~G~fdF~g~~dl~~fl~la~~~gL~vilrpGPyicaE 124 (850)
-.++++.|+.+++.||++|++||=+= |...+ |. ++.|.-....-|+.+|++|++.||+|++-.+ .
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~--~--- 87 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLY--F--- 87 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCC--C---
Confidence 46899999999999999999998421 22111 11 2233333445899999999999999998753 1
Q ss_pred cCCCCCCcccccCCCeEeecCChhhH-HHHHHHHHHHHHHHhccccccccCCceEEeccccccCCCccccCcchHHHHHH
Q 003076 125 WNFGGFPVWLKYVPGISFRTDNGPFK-VAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNW 203 (850)
Q Consensus 125 w~~GG~P~WL~~~p~~~~R~~d~~y~-~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~ 203 (850)
-|.|-.+ .|+... +.-++...+|.+... +....=+|=|-.|..... ....++.+.
T Consensus 88 -----~~~~w~~--------~~~~~~~~~~~~v~~el~~~yg-------~h~sf~GWYip~E~~~~~----~~~~~~~~~ 143 (166)
T PF14488_consen 88 -----DPDYWDQ--------GDLDWEAERNKQVADELWQRYG-------HHPSFYGWYIPYEIDDYN----WNAPERFAL 143 (166)
T ss_pred -----Cchhhhc--------cCHHHHHHHHHHHHHHHHHHHc-------CCCCCceEEEecccCCcc----cchHHHHHH
Confidence 1333331 222221 111223333333333 334677888888887642 234556666
Q ss_pred HHHHHhcCCCCccee
Q 003076 204 AAKMAVGLDTGVPWV 218 (850)
Q Consensus 204 l~~~~~~~g~~vp~~ 218 (850)
|.+.+++.--+.|++
T Consensus 144 l~~~lk~~s~~~Pv~ 158 (166)
T PF14488_consen 144 LGKYLKQISPGKPVM 158 (166)
T ss_pred HHHHHHHhCCCCCeE
Confidence 666665543344443
No 32
>PRK10150 beta-D-glucuronidase; Provisional
Probab=96.36 E-value=0.018 Score=69.64 Aligned_cols=100 Identities=23% Similarity=0.199 Sum_probs=69.4
Q ss_pred CCccEEEEEEEeccCCCcccccCCCCceeeeCCcccEEEEEECCEEEEEEEcccccceeEEeecccccCCCC-eEEEEEe
Q 003076 468 DTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGIN-KIALLSI 546 (850)
Q Consensus 468 d~~GYl~Y~T~i~~~~~~~~~~~g~~~~L~v~~~~D~a~VfVng~~vG~~~~~~~~~~~~~~~~i~l~~g~~-~L~ILve 546 (850)
+..|..||++++.++... .|....|.+.++...+.|||||+.||...+.. ..+.++++-.++.|.+ +|.|.|.
T Consensus 62 ~~~G~~WYrr~f~lp~~~----~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~~--~~f~~DIT~~l~~G~~n~L~V~v~ 135 (604)
T PRK10150 62 NYVGDVWYQREVFIPKGW----AGQRIVLRFGSVTHYAKVWVNGQEVMEHKGGY--TPFEADITPYVYAGKSVRITVCVN 135 (604)
T ss_pred CCcccEEEEEEEECCccc----CCCEEEEEECcccceEEEEECCEEeeeEcCCc--cceEEeCchhccCCCceEEEEEEe
Confidence 367899999999876331 34557899999999999999999999876432 3456666555777764 9999997
Q ss_pred cCCcc---cccCCCC--------------ccccceeccEEEccc
Q 003076 547 AVGLP---NVGLHYE--------------TWETGVRGAVVLHGL 573 (850)
Q Consensus 547 n~Grv---NyG~~~~--------------~~~KGI~g~V~l~g~ 573 (850)
|.-+. ..|...+ ....||.++|.|--.
T Consensus 136 n~~~~~~~p~g~~~~~~~~~~k~~~~~d~~~~~GI~r~V~L~~~ 179 (604)
T PRK10150 136 NELNWQTLPPGNVIEDGNGKKKQKYNFDFFNYAGIHRPVMLYTT 179 (604)
T ss_pred cCCCcccCCCCccccCCccccccccccccccccCCCceEEEEEc
Confidence 74211 0111100 136799999998543
No 33
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=96.30 E-value=0.01 Score=66.36 Aligned_cols=104 Identities=24% Similarity=0.407 Sum_probs=66.0
Q ss_pred HHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEEEecCceeccccCCCCCCcccccCCCe
Q 003076 61 EDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGI 140 (850)
Q Consensus 61 ~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vilrpGPyicaEw~~GG~P~WL~~~p~~ 140 (850)
+|.|+.+|+.|+|.|+.=| |+--.. .|..|.+ +..++.+.|+++||+|+|-+- |- -.|- +|+-
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv~P~~-~g~~~~~---~~~~~akrak~~Gm~vlldfH-YS---------D~Wa--DPg~ 89 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WVNPYD-GGYNDLE---DVIALAKRAKAAGMKVLLDFH-YS---------DFWA--DPGK 89 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--SS-TT-TTTTSHH---HHHHHHHHHHHTT-EEEEEE--SS---------SS----BTTB
T ss_pred CCHHHHHHhcCCCeEEEEe-ccCCcc-cccCCHH---HHHHHHHHHHHCCCeEEEeec-cc---------CCCC--CCCC
Confidence 5789999999999999988 544333 3666655 666677777889999999863 11 1222 2332
Q ss_pred Ee----e-c-CChhhHHHHHHHHHHHHHHHhccccccccCCceEEeccccccC
Q 003076 141 SF----R-T-DNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYG 187 (850)
Q Consensus 141 ~~----R-~-~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg 187 (850)
+. . . +-..-.++|..|.+.++..|++ +|=.+=||||-||..
T Consensus 90 Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~------~G~~pd~VQVGNEin 136 (332)
T PF07745_consen 90 QNKPAAWANLSFDQLAKAVYDYTKDVLQALKA------AGVTPDMVQVGNEIN 136 (332)
T ss_dssp -B--TTCTSSSHHHHHHHHHHHHHHHHHHHHH------TT--ESEEEESSSGG
T ss_pred CCCCccCCCCCHHHHHHHHHHHHHHHHHHHHH------CCCCccEEEeCcccc
Confidence 11 1 1 2345678899999999999994 455788999999963
No 34
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.24 E-value=0.011 Score=69.46 Aligned_cols=96 Identities=13% Similarity=0.151 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCccCCC--CceeeeeccchHHHHHHHHHHcCcEEEEecCceeccccCCCCCCcccc
Q 003076 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS--PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK 135 (850)
Q Consensus 58 ~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~--~G~fdF~g~~dl~~fl~la~~~gL~vilrpGPyicaEw~~GG~P~WL~ 135 (850)
..|+++++.||++|+|+.++-+-|...+|. ++++|=+|....+++|+.+.++||..++-- -.=.+|.||.
T Consensus 71 hry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL--------~H~~~P~~l~ 142 (474)
T PRK09852 71 HRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTL--------CHFDVPMHLV 142 (474)
T ss_pred hhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 447999999999999999999999999997 556787888899999999999999977653 1335899997
Q ss_pred cC-CCeEeecCChhhHHHHHHHHHHHHHHHh
Q 003076 136 YV-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (850)
Q Consensus 136 ~~-p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (850)
.. -+- .++...++..+|.+.+++++.
T Consensus 143 ~~~GGW----~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 143 TEYGSW----RNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred HhcCCC----CCHHHHHHHHHHHHHHHHHhc
Confidence 53 332 244455555555555555555
No 35
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=96.17 E-value=0.012 Score=69.00 Aligned_cols=96 Identities=14% Similarity=0.150 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCccCCC--CceeeeeccchHHHHHHHHHHcCcEEEEecCceeccccCCCCCCcccc
Q 003076 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS--PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK 135 (850)
Q Consensus 58 ~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~--~G~fdF~g~~dl~~fl~la~~~gL~vilrpGPyicaEw~~GG~P~WL~ 135 (850)
..|+++++.||++|+|+-++-+-|.-..|. +|++|-+|....+++|+.+.++||..++-- -.=.+|.||.
T Consensus 69 hry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL--------~H~dlP~~L~ 140 (477)
T PRK15014 69 GHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITL--------SHFEMPLHLV 140 (477)
T ss_pred cccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 358999999999999999999999999997 567888888899999999999999977653 1235899997
Q ss_pred cC-CCeEeecCChhhHHHHHHHHHHHHHHHh
Q 003076 136 YV-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (850)
Q Consensus 136 ~~-p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (850)
.. -| -.++...++-.+|.+.+++.++
T Consensus 141 ~~yGG----W~n~~~~~~F~~Ya~~~f~~fg 167 (477)
T PRK15014 141 QQYGS----WTNRKVVDFFVRFAEVVFERYK 167 (477)
T ss_pred HhcCC----CCChHHHHHHHHHHHHHHHHhc
Confidence 64 33 2345555666666666666665
No 36
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=96.09 E-value=0.011 Score=58.83 Aligned_cols=65 Identities=25% Similarity=0.539 Sum_probs=48.4
Q ss_pred CCceEEEEEEeCCCCC--CceEEeeCCCC-ceeEEECCeeeeecccccccCCCCccccCCCcCCccccCCCCCcceeeee
Q 003076 620 QSLKWYKAYFDAPTGN--EPLALDLRSMG-KGQVWINGQSIGRYWMAYAKGDCKTCSYAGTFRPINCQRRCGHPTQRWYH 696 (850)
Q Consensus 620 ~~p~wYk~~F~~p~~~--d~~~Ldl~g~g-KG~vwVNG~nLGRYW~~~~~g~~~~~~~~G~~~~~~~~~~cg~PQqtLYh 696 (850)
....|||.+|++|... ..++|.+.|.. ...|||||+-||+-.- | | ..- -+-
T Consensus 67 ~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~-------------~-~-----------~~~-~~d 120 (167)
T PF02837_consen 67 SGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEG-------------G-Y-----------TPF-EFD 120 (167)
T ss_dssp CSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEES-------------T-T-----------S-E-EEE
T ss_pred CceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCC-------------C-c-----------CCe-EEe
Confidence 4679999999999743 35899999865 7999999999999651 1 1 122 244
Q ss_pred cCcccccCCc-cEEEE
Q 003076 697 VPRSWLKPTK-NLLVV 711 (850)
Q Consensus 697 VP~~~Lk~g~-N~Ivv 711 (850)
|+. .|++|. |+|.|
T Consensus 121 It~-~l~~g~~N~l~V 135 (167)
T PF02837_consen 121 ITD-YLKPGEENTLAV 135 (167)
T ss_dssp CGG-GSSSEEEEEEEE
T ss_pred Chh-hccCCCCEEEEE
Confidence 764 789888 88776
No 37
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=96.08 E-value=0.017 Score=66.62 Aligned_cols=118 Identities=15% Similarity=0.127 Sum_probs=71.6
Q ss_pred CHhHH-----HHHHHHHHHCCCCEEEEcccCCccCCC----CceeeeeccchHHHHHHHHHHcCcEEEEecCceecccc-
Q 003076 56 TPEMW-----EDLIRKAKDGGLDVIDTYVFWNGHEPS----PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEW- 125 (850)
Q Consensus 56 ~~~~W-----~~~l~k~ka~G~NtV~~yv~Wn~hEp~----~G~fdF~g~~dl~~fl~la~~~gL~vilrpGPyicaEw- 125 (850)
...-| ++.+..||.+|||+||.++.|..+++. |...+=+-..-|++.|+.|++.||+|+|-.-=| +.
T Consensus 66 ~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~---~~~ 142 (407)
T COG2730 66 LESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGY---PGG 142 (407)
T ss_pred chhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEeccc---CCC
Confidence 45558 899999999999999999995444554 223212212378999999999999999983210 00
Q ss_pred CCCCCCcccccCCCeEeecCChhhHHHHHHHHHHHHHHHhccccccccCCceEEeccccccCC
Q 003076 126 NFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGP 188 (850)
Q Consensus 126 ~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~ 188 (850)
.++-=..|.... . ......+++..+..+.|+.+.+ +.-.||++|+=||.-.
T Consensus 143 ~~~~~~s~~~~~--~---~~~~~~~~~~~~~w~~ia~~f~-------~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 143 NNGHEHSGYTSD--Y---KEENENVEATIDIWKFIANRFK-------NYDTVIGFELINEPNG 193 (407)
T ss_pred CCCcCccccccc--c---cccchhHHHHHHHHHHHHHhcc-------CCCceeeeeeecCCcc
Confidence 000012222210 0 0012233444444555555555 3458999999999864
No 38
>PLN02998 beta-glucosidase
Probab=95.97 E-value=0.0071 Score=71.28 Aligned_cols=101 Identities=16% Similarity=0.198 Sum_probs=73.9
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCccCCC-CceeeeeccchHHHHHHHHHHcCcEEEEecCceeccccCCCCCCcccc
Q 003076 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK 135 (850)
Q Consensus 57 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~-~G~fdF~g~~dl~~fl~la~~~gL~vilrpGPyicaEw~~GG~P~WL~ 135 (850)
-..|+++++.||++|+|+-++-|-|.-.+|. .|.+|-+|...-+++|+.+.|+||..++--= =| -+|.||.
T Consensus 81 Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~-----H~---dlP~~L~ 152 (497)
T PLN02998 81 YHKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH-----HF---DLPQALE 152 (497)
T ss_pred HHhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec-----CC---CCCHHHH
Confidence 3458999999999999999999999999996 6778888999999999999999998665420 13 4799998
Q ss_pred cC-CCeEeecCChhhHHHHHHHHHHHHHHHh
Q 003076 136 YV-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (850)
Q Consensus 136 ~~-p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (850)
+. -|-.=|..=..|.++++..++++..+++
T Consensus 153 ~~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk 183 (497)
T PLN02998 153 DEYGGWLSQEIVRDFTAYADTCFKEFGDRVS 183 (497)
T ss_pred HhhCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 63 4421122223455555555555555444
No 39
>PLN02814 beta-glucosidase
Probab=95.78 E-value=0.0092 Score=70.45 Aligned_cols=101 Identities=17% Similarity=0.210 Sum_probs=72.8
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCccCCC-CceeeeeccchHHHHHHHHHHcCcEEEEecCceeccccCCCCCCcccc
Q 003076 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK 135 (850)
Q Consensus 57 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~-~G~fdF~g~~dl~~fl~la~~~gL~vilrpGPyicaEw~~GG~P~WL~ 135 (850)
-..|+++++.||++|+|+-++-|-|.-.+|. +|.+|-+|...-+++|+.+.++||..++--= =| -+|.||.
T Consensus 76 Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~-----H~---dlP~~L~ 147 (504)
T PLN02814 76 YHKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY-----HY---DLPQSLE 147 (504)
T ss_pred HHhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec-----CC---CCCHHHH
Confidence 3458999999999999999999999999996 6888999999999999999999999665520 13 3799998
Q ss_pred cC-CCeEeecCChhhHHHHHHHHHHHHHHHh
Q 003076 136 YV-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (850)
Q Consensus 136 ~~-p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (850)
+. -|-.=|..=..|.++++..++++..+++
T Consensus 148 ~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 178 (504)
T PLN02814 148 DEYGGWINRKIIEDFTAFADVCFREFGEDVK 178 (504)
T ss_pred HhcCCcCChhHHHHHHHHHHHHHHHhCCcCC
Confidence 64 4421111123344444444444444443
No 40
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=95.75 E-value=0.033 Score=71.15 Aligned_cols=94 Identities=21% Similarity=0.319 Sum_probs=67.8
Q ss_pred cEEEEEEEeccCCCcccccCCCCceeeeCCcccEEEEEECCEEEEEEEcccccceeEEeecccccCCCCeEEEEEecCCc
Q 003076 471 DYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGL 550 (850)
Q Consensus 471 GYl~Y~T~i~~~~~~~~~~~g~~~~L~v~~~~D~a~VfVng~~vG~~~~~~~~~~~~~~~~i~l~~g~~~L~ILven~Gr 550 (850)
+-.|||+++.++..- .|.+..|.++++...++|||||++||...+.. ..+.|+++--++.|.|+|.|.|.+..-
T Consensus 109 ~~g~Yrr~F~lp~~~----~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~LaV~V~~~~d 182 (1021)
T PRK10340 109 PTGAYQRTFTLSDGW----QGKQTIIKFDGVETYFEVYVNGQYVGFSKGSR--LTAEFDISAMVKTGDNLLCVRVMQWAD 182 (1021)
T ss_pred CeEEEEEEEEeCccc----ccCcEEEEECccceEEEEEECCEEeccccCCC--ccEEEEcchhhCCCccEEEEEEEecCC
Confidence 567999999886432 34557899999999999999999999865432 345666555577888999998875332
Q ss_pred ccccCCCCc----cccceeccEEEccc
Q 003076 551 PNVGLHYET----WETGVRGAVVLHGL 573 (850)
Q Consensus 551 vNyG~~~~~----~~KGI~g~V~l~g~ 573 (850)
|..++. ...||..+|.|--.
T Consensus 183 ---~s~le~qd~w~~sGI~R~V~L~~~ 206 (1021)
T PRK10340 183 ---STYLEDQDMWWLAGIFRDVYLVGK 206 (1021)
T ss_pred ---CCccccCCccccccccceEEEEEe
Confidence 333332 24799999998543
No 41
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=95.69 E-value=0.014 Score=68.61 Aligned_cols=101 Identities=15% Similarity=0.115 Sum_probs=74.0
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCccCCC--CceeeeeccchHHHHHHHHHHcCcEEEEecCceeccccCCCCCCccc
Q 003076 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPS--PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWL 134 (850)
Q Consensus 57 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~--~G~fdF~g~~dl~~fl~la~~~gL~vilrpGPyicaEw~~GG~P~WL 134 (850)
-..|+++++.||++|+|+-++-|-|.-.+|. +|++|=+|...-+++|+.+.++||..++-- + .=-+|.||
T Consensus 72 Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL-------~-H~dlP~~L 143 (478)
T PRK09593 72 YHHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTI-------T-HFDCPMHL 143 (478)
T ss_pred HHhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe-------c-ccCCCHHH
Confidence 3558999999999999999999999999997 667888888899999999999999866542 1 22479999
Q ss_pred ccC-CCeEeecCChhhHHHHHHHHHHHHHHHh
Q 003076 135 KYV-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (850)
Q Consensus 135 ~~~-p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (850)
.+. -|-.=|..=..|.++++..++++..+++
T Consensus 144 ~~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk 175 (478)
T PRK09593 144 IEEYGGWRNRKMVGFYERLCRTLFTRYKGLVK 175 (478)
T ss_pred HhhcCCCCChHHHHHHHHHHHHHHHHhcCcCC
Confidence 764 4421122223455555555555555554
No 42
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=95.64 E-value=0.013 Score=68.71 Aligned_cols=96 Identities=13% Similarity=0.106 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCccCCC-CceeeeeccchHHHHHHHHHHcCcEEEEecCceeccccCCCCCCccccc
Q 003076 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (850)
Q Consensus 58 ~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~-~G~fdF~g~~dl~~fl~la~~~gL~vilrpGPyicaEw~~GG~P~WL~~ 136 (850)
..|+++++.||++|+|+-++-|.|.-.+|. .|.+|-+|...-+++|+.+.++||.-++-- -.=.+|.||.+
T Consensus 54 ~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 125 (469)
T PRK13511 54 HRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTL--------HHFDTPEALHS 125 (469)
T ss_pred hhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCcHHHHH
Confidence 458999999999999999999999999996 578888899999999999999999866542 12248999986
Q ss_pred CCCeEeecCChhhHHHHHHHHHHHHHHHh
Q 003076 137 VPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (850)
Q Consensus 137 ~p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (850)
.-|- .++...++-.+|.+.+++.+.
T Consensus 126 ~GGW----~n~~~v~~F~~YA~~~~~~fg 150 (469)
T PRK13511 126 NGDW----LNRENIDHFVRYAEFCFEEFP 150 (469)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 5332 244444444444444444444
No 43
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=95.61 E-value=0.014 Score=68.53 Aligned_cols=101 Identities=15% Similarity=0.079 Sum_probs=73.9
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCccCCC--CceeeeeccchHHHHHHHHHHcCcEEEEecCceeccccCCCCCCccc
Q 003076 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPS--PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWL 134 (850)
Q Consensus 57 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~--~G~fdF~g~~dl~~fl~la~~~gL~vilrpGPyicaEw~~GG~P~WL 134 (850)
-..|+++++.||++|+|+-++-|-|.-.+|. +|.++=+|...-+++|+.+.++||.-++-- -.=-+|.||
T Consensus 66 Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL--------~H~dlP~~L 137 (476)
T PRK09589 66 YHRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTL--------SHFEMPYHL 137 (476)
T ss_pred HHhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCCHHH
Confidence 3458999999999999999999999999997 566888888899999999999999866553 122479999
Q ss_pred ccC-CCeEeecCChhhHHHHHHHHHHHHHHHh
Q 003076 135 KYV-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (850)
Q Consensus 135 ~~~-p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (850)
... -|-.=|..=..|.++++.-++++..+++
T Consensus 138 ~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 169 (476)
T PRK09589 138 VTEYGGWRNRKLIDFFVRFAEVVFTRYKDKVK 169 (476)
T ss_pred HHhcCCcCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 764 4432122223455555555555555554
No 44
>PLN02849 beta-glucosidase
Probab=95.52 E-value=0.014 Score=68.97 Aligned_cols=101 Identities=18% Similarity=0.222 Sum_probs=73.3
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCccCCC-CceeeeeccchHHHHHHHHHHcCcEEEEecCceeccccCCCCCCcccc
Q 003076 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK 135 (850)
Q Consensus 57 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~-~G~fdF~g~~dl~~fl~la~~~gL~vilrpGPyicaEw~~GG~P~WL~ 135 (850)
-..|+++++.||++|+|+-++-+-|.-.+|. .|.+|=+|...-+++|+.+.++||.-++-- -.=-+|.||.
T Consensus 78 YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL--------~H~dlP~~L~ 149 (503)
T PLN02849 78 YHKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTL--------FHYDHPQYLE 149 (503)
T ss_pred HHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEee--------cCCCCcHHHH
Confidence 3458999999999999999999999999996 477888888899999999999999966542 1224799997
Q ss_pred cC-CCeEeecCChhhHHHHHHHHHHHHHHHh
Q 003076 136 YV-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (850)
Q Consensus 136 ~~-p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (850)
+. -|-.=|..=..|.++++..++++..+++
T Consensus 150 ~~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk 180 (503)
T PLN02849 150 DDYGGWINRRIIKDFTAYADVCFREFGNHVK 180 (503)
T ss_pred HhcCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 64 4421122223455555555555555554
No 45
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=95.45 E-value=0.018 Score=67.54 Aligned_cols=96 Identities=11% Similarity=0.074 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCccCCC-CceeeeeccchHHHHHHHHHHcCcEEEEecCceeccccCCCCCCccccc
Q 003076 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (850)
Q Consensus 58 ~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~-~G~fdF~g~~dl~~fl~la~~~gL~vilrpGPyicaEw~~GG~P~WL~~ 136 (850)
..|+++++.||++|+|+-++-+-|.-.+|. +|.+|=+|...-+++|+.+.++||..++--= .=-+|.||.+
T Consensus 53 hry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~--------H~dlP~~L~~ 124 (467)
T TIGR01233 53 HKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH--------HFDTPEALHS 124 (467)
T ss_pred hhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc--------CCCCcHHHHH
Confidence 458999999999999999999999999996 6788888888999999999999999766531 2248999986
Q ss_pred CCCeEeecCChhhHHHHHHHHHHHHHHHh
Q 003076 137 VPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (850)
Q Consensus 137 ~p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (850)
.-|- .++...++-.+|.+.+++.+.
T Consensus 125 ~GGW----~n~~~v~~F~~YA~~~f~~fg 149 (467)
T TIGR01233 125 NGDF----LNRENIEHFIDYAAFCFEEFP 149 (467)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 5442 244444555555555555554
No 46
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=95.28 E-value=0.066 Score=68.50 Aligned_cols=93 Identities=20% Similarity=0.260 Sum_probs=65.6
Q ss_pred cEEEEEEEeccCCCcccccCCC-CceeeeCCcccEEEEEECCEEEEEEEcccccceeEEeecccccCCCCeEEEEEecCC
Q 003076 471 DYLWYMTSVEISSSESFLRGGQ-KPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVG 549 (850)
Q Consensus 471 GYl~Y~T~i~~~~~~~~~~~g~-~~~L~v~~~~D~a~VfVng~~vG~~~~~~~~~~~~~~~~i~l~~g~~~L~ILven~G 549 (850)
+-.|||+++.++..- .+. +..|.++++.-.++|||||+++|...+. ...+.|+++-.++.|.|+|.|.|-..-
T Consensus 120 ~~gwYrr~F~vp~~w----~~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~--~~pfefDIT~~l~~G~N~L~V~V~~~s 193 (1027)
T PRK09525 120 PTGCYSLTFTVDESW----LQSGQTRIIFDGVNSAFHLWCNGRWVGYSQDS--RLPAEFDLSPFLRAGENRLAVMVLRWS 193 (1027)
T ss_pred CeEEEEEEEEeChhh----cCCCeEEEEECeeccEEEEEECCEEEEeecCC--CceEEEEChhhhcCCccEEEEEEEecC
Confidence 578999999876431 122 4689999999999999999999986543 234566666567888999999884321
Q ss_pred cccccCCCCc----cccceeccEEEcc
Q 003076 550 LPNVGLHYET----WETGVRGAVVLHG 572 (850)
Q Consensus 550 rvNyG~~~~~----~~KGI~g~V~l~g 572 (850)
-|..+++ ...||..+|.|--
T Consensus 194 ---dgs~~e~qd~w~~sGI~R~V~L~~ 217 (1027)
T PRK09525 194 ---DGSYLEDQDMWRMSGIFRDVSLLH 217 (1027)
T ss_pred ---CCCccccCCceeeccccceEEEEE
Confidence 2233332 2469999999843
No 47
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.05 E-value=0.1 Score=56.74 Aligned_cols=110 Identities=23% Similarity=0.289 Sum_probs=74.7
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHH---HcCcEEEEecCceeccccCCCCCCccccc
Q 003076 60 WEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQ---RVGLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (850)
Q Consensus 60 W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~---~~gL~vilrpGPyicaEw~~GG~P~WL~~ 136 (850)
=+|.|+-+|+.|+|-|+.-| ||..--..|.=-=.|+.|+.+.|++|+ ..||+|+|.+= +-.|-.+
T Consensus 65 ~qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH-----------YSDfwaD 132 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH-----------YSDFWAD 132 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc-----------chhhccC
Confidence 36899999999999999865 666544444433346789999998875 47999999862 1122211
Q ss_pred -----CCCeEeecCChhhHHHHHHHHHHHHHHHhccccccccCCceEEeccccccC
Q 003076 137 -----VPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYG 187 (850)
Q Consensus 137 -----~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg 187 (850)
+|..-.--+-+.-.+++-.|.+..+..+++. |=-+=||||-||-.
T Consensus 133 PakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~e------Gi~pdmVQVGNEtn 182 (403)
T COG3867 133 PAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKE------GILPDMVQVGNETN 182 (403)
T ss_pred hhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHc------CCCccceEeccccC
Confidence 1221111233455677888999999999844 44667999999974
No 48
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=94.97 E-value=0.13 Score=50.25 Aligned_cols=98 Identities=12% Similarity=0.130 Sum_probs=65.4
Q ss_pred HHHHHHHHCCCCEEEEccc-------C--CccCCCCceeeeeccchHHHHHHHHHHcCcEEEEecCceeccccCCCCCCc
Q 003076 62 DLIRKAKDGGLDVIDTYVF-------W--NGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPV 132 (850)
Q Consensus 62 ~~l~k~ka~G~NtV~~yv~-------W--n~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vilrpGPyicaEw~~GG~P~ 132 (850)
+-++.+|++|+|+|.++.= | .+|.+.|+- ++.-|.+++++|++.||.|++|...- --|+..--.|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L----~~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL----KRDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC----CcCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 3467899999999998432 2 345555554 12257999999999999999998655 34444556799
Q ss_pred ccccCCCeE-------------eecCChhhHHHHHHHHHHHHHHH
Q 003076 133 WLKYVPGIS-------------FRTDNGPFKVAMQGFTQKIVQMM 164 (850)
Q Consensus 133 WL~~~p~~~-------------~R~~d~~y~~~~~~~~~~l~~~l 164 (850)
|+..+++-+ .-+.|..|++.+.+-+++|+...
T Consensus 79 W~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 79 WFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred eeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 998644321 11235578877766666665544
No 49
>PRK09936 hypothetical protein; Provisional
Probab=94.14 E-value=0.21 Score=54.61 Aligned_cols=57 Identities=23% Similarity=0.406 Sum_probs=46.8
Q ss_pred CCCCHhHHHHHHHHHHHCCCCEEEEcccCCcc-CCCCceeeeecc-chHHHHHHHHHHcCcEEEEe
Q 003076 53 PRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGH-EPSPGHYNFEGS-YDLVRFIKTVQRVGLYAHLR 116 (850)
Q Consensus 53 ~r~~~~~W~~~l~k~ka~G~NtV~~yv~Wn~h-Ep~~G~fdF~g~-~dl~~fl~la~~~gL~vilr 116 (850)
.+++++.|+.+++.+|+.|++|+= |=|.-. |. ||.+. -.|.+.++.|++.||.|++-
T Consensus 33 ~~~~~~qWq~~~~~~~~~G~~tLi--vQWt~yG~~-----~fg~~~g~La~~l~~A~~~Gl~v~vG 91 (296)
T PRK09936 33 SQVTDTQWQGLWSQLRLQGFDTLV--VQWTRYGDA-----DFGGQRGWLAKRLAAAQQAGLKLVVG 91 (296)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEE--EEeeeccCC-----CcccchHHHHHHHHHHHHcCCEEEEc
Confidence 467999999999999999999974 445443 22 88765 48999999999999998875
No 50
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=93.13 E-value=0.46 Score=52.91 Aligned_cols=117 Identities=17% Similarity=0.250 Sum_probs=73.1
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCC-------ccCCC-------Cce-eeeeccchHHHHHHHHHHcCcEEEEecCce
Q 003076 56 TPEMWEDLIRKAKDGGLDVIDTYVFWN-------GHEPS-------PGH-YNFEGSYDLVRFIKTVQRVGLYAHLRIGPY 120 (850)
Q Consensus 56 ~~~~W~~~l~k~ka~G~NtV~~yv~Wn-------~hEp~-------~G~-fdF~g~~dl~~fl~la~~~gL~vilrpGPy 120 (850)
.++.-++.|++++++|||+|-.-|.+. -.+|. +|. -.|+ -|+.+|+.|++.||.|..++ .+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~D---pL~~~I~eaHkrGlevHAW~-~~ 92 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFD---PLEFMIEEAHKRGLEVHAWF-RV 92 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCcc---HHHHHHHHHHHcCCEEEEEE-Ee
Confidence 677889999999999999997544431 12221 111 0133 79999999999999999876 11
Q ss_pred eccccCC----CCCCcccc-cCCCeEeec----C-----ChhhHHHHHHHHHHHHHHHhccccccccCCceEEecccc
Q 003076 121 VCAEWNF----GGFPVWLK-YVPGISFRT----D-----NGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIEN 184 (850)
Q Consensus 121 icaEw~~----GG~P~WL~-~~p~~~~R~----~-----d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiEN 184 (850)
-...... -..|.|+. +.++..... . ||. ..+|+.|+..++..|.. .+ +|=++|++-
T Consensus 93 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~-~PeVr~~i~~~v~Eiv~-~Y------dvDGIhlDd 162 (311)
T PF02638_consen 93 GFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPG-HPEVRDYIIDIVKEIVK-NY------DVDGIHLDD 162 (311)
T ss_pred ecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCC-CHHHHHHHHHHHHHHHh-cC------CCCeEEecc
Confidence 1110111 12588876 456643332 1 333 47788888877766542 22 477888874
No 51
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=93.08 E-value=0.11 Score=60.19 Aligned_cols=97 Identities=19% Similarity=0.305 Sum_probs=70.8
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCccCCCCc--eeeeeccchHHHHHHHHHHcCcEEEEecCceeccccCCCCCCccc
Q 003076 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPG--HYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWL 134 (850)
Q Consensus 57 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G--~fdF~g~~dl~~fl~la~~~gL~vilrpGPyicaEw~~GG~P~WL 134 (850)
-..++++++.||+||+|+.++-|-|...-|..+ +.+=.|...-+++|+.|.++|+.-++--= =| -+|.||
T Consensus 58 YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~-----Hf---d~P~~L 129 (460)
T COG2723 58 YHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY-----HF---DLPLWL 129 (460)
T ss_pred hhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-----cc---CCcHHH
Confidence 345889999999999999999999999999655 48888888999999999999999665531 12 369999
Q ss_pred ccC-CCeEeecCChhhHHHHHHHHHHHHHHHh
Q 003076 135 KYV-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (850)
Q Consensus 135 ~~~-p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (850)
.+. -|=. |..-.++-.+|.+.+++++.
T Consensus 130 ~~~ygGW~----nR~~i~~F~~ya~~vf~~f~ 157 (460)
T COG2723 130 QKPYGGWE----NRETVDAFARYAATVFERFG 157 (460)
T ss_pred hhccCCcc----CHHHHHHHHHHHHHHHHHhc
Confidence 875 3432 22233344444455554444
No 52
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=92.21 E-value=19 Score=41.53 Aligned_cols=246 Identities=13% Similarity=0.129 Sum_probs=125.2
Q ss_pred ecCCCCCHhHHHHHHHHHHHCCCCEEEE-------cccCCccCCCCceeeee-ccchHHHHHHHHHHcCcEEEEecCcee
Q 003076 50 IHYPRSTPEMWEDLIRKAKDGGLDVIDT-------YVFWNGHEPSPGHYNFE-GSYDLVRFIKTVQRVGLYAHLRIGPYV 121 (850)
Q Consensus 50 ~Hy~r~~~~~W~~~l~k~ka~G~NtV~~-------yv~Wn~hEp~~G~fdF~-g~~dl~~fl~la~~~gL~vilrpGPyi 121 (850)
+.+.+..++.|. +.+|++|+.-|-. +-.|.-....-..-+-. ++--|.+|.+.|+++||++-+ |.
T Consensus 76 F~p~~fD~~~Wa---~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~----Y~ 148 (384)
T smart00812 76 FTAEKFDPEEWA---DLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGL----YH 148 (384)
T ss_pred CCchhCCHHHHH---HHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEE----Ec
Confidence 444556777775 4678888886642 22354432211111111 223467888999999997665 44
Q ss_pred cc-ccCCCCCCcccccCCCeEeecCChhhHHHHHHHHHHHHHHHhccccccccCCceEEeccccccCCCccccCcchHHH
Q 003076 122 CA-EWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAY 200 (850)
Q Consensus 122 ca-Ew~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y 200 (850)
-. +|.. |.|....+.-..+.+.+.|.++++.|+.+|.+.|.++ ||-|+|- +-..+.. ...--
T Consensus 149 S~~DW~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Y-------gpd~lWf-D~~~~~~------~~~~~ 211 (384)
T smart00812 149 SLFDWFN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRY-------KPDLLWF-DGGWEAP------DDYWR 211 (384)
T ss_pred CHHHhCC---CccccccccccccccchhHHHHHHHHHHHHHHHHhcC-------CCceEEE-eCCCCCc------cchhc
Confidence 43 6754 5443221111123456788888888888888888732 2434442 2111110 01111
Q ss_pred HHHHHHHHhcCCCCc--ceeeeCCCCCCCccccCCCCcccccCCCCCC----CCCeEe-eeeccccccccCC-CCCCCCH
Q 003076 201 VNWAAKMAVGLDTGV--PWVMCKEDDAPDPVINSCNGFYCDAFSPNKP----YKPTLW-TEAWSGWFTEFGG-AVHRRPV 272 (850)
Q Consensus 201 ~~~l~~~~~~~g~~v--p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p----~~P~~~-~E~~~Gwf~~wG~-~~~~~~~ 272 (850)
++.|.+++++...+. .++ ++... ..... .|..........| ..|.-. +=.-.+|+=+-++ ....+++
T Consensus 212 ~~~l~~~~~~~qP~~~~vvv-n~R~~---~~~~~-~g~~~~~~e~~~p~~~~~~pwE~~~ti~~sWgy~~~~~~~~~ks~ 286 (384)
T smart00812 212 SKEFLAWLYNLSPVKDTVVV-NDRWG---GTGCK-HGGFYTDEERGAPGKLLPHPWETCTTIGKSWGYRRNESDSDYKSP 286 (384)
T ss_pred HHHHHHHHHHhCCCCceEEE-Ecccc---ccCCC-CCCcccCcccCCCCCCCCCCcccccccCCCCCcCCCCCcccCCCH
Confidence 344666666554432 122 22110 00000 0100000011111 111110 0011244433332 2235689
Q ss_pred HHHHHHHHHHHHhCCceeeeeeeecCCCCCCCCCCCcccccCcCCCCCCCCCCCCchhHHHHHHHHHHHHhhhcccc
Q 003076 273 QDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAIKLCEYALV 349 (850)
Q Consensus 273 ~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~TSYDydApl~E~G~~~t~ky~~lr~l~~~~~~~~~~l~ 349 (850)
+++...+....++|++++ .| -+-+.+|.+....-..|+++...++..++.+-
T Consensus 287 ~~li~~l~~~Vsk~GnlL-------------LN------------VgP~~dG~ip~~~~~~L~~iG~Wl~~ngeaIy 338 (384)
T smart00812 287 KELIRDLVDIVSKGGNLL-------------LN------------VGPKADGTIPEEEEERLLEIGKWLKVNGEAIY 338 (384)
T ss_pred HHHHHHHhhhcCCCceEE-------------Ec------------cCCCCCCCCCHHHHHHHHHHHHHHHhCCceee
Confidence 999999999999998842 22 22456888866677889999999887665443
No 53
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=91.57 E-value=2.1 Score=50.83 Aligned_cols=276 Identities=19% Similarity=0.302 Sum_probs=131.7
Q ss_pred eEeEEEEEEecC------CCCCHhHHHHHHHHH---HHCCCCEEEEccc--------CCccCCCCc-----eeeeec--c
Q 003076 41 QRRILISGSIHY------PRSTPEMWEDLIRKA---KDGGLDVIDTYVF--------WNGHEPSPG-----HYNFEG--S 96 (850)
Q Consensus 41 ~p~~~~sG~~Hy------~r~~~~~W~~~l~k~---ka~G~NtV~~yv~--------Wn~hEp~~G-----~fdF~g--~ 96 (850)
+++.=++|++=- .+.+++.=++.|+.+ +-+|++.+++.+- +.+-+ .|+ .|+... .
T Consensus 74 Q~i~GFGga~Tdasa~~l~~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d-~~~D~~l~~Fs~~~~d~ 152 (496)
T PF02055_consen 74 QTIDGFGGAFTDASAYNLQKLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDD-VPGDFNLSNFSIAREDK 152 (496)
T ss_dssp EE--EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST--STTHTTTTT---HHHHH
T ss_pred eEEEEEeeeHHHHHHHHHHhCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccC-CCCCCccccCCccccch
Confidence 445557777632 234443333333332 4589999998876 22222 223 222221 1
Q ss_pred chHHHHHHHHHHc--CcEEEEecCceeccccCCCCCCcccccCCCe----Eeec-CChhhHHHHHHHHHHHHHHHhcccc
Q 003076 97 YDLVRFIKTVQRV--GLYAHLRIGPYVCAEWNFGGFPVWLKYVPGI----SFRT-DNGPFKVAMQGFTQKIVQMMKNEKL 169 (850)
Q Consensus 97 ~dl~~fl~la~~~--gL~vilrpGPyicaEw~~GG~P~WL~~~p~~----~~R~-~d~~y~~~~~~~~~~l~~~l~~~~~ 169 (850)
..+..+|+.|++. +|+++.-| |. .|+||+....+ .++. ..+.|.++.-.||.+-++.++++
T Consensus 153 ~~~ip~ik~a~~~~~~lki~aSp-------WS---pP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~-- 220 (496)
T PF02055_consen 153 KYKIPLIKEALAINPNLKIFASP-------WS---PPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKE-- 220 (496)
T ss_dssp TTHHHHHHHHHHHHTT-EEEEEE-------S------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCT--
T ss_pred hhHHHHHHHHHHhCCCcEEEEec-------CC---CCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHC--
Confidence 2335688877764 57888776 63 69999864322 3442 34578888888888888888744
Q ss_pred ccccCCceEEeccccccCCC-------cc-ccC-cchHHHHH-HHHHHHhcCCC--CcceeeeCCC--CCCC---ccccC
Q 003076 170 FASQGGPIILSQIENEYGPE-------SK-SLG-AAGHAYVN-WAAKMAVGLDT--GVPWVMCKED--DAPD---PVINS 232 (850)
Q Consensus 170 ~~~~gGpII~~QiENEyg~~-------~~-~~~-~~~~~y~~-~l~~~~~~~g~--~vp~~~~~~~--~~~~---~~~~~ 232 (850)
|=+|-++-+.||.... .+ .+. +..++|++ .|.-.+++.++ ++-++..+.. ..|+ .++.-
T Consensus 221 ----GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d 296 (496)
T PF02055_consen 221 ----GIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILND 296 (496)
T ss_dssp ----T--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTS
T ss_pred ----CCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcC
Confidence 4499999999998641 11 111 23467775 48888988877 7767666531 1221 12210
Q ss_pred ------CC--Cccc--c-cC-------CCCCCCCCeEeeeeccccccccCCCCCC---CCHHHHHHHHHHHHHhCCceee
Q 003076 233 ------CN--GFYC--D-AF-------SPNKPYKPTLWTEAWSGWFTEFGGAVHR---RPVQDLAFAVARFIQKGGSFFN 291 (850)
Q Consensus 233 ------~~--g~~~--~-~~-------~~~~p~~P~~~~E~~~Gwf~~wG~~~~~---~~~~~~~~~~~~~l~~g~s~~n 291 (850)
.. +++| . .. ....|++.++.||-..|.. .|+..... ..++..+..+..-+..+++ +
T Consensus 297 ~~A~~yv~GiA~HwY~g~~~~~~l~~~h~~~P~k~l~~TE~~~g~~-~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~--g 373 (496)
T PF02055_consen 297 PEAAKYVDGIAFHWYGGDPSPQALDQVHNKFPDKFLLFTEACCGSW-NWDTSVDLGSWDRAERYAHDIIGDLNNWVS--G 373 (496)
T ss_dssp HHHHTTEEEEEEEETTCS-HCHHHHHHHHHSTTSEEEEEEEESS-S-TTS-SS-TTHHHHHHHHHHHHHHHHHTTEE--E
T ss_pred hhhHhheeEEEEECCCCCchhhHHHHHHHHCCCcEEEeeccccCCC-CcccccccccHHHHHHHHHHHHHHHHhhce--e
Confidence 11 2333 1 11 1346889999999865431 12211111 1223344444444566654 3
Q ss_pred eeee------ecCCCCCCCC-CCCcccccCcCCCCCCCCCCCCchhHHHHHHHHHHHHh
Q 003076 292 YYMY------HGGTNFGRTA-GGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAIKL 343 (850)
Q Consensus 292 ~YM~------hGGTNfG~~~-G~~~~~TSYDydApl~E~G~~~t~ky~~lr~l~~~~~~ 343 (850)
+-++ .||-|++... .++..+.. +. +| -..+|.|+.|..+.+|++.
T Consensus 374 w~~WNl~LD~~GGP~~~~n~~d~~iivd~-~~----~~--~~~~p~yY~~gHfSKFV~P 425 (496)
T PF02055_consen 374 WIDWNLALDENGGPNWVGNFCDAPIIVDS-DT----GE--FYKQPEYYAMGHFSKFVRP 425 (496)
T ss_dssp EEEEESEBETTS---TT---B--SEEEEG-GG----TE--EEE-HHHHHHHHHHTTS-T
T ss_pred eeeeeeecCCCCCCcccCCCCCceeEEEc-CC----Ce--EEEcHHHHHHHHHhcccCC
Confidence 3333 4888875421 12222111 11 11 1236899999888777653
No 54
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=91.27 E-value=2.2 Score=51.99 Aligned_cols=56 Identities=23% Similarity=0.306 Sum_probs=40.5
Q ss_pred HHHH-HHHHHCCCCEEEE-cccCCccCCCCcee----------eeeccchHHHHHHHHHHcCcEEEEec
Q 003076 61 EDLI-RKAKDGGLDVIDT-YVFWNGHEPSPGHY----------NFEGSYDLVRFIKTVQRVGLYAHLRI 117 (850)
Q Consensus 61 ~~~l-~k~ka~G~NtV~~-yv~Wn~hEp~~G~f----------dF~g~~dl~~fl~la~~~gL~vilrp 117 (850)
.++| .-+|++|+|+|.. +|+..-....=| | .|.+..||.+|++.|+++||.|||-.
T Consensus 159 ~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wG-Y~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~ 226 (613)
T TIGR01515 159 ADQLIPYVKELGFTHIELLPVAEHPFDGSWG-YQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDW 226 (613)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCCC-CCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3454 7789999999998 787542111001 2 24455799999999999999999984
No 55
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.06 E-value=1.1 Score=51.72 Aligned_cols=122 Identities=20% Similarity=0.293 Sum_probs=82.6
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcc-------------cCCccCCCCceee-eeccchHHHHHHHHHHcCcEEEEecCcee
Q 003076 56 TPEMWEDLIRKAKDGGLDVIDTYV-------------FWNGHEPSPGHYN-FEGSYDLVRFIKTVQRVGLYAHLRIGPYV 121 (850)
Q Consensus 56 ~~~~W~~~l~k~ka~G~NtV~~yv-------------~Wn~hEp~~G~fd-F~g~~dl~~fl~la~~~gL~vilrpGPyi 121 (850)
.+.+-.+.|.+++++|+|||-.-| +|..-- ||.+- =.|..-|...|++|++.||.|+.++=||.
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~ 139 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYR 139 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhcc
Confidence 788889999999999999997322 233322 34321 12334688899999999999999998887
Q ss_pred ccccCCCC---CCcccccC-CCeE-eecCC-------hhhHHHHHHHHHHHHH-HHhccccccccCCceEEeccccccC
Q 003076 122 CAEWNFGG---FPVWLKYV-PGIS-FRTDN-------GPFKVAMQGFTQKIVQ-MMKNEKLFASQGGPIILSQIENEYG 187 (850)
Q Consensus 122 caEw~~GG---~P~WL~~~-p~~~-~R~~d-------~~y~~~~~~~~~~l~~-~l~~~~~~~~~gGpII~~QiENEyg 187 (850)
.|--..-. -|.|+... |+.. .|... .+...+|..|+..++. +++ .+ .|-++|++-=++
T Consensus 140 ~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~--~Y------dvDGIQfDd~fy 210 (418)
T COG1649 140 MAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVR--NY------DVDGIQFDDYFY 210 (418)
T ss_pred cCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHh--CC------CCCceecceeec
Confidence 66433322 37888764 5543 33332 2456788888888774 555 33 577889887665
No 56
>smart00642 Aamy Alpha-amylase domain.
Probab=91.06 E-value=0.57 Score=47.45 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=46.6
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCcc-------CCCCcee-----eeeccchHHHHHHHHHHcCcEEEEecCceeccc
Q 003076 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGH-------EPSPGHY-----NFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAE 124 (850)
Q Consensus 57 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~h-------Ep~~G~f-----dF~g~~dl~~fl~la~~~gL~vilrpGPyicaE 124 (850)
-+-+.+.|..+|++|+|+|.+-=++... --.+..| .|....+|+++++.|+++||+||+-.=|-=++.
T Consensus 18 ~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 18 LQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 4456777888999999999974333222 1122222 345567999999999999999999864443333
No 57
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=89.37 E-value=0.33 Score=55.96 Aligned_cols=157 Identities=15% Similarity=0.183 Sum_probs=104.5
Q ss_pred cEEECCeEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcc-CC---CCceeee-eccchHHHHHHHHHHc
Q 003076 35 AILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGH-EP---SPGHYNF-EGSYDLVRFIKTVQRV 109 (850)
Q Consensus 35 ~~~idG~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~NtV~~yv~Wn~h-Ep---~~G~fdF-~g~~dl~~fl~la~~~ 109 (850)
.|.++++++..++..--+.++..++-+++|+-|+.+|+++++.. -+- |+ ++|.-+- ++..-++.|++.|.++
T Consensus 3 ~F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~f---iLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l 79 (587)
T COG3934 3 VFALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLF---ILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYL 79 (587)
T ss_pred eEEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEE---EecCcchhhhhceecccccHHHHHHHhhhcccC
Confidence 37778887777776666677776677788999999999999986 344 55 3443322 2345789999999999
Q ss_pred CcEEEEecCceeccccCCCCCC---cccc-cCCCeEeecCChhhHHHHHHHHHHHHHHHhccccccccCCceEEeccccc
Q 003076 110 GLYAHLRIGPYVCAEWNFGGFP---VWLK-YVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENE 185 (850)
Q Consensus 110 gL~vilrpGPyicaEw~~GG~P---~WL~-~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENE 185 (850)
+|+|+++. |.+==.+||.= .|-- +.|+-.+ -||.++..-++|...+++-.+ ....|.+|-+-||
T Consensus 80 ~lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~i--yD~k~~~~~kkyvedlVk~yk-------~~ptI~gw~l~Ne 147 (587)
T COG3934 80 DLKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNVI--YDPKFRGPGKKYVEDLVKPYK-------LDPTIAGWALRNE 147 (587)
T ss_pred cceEEEEE---eecccccCcceeEeecCCCCCccccc--cchhhcccHHHHHHHHhhhhc-------cChHHHHHHhcCC
Confidence 99998873 44433455542 2221 1233111 256666666777777776554 3347888999999
Q ss_pred cCCCccccCcchHHHHHHHHHHHh
Q 003076 186 YGPESKSLGAAGHAYVNWAAKMAV 209 (850)
Q Consensus 186 yg~~~~~~~~~~~~y~~~l~~~~~ 209 (850)
.... -...+..+++|++.|+.
T Consensus 148 --~lv~-~p~s~N~f~~w~~emy~ 168 (587)
T COG3934 148 --PLVE-APISVNNFWDWSGEMYA 168 (587)
T ss_pred --cccc-ccCChhHHHHHHHHHHH
Confidence 3211 12367889999999974
No 58
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=88.50 E-value=5.3 Score=43.32 Aligned_cols=131 Identities=13% Similarity=0.177 Sum_probs=76.5
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEE-EecCceeccccCCCCCCcccc
Q 003076 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH-LRIGPYVCAEWNFGGFPVWLK 135 (850)
Q Consensus 57 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vi-lrpGPyicaEw~~GG~P~WL~ 135 (850)
..-|++.|+.++++|++.|+.-+ +.. ...+...+++ ..++..+.++++++||.|. +.+++ .+.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~-~~~-~~~~~~~~~~-~~~~~~~~~~l~~~gl~i~~~~~~~-------~~~~~---- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSV-DET-DDRLSRLDWS-REQRLALVNAIIETGVRIPSMCLSA-------HRRFP---- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec-CCc-cchhhccCCC-HHHHHHHHHHHHHcCCCceeeecCC-------CccCc----
Confidence 35599999999999999999943 222 2223444554 2468899999999999865 44331 11111
Q ss_pred cCCCeEeecCChhhHHHHHHHHHHHHHHHhccccccccCCceEEeccccccCCCccccCc---chHHHHHHHHHHHhcCC
Q 003076 136 YVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGA---AGHAYVNWAAKMAVGLD 212 (850)
Q Consensus 136 ~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~---~~~~y~~~l~~~~~~~g 212 (850)
+-..|+.-+++....+++.++..+ .+ |.++|.+-- .++.. ...... .-.+.++.|.+.+++.|
T Consensus 81 ------l~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~~-~~~~~-~~~~~~~~~~~~~~l~~l~~~A~~~G 146 (279)
T TIGR00542 81 ------LGSKDKAVRQQGLEIMEKAIQLAR--DL----GIRTIQLAG-YDVYY-EEHDEETRRRFREGLKEAVELAARAQ 146 (279)
T ss_pred ------CCCcCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEecC-ccccc-CcCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 122345556666777777777777 33 556665421 11100 000000 12245566667777777
Q ss_pred CCc
Q 003076 213 TGV 215 (850)
Q Consensus 213 ~~v 215 (850)
+.+
T Consensus 147 v~l 149 (279)
T TIGR00542 147 VTL 149 (279)
T ss_pred CEE
Confidence 754
No 59
>PRK14706 glycogen branching enzyme; Provisional
Probab=88.30 E-value=6.1 Score=48.46 Aligned_cols=54 Identities=11% Similarity=0.115 Sum_probs=35.9
Q ss_pred HHHHHHCCCCEEEE-ccc-------CCccCC--CCceeeeeccchHHHHHHHHHHcCcEEEEec
Q 003076 64 IRKAKDGGLDVIDT-YVF-------WNGHEP--SPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (850)
Q Consensus 64 l~k~ka~G~NtV~~-yv~-------Wn~hEp--~~G~fdF~g~~dl~~fl~la~~~gL~vilrp 117 (850)
+.-+|++|+|+|+. +|. |...-. ..=.=.|....||.+|++.|+++||.|||-.
T Consensus 174 ~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 174 GEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 36789999999995 442 322100 0000013345799999999999999999874
No 60
>PRK05402 glycogen branching enzyme; Provisional
Probab=87.63 E-value=5.4 Score=49.66 Aligned_cols=54 Identities=19% Similarity=0.268 Sum_probs=37.4
Q ss_pred HHHHHHCCCCEEEE-cccCC----ccCCCCcee-----eeeccchHHHHHHHHHHcCcEEEEec
Q 003076 64 IRKAKDGGLDVIDT-YVFWN----GHEPSPGHY-----NFEGSYDLVRFIKTVQRVGLYAHLRI 117 (850)
Q Consensus 64 l~k~ka~G~NtV~~-yv~Wn----~hEp~~G~f-----dF~g~~dl~~fl~la~~~gL~vilrp 117 (850)
|.-+|++|+|+|.. +|+=. .|-..+..| .|.+..||.+|++.|+++||.|||-.
T Consensus 272 ~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 272 IPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 36779999999996 66411 111111111 14455799999999999999999984
No 61
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=87.02 E-value=5.9 Score=46.87 Aligned_cols=150 Identities=17% Similarity=0.244 Sum_probs=93.3
Q ss_pred cccEEECCeEeEEEEEEecC-----CCCCHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHH
Q 003076 33 RKAILINGQRRILISGSIHY-----PRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQ 107 (850)
Q Consensus 33 ~~~~~idG~p~~~~sG~~Hy-----~r~~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~ 107 (850)
+..|.|+|.|.++.++.--+ .|..-+.-+-.|+-++++|+|++++ |. -| ...-+.|-++|.
T Consensus 327 nfyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRV---WG-----GG------vYEsd~FY~lad 392 (867)
T KOG2230|consen 327 NFYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRV---WG-----GG------VYESDYFYQLAD 392 (867)
T ss_pred eeEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEE---ec-----Cc------cccchhHHHHhh
Confidence 45789999999998887554 2334555666799999999999998 22 12 234589999999
Q ss_pred HcCcEEEEecCceeccccCCCCCCcccccCCCeEeecCChhhHHHHHHHHHHHHHHHhccccccccCCceEEecc--ccc
Q 003076 108 RVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQI--ENE 185 (850)
Q Consensus 108 ~~gL~vilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi--ENE 185 (850)
+.||.|--.. =+.||- =-.|..|+.-|+.=++.=+.+|+.|| .||.+-= |||
T Consensus 393 ~lGilVWQD~-MFACAl------------------YPt~~eFl~sv~eEV~yn~~Rls~Hp-------SviIfsgNNENE 446 (867)
T KOG2230|consen 393 SLGILVWQDM-MFACAL------------------YPTNDEFLSSVREEVRYNAMRLSHHP-------SVIIFSGNNENE 446 (867)
T ss_pred hccceehhhh-HHHhhc------------------ccCcHHHHHHHHHHHHHHHHhhccCC-------eEEEEeCCCccH
Confidence 9999764221 122322 22367788888887777777787554 5666654 444
Q ss_pred c-------CCCccccCcchHHHH----HHHHHHHhcCCCCcceeeeCC
Q 003076 186 Y-------GPESKSLGAAGHAYV----NWAAKMAVGLDTGVPWVMCKE 222 (850)
Q Consensus 186 y-------g~~~~~~~~~~~~y~----~~l~~~~~~~g~~vp~~~~~~ 222 (850)
= |.....-...-++|. +-++++...-.-..|+++...
T Consensus 447 aAl~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SSP 494 (867)
T KOG2230|consen 447 AALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSSP 494 (867)
T ss_pred HHHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecCC
Confidence 2 211000001233444 334555544455678888654
No 62
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=86.69 E-value=0.93 Score=53.42 Aligned_cols=61 Identities=8% Similarity=0.211 Sum_probs=43.8
Q ss_pred HhHHH---HHHHHHHHCCCCEEEE-cccCCc-----cCCCCce-e-------------eeeccchHHHHHHHHHHcCcEE
Q 003076 57 PEMWE---DLIRKAKDGGLDVIDT-YVFWNG-----HEPSPGH-Y-------------NFEGSYDLVRFIKTVQRVGLYA 113 (850)
Q Consensus 57 ~~~W~---~~l~k~ka~G~NtV~~-yv~Wn~-----hEp~~G~-f-------------dF~g~~dl~~fl~la~~~gL~v 113 (850)
.+.|+ +.|.-+|++|+++|-+ +++-+. |--.+-- | .|....||+++++.|+++||+|
T Consensus 18 ~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~v 97 (479)
T PRK09441 18 GKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKV 97 (479)
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEE
Confidence 35575 5677789999999997 566443 3332222 2 2334579999999999999999
Q ss_pred EEec
Q 003076 114 HLRI 117 (850)
Q Consensus 114 ilrp 117 (850)
||-.
T Consensus 98 i~D~ 101 (479)
T PRK09441 98 YADV 101 (479)
T ss_pred EEEE
Confidence 9985
No 63
>PRK12568 glycogen branching enzyme; Provisional
Probab=86.16 E-value=13 Score=46.16 Aligned_cols=56 Identities=20% Similarity=0.334 Sum_probs=39.6
Q ss_pred HHHHHHHHCCCCEEEE-ccc-------CCccCCCCcee----eeeccchHHHHHHHHHHcCcEEEEecCc
Q 003076 62 DLIRKAKDGGLDVIDT-YVF-------WNGHEPSPGHY----NFEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (850)
Q Consensus 62 ~~l~k~ka~G~NtV~~-yv~-------Wn~hEp~~G~f----dF~g~~dl~~fl~la~~~gL~vilrpGP 119 (850)
+.|.-+|++|+|+|+. +|+ |-+.- -|-| .|....++.+|++.|+++||.|||-.=|
T Consensus 274 ~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~--~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 274 QLIPYVQQLGFTHIELLPITEHPFGGSWGYQP--LGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHHcCCCEEEECccccCCCCCCCCCCC--CcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3468899999999996 553 32210 0111 2445579999999999999999998544
No 64
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=85.35 E-value=9.8 Score=43.03 Aligned_cols=140 Identities=15% Similarity=0.223 Sum_probs=91.3
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHH---HcCcEEEEecCceeccccCCCCCC
Q 003076 55 STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQ---RVGLYAHLRIGPYVCAEWNFGGFP 131 (850)
Q Consensus 55 ~~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~---~~gL~vilrpGPyicaEw~~GG~P 131 (850)
..|+..+.-++.+|+.||+.--.|-.| |.|.+-|++-++..- +-+|..-|. |.+-.|..
T Consensus 55 ~~p~v~~~Q~~lA~~~GI~gF~~~~Yw-----------f~gk~lLe~p~~~~l~~~~~d~pFcl~---WAN~~w~~---- 116 (345)
T PF14307_consen 55 RDPEVMEKQAELAKEYGIDGFCFYHYW-----------FNGKRLLEKPLENLLASKEPDFPFCLC---WANENWTR---- 116 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEeee-----------cCCchHHHHHHHHHHhcCCCCCcEEEE---ECCChhhh----
Confidence 367888999999999999999999888 456667777766553 445665565 23333311
Q ss_pred cccccCCCeEeecCChhhHHHHHHHHHHHHHHHhccccccccCCceEEeccccccCCCccccCcchHHHHHHHHHHHhcC
Q 003076 132 VWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKMAVGL 211 (850)
Q Consensus 132 ~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~ 211 (850)
.|-....++.+-...+. .+..++.++.|++.+++..++--+|-||+++=--.+. ..-+++++.+++.++++
T Consensus 117 ~w~g~~~~~l~~q~y~~-~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~~--------pd~~~~~~~wr~~a~~~ 187 (345)
T PF14307_consen 117 RWDGRNNEILIEQKYSG-EDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGDI--------PDIKEMIERWREEAKEA 187 (345)
T ss_pred ccCCCCccccccccCCc-hhHHHHHHHHHHHHhCCCCceeECCEEEEEEECcccc--------cCHHHHHHHHHHHHHHc
Confidence 23222233322111110 1234677888899999877666788899987433222 25678999999999999
Q ss_pred CCCcceeeeC
Q 003076 212 DTGVPWVMCK 221 (850)
Q Consensus 212 g~~vp~~~~~ 221 (850)
|+.-+.+...
T Consensus 188 G~~giyii~~ 197 (345)
T PF14307_consen 188 GLPGIYIIAV 197 (345)
T ss_pred CCCceEEEEE
Confidence 9986655433
No 65
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=85.16 E-value=2.6 Score=49.81 Aligned_cols=146 Identities=16% Similarity=0.139 Sum_probs=71.3
Q ss_pred EEEecCCCCCHhHHHHHHHHHH-HCCCCEEEEc-cc---CCc-cC-CCCc--eeeeeccchHHHHHHHHHHcCcEEEEec
Q 003076 47 SGSIHYPRSTPEMWEDLIRKAK-DGGLDVIDTY-VF---WNG-HE-PSPG--HYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (850)
Q Consensus 47 sG~~Hy~r~~~~~W~~~l~k~k-a~G~NtV~~y-v~---Wn~-hE-p~~G--~fdF~g~~dl~~fl~la~~~gL~vilrp 117 (850)
-|.-|.....++.|+..|+.++ +.||.-|++- +| ... .| ..+| .|||+ .|+.++|...++||+-++..
T Consensus 28 ~~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~vel 104 (486)
T PF01229_consen 28 VGSGRANLLLRADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPFVEL 104 (486)
T ss_dssp EEES-GGGGGBHHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEEEEE
T ss_pred cCCCchHHHhhHHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEEEEE
Confidence 3444555567788999999987 7899999873 22 111 11 1233 39999 89999999999999987776
Q ss_pred CceeccccCCCCCCcccccCCCeEeec----CChhhHHHHHHHHHHHHHHHhcc-ccccccCCceEEeccccccCCCccc
Q 003076 118 GPYVCAEWNFGGFPVWLKYVPGISFRT----DNGPFKVAMQGFTQKIVQMMKNE-KLFASQGGPIILSQIENEYGPESKS 192 (850)
Q Consensus 118 GPyicaEw~~GG~P~WL~~~p~~~~R~----~d~~y~~~~~~~~~~l~~~l~~~-~~~~~~gGpII~~QiENEyg~~~~~ 192 (850)
|- .|.++...+...+.. .-|.-.+++..+++++++++.++ ....-.. -.+.|=||.......
T Consensus 105 ~f----------~p~~~~~~~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~---W~fEiWNEPd~~~f~ 171 (486)
T PF01229_consen 105 GF----------MPMALASGYQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVST---WYFEIWNEPDLKDFW 171 (486)
T ss_dssp -S----------B-GGGBSS--EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTT---SEEEESS-TTSTTTS
T ss_pred Ee----------chhhhcCCCCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccc---eeEEeCcCCCccccc
Confidence 52 455554332221211 11223355555555555555421 1000000 135678886542110
Q ss_pred cCcchHHHHHHHHHHH
Q 003076 193 LGAAGHAYVNWAAKMA 208 (850)
Q Consensus 193 ~~~~~~~y~~~l~~~~ 208 (850)
......+|.+.-+..+
T Consensus 172 ~~~~~~ey~~ly~~~~ 187 (486)
T PF01229_consen 172 WDGTPEEYFELYDATA 187 (486)
T ss_dssp GGG-HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 1123445665444433
No 66
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=85.01 E-value=3.1 Score=46.58 Aligned_cols=112 Identities=17% Similarity=0.292 Sum_probs=71.1
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE-------cccCCccCCCCceeeee-c-cchHHHHHHHHHHcCcEEEEecCceeccccC
Q 003076 56 TPEMWEDLIRKAKDGGLDVIDT-------YVFWNGHEPSPGHYNFE-G-SYDLVRFIKTVQRVGLYAHLRIGPYVCAEWN 126 (850)
Q Consensus 56 ~~~~W~~~l~k~ka~G~NtV~~-------yv~Wn~hEp~~G~fdF~-g-~~dl~~fl~la~~~gL~vilrpGPyicaEw~ 126 (850)
.++.-++.|+.+|+.|+|+|-+ .|.+..-.|..-+..-. . ..|+.++++.++++|+|+|.|+=-+---.-
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~l- 89 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFKDPVL- 89 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEecChHH-
Confidence 4566788999999999999974 34454444433222221 1 269999999999999999999743221000
Q ss_pred CCCCCcccccCC-CeEeecCC-----hhhHHHHHHHHHHHHHHHhccc
Q 003076 127 FGGFPVWLKYVP-GISFRTDN-----GPFKVAMQGFTQKIVQMMKNEK 168 (850)
Q Consensus 127 ~GG~P~WL~~~p-~~~~R~~d-----~~y~~~~~~~~~~l~~~l~~~~ 168 (850)
..--|.|-.+.. |-..|..+ -+|.+++.+|.-.|+..++..+
T Consensus 90 a~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~G 137 (316)
T PF13200_consen 90 AEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKLG 137 (316)
T ss_pred hhhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHcC
Confidence 111455655321 21122111 2588999999999999998543
No 67
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=84.07 E-value=7.4 Score=41.99 Aligned_cols=131 Identities=16% Similarity=0.246 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEE-EecCceeccccCCCCCCcccccC
Q 003076 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH-LRIGPYVCAEWNFGGFPVWLKYV 137 (850)
Q Consensus 59 ~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vi-lrpGPyicaEw~~GG~P~WL~~~ 137 (850)
.|++.++.++++|+..|+..+. ..|+ .....+|+ ..++..+-++++++||.|. +.++ +.-.+
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~----------~~~~~---- 79 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWS-KEERLSLVKAIYETGVRIPSMCLS----------GHRRF---- 79 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCC-HHHHHHHHHHHHHcCCCceEEecc----------cccCc----
Confidence 5999999999999999999632 2222 11122333 3468999999999999865 3322 11000
Q ss_pred CCeEeecCChhhHHHHHHHHHHHHHHHhccccccccCCceEEeccccccCCCcc-ccCcchHHHHHHHHHHHhcCCCCc
Q 003076 138 PGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESK-SLGAAGHAYVNWAAKMAVGLDTGV 215 (850)
Q Consensus 138 p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~-~~~~~~~~y~~~l~~~~~~~g~~v 215 (850)
.+.+.|+.-+++..+.++++++..+ .+ |.++|.+---..+..... ..-..-.+.++.+.+++++.|+.+
T Consensus 80 ---~~~~~d~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l 149 (284)
T PRK13210 80 ---PFGSRDPATRERALEIMKKAIRLAQ--DL----GIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVML 149 (284)
T ss_pred ---CCCCCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 1223456656666667777777666 33 445654421000000000 000122356777888888888765
No 68
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=83.67 E-value=2.1 Score=48.63 Aligned_cols=71 Identities=24% Similarity=0.215 Sum_probs=47.5
Q ss_pred EEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEEEecCceec
Q 003076 46 ISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVC 122 (850)
Q Consensus 46 ~sG~~Hy~r~~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vilrpGPyic 122 (850)
++=++++...+.+..+..|++|+++|+..|=| .+|.|++..=+.- ..+..++++|+++||.|++-+.|=+.
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFT----SL~ipe~~~~~~~--~~~~~l~~~a~~~~~~v~~Disp~~l 72 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFT----SLHIPEDDPEDYL--ERLKELLKLAKELGMEVIADISPKVL 72 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEE----EE---------HH--HHHHHHHHHHHHCT-EEEEEE-CCHH
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEC----CCCcCCCCHHHHH--HHHHHHHHHHHHCCCEEEEECCHHHH
Confidence 55677777778999999999999999976655 7899985432221 37899999999999999999876443
No 69
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=83.38 E-value=2.3 Score=52.69 Aligned_cols=62 Identities=16% Similarity=0.215 Sum_probs=44.5
Q ss_pred HhHHHHHHHHHHHCCCCEEEE-ccc-------CCccCC---CCceeeeeccchHHHHHHHHHHcCcEEEEecCc
Q 003076 57 PEMWEDLIRKAKDGGLDVIDT-YVF-------WNGHEP---SPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (850)
Q Consensus 57 ~~~W~~~l~k~ka~G~NtV~~-yv~-------Wn~hEp---~~G~fdF~g~~dl~~fl~la~~~gL~vilrpGP 119 (850)
.+.|++.|..+|++|+|+|+. +|+ |.++-. .+ .-.|....+|.+|++.|+++||.|||-.=|
T Consensus 250 ~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~-~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~ 322 (758)
T PLN02447 250 REFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAV-SSRSGTPEDLKYLIDKAHSLGLRVLMDVVH 322 (758)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccc-ccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 456888999999999999996 342 332211 00 113445579999999999999999987533
No 70
>PRK14705 glycogen branching enzyme; Provisional
Probab=83.10 E-value=19 Score=47.20 Aligned_cols=56 Identities=14% Similarity=0.188 Sum_probs=38.6
Q ss_pred HHHHHHHHCCCCEEEE-ccc-------CCcc--CCCCceeeeeccchHHHHHHHHHHcCcEEEEec
Q 003076 62 DLIRKAKDGGLDVIDT-YVF-------WNGH--EPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (850)
Q Consensus 62 ~~l~k~ka~G~NtV~~-yv~-------Wn~h--Ep~~G~fdF~g~~dl~~fl~la~~~gL~vilrp 117 (850)
+.|.-+|++|+|+|+. +|+ |.+. -...=.=.|....||.+|++.|+++||.|||-.
T Consensus 770 ~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 770 ELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3468899999999996 553 4211 000001124456799999999999999999873
No 71
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.
Probab=82.88 E-value=1.7 Score=43.45 Aligned_cols=67 Identities=24% Similarity=0.236 Sum_probs=37.6
Q ss_pred eeeeccCCCCC--CCCCC-----CCCCccCCChhHHHHHHcCCCCceEEEec----CCCccC-CCCC--CCCceEEEEEE
Q 003076 775 IEFASFGTPSG--TCGSF-----QKGTCHAPNSHAMLEKECIGQESCSIFIS----SGVFGT-DPCP--NVLKRLSVQAV 840 (850)
Q Consensus 775 I~~A~YGR~~~--~C~~~-----~~~~C~~~~sl~~V~~~C~Gk~~C~i~a~----~~~Fg~-DPCp--gt~KYL~V~Y~ 840 (850)
|..|.||.... .+... ....+..-+.+-.++ |.=+.++-.... ..+.|. |||| |..|.|.|.|+
T Consensus 55 I~~A~YG~~~~~~~~~~~~~~~~~~~~~~~iDVTipLq--~lV~dS~L~l~~~~sKs~L~GF~DP~p~~ge~K~L~V~Y~ 132 (151)
T PF11875_consen 55 ILKAWYGNLPAKSDESNNDEPEDPDLDPPVIDVTIPLQ--ALVKDSQLILPEGVSKSGLPGFYDPCPFLGEPKQLRVRYR 132 (151)
T ss_pred EEEEEcCCcccccccccccccccccccCcEEEEhhhhh--hEeecCEEEEcCCCchhhCCCCCCCccccCCccEEEEEEE
Confidence 88999999742 33221 112233334443333 333344432222 123333 9999 88999999999
Q ss_pred eeC
Q 003076 841 CST 843 (850)
Q Consensus 841 C~p 843 (850)
...
T Consensus 133 f~g 135 (151)
T PF11875_consen 133 FRG 135 (151)
T ss_pred ECC
Confidence 753
No 72
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=82.48 E-value=1.3 Score=47.71 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=39.4
Q ss_pred HHHHHHHHHCCCCEEEEcccCCccCCCCc--eee-------eeccchHHHHHHHHHHcCcEEEEec
Q 003076 61 EDLIRKAKDGGLDVIDTYVFWNGHEPSPG--HYN-------FEGSYDLVRFIKTVQRVGLYAHLRI 117 (850)
Q Consensus 61 ~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G--~fd-------F~g~~dl~~fl~la~~~gL~vilrp 117 (850)
.+.|.-+|++|+|+|..-=++...+.--| .-| |....+|.++++.|+++||+|||-.
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 46788999999999997533332211111 122 2334699999999999999999875
No 73
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=79.91 E-value=2.9 Score=42.29 Aligned_cols=125 Identities=12% Similarity=0.076 Sum_probs=72.9
Q ss_pred HHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEEEecCceeccccCCCCCCcccccCCCeEee
Q 003076 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFR 143 (850)
Q Consensus 64 l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vilrpGPyicaEw~~GG~P~WL~~~p~~~~R 143 (850)
|+.++++|+..|+....+....... ...++++.++++++||.+..--.+.. +.. +....+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~~---~~~----------~~~~~~ 60 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPTN---FWS----------PDEENG 60 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEES---SSC----------TGTTST
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEecccc---ccc----------cccccc
Confidence 5789999999999876533222221 23799999999999999663321110 100 111123
Q ss_pred cCChhhHHHHHHHHHHHHHHHhccccccccCCceEEeccc--cccCCCccc-cCcchHHHHHHHHHHHhcCCCCc
Q 003076 144 TDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIE--NEYGPESKS-LGAAGHAYVNWAAKMAVGLDTGV 215 (850)
Q Consensus 144 ~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiE--NEyg~~~~~-~~~~~~~y~~~l~~~~~~~g~~v 215 (850)
+.++. ++...+.+.+.++..+ .+ |.+.|.+..- +........ .-..-.+.++.|.+.+++.|+.+
T Consensus 61 ~~~~~-r~~~~~~~~~~i~~a~--~l----g~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i 128 (213)
T PF01261_consen 61 SANDE-REEALEYLKKAIDLAK--RL----GAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRI 128 (213)
T ss_dssp TSSSH-HHHHHHHHHHHHHHHH--HH----TBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEE
T ss_pred Ccchh-hHHHHHHHHHHHHHHH--Hh----CCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceE
Confidence 34444 7777778888888887 33 5667777643 222111000 00133456677777777777654
No 74
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=79.76 E-value=2.9 Score=50.20 Aligned_cols=54 Identities=22% Similarity=0.378 Sum_probs=39.6
Q ss_pred HHHHHHHHHCCCCEEEE-ccc-------CCcc-----CCCCceeeeeccchHHHHHHHHHHcCcEEEEec
Q 003076 61 EDLIRKAKDGGLDVIDT-YVF-------WNGH-----EPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (850)
Q Consensus 61 ~~~l~k~ka~G~NtV~~-yv~-------Wn~h-----Ep~~G~fdF~g~~dl~~fl~la~~~gL~vilrp 117 (850)
.++|.-+|++|+|+|.. +|+ |.+. .+.+ .|.+..+|.+|++.|+++||.|||-.
T Consensus 114 ~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~---~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 114 IEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN---AYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45688899999999996 553 3211 1111 24456799999999999999999974
No 75
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=79.54 E-value=18 Score=39.19 Aligned_cols=97 Identities=11% Similarity=0.120 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHc-CcEEEEecCceeccccCCCCCCccccc
Q 003076 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRV-GLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (850)
Q Consensus 58 ~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~-gL~vilrpGPyicaEw~~GG~P~WL~~ 136 (850)
.-|++.|+.+|++|++.|++-+........+ .....+++++.++++++ ++.+.+- +||. +
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~i~~~-~~~~------------~-- 70 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR----PLKKERAEKFKAIAEEGPSICLSVH-APYL------------I-- 70 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC----CCCHHHHHHHHHHHHHcCCCcEEEE-cCce------------e--
Confidence 6699999999999999999876432111111 11345899999999999 6665543 2331 0
Q ss_pred CCCeEeecCChhhHHHHHHHHHHHHHHHhccccccccCCceEEeccc
Q 003076 137 VPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIE 183 (850)
Q Consensus 137 ~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiE 183 (850)
.+...++.-+++....+++.++..+ .+ |-+.|.+...
T Consensus 71 ----~~~~~~~~~r~~~~~~~~~~i~~A~--~l----G~~~v~~~~g 107 (279)
T cd00019 71 ----NLASPDKEKREKSIERLKDEIERCE--EL----GIRLLVFHPG 107 (279)
T ss_pred ----ccCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEECCC
Confidence 1223344445555556666666666 32 4456655544
No 76
>PRK01060 endonuclease IV; Provisional
Probab=79.35 E-value=32 Score=37.09 Aligned_cols=94 Identities=15% Similarity=0.228 Sum_probs=60.3
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEE--EEecCceeccccCCCCCCcccccC
Q 003076 60 WEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYA--HLRIGPYVCAEWNFGGFPVWLKYV 137 (850)
Q Consensus 60 W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~v--ilrpGPyicaEw~~GG~P~WL~~~ 137 (850)
+++.|++++++|++.|+..+. +-|.-..+.++- .++.++-++++++||.+ +.--+||.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~-~p~~~~~~~~~~---~~~~~lk~~~~~~gl~~~~~~~h~~~~---------------- 73 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTG-NPQQWKRKPLEE---LNIEAFKAACEKYGISPEDILVHAPYL---------------- 73 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECC-CCCCCcCCCCCH---HHHHHHHHHHHHcCCCCCceEEecceE----------------
Confidence 889999999999999998653 112212222222 26888999999999973 11123331
Q ss_pred CCeEeecCChhhHHHHHHHHHHHHHHHhccccccccCCceEEec
Q 003076 138 PGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQ 181 (850)
Q Consensus 138 p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 181 (850)
+.+-+.|+..+++..+.+++.++..+ .+ |-++|-+.
T Consensus 74 --~nl~~~d~~~r~~s~~~~~~~i~~A~--~l----ga~~vv~h 109 (281)
T PRK01060 74 --INLGNPNKEILEKSRDFLIQEIERCA--AL----GAKLLVFH 109 (281)
T ss_pred --ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12334567788888888888887776 43 44555554
No 77
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=78.56 E-value=8 Score=50.72 Aligned_cols=113 Identities=18% Similarity=0.304 Sum_probs=68.3
Q ss_pred cEEECCeEeEEEEE---EecCCCC--CHhHHHHHHHHHHHCCCCEEEE-ccc-CC---ccCCCCceee----e----ecc
Q 003076 35 AILINGQRRILISG---SIHYPRS--TPEMWEDLIRKAKDGGLDVIDT-YVF-WN---GHEPSPGHYN----F----EGS 96 (850)
Q Consensus 35 ~~~idG~p~~~~sG---~~Hy~r~--~~~~W~~~l~k~ka~G~NtV~~-yv~-Wn---~hEp~~G~fd----F----~g~ 96 (850)
.+.|+|++++.+.| +-..+++ +-+.|++.|+.+|++|+|+|.. +++ =. ..-...+++. | .+.
T Consensus 104 ~L~i~~~~~lPl~~i~iqTvlsK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~ 183 (1464)
T TIGR01531 104 MLYINADKFLPLDSIALQTVLAKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGK 183 (1464)
T ss_pred eeEECCCcccCcCceeeeeehhhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcH
Confidence 45666633343322 2334554 5678999999999999999985 555 11 1111122222 3 255
Q ss_pred chHHHHHHHHHHc-CcEEEEecCceeccccCCCCC-CcccccCCCeEeecCChhhHHHH
Q 003076 97 YDLVRFIKTVQRV-GLYAHLRIGPYVCAEWNFGGF-PVWLKYVPGISFRTDNGPFKVAM 153 (850)
Q Consensus 97 ~dl~~fl~la~~~-gL~vilrpGPyicaEw~~GG~-P~WL~~~p~~~~R~~d~~y~~~~ 153 (850)
.|+.++++.+++. ||++|+-. + |+.=+- =.||.++|+.-.-..+.+||+++
T Consensus 184 ~d~~~lV~~~h~~~Gm~~ilDv---V---~NHTa~ds~Wl~eHPEa~Yn~~~sP~L~~A 236 (1464)
T TIGR01531 184 NDVQALVEKLHRDWNVLSITDI---V---FNHTANNSPWLLEHPEAAYNCITSPHLRPA 236 (1464)
T ss_pred HHHHHHHHHHHHhcCCEEEEEe---e---ecccccCCHHHHhChHhhcCCCCCchhhhH
Confidence 7899999999996 99999874 1 333222 35887777754444444555443
No 78
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=76.85 E-value=27 Score=37.19 Aligned_cols=43 Identities=14% Similarity=0.233 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEEE
Q 003076 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHL 115 (850)
Q Consensus 59 ~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vil 115 (850)
-+++.+++++++|++.|+...++ + .++..+.++++++||.+..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~------------~--~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY------------D--WDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc------------c--CCHHHHHHHHHHcCCeEEE
Confidence 38899999999999999985322 1 3588899999999999764
No 79
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=76.50 E-value=6.2 Score=43.67 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=53.0
Q ss_pred ecCCC---CCHhHHHHHHHHHHHCCCCEEEEcccCCccCCC-Cceeeeecc--chHHHHHHHHHHcCcEEEEecCceecc
Q 003076 50 IHYPR---STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVCA 123 (850)
Q Consensus 50 ~Hy~r---~~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~-~G~fdF~g~--~dl~~fl~la~~~gL~vilrpGPyica 123 (850)
+|+.| ...+..++.++++|+.||..=.+.+-...+... -+.|+|+-. -|..++++..+++|+++++..=|+|+.
T Consensus 13 ~~~~~~~y~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~ 92 (308)
T cd06593 13 LWLSRSFYYDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQ 92 (308)
T ss_pred HHHHcccCCCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 34444 377888999999999997765544443333322 145666533 389999999999999999998888753
No 80
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=76.18 E-value=17 Score=39.40 Aligned_cols=125 Identities=14% Similarity=0.251 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEE-EecCceeccccCCCCCCcccccC
Q 003076 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH-LRIGPYVCAEWNFGGFPVWLKYV 137 (850)
Q Consensus 59 ~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vi-lrpGPyicaEw~~GG~P~WL~~~ 137 (850)
-|++.++.++++|+..|+..+. ..++ ....++++ ..+++.+-++++++||.|. +..+.. ..++
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~-------~~~~------ 85 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSAH-------RRFP------ 85 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEecccc-------cccC------
Confidence 4999999999999999998532 1111 01122333 2368899999999999875 332210 0011
Q ss_pred CCeEeecCChhhHHHHHHHHHHHHHHHhccccccccCCceEEeccccccCCCccccCc-------chHHHHHHHHHHHhc
Q 003076 138 PGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGA-------AGHAYVNWAAKMAVG 210 (850)
Q Consensus 138 p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~-------~~~~y~~~l~~~~~~ 210 (850)
+-+.|+.-++.....+++.++..+ .+ |.++|.+. |... .++. .-.+.++.|.+++++
T Consensus 86 ----~~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~i~~~-----~~~~-~~~~~~~~~~~~~~~~l~~l~~~A~~ 149 (283)
T PRK13209 86 ----LGSEDDAVRAQALEIMRKAIQLAQ--DL----GIRVIQLA-----GYDV-YYEQANNETRRRFIDGLKESVELASR 149 (283)
T ss_pred ----CCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEC-----Cccc-cccccHHHHHHHHHHHHHHHHHHHHH
Confidence 113455566666777777777777 33 56666542 1100 0110 113456777777777
Q ss_pred CCCCc
Q 003076 211 LDTGV 215 (850)
Q Consensus 211 ~g~~v 215 (850)
.|+.+
T Consensus 150 ~GV~i 154 (283)
T PRK13209 150 ASVTL 154 (283)
T ss_pred hCCEE
Confidence 77754
No 81
>PRK10785 maltodextrin glucosidase; Provisional
Probab=75.24 E-value=5.2 Score=48.64 Aligned_cols=58 Identities=19% Similarity=0.230 Sum_probs=41.8
Q ss_pred HHHHHHHHHHCCCCEEEE-cccCC--ccCCCCcee-----eeeccchHHHHHHHHHHcCcEEEEec
Q 003076 60 WEDLIRKAKDGGLDVIDT-YVFWN--GHEPSPGHY-----NFEGSYDLVRFIKTVQRVGLYAHLRI 117 (850)
Q Consensus 60 W~~~l~k~ka~G~NtV~~-yv~Wn--~hEp~~G~f-----dF~g~~dl~~fl~la~~~gL~vilrp 117 (850)
-.+.|.-+|++|+|+|-. +||=+ .|--....| .|.+..||.+|++.|++.||+|||-.
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 356788899999999996 67633 122111111 14455799999999999999999874
No 82
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=75.03 E-value=5.6 Score=33.98 Aligned_cols=33 Identities=15% Similarity=0.467 Sum_probs=24.9
Q ss_pred CCcccEEEEEECCEEEEEEEccccc--ceeEEeec
Q 003076 499 ESAGHAVHVFINGQFLGSAFGTREN--RRFTFSGP 531 (850)
Q Consensus 499 ~~~~D~a~VfVng~~vG~~~~~~~~--~~~~~~~~ 531 (850)
....|.|.||++++++|++++.... ..+.|++.
T Consensus 24 pk~~dsaEV~~g~EfiGvi~~DedeGe~Sy~f~M~ 58 (63)
T PF11324_consen 24 PKKDDSAEVYIGDEFIGVIYRDEDEGEVSYNFQMA 58 (63)
T ss_pred CCCCCceEEEeCCEEEEEEEeecCCCcEEEEEEEE
Confidence 3568999999999999999986433 34555543
No 83
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=74.27 E-value=39 Score=39.09 Aligned_cols=165 Identities=17% Similarity=0.139 Sum_probs=88.2
Q ss_pred ecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCccCCCC----ceeeeecc---chHHHHHHHHHHcCcEEEEecCceec
Q 003076 50 IHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSP----GHYNFEGS---YDLVRFIKTVQRVGLYAHLRIGPYVC 122 (850)
Q Consensus 50 ~Hy~r~~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~----G~fdF~g~---~dl~~fl~la~~~gL~vilrpGPyic 122 (850)
-+|+.+..+.-.+.+++++++|++.+.+=--|....... |.+.-+-. .-|..+.+.+++.||+.=|+..|-+.
T Consensus 50 ~~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v 129 (394)
T PF02065_consen 50 AYYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMV 129 (394)
T ss_dssp HHTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEE
T ss_pred ccCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccc
Confidence 457788888899999999999999777655686543222 33322211 13999999999999999998888765
Q ss_pred cccC--CCCCCcccccCCCeE---ee------cCChhhHHHHHHHHHHHHHHHhcccccc-ccCCceEEeccccccCCCc
Q 003076 123 AEWN--FGGFPVWLKYVPGIS---FR------TDNGPFKVAMQGFTQKIVQMMKNEKLFA-SQGGPIILSQIENEYGPES 190 (850)
Q Consensus 123 aEw~--~GG~P~WL~~~p~~~---~R------~~d~~y~~~~~~~~~~l~~~l~~~~~~~-~~gGpII~~QiENEyg~~~ 190 (850)
+.=. +-..|.|+...++.. -| ..+|..++++...+. ..++++++-| +=..+.-+ .|.|+..
T Consensus 130 ~~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~---~ll~~~gidYiK~D~n~~~----~~~~~~~ 202 (394)
T PF02065_consen 130 SPDSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVID---RLLREWGIDYIKWDFNRDI----TEAGSPS 202 (394)
T ss_dssp ESSSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHH---HHHHHTT-SEEEEE-TS-T----TS-SSTT
T ss_pred cchhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHH---HHHHhcCCCEEEeccccCC----CCCCCCC
Confidence 4221 234799998765421 12 224444444433333 3455444311 11111111 1222211
Q ss_pred cccCcchHHHHHHHH---HHHhcCCCCcceeeeCCC
Q 003076 191 KSLGAAGHAYVNWAA---KMAVGLDTGVPWVMCKED 223 (850)
Q Consensus 191 ~~~~~~~~~y~~~l~---~~~~~~g~~vp~~~~~~~ 223 (850)
.+....+|+.-+. +.+++...+|-+-.|.++
T Consensus 203 --~~~~~~~~~~~~y~l~~~L~~~~P~v~iE~CssG 236 (394)
T PF02065_consen 203 --LPEGYHRYVLGLYRLLDRLRARFPDVLIENCSSG 236 (394)
T ss_dssp --S-GHHHHHHHHHHHHHHHHHHHTTTSEEEE-BTT
T ss_pred --chHHHHHHHHHHHHHHHHHHHhCCCcEEEeccCC
Confidence 1123456665333 334455677778888853
No 84
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=74.08 E-value=5.8 Score=47.80 Aligned_cols=56 Identities=14% Similarity=0.197 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHCCCCEEEE-cccCCccCCCC-ceee----------eeccchHHHHHHHHHHcCcEEEEec
Q 003076 59 MWEDLIRKAKDGGLDVIDT-YVFWNGHEPSP-GHYN----------FEGSYDLVRFIKTVQRVGLYAHLRI 117 (850)
Q Consensus 59 ~W~~~l~k~ka~G~NtV~~-yv~Wn~hEp~~-G~fd----------F~g~~dl~~fl~la~~~gL~vilrp 117 (850)
-+.++|.-+|++|+++|-+ +|+-. |.. .-|| |....||.++++.|+++||+|||-.
T Consensus 34 gi~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 34 GVTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4668899999999999986 55522 211 1222 3445799999999999999999874
No 85
>PLN02960 alpha-amylase
Probab=73.85 E-value=6 Score=49.65 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=39.8
Q ss_pred HHHHHHHHHCCCCEEEE-ccc-------CCccCC--CCceeeeeccchHHHHHHHHHHcCcEEEEec
Q 003076 61 EDLIRKAKDGGLDVIDT-YVF-------WNGHEP--SPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (850)
Q Consensus 61 ~~~l~k~ka~G~NtV~~-yv~-------Wn~hEp--~~G~fdF~g~~dl~~fl~la~~~gL~vilrp 117 (850)
++.|.-+|++|+|+|+. +|+ |.+.-. -.=.-.|....+|.+|++.|+++||.|||-.
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 35689999999999996 554 332100 0000123345799999999999999999985
No 86
>PRK09505 malS alpha-amylase; Reviewed
Probab=73.77 E-value=5.7 Score=49.03 Aligned_cols=58 Identities=12% Similarity=0.130 Sum_probs=42.9
Q ss_pred HHHHHHHHHHCCCCEEEE-cccCCccCCC----Cc------------------eeeeeccchHHHHHHHHHHcCcEEEEe
Q 003076 60 WEDLIRKAKDGGLDVIDT-YVFWNGHEPS----PG------------------HYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (850)
Q Consensus 60 W~~~l~k~ka~G~NtV~~-yv~Wn~hEp~----~G------------------~fdF~g~~dl~~fl~la~~~gL~vilr 116 (850)
+.+.|.-+|++|+|+|-+ +++=+.|... .| .-.|....+|+.+++.|+++||+|||-
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 677899999999999985 5654443321 11 112444579999999999999999998
Q ss_pred c
Q 003076 117 I 117 (850)
Q Consensus 117 p 117 (850)
.
T Consensus 312 ~ 312 (683)
T PRK09505 312 V 312 (683)
T ss_pred E
Confidence 5
No 87
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=73.30 E-value=43 Score=35.92 Aligned_cols=129 Identities=13% Similarity=0.120 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEEEecCceeccccCCCCCCcccccCC
Q 003076 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVP 138 (850)
Q Consensus 59 ~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vilrpGPyicaEw~~GG~P~WL~~~p 138 (850)
.|++.|+.++++|++.|++..-. .|+-.+ +++ ..+++++-++++++||.|.. .+|. .+++|..+.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~-~~~~~~---~~~-~~~~~~l~~~~~~~gl~v~s-~~~~------~~~~~~~~~--- 78 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGR-PHAFAP---DLK-AGGIKQIKALAQTYQMPIIG-YTPE------TNGYPYNMM--- 78 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCC-cccccc---ccC-chHHHHHHHHHHHcCCeEEE-ecCc------ccCcCcccc---
Confidence 48999999999999999983211 011111 121 23688899999999999753 2221 123433322
Q ss_pred CeEeecCChhhHHHHHHHHHHHHHHHhccccccccCCceEEeccccccCCCccccC---cchHHHHHHHHHHHhcCCCCc
Q 003076 139 GISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLG---AAGHAYVNWAAKMAVGLDTGV 215 (850)
Q Consensus 139 ~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~---~~~~~y~~~l~~~~~~~g~~v 215 (850)
..++.-+++..+.+++.++.-+ .+ |.+.|.+-.-.. +... ... ..-.+.++.|.+.+++.|+.+
T Consensus 79 -----~~~~~~r~~~~~~~~~~i~~a~--~l----Ga~~i~~~~~~~-~~~~-~~~~~~~~~~~~l~~l~~~a~~~gv~l 145 (275)
T PRK09856 79 -----LGDEHMRRESLDMIKLAMDMAK--EM----NAGYTLISAAHA-GYLT-PPNVIWGRLAENLSELCEYAENIGMDL 145 (275)
T ss_pred -----CCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEEcCCCC-CCCC-CHHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 1234445555556666666555 32 445554421111 1000 000 122346777778887877654
No 88
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=72.65 E-value=5.9 Score=48.23 Aligned_cols=55 Identities=20% Similarity=0.383 Sum_probs=37.6
Q ss_pred HHHHHHHHCCCCEEEE-ccc---------------CCccC-----CCCceee----ee--ccchHHHHHHHHHHcCcEEE
Q 003076 62 DLIRKAKDGGLDVIDT-YVF---------------WNGHE-----PSPGHYN----FE--GSYDLVRFIKTVQRVGLYAH 114 (850)
Q Consensus 62 ~~l~k~ka~G~NtV~~-yv~---------------Wn~hE-----p~~G~fd----F~--g~~dl~~fl~la~~~gL~vi 114 (850)
+.|.-+|++|+|+|+. +|+ |-+.- |. +.|- |- ...+|.+|++.|+++||.||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~-~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPE-GSYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcC-hhhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 4589999999999996 554 22210 10 1111 10 12689999999999999999
Q ss_pred Eec
Q 003076 115 LRI 117 (850)
Q Consensus 115 lrp 117 (850)
|-.
T Consensus 247 lDv 249 (605)
T TIGR02104 247 MDV 249 (605)
T ss_pred EEE
Confidence 985
No 89
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=72.30 E-value=7 Score=46.90 Aligned_cols=60 Identities=15% Similarity=0.134 Sum_probs=42.7
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE-cccCCccCCCCceee----------eeccchHHHHHHHHHHcCcEEEEec
Q 003076 56 TPEMWEDLIRKAKDGGLDVIDT-YVFWNGHEPSPGHYN----------FEGSYDLVRFIKTVQRVGLYAHLRI 117 (850)
Q Consensus 56 ~~~~W~~~l~k~ka~G~NtV~~-yv~Wn~hEp~~G~fd----------F~g~~dl~~fl~la~~~gL~vilrp 117 (850)
.-.-+.+.|.-+|++|+|+|-. +||=+-. ...-|| |....|+.++++.|+++||+|||-.
T Consensus 26 dl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~--~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 26 DFPGLTSKLDYLKWLGVDALWLLPFFQSPL--RDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred CHHHHHHhHHHHHHCCCCEEEECCCcCCCC--CCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3445788899999999999986 5541100 011222 3445799999999999999999863
No 90
>PRK12313 glycogen branching enzyme; Provisional
Probab=72.25 E-value=6.4 Score=48.21 Aligned_cols=54 Identities=13% Similarity=0.225 Sum_probs=37.6
Q ss_pred HHHHHHCCCCEEEE-ccc-------CCccCC--CCceeeeeccchHHHHHHHHHHcCcEEEEec
Q 003076 64 IRKAKDGGLDVIDT-YVF-------WNGHEP--SPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (850)
Q Consensus 64 l~k~ka~G~NtV~~-yv~-------Wn~hEp--~~G~fdF~g~~dl~~fl~la~~~gL~vilrp 117 (850)
|.-+|++|+|+|.. +|+ |.+.-. ..=.-.|.+..||.+|++.|+++||.|||-.
T Consensus 177 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 177 IPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 58899999999995 554 211000 0000124456799999999999999999984
No 91
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=71.84 E-value=5.7 Score=47.74 Aligned_cols=59 Identities=14% Similarity=0.157 Sum_probs=42.8
Q ss_pred HhHHHHHHHHHHHCCCCEEEE-cccCCccCCCCceee----------eeccchHHHHHHHHHHcCcEEEEec
Q 003076 57 PEMWEDLIRKAKDGGLDVIDT-YVFWNGHEPSPGHYN----------FEGSYDLVRFIKTVQRVGLYAHLRI 117 (850)
Q Consensus 57 ~~~W~~~l~k~ka~G~NtV~~-yv~Wn~hEp~~G~fd----------F~g~~dl~~fl~la~~~gL~vilrp 117 (850)
-.-+.++|.-+|++|+|+|-+ +++-+-.. ..-|+ |....+|.+|++.|+++||+|||-.
T Consensus 26 ~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~--~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 26 LRGIIEKLDYLKKLGVDYIWLNPFYVSPQK--DNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHHHHHhHHHHHHcCCCEEEECCcccCCCC--CCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 444778899999999999986 45532111 01222 3445799999999999999999874
No 92
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=71.70 E-value=55 Score=37.69 Aligned_cols=89 Identities=10% Similarity=0.086 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHCCCCEEEEc----ccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEEE-ecCceeccccCCCCCCc
Q 003076 58 EMWEDLIRKAKDGGLDVIDTY----VFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHL-RIGPYVCAEWNFGGFPV 132 (850)
Q Consensus 58 ~~W~~~l~k~ka~G~NtV~~y----v~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vil-rpGPyicaEw~~GG~P~ 132 (850)
....+++++++++|+..|+.. ++|..-+.+ -..++.++-++++++||.|.. -++-+.+..|..|
T Consensus 32 ~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e-------~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g---- 100 (382)
T TIGR02631 32 LDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQE-------RDQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDG---- 100 (382)
T ss_pred cCHHHHHHHHHHhCCCEEEecccccCCCCCChhH-------HHHHHHHHHHHHHHhCCeEEEeeccccCCccccCC----
Confidence 346689999999999999964 222111100 023578899999999999663 3321111111111
Q ss_pred ccccCCCeEeecCChhhHHHHHHHHHHHHHHHh
Q 003076 133 WLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (850)
Q Consensus 133 WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (850)
-+-+.|+..+++.-+.+++.++.-+
T Consensus 101 --------~las~d~~vR~~ai~~~kraId~A~ 125 (382)
T TIGR02631 101 --------GFTSNDRSVRRYALRKVLRNMDLGA 125 (382)
T ss_pred --------CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1334467776666666666666666
No 93
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=71.61 E-value=23 Score=43.69 Aligned_cols=110 Identities=13% Similarity=0.078 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHCCCCEEE---------------EcccCCccCCCCceee-eeccchHHHHHHHHHHcCcEEEEecCcee
Q 003076 58 EMWEDLIRKAKDGGLDVID---------------TYVFWNGHEPSPGHYN-FEGSYDLVRFIKTVQRVGLYAHLRIGPYV 121 (850)
Q Consensus 58 ~~W~~~l~k~ka~G~NtV~---------------~yv~Wn~hEp~~G~fd-F~g~~dl~~fl~la~~~gL~vilrpGPyi 121 (850)
+.-...|+.+|++|+|||- .|++| -|=| |+-| |+ .-...++.+.|++|..|..||-
T Consensus 334 ~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~-~~lp--~r~d~f~-----~~aw~l~~r~~v~v~AWmp~~~ 405 (671)
T PRK14582 334 RNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPN-RLLP--MRADLFN-----RVAWQLRTRAGVNVYAWMPVLS 405 (671)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCc-cccc--cccCCcC-----HHHHHHHHhhCCEEEEecccee
Confidence 4477789999999999996 46667 3333 3333 11 2235569999999999999995
Q ss_pred cc---------ccCCCCCCcccccCCCeEeecCChhhHHHHHHHHHHHHHHHhccccccccCCceEEecccccc
Q 003076 122 CA---------EWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEY 186 (850)
Q Consensus 122 ca---------Ew~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEy 186 (850)
.. +++..+-|..+. |+-..| - .+|..++++|++.|.+-|+.+ .+|=++|.+.+-
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~r-l-~P~~pe~r~~i~~i~~dla~~-------~~~dGilf~Dd~ 468 (671)
T PRK14582 406 FDLDPTLPRVKRLDTGEGKAQIH--PEQYRR-L-SPFDDRVRAQVGMLYEDLAGH-------AAFDGILFHDDA 468 (671)
T ss_pred eccCCCcchhhhccccCCccccC--CCCCcC-C-CCCCHHHHHHHHHHHHHHHHh-------CCCceEEecccc
Confidence 32 121111121111 110112 1 346788999999999999843 256677766653
No 94
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=69.64 E-value=81 Score=33.70 Aligned_cols=50 Identities=20% Similarity=0.338 Sum_probs=38.1
Q ss_pred EecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEEE
Q 003076 49 SIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHL 115 (850)
Q Consensus 49 ~~Hy~r~~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vil 115 (850)
++.|-+.+ ++++|++++++|++.|+... + + ..+++.+.++++++||.+..
T Consensus 9 ~~~~~~~~---l~~~l~~~a~~Gf~~VEl~~------~----~----~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 9 SMLFGEYD---FLARFEKAAQCGFRGVEFMF------P----Y----DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred ehhccCCC---HHHHHHHHHHhCCCEEEEcC------C----C----CCCHHHHHHHHHHcCCcEEE
Confidence 34454554 77899999999999999832 1 1 13699999999999999754
No 95
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=68.71 E-value=51 Score=36.34 Aligned_cols=70 Identities=16% Similarity=0.217 Sum_probs=51.2
Q ss_pred ecCCCC---CHhHHHHHHHHHHHCCCCEEEEcccCCccCC--------CCceeeeecc--chHHHHHHHHHHcCcEEEEe
Q 003076 50 IHYPRS---TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP--------SPGHYNFEGS--YDLVRFIKTVQRVGLYAHLR 116 (850)
Q Consensus 50 ~Hy~r~---~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp--------~~G~fdF~g~--~dl~~fl~la~~~gL~vilr 116 (850)
+|..|. +.+.-++.++++++.||-.=.+++=...|.- .-+.|+|+.. -|..++++..++.|+++++.
T Consensus 14 ~~qsr~~y~s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~ 93 (292)
T cd06595 14 NWWSRYWPYSDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLN 93 (292)
T ss_pred hHhhCCcCCCHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEE
Confidence 455552 6777899999999999987666654333331 2356777643 38999999999999999988
Q ss_pred cCc
Q 003076 117 IGP 119 (850)
Q Consensus 117 pGP 119 (850)
.=|
T Consensus 94 v~P 96 (292)
T cd06595 94 LHP 96 (292)
T ss_pred eCC
Confidence 643
No 96
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=67.61 E-value=9.9 Score=45.80 Aligned_cols=81 Identities=20% Similarity=0.313 Sum_probs=50.6
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEc-ccCCccCCCCcee---e-----eecc----chHHHHHHHHHHcCcEEEEecCceec
Q 003076 56 TPEMWEDLIRKAKDGGLDVIDTY-VFWNGHEPSPGHY---N-----FEGS----YDLVRFIKTVQRVGLYAHLRIGPYVC 122 (850)
Q Consensus 56 ~~~~W~~~l~k~ka~G~NtV~~y-v~Wn~hEp~~G~f---d-----F~g~----~dl~~fl~la~~~gL~vilrpGPyic 122 (850)
.++.=++.|..|+...||.|+.| ..|.+|.|-|+.= + +.++ .-+..+|+.|++.||.++.=--=|-.
T Consensus 116 ~~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa 195 (559)
T PF13199_consen 116 SAEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAA 195 (559)
T ss_dssp GHHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEE
T ss_pred CchhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhcc
Confidence 34567889999999999999999 7799999977543 2 2222 36889999999999998854332322
Q ss_pred ccc--CCCCCCccccc
Q 003076 123 AEW--NFGGFPVWLKY 136 (850)
Q Consensus 123 aEw--~~GG~P~WL~~ 136 (850)
-+. ..|-.|.|-+-
T Consensus 196 ~~~~~~~gv~~eW~ly 211 (559)
T PF13199_consen 196 NNNYEEDGVSPEWGLY 211 (559)
T ss_dssp ETT--S--SS-GGBEE
T ss_pred ccCcccccCCchhhhh
Confidence 222 35667899863
No 97
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=67.03 E-value=7.2 Score=42.08 Aligned_cols=52 Identities=19% Similarity=0.446 Sum_probs=39.2
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEEEecC
Q 003076 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (850)
Q Consensus 57 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vilrpG 118 (850)
+...++-|+.+|++||++|++ ..|..+.+ ..+..++|+.|+++|++|+--.|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEi---------SdGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEI---------SDGTIDLP-EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEe---------cCCceeCC-HHHHHHHHHHHHHCCCEEeeccc
Confidence 566788999999999999998 55666554 24678999999999999999988
No 98
>PLN02361 alpha-amylase
Probab=65.90 E-value=12 Score=43.35 Aligned_cols=57 Identities=12% Similarity=0.106 Sum_probs=39.5
Q ss_pred HHHHHHHHHCCCCEEEEcccCC---ccCCCCce-ee----eeccchHHHHHHHHHHcCcEEEEec
Q 003076 61 EDLIRKAKDGGLDVIDTYVFWN---GHEPSPGH-YN----FEGSYDLVRFIKTVQRVGLYAHLRI 117 (850)
Q Consensus 61 ~~~l~k~ka~G~NtV~~yv~Wn---~hEp~~G~-fd----F~g~~dl~~fl~la~~~gL~vilrp 117 (850)
.+.|.-++++|+++|-+.=+.. .|--.+.. |+ |....+|.++++.|+++||+||+-.
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 4467778999999998743322 22222222 22 3345799999999999999999875
No 99
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=65.19 E-value=29 Score=40.10 Aligned_cols=53 Identities=25% Similarity=0.322 Sum_probs=42.4
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEEEec
Q 003076 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (850)
Q Consensus 56 ~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vilrp 117 (850)
..+.|+++++.+|++||+....=+- ....+.. .-|...++.|++.|++++|-+
T Consensus 15 t~~dw~~di~~A~~~GIDgFaLNig------~~d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFALNIG------SSDSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecc------cCCcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 7899999999999999999888554 1112222 368889999999999999986
No 100
>KOG4729 consensus Galactoside-binding lectin [General function prediction only]
Probab=64.37 E-value=7 Score=42.17 Aligned_cols=86 Identities=9% Similarity=-0.103 Sum_probs=63.8
Q ss_pred CCCCcEEEEcCCCCeEeEeeeeccCCCC---CCCCCC----CCCCccCCChhHHHHHHcCCCCceEEEecCCCccCCCC-
Q 003076 757 TGNAKVLLQCAPGQSITSIEFASFGTPS---GTCGSF----QKGTCHAPNSHAMLEKECIGQESCSIFISSGVFGTDPC- 828 (850)
Q Consensus 757 ce~~~~~L~C~~g~~Is~I~~A~YGR~~---~~C~~~----~~~~C~~~~sl~~V~~~C~Gk~~C~i~a~~~~Fg~DPC- 828 (850)
|..+++..-|+....+ .++.+.+++.+ ..|+.- ..-.|.....+..+...|.+++.|++..++.-++ -+|
T Consensus 140 ~~p~~~~~~~~~~~~~-~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ct~~~~~~~~~-~~~~ 217 (265)
T KOG4729|consen 140 CTPSPTDPPRSEIRLE-CREGRRLAVYSAVMKTSPQKDPETEIRHECVSSVLPQLLRQCHAKEGCTLKSDGIKGH-CRHG 217 (265)
T ss_pred ecCCCCCCccCcccch-hhhcccccccccccccCCCCcccCCCCceeecccchhhhhcccccCCceeecCCcccc-cccc
Confidence 6667777778877777 68778888763 456532 2333434467888999999999999999999887 566
Q ss_pred CCCCceEEEEEEeeCC
Q 003076 829 PNVLKRLSVQAVCSTA 844 (850)
Q Consensus 829 pgt~KYL~V~Y~C~p~ 844 (850)
++..+|+.|.+.|.+.
T Consensus 218 ~~~~~~~~~n~e~~~~ 233 (265)
T KOG4729|consen 218 HLHKVYVTVTEEIFSE 233 (265)
T ss_pred ceeEEEEEecccccch
Confidence 4457899999998764
No 101
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=63.91 E-value=25 Score=38.08 Aligned_cols=71 Identities=13% Similarity=0.216 Sum_probs=53.7
Q ss_pred ecCCCC---CHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCcee--eeecc--chHHHHHHHHHHcCcEEEEecCcee
Q 003076 50 IHYPRS---TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHY--NFEGS--YDLVRFIKTVQRVGLYAHLRIGPYV 121 (850)
Q Consensus 50 ~Hy~r~---~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~f--dF~g~--~dl~~fl~la~~~gL~vilrpGPyi 121 (850)
+|..|. ..+..++.++.+++.||-.=.+.+-+...+. -+.| +|+.. -|..++++..+++|++|++..=|+|
T Consensus 13 ~~~~~~~~~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 13 YWLSRYGYGDQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 344443 7788899999999999986666655554443 4666 55432 4899999999999999999988887
No 102
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=63.23 E-value=10 Score=49.96 Aligned_cols=56 Identities=25% Similarity=0.402 Sum_probs=39.7
Q ss_pred HHHHHHHHCCCCEEEE-cccCCccCCC---Cce-----ee----------ee--ccchHHHHHHHHHHcCcEEEEec
Q 003076 62 DLIRKAKDGGLDVIDT-YVFWNGHEPS---PGH-----YN----------FE--GSYDLVRFIKTVQRVGLYAHLRI 117 (850)
Q Consensus 62 ~~l~k~ka~G~NtV~~-yv~Wn~hEp~---~G~-----fd----------F~--g~~dl~~fl~la~~~gL~vilrp 117 (850)
+.|.-+|++|+|+|+. +|+=...|.. .|. || |. ...++.++++.|+++||.|||-.
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 3566899999999996 6663322221 110 22 23 56789999999999999999984
No 103
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=62.32 E-value=34 Score=37.42 Aligned_cols=76 Identities=21% Similarity=0.342 Sum_probs=59.8
Q ss_pred cEEECCeEeEEEEEEecCCCC-CHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeee--ccchHHHHHHHHHHcCc
Q 003076 35 AILINGQRRILISGSIHYPRS-TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFE--GSYDLVRFIKTVQRVGL 111 (850)
Q Consensus 35 ~~~idG~p~~~~sG~~Hy~r~-~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~--g~~dl~~fl~la~~~gL 111 (850)
.+.+.+.+++++.| +--+ .++.-.+.-+++|++|+..++.|.|=+...| +.|. |...+..+-+.|++.||
T Consensus 20 ~~~~g~~~~~~iaG---PCsie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~----~s~~G~g~~gl~~l~~~~~~~Gl 92 (266)
T PRK13398 20 DVVIGGEEKIIIAG---PCAVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSP----YSFQGLGEEGLKILKEVGDKYNL 92 (266)
T ss_pred CEEEcCCCEEEEEe---CCcCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCC----CccCCcHHHHHHHHHHHHHHcCC
Confidence 36777778889988 2333 6777888999999999999999998754443 3555 46789999999999999
Q ss_pred EEEEec
Q 003076 112 YAHLRI 117 (850)
Q Consensus 112 ~vilrp 117 (850)
.++-.|
T Consensus 93 ~~~te~ 98 (266)
T PRK13398 93 PVVTEV 98 (266)
T ss_pred CEEEee
Confidence 988775
No 104
>PRK09989 hypothetical protein; Provisional
Probab=62.15 E-value=63 Score=34.53 Aligned_cols=42 Identities=17% Similarity=0.360 Sum_probs=33.7
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEEE
Q 003076 60 WEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHL 115 (850)
Q Consensus 60 W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vil 115 (850)
.+++|++++++|+..|++..+|. .+.+.+.++.+++||.|..
T Consensus 17 l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 17 FIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred HHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEE
Confidence 67899999999999999854332 2367788889999999774
No 105
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=61.60 E-value=1.1e+02 Score=32.94 Aligned_cols=101 Identities=11% Similarity=0.112 Sum_probs=63.8
Q ss_pred EEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCce-eeeeccchHHHHHHHHHHcCcEEEEecCceeccccC
Q 003076 48 GSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGH-YNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWN 126 (850)
Q Consensus 48 G~~Hy~r~~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~-fdF~g~~dl~~fl~la~~~gL~vilrpGPyicaEw~ 126 (850)
|..+..+-+ -++.|+++.++|++.|+.. ..+|+.-. -+++ ..+++++.++++++||.+.+- +||.
T Consensus 3 g~~~~~~~~---~~~~~~~~~~~G~~~vel~----~~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~h-~p~~----- 68 (273)
T smart00518 3 GAHVSAAGG---LYKAFIEAVDIGARSFQLF----LGNPRSWKGVRLS-EETAEKFKEALKENNIDVSVH-APYL----- 68 (273)
T ss_pred eEEEcccCc---HhHHHHHHHHcCCCEEEEE----CCCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEEE-CCce-----
Confidence 444444544 3478999999999999983 33332210 0222 126888999999999986542 3431
Q ss_pred CCCCCcccccCCCeEeecCChhhHHHHHHHHHHHHHHHhccccccccCCceEEec
Q 003076 127 FGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQ 181 (850)
Q Consensus 127 ~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 181 (850)
+.+.+.|+..+++..+++++.++..+ .+ |.++|.+.
T Consensus 69 -------------~nl~s~d~~~r~~~~~~l~~~i~~A~--~l----Ga~~vv~h 104 (273)
T smart00518 69 -------------INLASPDKEKVEKSIERLIDEIKRCE--EL----GIKALVFH 104 (273)
T ss_pred -------------ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12345577777777788888887776 33 45665553
No 106
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=61.48 E-value=14 Score=43.80 Aligned_cols=113 Identities=14% Similarity=0.131 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCccCCC---CceeeeeccchHHHHHHHHHHcCcEEEEecCceeccccCCCCCCcccc
Q 003076 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPS---PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK 135 (850)
Q Consensus 59 ~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~---~G~fdF~g~~dl~~fl~la~~~gL~vilrpGPyicaEw~~GG~P~WL~ 135 (850)
.|+++++.||++|++.-+.-|-|...=|. .+..+-.|...-..+|+...++||..++-. + .=.+|.||-
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL-------f-HwDlPq~Le 163 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL-------F-HWDLPQALE 163 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE-------e-cCCCCHHHH
Confidence 48999999999999999999999987774 356788888888899999999999966552 1 234799997
Q ss_pred c-CCCeEeecCChhhHHHHHHHHHHHHHHHhccccccccCCceEEec
Q 003076 136 Y-VPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQ 181 (850)
Q Consensus 136 ~-~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 181 (850)
+ .-+-.-+..=..|+++++--|++...++| .+..=|...|..++
T Consensus 164 DeYgGwLn~~ivedF~~yA~~CF~~fGDrVK--~WiT~NEP~v~s~~ 208 (524)
T KOG0626|consen 164 DEYGGWLNPEIVEDFRDYADLCFQEFGDRVK--HWITFNEPNVFSIG 208 (524)
T ss_pred HHhccccCHHHHHHHHHHHHHHHHHhcccce--eeEEecccceeeee
Confidence 6 44432233335688888888999888888 54433555555444
No 107
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=61.24 E-value=28 Score=29.15 Aligned_cols=55 Identities=11% Similarity=0.117 Sum_probs=43.2
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEEE
Q 003076 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHL 115 (850)
Q Consensus 57 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vil 115 (850)
|..-.+.++-+.+.|+|...+|++= ++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIAD--TSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 4456788899999999999999732 333 58888765 5778999999999988764
No 108
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=60.84 E-value=8.2 Score=39.25 Aligned_cols=60 Identities=23% Similarity=0.324 Sum_probs=26.7
Q ss_pred CceeEEECCeeeeeccc-ccccCCCCccccCCCcCCccccCCCCCcceeeeecCcccccCCccEEEEEeeeC
Q 003076 646 GKGQVWINGQSIGRYWM-AYAKGDCKTCSYAGTFRPINCQRRCGHPTQRWYHVPRSWLKPTKNLLVVFEELG 716 (850)
Q Consensus 646 gKG~vwVNG~nLGRYW~-~~~~g~~~~~~~~G~~~~~~~~~~cg~PQqtLYhVP~~~Lk~g~N~IvvfEe~g 716 (850)
+.=+|.||| ..+..+. ..++ +.|.+++ -+-+|..+.--+-||+.+|++|.|+|.|=-..|
T Consensus 93 ~~~~V~vNg-~~~~~~~~~~~~---d~~~~r~-------g~~~G~~~~~~~~ipa~~L~~G~Nti~lt~~~g 153 (167)
T PF14683_consen 93 GRLQVSVNG-WSGPFPSAPFGN---DNAIYRS-------GIHRGNYRLYEFDIPASLLKAGENTITLTVPSG 153 (167)
T ss_dssp -EEEEEETT-EE--------------S--GGG-------T---S---EEEEEE-TTSS-SEEEEEEEEEE-S
T ss_pred CCEEEEEcC-ccCCccccccCC---CCceeeC-------ceecccEEEEEEEEcHHHEEeccEEEEEEEccC
Confidence 344799999 7777663 1211 2333432 122344566667799999999999987643333
No 109
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=60.77 E-value=69 Score=34.50 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHCCCCEEEEcc
Q 003076 58 EMWEDLIRKAKDGGLDVIDTYV 79 (850)
Q Consensus 58 ~~W~~~l~k~ka~G~NtV~~yv 79 (850)
-.|+++|.-+|++||+.|+.-|
T Consensus 18 ~sW~erl~~AK~~GFDFvEmSv 39 (287)
T COG3623 18 FSWLERLALAKELGFDFVEMSV 39 (287)
T ss_pred CCHHHHHHHHHHcCCCeEEEec
Confidence 4499999999999999999865
No 110
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=59.88 E-value=18 Score=45.45 Aligned_cols=64 Identities=19% Similarity=0.115 Sum_probs=45.9
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE-cccCC----ccCCCCc-----eeeeeccchHHHHHHHHHHcCcEEEEecCc
Q 003076 56 TPEMWEDLIRKAKDGGLDVIDT-YVFWN----GHEPSPG-----HYNFEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (850)
Q Consensus 56 ~~~~W~~~l~k~ka~G~NtV~~-yv~Wn----~hEp~~G-----~fdF~g~~dl~~fl~la~~~gL~vilrpGP 119 (850)
+-+.|.+.|.-++++|+++|.. +++=+ .|--..- .-.|.+..+|.+|++.|+++||.|||-.=|
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 5566899999999999999976 45421 1111100 112456789999999999999999998644
No 111
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=59.58 E-value=20 Score=39.97 Aligned_cols=71 Identities=14% Similarity=0.222 Sum_probs=53.0
Q ss_pred ecCCCC---CHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCc--eeeeeccc--hHHHHHHHHHHcCcEEEEecCcee
Q 003076 50 IHYPRS---TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPG--HYNFEGSY--DLVRFIKTVQRVGLYAHLRIGPYV 121 (850)
Q Consensus 50 ~Hy~r~---~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G--~fdF~g~~--dl~~fl~la~~~gL~vilrpGPyi 121 (850)
+|..|. ..+.-++.++++++.||-.=.+.+=|.... ..+ .|+|+..+ |..++|+..+++|++|++..=|+|
T Consensus 13 ~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v 90 (319)
T cd06591 13 FWQSKERYKTQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTF 90 (319)
T ss_pred HHHhcccCCCHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCc
Confidence 344453 677788999999999888766655554433 334 77777543 899999999999999999876666
No 112
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=59.03 E-value=27 Score=35.44 Aligned_cols=56 Identities=23% Similarity=0.271 Sum_probs=32.2
Q ss_pred ceeeeCCcccEEEEEECCEEEEEEE----c-ccccc--eeEEeecccccCCCCeEEEEEecCCc
Q 003076 494 PTLTVESAGHAVHVFINGQFLGSAF----G-TRENR--RFTFSGPANLRAGINKIALLSIAVGL 550 (850)
Q Consensus 494 ~~L~v~~~~D~a~VfVng~~vG~~~----~-~~~~~--~~~~~~~i~l~~g~~~L~ILven~Gr 550 (850)
..|.|...+ +-.+||||+.||.-. . ..... -.+++++--|+.|.|.|.+++-+...
T Consensus 6 A~l~isa~g-~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg~gw~ 68 (172)
T PF08531_consen 6 ARLYISALG-RYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLGNGWY 68 (172)
T ss_dssp -EEEEEEES-EEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--TTEEEEEEEEEE--S
T ss_pred EEEEEEeCe-eEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCCCCCEEEEEEeCCcc
Confidence 466666665 448999999999753 1 11111 12345455578899999999976443
No 113
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=58.34 E-value=31 Score=38.28 Aligned_cols=68 Identities=18% Similarity=0.367 Sum_probs=52.2
Q ss_pred CCCCHhHHHHHHHHHHHCCCC--EEEEcccCCccCCCCceeeeecc--chHHHHHHHHHHcCcEEEEecCceecc
Q 003076 53 PRSTPEMWEDLIRKAKDGGLD--VIDTYVFWNGHEPSPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVCA 123 (850)
Q Consensus 53 ~r~~~~~W~~~l~k~ka~G~N--tV~~yv~Wn~hEp~~G~fdF~g~--~dl~~fl~la~~~gL~vilrpGPyica 123 (850)
.....+.-++.++++++.|+. +|-+=..|- ..-|.|.|+-. -|..++++..++.|+++++..=|+|..
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~ 96 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINT 96 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCC
Confidence 456888899999999999965 444434452 34576776543 389999999999999999998888864
No 114
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=58.26 E-value=14 Score=45.65 Aligned_cols=55 Identities=16% Similarity=0.273 Sum_probs=37.4
Q ss_pred HHHHHHHCCCCEEEE-cccCCccC---CCCc-----eee----------ee---ccchHHHHHHHHHHcCcEEEEec
Q 003076 63 LIRKAKDGGLDVIDT-YVFWNGHE---PSPG-----HYN----------FE---GSYDLVRFIKTVQRVGLYAHLRI 117 (850)
Q Consensus 63 ~l~k~ka~G~NtV~~-yv~Wn~hE---p~~G-----~fd----------F~---g~~dl~~fl~la~~~gL~vilrp 117 (850)
.|.-+|++|+|+|.. +|+=...+ ...| -|| |. ...+|.+|++.|+++||.|||-.
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 477899999999996 56511111 1111 011 11 24689999999999999999985
No 115
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=58.19 E-value=15 Score=33.01 Aligned_cols=50 Identities=20% Similarity=0.245 Sum_probs=33.4
Q ss_pred ceeeeCCcccEEEEEECCEEEEEEEcccccceeEEeecccc-cCCCCeEEEEEecCCcc
Q 003076 494 PTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANL-RAGINKIALLSIAVGLP 551 (850)
Q Consensus 494 ~~L~v~~~~D~a~VfVng~~vG~~~~~~~~~~~~~~~~i~l-~~g~~~L~ILven~Grv 551 (850)
..|++.+-...++-||||+++|..... ..+. +.+ ..|.++|.+ +...|+.
T Consensus 34 l~l~a~~~~~~~~W~vdg~~~g~~~~~---~~~~----~~~~~~G~h~l~v-vD~~G~~ 84 (89)
T PF06832_consen 34 LVLKAAGGRGPVYWFVDGEPLGTTQPG---HQLF----WQPDRPGEHTLTV-VDAQGRS 84 (89)
T ss_pred EEEEEeCCCCcEEEEECCEEcccCCCC---CeEE----eCCCCCeeEEEEE-EcCCCCE
Confidence 355655556699999999999886432 1222 234 678888877 6666653
No 116
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=57.64 E-value=4.3 Score=43.19 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=43.3
Q ss_pred HHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEEEe
Q 003076 61 EDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (850)
Q Consensus 61 ~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vilr 116 (850)
-...+++.++|-+.|.+.++|....+..-.+... ++.++.+.|++.||+||+.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEE
Confidence 4568889999999999999997765554444444 8999999999999999999
No 117
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=57.42 E-value=33 Score=38.86 Aligned_cols=76 Identities=21% Similarity=0.371 Sum_probs=59.0
Q ss_pred cEEECCeEeEEEEEEecCCCC-CHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeec--cchHHHHHHHHHHcCc
Q 003076 35 AILINGQRRILISGSIHYPRS-TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEG--SYDLVRFIKTVQRVGL 111 (850)
Q Consensus 35 ~~~idG~p~~~~sG~~Hy~r~-~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g--~~dl~~fl~la~~~gL 111 (850)
.+.+.|.+++++.| +--+ .++.-.+.-+.+|++|.+.++.|+|- |+---|.|.| ..-|.-+.+.|++.||
T Consensus 86 ~~~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G~g~~gL~~L~~~~~~~Gl 158 (335)
T PRK08673 86 DVEIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQGLGEEGLKLLAEAREETGL 158 (335)
T ss_pred CEEECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEec----CCCCCcccccccHHHHHHHHHHHHHcCC
Confidence 36777888888988 4444 67778888899999999999999995 4433367775 4567777778999999
Q ss_pred EEEEec
Q 003076 112 YAHLRI 117 (850)
Q Consensus 112 ~vilrp 117 (850)
.++-.|
T Consensus 159 ~v~tev 164 (335)
T PRK08673 159 PIVTEV 164 (335)
T ss_pred cEEEee
Confidence 988775
No 118
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=57.33 E-value=21 Score=38.49 Aligned_cols=53 Identities=11% Similarity=0.330 Sum_probs=43.9
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEEEecCc
Q 003076 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (850)
Q Consensus 57 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vilrpGP 119 (850)
....++.++..|+.||++|++ ..|..+++ ..+..++|+.++++||+|+--.|.
T Consensus 70 q~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 70 KGKFDEYLNECDELGFEAVEI---------SDGSMEIS-LEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred hhhHHHHHHHHHHcCCCEEEE---------cCCccCCC-HHHHHHHHHHHHhCCCeEeccccc
Confidence 366778888999999999987 56766665 347889999999999999988773
No 119
>PLN00196 alpha-amylase; Provisional
Probab=56.93 E-value=22 Score=41.60 Aligned_cols=57 Identities=14% Similarity=0.167 Sum_probs=40.7
Q ss_pred HHHHHHHHHCCCCEEEEc-ccCCc--cCCCCce-eee-----eccchHHHHHHHHHHcCcEEEEec
Q 003076 61 EDLIRKAKDGGLDVIDTY-VFWNG--HEPSPGH-YNF-----EGSYDLVRFIKTVQRVGLYAHLRI 117 (850)
Q Consensus 61 ~~~l~k~ka~G~NtV~~y-v~Wn~--hEp~~G~-fdF-----~g~~dl~~fl~la~~~gL~vilrp 117 (850)
.+.|.-+|++|+++|-+. ++-+. |--.+.. |+. ....+|+++++.|+++||+||+-.
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 467888999999999874 44321 2222322 333 334699999999999999999885
No 120
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=56.69 E-value=22 Score=43.36 Aligned_cols=58 Identities=19% Similarity=0.313 Sum_probs=41.7
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE-ccc-------CCccC-----CCCceeeeeccchHHHHHHHHHHcCcEEEEe
Q 003076 56 TPEMWEDLIRKAKDGGLDVIDT-YVF-------WNGHE-----PSPGHYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (850)
Q Consensus 56 ~~~~W~~~l~k~ka~G~NtV~~-yv~-------Wn~hE-----p~~G~fdF~g~~dl~~fl~la~~~gL~vilr 116 (850)
..+.=.+.|.-+|+||+++|+. +|. |.+-- |.. .|....||.+|||.|+++||-|||-
T Consensus 163 ~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~s---ryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 163 YFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTS---RYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccc---cCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 4555677899999999999996 332 43211 110 1233469999999999999999997
No 121
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=55.64 E-value=25 Score=39.65 Aligned_cols=73 Identities=11% Similarity=0.175 Sum_probs=56.1
Q ss_pred ecCCCC---CHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccc--hH--HHHHHHHHHcCcEEEEecCceec
Q 003076 50 IHYPRS---TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSY--DL--VRFIKTVQRVGLYAHLRIGPYVC 122 (850)
Q Consensus 50 ~Hy~r~---~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~--dl--~~fl~la~~~gL~vilrpGPyic 122 (850)
+|.+|. ..+..++.++++++.||..=.+.+=+..+.. .+.|+|+..+ |. .++++..++.|++|++..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~-~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMDR-RRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECcccccC-ccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 455564 6788999999999999987666654444433 4677776543 77 99999999999999999888886
Q ss_pred c
Q 003076 123 A 123 (850)
Q Consensus 123 a 123 (850)
-
T Consensus 92 ~ 92 (339)
T cd06602 92 A 92 (339)
T ss_pred c
Confidence 4
No 122
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=55.36 E-value=24 Score=44.64 Aligned_cols=62 Identities=21% Similarity=0.220 Sum_probs=46.5
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEE-cccCCccCCCCc------eee-------eeccchHHHHHHHHHHcCcEEEEecCce
Q 003076 55 STPEMWEDLIRKAKDGGLDVIDT-YVFWNGHEPSPG------HYN-------FEGSYDLVRFIKTVQRVGLYAHLRIGPY 120 (850)
Q Consensus 55 ~~~~~W~~~l~k~ka~G~NtV~~-yv~Wn~hEp~~G------~fd-------F~g~~dl~~fl~la~~~gL~vilrpGPy 120 (850)
.+-+.|.+.|.-++++|+|+|-. +++= ..+| ..| |.+..++.+|++.|+++||.|||-.=|-
T Consensus 17 ~tf~~~~~~l~YL~~LGis~IyLsPi~~----a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~N 92 (879)
T PRK14511 17 FTFDDAAELVPYFADLGVSHLYLSPILA----ARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPN 92 (879)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECcCcc----CCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 35567999999999999999986 4431 1122 112 3466799999999999999999987543
No 123
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=54.95 E-value=29 Score=38.71 Aligned_cols=67 Identities=12% Similarity=0.169 Sum_probs=50.0
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCccCC-----CCceeeeecc--chHHHHHHHHHHcCcEEEEecCceec
Q 003076 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-----SPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVC 122 (850)
Q Consensus 56 ~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp-----~~G~fdF~g~--~dl~~fl~la~~~gL~vilrpGPyic 122 (850)
..+..++.++++++.||-.=.+.+-+..+.. .-|.|+|+-. -|..++++..+++|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 5777899999999999876666554333332 2356776643 38999999999999999998767664
No 124
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=54.56 E-value=24 Score=47.75 Aligned_cols=60 Identities=23% Similarity=0.336 Sum_probs=46.5
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE-cccCCccCCCCce---ee----------eeccchHHHHHHHHHHcCcEEEEecCc
Q 003076 56 TPEMWEDLIRKAKDGGLDVIDT-YVFWNGHEPSPGH---YN----------FEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (850)
Q Consensus 56 ~~~~W~~~l~k~ka~G~NtV~~-yv~Wn~hEp~~G~---fd----------F~g~~dl~~fl~la~~~gL~vilrpGP 119 (850)
+-+.|.+.|.-+|++|+|+|-. ++| +..+|. || |.+..++.+|++.|+++||.|||-.=|
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~----~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPIL----KARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCc----CCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 6778999999999999999986 444 222221 22 456679999999999999999988644
No 125
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=54.11 E-value=30 Score=38.27 Aligned_cols=62 Identities=24% Similarity=0.251 Sum_probs=40.7
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEccc---CCccCCCCceeee-e----ccchHHHHHHHHHHcCcEEEEec
Q 003076 56 TPEMWEDLIRKAKDGGLDVIDTYVF---WNGHEPSPGHYNF-E----GSYDLVRFIKTVQRVGLYAHLRI 117 (850)
Q Consensus 56 ~~~~W~~~l~k~ka~G~NtV~~yv~---Wn~hEp~~G~fdF-~----g~~dl~~fl~la~~~gL~vilrp 117 (850)
.+..-.++++.+|..|+|++-.=+= =++.-|....+.= . .-.|+..||+.|+|.|||+|.|+
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f~Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKFKDIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhccccccccHHHHHHHHhcCeEEEEEE
Confidence 4556678999999999999864221 1111111111110 0 01389999999999999999996
No 126
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=53.61 E-value=30 Score=39.01 Aligned_cols=74 Identities=8% Similarity=0.030 Sum_probs=55.6
Q ss_pred ecCCCC---CHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeecc--chHHHHHHHHHHcCcEEEEecCceeccc
Q 003076 50 IHYPRS---TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVCAE 124 (850)
Q Consensus 50 ~Hy~r~---~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~--~dl~~fl~la~~~gL~vilrpGPyicaE 124 (850)
+|..|. ..++-++.++++++.||..=.+.+-+.. ....+.|+|+-. -|..+|++..++.|++|++..=|+|+.+
T Consensus 13 ~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 13 YHQCRWNYKDQEDVKEVDAGFDEHDIPYDVIWLDIEH-TDGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCceEEEEChHH-hCCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 455553 6777889999999999987666554332 234566777643 3899999999999999999998888753
No 127
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=53.58 E-value=11 Score=32.13 Aligned_cols=47 Identities=23% Similarity=0.480 Sum_probs=28.0
Q ss_pred eeeeCCcccEEEEEECCEEEEEEEcccccceeEEeecccccCCCCeEEEEEecCCcccc
Q 003076 495 TLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNV 553 (850)
Q Consensus 495 ~L~v~~~~D~a~VfVng~~vG~~~~~~~~~~~~~~~~i~l~~g~~~L~ILven~GrvNy 553 (850)
.|.|...-.-|.|||||+++|... ..+. .+..|.++|.| +.-|...+
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~tp-------~~~~---~l~~G~~~v~v--~~~Gy~~~ 49 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGTTP-------LTLK---DLPPGEHTVTV--EKPGYEPY 49 (71)
T ss_pred EEEEEEECCCCEEEECCEEeccCc-------ceee---ecCCccEEEEE--EECCCeeE
Confidence 456666556689999999999431 1121 25567665544 55554433
No 128
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=53.36 E-value=63 Score=32.46 Aligned_cols=103 Identities=17% Similarity=0.161 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHCCCCEEEEccc--CCccC-----CCCceeeeeccchHHHHHHHHHHcCcEEE-EecCceeccccCCCC
Q 003076 58 EMWEDLIRKAKDGGLDVIDTYVF--WNGHE-----PSPGHYNFEGSYDLVRFIKTVQRVGLYAH-LRIGPYVCAEWNFGG 129 (850)
Q Consensus 58 ~~W~~~l~k~ka~G~NtV~~yv~--Wn~hE-----p~~G~fdF~g~~dl~~fl~la~~~gL~vi-lrpGPyicaEw~~GG 129 (850)
+.-++..+.+++.|+..+....+ |.... +.+. .-.....+.+.+++|++.|...+ +.+|.
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~i~~a~~lg~~~i~~~~g~---------- 94 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE--REEALEYLKKAIDLAKRLGAKYIVVHSGR---------- 94 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH--HHHHHHHHHHHHHHHHHHTBSEEEEECTT----------
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchh--hHHHHHHHHHHHHHHHHhCCCceeecCcc----------
Confidence 45667788899999997765444 44321 1111 11123479999999999999855 55442
Q ss_pred CCcccccCCCeEeecCChhhHHHHHHHHHHHHHHHhccccccccCCceEEeccccccCCC
Q 003076 130 FPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPE 189 (850)
Q Consensus 130 ~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~ 189 (850)
|-.. + ......-++.+.+.+++|+++.++++ +.+-+||..+..
T Consensus 95 ---~~~~-~----~~~~~~~~~~~~~~l~~l~~~a~~~g---------v~i~lE~~~~~~ 137 (213)
T PF01261_consen 95 ---YPSG-P----EDDTEENWERLAENLRELAEIAEEYG---------VRIALENHPGPF 137 (213)
T ss_dssp ---ESSS-T----TSSHHHHHHHHHHHHHHHHHHHHHHT---------SEEEEE-SSSSS
T ss_pred ---cccc-c----CCCHHHHHHHHHHHHHHHHhhhhhhc---------ceEEEecccCcc
Confidence 1000 0 11123456777778888888888432 346689988764
No 129
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=53.26 E-value=68 Score=35.63 Aligned_cols=60 Identities=17% Similarity=0.156 Sum_probs=44.8
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEccc----CCcc-CC--CCceeeeeccchHHHHHHHHHHcCcEEEEecC
Q 003076 56 TPEMWEDLIRKAKDGGLDVIDTYVF----WNGH-EP--SPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (850)
Q Consensus 56 ~~~~W~~~l~k~ka~G~NtV~~yv~----Wn~h-Ep--~~G~fdF~g~~dl~~fl~la~~~gL~vilrpG 118 (850)
+.++-++.++.|...|+|.+..|+- +.-+ |- .+|.|.= .++.++++.|+++|+.||--+=
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~---~ei~ei~~yA~~~gI~vIPeid 81 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTK---EEIREIDDYAAELGIEVIPLIQ 81 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCH---HHHHHHHHHHHHcCCEEEecCC
Confidence 5677889999999999999998753 3221 11 1344433 4999999999999999997653
No 130
>PRK03705 glycogen debranching enzyme; Provisional
Probab=52.93 E-value=21 Score=44.05 Aligned_cols=55 Identities=22% Similarity=0.359 Sum_probs=37.2
Q ss_pred HHHHHHHCCCCEEEE-cccCCccCCCC---c-----eee----------eec-----cchHHHHHHHHHHcCcEEEEec
Q 003076 63 LIRKAKDGGLDVIDT-YVFWNGHEPSP---G-----HYN----------FEG-----SYDLVRFIKTVQRVGLYAHLRI 117 (850)
Q Consensus 63 ~l~k~ka~G~NtV~~-yv~Wn~hEp~~---G-----~fd----------F~g-----~~dl~~fl~la~~~gL~vilrp 117 (850)
.|.-+|++|+|+|+. +|+=...++.. | -|| |.. ..+|+++++.|+++||.|||-.
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 488999999999996 55422212110 1 011 221 1479999999999999999984
No 131
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=51.51 E-value=32 Score=38.42 Aligned_cols=72 Identities=8% Similarity=0.110 Sum_probs=53.7
Q ss_pred ecCCCC---CHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeecc--chHHHHHHHHHHcCcEEEEecCceec
Q 003076 50 IHYPRS---TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVC 122 (850)
Q Consensus 50 ~Hy~r~---~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~--~dl~~fl~la~~~gL~vilrpGPyic 122 (850)
+|..|. ..+..++.++++++.+|-.=.+.+-+.... .-+.|+|+.. -|..+|++..++.|++|++..=|+|.
T Consensus 13 ~~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~ 89 (317)
T cd06600 13 YHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIR 89 (317)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeecccc
Confidence 455554 677889999999999987666554433322 3466777643 38999999999999999998877775
No 132
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=51.32 E-value=23 Score=46.07 Aligned_cols=21 Identities=14% Similarity=0.365 Sum_probs=19.5
Q ss_pred chHHHHHHHHHHcCcEEEEec
Q 003076 97 YDLVRFIKTVQRVGLYAHLRI 117 (850)
Q Consensus 97 ~dl~~fl~la~~~gL~vilrp 117 (850)
.+|.++++.|+++||.|||-.
T Consensus 555 ~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 589999999999999999985
No 133
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=49.73 E-value=83 Score=35.58 Aligned_cols=72 Identities=13% Similarity=0.164 Sum_probs=57.1
Q ss_pred ecCCCC---CHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeecc--chHHHHHHHHHHcCcEEEEecCceec
Q 003076 50 IHYPRS---TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVC 122 (850)
Q Consensus 50 ~Hy~r~---~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~--~dl~~fl~la~~~gL~vilrpGPyic 122 (850)
+|.+|. ..++.++.++++++.+|-.=.+++=|..+. .-+.|.|+.. -|..++++..++.|+++++..=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 565664 778899999999999987766666665554 3467777654 38899999999999999998888887
No 134
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=49.39 E-value=45 Score=37.22 Aligned_cols=66 Identities=14% Similarity=0.123 Sum_probs=48.3
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCccCC---CCceeeeecc--chHHHHHHHHHHcCcEEEEecCceec
Q 003076 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEP---SPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVC 122 (850)
Q Consensus 57 ~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp---~~G~fdF~g~--~dl~~fl~la~~~gL~vilrpGPyic 122 (850)
.+.-++.++++++.||-.=.+.+-+....- ....|+|+.. -|..++++..+++|++|++..=|+|+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 567788999999999987666554332221 1234666533 38999999999999999999877774
No 135
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=49.19 E-value=37 Score=38.28 Aligned_cols=72 Identities=22% Similarity=0.246 Sum_probs=56.0
Q ss_pred EEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCce-eeeeccchHHHHHHHHHHcCcEEEEecCceeccc
Q 003076 46 ISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGH-YNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAE 124 (850)
Q Consensus 46 ~sG~~Hy~r~~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~-fdF~g~~dl~~fl~la~~~gL~vilrpGPyicaE 124 (850)
++=++.+.|.+.+.=...|++|...|+..|=| .+|.|.+.. --|. -+.++++.|++.||+||+-.-|-|.-|
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFt----sl~~~~~~~~~~~~---~~~ell~~Anklg~~vivDvnPsil~~ 76 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFT----SLLIPEEDAELYFH---RFKELLKEANKLGLRVIVDVNPSILKE 76 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccceee----ecccCCchHHHHHH---HHHHHHHHHHhcCcEEEEEcCHHHHhh
Confidence 45577788888888788999999999987655 677776552 1122 678899999999999999988876544
No 136
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=49.00 E-value=28 Score=44.41 Aligned_cols=21 Identities=10% Similarity=0.412 Sum_probs=18.9
Q ss_pred chHHHHHHHHHHcCcEEEEec
Q 003076 97 YDLVRFIKTVQRVGLYAHLRI 117 (850)
Q Consensus 97 ~dl~~fl~la~~~gL~vilrp 117 (850)
.+++++++.|+++||.|||-.
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 479999999999999999874
No 137
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=48.97 E-value=41 Score=37.90 Aligned_cols=73 Identities=14% Similarity=0.145 Sum_probs=53.6
Q ss_pred ecCCCC---CHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeecc--chHHHHHHHHHHcCcEEEEecCceecc
Q 003076 50 IHYPRS---TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVCA 123 (850)
Q Consensus 50 ~Hy~r~---~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~--~dl~~fl~la~~~gL~vilrpGPyica 123 (850)
+|..|. ..+..++.++++++.||-.=.+.+-+.... .-+.|+|+.. -|..++++..+++|+++++..=|+|+.
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~ 90 (339)
T cd06604 13 YQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKV 90 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeC
Confidence 455553 677789999999999987655544433332 3455777643 378999999999999999988787753
No 138
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=48.74 E-value=32 Score=39.91 Aligned_cols=70 Identities=13% Similarity=0.282 Sum_probs=48.8
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeecc--chHHHHHHHHHHcCcEEEEecCceeccccC
Q 003076 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVCAEWN 126 (850)
Q Consensus 56 ~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~--~dl~~fl~la~~~gL~vilrpGPyicaEw~ 126 (850)
..+..++.++.+++.|+-.=...+-..... ..+.|.|+.. -|...+++.+++.|+++++..=|+|.-+-.
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~ 112 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSP 112 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTT
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCC
Confidence 577789999999999998776655533333 4556666543 289999999999999999998888865543
No 139
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=48.43 E-value=41 Score=34.69 Aligned_cols=87 Identities=16% Similarity=0.340 Sum_probs=56.2
Q ss_pred EEecCCCC-----CHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeee--ec-cchHHHHHHHHHHcCcEEEEecCc
Q 003076 48 GSIHYPRS-----TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNF--EG-SYDLVRFIKTVQRVGLYAHLRIGP 119 (850)
Q Consensus 48 G~~Hy~r~-----~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF--~g-~~dl~~fl~la~~~gL~vilrpGP 119 (850)
|.+||+|. +.++.+.-++.++..++.. ...|--.|..++.+.- +- ...+.+|+++.+++|.++++-.++
T Consensus 56 G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~---~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt~~ 132 (196)
T cd06416 56 DVYFFPCINCCGSAAGQVQTFLQYLKANGIKY---GTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYSSQ 132 (196)
T ss_pred ceEEEecCCCCCCHHHHHHHHHHHHHhCCCce---eEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEcCc
Confidence 99999864 4667888888888865432 1124444543343321 11 146889999999999999999888
Q ss_pred eeccc----c---CCCCCCcccccC
Q 003076 120 YVCAE----W---NFGGFPVWLKYV 137 (850)
Q Consensus 120 yicaE----w---~~GG~P~WL~~~ 137 (850)
+--.. . ....+|.|+...
T Consensus 133 ~~w~~~~~~~~~~~~~~ypLWiA~Y 157 (196)
T cd06416 133 YDWSQIFGSSYTCNFSSLPLWYAHY 157 (196)
T ss_pred chhccccCCCcCCCcCCCceEecCC
Confidence 62211 1 145689999874
No 140
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=47.74 E-value=35 Score=38.72 Aligned_cols=116 Identities=20% Similarity=0.300 Sum_probs=68.4
Q ss_pred EEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEEEecCceeccccCCCCCCcccccCCCeEeecCChhhHHHH
Q 003076 74 VIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAM 153 (850)
Q Consensus 74 tV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~ 153 (850)
-|.+.|+|+.+--+. -=...|+.|+++|++|+-- |.-||+ +-+.|+.. + +.. ++ +..
T Consensus 32 yvD~fvywsh~~~~i---------Pp~~~idaAHknGV~Vlgt----i~~e~~--~~~~~~~~---l-L~~-~~---~~~ 88 (339)
T cd06547 32 YVDTFVYFSHSAVTI---------PPADWINAAHRNGVPVLGT----FIFEWT--GQVEWLED---F-LKK-DE---DGS 88 (339)
T ss_pred hhheeecccCccccC---------CCcHHHHHHHhcCCeEEEE----EEecCC--CchHHHHH---H-hcc-Cc---ccc
Confidence 366778888754320 0145689999999999753 234665 34456643 1 221 11 123
Q ss_pred HHHHHHHHHHHhccccccccCCceEEeccccccCCCccccCcchHHHHHHHHHHHhcC--CCCcceeee
Q 003076 154 QGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKMAVGL--DTGVPWVMC 220 (850)
Q Consensus 154 ~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~--g~~vp~~~~ 220 (850)
.++.++|+++.+.+.+ .| +.+-+||..+... ....-++|++.|++.+++. +..|-||..
T Consensus 89 ~~~a~kLv~lak~yGf----DG--w~iN~E~~~~~~~--~~~~l~~F~~~L~~~~~~~~~~~~v~WYDs 149 (339)
T cd06547 89 FPVADKLVEVAKYYGF----DG--WLINIETELGDAE--KAKRLIAFLRYLKAKLHENVPGSLVIWYDS 149 (339)
T ss_pred hHHHHHHHHHHHHhCC----Cc--eEeeeeccCCcHH--HHHHHHHHHHHHHHHHhhcCCCcEEEEEec
Confidence 5778888888885554 34 7778888873110 1124456777777777663 445557653
No 141
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=45.16 E-value=5e+02 Score=29.36 Aligned_cols=53 Identities=13% Similarity=0.256 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCce-eeeeeeecCCCCCCCCCCCcccccCcCCCCCCCCCCCCchhHHHHHHHHHHHHhhhc
Q 003076 268 HRRPVQDLAFAVARFIQKGGSF-FNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAIKLCEY 346 (850)
Q Consensus 268 ~~~~~~~~~~~~~~~l~~g~s~-~n~YM~hGGTNfG~~~G~~~~~TSYDydApl~E~G~~~t~ky~~lr~l~~~~~~~~~ 346 (850)
..++++++...+.+..++|+++ +| -+.+.+|.+..+.-..||++...++..+.
T Consensus 289 ~~ks~~~li~~l~~~vs~ngnlLLN--------------------------igP~~dG~ip~~~~~~L~e~G~Wl~~nge 342 (346)
T PF01120_consen 289 KYKSADELIDILVDSVSRNGNLLLN--------------------------IGPDPDGTIPEEQVERLREIGDWLKVNGE 342 (346)
T ss_dssp GS--HHHHHHHHHHHHTBTEEEEEE--------------------------E---TTSS--HHHHHHHHHHHHHHHHHGG
T ss_pred CcCCHHHHHHHHHHHhccCceEEEe--------------------------cCCCCCCCcCHHHHHHHHHHHHHHHhccc
Confidence 3468888988888889999884 23 22456788767778889999998876554
No 142
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=43.58 E-value=56 Score=36.96 Aligned_cols=73 Identities=12% Similarity=0.157 Sum_probs=52.0
Q ss_pred ecCCCC---CHhHHHHHHHHHHHCCCCEEEEcc----------cCCccCCC---------Cceeeeec-c--chHHHHHH
Q 003076 50 IHYPRS---TPEMWEDLIRKAKDGGLDVIDTYV----------FWNGHEPS---------PGHYNFEG-S--YDLVRFIK 104 (850)
Q Consensus 50 ~Hy~r~---~~~~W~~~l~k~ka~G~NtV~~yv----------~Wn~hEp~---------~G~fdF~g-~--~dl~~fl~ 104 (850)
+|..|. ..+.-++.++++++.||..=.+++ .|+...-. =+.++|.. . -|..++|+
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 566664 577789999999999997766544 35533221 13344432 1 27999999
Q ss_pred HHHHcCcEEEEecCceec
Q 003076 105 TVQRVGLYAHLRIGPYVC 122 (850)
Q Consensus 105 la~~~gL~vilrpGPyic 122 (850)
..++.|++|+|..=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999999888875
No 143
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=43.38 E-value=52 Score=37.11 Aligned_cols=71 Identities=15% Similarity=0.173 Sum_probs=52.4
Q ss_pred ccEEECCeEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEccc----CCccCC------CCc-----------eee
Q 003076 34 KAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVF----WNGHEP------SPG-----------HYN 92 (850)
Q Consensus 34 ~~~~idG~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~NtV~~yv~----Wn~hEp------~~G-----------~fd 92 (850)
|+|+||=.| ||+ +.+..++.|+.|...++|++..++- |.+.-+ ..| .|.
T Consensus 4 RG~mlD~aR--------~f~--~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT 73 (329)
T cd06568 4 RGLMLDVAR--------HFF--TVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYT 73 (329)
T ss_pred cceeeeccC--------CCc--CHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCC
Confidence 456666444 433 8899999999999999999998874 654321 122 333
Q ss_pred eeccchHHHHHHHHHHcCcEEEEec
Q 003076 93 FEGSYDLVRFIKTVQRVGLYAHLRI 117 (850)
Q Consensus 93 F~g~~dl~~fl~la~~~gL~vilrp 117 (850)
..|+..+++.|++.|+.||--+
T Consensus 74 ---~~di~elv~yA~~rgI~vIPEi 95 (329)
T cd06568 74 ---QEDYKDIVAYAAERHITVVPEI 95 (329)
T ss_pred ---HHHHHHHHHHHHHcCCEEEEec
Confidence 3499999999999999999764
No 144
>KOG3833 consensus Uncharacterized conserved protein, contains RtcB domain [Function unknown]
Probab=41.76 E-value=26 Score=39.02 Aligned_cols=53 Identities=25% Similarity=0.330 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcE--EE-Eec
Q 003076 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLY--AH-LRI 117 (850)
Q Consensus 59 ~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~--vi-lrp 117 (850)
.|++.+.+++..|+ +|++.-+--..|..|+.|. |+.+.+++|...||- +| |||
T Consensus 444 ~~~sV~D~L~~~~I-~iR~aSpklvmEEAPesYK-----dVtdVVdtc~~aGiskK~~klrP 499 (505)
T KOG3833|consen 444 THESVLDKLRSRGI-AIRVASPKLVMEEAPESYK-----DVTDVVDTCDAAGISKKAIKLRP 499 (505)
T ss_pred cHHHHHHHHHhCCe-EEEeCCccchhhhCchhhh-----hHHHHhhhhhhcccchhhhcccc
Confidence 39999999999998 6788888999999999986 899999999999996 44 776
No 145
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=40.81 E-value=43 Score=36.53 Aligned_cols=55 Identities=25% Similarity=0.370 Sum_probs=40.5
Q ss_pred hhhhhcCC---CCCccEEEEEEEeccCCCcccccCCCCceeeeCCcccEEEEEECCEEE
Q 003076 459 LLEQINIT---RDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFL 514 (850)
Q Consensus 459 ~mEql~~t---~d~~GYl~Y~T~i~~~~~~~~~~~g~~~~L~v~~~~D~a~VfVng~~v 514 (850)
.+-.+++- .|-+|.+||+.++.++.+.. ...+....|++.++|-+|.|+|||.-+
T Consensus 73 s~nDi~~d~~lrdfv~~~wyer~v~vpe~w~-~~~~~r~vlr~~s~H~~Aivwvng~~~ 130 (297)
T KOG2024|consen 73 SFNDIGQDWRLRDFVGLVWYERTVTVPESWT-QDLGKRVVLRIGSAHSYAIVWVNGVDA 130 (297)
T ss_pred chhccccCCccccceeeeEEEEEEEcchhhh-hhcCCeEEEEeecccceeEEEEcceee
Confidence 35555542 56789999999998764431 223455688999999999999999866
No 146
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=40.53 E-value=1.5e+02 Score=34.17 Aligned_cols=121 Identities=12% Similarity=0.113 Sum_probs=64.7
Q ss_pred CCCceeeeeccchHHHHHHHHHHcCcEEEEecCceeccccCCCCCCcccccCCCe----EeecC-ChhhHHHHHHHHHHH
Q 003076 86 PSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGI----SFRTD-NGPFKVAMQGFTQKI 160 (850)
Q Consensus 86 p~~G~fdF~g~~dl~~fl~la~~~gL~vilrpGPyicaEw~~GG~P~WL~~~p~~----~~R~~-d~~y~~~~~~~~~~l 160 (850)
+..|.|||+....=+.||+.|++.|...++-+ .--.|.||.+.-.. ...++ -+...++--.|+..+
T Consensus 93 ~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aF---------SNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~V 163 (384)
T PF14587_consen 93 PADGSYDWDADAGQRWFLKAAKERGVNIFEAF---------SNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADV 163 (384)
T ss_dssp -TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHH
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEe---------ecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHH
Confidence 46799999877777789999999999988764 12278888753211 00111 134455566777777
Q ss_pred HHHHhccccccccCCceEEeccccccCCC-------ccccC-cchHHHHHHHHHHHhcCCCCcceeeeC
Q 003076 161 VQMMKNEKLFASQGGPIILSQIENEYGPE-------SKSLG-AAGHAYVNWAAKMAVGLDTGVPWVMCK 221 (850)
Q Consensus 161 ~~~l~~~~~~~~~gGpII~~QiENEyg~~-------~~~~~-~~~~~y~~~l~~~~~~~g~~vp~~~~~ 221 (850)
+++++...+ +|=-+=-=||.... ++.+. +...+.++.|...+++.|+..-+..|+
T Consensus 164 v~~~~~~GI------~f~~IsP~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~E 226 (384)
T PF14587_consen 164 VKHYKKWGI------NFDYISPFNEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACE 226 (384)
T ss_dssp HHHHHCTT--------EEEEE--S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEE
T ss_pred HHHHHhcCC------ccceeCCcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecc
Confidence 777764333 44444445887532 01111 245678899999999999987665555
No 147
>PRK12677 xylose isomerase; Provisional
Probab=39.96 E-value=1.9e+02 Score=33.31 Aligned_cols=89 Identities=10% Similarity=0.107 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeee---ccchHHHHHHHHHHcCcEEE-EecCceeccccCCCCCCccc
Q 003076 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFE---GSYDLVRFIKTVQRVGLYAH-LRIGPYVCAEWNFGGFPVWL 134 (850)
Q Consensus 59 ~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~---g~~dl~~fl~la~~~gL~vi-lrpGPyicaEw~~GG~P~WL 134 (850)
.+++.+++++++|+..|+.. .+..--|+.+ -.+.+.++.++++++||.|. +-|.-|.+..+..|
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh------~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g------ 99 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFH------DDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDG------ 99 (384)
T ss_pred CHHHHHHHHHHhCCCEEEec------ccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCC------
Confidence 37789999999999999873 1111112111 11358899999999999977 44432211111121
Q ss_pred ccCCCeEeecCChhhHHHHHHHHHHHHHHHh
Q 003076 135 KYVPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (850)
Q Consensus 135 ~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (850)
-+-+.|+..++...+.+.+.++.-+
T Consensus 100 ------~lts~d~~~R~~Ai~~~~r~IdlA~ 124 (384)
T PRK12677 100 ------AFTSNDRDVRRYALRKVLRNIDLAA 124 (384)
T ss_pred ------cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2345567777776666776666666
No 148
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=39.66 E-value=39 Score=41.87 Aligned_cols=55 Identities=24% Similarity=0.362 Sum_probs=41.7
Q ss_pred HHHHHHHCCCCEEEE-cccCCccCCCC---c-----------------eeeeec-----cchHHHHHHHHHHcCcEEEEe
Q 003076 63 LIRKAKDGGLDVIDT-YVFWNGHEPSP---G-----------------HYNFEG-----SYDLVRFIKTVQRVGLYAHLR 116 (850)
Q Consensus 63 ~l~k~ka~G~NtV~~-yv~Wn~hEp~~---G-----------------~fdF~g-----~~dl~~fl~la~~~gL~vilr 116 (850)
.|.-+|++|+++|+. +|+.-..|+.. | .|--+. .+.++.+++.++++||-|||-
T Consensus 205 ~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 205 IIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 388999999999996 78866655543 2 232233 257899999999999999998
Q ss_pred c
Q 003076 117 I 117 (850)
Q Consensus 117 p 117 (850)
.
T Consensus 285 V 285 (697)
T COG1523 285 V 285 (697)
T ss_pred E
Confidence 4
No 149
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=39.54 E-value=99 Score=34.65 Aligned_cols=62 Identities=13% Similarity=0.145 Sum_probs=45.6
Q ss_pred cCCCCCHhHHHHHHHHHHHCCCCEEEEccc--CCc--c-CC------------------------CCceeeeeccchHHH
Q 003076 51 HYPRSTPEMWEDLIRKAKDGGLDVIDTYVF--WNG--H-EP------------------------SPGHYNFEGSYDLVR 101 (850)
Q Consensus 51 Hy~r~~~~~W~~~l~k~ka~G~NtV~~yv~--Wn~--h-Ep------------------------~~G~fdF~g~~dl~~ 101 (850)
||+ +.+..++.|+.|...++|++..++- |.+ . .| ..|.|. ..++..
T Consensus 12 ~~~--~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT---~~di~e 86 (326)
T cd06564 12 KYY--SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYT---KEEFKE 86 (326)
T ss_pred CCC--CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCccc---HHHHHH
Confidence 553 7899999999999999999997543 322 1 11 122333 249999
Q ss_pred HHHHHHHcCcEEEEec
Q 003076 102 FIKTVQRVGLYAHLRI 117 (850)
Q Consensus 102 fl~la~~~gL~vilrp 117 (850)
+++.|+++|+.||--+
T Consensus 87 iv~yA~~rgI~vIPEI 102 (326)
T cd06564 87 LIAYAKDRGVNIIPEI 102 (326)
T ss_pred HHHHHHHcCCeEeccC
Confidence 9999999999998654
No 150
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=39.34 E-value=1.2e+02 Score=32.53 Aligned_cols=96 Identities=7% Similarity=-0.011 Sum_probs=55.5
Q ss_pred Cceeeee-ccchHHHHHHHHHHcCcEEEEecCceeccccCCCCCCcccccCCCeEeecCChhhHHHHHHHHHHHHHHHhc
Q 003076 88 PGHYNFE-GSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKN 166 (850)
Q Consensus 88 ~G~fdF~-g~~dl~~fl~la~~~gL~vilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~ 166 (850)
.|...+. ...++..+++.|++.|++|++..|= |..+. +. .+ ..++. .-++|.+.|++.+++
T Consensus 36 ~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sigg-----~~~~~---~~----~~---~~~~~---~r~~fi~~lv~~~~~ 97 (253)
T cd06545 36 NGTLNANPVRSELNSVVNAAHAHNVKILISLAG-----GSPPE---FT----AA---LNDPA---KRKALVDKIINYVVS 97 (253)
T ss_pred CCeEEecCcHHHHHHHHHHHHhCCCEEEEEEcC-----CCCCc---ch----hh---hcCHH---HHHHHHHHHHHHHHH
Confidence 5666664 3357889999999999999999861 22211 10 01 12333 235688888888886
Q ss_pred cccccccCCceEEeccccccCCCccccCcchHHHHHHHHHHHhcCC
Q 003076 167 EKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKMAVGLD 212 (850)
Q Consensus 167 ~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g 212 (850)
+++ =++.|+=|+.... ...-..+++.|++.+.+.|
T Consensus 98 ~~~--------DGIdiDwE~~~~~---~~~~~~fv~~Lr~~l~~~~ 132 (253)
T cd06545 98 YNL--------DGIDVDLEGPDVT---FGDYLVFIRALYAALKKEG 132 (253)
T ss_pred hCC--------CceeEEeeccCcc---HhHHHHHHHHHHHHHhhcC
Confidence 544 2456666765321 1112245555666554433
No 151
>PLN02877 alpha-amylase/limit dextrinase
Probab=38.66 E-value=52 Score=42.26 Aligned_cols=21 Identities=19% Similarity=0.564 Sum_probs=19.0
Q ss_pred chHHHHHHHHHHcCcEEEEec
Q 003076 97 YDLVRFIKTVQRVGLYAHLRI 117 (850)
Q Consensus 97 ~dl~~fl~la~~~gL~vilrp 117 (850)
++++++++.|+++||.|||-.
T Consensus 466 ~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 369999999999999999974
No 152
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=37.61 E-value=1.4e+02 Score=33.90 Aligned_cols=60 Identities=15% Similarity=0.144 Sum_probs=46.1
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEccc----CCccC----------------------------CCCceeeeeccchHHHH
Q 003076 55 STPEMWEDLIRKAKDGGLDVIDTYVF----WNGHE----------------------------PSPGHYNFEGSYDLVRF 102 (850)
Q Consensus 55 ~~~~~W~~~l~k~ka~G~NtV~~yv~----Wn~hE----------------------------p~~G~fdF~g~~dl~~f 102 (850)
.+.+..++.|+.|...++|+...++- |.+-- +..|.|.- .|++.+
T Consensus 15 ~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~---~di~ei 91 (357)
T cd06563 15 FPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQ---EEIREI 91 (357)
T ss_pred cCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECH---HHHHHH
Confidence 36889999999999999999998763 43211 11244443 499999
Q ss_pred HHHHHHcCcEEEEec
Q 003076 103 IKTVQRVGLYAHLRI 117 (850)
Q Consensus 103 l~la~~~gL~vilrp 117 (850)
++.|+++|+.||--+
T Consensus 92 v~yA~~rgI~VIPEI 106 (357)
T cd06563 92 VAYAAERGITVIPEI 106 (357)
T ss_pred HHHHHHcCCEEEEec
Confidence 999999999999764
No 153
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=37.51 E-value=1.2e+02 Score=35.52 Aligned_cols=109 Identities=17% Similarity=0.305 Sum_probs=63.1
Q ss_pred cCCCC--CHhHHHHHHHHHHHCCCCEEEE-cccCCccC--C--CCceeee-----ecc-----chHHHHHHHHH-HcCcE
Q 003076 51 HYPRS--TPEMWEDLIRKAKDGGLDVIDT-YVFWNGHE--P--SPGHYNF-----EGS-----YDLVRFIKTVQ-RVGLY 112 (850)
Q Consensus 51 Hy~r~--~~~~W~~~l~k~ka~G~NtV~~-yv~Wn~hE--p--~~G~fdF-----~g~-----~dl~~fl~la~-~~gL~ 112 (850)
+.++. +-+.|+++|+.++++|+|+|.. ++----.. | ...+..| +.. .+|.++++.++ ++||.
T Consensus 13 vlsk~~G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll 92 (423)
T PF14701_consen 13 VLSKWMGPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLL 92 (423)
T ss_pred EhhhhcCCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCce
Confidence 34443 5678999999999999999974 22110000 0 0111111 111 38999999985 69999
Q ss_pred EEEecCceeccccCCCCC-CcccccCCCeEeecCChhhHHHHH---HHHHHHHHHHh
Q 003076 113 AHLRIGPYVCAEWNFGGF-PVWLKYVPGISFRTDNGPFKVAMQ---GFTQKIVQMMK 165 (850)
Q Consensus 113 vilrpGPyicaEw~~GG~-P~WL~~~p~~~~R~~d~~y~~~~~---~~~~~l~~~l~ 165 (850)
++.-. + |+.-.. =.||..+|+.-.=..+.++|+.+- +.+-++...|.
T Consensus 93 ~~~Dv---V---~NHtA~nS~Wl~eHPEagYN~~nsPHL~pA~eLD~aL~~fS~~l~ 143 (423)
T PF14701_consen 93 SMTDV---V---LNHTANNSPWLREHPEAGYNLENSPHLRPAYELDRALLEFSKDLE 143 (423)
T ss_pred EEEEE---e---eccCcCCChHHHhCcccccCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 77553 1 333222 579999998644444455555433 34444444444
No 154
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=37.32 E-value=1.1e+02 Score=33.90 Aligned_cols=60 Identities=15% Similarity=0.184 Sum_probs=47.5
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEccc----CCccCC----------------CCceeeeeccchHHHHHHHHHHcCcEEE
Q 003076 55 STPEMWEDLIRKAKDGGLDVIDTYVF----WNGHEP----------------SPGHYNFEGSYDLVRFIKTVQRVGLYAH 114 (850)
Q Consensus 55 ~~~~~W~~~l~k~ka~G~NtV~~yv~----Wn~hEp----------------~~G~fdF~g~~dl~~fl~la~~~gL~vi 114 (850)
.+.+..++.|+.|...++|++..++- |.+--+ ..|.|.-+ |+..+++.|+++|+.||
T Consensus 13 ~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~---di~elv~yA~~rgI~vi 89 (303)
T cd02742 13 LSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYA---QLKDIIEYAAARGIEVI 89 (303)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHH---HHHHHHHHHHHcCCEEE
Confidence 37888999999999999999999877 754321 12344444 99999999999999999
Q ss_pred Eec
Q 003076 115 LRI 117 (850)
Q Consensus 115 lrp 117 (850)
--+
T Consensus 90 PEi 92 (303)
T cd02742 90 PEI 92 (303)
T ss_pred Eec
Confidence 664
No 155
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=37.14 E-value=1.2e+02 Score=33.48 Aligned_cols=109 Identities=15% Similarity=0.224 Sum_probs=69.2
Q ss_pred EEEEEEecCCCCC---HhHH-HHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEEEecCc
Q 003076 44 ILISGSIHYPRST---PEMW-EDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (850)
Q Consensus 44 ~~~sG~~Hy~r~~---~~~W-~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vilrpGP 119 (850)
+-+++..|+...| .... -++|++-.++|.+.+-|-.+ ||.+ .+.+|++.|++.|+.+=+-||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~~----------Fd~~---~~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQLF----------YDVD---NFLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccce----------ecHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 5678888876632 2222 23455444699999988544 3433 6889999999997664444444
Q ss_pred eec---------cccCCCCCCcccccCCCeEeecCChhhHHHHHHHHHHHHHHHhc
Q 003076 120 YVC---------AEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKN 166 (850)
Q Consensus 120 yic---------aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~ 166 (850)
.-+ +||..--+|.|+.+.=. ....+++...+.--++..++++.+.+
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~-~~~~~~~~~~~~gi~~a~~~~~~l~~ 251 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMSRLE-PIKDDDEAVRDYGIELIVEMCQKLLA 251 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333 57877778999986200 01233355566677788888888873
No 156
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=35.46 E-value=1.9e+02 Score=32.77 Aligned_cols=63 Identities=14% Similarity=0.163 Sum_probs=46.5
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEccc----CCccCC------CCceeeee---ccchHHHHHHHHHHcCcEEEEec
Q 003076 55 STPEMWEDLIRKAKDGGLDVIDTYVF----WNGHEP------SPGHYNFE---GSYDLVRFIKTVQRVGLYAHLRI 117 (850)
Q Consensus 55 ~~~~~W~~~l~k~ka~G~NtV~~yv~----Wn~hEp------~~G~fdF~---g~~dl~~fl~la~~~gL~vilrp 117 (850)
.+.+..++.|+.|....+|+...++- |.+--+ +.|.|.=. -..|+..+++.|++.|+.||.-+
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEI 90 (348)
T cd06562 15 LSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEI 90 (348)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEec
Confidence 36889999999999999999998763 554322 12322211 12499999999999999999764
No 157
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=35.41 E-value=7.5e+02 Score=28.56 Aligned_cols=86 Identities=12% Similarity=0.191 Sum_probs=51.5
Q ss_pred HHHcCcEEEEecCceeccccCCCCCCcccccCCCe------Eeec-CChhhHHHHHHHHHHHHHHHhccccccccCCceE
Q 003076 106 VQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGI------SFRT-DNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPII 178 (850)
Q Consensus 106 a~~~gL~vilrpGPyicaEw~~GG~P~WL~~~p~~------~~R~-~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII 178 (850)
+-.+|+.|..-| |+ .|+|+...-.+ ++|- ..++|-++..+|+ ..++ .+|=|+-
T Consensus 111 ~in~g~ivfASP-------Ws---pPa~Mktt~~~ngg~~g~Lk~e~Ya~yA~~l~~fv----~~m~------~nGvnly 170 (433)
T COG5520 111 AINPGMIVFASP-------WS---PPASMKTTNNRNGGNAGRLKYEKYADYADYLNDFV----LEMK------NNGVNLY 170 (433)
T ss_pred hcCCCcEEEecC-------CC---CchhhhhccCcCCccccccchhHhHHHHHHHHHHH----HHHH------hCCCcee
Confidence 566899998887 63 79999863221 3432 2445544444443 3344 3566898
Q ss_pred EeccccccCCCccccCc---chHHHHHHHHHHHhcCC
Q 003076 179 LSQIENEYGPESKSLGA---AGHAYVNWAAKMAVGLD 212 (850)
Q Consensus 179 ~~QiENEyg~~~~~~~~---~~~~y~~~l~~~~~~~g 212 (850)
++-|.||..... .|+. ...+.++.+++-++...
T Consensus 171 alSVQNEPd~~p-~~d~~~wtpQe~~rF~~qyl~si~ 206 (433)
T COG5520 171 ALSVQNEPDYAP-TYDWCWWTPQEELRFMRQYLASIN 206 (433)
T ss_pred EEeeccCCcccC-CCCcccccHHHHHHHHHHhhhhhc
Confidence 888999986532 2222 34566666676665544
No 158
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=35.16 E-value=65 Score=34.99 Aligned_cols=49 Identities=20% Similarity=0.245 Sum_probs=36.0
Q ss_pred HHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEEEecC
Q 003076 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (850)
Q Consensus 64 l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vilrpG 118 (850)
..++|++|++.|-+ -|..++-.|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 79 ~~mLkd~G~~~vii-----GHSERR~~f~Et-d~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 79 AEMLKDLGVKYVII-----GHSERRQYFGET-DELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred HHHHHHCCCCEEEe-----CcccccCccCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 45799999999888 576666666533 23344444559999999999988
No 159
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=34.70 E-value=70 Score=28.64 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=24.8
Q ss_pred cCCceEEeccccc-cCCCcccc----C-cchHHHHHHHHHH---HhcCCCCcceee
Q 003076 173 QGGPIILSQIENE-YGPESKSL----G-AAGHAYVNWAAKM---AVGLDTGVPWVM 219 (850)
Q Consensus 173 ~gGpII~~QiENE-yg~~~~~~----~-~~~~~y~~~l~~~---~~~~g~~vp~~~ 219 (850)
+...|.+|+|-|| .++....+ + .....|.+||+++ +|+.+...|+..
T Consensus 7 ~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~ 62 (88)
T PF12876_consen 7 YDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTS 62 (88)
T ss_dssp -GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE-
T ss_pred CCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEe
Confidence 3458999999999 55321001 1 1234566666655 456677778654
No 160
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=34.27 E-value=71 Score=34.49 Aligned_cols=49 Identities=22% Similarity=0.317 Sum_probs=39.1
Q ss_pred HHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEEEecC
Q 003076 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (850)
Q Consensus 64 l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vilrpG 118 (850)
..++|++|++.|-+ -|..++--|.-+ +.++.+=++.|.++||.+|++.|
T Consensus 77 ~~mL~d~G~~~vii-----GHSERR~~f~Et-~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 77 AEMLKDAGAKYVII-----GHSERRQYFGET-DEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred HHHHHHcCCCEEEe-----CcccccCcCCCC-cHHHHHHHHHHHHCCCEEEEEeC
Confidence 34799999998887 566665555433 56888889999999999999987
No 161
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=34.00 E-value=15 Score=32.69 Aligned_cols=37 Identities=22% Similarity=0.600 Sum_probs=27.7
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHc
Q 003076 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRV 109 (850)
Q Consensus 56 ~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~ 109 (850)
....|-.-+|.+-. .||.|-.|||. +|++||++|.|-
T Consensus 20 s~hhWLNflQaAyR--------------L~PgPS~~DF~---qLr~flk~alkT 56 (92)
T PF02228_consen 20 STHHWLNFLQAAYR--------------LQPGPSSFDFH---QLRNFLKLALKT 56 (92)
T ss_dssp THHHHHHHHHHHHH--------------SS---STTTHH---HHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHh--------------cCCCCCcccHH---HHHHHHHHHHcC
Confidence 56679888887654 58999999999 899999999874
No 162
>PRK09267 flavodoxin FldA; Validated
Probab=33.99 E-value=2.7e+02 Score=27.67 Aligned_cols=74 Identities=8% Similarity=0.016 Sum_probs=48.9
Q ss_pred ECCeEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEE
Q 003076 38 INGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH 114 (850)
Q Consensus 38 idG~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vi 114 (850)
++.-..++++...|+...++..|.+-+.+++...++-..+.+|= ......-.-.|. .-+..+-+++++.|..++
T Consensus 44 l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaifg-~g~~~~~~~~~~--~~~~~l~~~l~~~g~~~v 117 (169)
T PRK09267 44 FEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALFG-LGDQEDYAEYFC--DAMGTLYDIVEPRGATIV 117 (169)
T ss_pred HhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEEe-cCCCCcchHHHH--HHHHHHHHHHHHCCCEEE
Confidence 44566789999999877778889988888887777777777763 221111001121 235667777888897655
No 163
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=33.77 E-value=61 Score=37.73 Aligned_cols=56 Identities=20% Similarity=0.317 Sum_probs=40.1
Q ss_pred HHHHHHHHCCCCEEEE-cccC---CccCCCCcee-----eeeccchHHHHHHHHHHcCcEEEEec
Q 003076 62 DLIRKAKDGGLDVIDT-YVFW---NGHEPSPGHY-----NFEGSYDLVRFIKTVQRVGLYAHLRI 117 (850)
Q Consensus 62 ~~l~k~ka~G~NtV~~-yv~W---n~hEp~~G~f-----dF~g~~dl~~fl~la~~~gL~vilrp 117 (850)
+.|.-+|++|+++|-+ +++= ..|--..-.| .|.+..|+.++++.|++.||+||+-.
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 7888999999999964 3331 1222111000 46677899999999999999999873
No 164
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=32.91 E-value=3e+02 Score=29.16 Aligned_cols=50 Identities=22% Similarity=0.355 Sum_probs=33.6
Q ss_pred CCCCCHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEE
Q 003076 52 YPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH 114 (850)
Q Consensus 52 y~r~~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vi 114 (850)
.++.+++ .++.|+++|++.+.+- |=| .|||. ..-|.+.++.+++.|+..+
T Consensus 58 ~f~~~~~----~~~~l~~~G~d~~~la---NNH-----~fD~G-~~gl~~t~~~l~~a~i~~~ 107 (239)
T smart00854 58 NFRAPPE----NAAALKAAGFDVVSLA---NNH-----SLDYG-EEGLLDTLAALDAAGIAHV 107 (239)
T ss_pred EecCCHH----HHHHHHHhCCCEEEec---cCc-----ccccc-hHHHHHHHHHHHHCCCCEe
Confidence 3456665 5778999999998872 123 24443 3357778888888888754
No 165
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=32.80 E-value=97 Score=38.12 Aligned_cols=75 Identities=13% Similarity=0.205 Sum_probs=53.0
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE-ccc-----CC--ccCCCCceeee---------eccchHHHHHHHHHHcCcEEEEecC
Q 003076 56 TPEMWEDLIRKAKDGGLDVIDT-YVF-----WN--GHEPSPGHYNF---------EGSYDLVRFIKTVQRVGLYAHLRIG 118 (850)
Q Consensus 56 ~~~~W~~~l~k~ka~G~NtV~~-yv~-----Wn--~hEp~~G~fdF---------~g~~dl~~fl~la~~~gL~vilrpG 118 (850)
.+..|+ .++++|+++|-+ .++ |. +.--..|-||- ....|++++++.|+++||+||+-.=
T Consensus 76 ~~~~wd----yL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 76 DDALWK----ALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred ChHHHH----HHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 566775 688899999986 343 43 22223566663 2346999999999999999997542
Q ss_pred --------ceeccccCCCCCCccc
Q 003076 119 --------PYVCAEWNFGGFPVWL 134 (850)
Q Consensus 119 --------PyicaEw~~GG~P~WL 134 (850)
||.-||++.+-+|.|.
T Consensus 152 pnHTs~ghdF~lAr~~~~~Y~g~Y 175 (688)
T TIGR02455 152 PAHTGKGADFRLAELAHGDYPGLY 175 (688)
T ss_pred CCCCCCCcchHHHhhcCCCCCCce
Confidence 3667777777777776
No 166
>PLN02784 alpha-amylase
Probab=32.66 E-value=85 Score=39.83 Aligned_cols=57 Identities=18% Similarity=0.197 Sum_probs=39.1
Q ss_pred HHHHHHHHHCCCCEEEEcccCCccCC---CCce-ee----eeccchHHHHHHHHHHcCcEEEEec
Q 003076 61 EDLIRKAKDGGLDVIDTYVFWNGHEP---SPGH-YN----FEGSYDLVRFIKTVQRVGLYAHLRI 117 (850)
Q Consensus 61 ~~~l~k~ka~G~NtV~~yv~Wn~hEp---~~G~-fd----F~g~~dl~~fl~la~~~gL~vilrp 117 (850)
.++|..++++|+++|-+.=+..-..+ .+.. |+ |....+|..+++.|+++||+||+-.
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 55778899999999997533221111 1111 22 2234699999999999999999874
No 167
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=32.23 E-value=1.4e+02 Score=34.27 Aligned_cols=53 Identities=15% Similarity=0.255 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEEEec
Q 003076 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (850)
Q Consensus 59 ~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vilrp 117 (850)
.|..-|+++++.|++.|..+...-.-....+. + -...+++.|+++||.|+.+.
T Consensus 246 ~~~~~l~~i~a~~a~~i~P~~~~l~~~~~~~~--~----~~~~~v~~Ah~~GL~V~~WT 298 (356)
T cd08560 246 TWSPSMDELKARGVNIIAPPIWMLVDPDENGK--I----VPSEYAKAAKAAGLDIITWT 298 (356)
T ss_pred cHHHHHHHHHhCCccEecCchhhccccccccc--c----CCHHHHHHHHHcCCEEEEEE
Confidence 48888999999999987765433222211122 2 24688999999999999774
No 168
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=32.20 E-value=1e+02 Score=34.61 Aligned_cols=60 Identities=10% Similarity=0.091 Sum_probs=46.8
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcc----cCCccC---C---CCc----eeeeeccchHHHHHHHHHHcCcEEEEec
Q 003076 55 STPEMWEDLIRKAKDGGLDVIDTYV----FWNGHE---P---SPG----HYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (850)
Q Consensus 55 ~~~~~W~~~l~k~ka~G~NtV~~yv----~Wn~hE---p---~~G----~fdF~g~~dl~~fl~la~~~gL~vilrp 117 (850)
.+.+..++.|+.|...++|+...++ -|.+-- | +.| .|. ..|+..+++.|++.|+.||--+
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT---~~di~elv~yA~~rgI~vIPEI 88 (311)
T cd06570 15 IPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYT---QEQIREVVAYARDRGIRVVPEI 88 (311)
T ss_pred cCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccC---HHHHHHHHHHHHHcCCEEEEee
Confidence 4689999999999999999999987 475421 1 122 333 3499999999999999999764
No 169
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=31.80 E-value=1.3e+02 Score=32.77 Aligned_cols=82 Identities=21% Similarity=0.297 Sum_probs=58.0
Q ss_pred eeEEEecccEEECCeEeEEEEEEecCCCC-CHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeee--ccchHHHHH
Q 003076 27 STVTYDRKAILINGQRRILISGSIHYPRS-TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFE--GSYDLVRFI 103 (850)
Q Consensus 27 ~~v~~~~~~~~idG~p~~~~sG~~Hy~r~-~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~--g~~dl~~fl 103 (850)
..|.+. .+.+.+..+++++| +-.+ ..+.-.+..+.+|++|......|+|=+...| +.|. |..-|..+-
T Consensus 12 s~i~~~--~~~~g~~~~~~IAG---pc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp----~s~~g~g~~gl~~l~ 82 (260)
T TIGR01361 12 TVVDVG--GVKIGEGSPIVIAG---PCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSP----YSFQGLGEEGLKLLR 82 (260)
T ss_pred CEEEEC--CEEEcCCcEEEEEe---CCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCC----ccccccHHHHHHHHH
Confidence 335553 35566555667877 4444 6677778888999999998888888754444 3455 356788888
Q ss_pred HHHHHcCcEEEEec
Q 003076 104 KTVQRVGLYAHLRI 117 (850)
Q Consensus 104 ~la~~~gL~vilrp 117 (850)
+.|++.||.++-.|
T Consensus 83 ~~~~~~Gl~~~t~~ 96 (260)
T TIGR01361 83 RAADEHGLPVVTEV 96 (260)
T ss_pred HHHHHhCCCEEEee
Confidence 88999999988875
No 170
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=31.72 E-value=1.7e+02 Score=27.80 Aligned_cols=70 Identities=16% Similarity=0.323 Sum_probs=41.4
Q ss_pred EEEEEEEeccCCCcccccCCCCceeeeCCcccEEEEEECCEEEEEEEcccc-----cceeEEeecccccCC-CCeEEEEE
Q 003076 472 YLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRE-----NRRFTFSGPANLRAG-INKIALLS 545 (850)
Q Consensus 472 Yl~Y~T~i~~~~~~~~~~~g~~~~L~v~~~~D~a~VfVng~~vG~~~~~~~-----~~~~~~~~~i~l~~g-~~~L~ILv 545 (850)
.+.++..|..+.++.+ ++.+. ..|.+.++|||+.+-...+... .........+.+.+| .+.|.|+.
T Consensus 47 ~~~~~G~~~~~~~G~y-------~f~~~-~~d~~~l~idg~~vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y 118 (145)
T PF07691_consen 47 SVRWTGYFKPPETGTY-------TFSLT-SDDGARLWIDGKLVIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEY 118 (145)
T ss_dssp EEEEEEEEEESSSEEE-------EEEEE-ESSEEEEEETTEEEEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEE
T ss_pred EEEEEEEEecccCceE-------EEEEE-ecccEEEEECCEEEEcCCccccccccccccceEEEEEEeeCCeeEEEEEEE
Confidence 4567777877666532 34444 6789999999999966653211 001222334556665 57787766
Q ss_pred ecCC
Q 003076 546 IAVG 549 (850)
Q Consensus 546 en~G 549 (850)
.+.+
T Consensus 119 ~~~~ 122 (145)
T PF07691_consen 119 FNRG 122 (145)
T ss_dssp EECS
T ss_pred EECC
Confidence 5544
No 171
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=31.37 E-value=2.4e+02 Score=30.40 Aligned_cols=105 Identities=11% Similarity=0.064 Sum_probs=57.5
Q ss_pred CCCHhHHHHHHHHHHHCCCCEEEEc--ccC--CccCCCCceeeeeccchHHHHHHHHHHcCcEEEEecCceeccccCCCC
Q 003076 54 RSTPEMWEDLIRKAKDGGLDVIDTY--VFW--NGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGG 129 (850)
Q Consensus 54 r~~~~~W~~~l~k~ka~G~NtV~~y--v~W--n~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vilrpGPyicaEw~~GG 129 (850)
.+.++.-+...+.+++.|+....+- .+. +...+.+..-+ .....+++.|++|++.|..+|.-+|
T Consensus 53 ~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~i~~a~~lG~~~i~~~~----------- 120 (283)
T PRK13209 53 DWSREQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRA-QALEIMRKAIQLAQDLGIRVIQLAG----------- 120 (283)
T ss_pred CCCHHHHHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHH-HHHHHHHHHHHHHHHcCCCEEEECC-----------
Confidence 3467777777888889999886642 111 11111111100 0112578899999999999764321
Q ss_pred CCcccccCCCeEeecCChhhHHHHHHHHHHHHHHHhccccccccCCceEEeccccccC
Q 003076 130 FPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYG 187 (850)
Q Consensus 130 ~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg 187 (850)
.+.|.. ..++...+.+...++.|++..+++ | |-+.|||-.+
T Consensus 121 ~~~~~~--------~~~~~~~~~~~~~l~~l~~~A~~~-------G--V~i~iE~~~~ 161 (283)
T PRK13209 121 YDVYYE--------QANNETRRRFIDGLKESVELASRA-------S--VTLAFEIMDT 161 (283)
T ss_pred cccccc--------ccHHHHHHHHHHHHHHHHHHHHHh-------C--CEEEEeecCC
Confidence 121211 112344455556677777777633 3 3456788543
No 172
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=30.48 E-value=2.1e+02 Score=31.29 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=68.3
Q ss_pred eEEEEEEecCCCCC----HhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcE--EEEe
Q 003076 43 RILISGSIHYPRST----PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLY--AHLR 116 (850)
Q Consensus 43 ~~~~sG~~Hy~r~~----~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~--vilr 116 (850)
.+-+++..|+.+.| .+.=.++|++=.++|.+.+-|=.+ ||.+ .+.+|++.|++.|+. |++-
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ~~----------fd~~---~~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQLF----------FDND---DYYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeeccc----------cCHH---HHHHHHHHHHHcCCCCCEecc
Confidence 47788888776532 222235577777899998888443 3444 788999999999765 4444
Q ss_pred cCceec-------cccCCCCCCcccccCCCeEeecCChhhHHHHHHHHHHHHHHHh
Q 003076 117 IGPYVC-------AEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (850)
Q Consensus 117 pGPyic-------aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (850)
+-|-.. .+|..-.+|.|+.+.=. +...+....+++--++..+++..+.
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~~l~-~~~~~~~~~~~~gi~~~~~~~~~l~ 246 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVKRLE-KYDDDPEEVRAVGIEYATDQCEDLI 246 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 444332 23666778999976210 0112223456666777777777776
No 173
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=30.34 E-value=78 Score=34.15 Aligned_cols=40 Identities=15% Similarity=0.217 Sum_probs=32.8
Q ss_pred EECCeEeEEEEEEecCCCC-CHhHHHHHHHHHHHCCCCEEE
Q 003076 37 LINGQRRILISGSIHYPRS-TPEMWEDLIRKAKDGGLDVID 76 (850)
Q Consensus 37 ~idG~p~~~~sG~~Hy~r~-~~~~W~~~l~k~ka~G~NtV~ 76 (850)
.+.|+++..+.|.+|+... ...+-+--++-||++|+..|=
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii 87 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLI 87 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEE
Confidence 4679999999999997665 455557889999999998764
No 174
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=30.06 E-value=92 Score=35.25 Aligned_cols=43 Identities=23% Similarity=0.210 Sum_probs=28.6
Q ss_pred ecccEEECCeEeEEEEEEecCCCC-CHhHHHHHH-HHHHHCCCCEEEE
Q 003076 32 DRKAILINGQRRILISGSIHYPRS-TPEMWEDLI-RKAKDGGLDVIDT 77 (850)
Q Consensus 32 ~~~~~~idG~p~~~~sG~~Hy~r~-~~~~W~~~l-~k~ka~G~NtV~~ 77 (850)
|.+.+.|||||++++= .+..+ ....+-+.+ +.+|++|+.-+-+
T Consensus 150 D~rYikVdGKPv~~Iy---~p~~~pd~~~~~~~wr~~a~~~G~~giyi 194 (345)
T PF14307_consen 150 DPRYIKVDGKPVFLIY---RPGDIPDIKEMIERWREEAKEAGLPGIYI 194 (345)
T ss_pred CCCceeECCEEEEEEE---CcccccCHHHHHHHHHHHHHHcCCCceEE
Confidence 7889999999999983 33322 222333333 4678899986654
No 175
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=29.62 E-value=75 Score=34.63 Aligned_cols=52 Identities=17% Similarity=0.209 Sum_probs=34.3
Q ss_pred HHHHHHHHHCCCCEEEEcccCC--ccCCCCceeeeeccchHHHHHHHHHHcCcEEEE
Q 003076 61 EDLIRKAKDGGLDVIDTYVFWN--GHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHL 115 (850)
Q Consensus 61 ~~~l~k~ka~G~NtV~~yv~Wn--~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vil 115 (850)
++.+++||++|++.|...+--+ .++..-+..+|+ +..+.++.++++|+.|..
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~ 176 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCS 176 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEE
Confidence 4678899999999988765411 112111223444 566778999999998653
No 176
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=29.52 E-value=1.2e+02 Score=33.54 Aligned_cols=61 Identities=20% Similarity=0.269 Sum_probs=43.5
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCccCC--CCceeeeeccchHHHHHHHHHHcCcEEEEec
Q 003076 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP--SPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (850)
Q Consensus 56 ~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp--~~G~fdF~g~~dl~~fl~la~~~gL~vilrp 117 (850)
.++..++.++.+++.|.+.|-+|.-+..-.+ .++.-.++ ...+.+++++|+++|+.|.+-.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~-~e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFS-EEELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcC-HHHHHHHHHHHHHcCCEEEEEe
Confidence 4788999999999999999999875422111 12211222 2378999999999999887663
No 177
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=29.48 E-value=1.8e+02 Score=30.76 Aligned_cols=126 Identities=16% Similarity=0.150 Sum_probs=72.5
Q ss_pred CHhHHHHHHHHHHHCCCCE-EEE--cccCCccCC---CCc--eeeee-----------c--cchHHHHHHHHHHcCcEEE
Q 003076 56 TPEMWEDLIRKAKDGGLDV-IDT--YVFWNGHEP---SPG--HYNFE-----------G--SYDLVRFIKTVQRVGLYAH 114 (850)
Q Consensus 56 ~~~~W~~~l~k~ka~G~Nt-V~~--yv~Wn~hEp---~~G--~fdF~-----------g--~~dl~~fl~la~~~gL~vi 114 (850)
-++.-.+.++++|+.|+.+ |+| |+.|...+. .=. -+|+. | +..+-+.|+.+.++|..+.
T Consensus 52 q~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~v~ 131 (213)
T PRK10076 52 QAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVI 131 (213)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEE
Confidence 3566788999999999875 444 566532221 111 23332 2 1245566777888999998
Q ss_pred EecCceeccccCCCCCCcccccCCCeEeecCChhhHHHHHHHHHHHHHHHhccccccccCCceEEecccc----------
Q 003076 115 LRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIEN---------- 184 (850)
Q Consensus 115 lrpGPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiEN---------- 184 (850)
+|. |. +|++ ++++.-++++-+|++.+. +. +|-...-.+
T Consensus 132 iR~-~v----------------IPg~---nd~~e~i~~ia~~l~~l~--~~----------~~~llpyh~~g~~Ky~~lg 179 (213)
T PRK10076 132 PRL-PL----------------IPGF---TLSRENMQQALDVLIPLG--IK----------QIHLLPFHQYGEPKYRLLG 179 (213)
T ss_pred EEE-EE----------------ECCC---CCCHHHHHHHHHHHHHcC--Cc----------eEEEecCCccchhHHHHcC
Confidence 885 11 3654 456666666666655431 11 221111111
Q ss_pred -ccCCCccccCcchHHHHHHHHHHHhcCCCCc
Q 003076 185 -EYGPESKSLGAAGHAYVNWAAKMAVGLDTGV 215 (850)
Q Consensus 185 -Eyg~~~~~~~~~~~~y~~~l~~~~~~~g~~v 215 (850)
+|-.. +...+..+.++++++.+++.|+.+
T Consensus 180 ~~y~~~--~~~~~~~~~l~~~~~~~~~~gl~~ 209 (213)
T PRK10076 180 KTWSMK--EVPAPSSADVATMREMAERAGFQV 209 (213)
T ss_pred CcCccC--CCCCcCHHHHHHHHHHHHHcCCeE
Confidence 22111 122478899999999999998876
No 178
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=29.45 E-value=73 Score=34.18 Aligned_cols=56 Identities=13% Similarity=0.045 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCccCCC----CceeeeeccchHHHHHHHHHHcCcEEEEec
Q 003076 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS----PGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (850)
Q Consensus 58 ~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~----~G~fdF~g~~dl~~fl~la~~~gL~vilrp 117 (850)
+.+++.++.++++|..+|.+. ..+... +-.+... ...|.++.+.|+++|+.+.+-+
T Consensus 90 ~~~~~~i~~a~~lGa~~i~~~---~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 90 DMIKLAMDMAKEMNAGYTLIS---AAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHHhCCCEEEEc---CCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEec
Confidence 356677889999999999652 222211 1112221 1368999999999999999987
No 179
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=29.25 E-value=1e+02 Score=32.50 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=35.1
Q ss_pred HHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEEEec
Q 003076 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (850)
Q Consensus 64 l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vilrp 117 (850)
..++|++|++.|-+ -|..++ |..+ |+.+=++.|.++||.+||+.
T Consensus 74 ~~mLkd~G~~~vii-----GHSERR--f~Et---di~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 74 AEMLKDIGAKGTLI-----NHSERR--MKLA---DIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHHcCCCEEEE-----CcccCC--CCcc---HHHHHHHHHHHCCCEEEEEE
Confidence 44799999988877 455544 5544 69999999999999999997
No 180
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=29.18 E-value=45 Score=32.67 Aligned_cols=53 Identities=25% Similarity=0.417 Sum_probs=32.6
Q ss_pred chHHHHHHHHHHcCcEEEEecCceeccccCCCCCCcccccCCCeEeecCChhhHHHHHHHHHHHHHHHhcc
Q 003076 97 YDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNE 167 (850)
Q Consensus 97 ~dl~~fl~la~~~gL~vilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~ 167 (850)
.||..||+.|++.|+.|++-.-| +++.|- +.-|+ + .+.-+.++++|-.+++++
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wy---------dytG~-----~---~~~r~~~y~kI~~~~~~~ 88 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP-VNGKWY---------DYTGL-----S---KEMRQEYYKKIKYQLKSQ 88 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-----HHHH---------HHTT----------HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCceEEEecC-CcHHHH---------HHhCC-----C---HHHHHHHHHHHHHHHHHC
Confidence 39999999999999998876655 566662 11222 0 234456788888888743
No 181
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=28.15 E-value=16 Score=44.38 Aligned_cols=58 Identities=21% Similarity=0.304 Sum_probs=49.8
Q ss_pred cCCCCeEeEeeeeccCCCCCCCCCCCCCCccCCChhHHHHHHcCCCCceEEEecCCCc
Q 003076 766 CAPGQSITSIEFASFGTPSGTCGSFQKGTCHAPNSHAMLEKECIGQESCSIFISSGVF 823 (850)
Q Consensus 766 C~~g~~Is~I~~A~YGR~~~~C~~~~~~~C~~~~sl~~V~~~C~Gk~~C~i~a~~~~F 823 (850)
|.++.++..|..|.||..++.|+.+...+|.++++...+...|-.+..|+|......+
T Consensus 332 ~ep~lv~gd~~~~kyg~~~~~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck 389 (649)
T KOG0496|consen 332 CEPALVAGDITTAKYGNLREACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCK 389 (649)
T ss_pred cCccccccCcccccccchhhHHHHHHhcCCCCCCCccccCCCccccCceeEEechhhc
Confidence 4457778788999999988889999899999999998999999999999998865443
No 182
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=27.63 E-value=1e+02 Score=38.76 Aligned_cols=74 Identities=18% Similarity=0.263 Sum_probs=51.1
Q ss_pred ecCCCC---CHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeecc----chHHHHHHHHHHcCcEEEEecCceec
Q 003076 50 IHYPRS---TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS----YDLVRFIKTVQRVGLYAHLRIGPYVC 122 (850)
Q Consensus 50 ~Hy~r~---~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~----~dl~~fl~la~~~gL~vilrpGPyic 122 (850)
+|..|+ .-+.-+++.+.+++|||.. =++|+-.--.++.=||+-+ .++..|++-.++.|+++++-+=|+|.
T Consensus 300 f~~~RwgY~nls~~~dvv~~~~~agiPl---d~~~~DiDyMd~ykDFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is 376 (805)
T KOG1065|consen 300 FQLCRWGYKNLSVVRDVVENYRAAGIPL---DVIVIDIDYMDGYKDFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFIS 376 (805)
T ss_pred ceecccccccHHHHHHHHHHHHHcCCCc---ceeeeehhhhhcccceeeccccCcchHHHHHHHHhCCCeEEEEeCCccc
Confidence 444553 4455688999999999982 2445554444444455422 36899999999999999999888886
Q ss_pred cccC
Q 003076 123 AEWN 126 (850)
Q Consensus 123 aEw~ 126 (850)
.--.
T Consensus 377 ~~~~ 380 (805)
T KOG1065|consen 377 TNSS 380 (805)
T ss_pred cCcc
Confidence 4443
No 183
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=27.42 E-value=55 Score=34.46 Aligned_cols=16 Identities=25% Similarity=0.684 Sum_probs=14.2
Q ss_pred CCceeEEECCeeeeec
Q 003076 645 MGKGQVWINGQSIGRY 660 (850)
Q Consensus 645 ~gKG~vwVNG~nLGRY 660 (850)
=.+|.|||||++|.|.
T Consensus 54 pt~G~i~~~~~dl~~l 69 (223)
T COG2884 54 PTRGKILVNGHDLSRL 69 (223)
T ss_pred CCCceEEECCeecccc
Confidence 3569999999999998
No 184
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=26.86 E-value=56 Score=41.29 Aligned_cols=76 Identities=25% Similarity=0.479 Sum_probs=50.3
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE------------cccCCccCC------CCceeeeeccchHHHHHHHHHH-cCcEEEEe
Q 003076 56 TPEMWEDLIRKAKDGGLDVIDT------------YVFWNGHEP------SPGHYNFEGSYDLVRFIKTVQR-VGLYAHLR 116 (850)
Q Consensus 56 ~~~~W~~~l~k~ka~G~NtV~~------------yv~Wn~hEp------~~G~fdF~g~~dl~~fl~la~~-~gL~vilr 116 (850)
|-+.|+.+|+++|+.|.|+|.. |-.-+.||- ..++|.|+ |+..+++-+++ -++..|-.
T Consensus 140 pl~eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~~~~~~k~s~e---DV~~lV~~l~rewnvlsi~D 216 (1521)
T KOG3625|consen 140 PLDEWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDFSRPNRKYSFE---DVGQLVEKLKREWNVLSITD 216 (1521)
T ss_pred ChhhhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhhhccCCCCCHH---HHHHHHHHHHhhcCeeeeeh
Confidence 6789999999999999999973 433333332 33568888 89999998865 46665433
Q ss_pred cCceeccccCC-CCCCcccccCCCe
Q 003076 117 IGPYVCAEWNF-GGFPVWLKYVPGI 140 (850)
Q Consensus 117 pGPyicaEw~~-GG~P~WL~~~p~~ 140 (850)
+ + |+. ..=-.||+.+|+.
T Consensus 217 v---V---~NHtAnns~WlleHPea 235 (1521)
T KOG3625|consen 217 V---V---YNHTANNSKWLLEHPEA 235 (1521)
T ss_pred h---h---hhccccCCchhHhCchh
Confidence 2 1 111 1124677766653
No 185
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=26.77 E-value=67 Score=36.96 Aligned_cols=84 Identities=15% Similarity=0.250 Sum_probs=61.8
Q ss_pred EEEecccEEECCeEeEEEEEEecCCC-CCHhHHHHHHHHHHHC-CCCEEEEcccCCccCCCCceeeeeccchHHHHHHHH
Q 003076 29 VTYDRKAILINGQRRILISGSIHYPR-STPEMWEDLIRKAKDG-GLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTV 106 (850)
Q Consensus 29 v~~~~~~~~idG~p~~~~sG~~Hy~r-~~~~~W~~~l~k~ka~-G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la 106 (850)
|=.-+-+|-+...+-....=|+.|+- .|...||-+|..+.++ -=||+.+-|- |=+.|--++|+-. .|.+++++|
T Consensus 153 ILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~Aivvi-NP~NPcGnVys~~---HL~kiae~A 228 (447)
T KOG0259|consen 153 ILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVI-NPNNPCGNVYSED---HLKKIAETA 228 (447)
T ss_pred eecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEEe-CCCCCCcccccHH---HHHHHHHHH
Confidence 33333344444444444444555555 4888899999999987 7799988654 7788888899877 899999999
Q ss_pred HHcCcEEEEe
Q 003076 107 QRVGLYAHLR 116 (850)
Q Consensus 107 ~~~gL~vilr 116 (850)
+++|+-||..
T Consensus 229 ~klgi~vIaD 238 (447)
T KOG0259|consen 229 KKLGIMVIAD 238 (447)
T ss_pred HHhCCeEEeh
Confidence 9999998865
No 186
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=26.13 E-value=1.2e+02 Score=33.79 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=42.5
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEccc----CCccCC------CCc---------eeeeeccchHHHHHHHHHHcCcEEEEe
Q 003076 56 TPEMWEDLIRKAKDGGLDVIDTYVF----WNGHEP------SPG---------HYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (850)
Q Consensus 56 ~~~~W~~~l~k~ka~G~NtV~~yv~----Wn~hEp------~~G---------~fdF~g~~dl~~fl~la~~~gL~vilr 116 (850)
+.+.-++.|+.|...++|++..++- |.+.-+ ..| .|.- .|++.+++.|++.|+.||--
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~---~di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTK---EDIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEH---HHHHHHHHHHHHTT-EEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCH---HHHHHHHHHHHHcCCceeee
Confidence 7888899999999999999998875 443221 122 3333 49999999999999999966
Q ss_pred c
Q 003076 117 I 117 (850)
Q Consensus 117 p 117 (850)
+
T Consensus 93 i 93 (351)
T PF00728_consen 93 I 93 (351)
T ss_dssp E
T ss_pred c
Confidence 4
No 187
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=26.00 E-value=2e+02 Score=23.97 Aligned_cols=43 Identities=30% Similarity=0.487 Sum_probs=32.1
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEEE
Q 003076 60 WEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHL 115 (850)
Q Consensus 60 W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vil 115 (850)
.++.++++|+.|++.|.+= -|. ++. ...+|.+++++.||.||.
T Consensus 17 ~~~~~~~a~~~g~~~v~iT----Dh~------~~~---~~~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 17 PEELVKRAKELGLKAIAIT----DHG------NLF---GAVEFYKAAKKAGIKPII 59 (67)
T ss_pred HHHHHHHHHHcCCCEEEEe----eCC------ccc---CHHHHHHHHHHcCCeEEE
Confidence 6788999999999999862 111 222 357888999999998764
No 188
>PRK15492 triosephosphate isomerase; Provisional
Probab=25.81 E-value=1.2e+02 Score=33.06 Aligned_cols=49 Identities=12% Similarity=0.112 Sum_probs=38.5
Q ss_pred HHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEEEecC
Q 003076 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (850)
Q Consensus 64 l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vilrpG 118 (850)
..++|++|++.|-+ -|..++..|.= -+..+.+=++.|.++||.+|++.|
T Consensus 87 a~mLkd~G~~~vii-----GHSERR~~f~E-td~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 87 PLMLKEIGTQLVMI-----GHSERRHKFGE-TDQEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred HHHHHHcCCCEEEE-----CccccccccCc-chHHHHHHHHHHHHCCCEEEEEcC
Confidence 34799999999888 56666666643 345677788899999999999987
No 189
>PRK06703 flavodoxin; Provisional
Probab=25.60 E-value=3.5e+02 Score=26.32 Aligned_cols=101 Identities=12% Similarity=0.065 Sum_probs=59.4
Q ss_pred ECCeEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEEEec
Q 003076 38 INGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (850)
Q Consensus 38 idG~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vilrp 117 (850)
+.....++++-..+-.-.+|+.+++-+..+++.-++.....+|-...- .|.. .....+.+-+..++.|..++.++
T Consensus 46 l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~g~~----~y~~-~~~a~~~l~~~l~~~G~~~~~~~ 120 (151)
T PRK06703 46 LLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGSGDT----AYPL-FCEAVTIFEERLVERGAELVQEG 120 (151)
T ss_pred HhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEccCCC----ChHH-HHHHHHHHHHHHHHCCCEEcccC
Confidence 444555666555553334556677777777766666555556521100 0110 12345667777899999887763
Q ss_pred CceeccccCCCCCCcccccCCCeEee--cCChhhHHHHHHHHHHHHHHHh
Q 003076 118 GPYVCAEWNFGGFPVWLKYVPGISFR--TDNGPFKVAMQGFTQKIVQMMK 165 (850)
Q Consensus 118 GPyicaEw~~GG~P~WL~~~p~~~~R--~~d~~y~~~~~~~~~~l~~~l~ 165 (850)
+++. .++..-+++++.|.++|++.++
T Consensus 121 ----------------------~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 121 ----------------------LKIELAPETDEDVEKCSNFAIAFAEKFA 148 (151)
T ss_pred ----------------------eEEecCCCchhHHHHHHHHHHHHHHHHH
Confidence 1111 1124567888999999988776
No 190
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=25.59 E-value=2.1e+02 Score=30.33 Aligned_cols=90 Identities=11% Similarity=0.135 Sum_probs=63.8
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeee-ccchHHHHHHHHHHcCcEEEEecCceeccccCCCCCCccc
Q 003076 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFE-GSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWL 134 (850)
Q Consensus 56 ~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~-g~~dl~~fl~la~~~gL~vilrpGPyicaEw~~GG~P~WL 134 (850)
.+.+++..++.++++|+..+-+|..... ....|..+ |..|=..-+.+|+++|+ -+| -|-++
T Consensus 50 ~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~----p~g-----------s~IYf 111 (212)
T cd06418 50 SKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGF----PPG-----------TIIYF 111 (212)
T ss_pred CCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCC----CCC-----------CEEEE
Confidence 5778899999999999999999998766 22333333 67889999999999998 333 23333
Q ss_pred ccCCCeEeecCChhhHHHHHHHHHHHHHHHhcc
Q 003076 135 KYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNE 167 (850)
Q Consensus 135 ~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~ 167 (850)
.-+.+. .+..+...+..||+.+.+.|+..
T Consensus 112 avD~d~----~~~~~~~~v~~Y~~a~~~~l~~~ 140 (212)
T cd06418 112 AVDFDA----LDDEVTEVILPYFRGWNDALHEA 140 (212)
T ss_pred EeecCC----CcchhHHHHHHHHHHHHHHHHhc
Confidence 222221 12336778889999999988843
No 191
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=25.52 E-value=1e+02 Score=33.09 Aligned_cols=60 Identities=17% Similarity=0.052 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCccCCCC-ceeeeeccchHHHHHHHHHHcCcEEEEecC
Q 003076 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPSP-GHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (850)
Q Consensus 58 ~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~-G~fdF~g~~dl~~fl~la~~~gL~vilrpG 118 (850)
+++++.++.++++|.+.|.+.-+-...++.. -.++. -...|.++.++|+++|+.+.+.+-
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR-FIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH-HHHHHHHHHHHHHHhCCEEEEEec
Confidence 5578889999999999998631100011111 11110 013688889999999999998873
No 192
>PRK14566 triosephosphate isomerase; Provisional
Probab=25.49 E-value=1.4e+02 Score=32.81 Aligned_cols=49 Identities=24% Similarity=0.249 Sum_probs=37.9
Q ss_pred HHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEEEecC
Q 003076 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (850)
Q Consensus 64 l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vilrpG 118 (850)
..++|++|++.|-+ -|..++..|.= -+..+.+=++.|.++||.+|++.|
T Consensus 88 ~~mL~d~G~~~vii-----GHSERR~~f~E-td~~v~~Kv~~al~~gl~pIvCvG 136 (260)
T PRK14566 88 GQMLKDAGCRYVII-----GHSERRRMYGE-TSNIVAEKFAAAQKHGLTPILCVG 136 (260)
T ss_pred HHHHHHcCCCEEEE-----CcccccCCCCc-CHHHHHHHHHHHHHCCCEEEEEcC
Confidence 34799999998887 56666655542 244677788899999999999987
No 193
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.28 E-value=22 Score=36.42 Aligned_cols=66 Identities=21% Similarity=0.355 Sum_probs=44.2
Q ss_pred eEEEEEEecCCCC---CHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCc--eeeeeccchHHHHHHHHHHcCcEEEEe
Q 003076 43 RILISGSIHYPRS---TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPG--HYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (850)
Q Consensus 43 ~~~~sG~~Hy~r~---~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G--~fdF~g~~dl~~fl~la~~~gL~vilr 116 (850)
...-+|--.|.|+ .|-.-+ +-+.++|.+.+-+ -.--..| -|||-...+|..|.++|++|||.+-|.
T Consensus 116 ~VVAaGYaDa~Rvgsv~Pl~~P---~vaa~ag~DvaMv-----DTaiKDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 116 KVVAAGYADAHRVGSVSPLLLP---EVAAEAGADVAMV-----DTAIKDGKSLFDFMDEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred eEEeccccchhhccCcCccccH---HHHHhcCCCEEEE-----ecccccchhHHhhhcHHHHHHHHHHHHHcchHHHhc
Confidence 3455666667775 333333 2466778876543 1112344 599988889999999999999987765
No 194
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=25.11 E-value=4.6e+02 Score=27.63 Aligned_cols=49 Identities=22% Similarity=0.427 Sum_probs=33.0
Q ss_pred CCCCHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEE
Q 003076 53 PRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH 114 (850)
Q Consensus 53 ~r~~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vi 114 (850)
++.+++ .++.|+++|++.+.+- |=| .|||. ..-|.+.++..++.|+..+
T Consensus 63 f~~~~~----~~~~L~~~G~d~~tla---NNH-----~fD~G-~~gl~~t~~~l~~~~i~~~ 111 (239)
T cd07381 63 FRAPPE----VADALKAAGFDVVSLA---NNH-----TLDYG-EEGLLDTLDALDEAGIAHA 111 (239)
T ss_pred ecCCHH----HHHHHHHhCCCEEEcc---ccc-----ccccc-hHHHHHHHHHHHHcCCcee
Confidence 455655 4668999999999872 223 34543 2357777788888898754
No 195
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=25.05 E-value=1.5e+02 Score=35.06 Aligned_cols=56 Identities=21% Similarity=0.395 Sum_probs=45.7
Q ss_pred ecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEEEec
Q 003076 50 IHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (850)
Q Consensus 50 ~Hy~r~~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vilrp 117 (850)
..|.+.|.+.-++.++++.+.|+..|+++..-|.. +++...++.|+++|+.|.+.+
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEEE
Confidence 44666677778889999999999999999886654 258889999999999886653
No 196
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=25.02 E-value=1.6e+02 Score=34.77 Aligned_cols=73 Identities=14% Similarity=0.235 Sum_probs=52.1
Q ss_pred ecccEEECCeEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEccc----CCccC----------------------
Q 003076 32 DRKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVF----WNGHE---------------------- 85 (850)
Q Consensus 32 ~~~~~~idG~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~NtV~~yv~----Wn~hE---------------------- 85 (850)
.-|.|+||=.| |++ +.+.-++.|+.|-...+|+...++- |-+--
T Consensus 6 ~~RGlmLDvaR--------~f~--~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~ 75 (445)
T cd06569 6 EYRGMHLDVAR--------NFH--SKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTC 75 (445)
T ss_pred cccceeeeccC--------CCC--CHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccc
Confidence 34556666444 443 7899999999999999999998873 53211
Q ss_pred -------------CCCceeeeeccchHHHHHHHHHHcCcEEEEec
Q 003076 86 -------------PSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (850)
Q Consensus 86 -------------p~~G~fdF~g~~dl~~fl~la~~~gL~vilrp 117 (850)
+..|.|. ..|+..+++.|++.|+.||--+
T Consensus 76 ~~~~~~~~~~~~~~~~g~YT---~~di~eiv~yA~~rgI~VIPEI 117 (445)
T cd06569 76 LLPQLGSGPDTNNSGSGYYS---RADYIEILKYAKARHIEVIPEI 117 (445)
T ss_pred cccccccCcccCcccCCccC---HHHHHHHHHHHHHcCCEEEEcc
Confidence 0112232 3599999999999999999654
No 197
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.02 E-value=1.5e+02 Score=23.98 Aligned_cols=54 Identities=13% Similarity=0.260 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEE
Q 003076 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYA 113 (850)
Q Consensus 58 ~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~v 113 (850)
..-.+.+.-+.+.|+|.+.++. +...+.....+-|.-. +.++.++..+++|..|
T Consensus 11 G~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 11 GGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred cHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 3456778889999999998876 3333334566666533 4889999999999765
No 198
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=24.95 E-value=3.9e+02 Score=31.33 Aligned_cols=83 Identities=18% Similarity=0.191 Sum_probs=59.5
Q ss_pred ccEEECCeEeEEEEEEecCCCC---CHhHHHHHHHHHHHCCCCE--E--E-EcccCCccCCCCceeeeeccchHHHHHHH
Q 003076 34 KAILINGQRRILISGSIHYPRS---TPEMWEDLIRKAKDGGLDV--I--D-TYVFWNGHEPSPGHYNFEGSYDLVRFIKT 105 (850)
Q Consensus 34 ~~~~idG~p~~~~sG~~Hy~r~---~~~~W~~~l~k~ka~G~Nt--V--~-~yv~Wn~hEp~~G~fdF~g~~dl~~fl~l 105 (850)
++..+.+.-|+|+.+.=+-++. .++.=+.-.+.+++.|++. | . .|. -|+-.|.+..++++ ..-|.+-|+.
T Consensus 149 ~a~~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYl-INLASpd~e~rekS-v~~~~~eL~r 226 (413)
T PTZ00372 149 NAYNIAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYL-INLANPDKEKREKS-YDAFLDDLQR 226 (413)
T ss_pred HHHHcCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCce-ecCCCCCHHHHHHH-HHHHHHHHHH
Confidence 4566777889999887776654 3444555566778888752 3 2 244 88888888888877 3457788899
Q ss_pred HHHcCcE-EEEecC
Q 003076 106 VQRVGLY-AHLRIG 118 (850)
Q Consensus 106 a~~~gL~-vilrpG 118 (850)
|++.|.. |++-||
T Consensus 227 A~~LGa~~VV~HPG 240 (413)
T PTZ00372 227 CEQLGIKLYNFHPG 240 (413)
T ss_pred HHHcCCCEEEECCC
Confidence 9999998 667787
No 199
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=24.91 E-value=4.4e+02 Score=26.68 Aligned_cols=49 Identities=16% Similarity=0.279 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhccccccccCCceEEeccccccCCCccccCcchHHHHHHHHHHHh
Q 003076 153 MQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKMAV 209 (850)
Q Consensus 153 ~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~ 209 (850)
+..-+.+++..++ ..+.++|.| .||.|.-.-.+.+-.+.|.+.|-.+-+
T Consensus 101 ~~~~i~~l~~~l~------~~~~~~viV--snEvG~g~vp~~~~~r~f~d~lG~lnq 149 (169)
T cd00544 101 IADEIDALLAAVR------NKPGTLILV--SNEVGLGVVPENALGRRFRDELGRLNQ 149 (169)
T ss_pred HHHHHHHHHHHHH------cCCCcEEEE--ECCcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4445666777776 245678877 599987544455678889887665544
No 200
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=24.79 E-value=1.9e+02 Score=37.43 Aligned_cols=74 Identities=12% Similarity=0.131 Sum_probs=55.8
Q ss_pred ecCCCC---CHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeecc--chHHHHHHHHHHcCcEEEEecCceeccc
Q 003076 50 IHYPRS---TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVCAE 124 (850)
Q Consensus 50 ~Hy~r~---~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~--~dl~~fl~la~~~gL~vilrpGPyicaE 124 (850)
+|..|. +.+..++.++++++.||-.=.+++-|.++.- -+.|.|+.. -|..++++..++.|+++++-.-|+|.+|
T Consensus 190 y~qSR~~Y~sq~eV~eva~~fre~~IP~DvIwlDidYm~g-~~~FTwD~~rFPdP~~mv~~Lh~~G~kvv~iidPgI~~d 268 (978)
T PLN02763 190 YQQCRWSYESAKRVAEIARTFREKKIPCDVVWMDIDYMDG-FRCFTFDKERFPDPKGLADDLHSIGFKAIWMLDPGIKAE 268 (978)
T ss_pred eeeccCCCCCHHHHHHHHHHHHHcCCCceEEEEehhhhcC-CCceeECcccCCCHHHHHHHHHHCCCEEEEEEcCCCccC
Confidence 455564 5667888999999999988777766655542 335666643 3889999999999999988778888654
No 201
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=24.70 E-value=1.5e+02 Score=32.91 Aligned_cols=88 Identities=19% Similarity=0.351 Sum_probs=59.0
Q ss_pred HHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcE--EEEecCcee-------ccccCCCCCCcc
Q 003076 63 LIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLY--AHLRIGPYV-------CAEWNFGGFPVW 133 (850)
Q Consensus 63 ~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~--vilrpGPyi-------caEw~~GG~P~W 133 (850)
+|++-.++|-+.+-|-.| ||.+ .+.+|++.|++.|+. |+.-+-|-. .++...-.+|.|
T Consensus 168 ~Lk~K~~aGA~~~iTQ~~----------Fd~~---~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~ 234 (296)
T PRK09432 168 NLKRKVDAGANRAITQFF----------FDVE---SYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAW 234 (296)
T ss_pred HHHHHHHcCCCeeecccc----------cchH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHH
Confidence 566666788888877433 4444 789999999999954 555555532 167777889999
Q ss_pred cccC-CCeEeecCC-hhhHHHHHHHHHHHHHHHhc
Q 003076 134 LKYV-PGISFRTDN-GPFKVAMQGFTQKIVQMMKN 166 (850)
Q Consensus 134 L~~~-p~~~~R~~d-~~y~~~~~~~~~~l~~~l~~ 166 (850)
+.+. .. . .+| +..+++--++..++++.|.+
T Consensus 235 l~~~l~~--~-~d~~~~~~~~Gi~~a~e~i~~L~~ 266 (296)
T PRK09432 235 MAKMFDG--L-DDDAETRKLVGASIAMDMVKILSR 266 (296)
T ss_pred HHHHHHh--c-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9862 11 1 233 34566667788888887773
No 202
>PRK10658 putative alpha-glucosidase; Provisional
Probab=24.60 E-value=1.9e+02 Score=35.85 Aligned_cols=66 Identities=17% Similarity=0.296 Sum_probs=47.4
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEc--ccCCccCC-CCceeeeeccc--hHHHHHHHHHHcCcEEEEecCceecc
Q 003076 56 TPEMWEDLIRKAKDGGLDVIDTY--VFWNGHEP-SPGHYNFEGSY--DLVRFIKTVQRVGLYAHLRIGPYVCA 123 (850)
Q Consensus 56 ~~~~W~~~l~k~ka~G~NtV~~y--v~Wn~hEp-~~G~fdF~g~~--dl~~fl~la~~~gL~vilrpGPyica 123 (850)
+.+.-.+.++++|+.||-.=.+. .+|- +. .-+.|.|+..+ |.+++++..++.|+++++.+=|||..
T Consensus 281 ~e~~v~~~~~~~r~~~iP~d~i~lD~~w~--~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~ 351 (665)
T PRK10658 281 DEATVNSFIDGMAERDLPLHVFHFDCFWM--KEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQ 351 (665)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEchhhh--cCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCC
Confidence 45556788899999998753333 3453 22 22466665432 88999999999999999999888853
No 203
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=24.57 E-value=52 Score=30.49 Aligned_cols=19 Identities=37% Similarity=0.167 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHhhcc
Q 003076 5 SVSKLLTWLWMALLLGTEL 23 (850)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~ 23 (850)
|-.-||++|+|++||++++
T Consensus 3 SK~~llL~l~LA~lLlisS 21 (95)
T PF07172_consen 3 SKAFLLLGLLLAALLLISS 21 (95)
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 3334666677777666653
No 204
>PRK09875 putative hydrolase; Provisional
Probab=24.07 E-value=2.1e+02 Score=31.77 Aligned_cols=89 Identities=10% Similarity=0.036 Sum_probs=58.9
Q ss_pred eEEEecccEEECCeEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHH
Q 003076 28 TVTYDRKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQ 107 (850)
Q Consensus 28 ~v~~~~~~~~idG~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~ 107 (850)
.+++-+..++++..++ .+......-..+.=.+.|+.+|++|.+||----+.. -.||...+.++++
T Consensus 7 G~tl~HEHl~~~~~~~---~~~~~~~l~~~~~~~~el~~~~~~Gg~tiVd~T~~g------------~GRd~~~l~~is~ 71 (292)
T PRK09875 7 GYTLAHEHLHIDLSGF---KNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRY------------MGRNAQFMLDVMR 71 (292)
T ss_pred CcceecCCeEecChhh---cCCcccccccHHHHHHHHHHHHHhCCCeEEecCCCc------------cCcCHHHHHHHHH
Confidence 4566667777666331 122222112445556688999999999984222111 2379999999999
Q ss_pred HcCcEEEEecCceeccccCCCCCCccccc
Q 003076 108 RVGLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (850)
Q Consensus 108 ~~gL~vilrpGPyicaEw~~GG~P~WL~~ 136 (850)
+-|+.||.-.|-|.-. -+|.|+..
T Consensus 72 ~tgv~Iv~~TG~y~~~-----~~p~~~~~ 95 (292)
T PRK09875 72 ETGINVVACTGYYQDA-----FFPEHVAT 95 (292)
T ss_pred HhCCcEEEcCcCCCCc-----cCCHHHhc
Confidence 9999999999988532 26888874
No 205
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=23.88 E-value=1.7e+02 Score=27.72 Aligned_cols=70 Identities=16% Similarity=0.179 Sum_probs=43.6
Q ss_pred eEEEecccEEECCeEeEEEEEEecCCC-------CCHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHH
Q 003076 28 TVTYDRKAILINGQRRILISGSIHYPR-------STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLV 100 (850)
Q Consensus 28 ~v~~~~~~~~idG~p~~~~sG~~Hy~r-------~~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~ 100 (850)
-+-++.+.=.++|.+.+-=-.++ +.. .+++...+.++.+++.|+..|=+. +| ..-+
T Consensus 30 v~~Vnp~~~~i~G~~~y~sl~e~-p~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~---------~g-------~~~~ 92 (116)
T PF13380_consen 30 VYPVNPKGGEILGIKCYPSLAEI-PEPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQ---------PG-------AESE 92 (116)
T ss_dssp EEEESTTCSEETTEE-BSSGGGC-SST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE----------TT-------S--H
T ss_pred EEEECCCceEECcEEeeccccCC-CCCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEE---------cc-------hHHH
Confidence 34455666677777643322222 111 488999999999999998877552 11 2458
Q ss_pred HHHHHHHHcCcEEE
Q 003076 101 RFIKTVQRVGLYAH 114 (850)
Q Consensus 101 ~fl~la~~~gL~vi 114 (850)
+++++|+++||.++
T Consensus 93 ~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 93 ELIEAAREAGIRVI 106 (116)
T ss_dssp HHHHHHHHTT-EEE
T ss_pred HHHHHHHHcCCEEE
Confidence 89999999999866
No 206
>PRK14565 triosephosphate isomerase; Provisional
Probab=23.72 E-value=1.4e+02 Score=32.25 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=35.3
Q ss_pred HHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEEEecC
Q 003076 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (850)
Q Consensus 64 l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vilrpG 118 (850)
.+++|++|++.|-+ -|..++-.|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 78 ~~mLkd~G~~~vii-----GHSERR~~f~Et-d~~V~~Kv~~al~~gl~pIvCiG 126 (237)
T PRK14565 78 AKMLKECGCSYVIL-----GHSERRSTFHET-DSDIRLKAESAIESGLIPIICVG 126 (237)
T ss_pred HHHHHHcCCCEEEE-----CcccccCcCCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 45799999998887 566666555433 22333444889999999999998
No 207
>PLN02429 triosephosphate isomerase
Probab=23.49 E-value=1.4e+02 Score=33.72 Aligned_cols=49 Identities=18% Similarity=0.072 Sum_probs=33.0
Q ss_pred HHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEEEecC
Q 003076 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (850)
Q Consensus 64 l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vilrpG 118 (850)
..++|++|++.|-+ -|..++-.|.=+ +..+.+=+..|.++||.+|+++|
T Consensus 140 a~mLkd~Gv~~Vii-----GHSERR~~f~Et-d~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 140 VEQLKDLGCKWVIL-----GHSERRHVIGEK-DEFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred HHHHHHcCCCEEEe-----CccccCCCCCcC-HHHHHHHHHHHHHCcCEEEEEcC
Confidence 34689999988877 465555555422 22233333449999999999998
No 208
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=23.37 E-value=2.7e+02 Score=31.21 Aligned_cols=68 Identities=22% Similarity=0.459 Sum_probs=50.0
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEccc-CCc-cCCCCce-----eeeecc--chHHHHHHHHHHcCcEEEEecCceecc
Q 003076 56 TPEMWEDLIRKAKDGGLDVIDTYVF-WNG-HEPSPGH-----YNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVCA 123 (850)
Q Consensus 56 ~~~~W~~~l~k~ka~G~NtV~~yv~-Wn~-hEp~~G~-----fdF~g~--~dl~~fl~la~~~gL~vilrpGPyica 123 (850)
+.+.-++.++++++.||-.=.+++- |.. ++..-|. |+|+-. -|..++++..++.|++|++..=|+|+.
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~~ 97 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYINPYLAD 97 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEecCceec
Confidence 7777899999999999987666653 532 2332232 444433 389999999999999999988777753
No 209
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=23.25 E-value=1.1e+02 Score=32.57 Aligned_cols=59 Identities=14% Similarity=-0.041 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCccCCCCce-eeeeccchHHHHHHHHHHcCcEEEEec
Q 003076 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGH-YNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (850)
Q Consensus 58 ~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~-fdF~g~~dl~~fl~la~~~gL~vilrp 117 (850)
+..++.++.++++|..+|.+...+.--...+.+ ++ .-...|.++.++|+++|+.+.+-|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~-~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHA-TLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHcCCEEEEEe
Confidence 557888999999999999774433211111111 11 112467888889999999999987
No 210
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=23.05 E-value=3.1e+02 Score=33.69 Aligned_cols=109 Identities=13% Similarity=0.153 Sum_probs=76.1
Q ss_pred eEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEEEecCce
Q 003076 41 QRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPY 120 (850)
Q Consensus 41 ~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vilrpGPy 120 (850)
++-+.+++..|+.+.+.+.=-++|++-.++|...+-|=.+++. + .+.+|++.+++.++.+|.-+-|.
T Consensus 461 ~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~fd~----------~---~~~~~~~~~~~~~vpIi~GImPi 527 (612)
T PRK08645 461 KTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPVYDE----------E---LIEELLEATKHLGVPIFIGIMPL 527 (612)
T ss_pred CCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEecccCCH----------H---HHHHHHHHHhcCCCCEEEEeeec
Confidence 4557899999987766555445677777899999999665443 3 68888888887788888877765
Q ss_pred ecc--------ccCCCCCCcccccC-CCeEeecCChhhHHHHHHHHHHHHHHHh
Q 003076 121 VCA--------EWNFGGFPVWLKYV-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (850)
Q Consensus 121 ica--------Ew~~GG~P~WL~~~-p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (850)
... +|..-=+|.|+.+. .. .. +....+++-.++..++++.|.
T Consensus 528 ~s~k~~~~~~~~~~Gv~vP~~l~~~l~~--~~-d~~~~~~~gv~~a~e~i~~l~ 578 (612)
T PRK08645 528 VSYRNAEFLHNEVPGITLPEEIRERMRA--VE-DKEEAREEGVAIARELIDAAR 578 (612)
T ss_pred CCHHHHHHHHhCCCCCCCCHHHHHHHHh--cC-CchHHHHHHHHHHHHHHHHHH
Confidence 443 24444579998762 11 11 224667777788888888776
No 211
>PRK14567 triosephosphate isomerase; Provisional
Probab=22.96 E-value=1.5e+02 Score=32.32 Aligned_cols=49 Identities=18% Similarity=0.254 Sum_probs=38.0
Q ss_pred HHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEEEecC
Q 003076 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (850)
Q Consensus 64 l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vilrpG 118 (850)
..++|++|++.|-+ -|..++-.|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 78 ~~mLkd~G~~yvii-----GHSERR~~f~Et-d~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 78 ARMLEDIGCDYLLI-----GHSERRSLFAES-DEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHHHcCCCEEEE-----CcccccCccCCC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 34799999998887 566666555533 44677788899999999999988
No 212
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=22.64 E-value=61 Score=33.03 Aligned_cols=42 Identities=17% Similarity=0.390 Sum_probs=29.3
Q ss_pred chHHHHHHHHHHc-CcEEEEecCceecccc---CCCCCCcccccCC
Q 003076 97 YDLVRFIKTVQRV-GLYAHLRIGPYVCAEW---NFGGFPVWLKYVP 138 (850)
Q Consensus 97 ~dl~~fl~la~~~-gL~vilrpGPyicaEw---~~GG~P~WL~~~p 138 (850)
..+..|++.++++ |..++|=.+++..... .....|.||.+.+
T Consensus 103 ~~~~~f~~~v~~~~G~~~~iY~~~~~~~~~~~~~~~~~~lWiA~Y~ 148 (184)
T cd06525 103 DYVLRFIEEFEKLSGLKVGIYTYTSFINNNLDSRLSSYPLWIANYG 148 (184)
T ss_pred HHHHHHHHHHHHHHCCCeEEEecHHHHHHhccccccCCCeEEEecc
Confidence 4678999999998 9988887777543221 2345678887654
No 213
>PLN03059 beta-galactosidase; Provisional
Probab=22.50 E-value=3.2e+02 Score=34.79 Aligned_cols=42 Identities=26% Similarity=0.403 Sum_probs=31.4
Q ss_pred CCceEEEEEEeCCCCCC------ceEEeeCCCCc-eeEEECCeeeeecc
Q 003076 620 QSLKWYKAYFDAPTGNE------PLALDLRSMGK-GQVWINGQSIGRYW 661 (850)
Q Consensus 620 ~~p~wYk~~F~~p~~~d------~~~Ldl~g~gK-G~vwVNG~nLGRYW 661 (850)
....||+++|+++.... ...|.+.+.+- -+|||||.-+|.-+
T Consensus 469 ~dYlwY~t~i~~~~~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~ 517 (840)
T PLN03059 469 TDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVY 517 (840)
T ss_pred CceEEEEEEEeecCCccccccCCCceEEEcccCcEEEEEECCEEEEEEE
Confidence 46799999999865421 12377777664 68999999999876
No 214
>PLN02561 triosephosphate isomerase
Probab=21.75 E-value=1.6e+02 Score=32.15 Aligned_cols=49 Identities=12% Similarity=0.020 Sum_probs=38.3
Q ss_pred HHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEEEecC
Q 003076 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (850)
Q Consensus 64 l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vilrpG 118 (850)
..++|++|++.|-+ -|..++..|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 81 ~~mL~d~G~~~vii-----GHSERR~~f~Et-d~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 81 AEMLVNLGIPWVIL-----GHSERRALLGES-NEFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred HHHHHHcCCCEEEE-----CcccccCccCCC-hHHHHHHHHHHHHCcCEEEEEcC
Confidence 45799999998887 566666655433 45677778889999999999988
No 215
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=21.66 E-value=2.9e+02 Score=29.91 Aligned_cols=104 Identities=17% Similarity=0.225 Sum_probs=64.2
Q ss_pred EecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcC--cEEEEecCceec----
Q 003076 49 SIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVG--LYAHLRIGPYVC---- 122 (850)
Q Consensus 49 ~~Hy~r~~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~g--L~vilrpGPyic---- 122 (850)
+.|+...+.+.=-++|++=.++|.+.+-|=.+.+ .+ .+.+|++.|++.| +.||+.+-|-..
T Consensus 138 e~hp~~~~~~~~~~~L~~Ki~aGA~f~iTQ~~fd----------~~---~~~~~~~~~~~~gi~vPIi~GI~p~~s~~~l 204 (274)
T cd00537 138 EGHPEAPSLEEDIKRLKRKVDAGADFIITQLFFD----------ND---AFLRFVDRCRAAGITVPIIPGIMPLTSYKQA 204 (274)
T ss_pred CcCCCCCCHHHHHHHHHHHHHCCCCEEeeccccc----------HH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHH
Confidence 4454444333333455555566999999855432 22 7899999999998 557777666543
Q ss_pred ---cccCCCCCCcccccCCCeEeecCChhhHHHHHHHHHHHHHHHhc
Q 003076 123 ---AEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKN 166 (850)
Q Consensus 123 ---aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~ 166 (850)
+++-.-.+|.|+.+.=. ....+....+++-.++..++++.+.+
T Consensus 205 ~~~~~~~Gv~vP~~~~~~l~-~~~~~~~~~~~~g~~~~~~l~~~l~~ 250 (274)
T cd00537 205 KRFAKLCGVEIPDWLLERLE-KLKDDAEAVRAEGIEIAAELCDELLE 250 (274)
T ss_pred HHHHHhhCCCCCHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45666678999986210 01122234455666778888877773
No 216
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=21.66 E-value=1.2e+02 Score=30.82 Aligned_cols=22 Identities=23% Similarity=0.613 Sum_probs=18.4
Q ss_pred EEeeCCCCceeEEECCeeeeec
Q 003076 639 ALDLRSMGKGQVWINGQSIGRY 660 (850)
Q Consensus 639 ~Ldl~g~gKG~vwVNG~nLGRY 660 (850)
.|..++.|+=.+||||+.+|+-
T Consensus 7 ~l~isa~g~Y~l~vNG~~V~~~ 28 (172)
T PF08531_consen 7 RLYISALGRYELYVNGERVGDG 28 (172)
T ss_dssp EEEEEEESEEEEEETTEEEEEE
T ss_pred EEEEEeCeeEEEEECCEEeeCC
Confidence 4667777888899999999974
No 217
>PLN02231 alanine transaminase
Probab=21.64 E-value=2e+02 Score=34.64 Aligned_cols=60 Identities=15% Similarity=0.114 Sum_probs=46.5
Q ss_pred CCCCHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEEEe
Q 003076 53 PRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (850)
Q Consensus 53 ~r~~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vilr 116 (850)
+.+..+..++.++..+..|.++--+++. |-|.|.=-.++=+ .+.+++++|+++|+++|.-
T Consensus 251 ~~~d~~~Le~~l~~~~~~~~~~k~ivl~-nP~NPTG~vls~e---~l~~Iv~~a~~~~l~lI~D 310 (534)
T PLN02231 251 WGLEISELKKQLEDARSKGITVRALVVI-NPGNPTGQVLAEE---NQRDIVEFCKQEGLVLLAD 310 (534)
T ss_pred CCCCHHHHHHHHHHHhhcCCCeEEEEEe-CCCCCCCcCCCHH---HHHHHHHHHHHcCCEEEEE
Confidence 4567777777777777777776555665 7788887677655 8999999999999999876
No 218
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=21.60 E-value=2e+02 Score=32.18 Aligned_cols=123 Identities=20% Similarity=0.251 Sum_probs=74.7
Q ss_pred cEEECCeEeEEEEE------Eec---CCCCCHhHHHHHHHHHHH---CCCCEEEE-cccCCccCC-------CCceeeee
Q 003076 35 AILINGQRRILISG------SIH---YPRSTPEMWEDLIRKAKD---GGLDVIDT-YVFWNGHEP-------SPGHYNFE 94 (850)
Q Consensus 35 ~~~idG~p~~~~sG------~~H---y~r~~~~~W~~~l~k~ka---~G~NtV~~-yv~Wn~hEp-------~~G~fdF~ 94 (850)
.+.-+|||+.-+-- +.| -.-..+..||--+.-+|+ .|+|-|+. ||-....-+ ....+..+
T Consensus 161 av~~~gKpw~~~~ngaLrKe~~~ehWVd~y~~~~WeYNvtIAKEa~~fGfdEiQFDYIRFP~dg~~l~~A~~~~n~~~m~ 240 (400)
T COG1306 161 AVYKDGKPWKAFTNGALRKESDGEHWVDAYDKNLWEYNVTIAKEAAKFGFDEIQFDYIRFPADGGGLDKALNYRNTDNMT 240 (400)
T ss_pred EEEcCCCcchhhhcccccccccceeeecccchhhhhhhHHHHHHHHHcCccceeeeEEEccCCCCchhhhhcccccccCC
Confidence 34456777654432 222 222478899986655554 59999997 776432222 33455555
Q ss_pred ccchHHHHHHHHHHcCcEEEEecCceeccccCCCCCCcccccCCCeEeecCChhhHHHHHHHHHHHHHHHhccccccccC
Q 003076 95 GSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQG 174 (850)
Q Consensus 95 g~~dl~~fl~la~~~gL~vilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~g 174 (850)
...-|..||..|+|. |+|=+-. +--|.-.|......+ -.+.+++..|++.|.|.+- |-++++|
T Consensus 241 ~~~Al~sfL~yArE~-l~vpIS~--------DIYG~nGw~~t~~~~------GQ~~e~ls~yVDvIsPMfY--PSHy~~~ 303 (400)
T COG1306 241 KSEALQSFLHYAREE-LEVPISA--------DIYGQNGWSSTDMAL------GQFWEALSSYVDVISPMFY--PSHYGKG 303 (400)
T ss_pred hHHHHHHHHHHHHHh-cccceEE--------EeecccCccCCcchh------hhhHHHHHhhhhhcccccc--ccccccc
Confidence 556899999999883 5433222 223455565442211 3577888889999888887 6555553
No 219
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=21.27 E-value=3.6e+02 Score=30.31 Aligned_cols=61 Identities=16% Similarity=0.162 Sum_probs=45.4
Q ss_pred HHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEEEecCceeccccCCCCCCcccccCC
Q 003076 61 EDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVP 138 (850)
Q Consensus 61 ~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vilrpGPyicaEw~~GG~P~WL~~~p 138 (850)
...+...++.|.+||-.--. +| =.||..+..+.+++-||.+|...|+|.-+.|+ .|+...+
T Consensus 51 ~~e~~~~~a~Gg~TIVD~T~-------~~-----~GRdv~~m~~vs~atglnIV~~TGfy~~~~~p-----~~~~~~~ 111 (316)
T COG1735 51 IAELKRLMARGGQTIVDATN-------IG-----IGRDVLKMRRVAEATGLNIVAATGFYKAAFHP-----EYFALRP 111 (316)
T ss_pred HHHHHHHHHcCCCeEeeCCc-------cc-----cCcCHHHHHHHHHHhCCcEEEeccccccccch-----hHHhhCC
Confidence 34567777789999864210 11 12699999999999999999999999988875 6776433
No 220
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=21.17 E-value=2.2e+02 Score=31.15 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=40.9
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEEEe
Q 003076 55 STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (850)
Q Consensus 55 ~~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vilr 116 (850)
.|.+.=++++++..+.|+..|+++++.+. + ..+...++.|+++|+.|..-
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~---------~---~~~~~~i~~ak~~G~~v~~~ 137 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALND---------V---RNLEVAIKAVKKAGKHVEGA 137 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCCh---------H---HHHHHHHHHHHHCCCeEEEE
Confidence 45556688999999999999999888665 2 37889999999999987753
No 221
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=21.17 E-value=3e+02 Score=28.40 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=28.3
Q ss_pred chHHHHHHHHHHcCcEEEEecCceeccccCC-----C--CCCcccccCCC
Q 003076 97 YDLVRFIKTVQRVGLYAHLRIGPYVCAEWNF-----G--GFPVWLKYVPG 139 (850)
Q Consensus 97 ~dl~~fl~la~~~gL~vilrpGPyicaEw~~-----G--G~P~WL~~~p~ 139 (850)
+.+..|++.+++.|.++++=.+++.....-. . ..|.||.+.+.
T Consensus 108 ~~~~~f~~~v~~~G~~~~iYt~~~~~~~~~~~~~~~~~~~~~lWiA~Y~~ 157 (196)
T cd06415 108 SAILAFMDTIKDAGYKPMLYSYKPLLLNNVDYSQIIAKYPNSLWVAAYPT 157 (196)
T ss_pred HHHHHHHHHHHHhCCCcEEEecHHHHHhccCHHHHHhhCCCCeEEEcCCC
Confidence 4678899999999988777776654333211 1 23589887654
No 222
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=20.94 E-value=1.7e+02 Score=31.83 Aligned_cols=72 Identities=18% Similarity=0.114 Sum_probs=45.4
Q ss_pred CeEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEEEecC
Q 003076 40 GQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (850)
Q Consensus 40 G~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vilrpG 118 (850)
| ++.+.+=.+|+...-.-.=+--..++|++|++.|-+ -|..++-.|+=+ ...+.+=++.|.++||.+||+.|
T Consensus 58 g-~i~~gAQn~~~~~~GA~TGeiS~~mL~d~G~~~vii-----GHSERR~~~~E~-d~~i~~K~~aa~~~Gl~pIlCvG 129 (251)
T COG0149 58 G-NIKVGAQNVDPEDSGAFTGEISAEMLKDLGAKYVLI-----GHSERRLYFGET-DELIAKKVKAAKEAGLTPILCVG 129 (251)
T ss_pred C-CceEEeccCCcccCCCccCcCCHHHHHHcCCCEEEE-----Cccccccccccc-hHHHHHHHHHHHHCCCeEEEEcC
Confidence 5 555555556654321111111234699999998887 455555444433 23566888899999999999987
No 223
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=20.88 E-value=1.2e+03 Score=27.08 Aligned_cols=159 Identities=13% Similarity=0.080 Sum_probs=88.3
Q ss_pred cceeEEEecccEEECCeEeEEEEEEecCCCCCHhHHHHHHHHHHHC-CC-CEEEEcccCCccCCCCceeeeeccchHHHH
Q 003076 25 QCSTVTYDRKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDG-GL-DVIDTYVFWNGHEPSPGHYNFEGSYDLVRF 102 (850)
Q Consensus 25 ~~~~v~~~~~~~~idG~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~-G~-NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~f 102 (850)
..+.|+.-...|.--|.||-.+.+ ..-+| ..++..+++.+++.+ ++ -.|+..++| +.. .|+.++
T Consensus 9 ~~~~~~~~~w~~~~~~tRf~~f~~-~g~~r-~~~e~~~d~~~v~~L~~~~~~v~lH~~~------d~~------~d~~~~ 74 (378)
T TIGR02635 9 KALKIETPSWAYGNSGTRFKVFHQ-EGAAR-NVFEKIEDAALVHRLTGICPTVALHIPW------DRV------EDYEEL 74 (378)
T ss_pred HhcEeeccccccCCCCcccccCCC-CCCCC-CHHHHHHHHHHHHhhcCCCCceeeccCC------ccc------cCHHHH
Confidence 456677777778878888744322 11122 345555666666665 33 355555556 222 368899
Q ss_pred HHHHHHcCcEEE-EecCceeccccCCCCCCcccccCCCeEeecCChhhHHHHHHHHHHHHHHHhccccccccCCceE-Ee
Q 003076 103 IKTVQRVGLYAH-LRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPII-LS 180 (850)
Q Consensus 103 l~la~~~gL~vi-lrpGPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII-~~ 180 (850)
.++++++||.|. +-|+=+- -|.+ ..+ .+-+.||..++..-.+.++.++.-+ .+ |.+.| .|
T Consensus 75 ~~~l~~~GL~v~~i~p~~f~--------~~~~---~~G-SLt~pD~~vR~~AIe~~k~~idiA~--eL----Ga~~I~iW 136 (378)
T TIGR02635 75 ARYAEELGLKIGAINPNLFQ--------DDDY---KFG-SLTHPDKRIRRKAIDHLLECVDIAK--KT----GSKDISLW 136 (378)
T ss_pred HHHHHHcCCceeeeeCCccC--------Cccc---CCC-CCCCCCHHHHHHHHHHHHHHHHHHH--Hh----CCCeEEEe
Confidence 999999999987 6665110 0111 112 4566788888888888888777666 33 44443 33
Q ss_pred cc-c-cccCCCccccCcchHHHHHHHHHHHhcCCCCcce
Q 003076 181 QI-E-NEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPW 217 (850)
Q Consensus 181 Qi-E-NEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~ 217 (850)
+ + -+|... ..+...-+.+.+.|++++...+-++.+
T Consensus 137 -~~DG~~~~g~-~~~~~a~~rl~esL~eI~~~~~~~v~~ 173 (378)
T TIGR02635 137 -LADGTNYPGQ-DDFRSRKDRLEESLAEVYEHLGADMRL 173 (378)
T ss_pred -cCCcCcCCcc-cCHHHHHHHHHHHHHHHHHhCcCCCEE
Confidence 2 1 112111 011222345566677777544334433
No 224
>PTZ00333 triosephosphate isomerase; Provisional
Probab=20.79 E-value=1.8e+02 Score=31.80 Aligned_cols=48 Identities=23% Similarity=0.209 Sum_probs=39.3
Q ss_pred HHHHHCCCCEEEEcccCCccCCCCceeeeeccchHHHHHHHHHHcCcEEEEecC
Q 003076 65 RKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (850)
Q Consensus 65 ~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~la~~~gL~vilrpG 118 (850)
.++|++|++.|-+ -|..++..|.= .+..+.+=++.|.++||.+|++.|
T Consensus 83 ~mL~d~G~~~vii-----GHSERR~~f~E-td~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 83 EMLKDLGINWTIL-----GHSERRQYFGE-TNEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred HHHHHcCCCEEEE-----CcccccCcCCC-CcHHHHHHHHHHHHCCCEEEEEcC
Confidence 5799999999988 57666666642 345788889999999999999988
No 225
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=20.21 E-value=2.8e+02 Score=30.61 Aligned_cols=61 Identities=20% Similarity=0.321 Sum_probs=44.0
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCccCCCCceeeeec---cchHHHHHHHHHHcCcEEEEe
Q 003076 55 STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEG---SYDLVRFIKTVQRVGLYAHLR 116 (850)
Q Consensus 55 ~~~~~W~~~l~k~ka~G~NtV~~yv~Wn~hEp~~G~fdF~g---~~dl~~fl~la~~~gL~vilr 116 (850)
..-+.-++-+..+.++|+.-|-+=..|.. .-....+||+. ..||.++++-|++.|..|+|+
T Consensus 29 ~~t~~~k~yIDfAa~~G~eYvlvD~GW~~-~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw 92 (273)
T PF10566_consen 29 ATTETQKRYIDFAAEMGIEYVLVDAGWYG-WEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLW 92 (273)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEEBTTCCG-S--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecccccc-ccccccccccccCCccCHHHHHHHHHHcCCCEEEE
Confidence 36677888999999999999999888876 22345667753 469999999999999999988
Done!