Query 003077
Match_columns 850
No_of_seqs 440 out of 1897
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 16:34:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003077.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003077hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10314 putative acyltransfer 99.2 5.9E-11 1.3E-15 117.5 10.0 82 739-821 51-135 (153)
2 PF13508 Acetyltransf_7: Acety 99.1 5.7E-10 1.2E-14 97.3 11.0 77 736-817 3-79 (79)
3 COG1246 ArgA N-acetylglutamate 99.1 1.7E-10 3.7E-15 113.7 7.5 90 733-826 39-129 (153)
4 PF00583 Acetyltransf_1: Acety 99.1 9.4E-10 2E-14 95.3 10.3 74 742-816 2-83 (83)
5 KOG0956 PHD finger protein AF1 99.1 8E-11 1.7E-15 135.2 4.4 133 509-645 6-189 (900)
6 KOG1244 Predicted transcriptio 99.0 7.1E-11 1.5E-15 123.7 1.8 93 508-636 224-331 (336)
7 PF13673 Acetyltransf_10: Acet 99.0 2.8E-09 6.1E-14 98.1 10.6 74 736-815 44-117 (117)
8 PTZ00330 acetyltransferase; Pr 98.9 8.3E-09 1.8E-13 99.0 10.7 82 738-820 54-141 (147)
9 PRK10146 aminoalkylphosphonic 98.9 6E-09 1.3E-13 99.6 9.1 80 739-819 50-137 (144)
10 PF15446 zf-PHD-like: PHD/FYVE 98.9 2.8E-09 6.2E-14 105.6 6.4 95 510-615 1-143 (175)
11 cd02169 Citrate_lyase_ligase C 98.8 9.8E-09 2.1E-13 112.4 9.7 73 741-819 11-83 (297)
12 PLN02706 glucosamine 6-phospha 98.8 1.9E-08 4.1E-13 97.5 10.7 82 737-819 54-143 (150)
13 KOG1512 PHD Zn-finger protein 98.8 1.1E-09 2.4E-14 115.4 1.9 91 507-634 257-361 (381)
14 PRK07757 acetyltransferase; Pr 98.8 1.7E-08 3.6E-13 98.1 9.5 82 740-824 45-126 (152)
15 PRK07922 N-acetylglutamate syn 98.8 1.9E-08 4.2E-13 101.0 10.0 79 739-820 48-127 (169)
16 KOG0383 Predicted helicase [Ge 98.8 2.5E-09 5.5E-14 126.8 3.7 147 525-695 1-155 (696)
17 PRK03624 putative acetyltransf 98.8 2.1E-08 4.6E-13 94.1 8.8 83 737-821 46-131 (140)
18 PLN02825 amino-acid N-acetyltr 98.8 2.4E-08 5.1E-13 116.4 10.8 88 739-828 410-498 (515)
19 PF13527 Acetyltransf_9: Acety 98.8 5.8E-08 1.2E-12 91.2 11.0 79 737-818 42-127 (127)
20 TIGR00124 cit_ly_ligase [citra 98.7 2.7E-08 5.9E-13 110.5 8.3 82 735-822 30-111 (332)
21 TIGR01890 N-Ac-Glu-synth amino 98.7 5.2E-08 1.1E-12 111.7 10.5 84 740-825 326-410 (429)
22 COG2153 ElaA Predicted acyltra 98.7 4.3E-08 9.2E-13 95.6 7.7 84 739-823 52-139 (155)
23 TIGR02382 wecD_rffC TDP-D-fuco 98.7 1E-07 2.3E-12 97.0 10.0 80 740-820 103-185 (191)
24 PRK10975 TDP-fucosamine acetyl 98.7 1.1E-07 2.3E-12 97.0 10.0 83 737-820 103-188 (194)
25 TIGR01575 rimI ribosomal-prote 98.6 1.5E-07 3.2E-12 87.6 10.1 81 739-821 34-117 (131)
26 COG5141 PHD zinc finger-contai 98.6 8.5E-09 1.8E-13 115.3 1.3 106 506-620 191-342 (669)
27 KOG4323 Polycomb-like PHD Zn-f 98.6 2.2E-08 4.8E-13 113.5 4.6 142 506-653 81-241 (464)
28 PRK09491 rimI ribosomal-protei 98.6 2.6E-07 5.6E-12 89.2 11.0 85 735-821 39-126 (146)
29 PRK05279 N-acetylglutamate syn 98.6 1.4E-07 3E-12 108.6 10.6 84 739-824 337-421 (441)
30 PRK12308 bifunctional arginino 98.6 1.2E-07 2.7E-12 113.3 10.0 83 739-824 506-588 (614)
31 TIGR03827 GNAT_ablB putative b 98.6 1.8E-07 4E-12 100.5 9.8 85 735-820 157-245 (266)
32 PRK13688 hypothetical protein; 98.6 2.4E-07 5.2E-12 92.5 9.2 77 739-821 48-134 (156)
33 KOG0955 PHD finger protein BR1 98.5 3.7E-08 8E-13 121.1 3.5 107 504-618 215-367 (1051)
34 KOG4299 PHD Zn-finger protein 98.5 6.3E-08 1.4E-12 112.1 4.8 46 507-552 252-304 (613)
35 PRK10140 putative acetyltransf 98.5 5.1E-07 1.1E-11 87.7 10.3 84 736-821 51-142 (162)
36 PRK09831 putative acyltransfer 98.5 3.1E-07 6.7E-12 89.3 8.2 73 739-822 56-128 (147)
37 KOG3139 N-acetyltransferase [G 98.5 5.5E-07 1.2E-11 89.4 9.9 85 737-822 57-148 (165)
38 PHA00673 acetyltransferase dom 98.4 1.6E-06 3.4E-11 86.5 10.8 86 735-821 54-147 (154)
39 TIGR02406 ectoine_EctA L-2,4-d 98.4 1.4E-06 3E-11 86.4 9.1 83 737-820 40-128 (157)
40 PF13420 Acetyltransf_4: Acety 98.4 2.9E-06 6.3E-11 82.2 10.8 83 736-820 50-139 (155)
41 KOG3396 Glucosamine-phosphate 98.3 1.5E-06 3.3E-11 83.9 8.1 84 736-820 53-144 (150)
42 KOG4443 Putative transcription 98.3 1.9E-07 4.1E-12 108.4 2.1 87 508-629 18-112 (694)
43 KOG4299 PHD Zn-finger protein 98.3 4E-07 8.6E-12 105.6 4.2 50 577-635 255-304 (613)
44 COG0456 RimI Acetyltransferase 98.3 2.9E-06 6.4E-11 83.7 9.7 76 746-822 72-156 (177)
45 PHA01807 hypothetical protein 98.3 1.9E-06 4.1E-11 86.0 8.3 83 736-821 53-142 (153)
46 TIGR03448 mycothiol_MshD mycot 98.3 2.4E-06 5.3E-11 92.0 9.8 76 744-820 208-288 (292)
47 TIGR03448 mycothiol_MshD mycot 98.3 2.7E-06 5.9E-11 91.6 10.1 81 737-820 47-128 (292)
48 PF08445 FR47: FR47-like prote 98.3 3.1E-06 6.8E-11 76.2 8.6 77 742-820 4-82 (86)
49 PRK10514 putative acetyltransf 98.3 2.7E-06 5.9E-11 81.7 8.6 86 742-835 56-141 (145)
50 TIGR03103 trio_acet_GNAT GNAT- 98.2 3.7E-06 8E-11 99.5 10.7 85 735-820 122-217 (547)
51 PF13523 Acetyltransf_8: Acety 98.2 9.8E-06 2.1E-10 78.8 10.8 88 734-822 46-143 (152)
52 PRK10562 putative acetyltransf 98.2 6.8E-06 1.5E-10 79.5 8.6 77 738-821 50-126 (145)
53 PRK01346 hypothetical protein; 98.2 7.1E-06 1.5E-10 93.2 10.0 81 738-821 49-137 (411)
54 KOG0383 Predicted helicase [Ge 98.1 5.5E-07 1.2E-11 107.4 0.8 48 505-552 44-93 (696)
55 KOG0954 PHD finger protein [Ge 98.1 5.4E-07 1.2E-11 105.3 0.7 103 506-618 269-417 (893)
56 TIGR01211 ELP3 histone acetylt 98.1 7.5E-06 1.6E-10 96.1 9.6 76 744-820 422-516 (522)
57 cd04301 NAT_SF N-Acyltransfera 98.1 1.2E-05 2.6E-10 63.7 8.0 61 739-799 2-64 (65)
58 PRK15130 spermidine N1-acetylt 98.1 1.4E-05 3.1E-10 80.4 10.3 83 737-821 58-146 (186)
59 TIGR03585 PseH pseudaminic aci 98.1 2.7E-05 5.8E-10 75.4 10.7 81 739-822 54-140 (156)
60 TIGR01686 FkbH FkbH-like domai 98.0 1.8E-05 3.9E-10 87.5 9.9 82 735-818 230-319 (320)
61 KOG3397 Acetyltransferases [Ge 97.9 1.3E-05 2.8E-10 80.4 6.0 79 743-823 64-144 (225)
62 COG3393 Predicted acetyltransf 97.9 2.4E-05 5.1E-10 83.6 8.4 84 736-820 177-262 (268)
63 smart00258 SAND SAND domain. 97.9 4.4E-06 9.6E-11 73.1 2.1 62 432-494 5-68 (73)
64 KOG1244 Predicted transcriptio 97.9 2.7E-06 5.8E-11 89.9 0.8 45 507-551 280-329 (336)
65 KOG0825 PHD Zn-finger protein 97.9 3.8E-06 8.3E-11 98.6 1.9 55 572-637 212-267 (1134)
66 PRK10809 ribosomal-protein-S5- 97.8 8.1E-05 1.8E-09 75.5 9.7 84 736-821 77-167 (194)
67 PF00628 PHD: PHD-finger; Int 97.8 5.1E-06 1.1E-10 67.3 0.6 49 577-634 1-49 (51)
68 COG3153 Predicted acetyltransf 97.8 7.5E-05 1.6E-09 75.8 8.9 82 738-823 48-134 (171)
69 KOG1473 Nucleosome remodeling 97.8 5.3E-06 1.1E-10 100.7 0.7 123 506-640 342-483 (1414)
70 PRK10151 ribosomal-protein-L7/ 97.8 0.00014 3.1E-09 72.7 10.8 81 739-821 70-156 (179)
71 PF13302 Acetyltransf_3: Acety 97.8 0.00025 5.4E-09 67.2 11.2 80 735-816 55-142 (142)
72 smart00249 PHD PHD zinc finger 97.8 2.8E-05 6.2E-10 60.5 3.9 45 577-630 1-45 (47)
73 PF13718 GNAT_acetyltr_2: GNAT 97.7 0.00019 4.1E-09 74.5 10.4 87 734-821 25-177 (196)
74 KOG1512 PHD Zn-finger protein 97.6 1.4E-05 3.1E-10 85.0 0.5 82 446-550 275-360 (381)
75 PF00628 PHD: PHD-finger; Int 97.6 2.5E-05 5.4E-10 63.2 1.2 42 510-551 1-49 (51)
76 COG1247 Sortase and related ac 97.6 0.00044 9.5E-09 70.2 10.3 109 731-845 47-164 (169)
77 smart00249 PHD PHD zinc finger 97.6 5.7E-05 1.2E-09 58.8 3.1 41 510-550 1-47 (47)
78 KOG3216 Diamine acetyltransfer 97.5 0.00085 1.8E-08 66.6 10.2 88 732-820 50-146 (163)
79 KOG4443 Putative transcription 97.4 5.4E-05 1.2E-09 88.6 1.9 102 509-613 69-180 (694)
80 PF01342 SAND: SAND domain; I 97.3 1.2E-05 2.6E-10 72.3 -3.8 63 431-494 12-77 (82)
81 KOG0825 PHD Zn-finger protein 97.2 0.00015 3.3E-09 85.7 2.4 46 507-552 214-265 (1134)
82 KOG1973 Chromatin remodeling p 97.1 0.00018 3.8E-09 78.4 1.5 42 510-552 223-267 (274)
83 COG3053 CitC Citrate lyase syn 97.0 0.0021 4.5E-08 69.7 8.5 78 737-820 37-115 (352)
84 PF12746 GNAT_acetyltran: GNAT 96.8 0.0066 1.4E-07 66.0 10.5 79 740-820 169-247 (265)
85 KOG1973 Chromatin remodeling p 96.8 0.00044 9.5E-09 75.4 1.3 36 593-635 229-267 (274)
86 KOG3138 Predicted N-acetyltran 96.6 0.0017 3.7E-08 66.9 4.1 61 760-821 89-153 (187)
87 COG1670 RimL Acetyltransferase 96.6 0.012 2.7E-07 57.5 10.0 89 734-824 64-162 (187)
88 PF14542 Acetyltransf_CG: GCN5 96.6 0.008 1.7E-07 53.5 7.7 69 739-810 2-70 (78)
89 COG2388 Predicted acetyltransf 96.6 0.007 1.5E-07 56.5 7.6 73 734-810 15-87 (99)
90 COG5034 TNG2 Chromatin remodel 96.6 0.00093 2E-08 70.9 2.0 44 577-635 223-269 (271)
91 PF12568 DUF3749: Acetyltransf 96.6 0.015 3.2E-07 56.5 10.0 80 736-820 40-125 (128)
92 COG0454 WecD Histone acetyltra 96.5 0.0033 7.2E-08 53.1 4.3 44 766-815 87-130 (156)
93 COG1444 Predicted P-loop ATPas 96.4 0.0033 7.3E-08 76.3 5.3 60 761-821 532-592 (758)
94 KOG4144 Arylalkylamine N-acety 96.4 0.0028 6E-08 63.0 3.5 62 758-820 99-161 (190)
95 PF08444 Gly_acyl_tr_C: Aralky 96.4 0.0061 1.3E-07 55.7 5.3 74 741-819 4-79 (89)
96 KOG2488 Acetyltransferase (GNA 96.3 0.0086 1.9E-07 61.5 6.9 83 737-820 94-182 (202)
97 COG5034 TNG2 Chromatin remodel 96.2 0.0023 4.9E-08 68.0 1.8 45 506-551 219-268 (271)
98 KOG0957 PHD finger protein [Ge 96.1 0.003 6.5E-08 72.0 2.1 108 505-616 116-277 (707)
99 KOG0957 PHD finger protein [Ge 96.0 0.0023 5E-08 72.9 1.1 47 576-633 545-595 (707)
100 COG4552 Eis Predicted acetyltr 96.0 0.0089 1.9E-07 66.5 5.3 87 729-820 34-127 (389)
101 PF13831 PHD_2: PHD-finger; PD 95.9 0.0015 3.2E-08 50.0 -0.7 34 518-551 2-36 (36)
102 KOG3235 Subunit of the major N 95.9 0.026 5.6E-07 56.6 7.4 81 740-820 45-135 (193)
103 KOG3234 Acetyltransferase, (GN 95.3 0.05 1.1E-06 54.6 7.0 59 759-818 68-129 (173)
104 KOG0955 PHD finger protein BR1 95.2 0.014 3E-07 73.3 3.5 57 573-640 217-273 (1051)
105 cd04718 BAH_plant_2 BAH, or Br 95.1 0.012 2.5E-07 58.6 2.0 24 529-552 1-26 (148)
106 cd04718 BAH_plant_2 BAH, or Br 95.1 0.011 2.5E-07 58.6 1.9 26 605-635 1-26 (148)
107 TIGR03694 exosort_acyl putativ 94.9 0.21 4.5E-06 53.7 11.3 95 725-820 45-200 (241)
108 PF13480 Acetyltransf_6: Acety 94.8 0.23 5E-06 46.7 10.0 68 735-803 70-137 (142)
109 KOG0956 PHD finger protein AF1 94.8 0.014 3.1E-07 69.0 1.9 51 574-635 4-56 (900)
110 COG1243 ELP3 Histone acetyltra 94.6 0.025 5.5E-07 64.9 3.3 51 769-820 459-509 (515)
111 KOG1245 Chromatin remodeling c 94.4 0.011 2.3E-07 76.8 -0.2 53 575-638 1108-1160(1404)
112 KOG4323 Polycomb-like PHD Zn-f 94.2 0.017 3.6E-07 66.7 1.0 44 510-553 170-224 (464)
113 smart00258 SAND SAND domain. 93.8 0.071 1.5E-06 47.1 3.8 52 243-296 17-69 (73)
114 PF00765 Autoind_synth: Autoin 93.3 0.47 1E-05 49.0 9.5 92 725-818 34-153 (182)
115 PF06852 DUF1248: Protein of u 93.1 0.49 1.1E-05 48.9 9.1 83 737-820 48-137 (181)
116 KOG0954 PHD finger protein [Ge 92.5 0.054 1.2E-06 64.8 1.5 51 574-635 270-320 (893)
117 COG5141 PHD zinc finger-contai 92.4 0.051 1.1E-06 62.3 1.1 47 576-633 194-240 (669)
118 KOG1245 Chromatin remodeling c 92.0 0.038 8.2E-07 71.9 -0.7 48 505-552 1105-1157(1404)
119 PRK13834 putative autoinducer 91.7 0.93 2E-05 47.7 9.4 95 725-820 42-167 (207)
120 PF01342 SAND: SAND domain; I 91.4 0.076 1.6E-06 48.0 0.8 55 240-296 18-78 (82)
121 COG3981 Predicted acetyltransf 91.2 0.34 7.4E-06 49.4 5.3 66 736-803 70-140 (174)
122 cd04264 DUF619-NAGS DUF619 dom 88.5 0.92 2E-05 42.5 5.5 48 742-789 14-63 (99)
123 PF13832 zf-HC5HC2H_2: PHD-zin 88.0 0.42 9.2E-06 44.8 3.0 33 576-616 56-90 (110)
124 PF13831 PHD_2: PHD-finger; PD 87.1 0.088 1.9E-06 40.3 -1.7 33 594-633 2-35 (36)
125 COG3818 Predicted acetyltransf 86.5 1.8 3.8E-05 42.6 6.2 61 765-825 89-153 (167)
126 KOG2752 Uncharacterized conser 83.5 1.1 2.4E-05 49.5 3.7 101 510-614 57-167 (345)
127 KOG4135 Predicted phosphogluco 81.8 2.7 5.9E-05 42.1 5.4 60 760-820 107-170 (185)
128 cd04265 DUF619-NAGS-U DUF619 d 81.3 2.9 6.2E-05 39.2 5.2 48 742-789 15-63 (99)
129 COG5628 Predicted acetyltransf 81.3 8.9 0.00019 37.4 8.4 84 738-826 39-130 (143)
130 PF02474 NodA: Nodulation prot 80.7 2.6 5.6E-05 43.3 4.9 53 760-814 85-137 (196)
131 COG3916 LasI N-acyl-L-homoseri 80.4 8.6 0.00019 40.7 8.8 84 733-817 50-160 (209)
132 TIGR03019 pepcterm_femAB FemAB 80.4 4.8 0.0001 44.8 7.5 81 739-820 198-281 (330)
133 PF07897 DUF1675: Protein of u 78.3 2.4 5.2E-05 46.8 4.2 65 214-282 210-283 (284)
134 KOG2535 RNA polymerase II elon 76.8 2.8 6E-05 47.1 4.1 50 771-821 498-548 (554)
135 PF14446 Prok-RING_1: Prokaryo 74.5 1.5 3.3E-05 36.7 1.1 30 508-537 5-38 (54)
136 KOG1473 Nucleosome remodeling 73.9 1.8 3.8E-05 54.7 1.9 45 576-634 345-389 (1414)
137 PF04377 ATE_C: Arginine-tRNA- 70.3 20 0.00042 35.3 7.8 64 735-799 38-101 (128)
138 KOG1081 Transcription factor N 68.4 5 0.00011 47.3 4.0 48 504-552 85-132 (463)
139 PF13771 zf-HC5HC2H: PHD-like 67.8 2.3 5E-05 38.2 0.8 33 576-616 37-71 (90)
140 PF13880 Acetyltransf_13: ESCO 66.4 4.7 0.0001 35.6 2.4 27 762-788 7-33 (70)
141 PF14446 Prok-RING_1: Prokaryo 63.3 4.2 9.1E-05 34.2 1.4 37 576-617 6-42 (54)
142 PF01853 MOZ_SAS: MOZ/SAS fami 63.1 29 0.00063 36.3 7.8 33 761-793 81-113 (188)
143 PF07227 DUF1423: Protein of u 62.4 9.7 0.00021 44.4 4.6 64 577-644 130-203 (446)
144 PF07897 DUF1675: Protein of u 61.6 5.3 0.00012 44.1 2.3 32 450-481 252-283 (284)
145 PF01233 NMT: Myristoyl-CoA:pr 61.0 31 0.00067 35.3 7.4 55 744-798 87-148 (162)
146 PF12861 zf-Apc11: Anaphase-pr 60.1 3.6 7.8E-05 37.6 0.6 45 507-552 20-79 (85)
147 PF13444 Acetyltransf_5: Acety 59.7 17 0.00037 33.5 5.0 25 758-782 76-100 (101)
148 KOG1701 Focal adhesion adaptor 58.5 12 0.00025 43.4 4.3 36 577-614 396-431 (468)
149 PRK00756 acyltransferase NodA; 58.2 17 0.00036 37.4 4.9 61 738-799 56-123 (196)
150 PRK14852 hypothetical protein; 57.2 29 0.00063 44.6 7.8 65 757-821 118-182 (989)
151 PRK01305 arginyl-tRNA-protein 57.1 53 0.0011 35.7 8.8 58 741-799 149-206 (240)
152 PF00385 Chromo: Chromo (CHRro 52.7 2.7 5.9E-05 34.3 -1.3 31 674-704 20-50 (55)
153 PF15446 zf-PHD-like: PHD/FYVE 52.7 8.8 0.00019 39.3 2.0 59 577-639 1-63 (175)
154 PLN03238 probable histone acet 52.6 30 0.00065 38.4 6.2 32 762-793 157-188 (290)
155 PF13771 zf-HC5HC2H: PHD-like 46.8 19 0.00041 32.2 3.1 30 508-537 36-68 (90)
156 KOG2747 Histone acetyltransfer 44.6 20 0.00043 41.4 3.3 25 763-787 263-287 (396)
157 KOG1829 Uncharacterized conser 44.5 7.1 0.00015 47.1 -0.2 51 577-640 513-563 (580)
158 KOG4628 Predicted E3 ubiquitin 42.7 16 0.00035 41.6 2.3 43 509-552 230-275 (348)
159 KOG2036 Predicted P-loop ATPas 41.9 23 0.0005 43.5 3.5 29 761-789 615-643 (1011)
160 KOG2779 N-myristoyl transferas 40.9 42 0.00091 38.3 5.1 79 735-813 133-226 (421)
161 PF13832 zf-HC5HC2H_2: PHD-zin 40.4 13 0.00028 34.7 1.0 31 507-537 54-87 (110)
162 PLN00104 MYST -like histone ac 40.3 30 0.00066 40.6 4.1 31 762-792 308-338 (450)
163 PLN03239 histone acetyltransfe 39.9 55 0.0012 37.4 5.9 32 762-793 215-246 (351)
164 PTZ00064 histone acetyltransfe 39.8 45 0.00097 39.7 5.3 32 762-793 386-417 (552)
165 PF13639 zf-RING_2: Ring finge 39.6 3.4 7.4E-05 32.4 -2.6 40 509-551 1-44 (44)
166 TIGR03244 arg_catab_AstA argin 39.3 55 0.0012 37.3 5.8 50 734-783 53-140 (336)
167 PF04958 AstA: Arginine N-succ 38.0 42 0.0009 38.3 4.6 84 735-819 58-187 (342)
168 PF10080 DUF2318: Predicted me 37.8 69 0.0015 30.4 5.3 69 412-488 3-87 (102)
169 PF13901 DUF4206: Domain of un 36.9 27 0.00059 36.7 2.8 36 577-613 154-189 (202)
170 PF12261 T_hemolysin: Thermost 36.6 89 0.0019 32.5 6.4 55 759-818 86-140 (179)
171 TIGR03245 arg_AOST_alph argini 36.1 60 0.0013 36.9 5.4 50 734-783 54-141 (336)
172 PF11793 FANCL_C: FANCL C-term 35.9 19 0.00042 31.5 1.3 33 577-612 4-38 (70)
173 TIGR03243 arg_catab_AOST argin 35.8 63 0.0014 36.8 5.5 50 734-783 53-140 (335)
174 PRK10456 arginine succinyltran 35.1 61 0.0013 37.0 5.3 50 734-783 55-142 (344)
175 KOG1428 Inhibitor of type V ad 34.8 8.2 0.00018 50.1 -1.6 50 504-553 3482-3542(3738)
176 PF09924 DUF2156: Uncharacteri 34.3 2.4E+02 0.0051 30.9 9.7 69 734-803 178-248 (299)
177 KOG1632 Uncharacterized PHD Zn 33.0 25 0.00054 40.1 1.9 47 595-643 74-120 (345)
178 cd00024 CHROMO Chromatin organ 32.5 16 0.00034 29.4 0.2 24 673-696 20-43 (55)
179 TIGR03827 GNAT_ablB putative b 32.2 61 0.0013 35.0 4.7 44 776-820 21-64 (266)
180 PF13901 DUF4206: Domain of un 31.7 34 0.00073 36.0 2.5 38 507-551 151-196 (202)
181 KOG1642 Ribonuclease, T2 famil 31.5 29 0.00063 37.8 2.0 61 260-320 116-191 (263)
182 PF04216 FdhE: Protein involve 30.9 29 0.00062 38.3 1.9 37 505-551 169-218 (290)
183 COG5027 SAS2 Histone acetyltra 30.8 23 0.0005 40.1 1.1 24 761-784 263-286 (395)
184 KOG1246 DNA-binding protein ju 29.5 36 0.00078 43.5 2.7 46 507-552 154-203 (904)
185 KOG3612 PHD Zn-finger protein 29.1 44 0.00095 40.0 3.0 47 506-552 58-107 (588)
186 PF07649 C1_3: C1-like domain; 29.1 20 0.00042 26.1 0.1 28 577-610 2-29 (30)
187 COG2401 ABC-type ATPase fused 28.2 25 0.00054 41.1 0.9 62 757-819 238-307 (593)
188 PF11793 FANCL_C: FANCL C-term 27.7 31 0.00066 30.2 1.1 29 509-537 3-39 (70)
189 PTZ00062 glutaredoxin; Provisi 27.6 2.5E+02 0.0054 29.7 8.1 62 682-760 21-83 (204)
190 PF14545 DBB: Dof, BCAP, and B 26.7 2E+02 0.0043 29.0 6.7 61 734-827 65-125 (142)
191 PF12861 zf-Apc11: Anaphase-pr 26.3 24 0.00052 32.4 0.2 29 577-612 34-62 (85)
192 PF13066 DUF3929: Protein of u 25.1 66 0.0014 27.1 2.5 30 283-312 4-33 (65)
193 PF05301 Mec-17: Touch recepto 25.1 61 0.0013 31.6 2.7 23 766-788 52-74 (120)
194 KOG0804 Cytoplasmic Zn-finger 24.2 33 0.00071 40.1 0.8 70 507-603 174-247 (493)
195 KOG1734 Predicted RING-contain 23.0 23 0.0005 38.9 -0.6 34 504-537 220-263 (328)
196 cd04266 DUF619-NAGS-FABP DUF61 23.0 1.9E+02 0.0041 27.8 5.5 46 742-787 15-67 (108)
197 KOG3612 PHD Zn-finger protein 22.2 52 0.0011 39.4 2.0 39 593-635 69-107 (588)
198 PRK03564 formate dehydrogenase 22.1 1.2E+02 0.0027 34.1 4.8 12 505-516 184-195 (309)
199 PF12678 zf-rbx1: RING-H2 zinc 21.8 25 0.00055 30.9 -0.5 26 524-551 48-73 (73)
200 cd03173 DUF619-like DUF619 dom 21.7 2.2E+02 0.0048 26.8 5.7 48 742-789 15-62 (98)
201 PRK09555 feoA ferrous iron tra 21.2 72 0.0016 28.3 2.2 25 212-236 20-44 (74)
202 KOG3576 Ovo and related transc 21.1 20 0.00044 37.8 -1.4 17 595-611 172-188 (267)
203 PF04393 DUF535: Protein of un 20.2 3.9E+02 0.0085 29.7 8.2 70 729-798 119-205 (288)
No 1
>PRK10314 putative acyltransferase; Provisional
Probab=99.20 E-value=5.9e-11 Score=117.47 Aligned_cols=82 Identities=15% Similarity=0.105 Sum_probs=73.1
Q ss_pred EEEEeCCEEEEeEEEEEEcC--ceEEEeEeEeeccccccChhHHHHHHHHHHHhhC-CccEEEecchhhHHHHHHhccCc
Q 003077 739 VILTVKSVVVSAGLLRIFGR--EVAELPLVATCREYQGKGCFQALFSCIERLLCSL-NVENLVLPAAEKAESIWTKKFGF 815 (850)
Q Consensus 739 ~vl~~~~~~V~aA~lri~g~--~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~l-gv~~LvL~A~~~A~~~w~~kfGF 815 (850)
++++.++++||+|+++..+. ..++|-+|||+++|||+|+|++||+.+++.++.. +...++|.|+..|++||+ ||||
T Consensus 51 ~~~~~~~~~vg~~r~~~~~~~~~~~~i~rv~V~~~~rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a~~~a~~fY~-k~GF 129 (153)
T PRK10314 51 ILGWKNDELVAYARILKSDDDLEPVVIGRVIVSEALRGEKVGQQLMSKTLESCTRHWPDKPVYLGAQAHLQNFYQ-SFGF 129 (153)
T ss_pred EEEEECCEEEEEEEEecCCCCCCCEEEEEEEECHHHhCCCHHHHHHHHHHHHHHHHCCCCcEEEehHHHHHHHHH-HCCC
Confidence 45578999999999987543 3689999999999999999999999999998875 788999999999999999 9999
Q ss_pred EEcCHH
Q 003077 816 RKMSRE 821 (850)
Q Consensus 816 ~~i~~~ 821 (850)
+.+++.
T Consensus 130 ~~~g~~ 135 (153)
T PRK10314 130 IPVTEV 135 (153)
T ss_pred EECCCc
Confidence 999974
No 2
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.11 E-value=5.7e-10 Score=97.34 Aligned_cols=77 Identities=21% Similarity=0.194 Sum_probs=66.9
Q ss_pred eEEEEEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCc
Q 003077 736 MYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGF 815 (850)
Q Consensus 736 fy~~vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~~A~~~w~~kfGF 815 (850)
-+.+++++++++||++.+...+ +.+.|..+||+|+|||+|+|+.||..+++.+.. ..++|.+.+.+.+||+ ++||
T Consensus 3 ~~~~~~~~~~~ivG~~~~~~~~-~~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~---~~i~l~~~~~~~~fY~-~~GF 77 (79)
T PF13508_consen 3 ERFFVAEDDGEIVGFIRLWPNE-DFAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKS---KKIFLFTNPAAIKFYE-KLGF 77 (79)
T ss_dssp EEEEEEEETTEEEEEEEEEETT-TEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTC---SEEEEEEEHHHHHHHH-HTTE
T ss_pred cEEEEEEECCEEEEEEEEEEcC-CEEEEEEEEECHHHcCCCHHHHHHHHHHHHcCC---CcEEEEEcHHHHHHHH-HCcC
Confidence 3567789999999999996544 489999999999999999999999999888854 5678888899999999 9999
Q ss_pred EE
Q 003077 816 RK 817 (850)
Q Consensus 816 ~~ 817 (850)
++
T Consensus 78 ~~ 79 (79)
T PF13508_consen 78 EE 79 (79)
T ss_dssp EE
T ss_pred CC
Confidence 85
No 3
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.09 E-value=1.7e-10 Score=113.68 Aligned_cols=90 Identities=16% Similarity=0.299 Sum_probs=77.9
Q ss_pred ecceEEEEEEeCCEEEEeEEEE-EEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHh
Q 003077 733 FGGMYSVILTVKSVVVSAGLLR-IFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTK 811 (850)
Q Consensus 733 ~~Gfy~~vl~~~~~~V~aA~lr-i~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~~A~~~w~~ 811 (850)
+..|+.+ +.+|.+||||.+. +.+.+++||.-|||+|+|||+|+|..|+..|+..|+++|++++++.|. . .+-|..
T Consensus 39 i~dF~i~--E~~g~viGC~aL~~~~~~~~gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar~~gi~~lf~LTt-~-~~~~F~ 114 (153)
T COG1246 39 IDDFTII--ERDGKVIGCAALHPVLEEDLGELRSLAVHPDYRGSGRGERLLERLLADARELGIKELFVLTT-R-SPEFFA 114 (153)
T ss_pred Hhhheee--eeCCcEEEEEeecccCccCeeeEEEEEECHHhcCCCcHHHHHHHHHHHHHHcCCceeeeeec-c-cHHHHH
Confidence 3555544 7899999999999 789999999999999999999999999999999999999999999985 3 344555
Q ss_pred ccCcEEcCHHHHHhh
Q 003077 812 KFGFRKMSRERLLKY 826 (850)
Q Consensus 812 kfGF~~i~~~~~~~~ 826 (850)
++||+.++.+++..-
T Consensus 115 ~~GF~~vd~~~LP~~ 129 (153)
T COG1246 115 ERGFTRVDKDELPEE 129 (153)
T ss_pred HcCCeECccccCCHH
Confidence 999999999766543
No 4
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=99.07 E-value=9.4e-10 Score=95.32 Aligned_cols=74 Identities=22% Similarity=0.279 Sum_probs=68.3
Q ss_pred EeCCEEEEeEEEEEEcC-----ceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecch---hhHHHHHHhcc
Q 003077 742 TVKSVVVSAGLLRIFGR-----EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA---EKAESIWTKKF 813 (850)
Q Consensus 742 ~~~~~~V~aA~lri~g~-----~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~---~~A~~~w~~kf 813 (850)
+++|+|||++.+++... ..+.|..++|+++|||+|+|+.||+.+++.+++.|+..|.+.+. ..+..||+ |+
T Consensus 2 ~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~-k~ 80 (83)
T PF00583_consen 2 EEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYE-KL 80 (83)
T ss_dssp EETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHH-HT
T ss_pred cCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHH-Hc
Confidence 68999999999999876 59999999999999999999999999999999999999988777 45669999 99
Q ss_pred CcE
Q 003077 814 GFR 816 (850)
Q Consensus 814 GF~ 816 (850)
||+
T Consensus 81 Gf~ 83 (83)
T PF00583_consen 81 GFE 83 (83)
T ss_dssp TEE
T ss_pred CCC
Confidence 996
No 5
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=99.06 E-value=8e-11 Score=135.21 Aligned_cols=133 Identities=25% Similarity=0.559 Sum_probs=92.4
Q ss_pred cccccccCC-----CceeeeCC--CCCccCccccCCCCCCCCCcccccCCC-----CCCCC-------c-----------
Q 003077 509 DMCHVCGDG-----ENLLLCNG--CPLAFHAACLDPLLIPESGWRCPNCRQ-----GHSSS-------M----------- 558 (850)
Q Consensus 509 d~C~vCgdg-----G~Ll~Cd~--C~~afH~~Cl~p~~vp~g~W~C~~C~~-----~~~~e-------a----------- 558 (850)
.-|.||.|. ..|++||+ |.-+.|+.|+++..+|.|.|||+.|.. .+.++ +
T Consensus 6 GGCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWAH 85 (900)
T KOG0956|consen 6 GGCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWAH 85 (900)
T ss_pred cceeeecCcCCCccCceeeecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCcccceecccCCCceE
Confidence 359999875 48999998 999999999999999999999999965 11111 0
Q ss_pred -----------------cccccccCCccCCCCCccccccCCCCcCCCCccCCCceeecC--CCCCccCCCcCCCCCCCCc
Q 003077 559 -----------------SRSVDLKGGLEAPGAEVGGCVICRSHDFSAATFDDRTVIYCD--QCEKEFHVGCLRKNGLCDL 619 (850)
Q Consensus 559 -----------------~dpI~~~r~~~~~~~e~~~C~iC~~~d~~~~~~d~~~LL~Cd--qC~r~fHv~CL~~~g~~~L 619 (850)
++||-+..+..+.. ...||||.+.+... ....+..|.|. .|.++||+.|.+..|+..-
T Consensus 86 VVCALYIPEVrFgNV~TMEPIiLq~VP~dRf--nKtCYIC~E~Grpn-kA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCE 162 (900)
T KOG0956|consen 86 VVCALYIPEVRFGNVHTMEPIILQDVPHDRF--NKTCYICNEEGRPN-KAAKGACMTCNKSGCKQAFHVTCAQRAGLLCE 162 (900)
T ss_pred EEEEeeccceeecccccccceeeccCchhhh--cceeeeecccCCcc-ccccccceecccccchhhhhhhHhhhhcccee
Confidence 33432211111111 14799999865321 12357789998 8999999999988776443
Q ss_pred cC-CCCCC-cEecCCchhHHHHHhhhhc
Q 003077 620 KE-IPKDK-WFCCDDCNRIHAALQDFVS 645 (850)
Q Consensus 620 ~e-vP~g~-WfCc~~C~~i~~~LqkLv~ 645 (850)
++ ...++ =|| ..|+..+.+|.+--.
T Consensus 163 E~gn~~dNVKYC-GYCk~HfsKlkk~~~ 189 (900)
T KOG0956|consen 163 EEGNISDNVKYC-GYCKYHFSKLKKSPA 189 (900)
T ss_pred ccccccccceec-hhHHHHHHHhhcCCC
Confidence 33 12233 466 999999999987643
No 6
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=99.03 E-value=7.1e-11 Score=123.67 Aligned_cols=93 Identities=29% Similarity=0.837 Sum_probs=78.0
Q ss_pred ccccccccC----------CCceeeeCCCCCccCccccCCC-----CCCCCCcccccCCCCCCCCccccccccCCccCCC
Q 003077 508 DDMCHVCGD----------GENLLLCNGCPLAFHAACLDPL-----LIPESGWRCPNCRQGHSSSMSRSVDLKGGLEAPG 572 (850)
Q Consensus 508 dd~C~vCgd----------gG~Ll~Cd~C~~afH~~Cl~p~-----~vp~g~W~C~~C~~~~~~ea~dpI~~~r~~~~~~ 572 (850)
..+|..|-. ..+|+.|..|+++=|..||.-. .+-...|+|..|.
T Consensus 224 n~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck--------------------- 282 (336)
T KOG1244|consen 224 NPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECK--------------------- 282 (336)
T ss_pred CcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecc---------------------
Confidence 357777742 3589999999999999999852 4556789999996
Q ss_pred CCccccccCCCCcCCCCccCCCceeecCCCCCccCCCcCCCCCCCCccCCCCCCcEecCCchhH
Q 003077 573 AEVGGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNRI 636 (850)
Q Consensus 573 ~e~~~C~iC~~~d~~~~~~d~~~LL~CdqC~r~fHv~CL~~~g~~~L~evP~g~WfCc~~C~~i 636 (850)
.|.+|+-.+ ++..||.||.|+|.||+.||.| +|.+.|+|.|-| ..|-+.
T Consensus 283 ----~csicgtse------nddqllfcddcdrgyhmyclsp----pm~eppegswsc-~KOG~~ 331 (336)
T KOG1244|consen 283 ----YCSICGTSE------NDDQLLFCDDCDRGYHMYCLSP----PMVEPPEGSWSC-HLCLEE 331 (336)
T ss_pred ----eeccccCcC------CCceeEeecccCCceeeEecCC----CcCCCCCCchhH-HHHHHH
Confidence 899999654 5789999999999999999997 788999999999 777554
No 7
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=98.99 E-value=2.8e-09 Score=98.14 Aligned_cols=74 Identities=23% Similarity=0.349 Sum_probs=65.3
Q ss_pred eEEEEEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCc
Q 003077 736 MYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGF 815 (850)
Q Consensus 736 fy~~vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~~A~~~w~~kfGF 815 (850)
...+|++.++++||.+.++ .-++|..++|+|+|||+|+|++||..+++.|+. |++.|.+.+...|.+||+ ++||
T Consensus 44 ~~~~v~~~~~~ivG~~~~~----~~~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~~~~~a~~~y~-~~GF 117 (117)
T PF13673_consen 44 HTIFVAEEGGEIVGFAWLE----PDGEISHLYVLPEYRGRGIGRALLDAAEKEAKD-GIRRLTVEANERARRFYR-KLGF 117 (117)
T ss_dssp CEEEEEEETTEEEEEEEEE----TCEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTT-TCEEEEEEC-HHHHHHHH-HTT-
T ss_pred CEEEEEEECCEEEEEEEEc----CCCeEEEEEEChhhcCCcHHHHHHHHHHHHHHc-CCcEEEEEeCHHHHHHHH-hCCC
Confidence 5677889999999999986 345699999999999999999999999999988 999999999999999999 9998
No 8
>PTZ00330 acetyltransferase; Provisional
Probab=98.90 E-value=8.3e-09 Score=98.97 Aligned_cols=82 Identities=23% Similarity=0.328 Sum_probs=71.9
Q ss_pred EEEEEeCCEEEEeEEEEEE------cCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHh
Q 003077 738 SVILTVKSVVVSAGLLRIF------GREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTK 811 (850)
Q Consensus 738 ~~vl~~~~~~V~aA~lri~------g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~~A~~~w~~ 811 (850)
.++...+|++||.+.+... +...++|..+.|.++|||+|+|++||..+++.+++.|+.+++|.+...|..||+
T Consensus 54 ~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~~n~~a~~~y~- 132 (147)
T PTZ00330 54 VFVHSPTQRIVGTASLFVEPKFTRGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILDCTEDMVAFYK- 132 (147)
T ss_pred EEEEeCCCEEEEEEEEEeccccccCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEecChHHHHHHH-
Confidence 4444578999999998653 223678999999999999999999999999999999999999999999999999
Q ss_pred ccCcEEcCH
Q 003077 812 KFGFRKMSR 820 (850)
Q Consensus 812 kfGF~~i~~ 820 (850)
++||+....
T Consensus 133 k~GF~~~~~ 141 (147)
T PTZ00330 133 KLGFRACER 141 (147)
T ss_pred HCCCEEece
Confidence 999998873
No 9
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=98.88 E-value=6e-09 Score=99.59 Aligned_cols=80 Identities=14% Similarity=0.100 Sum_probs=69.7
Q ss_pred EEEEeCCEEEEeEEEEEEc-----CceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecch---hhHHHHHH
Q 003077 739 VILTVKSVVVSAGLLRIFG-----REVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA---EKAESIWT 810 (850)
Q Consensus 739 ~vl~~~~~~V~aA~lri~g-----~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~---~~A~~~w~ 810 (850)
+|+..++++||++.++... ...++|..++|.|+|||||+|+.||..+++.++..|+..+.|.+. ..|+.||+
T Consensus 50 ~v~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY~ 129 (144)
T PRK10146 50 HLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYL 129 (144)
T ss_pred EEEEECCEEEEEEEEEecccccccchhheeheeEECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHHH
Confidence 4567899999999987632 225789999999999999999999999999999999999998876 58999999
Q ss_pred hccCcEEcC
Q 003077 811 KKFGFRKMS 819 (850)
Q Consensus 811 ~kfGF~~i~ 819 (850)
++||...+
T Consensus 130 -~~Gf~~~~ 137 (144)
T PRK10146 130 -REGYEQSH 137 (144)
T ss_pred -HcCCchhh
Confidence 99998764
No 10
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=98.87 E-value=2.8e-09 Score=105.60 Aligned_cols=95 Identities=25% Similarity=0.648 Sum_probs=70.8
Q ss_pred cccccc------CCCceeeeCCCCCccCccccCCC--------CCCC--CCcccccCCCCCCCCccccccccCCccCCCC
Q 003077 510 MCHVCG------DGENLLLCNGCPLAFHAACLDPL--------LIPE--SGWRCPNCRQGHSSSMSRSVDLKGGLEAPGA 573 (850)
Q Consensus 510 ~C~vCg------dgG~Ll~Cd~C~~afH~~Cl~p~--------~vp~--g~W~C~~C~~~~~~ea~dpI~~~r~~~~~~~ 573 (850)
.|.+|+ ..|.|++|.+|..+||+.||++. .+.. ...+|++|.. ..+..+...+
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig-----------~~~kKD~~aP 69 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIG-----------IAHKKDPRAP 69 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcC-----------hhhcccCCCC
Confidence 377774 24799999999999999999983 2222 3578999964 2333444566
Q ss_pred CccccccCCCCcCCCCcc--------------------------------CCCceeecCCCCCccCCCcCCCCC
Q 003077 574 EVGGCVICRSHDFSAATF--------------------------------DDRTVIYCDQCEKEFHVGCLRKNG 615 (850)
Q Consensus 574 e~~~C~iC~~~d~~~~~~--------------------------------d~~~LL~CdqC~r~fHv~CL~~~g 615 (850)
..+.|..|++.+.+...| .++.|++|..|.|+||+.+|++.+
T Consensus 70 ~~~~C~~C~~~G~~c~pfr~r~T~kQEe~~ReeNgG~DPit~Vd~~lvnN~~nVLFRC~~C~RawH~~HLP~~~ 143 (175)
T PF15446_consen 70 HHGMCQQCKKPGPSCKPFRPRKTPKQEEKLREENGGVDPITPVDPELVNNPDNVLFRCTSCHRAWHFEHLPPPS 143 (175)
T ss_pred CCCcccccCCCCCCCcccCCCCCcHHHHHHHHHcCCCCCCccCCHHHccChhheEEecCCccceeehhhCCCCc
Confidence 778899998886664444 244799999999999999998753
No 11
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.83 E-value=9.8e-09 Score=112.38 Aligned_cols=73 Identities=21% Similarity=0.335 Sum_probs=67.6
Q ss_pred EEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEEcC
Q 003077 741 LTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRKMS 819 (850)
Q Consensus 741 l~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~~A~~~w~~kfGF~~i~ 819 (850)
..+++++||++++.. .+|..|||+++|||+|+|++||+.+++.+++.|+++++|.+..++.+||+ |+||+.++
T Consensus 11 ~~~~~~iVG~~~l~~-----~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~~~~fYe-k~GF~~~~ 83 (297)
T cd02169 11 FDDAGELIATGSIAG-----NVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPKNAKFFR-GLGFKELA 83 (297)
T ss_pred EEECCEEEEEEEecc-----CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcccHHHHHH-HCCCEEec
Confidence 356799999998852 36899999999999999999999999999999999999999999999999 99999998
No 12
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=98.83 E-value=1.9e-08 Score=97.46 Aligned_cols=82 Identities=13% Similarity=0.241 Sum_probs=70.1
Q ss_pred EEEEEEe--CCEEEEeEEEEEEc------CceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHH
Q 003077 737 YSVILTV--KSVVVSAGLLRIFG------REVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESI 808 (850)
Q Consensus 737 y~~vl~~--~~~~V~aA~lri~g------~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~~A~~~ 808 (850)
|.+++.. ++++||.+.+.+.. ..++.|..++|.++|||||+|+.||+.+++.|+++|+++|.|.+.+...+|
T Consensus 54 ~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~~~N~~~ 133 (150)
T PLN02706 54 LICVIEDAASGRIIATGSVFVERKFIRNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENKAF 133 (150)
T ss_pred EEEEEEeCCCCcEEEEEEEEEEeecccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeccccHHH
Confidence 4445454 68999999885422 346778889999999999999999999999999999999999999888999
Q ss_pred HHhccCcEEcC
Q 003077 809 WTKKFGFRKMS 819 (850)
Q Consensus 809 w~~kfGF~~i~ 819 (850)
|+ |+||+..+
T Consensus 134 y~-k~GF~~~g 143 (150)
T PLN02706 134 YE-KCGYVRKE 143 (150)
T ss_pred HH-HCcCEEeh
Confidence 99 99999865
No 13
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.83 E-value=1.1e-09 Score=115.44 Aligned_cols=91 Identities=23% Similarity=0.652 Sum_probs=76.3
Q ss_pred cccccccccCC---------CceeeeCCCCCccCccccCCC-----CCCCCCcccccCCCCCCCCccccccccCCccCCC
Q 003077 507 SDDMCHVCGDG---------ENLLLCNGCPLAFHAACLDPL-----LIPESGWRCPNCRQGHSSSMSRSVDLKGGLEAPG 572 (850)
Q Consensus 507 ~dd~C~vCgdg---------G~Ll~Cd~C~~afH~~Cl~p~-----~vp~g~W~C~~C~~~~~~ea~dpI~~~r~~~~~~ 572 (850)
-...|.+|-++ ..+++|..|--++|..|+... .+-...|.|..|+
T Consensus 257 ~~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~--------------------- 315 (381)
T KOG1512|consen 257 RRNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCE--------------------- 315 (381)
T ss_pred chhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccH---------------------
Confidence 34679999764 469999999999999999853 3445689999996
Q ss_pred CCccccccCCCCcCCCCccCCCceeecCCCCCccCCCcCCCCCCCCccCCCCCCcEecCCch
Q 003077 573 AEVGGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCN 634 (850)
Q Consensus 573 ~e~~~C~iC~~~d~~~~~~d~~~LL~CdqC~r~fHv~CL~~~g~~~L~evP~g~WfCc~~C~ 634 (850)
.|.+|+++. -+..++.||.|+|.||..|+. |..+|.|.|.|-..|.
T Consensus 316 ----lC~IC~~P~------~E~E~~FCD~CDRG~HT~CVG------L~~lP~G~WICD~~C~ 361 (381)
T KOG1512|consen 316 ----LCRICLGPV------IESEHLFCDVCDRGPHTLCVG------LQDLPRGEWICDMRCR 361 (381)
T ss_pred ----hhhccCCcc------cchheeccccccCCCCccccc------cccccCccchhhhHHH
Confidence 899999885 367899999999999999996 7889999999954564
No 14
>PRK07757 acetyltransferase; Provisional
Probab=98.81 E-value=1.7e-08 Score=98.05 Aligned_cols=82 Identities=22% Similarity=0.353 Sum_probs=72.9
Q ss_pred EEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEEcC
Q 003077 740 ILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRKMS 819 (850)
Q Consensus 740 vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~~A~~~w~~kfGF~~i~ 819 (850)
++..++++||.+.+.+.+.+.++|-.|+|.|+|||+|+|+.||..+++.+.+.|+.++.+... +..||+ |+||+.++
T Consensus 45 i~~~~~~lvG~~~l~~~~~~~~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~~~g~~~i~~~~~--~~~~Y~-k~GF~~~~ 121 (152)
T PRK07757 45 VAEEEGEIVGCCALHILWEDLAEIRSLAVSEDYRGQGIGRMLVEACLEEARELGVKRVFALTY--QPEFFE-KLGFREVD 121 (152)
T ss_pred EEEECCEEEEEEEEEeccCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCeEEEEeC--cHHHHH-HCCCEEcc
Confidence 446789999999999888889999999999999999999999999999999999999876543 578999 99999998
Q ss_pred HHHHH
Q 003077 820 RERLL 824 (850)
Q Consensus 820 ~~~~~ 824 (850)
..++.
T Consensus 122 ~~~~~ 126 (152)
T PRK07757 122 KEALP 126 (152)
T ss_pred cccCC
Confidence 85543
No 15
>PRK07922 N-acetylglutamate synthase; Validated
Probab=98.80 E-value=1.9e-08 Score=101.02 Aligned_cols=79 Identities=18% Similarity=0.304 Sum_probs=71.3
Q ss_pred EEEE-eCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEE
Q 003077 739 VILT-VKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRK 817 (850)
Q Consensus 739 ~vl~-~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~~A~~~w~~kfGF~~ 817 (850)
+|++ .++++||.+.+.+...+.++|..++|+++|||+|+|++||+++++.+++.|+++|.+... +..||+ |+||+.
T Consensus 48 ~va~~~~~~iiG~~~~~~~~~~~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~~g~~~l~~~~~--~~~fY~-k~GF~~ 124 (169)
T PRK07922 48 WVAEHLDGEVVGCGALHVMWEDLAEIRTVAVDPAARGRGVGHAIVERLLDVARELGLSRVFVLTF--EVEFFA-RHGFVE 124 (169)
T ss_pred EEEEecCCcEEEEEEEeecCCCceEEEEEEECHHHhCCCHHHHHHHHHHHHHHHcCCCEEEEEec--cHHHHH-HCCCEE
Confidence 4566 889999999988777788999999999999999999999999999999999999987654 478999 999999
Q ss_pred cCH
Q 003077 818 MSR 820 (850)
Q Consensus 818 i~~ 820 (850)
++.
T Consensus 125 ~~~ 127 (169)
T PRK07922 125 IDG 127 (169)
T ss_pred Ccc
Confidence 875
No 16
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.79 E-value=2.5e-09 Score=126.81 Aligned_cols=147 Identities=28% Similarity=0.566 Sum_probs=99.2
Q ss_pred CCCCccCccccCCC--CCCCCCcccccCCC-CCCCCccccccccCCccCCCCCccccccCCCCcCCCCccCCCceeecCC
Q 003077 525 GCPLAFHAACLDPL--LIPESGWRCPNCRQ-GHSSSMSRSVDLKGGLEAPGAEVGGCVICRSHDFSAATFDDRTVIYCDQ 601 (850)
Q Consensus 525 ~C~~afH~~Cl~p~--~vp~g~W~C~~C~~-~~~~ea~dpI~~~r~~~~~~~e~~~C~iC~~~d~~~~~~d~~~LL~Cdq 601 (850)
.|+|+||..|+.|. .-|+++|.|+.|.. ..+.++.+ ......+...|.+|+. .++++.|+.
T Consensus 1 ~~~r~~~~~~~~p~~~~~~~~~~k~~~~e~~~~~~~~~~-------~~~~~~~~e~c~ic~~---------~g~~l~c~t 64 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPKLKEEPEMDPKCPGCESSSAQVEAKD-------DDWDDAEQEACRICAD---------GGELLWCDT 64 (696)
T ss_pred CCCcccCcCCCCcccccCCcCCccCcchhhccccccccc-------CCcchhhhhhhhhhcC---------CCcEEEecc
Confidence 48999999999983 45589999999964 22222211 0112334468999984 578999999
Q ss_pred CCCccCCCcCCCCCCCCccCCCCCCcEecCCch--hHHHHHhhhhcCCcccCCC---CccchhhhhhhcccccccCCcch
Q 003077 602 CEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCN--RIHAALQDFVSNRAQTIPA---SSLSTINRKHIEKGILFDGTMND 676 (850)
Q Consensus 602 C~r~fHv~CL~~~g~~~L~evP~g~WfCc~~C~--~i~~~LqkLv~~~~e~Lp~---~~~~~I~rk~ee~gi~~~~~~~~ 676 (850)
|..+||..|+.+ ++...|.++|.|+ .|. ....++++++.|...+.+. ...+.+. .....++. .++++
T Consensus 65 C~~s~h~~cl~~----pl~~~p~~~~~c~-Rc~~p~~~~k~~~il~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~re~~ 136 (696)
T KOG0383|consen 65 CPASFHASCLGP----PLTPQPNGEFICP-RCFCPKNAGKIEKILGWRWKPTPKPREGNQGVIS-PRRSNGIV--EREFF 136 (696)
T ss_pred ccHHHHHHccCC----CCCcCCccceeee-eeccCCCcccccccceeEecCCCCccccCcCccC-Ccccccch--hhhcc
Confidence 999999999986 6788898889995 662 2334677777765433332 2222221 11122333 57899
Q ss_pred hhhhhhhccccchhhhhhh
Q 003077 677 VQWQMLKKAQCFEEKEKSL 695 (850)
Q Consensus 677 vkWqlLs~~~~swe~~~~l 695 (850)
++|+.++|++|.|....++
T Consensus 137 vk~qg~s~~~c~~~~e~~~ 155 (696)
T KOG0383|consen 137 VKWQGLSYWHCSWKSELLL 155 (696)
T ss_pred cccccCCccchhHHHHHHh
Confidence 9999999999999844333
No 17
>PRK03624 putative acetyltransferase; Provisional
Probab=98.78 E-value=2.1e-08 Score=94.12 Aligned_cols=83 Identities=16% Similarity=0.222 Sum_probs=70.2
Q ss_pred EEEEEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecch---hhHHHHHHhcc
Q 003077 737 YSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA---EKAESIWTKKF 813 (850)
Q Consensus 737 y~~vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~---~~A~~~w~~kf 813 (850)
+.+|+..++++||.+.+.. ....+.+..|+|+++|||||+|+.|+..+++.++.+|++++.+.+. ..++.+|+ |+
T Consensus 46 ~~~v~~~~~~~vG~~~~~~-~~~~~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~-k~ 123 (140)
T PRK03624 46 LFLVAEVGGEVVGTVMGGY-DGHRGWAYYLAVHPDFRGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFYE-AL 123 (140)
T ss_pred eEEEEEcCCcEEEEEEeec-cCCCceEEEEEECHHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHH-Hc
Confidence 4556678899999998764 3345678899999999999999999999999999999999888765 46899998 99
Q ss_pred CcEEcCHH
Q 003077 814 GFRKMSRE 821 (850)
Q Consensus 814 GF~~i~~~ 821 (850)
||+..+..
T Consensus 124 GF~~~~~~ 131 (140)
T PRK03624 124 GYEEQDRI 131 (140)
T ss_pred CCccccEE
Confidence 99986643
No 18
>PLN02825 amino-acid N-acetyltransferase
Probab=98.77 E-value=2.4e-08 Score=116.41 Aligned_cols=88 Identities=25% Similarity=0.376 Sum_probs=77.8
Q ss_pred EEEEeCCEEEEeEEEEEEc-CceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEE
Q 003077 739 VILTVKSVVVSAGLLRIFG-REVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRK 817 (850)
Q Consensus 739 ~vl~~~~~~V~aA~lri~g-~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~~A~~~w~~kfGF~~ 817 (850)
+|++.|+++||+|.+..+. .+.+||-.|||+|+|||+|+|++||+.+|+.++++|+++|+|.+ ..|..||. ++||..
T Consensus 410 ~V~e~Dg~IVG~aal~~~~~~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Llt-t~a~~fY~-k~GF~~ 487 (515)
T PLN02825 410 VVVEREGSIIACAALFPFFEEKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAASLGLEKLFLLT-TRTADWFV-RRGFSE 487 (515)
T ss_pred EEEEECCEEEEEEEEEeecCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEe-CcHHHHHH-HCCCEE
Confidence 3568899999999987664 46899999999999999999999999999999999999999987 57889999 999999
Q ss_pred cCHHHHHhhhc
Q 003077 818 MSRERLLKYQR 828 (850)
Q Consensus 818 i~~~~~~~~~~ 828 (850)
.+.+++..-++
T Consensus 488 ~~~~~lp~~~~ 498 (515)
T PLN02825 488 CSIESLPEARR 498 (515)
T ss_pred eChhhCCHHHH
Confidence 99987765544
No 19
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=98.76 E-value=5.8e-08 Score=91.16 Aligned_cols=79 Identities=22% Similarity=0.237 Sum_probs=66.4
Q ss_pred EEEEEEeCCEEEEeEEEEEE-----cC--ceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHH
Q 003077 737 YSVILTVKSVVVSAGLLRIF-----GR--EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIW 809 (850)
Q Consensus 737 y~~vl~~~~~~V~aA~lri~-----g~--~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~~A~~~w 809 (850)
++++.++++++||.+.+-.. |. .++-|--|||.|+|||||+|++||+++++.+++.|+..++|-+ ...+||
T Consensus 42 ~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~~v~v~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~--~~~~~Y 119 (127)
T PF13527_consen 42 RCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAAYIGDVAVDPEYRGRGLGRQLMRALLERARERGVPFIFLFP--SSPPFY 119 (127)
T ss_dssp EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE---SSHHHH
T ss_pred cEEEEEECCEEEEEEEEEEEEEEECCEEEEEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEec--CChhhh
Confidence 67778889999998887554 33 4789999999999999999999999999999999999999877 447899
Q ss_pred HhccCcEEc
Q 003077 810 TKKFGFRKM 818 (850)
Q Consensus 810 ~~kfGF~~i 818 (850)
. +|||+.+
T Consensus 120 ~-~~G~~~~ 127 (127)
T PF13527_consen 120 R-RFGFEYA 127 (127)
T ss_dssp H-HTTEEEE
T ss_pred h-cCCCEEC
Confidence 9 9999864
No 20
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.71 E-value=2.7e-08 Score=110.46 Aligned_cols=82 Identities=16% Similarity=0.247 Sum_probs=74.1
Q ss_pred ceEEEEEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccC
Q 003077 735 GMYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFG 814 (850)
Q Consensus 735 Gfy~~vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~~A~~~w~~kfG 814 (850)
--|+++++.++++||+|++ .+. .|..|||+++|||+|+|+.||+.|++.+++.|+.+++|.+.+.+..||+ ++|
T Consensus 30 ~d~~vv~~~~~~lVg~g~l--~g~---~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~~~fy~-klG 103 (332)
T TIGR00124 30 LEIFIAVYEDEEIIGCGGI--AGN---VIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEYAALFE-YCG 103 (332)
T ss_pred CCEEEEEEECCEEEEEEEE--ecC---EEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchHHHHHH-HcC
Confidence 3577788899999999997 343 4889999999999999999999999999999999999999999999999 999
Q ss_pred cEEcCHHH
Q 003077 815 FRKMSRER 822 (850)
Q Consensus 815 F~~i~~~~ 822 (850)
|..+...+
T Consensus 104 F~~i~~~~ 111 (332)
T TIGR00124 104 FKTLAEAK 111 (332)
T ss_pred CEEeeeec
Confidence 99998643
No 21
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=98.70 E-value=5.2e-08 Score=111.70 Aligned_cols=84 Identities=19% Similarity=0.329 Sum_probs=73.9
Q ss_pred EEEeCCEEEEeEEEEEEc-CceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEEc
Q 003077 740 ILTVKSVVVSAGLLRIFG-REVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRKM 818 (850)
Q Consensus 740 vl~~~~~~V~aA~lri~g-~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~~A~~~w~~kfGF~~i 818 (850)
|++.++++||++.+..+. ...++|-.++|+++|||||+|++||+.+|+.|++.|+++|++.+. .+..||+ ++||+.+
T Consensus 326 V~~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~~~-~a~~fY~-k~GF~~~ 403 (429)
T TIGR01890 326 IIEHDGNIIGCAALYPYAEEDCGEMACLAVSPEYQDGGRGERLLAHIEDRARQMGISRLFVLTT-RTGHWFR-ERGFQTA 403 (429)
T ss_pred EEEECCEEEEEEEEEecCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEeec-chHHHHH-HCCCEEC
Confidence 557899999999998764 468999999999999999999999999999999999999887654 5789999 9999999
Q ss_pred CHHHHHh
Q 003077 819 SRERLLK 825 (850)
Q Consensus 819 ~~~~~~~ 825 (850)
+..++..
T Consensus 404 g~~~l~~ 410 (429)
T TIGR01890 404 SVDELPE 410 (429)
T ss_pred ChhhCCH
Confidence 9865443
No 22
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=98.68 E-value=4.3e-08 Score=95.57 Aligned_cols=84 Identities=20% Similarity=0.179 Sum_probs=72.9
Q ss_pred EEEEe-CCEEEEeEEEEEEcCceEE--EeEeEeeccccccChhHHHHHHHHHHHhhCC-ccEEEecchhhHHHHHHhccC
Q 003077 739 VILTV-KSVVVSAGLLRIFGREVAE--LPLVATCREYQGKGCFQALFSCIERLLCSLN-VENLVLPAAEKAESIWTKKFG 814 (850)
Q Consensus 739 ~vl~~-~~~~V~aA~lri~g~~~AE--lp~vAt~~~~RgqG~gr~L~~~iE~~l~~lg-v~~LvL~A~~~A~~~w~~kfG 814 (850)
+.++. ||++|++|||-..+.+..+ |-||+|.+++||+|+|+.||....+.+.... =+-+.|.||..++.||- +||
T Consensus 52 l~~~~~~g~LvAyaRLl~~~~~~~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~AQahLq~fYa-~~G 130 (155)
T COG2153 52 LLGWTPDGELVAYARLLPPGAEYEEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGAQAHLQDFYA-SFG 130 (155)
T ss_pred EEEEcCCCeEEEEEecCCCCCCcCceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEehHHHHHHHHH-HhC
Confidence 34454 9999999999887766555 9999999999999999999998888877766 56799999999999999 999
Q ss_pred cEEcCHHHH
Q 003077 815 FRKMSRERL 823 (850)
Q Consensus 815 F~~i~~~~~ 823 (850)
|.+.+++-+
T Consensus 131 Fv~~~e~yl 139 (155)
T COG2153 131 FVRVGEEYL 139 (155)
T ss_pred cEEcCchhh
Confidence 999999744
No 23
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=98.65 E-value=1e-07 Score=97.05 Aligned_cols=80 Identities=15% Similarity=0.083 Sum_probs=70.9
Q ss_pred EEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecch---hhHHHHHHhccCcE
Q 003077 740 ILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA---EKAESIWTKKFGFR 816 (850)
Q Consensus 740 vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~---~~A~~~w~~kfGF~ 816 (850)
+...++++||.+.+.......++|-.++|.++|||+|+|+.|+.++++.+..+|+.+|.+... ..|+.||+ |+||+
T Consensus 103 ~~~~~g~iiG~i~l~~~~~~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~-klGF~ 181 (191)
T TIGR02382 103 LRDASGDPRGYVTLRELNDTDARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRLYI-RSGAN 181 (191)
T ss_pred EEccCCeEEEEEEEEecCCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHH-HcCCc
Confidence 335689999999998776677899999999999999999999999999999999999998854 56899999 99998
Q ss_pred EcCH
Q 003077 817 KMSR 820 (850)
Q Consensus 817 ~i~~ 820 (850)
..+.
T Consensus 182 ~~~~ 185 (191)
T TIGR02382 182 IEST 185 (191)
T ss_pred cccc
Confidence 7654
No 24
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=98.65 E-value=1.1e-07 Score=96.98 Aligned_cols=83 Identities=16% Similarity=0.111 Sum_probs=71.4
Q ss_pred EEEEEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecch---hhHHHHHHhcc
Q 003077 737 YSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA---EKAESIWTKKF 813 (850)
Q Consensus 737 y~~vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~---~~A~~~w~~kf 813 (850)
+.++...++++||.+.+...+...++|-.++|.++|||||+|+.|+..+++.+++.|+.++++.+. ..|..||+ |+
T Consensus 103 ~~v~~~~~g~~vG~~~l~~~~~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~ye-k~ 181 (194)
T PRK10975 103 CLLLRDASGQIQGFVTLRELNDTDARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLYI-RS 181 (194)
T ss_pred EEEEEcCCCCEEEEEEEEecCCCceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHH-HC
Confidence 333334578999999998777777899999999999999999999999999999999999988754 57899999 99
Q ss_pred CcEEcCH
Q 003077 814 GFRKMSR 820 (850)
Q Consensus 814 GF~~i~~ 820 (850)
||+..+.
T Consensus 182 Gf~~~~~ 188 (194)
T PRK10975 182 GANIEST 188 (194)
T ss_pred CCeEeEE
Confidence 9998653
No 25
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=98.65 E-value=1.5e-07 Score=87.57 Aligned_cols=81 Identities=22% Similarity=0.320 Sum_probs=69.3
Q ss_pred EEEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEec---chhhHHHHHHhccCc
Q 003077 739 VILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLP---AAEKAESIWTKKFGF 815 (850)
Q Consensus 739 ~vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~---A~~~A~~~w~~kfGF 815 (850)
++++.++++||.+.++.. .....+-.++|.++|||||+|+.|++++++.+...|+.++++. ....+..||+ ++||
T Consensus 34 ~~~~~~~~~vg~~~~~~~-~~~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~-~~Gf 111 (131)
T TIGR01575 34 LLARIGGKVVGYAGVQIV-LDEAHILNIAVKPEYQGQGIGRALLRELIDEAKGRGVNEIFLEVRVSNIAAQALYK-KLGF 111 (131)
T ss_pred EEEecCCeEEEEEEEEec-CCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCeEEEEEecccHHHHHHHH-HcCC
Confidence 344578999999998753 3456788899999999999999999999999999999999984 4566889999 9999
Q ss_pred EEcCHH
Q 003077 816 RKMSRE 821 (850)
Q Consensus 816 ~~i~~~ 821 (850)
+.++..
T Consensus 112 ~~~~~~ 117 (131)
T TIGR01575 112 NEIAIR 117 (131)
T ss_pred Cccccc
Confidence 998764
No 26
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=98.63 E-value=8.5e-09 Score=115.26 Aligned_cols=106 Identities=31% Similarity=0.790 Sum_probs=76.0
Q ss_pred CcccccccccCC-----CceeeeCCCCCccCccccCCCCCCCCCcccccCCCCC----------CC-Cc-----------
Q 003077 506 GSDDMCHVCGDG-----ENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQGH----------SS-SM----------- 558 (850)
Q Consensus 506 ~~dd~C~vCgdg-----G~Ll~Cd~C~~afH~~Cl~p~~vp~g~W~C~~C~~~~----------~~-ea----------- 558 (850)
.-|+.|.+|... ..+++||+|.-+.|+.|.|+..+|+|.|+|+.|.... .. ++
T Consensus 191 ~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~f~peG~WlCrkCi~~~~~i~~C~fCps~dGaFkqT~dgrW~H 270 (669)
T COG5141 191 EFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQFLPEGFWLCRKCIYGEYQIRCCSFCPSSDGAFKQTSDGRWGH 270 (669)
T ss_pred hhhhhhHhccccccCCcceEEEecCcchhhhhhcccceecCcchhhhhhhcccccceeEEEeccCCCCceeeccCCchHh
Confidence 356788888743 4699999999999999999999999999999996521 11 11
Q ss_pred -----------------cccccccCCccCCCCCccccccCCCCcCCCCccCCCceeecC--CCCCccCCCcCCCCCCCCc
Q 003077 559 -----------------SRSVDLKGGLEAPGAEVGGCVICRSHDFSAATFDDRTVIYCD--QCEKEFHVGCLRKNGLCDL 619 (850)
Q Consensus 559 -----------------~dpI~~~r~~~~~~~e~~~C~iC~~~d~~~~~~d~~~LL~Cd--qC~r~fHv~CL~~~g~~~L 619 (850)
+|||+-+..+...... ..|.+|++. .++.++|. .|-++||+.|.+..|.-++
T Consensus 271 ~iCA~~~pelsF~~l~~~dpI~~i~sVs~srwk-l~C~iCk~~--------~GtcIqCs~~nC~~aYHVtCArrag~f~~ 341 (669)
T COG5141 271 VICAMFNPELSFGHLLSKDPIDNIASVSSSRWK-LGCLICKEF--------GGTCIQCSYFNCTRAYHVTCARRAGYFDL 341 (669)
T ss_pred HhHHHhcchhccccccccchhhhhcccchhhHh-heeeEEccc--------Ccceeeecccchhhhhhhhhhhhcchhhh
Confidence 2333211111111111 479999975 68999998 7999999999988877665
Q ss_pred c
Q 003077 620 K 620 (850)
Q Consensus 620 ~ 620 (850)
.
T Consensus 342 ~ 342 (669)
T COG5141 342 N 342 (669)
T ss_pred h
Confidence 4
No 27
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=98.63 E-value=2.2e-08 Score=113.55 Aligned_cols=142 Identities=18% Similarity=0.311 Sum_probs=100.8
Q ss_pred CcccccccccC-----CCceeeeCCCCCccCccccCCCCCCCCCcccccCCCC--CCCCc---cccc---------cccC
Q 003077 506 GSDDMCHVCGD-----GENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQG--HSSSM---SRSV---------DLKG 566 (850)
Q Consensus 506 ~~dd~C~vCgd-----gG~Ll~Cd~C~~afH~~Cl~p~~vp~g~W~C~~C~~~--~~~ea---~dpI---------~~~r 566 (850)
.....|.+|.. +.++..|+.|.++||+.|..+.....+.|.+..|... ...+. +.+. .-..
T Consensus 81 ~~e~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~~~~~~~~~~~c~~~~~~~~g~a~K~g~~a~~~l~y~~~~l~ 160 (464)
T KOG4323|consen 81 SSELNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRFPSLDIGESTECVFPIFSQEGGALKKGRLARPSLPYPEASLD 160 (464)
T ss_pred ccccCCcccccccccCchhhhhhhhhccCcccccCccCcCcCCccccccccccccccccccccccccccccccCcccccc
Confidence 34456777763 3478899999999999999998777889999998762 11111 1111 1112
Q ss_pred CccCCCCCccccccCCCCcCCCCccCCCceeecCCCCCccCCCcCCCCCCCCccCCCCCCcEecCCchhHHHHHhhhhcC
Q 003077 567 GLEAPGAEVGGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNRIHAALQDFVSN 646 (850)
Q Consensus 567 ~~~~~~~e~~~C~iC~~~d~~~~~~d~~~LL~CdqC~r~fHv~CL~~~g~~~L~evP~g~WfCc~~C~~i~~~LqkLv~~ 646 (850)
|...+..+. .|.+|....+ -..+.||+|+.|..|||..|+++...+.+...+..+||| ..|.+-...+.++-..
T Consensus 161 wD~~~~~n~-qc~vC~~g~~----~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C-~~C~~~~~~~~r~t~~ 234 (464)
T KOG4323|consen 161 WDSGHKVNL-QCSVCYCGGP----GAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFC-DVCNRGPKKVPRLTLR 234 (464)
T ss_pred cCccccccc-eeeeeecCCc----CccceeeeecccccHHHHHhccCCCCHhhccCccceEee-hhhccchhhccccccc
Confidence 233333444 3888875432 134599999999999999999988777788889999999 8898888888888766
Q ss_pred CcccCCC
Q 003077 647 RAQTIPA 653 (850)
Q Consensus 647 ~~e~Lp~ 653 (850)
.++.+..
T Consensus 235 ~~dv~~l 241 (464)
T KOG4323|consen 235 WADVLHL 241 (464)
T ss_pred cccccch
Confidence 5554433
No 28
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=98.61 E-value=2.6e-07 Score=89.24 Aligned_cols=85 Identities=21% Similarity=0.250 Sum_probs=71.9
Q ss_pred ceEEEEEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecc---hhhHHHHHHh
Q 003077 735 GMYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPA---AEKAESIWTK 811 (850)
Q Consensus 735 Gfy~~vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A---~~~A~~~w~~ 811 (850)
+++.+++..++++||.+.++.... .+++-.|+|.++|||+|+|+.|+..+++.++..|+..+++.+ -..|..+|+
T Consensus 39 ~~~~~~~~~~~~~vG~~~~~~~~~-~~~~~~i~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~- 116 (146)
T PRK09491 39 RYLNLKLTVNGQMAAFAITQVVLD-EATLFNIAVDPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYE- 116 (146)
T ss_pred CceEEEEEECCeEEEEEEEEeecC-ceEEEEEEECHHHccCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHH-
Confidence 455556678899999999876554 466788999999999999999999999999999999988854 467899999
Q ss_pred ccCcEEcCHH
Q 003077 812 KFGFRKMSRE 821 (850)
Q Consensus 812 kfGF~~i~~~ 821 (850)
|+||+..+..
T Consensus 117 k~Gf~~~~~~ 126 (146)
T PRK09491 117 SLGFNEVTIR 126 (146)
T ss_pred HcCCEEeeee
Confidence 9999988753
No 29
>PRK05279 N-acetylglutamate synthase; Validated
Probab=98.61 E-value=1.4e-07 Score=108.56 Aligned_cols=84 Identities=18% Similarity=0.335 Sum_probs=73.3
Q ss_pred EEEEeCCEEEEeEEEEEEc-CceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEE
Q 003077 739 VILTVKSVVVSAGLLRIFG-REVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRK 817 (850)
Q Consensus 739 ~vl~~~~~~V~aA~lri~g-~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~~A~~~w~~kfGF~~ 817 (850)
++++.++++||++.+..+. ...++|-.+||.++|||||+|++||+.+++.+++.|+.++.+.+ ..|..||+ ++||+.
T Consensus 337 ~va~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~~-~~a~~fY~-k~GF~~ 414 (441)
T PRK05279 337 TVIERDGLIIGCAALYPFPEEKMGEMACLAVHPDYRGSGRGERLLKRIEQRARQLGLKRLFVLT-TRTAHWFL-ERGFVP 414 (441)
T ss_pred EEEEECCEEEEEEEEEEcCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEec-chHHHHHH-HCcCEE
Confidence 4557899999999887654 36899999999999999999999999999999999999998765 56899999 999999
Q ss_pred cCHHHHH
Q 003077 818 MSRERLL 824 (850)
Q Consensus 818 i~~~~~~ 824 (850)
++.+++.
T Consensus 415 ~g~~~~~ 421 (441)
T PRK05279 415 VDVDDLP 421 (441)
T ss_pred CChhhCc
Confidence 9985543
No 30
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=98.60 E-value=1.2e-07 Score=113.28 Aligned_cols=83 Identities=17% Similarity=0.219 Sum_probs=74.5
Q ss_pred EEEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEEc
Q 003077 739 VILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRKM 818 (850)
Q Consensus 739 ~vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~~A~~~w~~kfGF~~i 818 (850)
+|++.+|++||.+.+...+.+.++|..++|+|+|||||+|+.||+.+++.+++.|+++|+|.+. +..||+ |+||+..
T Consensus 506 ~Va~~~g~IVG~~~l~~~~~~~~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak~~g~~~i~l~~~--a~~FYe-k~GF~~~ 582 (614)
T PRK12308 506 AVAEHHGEVTGCASLYIYDSGLAEIRSLGVEAGWQVQGQGSALVQYLVEKARQMAIKKVFVLTR--VPEFFM-KQGFSPT 582 (614)
T ss_pred EEEEECCEEEEEEEEEEcCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEeeC--cHHHHH-HCCCEEC
Confidence 4567899999999998877778999999999999999999999999999999999999988753 679999 9999999
Q ss_pred CHHHHH
Q 003077 819 SRERLL 824 (850)
Q Consensus 819 ~~~~~~ 824 (850)
+..++.
T Consensus 583 ~~~~~~ 588 (614)
T PRK12308 583 SKSLLP 588 (614)
T ss_pred CcccCC
Confidence 986543
No 31
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=98.58 E-value=1.8e-07 Score=100.48 Aligned_cols=85 Identities=15% Similarity=0.189 Sum_probs=72.4
Q ss_pred ceEEEEEEeCCEEEEeEEEEE-EcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhh---HHHHHH
Q 003077 735 GMYSVILTVKSVVVSAGLLRI-FGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEK---AESIWT 810 (850)
Q Consensus 735 Gfy~~vl~~~~~~V~aA~lri-~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~~---A~~~w~ 810 (850)
+.+.++++.++++||.+.+.+ .+...++|-.+||+|+|||||+|+.||..+++.++..|++++++.+... |..+|.
T Consensus 157 ~~~~~v~~~~g~iVG~~~~~~~~~~~~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly~ 236 (266)
T TIGR03827 157 NVVYFGVEDGGKIIALASAEMDPENGNAEMTDFATLPEYRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSYGMNITFA 236 (266)
T ss_pred CcEEEEEEECCEEEEEEEEecCCCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcchhHHHHHH
Confidence 344556678999999999854 3446799999999999999999999999999999999999999887644 567898
Q ss_pred hccCcEEcCH
Q 003077 811 KKFGFRKMSR 820 (850)
Q Consensus 811 ~kfGF~~i~~ 820 (850)
|+||+..+.
T Consensus 237 -k~GF~~~G~ 245 (266)
T TIGR03827 237 -RLGYAYGGT 245 (266)
T ss_pred -HcCCccccE
Confidence 999998776
No 32
>PRK13688 hypothetical protein; Provisional
Probab=98.56 E-value=2.4e-07 Score=92.53 Aligned_cols=77 Identities=18% Similarity=0.235 Sum_probs=61.3
Q ss_pred EEEEeCCEEEEeEEEEEE----------cCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHH
Q 003077 739 VILTVKSVVVSAGLLRIF----------GREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESI 808 (850)
Q Consensus 739 ~vl~~~~~~V~aA~lri~----------g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~~A~~~ 808 (850)
++++.++++||++.+... ..+.++|-.|||.++|||||+|++||+.+++ .++. +.+.+...|..|
T Consensus 48 ~~~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rgkGiG~~Ll~~a~~----~~~~-~~~~~~~~a~~F 122 (156)
T PRK13688 48 YGIYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQNRGYGEMLVDFAKS----FQLP-IKTIARNKSKDF 122 (156)
T ss_pred EEEEECCEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHH----hCCe-EEEEeccchHHH
Confidence 345678999998887542 2467899999999999999999999986554 3444 455677789999
Q ss_pred HHhccCcEEcCHH
Q 003077 809 WTKKFGFRKMSRE 821 (850)
Q Consensus 809 w~~kfGF~~i~~~ 821 (850)
|+ |+||+.++..
T Consensus 123 Y~-k~GF~~~~~~ 134 (156)
T PRK13688 123 WL-KLGFTPVEYK 134 (156)
T ss_pred HH-hCCCEEeEEe
Confidence 99 9999998765
No 33
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.54 E-value=3.7e-08 Score=121.14 Aligned_cols=107 Identities=31% Similarity=0.689 Sum_probs=77.8
Q ss_pred CCCcccccccccCC-----CceeeeCCCCCccCccccCCCCCCCCCcccccCCCCCCCCc--------------------
Q 003077 504 TGGSDDMCHVCGDG-----ENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQGHSSSM-------------------- 558 (850)
Q Consensus 504 ~~~~dd~C~vCgdg-----G~Ll~Cd~C~~afH~~Cl~p~~vp~g~W~C~~C~~~~~~ea-------------------- 558 (850)
..+.|..|.||.++ ..+++||+|..++|+.|++.+-+|+|.|+|..|....++..
T Consensus 215 ~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~~~v~c~~cp~~~gAFkqt~dgrw 294 (1051)
T KOG0955|consen 215 LLEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFIPEGQWLCRRCLQSPQRPVRCLLCPSKGGAFKQTDDGRW 294 (1051)
T ss_pred ccCCCccceeecccccCCCceEEEcCCCcchhhhhccCCCCCCCCcEeehhhccCcCcccceEeccCCCCcceeccCCce
Confidence 34677899999876 47999999999999999999999999999999977433221
Q ss_pred -------------------cccccccCCccCCCCCccccccCCCCcCCCCccCCCceeecC--CCCCccCCCcCCCCCCC
Q 003077 559 -------------------SRSVDLKGGLEAPGAEVGGCVICRSHDFSAATFDDRTVIYCD--QCEKEFHVGCLRKNGLC 617 (850)
Q Consensus 559 -------------------~dpI~~~r~~~~~~~e~~~C~iC~~~d~~~~~~d~~~LL~Cd--qC~r~fHv~CL~~~g~~ 617 (850)
.+||..++....--. ...|++|+..+ .+..++|. .|-.+||+.|.+..|+.
T Consensus 295 ~Hv~caiwipev~F~nt~~~E~I~~i~~i~~aRw-kL~cy~cK~~~-------~gaciqcs~~~c~~a~hvtca~~agl~ 366 (1051)
T KOG0955|consen 295 AHVVCAIWIPEVSFANTVFLEPIDSIENIPPARW-KLTCYICKQKG-------LGACIQCSKANCYTAFHVTCARRAGLY 366 (1051)
T ss_pred eeeehhhcccccccccchhhccccchhcCcHhhh-hceeeeeccCC-------CCcceecchhhhhhhhhhhhHhhcCce
Confidence 122211111110001 14799999753 57889998 79999999999887764
Q ss_pred C
Q 003077 618 D 618 (850)
Q Consensus 618 ~ 618 (850)
+
T Consensus 367 m 367 (1051)
T KOG0955|consen 367 M 367 (1051)
T ss_pred E
Confidence 4
No 34
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.53 E-value=6.3e-08 Score=112.08 Aligned_cols=46 Identities=39% Similarity=1.143 Sum_probs=41.2
Q ss_pred cccccccccCCCce---eeeCCCCCccCccccCCC----CCCCCCcccccCCC
Q 003077 507 SDDMCHVCGDGENL---LLCNGCPLAFHAACLDPL----LIPESGWRCPNCRQ 552 (850)
Q Consensus 507 ~dd~C~vCgdgG~L---l~Cd~C~~afH~~Cl~p~----~vp~g~W~C~~C~~ 552 (850)
..++|..|+..|.. ++||+|+++||+.||.|+ .+|.|.|+|+.|..
T Consensus 252 ~~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~ 304 (613)
T KOG4299|consen 252 IEDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKI 304 (613)
T ss_pred HHHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCee
Confidence 35799999988866 999999999999999985 68899999999965
No 35
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=98.52 E-value=5.1e-07 Score=87.68 Aligned_cols=84 Identities=17% Similarity=0.288 Sum_probs=69.7
Q ss_pred eEEEEEEeCCEEEEeEEEEEEc----CceEEEeEeEeeccccccChhHHHHHHHHHHHhh-CCccEEEecch---hhHHH
Q 003077 736 MYSVILTVKSVVVSAGLLRIFG----REVAELPLVATCREYQGKGCFQALFSCIERLLCS-LNVENLVLPAA---EKAES 807 (850)
Q Consensus 736 fy~~vl~~~~~~V~aA~lri~g----~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~-lgv~~LvL~A~---~~A~~ 807 (850)
.+.+++..++++||.+.+.... ...+++. ++|.++|||+|+|+.||+.+++.+.. +|+.++.+... ..|+.
T Consensus 51 ~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~~~~-~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~ 129 (162)
T PRK10140 51 IKQLVACIDGDVVGHLTIDVQQRPRRSHVADFG-ICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIK 129 (162)
T ss_pred cEEEEEEECCEEEEEEEEecccccccceEEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHH
Confidence 4556777899999999986532 2355654 89999999999999999999999988 79888877654 68899
Q ss_pred HHHhccCcEEcCHH
Q 003077 808 IWTKKFGFRKMSRE 821 (850)
Q Consensus 808 ~w~~kfGF~~i~~~ 821 (850)
||+ |+||+..+..
T Consensus 130 ~y~-k~GF~~~g~~ 142 (162)
T PRK10140 130 VYK-KYGFEIEGTG 142 (162)
T ss_pred HHH-HCCCEEEeec
Confidence 999 9999998874
No 36
>PRK09831 putative acyltransferase; Provisional
Probab=98.50 E-value=3.1e-07 Score=89.35 Aligned_cols=73 Identities=16% Similarity=0.256 Sum_probs=62.3
Q ss_pred EEEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEEc
Q 003077 739 VILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRKM 818 (850)
Q Consensus 739 ~vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~~A~~~w~~kfGF~~i 818 (850)
+|+..+|++||.+.+.. ..+..++|.++|||||+|++||..+++.+.. |.+.+...|..||+ |+||..+
T Consensus 56 ~v~~~~~~iiG~~~~~~-----~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-----l~v~~~~~a~~~Y~-k~Gf~~~ 124 (147)
T PRK09831 56 RVAVINAQPVGFITCIE-----HYIDMLFVDPEYTRRGVASALLKPLIKSESE-----LTVDASITAKPFFE-RYGFQTV 124 (147)
T ss_pred EEEEECCEEEEEEEehh-----ceeeeEEECHHHcCCCHHHHHHHHHHHHhhh-----eEeecchhhHHHHH-HCCCEEe
Confidence 35578899999988742 4678899999999999999999999999876 55667788999999 9999999
Q ss_pred CHHH
Q 003077 819 SRER 822 (850)
Q Consensus 819 ~~~~ 822 (850)
+...
T Consensus 125 g~~~ 128 (147)
T PRK09831 125 KQQR 128 (147)
T ss_pred eccc
Confidence 9865
No 37
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=98.50 E-value=5.5e-07 Score=89.40 Aligned_cols=85 Identities=19% Similarity=0.220 Sum_probs=69.5
Q ss_pred EEEEEEeCCE-EEEeEEEEEE---cCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecch---hhHHHHH
Q 003077 737 YSVILTVKSV-VVSAGLLRIF---GREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA---EKAESIW 809 (850)
Q Consensus 737 y~~vl~~~~~-~V~aA~lri~---g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~---~~A~~~w 809 (850)
++++..+++. .|||+.-... +..-++|-.+||+++|||||+|++|+..+.+.+++.|+..++|.+- ..|..+|
T Consensus 57 ~~~~a~d~~~~~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY 136 (165)
T KOG3139|consen 57 FCFLALDEKGDTVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSRGYSEVVLETEVTNLSALRLY 136 (165)
T ss_pred EEEEEEcCCCceEEEEEEeccccCCcceEEEEEEEechhhccccHHHHHHHHHHHHHHHCCCcEEEEeccccchHHHHHH
Confidence 4444444333 5777666542 2346899999999999999999999999999999999999999987 6899999
Q ss_pred HhccCcEEcCHHH
Q 003077 810 TKKFGFRKMSRER 822 (850)
Q Consensus 810 ~~kfGF~~i~~~~ 822 (850)
+ +|||.+.....
T Consensus 137 ~-sLGF~r~~r~~ 148 (165)
T KOG3139|consen 137 E-SLGFKRDKRLF 148 (165)
T ss_pred H-hcCceEeccee
Confidence 9 99999987753
No 38
>PHA00673 acetyltransferase domain containing protein
Probab=98.42 E-value=1.6e-06 Score=86.53 Aligned_cols=86 Identities=15% Similarity=0.141 Sum_probs=74.3
Q ss_pred ceEEEEEEeCCEEEEeEEEEEE------cCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchh--hHH
Q 003077 735 GMYSVILTVKSVVVSAGLLRIF------GREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAE--KAE 806 (850)
Q Consensus 735 Gfy~~vl~~~~~~V~aA~lri~------g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~--~A~ 806 (850)
+-..+|.+++|++||++.+.+. +...+.|.-|.|++++||||+|++||..+|+.|++.|...|.+.|.+ -.+
T Consensus 54 ~~~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv 133 (154)
T PHA00673 54 VAHFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLV 133 (154)
T ss_pred CcEEEEEEECCEEEEEEEEEEecCCccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccch
Confidence 3445566789999999998774 34677899999999999999999999999999999999999999996 578
Q ss_pred HHHHhccCcEEcCHH
Q 003077 807 SIWTKKFGFRKMSRE 821 (850)
Q Consensus 807 ~~w~~kfGF~~i~~~ 821 (850)
.||. +.|++.....
T Consensus 134 ~fy~-~~g~~~~~~~ 147 (154)
T PHA00673 134 QLLP-AAGYRETNRT 147 (154)
T ss_pred HHHH-hCCchhhchh
Confidence 9999 9999876543
No 39
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=98.37 E-value=1.4e-06 Score=86.41 Aligned_cols=83 Identities=14% Similarity=0.101 Sum_probs=67.3
Q ss_pred EEEEEE-eCCEEEEeEEEEE--EcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecch---hhHHHHHH
Q 003077 737 YSVILT-VKSVVVSAGLLRI--FGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA---EKAESIWT 810 (850)
Q Consensus 737 y~~vl~-~~~~~V~aA~lri--~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~---~~A~~~w~ 810 (850)
..+|.+ .++++||.+.+.. ...+.+.+-.+||+++|||||+|++|++.+++.++..++.+|.+... ..|..+|+
T Consensus 40 ~~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~ 119 (157)
T TIGR02406 40 TSIVAESEGGEIVGFVSGYLRPDRPDVLFVWQVAVDPRARGKGLARRLLEALLERVACERVRHLETTITPDNQASRALFK 119 (157)
T ss_pred cEEEEEcCCCeEEEEEEEEecCCCCCeEEEEEEEEChHhccCcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHHH
Confidence 345556 4679999876533 33467889999999999999999999999999999999988876543 68889999
Q ss_pred hccCcEEcCH
Q 003077 811 KKFGFRKMSR 820 (850)
Q Consensus 811 ~kfGF~~i~~ 820 (850)
|+||+....
T Consensus 120 -k~G~~~~~~ 128 (157)
T TIGR02406 120 -ALARRRGVH 128 (157)
T ss_pred -HhCcccCCC
Confidence 999987443
No 40
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=98.35 E-value=2.9e-06 Score=82.24 Aligned_cols=83 Identities=22% Similarity=0.326 Sum_probs=68.8
Q ss_pred eEEEEEEe-CCEEEEeEEEEEEc--CceEEEeEeEeeccccccChhHHHHHHHHHHH-hhCCccEEEecch---hhHHHH
Q 003077 736 MYSVILTV-KSVVVSAGLLRIFG--REVAELPLVATCREYQGKGCFQALFSCIERLL-CSLNVENLVLPAA---EKAESI 808 (850)
Q Consensus 736 fy~~vl~~-~~~~V~aA~lri~g--~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l-~~lgv~~LvL~A~---~~A~~~ 808 (850)
.+.+++.. +|++||.+.++... ...+++- +.+.++||++|+|+.|+..|++.| ..+|+++|.+... ..|+.|
T Consensus 50 ~~~~~v~~~~g~iiG~~~~~~~~~~~~~~~~~-~~v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~ 128 (155)
T PF13420_consen 50 QRLFLVAEEDGKIIGYVSLRDIDPYNHTAELS-IYVSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINF 128 (155)
T ss_dssp TEEEEEEECTTEEEEEEEEEESSSGTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHH
T ss_pred CcEEEEEEcCCcEEEEEEEEeeeccCCEEEEe-eEEChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHH
Confidence 44455555 99999999998655 3578877 555699999999999999999999 9999999876444 789999
Q ss_pred HHhccCcEEcCH
Q 003077 809 WTKKFGFRKMSR 820 (850)
Q Consensus 809 w~~kfGF~~i~~ 820 (850)
|+ ++||+..+.
T Consensus 129 ~~-~~GF~~~g~ 139 (155)
T PF13420_consen 129 YK-KLGFEEEGE 139 (155)
T ss_dssp HH-HTTEEEEEE
T ss_pred HH-hCCCEEEEE
Confidence 99 999999876
No 41
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.33 E-value=1.5e-06 Score=83.92 Aligned_cols=84 Identities=23% Similarity=0.296 Sum_probs=74.8
Q ss_pred eEEEEEEe--CCEEEEeEEEEEE-----cC-ceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHH
Q 003077 736 MYSVILTV--KSVVVSAGLLRIF-----GR-EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAES 807 (850)
Q Consensus 736 fy~~vl~~--~~~~V~aA~lri~-----g~-~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~~A~~ 807 (850)
+|.+|+++ .+++||+|+|.|- +- .-.+|.=|+|+++||||++|+.|++.+-.+++++|+=.+.|.-.++..+
T Consensus 53 Y~i~Vied~~s~~vigtatL~IE~KfIh~~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~LdC~~~nv~ 132 (150)
T KOG3396|consen 53 YYIVVIEDKESEKVIGTATLFIERKFIHGCGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKNVK 132 (150)
T ss_pred EEEEEEEeCCcCeEEEEEEEEEehhhhhcccccCceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEEecchhhhh
Confidence 67777774 4899999999773 32 3467999999999999999999999999999999999999999999999
Q ss_pred HHHhccCcEEcCH
Q 003077 808 IWTKKFGFRKMSR 820 (850)
Q Consensus 808 ~w~~kfGF~~i~~ 820 (850)
||+ ||||+..+.
T Consensus 133 FYe-KcG~s~~~~ 144 (150)
T KOG3396|consen 133 FYE-KCGYSNAGN 144 (150)
T ss_pred HHH-HcCccccch
Confidence 999 999998773
No 42
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.32 E-value=1.9e-07 Score=108.37 Aligned_cols=87 Identities=31% Similarity=0.947 Sum_probs=72.8
Q ss_pred ccccccccCC-----CceeeeCCCCCccCccccCCC---CCCCCCcccccCCCCCCCCccccccccCCccCCCCCccccc
Q 003077 508 DDMCHVCGDG-----ENLLLCNGCPLAFHAACLDPL---LIPESGWRCPNCRQGHSSSMSRSVDLKGGLEAPGAEVGGCV 579 (850)
Q Consensus 508 dd~C~vCgdg-----G~Ll~Cd~C~~afH~~Cl~p~---~vp~g~W~C~~C~~~~~~ea~dpI~~~r~~~~~~~e~~~C~ 579 (850)
..+|.+|+.. |.|+.|..|...||.+|+... .+-.+.|.|+.|+ .|.
T Consensus 18 ~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~cr-------------------------vCe 72 (694)
T KOG4443|consen 18 CLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCR-------------------------VCE 72 (694)
T ss_pred hhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCce-------------------------eee
Confidence 4678888743 579999999999999999852 2224559999996 789
Q ss_pred cCCCCcCCCCccCCCceeecCCCCCccCCCcCCCCCCCCccCCCCCCcEe
Q 003077 580 ICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFC 629 (850)
Q Consensus 580 iC~~~d~~~~~~d~~~LL~CdqC~r~fHv~CL~~~g~~~L~evP~g~WfC 629 (850)
.|+..+ |...++.|+.|+-.||.+|..| .+..++.+.|+|
T Consensus 73 ~c~~~g------D~~kf~~Ck~cDvsyh~yc~~P----~~~~v~sg~~~c 112 (694)
T KOG4443|consen 73 ACGTTG------DPKKFLLCKRCDVSYHCYCQKP----PNDKVPSGPWLC 112 (694)
T ss_pred eccccC------CcccccccccccccccccccCC----ccccccCccccc
Confidence 998543 6888999999999999999987 688999999999
No 43
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.31 E-value=4e-07 Score=105.64 Aligned_cols=50 Identities=34% Similarity=0.932 Sum_probs=41.4
Q ss_pred ccccCCCCcCCCCccCCCceeecCCCCCccCCCcCCCCCCCCccCCCCCCcEecCCchh
Q 003077 577 GCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNR 635 (850)
Q Consensus 577 ~C~iC~~~d~~~~~~d~~~LL~CdqC~r~fHv~CL~~~g~~~L~evP~g~WfCc~~C~~ 635 (850)
.|..|++.+ .| ..+|+||.|++.||+.||.|. ...+.+|.|.||| ..|..
T Consensus 255 fCsaCn~~~----~F--~~~i~CD~Cp~sFH~~CLePP--l~~eniP~g~W~C-~ec~~ 304 (613)
T KOG4299|consen 255 FCSACNGSG----LF--NDIICCDGCPRSFHQTCLEPP--LEPENIPPGSWFC-PECKI 304 (613)
T ss_pred HHHHhCCcc----cc--ccceeecCCchHHHHhhcCCC--CCcccCCCCcccc-CCCee
Confidence 799999875 34 678999999999999999973 2367899999999 77753
No 44
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=98.30 E-value=2.9e-06 Score=83.73 Aligned_cols=76 Identities=28% Similarity=0.372 Sum_probs=64.3
Q ss_pred EEEEeEEEEE-EcC----ceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCc-cEEEecch---hhHHHHHHhccCcE
Q 003077 746 VVVSAGLLRI-FGR----EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNV-ENLVLPAA---EKAESIWTKKFGFR 816 (850)
Q Consensus 746 ~~V~aA~lri-~g~----~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv-~~LvL~A~---~~A~~~w~~kfGF~ 816 (850)
+++|....++ .+. ..++|-.+||+|+|||+|+|++|+..+++.+...+. +.++|... ..|+.+|+ ++||+
T Consensus 72 ~~~G~~~~~~~~~~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~Ai~lY~-~~GF~ 150 (177)
T COG0456 72 KVVGFLLVRVVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYR-KLGFE 150 (177)
T ss_pred ceeEEEEEEEecCCccccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEEEEecCChHHHHHHH-HcCCE
Confidence 4677666653 332 278999999999999999999999999999999997 88888777 57999999 99999
Q ss_pred EcCHHH
Q 003077 817 KMSRER 822 (850)
Q Consensus 817 ~i~~~~ 822 (850)
.+....
T Consensus 151 ~~~~~~ 156 (177)
T COG0456 151 VVKIRK 156 (177)
T ss_pred EEeeeh
Confidence 987754
No 45
>PHA01807 hypothetical protein
Probab=98.30 E-value=1.9e-06 Score=85.99 Aligned_cols=83 Identities=10% Similarity=0.106 Sum_probs=65.8
Q ss_pred eEEEEEEeCCEEEEeEEEEEEcC----ceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecch---hhHHHH
Q 003077 736 MYSVILTVKSVVVSAGLLRIFGR----EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA---EKAESI 808 (850)
Q Consensus 736 fy~~vl~~~~~~V~aA~lri~g~----~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~---~~A~~~ 808 (850)
-+.++++.++++||.+.+..... .+.+|..|.|+|+|||+|+|++||+.+++.++..|+..|.|... ..|..+
T Consensus 53 ~~~lva~~dg~lvG~~~l~~~~~~~~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~~~n~~a~~~ 132 (153)
T PHA01807 53 RTELLVFRDGKLAGIAVLVFEDDPHVGPCLGVQWQYVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFSHREGEGRYTIH 132 (153)
T ss_pred ceEEEEEECCEEEEEEEEEcCCCcceeeeccceeEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecCCcHHHHHH
Confidence 34466778999999999864432 24445668999999999999999999999999999999988777 567899
Q ss_pred HHhccCcEEcCHH
Q 003077 809 WTKKFGFRKMSRE 821 (850)
Q Consensus 809 w~~kfGF~~i~~~ 821 (850)
|+ .|++.+.+
T Consensus 133 y~---~~~~~~~~ 142 (153)
T PHA01807 133 YR---RVKPYGQE 142 (153)
T ss_pred HH---hcCccCCc
Confidence 99 44555543
No 46
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.30 E-value=2.4e-06 Score=91.99 Aligned_cols=76 Identities=18% Similarity=0.173 Sum_probs=65.1
Q ss_pred CCEEEEeEEEEEEc--CceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecch---hhHHHHHHhccCcEEc
Q 003077 744 KSVVVSAGLLRIFG--REVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA---EKAESIWTKKFGFRKM 818 (850)
Q Consensus 744 ~~~~V~aA~lri~g--~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~---~~A~~~w~~kfGF~~i 818 (850)
++++||.+.+++.. .++++|-.++|+++|||||+|++||..+++.++..|+..+.+... ..|..||+ |+||+..
T Consensus 208 ~~~~vG~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~y~-k~GF~~~ 286 (292)
T TIGR03448 208 PGELLGFHWTKVHPDEPALGEVYVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRTYE-KLGFTVA 286 (292)
T ss_pred CCcEEEEEEEEecCCCCceeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHHH-HcCCEEc
Confidence 68999987666543 246888889999999999999999999999999999999887664 47999999 9999986
Q ss_pred CH
Q 003077 819 SR 820 (850)
Q Consensus 819 ~~ 820 (850)
+.
T Consensus 287 ~~ 288 (292)
T TIGR03448 287 EV 288 (292)
T ss_pred cc
Confidence 54
No 47
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.29 E-value=2.7e-06 Score=91.65 Aligned_cols=81 Identities=9% Similarity=0.005 Sum_probs=65.6
Q ss_pred EEEEEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecch-hhHHHHHHhccCc
Q 003077 737 YSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA-EKAESIWTKKFGF 815 (850)
Q Consensus 737 y~~vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~-~~A~~~w~~kfGF 815 (850)
+.+|.+.++++||.+.+.......+++-.++|+|+|||+|+|++||..+++.+. +.-.|.+... ..|+.||+ ++||
T Consensus 47 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~l~V~p~~rg~GiG~~Ll~~~~~~~~--~~~~~~~~~~n~~a~~fy~-~~Gf 123 (292)
T TIGR03448 47 RHLVAVDSDPIVGYANLVPARGTDPAMAELVVHPAHRRRGIGRALIRALLAKGG--GRLRVWAHGDLPAARALAS-RLGL 123 (292)
T ss_pred eEEEEEECCEEEEEEEEEcCCCCcceEEEEEECHhhcCCCHHHHHHHHHHHhcc--CceEEEEcCCCHHHHHHHH-HCCC
Confidence 455667889999999988765555788899999999999999999999999875 2234444443 67999999 9999
Q ss_pred EEcCH
Q 003077 816 RKMSR 820 (850)
Q Consensus 816 ~~i~~ 820 (850)
+.+..
T Consensus 124 ~~~~~ 128 (292)
T TIGR03448 124 VPTRE 128 (292)
T ss_pred EEccE
Confidence 98865
No 48
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=98.28 E-value=3.1e-06 Score=76.24 Aligned_cols=77 Identities=21% Similarity=0.251 Sum_probs=59.3
Q ss_pred EeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEe--cchhhHHHHHHhccCcEEcC
Q 003077 742 TVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVL--PAAEKAESIWTKKFGFRKMS 819 (850)
Q Consensus 742 ~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL--~A~~~A~~~w~~kfGF~~i~ 819 (850)
..+++.++.+...+..+. ++|-.|.|.|+|||+|||+.|+.+|.+.+.+.|..-+.. ..-..|+.+|+ |+||+.+.
T Consensus 4 ~f~~~~~~l~~~~~~~~~-g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~~~l~v~~~N~~s~~ly~-klGf~~~~ 81 (86)
T PF08445_consen 4 VFDGELVALVAWIIRSDD-GEIGGVYTLPEHRRRGLGSALVAALARELLERGKTPFLYVDADNEASIRLYE-KLGFREIE 81 (86)
T ss_dssp EECTCCEEEEEEEEESCT-CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSEEEEEEETT-HHHHHHHH-HCT-EEEE
T ss_pred EEECCccceeeEeeeCCC-cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHH-HcCCEEEE
Confidence 344566777776666666 999999999999999999999999999998888775332 23357899999 99999875
Q ss_pred H
Q 003077 820 R 820 (850)
Q Consensus 820 ~ 820 (850)
+
T Consensus 82 ~ 82 (86)
T PF08445_consen 82 E 82 (86)
T ss_dssp E
T ss_pred E
Confidence 3
No 49
>PRK10514 putative acetyltransferase; Provisional
Probab=98.28 E-value=2.7e-06 Score=81.66 Aligned_cols=86 Identities=19% Similarity=0.174 Sum_probs=63.8
Q ss_pred EeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEEcCHH
Q 003077 742 TVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRKMSRE 821 (850)
Q Consensus 742 ~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~~A~~~w~~kfGF~~i~~~ 821 (850)
..++++||.+.+.. .++..++|.++|||+|+|++||+.+++.+.. +...+...-..|..||+ |+||+..+..
T Consensus 56 ~~~~~~iG~~~~~~-----~~~~~~~v~p~~rgkGig~~Ll~~~~~~~~~--i~~~v~~~N~~a~~~ye-k~Gf~~~~~~ 127 (145)
T PRK10514 56 DERDQPVGFMLLSG-----GHMEALFVDPDVRGCGVGRMLVEHALSLHPE--LTTDVNEQNEQAVGFYK-KMGFKVTGRS 127 (145)
T ss_pred ecCCcEEEEEEEec-----CcEeEEEECHHhccCCHHHHHHHHHHHhccc--cEEEeecCCHHHHHHHH-HCCCEEeccc
Confidence 46789999887642 3466899999999999999999999997643 33444455578999999 9999998876
Q ss_pred HHHhhhccceEEee
Q 003077 822 RLLKYQRDFQLTIF 835 (850)
Q Consensus 822 ~~~~~~~~~~l~~F 835 (850)
.....-..++++.|
T Consensus 128 ~~~~~~~~~~~~~~ 141 (145)
T PRK10514 128 EVDDQGRPYPLLHL 141 (145)
T ss_pred ccCCCCCccceEEE
Confidence 54433233444444
No 50
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=98.25 E-value=3.7e-06 Score=99.52 Aligned_cols=85 Identities=15% Similarity=0.169 Sum_probs=68.8
Q ss_pred ceEEEEEEe--CCEEEEeEEEEEE------cCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecc---hh
Q 003077 735 GMYSVILTV--KSVVVSAGLLRIF------GREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPA---AE 803 (850)
Q Consensus 735 Gfy~~vl~~--~~~~V~aA~lri~------g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A---~~ 803 (850)
+.+.+|.+. +|++||.+.+..+ ....++|-.|+|+++|||||+|++||..+++.+++.|+.++.|.. -.
T Consensus 122 ~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N~ 201 (547)
T TIGR03103 122 AITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDNE 201 (547)
T ss_pred CceEEEEEECCCCeEEEEEEEEeccccccCCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCCH
Confidence 445555554 6999999875322 123478899999999999999999999999999999999987654 47
Q ss_pred hHHHHHHhccCcEEcCH
Q 003077 804 KAESIWTKKFGFRKMSR 820 (850)
Q Consensus 804 ~A~~~w~~kfGF~~i~~ 820 (850)
.|..||+ |+||+.++.
T Consensus 202 ~Ai~fY~-klGf~~~~~ 217 (547)
T TIGR03103 202 QAIALYE-KLGFRRIPV 217 (547)
T ss_pred HHHHHHH-HCCCEEeeE
Confidence 8999999 999998754
No 51
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=98.20 E-value=9.8e-06 Score=78.81 Aligned_cols=88 Identities=18% Similarity=0.214 Sum_probs=71.6
Q ss_pred cceEEEEEEeCCEEEEeEEEEE------EcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhC-CccEEEecch---h
Q 003077 734 GGMYSVILTVKSVVVSAGLLRI------FGREVAELPLVATCREYQGKGCFQALFSCIERLLCSL-NVENLVLPAA---E 803 (850)
Q Consensus 734 ~Gfy~~vl~~~~~~V~aA~lri------~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~l-gv~~LvL~A~---~ 803 (850)
.+.+.+|++.||++||-+.+.- .....+.+-.+++.++|||||+|+.+|.++++.+... ++++|++... .
T Consensus 46 ~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~ 125 (152)
T PF13523_consen 46 PGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGDRGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDNT 125 (152)
T ss_dssp TTEEEEEEEETTEEEEEEEEEEGGGSS---TTEEEEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-H
T ss_pred CCceEEEEEECCEEEEEEEEecccccccCCCCEEEEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCCH
Confidence 5678889999999999887632 1455778999999999999999999999999998876 8999998887 4
Q ss_pred hHHHHHHhccCcEEcCHHH
Q 003077 804 KAESIWTKKFGFRKMSRER 822 (850)
Q Consensus 804 ~A~~~w~~kfGF~~i~~~~ 822 (850)
-|+.+|+ |+||+.++.-+
T Consensus 126 ~~~~~~~-k~GF~~~g~~~ 143 (152)
T PF13523_consen 126 RAIRLYE-KAGFRKVGEFE 143 (152)
T ss_dssp HHHHHHH-HTT-EEEEEEE
T ss_pred HHHHHHH-HcCCEEeeEEE
Confidence 8899999 99999988653
No 52
>PRK10562 putative acetyltransferase; Provisional
Probab=98.16 E-value=6.8e-06 Score=79.54 Aligned_cols=77 Identities=12% Similarity=0.093 Sum_probs=59.8
Q ss_pred EEEEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEE
Q 003077 738 SVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRK 817 (850)
Q Consensus 738 ~~vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~~A~~~w~~kfGF~~ 817 (850)
.+++..++++||.+.+... ..+-.++|.++|||+|||++||..+++.+..+.+ .+...-..|..||+ |+||+.
T Consensus 50 ~~v~~~~~~~iG~~~~~~~----~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~--~v~~~N~~s~~~y~-k~Gf~~ 122 (145)
T PRK10562 50 TWVWEEDGKLLGFVSVLEG----RFVGALFVAPKAVRRGIGKALMQHVQQRYPHLSL--EVYQKNQRAVNFYH-AQGFRI 122 (145)
T ss_pred EEEEEECCEEEEEEEEeec----cEEEEEEECHHHcCCCHHHHHHHHHHhhCCeEEE--EEEcCChHHHHHHH-HCCCEE
Confidence 3455678999999887432 3577899999999999999999999997654322 23344568899999 999999
Q ss_pred cCHH
Q 003077 818 MSRE 821 (850)
Q Consensus 818 i~~~ 821 (850)
++..
T Consensus 123 ~~~~ 126 (145)
T PRK10562 123 VDSA 126 (145)
T ss_pred cccc
Confidence 9864
No 53
>PRK01346 hypothetical protein; Provisional
Probab=98.15 E-value=7.1e-06 Score=93.20 Aligned_cols=81 Identities=19% Similarity=0.166 Sum_probs=69.3
Q ss_pred EEEEEeCCEEEEeEEEEEE------cC--ceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHH
Q 003077 738 SVILTVKSVVVSAGLLRIF------GR--EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIW 809 (850)
Q Consensus 738 ~~vl~~~~~~V~aA~lri~------g~--~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~~A~~~w 809 (850)
.+++++++++||.+.+..+ +. ..+.|-.|||.|+|||+|+|++||..+++.+++.|+..++|.+.. ..||
T Consensus 49 ~~va~~~~~lvg~~~~~~~~~~~~~~~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~~--~~~Y 126 (411)
T PRK01346 49 TLGAFDGDEVVGTAGAFDLRLTVPGGAVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRERGEPVAALTASE--GGIY 126 (411)
T ss_pred eEEEEECCEEEEEEEEeccccccCCCCccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECCc--hhhH
Confidence 4566789999999987543 22 468899999999999999999999999999999999998888765 4799
Q ss_pred HhccCcEEcCHH
Q 003077 810 TKKFGFRKMSRE 821 (850)
Q Consensus 810 ~~kfGF~~i~~~ 821 (850)
. +|||......
T Consensus 127 ~-r~Gf~~~~~~ 137 (411)
T PRK01346 127 G-RFGYGPATYS 137 (411)
T ss_pred h-hCCCeeccce
Confidence 9 9999988764
No 54
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.14 E-value=5.5e-07 Score=107.37 Aligned_cols=48 Identities=40% Similarity=1.034 Sum_probs=42.0
Q ss_pred CCcccccccccCCCceeeeCCCCCccCccccCCC--CCCCCCcccccCCC
Q 003077 505 GGSDDMCHVCGDGENLLLCNGCPLAFHAACLDPL--LIPESGWRCPNCRQ 552 (850)
Q Consensus 505 ~~~dd~C~vCgdgG~Ll~Cd~C~~afH~~Cl~p~--~vp~g~W~C~~C~~ 552 (850)
..+...|.+|+++|++++|+.|+.+||..|++++ ..|.+.|.|++|..
T Consensus 44 ~~~~e~c~ic~~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~ 93 (696)
T KOG0383|consen 44 DAEQEACRICADGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFC 93 (696)
T ss_pred hhhhhhhhhhcCCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeecc
Confidence 3456889999999999999999999999999975 56667899999954
No 55
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=98.14 E-value=5.4e-07 Score=105.29 Aligned_cols=103 Identities=27% Similarity=0.669 Sum_probs=75.0
Q ss_pred CcccccccccC-----CCceeeeCCCCCccCccccCCCCCCCCCcccccCCCCCC-----C----Ccc------------
Q 003077 506 GSDDMCHVCGD-----GENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQGHS-----S----SMS------------ 559 (850)
Q Consensus 506 ~~dd~C~vCgd-----gG~Ll~Cd~C~~afH~~Cl~p~~vp~g~W~C~~C~~~~~-----~----ea~------------ 559 (850)
+++-.|.+|.. +.+|++||.|....|+.|+|+..+|+|.|.|..|..+.. + +++
T Consensus 269 dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Calg~~ppCvLCPkkGGamK~~~sgT~wAHv 348 (893)
T KOG0954|consen 269 DEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEVPEGPWLCRTCALGIEPPCVLCPKKGGAMKPTKSGTKWAHV 348 (893)
T ss_pred cccceeceecCCCccccceeEEeccchhHHHHhhhceeecCCCCeeehhccccCCCCeeeccccCCcccccCCCCeeeEe
Confidence 57788999974 358999999999999999999999999999999976211 1 122
Q ss_pred -----------------ccccccCCccCCCCCc-cccccCCCCcCCCCccCCCceeecC--CCCCccCCCcCCCCCCCC
Q 003077 560 -----------------RSVDLKGGLEAPGAEV-GGCVICRSHDFSAATFDDRTVIYCD--QCEKEFHVGCLRKNGLCD 618 (850)
Q Consensus 560 -----------------dpI~~~r~~~~~~~e~-~~C~iC~~~d~~~~~~d~~~LL~Cd--qC~r~fHv~CL~~~g~~~ 618 (850)
.|| +.....++... ..|.+|+.. .+..|+|. .|.-.||+.|...+|+..
T Consensus 349 sCALwIPEVsie~~ekmePI--tkfs~IpesRwslvC~LCk~k--------~GACIqCs~k~C~t~fHv~CA~~aG~~~ 417 (893)
T KOG0954|consen 349 SCALWIPEVSIECPEKMEPI--TKFSHIPESRWSLVCNLCKVK--------SGACIQCSNKTCRTAFHVTCAFEAGLEM 417 (893)
T ss_pred eeeeccceeeccCHhhcCcc--cccCCCcHHHHHHHHHHhccc--------CcceEEecccchhhhccchhhhhcCCee
Confidence 222 00111111111 479999854 57788887 899999999999888743
No 56
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=98.12 E-value=7.5e-06 Score=96.10 Aligned_cols=76 Identities=17% Similarity=0.250 Sum_probs=64.9
Q ss_pred CCEEEEeEEEEEEcCceE-----------EEeEeEe--------eccccccChhHHHHHHHHHHHhhCCccEEEecchhh
Q 003077 744 KSVVVSAGLLRIFGREVA-----------ELPLVAT--------CREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEK 804 (850)
Q Consensus 744 ~~~~V~aA~lri~g~~~A-----------Elp~vAt--------~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~~ 804 (850)
++.+||-.++|....+.. ||-..++ .++|||+|+|++||+++|++|++.|++.|.|.+...
T Consensus 422 ~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~G~~~i~v~s~~~ 501 (522)
T TIGR01211 422 NDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEEGSEKILVISGIG 501 (522)
T ss_pred CCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHCCCCEEEEeeCch
Confidence 679999999987654322 5555444 589999999999999999999999999999999999
Q ss_pred HHHHHHhccCcEEcCH
Q 003077 805 AESIWTKKFGFRKMSR 820 (850)
Q Consensus 805 A~~~w~~kfGF~~i~~ 820 (850)
|..||. |+||...++
T Consensus 502 A~~FY~-klGf~~~g~ 516 (522)
T TIGR01211 502 VREYYR-KLGYELDGP 516 (522)
T ss_pred HHHHHH-HCCCEEEcc
Confidence 999999 999998765
No 57
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=98.12 E-value=1.2e-05 Score=63.71 Aligned_cols=61 Identities=25% Similarity=0.230 Sum_probs=55.0
Q ss_pred EEEEeCCEEEEeEEEEEEc--CceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEe
Q 003077 739 VILTVKSVVVSAGLLRIFG--REVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVL 799 (850)
Q Consensus 739 ~vl~~~~~~V~aA~lri~g--~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL 799 (850)
++++.++++||.+.+.... ...+++-.++|.++|||+|+|+.|+..+.+.+...|++++.+
T Consensus 2 ~~~~~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 2 LVAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred EEEecCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 3556789999999988765 478999999999999999999999999999999999999886
No 58
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=98.12 E-value=1.4e-05 Score=80.41 Aligned_cols=83 Identities=24% Similarity=0.210 Sum_probs=68.6
Q ss_pred EEEEEEeCCEEEEeEEEEEEc--CceEEEeEeEeeccccccChhHHHHHHHHHHHh-hCCccEEEecch---hhHHHHHH
Q 003077 737 YSVILTVKSVVVSAGLLRIFG--REVAELPLVATCREYQGKGCFQALFSCIERLLC-SLNVENLVLPAA---EKAESIWT 810 (850)
Q Consensus 737 y~~vl~~~~~~V~aA~lri~g--~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~-~lgv~~LvL~A~---~~A~~~w~ 810 (850)
+.++++.+|++||.+.+.... ...+++ .+++.++|||+|+|+.|+..+.+.+. .+|+++|++... ..|..+|+
T Consensus 58 ~~~~i~~~g~~iG~~~~~~~~~~~~~~~~-~~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~ye 136 (186)
T PRK15130 58 RRFVVECDGEKAGLVELVEINHVHRRAEF-QIIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYR 136 (186)
T ss_pred cEEEEEECCEEEEEEEEEeecCCCCeEEE-EEEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHH
Confidence 345667899999999886653 346677 48999999999999999999999876 689999988754 57899999
Q ss_pred hccCcEEcCHH
Q 003077 811 KKFGFRKMSRE 821 (850)
Q Consensus 811 ~kfGF~~i~~~ 821 (850)
|+||+..+.-
T Consensus 137 -k~GF~~~~~~ 146 (186)
T PRK15130 137 -KLGFEVEGEL 146 (186)
T ss_pred -HCCCEEEEEE
Confidence 9999998763
No 59
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=98.06 E-value=2.7e-05 Score=75.44 Aligned_cols=81 Identities=19% Similarity=0.140 Sum_probs=67.1
Q ss_pred EEEEeCCEEEEeEEEEEEc--CceEEEeEeEeeccccccChhHHHHHHHHHHHh-hCCccEEEec---chhhHHHHHHhc
Q 003077 739 VILTVKSVVVSAGLLRIFG--REVAELPLVATCREYQGKGCFQALFSCIERLLC-SLNVENLVLP---AAEKAESIWTKK 812 (850)
Q Consensus 739 ~vl~~~~~~V~aA~lri~g--~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~-~lgv~~LvL~---A~~~A~~~w~~k 812 (850)
++++.+|++||.+.+.... ...+++-.. +.+.+| +|||+.++.++++.+. .+++.+|.+. .-..|+.+|+ |
T Consensus 54 ~~~~~~g~~vG~~~~~~~~~~~~~~~~g~~-~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~-k 130 (156)
T TIGR03585 54 WIVCQESRPIGVISFTDINLVHKSAFWGIY-ANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYE-K 130 (156)
T ss_pred EEEEECCEEEEEEEEEecChhhCeEEEEEE-eChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHH-H
Confidence 4456799999999997655 456777655 889999 9999999999999987 4899999875 4478999999 9
Q ss_pred cCcEEcCHHH
Q 003077 813 FGFRKMSRER 822 (850)
Q Consensus 813 fGF~~i~~~~ 822 (850)
+||+.++...
T Consensus 131 ~Gf~~~g~~~ 140 (156)
T TIGR03585 131 FGFEREGVFR 140 (156)
T ss_pred cCCeEeeeeh
Confidence 9999988643
No 60
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=98.03 E-value=1.8e-05 Score=87.51 Aligned_cols=82 Identities=12% Similarity=0.079 Sum_probs=69.1
Q ss_pred ceEEEEEEe---CCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecch-----hhHH
Q 003077 735 GMYSVILTV---KSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA-----EKAE 806 (850)
Q Consensus 735 Gfy~~vl~~---~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~-----~~A~ 806 (850)
..|++.+.+ ++.+||.+.++. ..+.++|-.+++++.+||+|+|++||..+++.|++.|+.+|+|... ..|+
T Consensus 230 ~~~~~~~~d~~gd~givG~~~~~~-~~~~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~ 308 (320)
T TIGR01686 230 EIVTVSMSDRFGDSGIIGIFVFEK-KEGNLFIDDLCMSCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFL 308 (320)
T ss_pred CEEEEEEEecCCCCceEEEEEEEe-cCCcEEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHH
Confidence 355555443 578999998875 4567899999999999999999999999999999999999988653 5799
Q ss_pred HHHHhccCcEEc
Q 003077 807 SIWTKKFGFRKM 818 (850)
Q Consensus 807 ~~w~~kfGF~~i 818 (850)
.||+ ++||...
T Consensus 309 ~fY~-~~GF~~~ 319 (320)
T TIGR01686 309 SFYE-QIGFEDE 319 (320)
T ss_pred HHHH-HcCCccC
Confidence 9999 9999854
No 61
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=97.95 E-value=1.3e-05 Score=80.39 Aligned_cols=79 Identities=14% Similarity=0.185 Sum_probs=66.1
Q ss_pred eCCEEEEeEEE-EEEcC-ceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEEcCH
Q 003077 743 VKSVVVSAGLL-RIFGR-EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRKMSR 820 (850)
Q Consensus 743 ~~~~~V~aA~l-ri~g~-~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~~A~~~w~~kfGF~~i~~ 820 (850)
.+.++||-++| ||... ..--|..|.|.+.+||||+||.||+..|..++..|++.+.|.+..| ..||+ ++||+.-+.
T Consensus 64 ~~~~VigH~rLS~i~n~~~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~gf~~~yLsT~DQ-~~FYe-~lGYe~c~P 141 (225)
T KOG3397|consen 64 ENDEVLGHSRLSHLPNRDHALWVESVVVKKDQRGLGFGKFLMKSTEKWMREKGFNEAYLSTDDQ-CRFYE-SLGYEKCDP 141 (225)
T ss_pred cccceeeeeccccCCCCCceeEEEEEEEehhhccccHHHHHHHHHHHHHHHhhhhheeeecccc-hhhhh-hhcccccCc
Confidence 35678887777 44444 4556899999999999999999999999999999999999988755 68999 999998777
Q ss_pred HHH
Q 003077 821 ERL 823 (850)
Q Consensus 821 ~~~ 823 (850)
-+.
T Consensus 142 i~~ 144 (225)
T KOG3397|consen 142 IVH 144 (225)
T ss_pred eec
Confidence 543
No 62
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=97.95 E-value=2.4e-05 Score=83.58 Aligned_cols=84 Identities=23% Similarity=0.288 Sum_probs=69.8
Q ss_pred eEEEEEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHh-hCCccEEEecch-hhHHHHHHhcc
Q 003077 736 MYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLC-SLNVENLVLPAA-EKAESIWTKKF 813 (850)
Q Consensus 736 fy~~vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~-~lgv~~LvL~A~-~~A~~~w~~kf 813 (850)
+.++.+..+|+||+.|...-.+...|+|-.|+|.|+|||+||+.+|+.++-..+- +-...-|+..+. +.|..+|. ++
T Consensus 177 ~~~~f~~~d~~iVa~A~t~a~~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk~~~L~~~~~N~~A~~iY~-ri 255 (268)
T COG3393 177 SRTYFLEGDGKIVAKAETAAENPAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGKIPCLFVNSDNPVARRIYQ-RI 255 (268)
T ss_pred eeEEEEccCCcEEEeeeccccCCcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCCeeEEEEecCCHHHHHHHH-Hh
Confidence 4555556677999999999999999999999999999999999999998865544 444556666544 78899999 99
Q ss_pred CcEEcCH
Q 003077 814 GFRKMSR 820 (850)
Q Consensus 814 GF~~i~~ 820 (850)
||+.+++
T Consensus 256 GF~~~g~ 262 (268)
T COG3393 256 GFREIGE 262 (268)
T ss_pred CCeecce
Confidence 9999874
No 63
>smart00258 SAND SAND domain.
Probab=97.93 E-value=4.4e-06 Score=73.09 Aligned_cols=62 Identities=26% Similarity=0.347 Sum_probs=55.4
Q ss_pred eEE-EeCCEEeeeeEEeCCceecCCC-CCccCccccccccCCcccCCCCceeEccCCcchHHHHH
Q 003077 432 LTY-IVKGQRLRFGCKQGNGIVCDCC-NKEISPSQFEAHAGMAARRQPYRHIYTSNGMTLHDIAI 494 (850)
Q Consensus 432 v~Y-~~kGq~~l~G~~qg~gI~C~cC-~~~~Sps~FE~hAG~~~rr~Py~~I~~~~G~sL~~l~~ 494 (850)
|++ .++|.++++.+++|...+|+.+ ++|+||++||.+||+...++|..+|+ .+|.+|..++.
T Consensus 5 V~CG~~~g~L~~~kf~~G~~~kCI~~~~~~~TP~eFe~~~g~~~~K~WK~sIR-~~g~~Lr~L~~ 68 (73)
T smart00258 5 VTCGTVKGILYKKKFKCGISVKCIQYEDKWFTPKEFEIEGGKGKSKDWKRSIR-CGGSSLRTLME 68 (73)
T ss_pred eeeCCeeeeeeHhhhhcCcccCCccCCCEEEChHHHHhhcCCcccCCcchhee-ECCccHHHHHH
Confidence 555 5688999999999988999977 78999999999999999999999998 89999998875
No 64
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=97.92 E-value=2.7e-06 Score=89.94 Aligned_cols=45 Identities=36% Similarity=0.984 Sum_probs=39.1
Q ss_pred cccccccccC---CCceeeeCCCCCccCccccCCC--CCCCCCcccccCC
Q 003077 507 SDDMCHVCGD---GENLLLCNGCPLAFHAACLDPL--LIPESGWRCPNCR 551 (850)
Q Consensus 507 ~dd~C~vCgd---gG~Ll~Cd~C~~afH~~Cl~p~--~vp~g~W~C~~C~ 551 (850)
....|.+||. ..+|++||.|+++||.+||.|+ ..|+|.|.|..|.
T Consensus 280 eck~csicgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG 329 (336)
T KOG1244|consen 280 ECKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCL 329 (336)
T ss_pred ecceeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHH
Confidence 4468999984 3689999999999999999985 6789999999995
No 65
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.92 E-value=3.8e-06 Score=98.62 Aligned_cols=55 Identities=38% Similarity=0.962 Sum_probs=46.6
Q ss_pred CCCccccccCCCCcCCCCccCCCceeecCCCCCc-cCCCcCCCCCCCCccCCCCCCcEecCCchhHH
Q 003077 572 GAEVGGCVICRSHDFSAATFDDRTVIYCDQCEKE-FHVGCLRKNGLCDLKEIPKDKWFCCDDCNRIH 637 (850)
Q Consensus 572 ~~e~~~C~iC~~~d~~~~~~d~~~LL~CdqC~r~-fHv~CL~~~g~~~L~evP~g~WfCc~~C~~i~ 637 (850)
..+...|.+|..++ .+..||+||.|... ||++||.+ +|.++|-+.|+| ..|.-+.
T Consensus 212 ~~E~~~C~IC~~~D------pEdVLLLCDsCN~~~YH~YCLDP----dl~eiP~~eWYC-~NC~dL~ 267 (1134)
T KOG0825|consen 212 SQEEVKCDICTVHD------PEDVLLLCDSCNKVYYHVYCLDP----DLSESPVNEWYC-TNCSLLE 267 (1134)
T ss_pred ccccccceeeccCC------hHHhheeecccccceeeccccCc----ccccccccceec-Ccchhhh
Confidence 34456899999876 36789999999988 99999997 799999999999 8997543
No 66
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=97.83 E-value=8.1e-05 Score=75.53 Aligned_cols=84 Identities=11% Similarity=0.228 Sum_probs=67.1
Q ss_pred eEEEEEEeCCEEEEeEEEEEEcC---ceEEEeEeEeeccccccChhHHHHHHHHHHHhh-CCccEEEecch---hhHHHH
Q 003077 736 MYSVILTVKSVVVSAGLLRIFGR---EVAELPLVATCREYQGKGCFQALFSCIERLLCS-LNVENLVLPAA---EKAESI 808 (850)
Q Consensus 736 fy~~vl~~~~~~V~aA~lri~g~---~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~-lgv~~LvL~A~---~~A~~~ 808 (850)
.|.++...++++||.+.+..... ..+||- +.+.++|||||||+.++.++.+.+.. +|+++|.+.+. .-|..+
T Consensus 77 ~~~i~~~~~~~~iG~i~l~~~~~~~~~~~eig-~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l 155 (194)
T PRK10809 77 YFALLDPDEKEIIGVANFSNVVRGSFHACYLG-YSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDL 155 (194)
T ss_pred EEEEEECCCCeEEEEEEEEeecCCCeeeEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHH
Confidence 34444445789999999876543 345544 56899999999999999999999976 89999998886 578899
Q ss_pred HHhccCcEEcCHH
Q 003077 809 WTKKFGFRKMSRE 821 (850)
Q Consensus 809 w~~kfGF~~i~~~ 821 (850)
|+ |+||+..+..
T Consensus 156 ~e-k~Gf~~~g~~ 167 (194)
T PRK10809 156 LA-RLGFEKEGYA 167 (194)
T ss_pred HH-HCCCcEEeee
Confidence 99 9999987753
No 67
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.82 E-value=5.1e-06 Score=67.30 Aligned_cols=49 Identities=35% Similarity=0.953 Sum_probs=36.2
Q ss_pred ccccCCCCcCCCCccCCCceeecCCCCCccCCCcCCCCCCCCccCCCCCCcEecCCch
Q 003077 577 GCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCN 634 (850)
Q Consensus 577 ~C~iC~~~d~~~~~~d~~~LL~CdqC~r~fHv~CL~~~g~~~L~evP~g~WfCc~~C~ 634 (850)
.|.+|++.+ +++.||+|+.|.++||..|+.+... ....+...|+| ..|.
T Consensus 1 ~C~vC~~~~------~~~~~i~C~~C~~~~H~~C~~~~~~--~~~~~~~~w~C-~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSD------DDGDMIQCDSCNRWYHQECVGPPEK--AEEIPSGDWYC-PNCR 49 (51)
T ss_dssp EBTTTTSSC------TTSSEEEBSTTSCEEETTTSTSSHS--HHSHHSSSBSS-HHHH
T ss_pred eCcCCCCcC------CCCCeEEcCCCChhhCcccCCCChh--hccCCCCcEEC-cCCc
Confidence 378888743 5789999999999999999986421 12334459999 5664
No 68
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=97.81 E-value=7.5e-05 Score=75.85 Aligned_cols=82 Identities=24% Similarity=0.276 Sum_probs=68.0
Q ss_pred EEEEEeCCEEEEeEEEEE--Ec-C--ceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhc
Q 003077 738 SVILTVKSVVVSAGLLRI--FG-R--EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKK 812 (850)
Q Consensus 738 ~~vl~~~~~~V~aA~lri--~g-~--~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~~A~~~w~~k 812 (850)
.+|..++|++|+..++-- ++ . .+.=|--+||+++|||||+|++||...++.|+.+|...+++--. ..+|. +
T Consensus 48 slVA~d~g~vvG~Il~s~v~~~g~~~~~~~LaPLaV~p~~qg~GIG~~Lvr~~le~a~~~G~~~v~vlGd---p~YY~-r 123 (171)
T COG3153 48 SLVAEDDGEVVGHILFSPVTVGGEELGWLGLAPLAVDPEYQGQGIGSALVREGLEALRLAGASAVVVLGD---PTYYS-R 123 (171)
T ss_pred eEEEeeCCEEEEEEEEeEEEecCcccceEEEEeEEEchhhcCCcHHHHHHHHHHHHHHHCCCCEEEEecC---ccccc-c
Confidence 345577899999888743 23 1 35557789999999999999999999999999999999998777 56786 9
Q ss_pred cCcEEcCHHHH
Q 003077 813 FGFRKMSRERL 823 (850)
Q Consensus 813 fGF~~i~~~~~ 823 (850)
|||+......+
T Consensus 124 fGF~~~~~~~l 134 (171)
T COG3153 124 FGFEPAAGAKL 134 (171)
T ss_pred cCcEEcccccc
Confidence 99999988754
No 69
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=97.80 E-value=5.3e-06 Score=100.70 Aligned_cols=123 Identities=21% Similarity=0.349 Sum_probs=85.8
Q ss_pred CcccccccccCCCceeeeCCCCCccCccccCCC--CCCCCCcccccCCCCCCCCc----------cccccccCCccC---
Q 003077 506 GSDDMCHVCGDGENLLLCNGCPLAFHAACLDPL--LIPESGWRCPNCRQGHSSSM----------SRSVDLKGGLEA--- 570 (850)
Q Consensus 506 ~~dd~C~vCgdgG~Ll~Cd~C~~afH~~Cl~p~--~vp~g~W~C~~C~~~~~~ea----------~dpI~~~r~~~~--- 570 (850)
.-+|.|.+|.+.|.++||..||+.||..|..++ .+|+..|.|..|....-.++ .+.||..-+--+
T Consensus 342 ~~ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~hkvngvvd~vl~~~K~~~~iR~~~iG~dr~g 421 (1414)
T KOG1473|consen 342 EYDDHCRFCHDLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIHKVNGVVDCVLPPSKNVDSIRHTPIGRDRYG 421 (1414)
T ss_pred eecccccccCcccceeecccCCceEEeeecCCccccCCCccchhhhhhhhccCcccccccChhhcccceeccCCCcCccc
Confidence 346899999999999999999999999999975 68899999999975322221 122222211111
Q ss_pred --CCCCccccccCCCCcCCCCccCCCceeecCC-CCCccCC-CcCCCCCCCCccCCCCCCcEecCCchhHHHHH
Q 003077 571 --PGAEVGGCVICRSHDFSAATFDDRTVIYCDQ-CEKEFHV-GCLRKNGLCDLKEIPKDKWFCCDDCNRIHAAL 640 (850)
Q Consensus 571 --~~~e~~~C~iC~~~d~~~~~~d~~~LL~Cdq-C~r~fHv-~CL~~~g~~~L~evP~g~WfCc~~C~~i~~~L 640 (850)
-......|.+|+. +++++.|+. |++.||. .||...- --..++.+-|+| .+|-.-+.+|
T Consensus 422 r~ywfi~rrl~Ie~~---------det~l~yysT~pqly~ll~cLd~~~--~e~~L~d~i~~~-~ee~~rqM~l 483 (1414)
T KOG1473|consen 422 RKYWFISRRLRIEGM---------DETLLWYYSTCPQLYHLLRCLDRTY--VEMYLCDGIWER-REEIIRQMGL 483 (1414)
T ss_pred cchhceeeeeEEecC---------CCcEEEEecCcHHHHHHHHHhchHH--HHHhhccchhhh-HHHHHHhccc
Confidence 1122357999984 578899997 9999998 9997321 123567888999 7775544333
No 70
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=97.80 E-value=0.00014 Score=72.68 Aligned_cols=81 Identities=10% Similarity=0.094 Sum_probs=66.1
Q ss_pred EEEEeCCEEEEeEEEEEEcC--ceEEEeEeEeeccccccChhHHHHHHHHHHHh-hCCccEEEecch---hhHHHHHHhc
Q 003077 739 VILTVKSVVVSAGLLRIFGR--EVAELPLVATCREYQGKGCFQALFSCIERLLC-SLNVENLVLPAA---EKAESIWTKK 812 (850)
Q Consensus 739 ~vl~~~~~~V~aA~lri~g~--~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~-~lgv~~LvL~A~---~~A~~~w~~k 812 (850)
+++..++++||.+.+..... ..+++-. .+.++|||||||+.++.++.+.+. .+|+++|.+.+. ..+..+|+ |
T Consensus 70 ~~i~~~~~~iG~~~l~~~~~~~~~~~ig~-~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~e-k 147 (179)
T PRK10151 70 FMIFKEDELIGVLSFNRIEPLNKTAYIGY-WLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVAL-R 147 (179)
T ss_pred EEEEECCEEEEEEEEEeeccCCCceEEEE-EEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHH-H
Confidence 44456899999999876543 5688865 689999999999999999999876 578999887655 56889999 9
Q ss_pred cCcEEcCHH
Q 003077 813 FGFRKMSRE 821 (850)
Q Consensus 813 fGF~~i~~~ 821 (850)
+||+..+..
T Consensus 148 ~Gf~~~g~~ 156 (179)
T PRK10151 148 NGFTLEGCL 156 (179)
T ss_pred CCCEEEeEe
Confidence 999987764
No 71
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=97.76 E-value=0.00025 Score=67.19 Aligned_cols=80 Identities=18% Similarity=0.244 Sum_probs=65.5
Q ss_pred ceEEEEEEe--CCEEEEeEEEEEE--cCceEEEeEeEeeccccccChhHHHHHHHHHHH-hhCCccEEEecch---hhHH
Q 003077 735 GMYSVILTV--KSVVVSAGLLRIF--GREVAELPLVATCREYQGKGCFQALFSCIERLL-CSLNVENLVLPAA---EKAE 806 (850)
Q Consensus 735 Gfy~~vl~~--~~~~V~aA~lri~--g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l-~~lgv~~LvL~A~---~~A~ 806 (850)
|.+.+++.. ++++||...++.. ....+||. +.+.++|||+|||+.++..+.+.+ ..+|+.+|..... ..+.
T Consensus 55 ~~~~~~i~~~~~~~~iG~i~~~~~~~~~~~~eig-~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~ 133 (142)
T PF13302_consen 55 GYYYFAIEDKDDGEIIGFIGLYNIDKNNNWAEIG-YWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASR 133 (142)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEEEETTTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHH
T ss_pred cceEEEEEeccCCceEEEeeeeecccCCCccccc-cchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHH
Confidence 466666664 3589999999544 46899999 669999999999999999999999 7999999987776 4677
Q ss_pred HHHHhccCcE
Q 003077 807 SIWTKKFGFR 816 (850)
Q Consensus 807 ~~w~~kfGF~ 816 (850)
.+++ |+||+
T Consensus 134 ~~~~-k~GF~ 142 (142)
T PF13302_consen 134 RLLE-KLGFE 142 (142)
T ss_dssp HHHH-HTT-E
T ss_pred HHHH-HcCCC
Confidence 8888 99996
No 72
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=97.72 E-value=0.00019 Score=74.47 Aligned_cols=87 Identities=17% Similarity=0.172 Sum_probs=61.6
Q ss_pred cceEEEEEEeCC--EEEEeEEEEEEc-------------------------------------CceEEEeEeEeeccccc
Q 003077 734 GGMYSVILTVKS--VVVSAGLLRIFG-------------------------------------REVAELPLVATCREYQG 774 (850)
Q Consensus 734 ~Gfy~~vl~~~~--~~V~aA~lri~g-------------------------------------~~~AElp~vAt~~~~Rg 774 (850)
-+...+++..++ ++++|+-+-.-| -..+.|-||||.|++|+
T Consensus 25 P~h~l~~l~~~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~g~RIvRIAvhP~~q~ 104 (196)
T PF13718_consen 25 PNHRLFVLLQPGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLSGARIVRIAVHPDLQR 104 (196)
T ss_dssp TTEEEEEEE-SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSEEEEEEEEEE-CCC-S
T ss_pred CcceeehhccCCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhcceeEEEEEEChhhhc
Confidence 356677888777 888888876553 13688999999999999
Q ss_pred cChhHHHHHHHHHHH-------------------------hhCCccEEE--ecchhhHHHHHHhccCcEEcCHH
Q 003077 775 KGCFQALFSCIERLL-------------------------CSLNVENLV--LPAAEKAESIWTKKFGFRKMSRE 821 (850)
Q Consensus 775 qG~gr~L~~~iE~~l-------------------------~~lgv~~Lv--L~A~~~A~~~w~~kfGF~~i~~~ 821 (850)
+|||++|++.+++.+ +.-+|..|= -.+.++...||. |.||.++-=.
T Consensus 105 ~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtSFG~t~~Ll~FW~-k~gf~pv~l~ 177 (196)
T PF13718_consen 105 MGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTSFGATPELLKFWQ-KNGFVPVYLG 177 (196)
T ss_dssp SSHHHHHHHHHHHT-----------------------------S-SEEEEEEE--HHHHHHHH-CTT-EEEEE-
T ss_pred CCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEeccCCCHHHHHHHH-HCCcEEEEEe
Confidence 999999999999999 467777654 345689999999 9999987543
No 74
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.62 E-value=1.4e-05 Score=84.96 Aligned_cols=82 Identities=21% Similarity=0.485 Sum_probs=57.5
Q ss_pred EeCCceecCCCCCccCccccccccCCcccCCCCceeEccCCcchHHHHHHhhccCcccCCCcccccccccCC---Cceee
Q 003077 446 KQGNGIVCDCCNKEISPSQFEAHAGMAARRQPYRHIYTSNGMTLHDIAISLAMGQRRTTGGSDDMCHVCGDG---ENLLL 522 (850)
Q Consensus 446 ~qg~gI~C~cC~~~~Sps~FE~hAG~~~rr~Py~~I~~~~G~sL~~l~~~l~~~~~~~~~~~dd~C~vCgdg---G~Ll~ 522 (850)
+..+-|.|..|....+|+..+..-...+ +. ....+.+ -....|.+|+.. .++++
T Consensus 275 r~~S~I~C~~C~~~~HP~Ci~M~~elv~------------------~~--KTY~W~C---~~C~lC~IC~~P~~E~E~~F 331 (381)
T KOG1512|consen 275 RRNSWIVCKPCATRPHPYCVAMIPELVG------------------QY--KTYFWKC---SSCELCRICLGPVIESEHLF 331 (381)
T ss_pred hhccceeecccccCCCCcchhcCHHHHh------------------HH--hhcchhh---cccHhhhccCCcccchheec
Confidence 3445699999988888876553321110 00 0111121 234679999864 69999
Q ss_pred eCCCCCccCccccCCCCCCCCCcccc-cC
Q 003077 523 CNGCPLAFHAACLDPLLIPESGWRCP-NC 550 (850)
Q Consensus 523 Cd~C~~afH~~Cl~p~~vp~g~W~C~-~C 550 (850)
||.|+++||.+|+|+..+|.|.|.|. +|
T Consensus 332 CD~CDRG~HT~CVGL~~lP~G~WICD~~C 360 (381)
T KOG1512|consen 332 CDVCDRGPHTLCVGLQDLPRGEWICDMRC 360 (381)
T ss_pred cccccCCCCccccccccccCccchhhhHH
Confidence 99999999999999999999999998 45
No 75
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.57 E-value=2.5e-05 Score=63.22 Aligned_cols=42 Identities=40% Similarity=1.170 Sum_probs=35.2
Q ss_pred ccccccC---CCceeeeCCCCCccCccccCCC----CCCCCCcccccCC
Q 003077 510 MCHVCGD---GENLLLCNGCPLAFHAACLDPL----LIPESGWRCPNCR 551 (850)
Q Consensus 510 ~C~vCgd---gG~Ll~Cd~C~~afH~~Cl~p~----~vp~g~W~C~~C~ 551 (850)
+|.+|+. .++++.|+.|.+.||..|++++ ..+.+.|+|+.|.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 4778875 6799999999999999999985 3345699999995
No 76
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.57 E-value=0.00044 Score=70.22 Aligned_cols=109 Identities=16% Similarity=0.154 Sum_probs=77.6
Q ss_pred ceecceEEEEEEeC-CEEEEeEEEEEEcC-----ceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEec--ch
Q 003077 731 QEFGGMYSVILTVK-SVVVSAGLLRIFGR-----EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLP--AA 802 (850)
Q Consensus 731 ~~~~Gfy~~vl~~~-~~~V~aA~lri~g~-----~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~--A~ 802 (850)
..=.||+.+|+..+ |+++|=|.+..+.. .++|. .|.+++++||+|+|++|++++.+.+..+|+..++-- +.
T Consensus 47 ~~~~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~tve~-SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I~~~ 125 (169)
T COG1247 47 RTRDGYPVVVAEEEDGKVLGYASAGPFRERPAYRHTVEL-SIYLDPAARGKGLGKKLLQALITEARALGVRELVAGIESD 125 (169)
T ss_pred cccCCceEEEEEcCCCeEEEEEEeeeccCccccceEEEE-EEEECcccccccHHHHHHHHHHHHHHhCCeEEEEEEEcCC
Confidence 33357999998765 99999988877643 45554 578999999999999999999999999999887632 22
Q ss_pred -hhHHHHHHhccCcEEcCHHHHHhhhccceEEeecCcceecccc
Q 003077 803 -EKAESIWTKKFGFRKMSRERLLKYQRDFQLTIFKGTSMLEKKV 845 (850)
Q Consensus 803 -~~A~~~w~~kfGF~~i~~~~~~~~~~~~~l~~F~gt~ml~K~l 845 (850)
..-..+.+ ++||+..+....-.+. .-.+=.+.++|+.|
T Consensus 126 n~aSi~lh~-~~GF~~~G~~~~vg~k----~g~wld~~~~~~~l 164 (169)
T COG1247 126 NLASIALHE-KLGFEEVGTFPEVGDK----FGRWLDLVLMQLLL 164 (169)
T ss_pred CcHhHHHHH-HCCCEEeccccccccc----cceEEeeeeeehhh
Confidence 33345666 9999999984332221 12333445556555
No 77
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=97.45 E-value=0.00085 Score=66.58 Aligned_cols=88 Identities=19% Similarity=0.217 Sum_probs=71.7
Q ss_pred eecceEEEEEEe-CCEEEEeEEEEEE-----cCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEE---Eecch
Q 003077 732 EFGGMYSVILTV-KSVVVSAGLLRIF-----GREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENL---VLPAA 802 (850)
Q Consensus 732 ~~~Gfy~~vl~~-~~~~V~aA~lri~-----g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~L---vL~A~ 802 (850)
.|.=.+.+.++. +.+|+|-|.+..+ +.+.--|.=+.|+++|||+|+|+.|++.+-+.|..+|..++ ++.--
T Consensus 50 ~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~~k~~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vldwN 129 (163)
T KOG3216|consen 50 PFKHWLVAAIETSGEVVAGFALYFNNYSTWLGKQGIYLEDLYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLDWN 129 (163)
T ss_pred CccEEEEEEEecCCCceeEEeeeecccccccccceEEEEeeEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEeccc
Confidence 344455555554 8899999987653 45667788999999999999999999999999999999875 55666
Q ss_pred hhHHHHHHhccCcEEcCH
Q 003077 803 EKAESIWTKKFGFRKMSR 820 (850)
Q Consensus 803 ~~A~~~w~~kfGF~~i~~ 820 (850)
.-|+.+|+ +.|++....
T Consensus 130 ~rAi~lY~-k~gaq~l~~ 146 (163)
T KOG3216|consen 130 HRAILLYE-KVGAQDLKE 146 (163)
T ss_pred hhHHHHHH-HhCccccce
Confidence 89999999 999988766
No 79
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.43 E-value=5.4e-05 Score=88.57 Aligned_cols=102 Identities=25% Similarity=0.573 Sum_probs=69.7
Q ss_pred ccccccc---CCCceeeeCCCCCccCccccCCC--CCCCCCcccccCCCCCCCCccccccccCC-----ccCCCCCcccc
Q 003077 509 DMCHVCG---DGENLLLCNGCPLAFHAACLDPL--LIPESGWRCPNCRQGHSSSMSRSVDLKGG-----LEAPGAEVGGC 578 (850)
Q Consensus 509 d~C~vCg---dgG~Ll~Cd~C~~afH~~Cl~p~--~vp~g~W~C~~C~~~~~~ea~dpI~~~r~-----~~~~~~e~~~C 578 (850)
-.|..|+ |...+++|+.|+-+||-+|..|+ .++.|.|+|+.|..+.+++..-|-...++ ...+......|
T Consensus 69 rvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c~qc~~~lpg~s~~~~~~~~~~~~c~s~~~c 148 (694)
T KOG4443|consen 69 RVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTRCRQCDSTLPGLSLDLQEGYLQCAPCASLSYC 148 (694)
T ss_pred eeeeeccccCCcccccccccccccccccccCCccccccCcccccHHHHhhhhccccccccchhhhccCcccccccccccC
Confidence 4566666 55689999999999999999984 79999999999977666654222211222 22233334566
Q ss_pred ccCCCCcCCCCccCCCceeecCCCCCccCCCcCCC
Q 003077 579 VICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRK 613 (850)
Q Consensus 579 ~iC~~~d~~~~~~d~~~LL~CdqC~r~fHv~CL~~ 613 (850)
.+|...... -+...|++|++|.+|-|-.|-.-
T Consensus 149 Pvc~~~Y~~---~e~~~~~~c~~c~rwsh~~c~~~ 180 (694)
T KOG4443|consen 149 PVCLIVYQD---SESLPMVCCSICQRWSHGGCDGI 180 (694)
T ss_pred chHHHhhhh---ccchhhHHHHHhcccccCCCCcc
Confidence 666654311 12334699999999999999753
No 80
>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control. These include proteins linked to various human diseases, such as the Sp100 (Speckled protein 100 kDa), NUDR (Nuclear DEAF-1 related), GMEB (Glucocorticoid Modulatory Element Binding) proteins and AIRE-1 (Autoimmune regulator 1) proteins. Proteins containing the SAND domain have a modular structure; the SAND domain can be associated with a number of other modules, including the bromodomain, the PHD finger and the MYND finger. Because no SAND domain has been found in yeast, it is thought that the SAND domain could be restricted to animal phyla. Many SAND domain-containing proteins, including NUDR, DEAF-1 (Deformed epidermal autoregulatory factor-1) and GMEB, have been shown to bind DNA sequences specifically. The SAND domain has been proposed to mediate the DNA binding activity of these proteins [, ]. The resolution of the 3D structure of the SAND domain from Sp100b has revealed that it consists of a novel alpha/beta fold. The SAND domain adopts a compact fold consisting of a strongly twisted, five-stranded antiparallel beta-sheet with four alpha-helices packing against one side of the beta-sheet. The opposite side of the beta-sheet is solvent exposed. The beta-sheet and alpha-helical parts of the structure form two distinct regions. Multiple hydrophobic residues pack between these regions to form a structural core. A conserved KDWK sequence motif is found within the alpha-helical, positively charged surface patch. The DNA binding surface has been mapped to the alpha-helical region encompassing the KDWK motif [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1OQJ_B 1UFN_A 1H5P_A.
Probab=97.34 E-value=1.2e-05 Score=72.29 Aligned_cols=63 Identities=30% Similarity=0.385 Sum_probs=50.1
Q ss_pred eeEE-EeCCEEeeeeE-EeCCceecCCC-CCccCccccccccCCcccCCCCceeEccCCcchHHHHH
Q 003077 431 RLTY-IVKGQRLRFGC-KQGNGIVCDCC-NKEISPSQFEAHAGMAARRQPYRHIYTSNGMTLHDIAI 494 (850)
Q Consensus 431 ~v~Y-~~kGq~~l~G~-~qg~gI~C~cC-~~~~Sps~FE~hAG~~~rr~Py~~I~~~~G~sL~~l~~ 494 (850)
+|++ .++|.++++.+ .+|...+|+.+ ++|+||++||.++|+...++|+.+|+ .+|.+|..++.
T Consensus 12 pVtCG~~~G~L~~~k~~~~g~~~kCI~~~g~~~TP~eFE~~~G~~~sK~WK~SIr-~~g~~L~~li~ 77 (82)
T PF01342_consen 12 PVTCGDVKGTLYKKKFVKQGICGKCIQCEGRWFTPSEFERHGGKGSSKDWKRSIR-CGGEPLGKLIE 77 (82)
T ss_dssp EEEETTEEEEEEHHHH-TTGTTSS-EEETTEEE-HHHHHHHHTTCTCS-HHHHSE-ETTEEHHHHHH
T ss_pred eeEeCCeEEEEEHHHhhcccccCceEeeCCcEECHHHHHhhcCcccCCCCCccEE-ECCEEHHHHHh
Confidence 3666 46788888888 77777778754 88999999999999999999999999 59999998764
No 81
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.22 E-value=0.00015 Score=85.70 Aligned_cols=46 Identities=37% Similarity=0.915 Sum_probs=39.1
Q ss_pred cccccccccCC---CceeeeCCCCCc-cCccccCCC--CCCCCCcccccCCC
Q 003077 507 SDDMCHVCGDG---ENLLLCNGCPLA-FHAACLDPL--LIPESGWRCPNCRQ 552 (850)
Q Consensus 507 ~dd~C~vCgdg---G~Ll~Cd~C~~a-fH~~Cl~p~--~vp~g~W~C~~C~~ 552 (850)
...-|.+|+.. .-||+||.|..+ ||.+||+|+ ++|-+.|||+.|.-
T Consensus 214 E~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~d 265 (1134)
T KOG0825|consen 214 EEVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSL 265 (1134)
T ss_pred ccccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchh
Confidence 34569999843 479999999999 999999985 59999999999964
No 82
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.12 E-value=0.00018 Score=78.42 Aligned_cols=42 Identities=29% Similarity=0.831 Sum_probs=37.8
Q ss_pred ccccccCCCceeeeCC--CC-CccCccccCCCCCCCCCcccccCCC
Q 003077 510 MCHVCGDGENLLLCNG--CP-LAFHAACLDPLLIPESGWRCPNCRQ 552 (850)
Q Consensus 510 ~C~vCgdgG~Ll~Cd~--C~-~afH~~Cl~p~~vp~g~W~C~~C~~ 552 (850)
+|. |...|+++-||. |+ ..||..|+|+...|.|.|||+.|..
T Consensus 223 ~Cn-qvsyg~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~ 267 (274)
T KOG1973|consen 223 ICN-QVSYGKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKA 267 (274)
T ss_pred Eec-ccccccccccCCCCCCcceEEEeccccccCCCCcccchhhhh
Confidence 355 667899999999 99 9999999999999999999999964
No 83
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=97.03 E-value=0.0021 Score=69.70 Aligned_cols=78 Identities=18% Similarity=0.312 Sum_probs=70.1
Q ss_pred EEEEEE-eCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCc
Q 003077 737 YSVILT-VKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGF 815 (850)
Q Consensus 737 y~~vl~-~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~~A~~~w~~kfGF 815 (850)
|+++.+ +|+++|+|+.+ .|. -|.-|||++.+||-|+.-.|+..+..++-++|..+|++-+-++...++. .+||
T Consensus 37 ~~v~~~~~~~~iiacGsi--aGn---vikcvAvs~s~qGeGl~lkl~TeLin~ay~~g~~hLFiyTKp~~~~lFk-~~GF 110 (352)
T COG3053 37 YFVAIYRDNEEIIACGSI--AGN---VIKCVAVSESLQGEGLALKLVTELINLAYERGRTHLFIYTKPEYAALFK-QCGF 110 (352)
T ss_pred EEEEEEcCCCcEEEeccc--ccc---eeEEEEechhcccccHHHHHHHHHHHHHHHcCCceEEEEechhHHHHHH-hCCc
Confidence 444556 56999999996 465 3899999999999999999999999999999999999999999999999 9999
Q ss_pred EEcCH
Q 003077 816 RKMSR 820 (850)
Q Consensus 816 ~~i~~ 820 (850)
..+..
T Consensus 111 ~~i~~ 115 (352)
T COG3053 111 SEIAS 115 (352)
T ss_pred eEeec
Confidence 99876
No 84
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=96.84 E-value=0.0066 Score=65.99 Aligned_cols=79 Identities=16% Similarity=0.046 Sum_probs=57.5
Q ss_pred EEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEEcC
Q 003077 740 ILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRKMS 819 (850)
Q Consensus 740 vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~~A~~~w~~kfGF~~i~ 819 (850)
++..++++|+.|.-.....+.+||- |+|.++|||||+++++-.++...+.+.|+--.+=-+-..-..+=+ ||||+...
T Consensus 169 ~i~~~~~iVs~~~s~~~~~~~~EI~-I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~P~WDc~N~~S~~lA~-kLGf~~~~ 246 (265)
T PF12746_consen 169 CILHDGEIVSGCSSYFVYENGIEID-IETHPEYRGKGLATAVAAAFILECLENGLYPSWDCHNLASIALAE-KLGFHFDF 246 (265)
T ss_dssp EEEETTEEEEEEEEEEEETTEEEEE-EEE-CCCTTSSHHHHHHHHHHHHHHHTT-EEE-EESSHHHHHHHH-HCT--EEE
T ss_pred EEEECCEEEEEEEEEEEECCEEEEE-EEECHHhhcCCHHHHHHHHHHHHHHHCCCCcCeeCCCHHHHHHHH-HcCCcccc
Confidence 3356899999887777777788986 789999999999999999999999999988777543333334444 99998754
Q ss_pred H
Q 003077 820 R 820 (850)
Q Consensus 820 ~ 820 (850)
+
T Consensus 247 ~ 247 (265)
T PF12746_consen 247 E 247 (265)
T ss_dssp E
T ss_pred e
Confidence 3
No 85
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=96.82 E-value=0.00044 Score=75.38 Aligned_cols=36 Identities=42% Similarity=0.973 Sum_probs=31.2
Q ss_pred CCceeecCC--CC-CccCCCcCCCCCCCCccCCCCCCcEecCCchh
Q 003077 593 DRTVIYCDQ--CE-KEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNR 635 (850)
Q Consensus 593 ~~~LL~Cdq--C~-r~fHv~CL~~~g~~~L~evP~g~WfCc~~C~~ 635 (850)
.+.|+-||. |+ .|||..|+. |...|.|.|||+ .|..
T Consensus 229 yg~Mi~CDn~~C~~eWFH~~CVG------L~~~PkgkWyC~-~C~~ 267 (274)
T KOG1973|consen 229 YGKMIGCDNPGCPIEWFHFTCVG------LKTKPKGKWYCP-RCKA 267 (274)
T ss_pred cccccccCCCCCCcceEEEeccc------cccCCCCcccch-hhhh
Confidence 688999997 99 999999996 778899999995 6643
No 86
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=96.65 E-value=0.0017 Score=66.94 Aligned_cols=61 Identities=20% Similarity=0.281 Sum_probs=55.6
Q ss_pred eEEEeEeEeeccccccChhHHHHHHHHHHHhhCC-ccEEEecch---hhHHHHHHhccCcEEcCHH
Q 003077 760 VAELPLVATCREYQGKGCFQALFSCIERLLCSLN-VENLVLPAA---EKAESIWTKKFGFRKMSRE 821 (850)
Q Consensus 760 ~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lg-v~~LvL~A~---~~A~~~w~~kfGF~~i~~~ 821 (850)
+.-|..++|.+.||.+|+|+.|++.+.+.+...+ .+++.|+++ ..|..||+ ++||+.+..-
T Consensus 89 ~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~-~~gF~~~~~~ 153 (187)
T KOG3138|consen 89 VIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYE-KRGFEIVERL 153 (187)
T ss_pred eeEEEeecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHH-hcCceEeecc
Confidence 5668999999999999999999999999999999 888888887 68999999 9999998874
No 87
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=96.63 E-value=0.012 Score=57.49 Aligned_cols=89 Identities=20% Similarity=0.291 Sum_probs=70.5
Q ss_pred cceEEEEEEeCC--EEEEeEEEEEEc----CceEEEeEeEeeccccccChhHHHHHHHHHHHhh-CCccEEEecch---h
Q 003077 734 GGMYSVILTVKS--VVVSAGLLRIFG----REVAELPLVATCREYQGKGCFQALFSCIERLLCS-LNVENLVLPAA---E 803 (850)
Q Consensus 734 ~Gfy~~vl~~~~--~~V~aA~lri~g----~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~-lgv~~LvL~A~---~ 803 (850)
.+.|.++...++ ++||...+..+. .+.+++-..- .++|+||||+...+.++.+.+-. +++.+|++-.. .
T Consensus 64 ~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~ig~~l-~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~ 142 (187)
T COG1670 64 GGAFAIELKATGDGELIGVIGLSDIDRAANGDLAEIGYWL-DPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENE 142 (187)
T ss_pred CceEEEEEEeCCCCeEEEEEEEEEeccccccceEEEEEEE-ChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCH
Confidence 355666666544 999999998655 5677777665 99999999999999999998766 99999887766 4
Q ss_pred hHHHHHHhccCcEEcCHHHHH
Q 003077 804 KAESIWTKKFGFRKMSRERLL 824 (850)
Q Consensus 804 ~A~~~w~~kfGF~~i~~~~~~ 824 (850)
-+...++ |+||+..+.....
T Consensus 143 ~S~rv~e-k~Gf~~eg~~~~~ 162 (187)
T COG1670 143 ASIRVYE-KLGFRLEGELRQH 162 (187)
T ss_pred HHHHHHH-HcCChhhhhhhhc
Confidence 6678888 9999998875443
No 88
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=96.63 E-value=0.008 Score=53.49 Aligned_cols=69 Identities=12% Similarity=0.085 Sum_probs=55.8
Q ss_pred EEEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHH
Q 003077 739 VILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWT 810 (850)
Q Consensus 739 ~vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~~A~~~w~ 810 (850)
|.+..+|+.+|....+. ++++..|--.-|.+++||||+|+.|++++.+.+++.|.+-+ |..+-|..+..
T Consensus 2 F~~~~~g~~~a~l~Y~~-~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~kv~--p~C~y~~~~~~ 70 (78)
T PF14542_consen 2 FELKDDGEEIAELTYRE-DGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGLKVV--PTCSYVAKYFR 70 (78)
T ss_dssp EEEESSTTEEEEEEEEE-SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-EEE--ETSHHHHHHHH
T ss_pred EEEEECCEEEEEEEEEe-CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCEEE--EECHHHHHHHH
Confidence 34577789999999976 88899999999999999999999999999999999998744 55555554443
No 89
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=96.62 E-value=0.007 Score=56.48 Aligned_cols=73 Identities=16% Similarity=0.171 Sum_probs=61.6
Q ss_pred cceEEEEEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHH
Q 003077 734 GGMYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWT 810 (850)
Q Consensus 734 ~Gfy~~vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~~A~~~w~ 810 (850)
+++|++ ..+|+.++.++.-..|.+..-|.--.|..++||||++++|+....+.+++.|.+ ++|..+-|...|.
T Consensus 15 ~~~y~~--~~~G~~~~e~~y~~~~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~k--iiP~Csf~~a~~~ 87 (99)
T COG2388 15 NGRYVL--TDEGEVIGEATYYDRGENLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLK--IIPLCSFAVATYF 87 (99)
T ss_pred ceEEEE--ecCCcEEEEEEEecCCCCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCe--EcccchHHHHHHH
Confidence 567775 788999999998888989999999999999999999999999999999999985 5566654444443
No 90
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=96.62 E-value=0.00093 Score=70.86 Aligned_cols=44 Identities=39% Similarity=1.084 Sum_probs=36.5
Q ss_pred ccccCCCCcCCCCccCCCceeecC--CCCC-ccCCCcCCCCCCCCccCCCCCCcEecCCchh
Q 003077 577 GCVICRSHDFSAATFDDRTVIYCD--QCEK-EFHVGCLRKNGLCDLKEIPKDKWFCCDDCNR 635 (850)
Q Consensus 577 ~C~iC~~~d~~~~~~d~~~LL~Cd--qC~r-~fHv~CL~~~g~~~L~evP~g~WfCc~~C~~ 635 (850)
+| +|.+. ..+.|+-|| .|++ |||..|+. |++.|+|.|+| ++|+.
T Consensus 223 YC-fCqqv-------SyGqMVaCDn~nCkrEWFH~~CVG------Lk~pPKG~WYC-~eCk~ 269 (271)
T COG5034 223 YC-FCQQV-------SYGQMVACDNANCKREWFHLECVG------LKEPPKGKWYC-PECKK 269 (271)
T ss_pred EE-Eeccc-------ccccceecCCCCCchhheeccccc------cCCCCCCcEeC-HHhHh
Confidence 44 57765 368899999 7985 89999996 88999999999 89975
No 91
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=96.62 E-value=0.015 Score=56.54 Aligned_cols=80 Identities=18% Similarity=0.227 Sum_probs=56.0
Q ss_pred eEEEEEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecch------hhHHHHH
Q 003077 736 MYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA------EKAESIW 809 (850)
Q Consensus 736 fy~~vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~------~~A~~~w 809 (850)
+|++ .-|+.++||+.+.+.|. .++|.-+.|++.=||+|.|+.|++.+.+.+. +|....|.+. ..+..-+
T Consensus 40 l~aA--rFNdRlLgAv~v~~~~~-~~~L~~l~VRevTRrRGVG~yLlee~~rq~p--~i~~w~l~~~~~~~~~~~~~~~F 114 (128)
T PF12568_consen 40 LFAA--RFNDRLLGAVKVTISGQ-QAELSDLCVREVTRRRGVGLYLLEEVLRQLP--DIKHWWLADEGVEPQDRAVMAAF 114 (128)
T ss_dssp EEEE--EETTEEEEEEEEEEETT-EEEEEEEEE-TT-SSSSHHHHHHHHHHHHS---S--EEEE--TT-S--THHHHHHH
T ss_pred EEEE--EechheeeeEEEEEcCc-ceEEeeEEEeeccccccHHHHHHHHHHHHCC--CCcEEEEecCCCcccchHHHHHH
Confidence 4444 78999999999998655 7999999999999999999999999999994 4555444433 2334444
Q ss_pred HhccCcEEcCH
Q 003077 810 TKKFGFRKMSR 820 (850)
Q Consensus 810 ~~kfGF~~i~~ 820 (850)
...+||...++
T Consensus 115 m~a~GF~~~~~ 125 (128)
T PF12568_consen 115 MQACGFSAQSD 125 (128)
T ss_dssp HHHHT-EE-SS
T ss_pred HHHcCccccCC
Confidence 44999987653
No 92
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=96.48 E-value=0.0033 Score=53.12 Aligned_cols=44 Identities=25% Similarity=0.314 Sum_probs=40.4
Q ss_pred eEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCc
Q 003077 766 VATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGF 815 (850)
Q Consensus 766 vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~~A~~~w~~kfGF 815 (850)
++|.++|||+|+|+.|+..+++.++..|+. ....+..+|. ++||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~-----~~~~~~~~~~-~~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGIS-----LNRLALEVYE-KNGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCce-----ehHHHHHHHH-hcCC
Confidence 999999999999999999999999998887 5667788898 9998
No 93
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.43 E-value=0.0033 Score=76.32 Aligned_cols=60 Identities=17% Similarity=0.159 Sum_probs=50.0
Q ss_pred EEEeEeEeeccccccChhHHHHHHHHHHHh-hCCccEEEecchhhHHHHHHhccCcEEcCHH
Q 003077 761 AELPLVATCREYQGKGCFQALFSCIERLLC-SLNVENLVLPAAEKAESIWTKKFGFRKMSRE 821 (850)
Q Consensus 761 AElp~vAt~~~~RgqG~gr~L~~~iE~~l~-~lgv~~LvL~A~~~A~~~w~~kfGF~~i~~~ 821 (850)
+.|-||||.|++|++|||++|++.|++.++ .+..=-.--.+.++..+||. |.||.++-=.
T Consensus 532 ~RIvRIAvhPe~q~~GiGsrlL~~l~~~a~~~~DwlgvsFG~t~~L~rFW~-rnGF~pVhls 592 (758)
T COG1444 532 WRIVRIAVHPELQRMGIGSRLLALLIEEARKGLDWLGVSFGYTEELLRFWL-RNGFVPVHLS 592 (758)
T ss_pred eeEEEEEeCHHHHhcCHHHHHHHHHHHHHhcCCCEEeeccCCCHHHHHHHH-HcCeEEEEec
Confidence 678899999999999999999999999996 33333344567799999999 9999988653
No 94
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=96.39 E-value=0.0028 Score=63.02 Aligned_cols=62 Identities=15% Similarity=0.225 Sum_probs=53.0
Q ss_pred CceEEEeEeEeeccccccChhHHHHHH-HHHHHhhCCccEEEecchhhHHHHHHhccCcEEcCH
Q 003077 758 REVAELPLVATCREYQGKGCFQALFSC-IERLLCSLNVENLVLPAAEKAESIWTKKFGFRKMSR 820 (850)
Q Consensus 758 ~~~AElp~vAt~~~~RgqG~gr~L~~~-iE~~l~~lgv~~LvL~A~~~A~~~w~~kfGF~~i~~ 820 (850)
...+.|-.+|+.++||.||++..|+.. |..+...-=+++++|=+-.-.++||+ +|||+.+++
T Consensus 99 g~ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h~pLvPFYE-r~gFk~vgp 161 (190)
T KOG4144|consen 99 GHNIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICHDPLVPFYE-RFGFKAVGP 161 (190)
T ss_pred CcceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeecCCccchhH-hcCceeecc
Confidence 334778899999999999999999987 55555555677899999999999999 999999998
No 95
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=96.35 E-value=0.0061 Score=55.72 Aligned_cols=74 Identities=23% Similarity=0.266 Sum_probs=58.4
Q ss_pred EEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccE--EEecchhhHHHHHHhccCcEEc
Q 003077 741 LTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVEN--LVLPAAEKAESIWTKKFGFRKM 818 (850)
Q Consensus 741 l~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~--LvL~A~~~A~~~w~~kfGF~~i 818 (850)
|--+|.|||=.. -+..+||+.-+|.|+|||||+.+.++....+.|..+|+.- -+..+-..++.+-. ++||..+
T Consensus 4 lgpeG~PVSW~l----mdqtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P~Y~hv~~~N~~~~r~~~-~lg~~~~ 78 (89)
T PF08444_consen 4 LGPEGNPVSWSL----MDQTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFPFYGHVDEDNEASQRLSK-SLGFIFM 78 (89)
T ss_pred cCCCCCEeEEEE----ecccccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCCeEeehHhccHHHHHHHH-HCCCeec
Confidence 335688888655 4568999999999999999999999999999999999984 22333355566666 8898877
Q ss_pred C
Q 003077 819 S 819 (850)
Q Consensus 819 ~ 819 (850)
+
T Consensus 79 p 79 (89)
T PF08444_consen 79 P 79 (89)
T ss_pred C
Confidence 5
No 96
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=96.34 E-value=0.0086 Score=61.54 Aligned_cols=83 Identities=24% Similarity=0.323 Sum_probs=62.1
Q ss_pred EEEEEEeCCEEEEeEEEEEE---cCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEe---cchhhHHHHHH
Q 003077 737 YSVILTVKSVVVSAGLLRIF---GREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVL---PAAEKAESIWT 810 (850)
Q Consensus 737 y~~vl~~~~~~V~aA~lri~---g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL---~A~~~A~~~w~ 810 (850)
|.+.....+++||-+.+|.- |..++=.=-|=+.++|||+|+|+.||+.+|.++.....+.++| ..-.-|.+||.
T Consensus 94 Yi~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~~N~~al~Fy~ 173 (202)
T KOG2488|consen 94 YICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADSRHMRKVMLTVFSENIRALGFYH 173 (202)
T ss_pred EEEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHHHHHhhhheeeeecccchhHHHHH
Confidence 44333333489999999873 3334444445566799999999999999999999888886654 34478899999
Q ss_pred hccCcEEcCH
Q 003077 811 KKFGFRKMSR 820 (850)
Q Consensus 811 ~kfGF~~i~~ 820 (850)
++||-+...
T Consensus 174 -~~gf~~~~~ 182 (202)
T KOG2488|consen 174 -RLGFVVDEE 182 (202)
T ss_pred -HcCcccCCC
Confidence 999988765
No 97
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=96.17 E-value=0.0023 Score=68.00 Aligned_cols=45 Identities=29% Similarity=0.864 Sum_probs=37.0
Q ss_pred CcccccccccC--CCceeeeCC--CCC-ccCccccCCCCCCCCCcccccCC
Q 003077 506 GSDDMCHVCGD--GENLLLCNG--CPL-AFHAACLDPLLIPESGWRCPNCR 551 (850)
Q Consensus 506 ~~dd~C~vCgd--gG~Ll~Cd~--C~~-afH~~Cl~p~~vp~g~W~C~~C~ 551 (850)
++.-+|. |.. -|+|+-||+ |.+ .||..|+++...|+|.|||+.|+
T Consensus 219 ~e~lYCf-CqqvSyGqMVaCDn~nCkrEWFH~~CVGLk~pPKG~WYC~eCk 268 (271)
T COG5034 219 GEELYCF-CQQVSYGQMVACDNANCKREWFHLECVGLKEPPKGKWYCPECK 268 (271)
T ss_pred CceeEEE-ecccccccceecCCCCCchhheeccccccCCCCCCcEeCHHhH
Confidence 3444554 554 489999998 876 58999999999999999999996
No 98
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=96.05 E-value=0.003 Score=72.04 Aligned_cols=108 Identities=30% Similarity=0.650 Sum_probs=71.5
Q ss_pred CCccccccccc-----CCCceeeeCCCCCccCccccCCC---CCCC-------CCcccccCCCCCC---CCc---cccc-
Q 003077 505 GGSDDMCHVCG-----DGENLLLCNGCPLAFHAACLDPL---LIPE-------SGWRCPNCRQGHS---SSM---SRSV- 562 (850)
Q Consensus 505 ~~~dd~C~vCg-----dgG~Ll~Cd~C~~afH~~Cl~p~---~vp~-------g~W~C~~C~~~~~---~ea---~dpI- 562 (850)
.....+|.||- +.|+++-||.|+-..|-.|+|.. ++|. ..|||.-|..+.. ++. .+-|
T Consensus 116 pkk~~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~P~CElCPn~~Gif 195 (707)
T KOG0957|consen 116 PKKAVICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSLPHCELCPNRFGIF 195 (707)
T ss_pred cccceEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCCCccccCCCcCCcc
Confidence 34445899995 56899999999999999999962 3332 4799998877433 221 0111
Q ss_pred ---cccCCc---------------------------cCCCCCccccccCCCCcCCCCccCCCceeecC--CCCCccCCCc
Q 003077 563 ---DLKGGL---------------------------EAPGAEVGGCVICRSHDFSAATFDDRTVIYCD--QCEKEFHVGC 610 (850)
Q Consensus 563 ---~~~r~~---------------------------~~~~~e~~~C~iC~~~d~~~~~~d~~~LL~Cd--qC~r~fHv~C 610 (850)
..-||+ +.....-..|..|...-|.+ -+..+.|| .|..+||+.|
T Consensus 196 KetDigrWvH~iCALYvpGVafg~~~~l~~Vtl~em~ysk~Gak~Cs~Ced~~fAR----tGvci~CdaGMCk~YfHVTC 271 (707)
T KOG0957|consen 196 KETDIGRWVHAICALYVPGVAFGQTHTLCGVTLEEMDYSKFGAKTCSACEDKIFAR----TGVCIRCDAGMCKEYFHVTC 271 (707)
T ss_pred cccchhhHHHHHHHhhcCccccccccccccccHHHhhhhhhccchhccccchhhhh----cceeeeccchhhhhhhhhhH
Confidence 000110 00111124699999876654 45678898 8999999999
Q ss_pred CCCCCC
Q 003077 611 LRKNGL 616 (850)
Q Consensus 611 L~~~g~ 616 (850)
.+..|+
T Consensus 272 AQk~Gl 277 (707)
T KOG0957|consen 272 AQKLGL 277 (707)
T ss_pred Hhhhcc
Confidence 987665
No 99
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=96.03 E-value=0.0023 Score=72.92 Aligned_cols=47 Identities=36% Similarity=0.973 Sum_probs=40.1
Q ss_pred cccccCCCCcCCCCccCCCceeecCCCCCccCCCcCCCCCCCCccCCCC----CCcEecCCc
Q 003077 576 GGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPK----DKWFCCDDC 633 (850)
Q Consensus 576 ~~C~iC~~~d~~~~~~d~~~LL~CdqC~r~fHv~CL~~~g~~~L~evP~----g~WfCc~~C 633 (850)
..|.||++.. +...+++||.|...||.+||.| +|..+|+ ..|.| ..|
T Consensus 545 ysCgiCkks~------dQHll~~CDtC~lhYHlGCL~P----PLTR~Pkk~kn~gWqC-sEC 595 (707)
T KOG0957|consen 545 YSCGICKKST------DQHLLTQCDTCHLHYHLGCLSP----PLTRLPKKNKNFGWQC-SEC 595 (707)
T ss_pred eeeeeeccch------hhHHHhhcchhhceeeccccCC----ccccCcccccCcceee-ccc
Confidence 4799999753 5778999999999999999997 6888875 45999 888
No 100
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=95.98 E-value=0.0089 Score=66.51 Aligned_cols=87 Identities=21% Similarity=0.261 Sum_probs=68.8
Q ss_pred CCceecceEEEEEEeCCEEEEeEEEEE----EcC---ceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecc
Q 003077 729 SGQEFGGMYSVILTVKSVVVSAGLLRI----FGR---EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPA 801 (850)
Q Consensus 729 ~~~~~~Gfy~~vl~~~~~~V~aA~lri----~g~---~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A 801 (850)
+.+++.++|.+ +.|.++++-..+-. +|. ..|-|-.||+.|+|||+|+-|+|+....+.-++.|+.-.+|.+
T Consensus 34 kil~~~n~~vi--~~nqkl~s~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L~P 111 (389)
T COG4552 34 KILAEPNSYVI--YMNQKLASRLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSALHP 111 (389)
T ss_pred hhccCCcceEE--eehhhhhhcccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEecc
Confidence 45677777765 88888865433321 143 2455788999999999999999999999999999999999887
Q ss_pred hhhHHHHHHhccCcEEcCH
Q 003077 802 AEKAESIWTKKFGFRKMSR 820 (850)
Q Consensus 802 ~~~A~~~w~~kfGF~~i~~ 820 (850)
. -.+||. ||||...+.
T Consensus 112 ~--s~~iYr-KfGye~asn 127 (389)
T COG4552 112 F--SGGIYR-KFGYEYASN 127 (389)
T ss_pred C--chhhHh-hccccccce
Confidence 6 367999 999988766
No 101
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=95.92 E-value=0.0015 Score=49.99 Aligned_cols=34 Identities=32% Similarity=0.977 Sum_probs=20.7
Q ss_pred CceeeeCCCCCccCccccCCCCCCCC-CcccccCC
Q 003077 518 ENLLLCNGCPLAFHAACLDPLLIPES-GWRCPNCR 551 (850)
Q Consensus 518 G~Ll~Cd~C~~afH~~Cl~p~~vp~g-~W~C~~C~ 551 (850)
..|+.|+.|.-+.|..|.+...++.+ .|+|..|+
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCCcccCCCCCcEECCcCC
Confidence 46899999999999999999888877 89999883
No 102
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=95.86 E-value=0.026 Score=56.63 Aligned_cols=81 Identities=16% Similarity=0.205 Sum_probs=64.6
Q ss_pred EEE-eCCEEEEeEEEEEEc-----CceEEEeEeEeeccccccChhHHHHHHHHH-HHhhCCccEEEecch---hhHHHHH
Q 003077 740 ILT-VKSVVVSAGLLRIFG-----REVAELPLVATCREYQGKGCFQALFSCIER-LLCSLNVENLVLPAA---EKAESIW 809 (850)
Q Consensus 740 vl~-~~~~~V~aA~lri~g-----~~~AElp~vAt~~~~RgqG~gr~L~~~iE~-~l~~lgv~~LvL~A~---~~A~~~w 809 (850)
|.+ .+|++||-.....+. ..-.+|-.+||...||+.|++++||..-.+ +....+.+.+-|+.. ..|..+|
T Consensus 45 VA~D~~gkiVGYvlAkmee~p~~~~~hGhItSlaV~rs~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~LY 124 (193)
T KOG3235|consen 45 VAEDENGKIVGYVLAKMEEDPDDEPPHGHITSLAVKRSYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHLY 124 (193)
T ss_pred EEEcCCCcEEEEeeeehhhcccCCCCCCeeEEeeehhhHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHhh
Confidence 445 578999988776654 235789999999999999999999976443 455567788888876 5899999
Q ss_pred HhccCcEEcCH
Q 003077 810 TKKFGFRKMSR 820 (850)
Q Consensus 810 ~~kfGF~~i~~ 820 (850)
++.+||.+.+-
T Consensus 125 ~~tl~F~v~ev 135 (193)
T KOG3235|consen 125 KNTLGFVVCEV 135 (193)
T ss_pred hhccceEEeec
Confidence 99999998875
No 103
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=95.26 E-value=0.05 Score=54.58 Aligned_cols=59 Identities=15% Similarity=0.190 Sum_probs=49.1
Q ss_pred ceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCcc---EEEecchhhHHHHHHhccCcEEc
Q 003077 759 EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVE---NLVLPAAEKAESIWTKKFGFRKM 818 (850)
Q Consensus 759 ~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~---~LvL~A~~~A~~~w~~kfGF~~i 818 (850)
.-+++--|+|.|+||++|+++.||+.||+.....+.- -+|.-.-.-|+.+|+ +|||.+.
T Consensus 68 wh~HvTAltVap~~Rrl~la~~lm~~led~~d~~~a~fvDLfVr~sN~iAI~mYk-kLGY~~Y 129 (173)
T KOG3234|consen 68 WHGHVTALTVAPDYRRLGLAAKLMDTLEDVSDVDNAYFVDLFVRVSNQIAIDMYK-KLGYSVY 129 (173)
T ss_pred eeeEEEEEEechhHHHHHHHHHHHHHHHHHHHhhhhheeeeeeeccchhHHHHHH-hcCceEE
Confidence 3567888999999999999999999999998877544 445555578999999 9999864
No 104
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=95.18 E-value=0.014 Score=73.31 Aligned_cols=57 Identities=25% Similarity=0.698 Sum_probs=44.9
Q ss_pred CCccccccCCCCcCCCCccCCCceeecCCCCCccCCCcCCCCCCCCccCCCCCCcEecCCchhHHHHH
Q 003077 573 AEVGGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNRIHAAL 640 (850)
Q Consensus 573 ~e~~~C~iC~~~d~~~~~~d~~~LL~CdqC~r~fHv~CL~~~g~~~L~evP~g~WfCc~~C~~i~~~L 640 (850)
.++..|.||.+++ ..+.+.++.||.|..++|..|.. ..-+|+|.|+| ..|-.-....
T Consensus 217 ~~D~~C~iC~~~~----~~n~n~ivfCD~Cnl~VHq~Cyg------i~~ipeg~WlC-r~Cl~s~~~~ 273 (1051)
T KOG0955|consen 217 EEDAVCCICLDGE----CQNSNVIVFCDGCNLAVHQECYG------IPFIPEGQWLC-RRCLQSPQRP 273 (1051)
T ss_pred CCCccceeecccc----cCCCceEEEcCCCcchhhhhccC------CCCCCCCcEee-hhhccCcCcc
Confidence 3456899999875 44568999999999999999996 34578999999 8886554443
No 105
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=95.08 E-value=0.012 Score=58.59 Aligned_cols=24 Identities=46% Similarity=1.158 Sum_probs=21.7
Q ss_pred ccCccccCCC--CCCCCCcccccCCC
Q 003077 529 AFHAACLDPL--LIPESGWRCPNCRQ 552 (850)
Q Consensus 529 afH~~Cl~p~--~vp~g~W~C~~C~~ 552 (850)
+||..||.|+ .+|+|+|+|+.|..
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~ 26 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEV 26 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcC
Confidence 5999999985 79999999999975
No 106
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=95.06 E-value=0.011 Score=58.65 Aligned_cols=26 Identities=46% Similarity=1.103 Sum_probs=22.7
Q ss_pred ccCCCcCCCCCCCCccCCCCCCcEecCCchh
Q 003077 605 EFHVGCLRKNGLCDLKEIPKDKWFCCDDCNR 635 (850)
Q Consensus 605 ~fHv~CL~~~g~~~L~evP~g~WfCc~~C~~ 635 (850)
.||+.||+| +|.++|+|+|+| +.|..
T Consensus 1 g~H~~CL~P----pl~~~P~g~W~C-p~C~~ 26 (148)
T cd04718 1 GFHLCCLRP----PLKEVPEGDWIC-PFCEV 26 (148)
T ss_pred CcccccCCC----CCCCCCCCCcCC-CCCcC
Confidence 499999997 799999999999 67754
No 107
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=94.95 E-value=0.21 Score=53.66 Aligned_cols=95 Identities=14% Similarity=0.223 Sum_probs=73.6
Q ss_pred ccCCCCceecceEEEEEEe-CCEEEEeEEEEEE------------------------------cCceEEEeEeEeecccc
Q 003077 725 GRNISGQEFGGMYSVILTV-KSVVVSAGLLRIF------------------------------GREVAELPLVATCREYQ 773 (850)
Q Consensus 725 gr~~~~~~~~Gfy~~vl~~-~~~~V~aA~lri~------------------------------g~~~AElp~vAt~~~~R 773 (850)
+.++...|-.--|.++... +|++||++||... ...++|+=|+||.++||
T Consensus 45 ~~E~D~~D~~~~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p~e~~~~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r 124 (241)
T TIGR03694 45 GLETDEYDAHSVHSLLRHRRTGTFVGCVRLVLPNSSDPDQPFPFEKHCSHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFR 124 (241)
T ss_pred CCcCCCCCCCCcEEEEEECCCCCEEEEEEEeccccccccccccHHHHhccccchhhcCccccCCCceEEeehheECHhHh
Confidence 4455556655566555543 5899999999752 13699999999999999
Q ss_pred cc--------C--------------------hhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCc--EEcCH
Q 003077 774 GK--------G--------------------CFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGF--RKMSR 820 (850)
Q Consensus 774 gq--------G--------------------~gr~L~~~iE~~l~~lgv~~LvL~A~~~A~~~w~~kfGF--~~i~~ 820 (850)
++ | +...|+.++-+.+...|+++++.-+-+....++. ++|+ +.+++
T Consensus 125 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~l~r~l~-r~G~~~~~lG~ 200 (241)
T TIGR03694 125 RRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALSSANGITHWYAIMEPRLARLLS-RFGIQFRQVGP 200 (241)
T ss_pred CCcccccccccccccccccccchhhcccCchHHHHHHHHHHHHHHHCCCcEEEEEeCHHHHHHHH-HhCCceEEcCC
Confidence 74 2 4567999999999999999999988888888887 9996 45554
No 108
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=94.77 E-value=0.23 Score=46.73 Aligned_cols=68 Identities=10% Similarity=-0.137 Sum_probs=58.8
Q ss_pred ceEEEEEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchh
Q 003077 735 GMYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAE 803 (850)
Q Consensus 735 Gfy~~vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~ 803 (850)
....++++.+|++||++..- ...+.+.....++++++++.+.|..|+..+.+.+.+.|++.+-+....
T Consensus 70 ~~~l~~~~~~g~~va~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~g~~~~d~g~g~ 137 (142)
T PF13480_consen 70 RLRLFVLYDGGEPVAFALGF-RHGGTLYYWYGGYDPEYRKYSPGRLLLWEAIRWAIERGLRYFDFGGGN 137 (142)
T ss_pred CEEEEEEEECCEEEEEEEEE-EECCEEEEEEEEECHhhHhCCHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 35666778899999999765 455688899999999999999999999999999999999999887653
No 109
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=94.75 E-value=0.014 Score=68.98 Aligned_cols=51 Identities=31% Similarity=1.041 Sum_probs=42.0
Q ss_pred CccccccCCCCcCCCCccCCCceeecC--CCCCccCCCcCCCCCCCCccCCCCCCcEecCCchh
Q 003077 574 EVGGCVICRSHDFSAATFDDRTVIYCD--QCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNR 635 (850)
Q Consensus 574 e~~~C~iC~~~d~~~~~~d~~~LL~Cd--qC~r~fHv~CL~~~g~~~L~evP~g~WfCc~~C~~ 635 (850)
.+++|.+|-.. .+-.++.|+.|| .|.-+.|..|.. +.++|.|.||| +.|..
T Consensus 4 MVGGCCVCSDE----rGWaeNPLVYCDG~nCsVAVHQaCYG------IvqVPtGpWfC-rKCes 56 (900)
T KOG0956|consen 4 MVGGCCVCSDE----RGWAENPLVYCDGHNCSVAVHQACYG------IVQVPTGPWFC-RKCES 56 (900)
T ss_pred cccceeeecCc----CCCccCceeeecCCCceeeeehhcce------eEecCCCchhh-hhhhh
Confidence 35789999743 244588999999 899999999996 67899999999 88854
No 110
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=94.60 E-value=0.025 Score=64.94 Aligned_cols=51 Identities=16% Similarity=0.250 Sum_probs=47.2
Q ss_pred eccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEEcCH
Q 003077 769 CREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRKMSR 820 (850)
Q Consensus 769 ~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~~A~~~w~~kfGF~~i~~ 820 (850)
..++|+||||+.||+..|++|++-+.++|.+-+...+...|. ||||...+.
T Consensus 459 ~~~~QH~G~G~~L~~~AE~ia~ee~~~ki~viSgiG~ReYy~-k~GY~~~gp 509 (515)
T COG1243 459 EDEWQHRGYGRELLEEAERIAREEGAKKILVISGIGVREYYR-KLGYELDGP 509 (515)
T ss_pred cchhhcccHHHHHHHHHHHHHHhhccccEEEEecccHHHHHH-HhCccccCC
Confidence 478999999999999999999999999999999999999999 999998764
No 111
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=94.37 E-value=0.011 Score=76.75 Aligned_cols=53 Identities=34% Similarity=0.933 Sum_probs=45.9
Q ss_pred ccccccCCCCcCCCCccCCCceeecCCCCCccCCCcCCCCCCCCccCCCCCCcEecCCchhHHH
Q 003077 575 VGGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNRIHA 638 (850)
Q Consensus 575 ~~~C~iC~~~d~~~~~~d~~~LL~CdqC~r~fHv~CL~~~g~~~L~evP~g~WfCc~~C~~i~~ 638 (850)
...|.+|+..+ +...|+.|+.|..+||..|+++ .+..+|.++|+| +.|..-+.
T Consensus 1108 ~~~c~~cr~k~------~~~~m~lc~~c~~~~h~~C~rp----~~~~~~~~dW~C-~~c~~e~~ 1160 (1404)
T KOG1245|consen 1108 NALCKVCRRKK------QDEKMLLCDECLSGFHLFCLRP----ALSSVPPGDWMC-PSCRKEHR 1160 (1404)
T ss_pred hhhhhhhhhcc------cchhhhhhHhhhhhHHHHhhhh----hhccCCcCCccC-Cccchhhh
Confidence 35799999653 4678999999999999999997 688999999999 89987775
No 112
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=94.25 E-value=0.017 Score=66.71 Aligned_cols=44 Identities=39% Similarity=0.884 Sum_probs=36.5
Q ss_pred ccccccCC-----CceeeeCCCCCccCccccCCC------CCCCCCcccccCCCC
Q 003077 510 MCHVCGDG-----ENLLLCNGCPLAFHAACLDPL------LIPESGWRCPNCRQG 553 (850)
Q Consensus 510 ~C~vCgdg-----G~Ll~Cd~C~~afH~~Cl~p~------~vp~g~W~C~~C~~~ 553 (850)
.|.+|..| ..||.|++|..-||+.|+.+. ..+...|+|..|..+
T Consensus 170 qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 170 QCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred eeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence 39999744 489999999999999999984 345679999999763
No 113
>smart00258 SAND SAND domain.
Probab=93.83 E-value=0.071 Score=47.14 Aligned_cols=52 Identities=19% Similarity=0.263 Sum_probs=42.6
Q ss_pred EEeCCeEEecCCCCCCceeechhHHHHhccc-cCCCCCCcccccCCCcHHHHHHH
Q 003077 243 IVNGGGYLCGCPLCNFSKVVSAHEFEQHAGA-KTRHPNNHIYLENGKPIYSIIQE 296 (850)
Q Consensus 243 ~i~~~GilC~C~~C~~~~v~s~s~FE~HAG~-~~~~p~~~I~lenG~sL~~v~~~ 296 (850)
.....|+.+-|-.++. +-+||++||.|||. ++|.=-..|.. ||.+|+.+|+.
T Consensus 17 ~kf~~G~~~kCI~~~~-~~~TP~eFe~~~g~~~~K~WK~sIR~-~g~~Lr~L~~~ 69 (73)
T smart00258 17 KKFKCGISVKCIQYED-KWFTPKEFEIEGGKGKSKDWKRSIRC-GGSSLRTLMEN 69 (73)
T ss_pred hhhhcCcccCCccCCC-EEEChHHHHhhcCCcccCCcchheeE-CCccHHHHHHc
Confidence 3345699999999987 89999999999995 57776777754 69999998865
No 114
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=93.34 E-value=0.47 Score=48.99 Aligned_cols=92 Identities=18% Similarity=0.152 Sum_probs=68.4
Q ss_pred ccCCCCce-ecceEEEEEEeCCEEEEeEEEEEE---------------------cCceEEEeEeEeecccccc------C
Q 003077 725 GRNISGQE-FGGMYSVILTVKSVVVSAGLLRIF---------------------GREVAELPLVATCREYQGK------G 776 (850)
Q Consensus 725 gr~~~~~~-~~Gfy~~vl~~~~~~V~aA~lri~---------------------g~~~AElp~vAt~~~~Rgq------G 776 (850)
|.++..+| ..-.|.+++. +|+++|++||... +.+++|+=|+|+.++.++. -
T Consensus 34 g~E~DqyD~~~~~ylv~~~-~g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~p~~~~vwE~SRf~v~~~~~~~~~~~~~~ 112 (182)
T PF00765_consen 34 GMEIDQYDDPDAVYLVALD-DGRVVGCARLLPTTGPYMLSDVFPHLLPDGPAPRSPDVWELSRFCVDPDRRRSRAGSRSP 112 (182)
T ss_dssp SEE--TTGCTT-EEEEEEE-TTEEEEEEEEEETTS--HHHHCTGGGHTTS---SSTTEEEEEEEEE-HCCCHHCHSCC-T
T ss_pred CcEeeecCCCCCeEEEEEE-CCEEEEEeeeccCCCcchhhhHHHHHhCCCCCCCCCcceeeeEEEEcccccccccccccH
Confidence 44444444 3456777654 5999999999764 2689999999999875432 3
Q ss_pred hhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEEc
Q 003077 777 CFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRKM 818 (850)
Q Consensus 777 ~gr~L~~~iE~~l~~lgv~~LvL~A~~~A~~~w~~kfGF~~i 818 (850)
+...|+.++-+.+.+.|++.++.-+..-.+.++. ++||...
T Consensus 113 ~~~~L~~~~~e~a~~~gi~~~v~V~~~~~~r~l~-r~G~~~~ 153 (182)
T PF00765_consen 113 VTMELLLGMVEFALSNGIRHIVGVVDPAMERILR-RAGWPVR 153 (182)
T ss_dssp HHHHHHHHHHHHHHCTT-SEEEEEEEHHHHHHHH-HCT-EEE
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEChHHHHHHH-HcCCceE
Confidence 6789999999999999999999888888899999 9999754
No 115
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=93.10 E-value=0.49 Score=48.94 Aligned_cols=83 Identities=23% Similarity=0.247 Sum_probs=59.7
Q ss_pred EEEEEEeCCEEEEeEEEEEEc-------CceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHH
Q 003077 737 YSVILTVKSVVVSAGLLRIFG-------REVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIW 809 (850)
Q Consensus 737 y~~vl~~~~~~V~aA~lri~g-------~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~~A~~~w 809 (850)
|.+++..-.++|+++.+-.+. ..+--+-+.-+.|+|||+|+++.+...+-+.+.. +=...++.+...+..+|
T Consensus 48 ~~~~~KgT~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~p~yRg~~~~kl~~~~~~~~~~~-~~~N~~~~~~~~~~~~w 126 (181)
T PF06852_consen 48 VLTCLKGTDRVIATVHLIRFDPLNPSPDKPLQFIGFFWIDPEYRGKGIMKLQDDICMDELDS-VDDNSVAQGNVKMSNFW 126 (181)
T ss_pred EEEEEcCCCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeCCcccCcchHHHHHHHHHHHhcc-CCCceeeecCHHHHHHH
Confidence 444444446788877774332 2377888888999999999996444444445555 34556777888999999
Q ss_pred HhccCcEEcCH
Q 003077 810 TKKFGFRKMSR 820 (850)
Q Consensus 810 ~~kfGF~~i~~ 820 (850)
..-|||..++.
T Consensus 127 ~k~~G~~~~~h 137 (181)
T PF06852_consen 127 HKMFGFDDYGH 137 (181)
T ss_pred HHHhCCCCCcc
Confidence 99999998887
No 116
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=92.53 E-value=0.054 Score=64.84 Aligned_cols=51 Identities=31% Similarity=0.845 Sum_probs=42.1
Q ss_pred CccccccCCCCcCCCCccCCCceeecCCCCCccCCCcCCCCCCCCccCCCCCCcEecCCchh
Q 003077 574 EVGGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNR 635 (850)
Q Consensus 574 e~~~C~iC~~~d~~~~~~d~~~LL~CdqC~r~fHv~CL~~~g~~~L~evP~g~WfCc~~C~~ 635 (850)
+.-.|.+|+.+| +.+.+.|+.||.|.--.|..|.. +.++|++.|.| ..|.-
T Consensus 270 edviCDvCrspD----~e~~neMVfCd~Cn~cVHqaCyG------Ile~p~gpWlC-r~Cal 320 (893)
T KOG0954|consen 270 EDVICDVCRSPD----SEEANEMVFCDKCNICVHQACYG------ILEVPEGPWLC-RTCAL 320 (893)
T ss_pred ccceeceecCCC----ccccceeEEeccchhHHHHhhhc------eeecCCCCeee-hhccc
Confidence 445899999875 34578999999999999999986 66889999999 66654
No 117
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=92.43 E-value=0.051 Score=62.33 Aligned_cols=47 Identities=28% Similarity=0.844 Sum_probs=37.5
Q ss_pred cccccCCCCcCCCCccCCCceeecCCCCCccCCCcCCCCCCCCccCCCCCCcEecCCc
Q 003077 576 GGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDC 633 (850)
Q Consensus 576 ~~C~iC~~~d~~~~~~d~~~LL~CdqC~r~fHv~CL~~~g~~~L~evP~g~WfCc~~C 633 (850)
+.|.+|.+.+ ..+.++++.||.|+-..|..|.. +.-+|+|.|+| +.|
T Consensus 194 ~~C~~c~~t~----~eN~naiVfCdgC~i~VHq~CYG------I~f~peG~WlC-rkC 240 (669)
T COG5141 194 DICTKCTSTH----NENSNAIVFCDGCEICVHQSCYG------IQFLPEGFWLC-RKC 240 (669)
T ss_pred hhhHhccccc----cCCcceEEEecCcchhhhhhccc------ceecCcchhhh-hhh
Confidence 5788888654 23468999999999999999985 34578999998 555
No 118
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=91.97 E-value=0.038 Score=71.93 Aligned_cols=48 Identities=40% Similarity=1.068 Sum_probs=41.3
Q ss_pred CCcccccccccCC---CceeeeCCCCCccCccccCC--CCCCCCCcccccCCC
Q 003077 505 GGSDDMCHVCGDG---ENLLLCNGCPLAFHAACLDP--LLIPESGWRCPNCRQ 552 (850)
Q Consensus 505 ~~~dd~C~vCgdg---G~Ll~Cd~C~~afH~~Cl~p--~~vp~g~W~C~~C~~ 552 (850)
......|.+|... ..++.|+.|.+.||..|+.| ..+|.|+|+|+.|+.
T Consensus 1105 s~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~ 1157 (1404)
T KOG1245|consen 1105 SAVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRK 1157 (1404)
T ss_pred ccchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccch
Confidence 3455779999743 47999999999999999998 589999999999976
No 119
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=91.73 E-value=0.93 Score=47.70 Aligned_cols=95 Identities=14% Similarity=0.131 Sum_probs=70.6
Q ss_pred ccCCCCceec-ceEEEEEEeCCEEEEeEEEEEE---------------------cCceEEEeEeEeecccc---ccC---
Q 003077 725 GRNISGQEFG-GMYSVILTVKSVVVSAGLLRIF---------------------GREVAELPLVATCREYQ---GKG--- 776 (850)
Q Consensus 725 gr~~~~~~~~-Gfy~~vl~~~~~~V~aA~lri~---------------------g~~~AElp~vAt~~~~R---gqG--- 776 (850)
|.+...+|-. -.|.+....+|++||+++|-.. ..+++|+=|+|++++++ +.+
T Consensus 42 g~E~D~yD~~~~~yll~~~~~g~vvG~~RLlptt~p~ml~~~fp~l~~~~~~~~~~~v~E~SRf~V~~~~~~~~~~~~~~ 121 (207)
T PRK13834 42 GEERDQFDDLKPTYILAISDSGRVAGCARLLPAIGPTMLAQVFPQLLPAGRLNAHPAMIESSRFCVDTALAEGRGGGQLH 121 (207)
T ss_pred CcCccCCCCCCCEEEEEEeCCCeEEEEEecccCCCcchhhhhcHHhcCCCCCCCCCCEEEEeeeEEcccccccccccccC
Confidence 4455555433 4566666678899999998322 25699999999999853 222
Q ss_pred -hhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcE--EcCH
Q 003077 777 -CFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFR--KMSR 820 (850)
Q Consensus 777 -~gr~L~~~iE~~l~~lgv~~LvL~A~~~A~~~w~~kfGF~--~i~~ 820 (850)
+...|+.++-+.+...|+++++.-..+-.+.++. ++||. ++++
T Consensus 122 ~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~~~r~l~-r~G~~~~~lG~ 167 (207)
T PRK13834 122 EATLTMFAGIIEWSMANGYTEIVTATDLRFERILA-RAGWPMQRLGE 167 (207)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHH-HcCCCeEECCC
Confidence 5578999999999999999999777777778887 99964 4444
No 120
>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control. These include proteins linked to various human diseases, such as the Sp100 (Speckled protein 100 kDa), NUDR (Nuclear DEAF-1 related), GMEB (Glucocorticoid Modulatory Element Binding) proteins and AIRE-1 (Autoimmune regulator 1) proteins. Proteins containing the SAND domain have a modular structure; the SAND domain can be associated with a number of other modules, including the bromodomain, the PHD finger and the MYND finger. Because no SAND domain has been found in yeast, it is thought that the SAND domain could be restricted to animal phyla. Many SAND domain-containing proteins, including NUDR, DEAF-1 (Deformed epidermal autoregulatory factor-1) and GMEB, have been shown to bind DNA sequences specifically. The SAND domain has been proposed to mediate the DNA binding activity of these proteins [, ]. The resolution of the 3D structure of the SAND domain from Sp100b has revealed that it consists of a novel alpha/beta fold. The SAND domain adopts a compact fold consisting of a strongly twisted, five-stranded antiparallel beta-sheet with four alpha-helices packing against one side of the beta-sheet. The opposite side of the beta-sheet is solvent exposed. The beta-sheet and alpha-helical parts of the structure form two distinct regions. Multiple hydrophobic residues pack between these regions to form a structural core. A conserved KDWK sequence motif is found within the alpha-helical, positively charged surface patch. The DNA binding surface has been mapped to the alpha-helical region encompassing the KDWK motif [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1OQJ_B 1UFN_A 1H5P_A.
Probab=91.40 E-value=0.076 Score=48.00 Aligned_cols=55 Identities=24% Similarity=0.502 Sum_probs=39.5
Q ss_pred EEEEEe-----CCeEEecCCCCCCceeechhHHHHhcccc-CCCCCCcccccCCCcHHHHHHH
Q 003077 240 LDGIVN-----GGGYLCGCPLCNFSKVVSAHEFEQHAGAK-TRHPNNHIYLENGKPIYSIIQE 296 (850)
Q Consensus 240 l~G~i~-----~~GilC~C~~C~~~~v~s~s~FE~HAG~~-~~~p~~~I~lenG~sL~~v~~~ 296 (850)
++|++. ..|+...|-.++ .+-+||.+||.|||.. +|+=-..|.. +|.+|..+|++
T Consensus 18 ~~G~L~~~k~~~~g~~~kCI~~~-g~~~TP~eFE~~~G~~~sK~WK~SIr~-~g~~L~~li~~ 78 (82)
T PF01342_consen 18 VKGTLYKKKFVKQGICGKCIQCE-GRWFTPSEFERHGGKGSSKDWKRSIRC-GGEPLGKLIEK 78 (82)
T ss_dssp EEEEEEHHHH-TTGTTSS-EEET-TEEE-HHHHHHHHTTCTCS-HHHHSEE-TTEEHHHHHHT
T ss_pred eEEEEEHHHhhcccccCceEeeC-CcEECHHHHHhhcCcccCCCCCccEEE-CCEEHHHHHhh
Confidence 466665 455566666677 5889999999999977 4545667888 89999998864
No 121
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=91.24 E-value=0.34 Score=49.43 Aligned_cols=66 Identities=12% Similarity=0.056 Sum_probs=51.9
Q ss_pred eEEEEEEeCCEEEEeEEEEEEcCceEEEe-----EeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchh
Q 003077 736 MYSVILTVKSVVVSAGLLRIFGREVAELP-----LVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAE 803 (850)
Q Consensus 736 fy~~vl~~~~~~V~aA~lri~g~~~AElp-----~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~ 803 (850)
.|-+|-. ++++||...||-.=++ ..++ --+|+|+.||+||++.++.-..+.++.||++.+.+-+..
T Consensus 70 ~y~~v~~-d~~ivG~i~lRh~Ln~-~ll~~gGHIGY~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~ 140 (174)
T COG3981 70 TYWAVDE-DGQIVGFINLRHQLND-FLLEEGGHIGYSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDK 140 (174)
T ss_pred eEEEEec-CCcEEEEEEeeeecch-HHHhcCCcccceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4555544 8999999999964221 1111 246899999999999999999999999999999887764
No 122
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=88.55 E-value=0.92 Score=42.48 Aligned_cols=48 Identities=23% Similarity=0.240 Sum_probs=41.4
Q ss_pred EeCCEEEEeEEEEEEc--CceEEEeEeEeeccccccChhHHHHHHHHHHH
Q 003077 742 TVKSVVVSAGLLRIFG--REVAELPLVATCREYQGKGCFQALFSCIERLL 789 (850)
Q Consensus 742 ~~~~~~V~aA~lri~g--~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l 789 (850)
|.++...++|.+..-+ .+++-|-.+||.+..||+|+++.|+.+|-+..
T Consensus 14 y~~e~y~~~aIvt~~~~~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d~ 63 (99)
T cd04264 14 YLSEGYNAAAIVTYEGVNNGVPYLDKFAVSSSAQGEGTSDALWRRLRRDF 63 (99)
T ss_pred EEeCCceEEEEEeccCCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 6667788888886544 58999999999999999999999999998764
No 123
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=88.00 E-value=0.42 Score=44.75 Aligned_cols=33 Identities=39% Similarity=0.854 Sum_probs=28.0
Q ss_pred cccccCCCCcCCCCccCCCceeecCC--CCCccCCCcCCCCCC
Q 003077 576 GGCVICRSHDFSAATFDDRTVIYCDQ--CEKEFHVGCLRKNGL 616 (850)
Q Consensus 576 ~~C~iC~~~d~~~~~~d~~~LL~Cdq--C~r~fHv~CL~~~g~ 616 (850)
..|.+|++. .+..++|.. |.++||+.|....+.
T Consensus 56 ~~C~iC~~~--------~G~~i~C~~~~C~~~fH~~CA~~~g~ 90 (110)
T PF13832_consen 56 LKCSICGKS--------GGACIKCSHPGCSTAFHPTCARKAGL 90 (110)
T ss_pred CcCcCCCCC--------CceeEEcCCCCCCcCCCHHHHHHCCC
Confidence 489999974 578999998 999999999876654
No 124
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=87.14 E-value=0.088 Score=40.34 Aligned_cols=33 Identities=33% Similarity=1.116 Sum_probs=17.2
Q ss_pred CceeecCCCCCccCCCcCCCCCCCCccCCCCC-CcEecCCc
Q 003077 594 RTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKD-KWFCCDDC 633 (850)
Q Consensus 594 ~~LL~CdqC~r~fHv~CL~~~g~~~L~evP~g-~WfCc~~C 633 (850)
+.||.|+.|.-..|..|..- ...|.+ .|+| .-|
T Consensus 2 n~ll~C~~C~v~VH~~CYGv------~~~~~~~~W~C-~~C 35 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGV------SEVPDGDDWLC-DRC 35 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-------SS--SS------HHH
T ss_pred CceEEeCCCCCcCChhhCCc------ccCCCCCcEEC-CcC
Confidence 46899999999999999863 333444 6999 444
No 125
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=86.51 E-value=1.8 Score=42.58 Aligned_cols=61 Identities=15% Similarity=0.230 Sum_probs=45.9
Q ss_pred EeEeeccccccChhHHHHHHHHHHHhhCCccEEEecch----hhHHHHHHhccCcEEcCHHHHHh
Q 003077 765 LVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA----EKAESIWTKKFGFRKMSRERLLK 825 (850)
Q Consensus 765 ~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~----~~A~~~w~~kfGF~~i~~~~~~~ 825 (850)
+|.|-...||.|.+|+|..-+-+.+...|..+|++..- ..|...+-..|||..+++.++..
T Consensus 89 RvVVA~~aRGrG~aRalY~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~a~ihg 153 (167)
T COG3818 89 RVVVASRARGRGVARALYADLFSYAELAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQATIHG 153 (167)
T ss_pred EEEEEecccccchHHHHHHHHHHHHHhcCCceEEEEecCCCCChHHHHHhhhcCceEccceEEec
Confidence 33444456899999999999999999999999987543 23444444499999999865443
No 126
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=83.45 E-value=1.1 Score=49.50 Aligned_cols=101 Identities=20% Similarity=0.376 Sum_probs=63.4
Q ss_pred cccccc-CCCceeeeCCCCCccCccccCCCCCCCCCcccccCCCCCCCCccccccccCCccCC-C-------CCcccccc
Q 003077 510 MCHVCG-DGENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQGHSSSMSRSVDLKGGLEAP-G-------AEVGGCVI 580 (850)
Q Consensus 510 ~C~vCg-dgG~Ll~Cd~C~~afH~~Cl~p~~vp~g~W~C~~C~~~~~~ea~dpI~~~r~~~~~-~-------~e~~~C~i 580 (850)
.|-.|. +++....|-.|.-.+|-.-........+++.|--|..+.++-.-++. +....+ . .+...| .
T Consensus 57 sClTC~P~~~~agvC~~C~~~CH~~H~lveL~tKR~FrCDCg~sk~g~~sc~l~---~~~~~~n~~N~YNhNfqG~~C-~ 132 (345)
T KOG2752|consen 57 SCLTCTPAPEMAGVCYACSLSCHDGHELVELYTKRNFRCDCGNSKFGRCSCNLL---EDKDAENSENLYNHNFQGLFC-K 132 (345)
T ss_pred EeecccCChhhceeEEEeeeeecCCceeeeccccCCcccccccccccccccccc---cccccccchhhhhhhhcceeE-E
Confidence 377776 44578888888888887666555566788999888665443221111 111111 1 111223 5
Q ss_pred CCCCcCCCCccCCCceeecCCCCCccC-CCcCCCC
Q 003077 581 CRSHDFSAATFDDRTVIYCDQCEKEFH-VGCLRKN 614 (850)
Q Consensus 581 C~~~d~~~~~~d~~~LL~CdqC~r~fH-v~CL~~~ 614 (850)
|..++.......++.|++|--|+-||| .+|++..
T Consensus 133 Cd~~Ypdp~~~~e~~m~QC~iCEDWFHce~c~~~~ 167 (345)
T KOG2752|consen 133 CDTPYPDPVRTEEGEMLQCVICEDWFHCEGCMQAK 167 (345)
T ss_pred ecCCCCCccccccceeeeEEeccchhcccccCccc
Confidence 666654433445789999999999999 8998754
No 127
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=81.78 E-value=2.7 Score=42.14 Aligned_cols=60 Identities=15% Similarity=0.202 Sum_probs=43.5
Q ss_pred eEEEeEeEeeccccccChhHHHHHHHHHHHhh-CCccEEEecc--h-hhHHHHHHhccCcEEcCH
Q 003077 760 VAELPLVATCREYQGKGCFQALFSCIERLLCS-LNVENLVLPA--A-EKAESIWTKKFGFRKMSR 820 (850)
Q Consensus 760 ~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~-lgv~~LvL~A--~-~~A~~~w~~kfGF~~i~~ 820 (850)
++|+..+--.|..||+|||+..+.++...+.. +++.+...-. + .-.+.++. ||+|..+--
T Consensus 107 ~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFk-k~~f~q~~~ 170 (185)
T KOG4135|consen 107 TGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFK-KFLFTQVFY 170 (185)
T ss_pred eeeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHH-Hhhheeeee
Confidence 56777888889999999999999988888654 4555544433 2 34456777 999976543
No 128
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=81.32 E-value=2.9 Score=39.23 Aligned_cols=48 Identities=21% Similarity=0.159 Sum_probs=38.3
Q ss_pred EeCCEEEEeEEEEEEc-CceEEEeEeEeeccccccChhHHHHHHHHHHH
Q 003077 742 TVKSVVVSAGLLRIFG-REVAELPLVATCREYQGKGCFQALFSCIERLL 789 (850)
Q Consensus 742 ~~~~~~V~aA~lri~g-~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l 789 (850)
|.++..=++|.+..-. .+++-|-.+||.+..||+|+++.|+.+|-+..
T Consensus 15 y~~e~y~~~aivt~~~~~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d~ 63 (99)
T cd04265 15 YLSEGYNAAAIVTNEEVDGVPYLDKFAVSSSAQGEGTGEALWRRLRRDF 63 (99)
T ss_pred EEeCCCcEEEEEeccCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 4455555666665433 47999999999999999999999999998765
No 129
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=81.26 E-value=8.9 Score=37.35 Aligned_cols=84 Identities=15% Similarity=0.170 Sum_probs=58.8
Q ss_pred EEEEEeCCEEEEeEEEE--EE-----cCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHH
Q 003077 738 SVILTVKSVVVSAGLLR--IF-----GREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWT 810 (850)
Q Consensus 738 ~~vl~~~~~~V~aA~lr--i~-----g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~~A~~~w~ 810 (850)
.+++..+|.+||-|.+- ++ +-.++|+=. ..-|||+|+||+..++|-.....+ ..-.+++--.-|..||+
T Consensus 39 ~~~~~~~~~~igf~l~L~~~~~~~~iD~~~~efFI---i~k~~~~GvGR~aaK~If~~~~g~-w~Va~i~EN~PA~~fwK 114 (143)
T COG5628 39 AWLFRIGGLPVGFALVLDLAHSPTPIDRAVAEFFI---VRKHRRRGVGRAAAKAIFGSAWGV-WQVATVRENTPARAFWK 114 (143)
T ss_pred eeEEEECCceeeeeeeecccCCCCcccccchheEe---eehhhccchhHHHHHHHHHHhhce-EEEEEeccCChhHHHHH
Confidence 34456789999988773 22 234555544 458999999999999998877543 45678888899999999
Q ss_pred hccCcEE-cCHHHHHhh
Q 003077 811 KKFGFRK-MSRERLLKY 826 (850)
Q Consensus 811 ~kfGF~~-i~~~~~~~~ 826 (850)
++-+.- +..++.+..
T Consensus 115 -~~~~t~~i~~E~r~d~ 130 (143)
T COG5628 115 -RVAETYPVVEEDRQDA 130 (143)
T ss_pred -hhhcccccchhhhhcc
Confidence 776653 333444444
No 130
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=80.65 E-value=2.6 Score=43.27 Aligned_cols=53 Identities=19% Similarity=0.154 Sum_probs=46.6
Q ss_pred eEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccC
Q 003077 760 VAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFG 814 (850)
Q Consensus 760 ~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~~A~~~w~~kfG 814 (850)
+||+-+.||+++.+|.|+++.+ .++--.|++|||.--+.--.......++ +|+
T Consensus 85 VaElGLygVRpDLEGlGi~hs~-r~m~PvLq~LgVPF~FGtVR~al~~Hv~-R~~ 137 (196)
T PF02474_consen 85 VAELGLYGVRPDLEGLGISHSM-RVMYPVLQELGVPFGFGTVRHALRNHVE-RLC 137 (196)
T ss_pred EEEEEEEEeeccccccccchhh-hhhhhHHHhcCCCeecccchHHHHHHHH-HHh
Confidence 8999999999999999999976 6999999999999988777777777777 776
No 131
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=80.44 E-value=8.6 Score=40.65 Aligned_cols=84 Identities=18% Similarity=0.167 Sum_probs=68.5
Q ss_pred ecceEEEEEEeCCEEEEeEEEEEE---------------------cCceEEEeEeEeec--cccccC----hhHHHHHHH
Q 003077 733 FGGMYSVILTVKSVVVSAGLLRIF---------------------GREVAELPLVATCR--EYQGKG----CFQALFSCI 785 (850)
Q Consensus 733 ~~Gfy~~vl~~~~~~V~aA~lri~---------------------g~~~AElp~vAt~~--~~RgqG----~gr~L~~~i 785 (850)
..-.|.+.+..+|+++|++||-.. ..++.|.-|+|+.+ .-|++| ....||..+
T Consensus 50 ~~t~Yll~~~~~g~I~G~~RlLptt~P~mL~~vF~~Ll~~~~~P~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~ 129 (209)
T COG3916 50 LDTVYLLALTSDGRIVGCVRLLPTTGPYMLTDVFPALLEGGPPPSSPGVWESSRFAVDKPSARRAAGGVSPAAYELFAGM 129 (209)
T ss_pred CCceEEEEEcCCCcEEEEEEeccCCCcchhhhhhHHHhcCCCCCCCCCeEEEeeeeeccccchhhcCCccHHHHHHHHHH
Confidence 345688777889999999998653 25899999999998 666666 467899999
Q ss_pred HHHHhhCCccEEEecchhhHHHHHHhccCcEE
Q 003077 786 ERLLCSLNVENLVLPAAEKAESIWTKKFGFRK 817 (850)
Q Consensus 786 E~~l~~lgv~~LvL~A~~~A~~~w~~kfGF~~ 817 (850)
.+.+...|+.+|+.=+..-.+.+.. +.||..
T Consensus 130 ie~a~~~G~~~IvtVt~~~meril~-r~Gw~~ 160 (209)
T COG3916 130 IEYALARGITGIVTVTDTGMERILR-RAGWPL 160 (209)
T ss_pred HHHHHHcCCceEEEEEchHHHHHHH-HcCCCe
Confidence 9999999999999888877777777 777743
No 132
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=80.41 E-value=4.8 Score=44.78 Aligned_cols=81 Identities=16% Similarity=0.160 Sum_probs=62.8
Q ss_pred EEEE-eCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhh--HHHHHHhccCc
Q 003077 739 VILT-VKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEK--AESIWTKKFGF 815 (850)
Q Consensus 739 ~vl~-~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~~--A~~~w~~kfGF 815 (850)
++++ .+|++||++.+..+++ .+.....++.+++|+.+-+-.|+-.+.+.+.+.|++++-+..... -.--|+.+|||
T Consensus 198 ~~a~~~~g~~va~~l~~~~~~-~~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~G~~~fDfG~s~~~~G~~~FK~~~G~ 276 (330)
T TIGR03019 198 LTVRLGDGVVASAVLSFYFRD-EVLPYYAGGLREARDVAANDLMYWELMRRACERGLRVFDFGRSKRGTGPFKFKKNWGF 276 (330)
T ss_pred EEEEeCCCCEEEEEEEEEeCC-EEEEEeccChHHHHhhChHHHHHHHHHHHHHHCCCcEEEcCCCCCCCccHHHHhcCCC
Confidence 4446 6899999888765544 455568889999999999999999999999999999999987532 22236668899
Q ss_pred EEcCH
Q 003077 816 RKMSR 820 (850)
Q Consensus 816 ~~i~~ 820 (850)
+.+.-
T Consensus 277 ~~~~l 281 (330)
T TIGR03019 277 EPQPL 281 (330)
T ss_pred eeccc
Confidence 87653
No 133
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=78.27 E-value=2.4 Score=46.76 Aligned_cols=65 Identities=22% Similarity=0.363 Sum_probs=40.0
Q ss_pred hhHHhhccCCCCCcEEEEEecC--ceeeEEEEEeCC------eEEecCCCCCCceeechhHHHHhcccc-CCCCCCcc
Q 003077 214 NVKKLLSTGILDGACVKYISTS--RERQLDGIVNGG------GYLCGCPLCNFSKVVSAHEFEQHAGAK-TRHPNNHI 282 (850)
Q Consensus 214 ~~~~ll~tgll~g~~V~Y~~~~--~~~~l~G~i~~~------GilC~C~~C~~~~v~s~s~FE~HAG~~-~~~p~~~I 282 (850)
+...-..+.+++-+|-.+-... +.....|+++.- -|+|-|. -.-+||.+|=.|||.. .-||-.||
T Consensus 210 ~~~~~~~~~~~~~mp~v~t~g~gpng~~i~g~ly~y~~~~~v~i~c~ch----g~~~~~~efv~h~~~~~~~~p~~hi 283 (284)
T PF07897_consen 210 NSGGDGSRNMMEDMPCVSTTGDGPNGKRIEGFLYKYGKGEEVRIVCVCH----GSFLSPAEFVKHAGGGDVANPLRHI 283 (284)
T ss_pred cccccccccccccCCceeeccCCCCCceeeEEEEEecCCCeEEEEEEec----CCCCCHHHHHHhcCCCCcCCchhcc
Confidence 3333344444555553333211 133445554432 3789986 3579999999999987 78898888
No 134
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=76.78 E-value=2.8 Score=47.05 Aligned_cols=50 Identities=14% Similarity=0.207 Sum_probs=43.1
Q ss_pred cccccChhHHHHHHHHHHHhh-CCccEEEecchhhHHHHHHhccCcEEcCHH
Q 003077 771 EYQGKGCFQALFSCIERLLCS-LNVENLVLPAAEKAESIWTKKFGFRKMSRE 821 (850)
Q Consensus 771 ~~RgqG~gr~L~~~iE~~l~~-lgv~~LvL~A~~~A~~~w~~kfGF~~i~~~ 821 (850)
.||+||||..||+..|+.|++ .|-.++-+-+.......|. ||||..-++-
T Consensus 498 KfQHQG~GtLLmeEAERIAr~EHgS~KiavISGVGtR~YY~-klGY~LdGPY 548 (554)
T KOG2535|consen 498 KFQHQGFGTLLMEEAERIAREEHGSGKIAVISGVGTRNYYR-KLGYELDGPY 548 (554)
T ss_pred hhhhcchhhHHHHHHHHHHHHhcCCCceEEEeccchHHHHH-hhCeeecChh
Confidence 699999999999999999985 6777888878888888898 9999987653
No 135
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=74.45 E-value=1.5 Score=36.70 Aligned_cols=30 Identities=30% Similarity=0.974 Sum_probs=26.1
Q ss_pred ccccccccC----CCceeeeCCCCCccCccccCC
Q 003077 508 DDMCHVCGD----GENLLLCNGCPLAFHAACLDP 537 (850)
Q Consensus 508 dd~C~vCgd----gG~Ll~Cd~C~~afH~~Cl~p 537 (850)
...|.+|++ +++++.|..|...||..|...
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 457999983 789999999999999999854
No 136
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=73.90 E-value=1.8 Score=54.72 Aligned_cols=45 Identities=24% Similarity=0.760 Sum_probs=39.0
Q ss_pred cccccCCCCcCCCCccCCCceeecCCCCCccCCCcCCCCCCCCccCCCCCCcEecCCch
Q 003077 576 GGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCN 634 (850)
Q Consensus 576 ~~C~iC~~~d~~~~~~d~~~LL~CdqC~r~fHv~CL~~~g~~~L~evP~g~WfCc~~C~ 634 (850)
+.|.+|.+ .+.+++|..|++.||..|..+ ++.+.|+..|-| ..|.
T Consensus 345 dhcrf~~d---------~~~~lc~Et~prvvhlEcv~h----P~~~~~s~~~e~-evc~ 389 (1414)
T KOG1473|consen 345 DHCRFCHD---------LGDLLCCETCPRVVHLECVFH----PRFAVPSAFWEC-EVCN 389 (1414)
T ss_pred ccccccCc---------ccceeecccCCceEEeeecCC----ccccCCCccchh-hhhh
Confidence 47999984 578999999999999999986 688899999999 6664
No 137
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=70.25 E-value=20 Score=35.27 Aligned_cols=64 Identities=11% Similarity=0.118 Sum_probs=52.3
Q ss_pred ceEEEEEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEe
Q 003077 735 GMYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVL 799 (850)
Q Consensus 735 Gfy~~vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL 799 (850)
|-+-+-.+.+|++||+|.+-+..+.+.-|=.+- +|++...++|...+-.-.++++++|.+.+-|
T Consensus 38 ~t~~~~~~~~~kLiav~v~D~l~~glSaVY~fy-DPd~~~~SlG~~~iL~eI~~a~~~~l~y~YL 101 (128)
T PF04377_consen 38 GTYHLEYRLDGKLIAVAVVDILPDGLSAVYTFY-DPDYSKRSLGTYSILREIELARELGLPYYYL 101 (128)
T ss_pred CCEEEEEEeCCeEEEEEEeecccchhhheeeee-CCCccccCcHHHHHHHHHHHHHHcCCCEEee
Confidence 334444568999999999998877766555554 8999999999999999999999999999884
No 138
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=68.41 E-value=5 Score=47.31 Aligned_cols=48 Identities=27% Similarity=0.540 Sum_probs=39.8
Q ss_pred CCCcccccccccCCCceeeeCCCCCccCccccCCCCCCCCCcccccCCC
Q 003077 504 TGGSDDMCHVCGDGENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQ 552 (850)
Q Consensus 504 ~~~~dd~C~vCgdgG~Ll~Cd~C~~afH~~Cl~p~~vp~g~W~C~~C~~ 552 (850)
...+.+.|.+|.++|.+++|+.|..++|..|... ..+...|.|..|..
T Consensus 85 ~~~~~~~c~vc~~ggs~v~~~s~~~~~~r~c~~~-~~~~c~~~~~d~~~ 132 (463)
T KOG1081|consen 85 PKIEPSECFVCFKGGSLVTCKSRIQAPHRKCKPA-QLEKCSKRCTDCRA 132 (463)
T ss_pred cCCCcchhccccCCCccceeccccccccccCcCc-cCcccccCCcceee
Confidence 3456789999999999999999999999999865 35677788888764
No 139
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=67.80 E-value=2.3 Score=38.22 Aligned_cols=33 Identities=39% Similarity=0.878 Sum_probs=26.9
Q ss_pred cccccCCCCcCCCCccCCCceeecC--CCCCccCCCcCCCCCC
Q 003077 576 GGCVICRSHDFSAATFDDRTVIYCD--QCEKEFHVGCLRKNGL 616 (850)
Q Consensus 576 ~~C~iC~~~d~~~~~~d~~~LL~Cd--qC~r~fHv~CL~~~g~ 616 (850)
..|.+|++. .+..+.|. .|.+.||+.|....+.
T Consensus 37 ~~C~~C~~~--------~Ga~i~C~~~~C~~~fH~~CA~~~~~ 71 (90)
T PF13771_consen 37 LKCSICKKK--------GGACIGCSHPGCSRSFHVPCARKAGC 71 (90)
T ss_pred CCCcCCCCC--------CCeEEEEeCCCCCcEEChHHHccCCe
Confidence 379999964 36889998 5999999999886554
No 140
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=66.40 E-value=4.7 Score=35.63 Aligned_cols=27 Identities=11% Similarity=0.091 Sum_probs=23.8
Q ss_pred EEeEeEeeccccccChhHHHHHHHHHH
Q 003077 762 ELPLVATCREYQGKGCFQALFSCIERL 788 (850)
Q Consensus 762 Elp~vAt~~~~RgqG~gr~L~~~iE~~ 788 (850)
=|.+|=|.+.+|++|++++||+++-+.
T Consensus 7 GI~RIWV~~~~RR~GIAt~Lld~ar~~ 33 (70)
T PF13880_consen 7 GISRIWVSPSHRRKGIATRLLDAAREN 33 (70)
T ss_pred EeEEEEeChhhhhhhHHHHHHHHHHHh
Confidence 377888999999999999999998765
No 141
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=63.34 E-value=4.2 Score=34.17 Aligned_cols=37 Identities=27% Similarity=0.739 Sum_probs=29.5
Q ss_pred cccccCCCCcCCCCccCCCceeecCCCCCccCCCcCCCCCCC
Q 003077 576 GGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLC 617 (850)
Q Consensus 576 ~~C~iC~~~d~~~~~~d~~~LL~CdqC~r~fHv~CL~~~g~~ 617 (850)
..|.+|++.- ++++.+++|..|..-||-.|....+..
T Consensus 6 ~~C~~Cg~~~-----~~~dDiVvCp~CgapyHR~C~~~~g~C 42 (54)
T PF14446_consen 6 CKCPVCGKKF-----KDGDDIVVCPECGAPYHRDCWEKAGGC 42 (54)
T ss_pred ccChhhCCcc-----cCCCCEEECCCCCCcccHHHHhhCCce
Confidence 3799999752 247889999999999999998765543
No 142
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=63.11 E-value=29 Score=36.33 Aligned_cols=33 Identities=24% Similarity=0.159 Sum_probs=26.1
Q ss_pred EEEeEeEeeccccccChhHHHHHHHHHHHhhCC
Q 003077 761 AELPLVATCREYQGKGCFQALFSCIERLLCSLN 793 (850)
Q Consensus 761 AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lg 793 (850)
--|--|-|.|.||++|||+.|++.-=.+++.-|
T Consensus 81 ~NLsCIl~lP~yQrkGyG~~LI~fSY~LSr~e~ 113 (188)
T PF01853_consen 81 NNLSCILTLPPYQRKGYGRFLIDFSYELSRREG 113 (188)
T ss_dssp EEESEEEE-GGGTTSSHHHHHHHHHHHHHHHTT
T ss_pred eeEeehhhcchhhhcchhhhhhhhHHHHhhccC
Confidence 467778999999999999999998766666544
No 143
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=62.40 E-value=9.7 Score=44.38 Aligned_cols=64 Identities=23% Similarity=0.507 Sum_probs=39.4
Q ss_pred ccccCCCCcCCCCccCCCceeecCCCCCccCCCcCCCCCCCC----ccC---CCCCCcEecCCchhH---HHHHhhhh
Q 003077 577 GCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCD----LKE---IPKDKWFCCDDCNRI---HAALQDFV 644 (850)
Q Consensus 577 ~C~iC~~~d~~~~~~d~~~LL~CdqC~r~fHv~CL~~~g~~~----L~e---vP~g~WfCc~~C~~i---~~~LqkLv 644 (850)
.|.+|.+.|++. ++-.-|.||.|.-|.|..|.-..++.- ... ..+.. |+|.-|... .+-+.+.+
T Consensus 130 ~C~iC~kfD~~~---n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~-f~C~~C~~~seLlG~vk~vf 203 (446)
T PF07227_consen 130 MCCICSKFDDNK---NTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQ-FHCRACGKTSELLGFVKKVF 203 (446)
T ss_pred CccccCCcccCC---CCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceE-EEccCCCChhhHHHHHHHHH
Confidence 899999876433 445678999999999999954333211 111 11223 445888654 44444444
No 144
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=61.58 E-value=5.3 Score=44.14 Aligned_cols=32 Identities=44% Similarity=0.771 Sum_probs=29.6
Q ss_pred ceecCCCCCccCccccccccCCcccCCCCcee
Q 003077 450 GIVCDCCNKEISPSQFEAHAGMAARRQPYRHI 481 (850)
Q Consensus 450 gI~C~cC~~~~Sps~FE~hAG~~~rr~Py~~I 481 (850)
.|+|.|=+.-+||.+|-.|||...--+|.+||
T Consensus 252 ~i~c~chg~~~~~~efv~h~~~~~~~~p~~hi 283 (284)
T PF07897_consen 252 RIVCVCHGSFLSPAEFVKHAGGGDVANPLRHI 283 (284)
T ss_pred EEEEEecCCCCCHHHHHHhcCCCCcCCchhcc
Confidence 58999999999999999999998888998887
No 145
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=61.02 E-value=31 Score=35.27 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=43.5
Q ss_pred CCEEEE-----eEEEEEEcC--ceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEE
Q 003077 744 KSVVVS-----AGLLRIFGR--EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLV 798 (850)
Q Consensus 744 ~~~~V~-----aA~lri~g~--~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~Lv 798 (850)
++++|| .+.+||.+. .++||=++.+++..|.+++.=.|+.+|=+.+...||-.-+
T Consensus 87 ~~kLvgfIsaip~~irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~~gI~qAv 148 (162)
T PF01233_consen 87 SKKLVGFISAIPATIRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNLQGIWQAV 148 (162)
T ss_dssp TTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--EEE
T ss_pred CCEEEEEEccceEEEEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhhcCceeee
Confidence 456665 356777665 6899999999999999999999999999999988886544
No 146
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=60.10 E-value=3.6 Score=37.62 Aligned_cols=45 Identities=33% Similarity=0.708 Sum_probs=27.6
Q ss_pred cccccccccC-----------CC---ceeeeCCCCCccCccccCCC-CCCCCCcccccCCC
Q 003077 507 SDDMCHVCGD-----------GE---NLLLCNGCPLAFHAACLDPL-LIPESGWRCPNCRQ 552 (850)
Q Consensus 507 ~dd~C~vCgd-----------gG---~Ll~Cd~C~~afH~~Cl~p~-~vp~g~W~C~~C~~ 552 (850)
+|+.|.||.. +| .++. ..|...||..|+..- ......=.||.|+.
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~-g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~ 79 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVW-GKCSHNFHMHCILKWLSTQSSKGQCPMCRQ 79 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceee-ccCccHHHHHHHHHHHccccCCCCCCCcCC
Confidence 3677777752 22 3443 349999999998742 11123447888864
No 147
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=59.70 E-value=17 Score=33.54 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=21.3
Q ss_pred CceEEEeEeEeeccccccChhHHHH
Q 003077 758 REVAELPLVATCREYQGKGCFQALF 782 (850)
Q Consensus 758 ~~~AElp~vAt~~~~RgqG~gr~L~ 782 (850)
..++||-++||.++||+...-..|.
T Consensus 76 ~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 76 RRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred CcEEEeehheECHhHCCChHHHHHh
Confidence 3689999999999999998776664
No 148
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=58.47 E-value=12 Score=43.38 Aligned_cols=36 Identities=19% Similarity=0.537 Sum_probs=23.2
Q ss_pred ccccCCCCcCCCCccCCCceeecCCCCCccCCCcCCCC
Q 003077 577 GCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKN 614 (850)
Q Consensus 577 ~C~iC~~~d~~~~~~d~~~LL~CdqC~r~fHv~CL~~~ 614 (850)
.|.+|+++-.-..+.++- ++--.=+|-||++|.+..
T Consensus 396 rCs~C~~PI~P~~G~~et--vRvvamdr~fHv~CY~CE 431 (468)
T KOG1701|consen 396 RCSVCGNPILPRDGKDET--VRVVAMDRDFHVNCYKCE 431 (468)
T ss_pred chhhccCCccCCCCCcce--EEEEEccccccccceehh
Confidence 699999875444443332 333344789999998753
No 149
>PRK00756 acyltransferase NodA; Provisional
Probab=58.17 E-value=17 Score=37.35 Aligned_cols=61 Identities=30% Similarity=0.329 Sum_probs=45.2
Q ss_pred EEEEEeC-CEEEEeEEEEEE---cC---ceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEe
Q 003077 738 SVILTVK-SVVVSAGLLRIF---GR---EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVL 799 (850)
Q Consensus 738 ~~vl~~~-~~~V~aA~lri~---g~---~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL 799 (850)
-++.|+. |...-.+.||-| |+ =+||+-+.||+++..|+|+++.+ .++--.|++|||..-+-
T Consensus 56 RaIgyD~~GVaAH~G~LRRFIkVg~vDlLVaElGLygVRpDLEGlGi~~S~-r~m~PvLq~LgVPF~FG 123 (196)
T PRK00756 56 RAIAYDSHGVAAHMGLLRRFIKVGEVDLLVAELGLYGVRPDLEGLGIAHSI-RAMYPVLQELGVPFAFG 123 (196)
T ss_pred EEEeecCccHhHhHHHHhhhheecccceeEEEeeeeeeccccccccchhhH-HHHHHHHHhcCCCeecc
Confidence 3455653 333334555443 22 38999999999999999999876 68999999999997663
No 150
>PRK14852 hypothetical protein; Provisional
Probab=57.18 E-value=29 Score=44.57 Aligned_cols=65 Identities=18% Similarity=0.223 Sum_probs=54.7
Q ss_pred cCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEEcCHH
Q 003077 757 GREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRKMSRE 821 (850)
Q Consensus 757 g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~~A~~~w~~kfGF~~i~~~ 821 (850)
|..++|+-++|++++.|.+=+--.|+..+-..+...++..+++---+.=..||++-|||+.+++.
T Consensus 118 Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~~dd~~i~VnPkH~~FY~r~l~f~~ig~~ 182 (989)
T PRK14852 118 GRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSEVDDILVTVNPKHVKFYTDIFLFKPFGEV 182 (989)
T ss_pred CCeEEeeehheechhhcccchhHHHHHHHHHHHHHcCCCeEEEEECcchHHHHHHHhCCcccccc
Confidence 45799999999988777765555777777666777899999999999999999999999999863
No 151
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=57.07 E-value=53 Score=35.69 Aligned_cols=58 Identities=7% Similarity=-0.005 Sum_probs=48.3
Q ss_pred EEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEe
Q 003077 741 LTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVL 799 (850)
Q Consensus 741 l~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL 799 (850)
.+.+|++||+|.+-+..+.+--|=.+- +|++-..++|...+-.-.++++++|.+.+-|
T Consensus 149 y~~~g~LiaVav~D~l~d~lSAVY~Fy-DPd~~~~SLG~~~iL~qI~~ak~~gl~y~YL 206 (240)
T PRK01305 149 FRGDGKLVAVAVTDVLDDGLSAVYTFY-DPDEEHRSLGTFAILWQIELAKRLGLPYVYL 206 (240)
T ss_pred EEeCCeEEEEEEEeccCCceeeEEEee-CCCccccCCHHHHHHHHHHHHHHcCCCeEee
Confidence 347999999999998888876664443 8899888899888888889999999998874
No 152
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=52.69 E-value=2.7 Score=34.31 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=22.8
Q ss_pred cchhhhhhhhccccchhhhhhhHhHHHHHHh
Q 003077 674 MNDVQWQMLKKAQCFEEKEKSLLSSATAIFR 704 (850)
Q Consensus 674 ~~~vkWqlLs~~~~swe~~~~lLa~Al~If~ 704 (850)
+|+|+|+.+++.+++|++...+...+-.++.
T Consensus 20 ~ylVkW~g~~~~~~tWe~~~~l~~~~~~li~ 50 (55)
T PF00385_consen 20 EYLVKWKGYPYSENTWEPEENLKNCFPELIE 50 (55)
T ss_dssp EEEEEETTSSGGGEEEEEGGGCSSHCHHHHH
T ss_pred EEEEEECCCCCCCCeEeeHHHHhHhhHHHHH
Confidence 7999999999999999965544444344343
No 153
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=52.68 E-value=8.8 Score=39.30 Aligned_cols=59 Identities=20% Similarity=0.574 Sum_probs=37.0
Q ss_pred ccccCCCCcCCCCccCCCceeecCCCCCccCCCcCCCCCCCC--ccCCCCCCc--EecCCchhHHHH
Q 003077 577 GCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCD--LKEIPKDKW--FCCDDCNRIHAA 639 (850)
Q Consensus 577 ~C~iC~~~d~~~~~~d~~~LL~CdqC~r~fHv~CL~~~g~~~--L~evP~g~W--fCc~~C~~i~~~ 639 (850)
.|..|+..+. ...-+.|+.|..|--+||..||.+...-. ...+..+.+ .| +.|..++.+
T Consensus 1 ~C~~C~~~g~---~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQC-r~Cig~~~k 63 (175)
T PF15446_consen 1 TCDTCGYEGD---DRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQC-RRCIGIAHK 63 (175)
T ss_pred CcccccCCCC---CccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEec-hhhcChhhc
Confidence 3677764331 23467999999999999999997653211 223333443 34 677666543
No 154
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=52.56 E-value=30 Score=38.40 Aligned_cols=32 Identities=28% Similarity=0.187 Sum_probs=26.3
Q ss_pred EEeEeEeeccccccChhHHHHHHHHHHHhhCC
Q 003077 762 ELPLVATCREYQGKGCFQALFSCIERLLCSLN 793 (850)
Q Consensus 762 Elp~vAt~~~~RgqG~gr~L~~~iE~~l~~lg 793 (850)
-|--|-|.|.||++|||+.||+.-=++.+.-|
T Consensus 157 NLaCIltLPpyQrkGyG~~LI~fSYeLSr~Eg 188 (290)
T PLN03238 157 NLACILTLPPYQRKGYGKFLISFAYELSKREG 188 (290)
T ss_pred cEEEEEecChhhhccHhHhHHHHHhHHhhccC
Confidence 37778999999999999999987766665554
No 155
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=46.83 E-value=19 Score=32.24 Aligned_cols=30 Identities=23% Similarity=0.663 Sum_probs=26.4
Q ss_pred ccccccccCC-CceeeeCC--CCCccCccccCC
Q 003077 508 DDMCHVCGDG-ENLLLCNG--CPLAFHAACLDP 537 (850)
Q Consensus 508 dd~C~vCgdg-G~Ll~Cd~--C~~afH~~Cl~p 537 (850)
...|.+|+.. |..+-|.. |.+.||..|.--
T Consensus 36 ~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 36 KLKCSICKKKGGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred CCCCcCCCCCCCeEEEEeCCCCCcEEChHHHcc
Confidence 3689999988 99999976 999999999865
No 156
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=44.58 E-value=20 Score=41.43 Aligned_cols=25 Identities=28% Similarity=0.252 Sum_probs=21.3
Q ss_pred EeEeEeeccccccChhHHHHHHHHH
Q 003077 763 LPLVATCREYQGKGCFQALFSCIER 787 (850)
Q Consensus 763 lp~vAt~~~~RgqG~gr~L~~~iE~ 787 (850)
|--|-|.|.||++|||+.|++.==+
T Consensus 263 laCILtLPpyQRkGYGklLIdFSYe 287 (396)
T KOG2747|consen 263 LACILTLPPYQRKGYGKLLIDFSYE 287 (396)
T ss_pred eeeeeecChhhhcccchhhhhhhhh
Confidence 7788999999999999999875433
No 157
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=44.46 E-value=7.1 Score=47.07 Aligned_cols=51 Identities=29% Similarity=0.706 Sum_probs=34.1
Q ss_pred ccccCCCCcCCCCccCCCceeecCCCCCccCCCcCCCCCCCCccCCCCCCcEecCCchhHHHHH
Q 003077 577 GCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNRIHAAL 640 (850)
Q Consensus 577 ~C~iC~~~d~~~~~~d~~~LL~CdqC~r~fHv~CL~~~g~~~L~evP~g~WfCc~~C~~i~~~L 640 (850)
.|.+|... .-.-.|..++...|+.|..+||..|+.... -||+.|.++..+-
T Consensus 513 iCe~Cq~~-~iiyPF~~~~~~rC~~C~avfH~~C~~r~s------------~~CPrC~R~q~r~ 563 (580)
T KOG1829|consen 513 ICELCQHN-DIIYPFETRNTRRCSTCLAVFHKKCLRRKS------------PCCPRCERRQKRA 563 (580)
T ss_pred eeeeccCC-CcccccccccceeHHHHHHHHHHHHHhccC------------CCCCchHHHHHHh
Confidence 45555222 123455677889999999999999997522 1358898876543
No 158
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.71 E-value=16 Score=41.57 Aligned_cols=43 Identities=33% Similarity=0.771 Sum_probs=30.9
Q ss_pred cccccccCC---CceeeeCCCCCccCccccCCCCCCCCCcccccCCC
Q 003077 509 DMCHVCGDG---ENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQ 552 (850)
Q Consensus 509 d~C~vCgdg---G~Ll~Cd~C~~afH~~Cl~p~~vp~g~W~C~~C~~ 552 (850)
+.|.||-+. |+.+.=--|...||..|+++..... .=+||.|+.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~-r~~CPvCK~ 275 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT-RTFCPVCKR 275 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc-CccCCCCCC
Confidence 599999853 5555556799999999999854332 335888864
No 159
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=41.93 E-value=23 Score=43.53 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=25.1
Q ss_pred EEEeEeEeeccccccChhHHHHHHHHHHH
Q 003077 761 AELPLVATCREYQGKGCFQALFSCIERLL 789 (850)
Q Consensus 761 AElp~vAt~~~~RgqG~gr~L~~~iE~~l 789 (850)
|.|-||||.|+|++-|||.+-++-|.+..
T Consensus 615 aRIVRIAvhP~y~~MGYGsrAvqLL~~y~ 643 (1011)
T KOG2036|consen 615 ARIVRIAVHPEYQKMGYGSRAVQLLTDYF 643 (1011)
T ss_pred ceEEEEEeccchhccCccHHHHHHHHHHH
Confidence 56789999999999999998888777764
No 160
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=40.90 E-value=42 Score=38.29 Aligned_cols=79 Identities=16% Similarity=0.301 Sum_probs=59.4
Q ss_pred ceEEEEEEeC--CEEEE-----eEEEEEEcC--ceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCcc------EEEe
Q 003077 735 GMYSVILTVK--SVVVS-----AGLLRIFGR--EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVE------NLVL 799 (850)
Q Consensus 735 Gfy~~vl~~~--~~~V~-----aA~lri~g~--~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~------~LvL 799 (850)
--|++.+.+. .++|| .++|||.|. ..+||-+++|++..|++++.=.|+.+|-+...--||- -++|
T Consensus 133 ~~WHiGVRv~~s~kLVaFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvnl~gIfqA~yTaGvvL 212 (421)
T KOG2779|consen 133 KEWHIGVRVKSSKKLVAFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVNLEGIFQAAYTAGVVL 212 (421)
T ss_pred cceEEEEEEecCCceEEEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhhhhhhhhHhhhcceee
Confidence 3455555543 35655 467888886 6899999999999999999999999998877666654 3677
Q ss_pred cchhhHHHHHHhcc
Q 003077 800 PAAEKAESIWTKKF 813 (850)
Q Consensus 800 ~A~~~A~~~w~~kf 813 (850)
|+-...-.-|-+.|
T Consensus 213 p~PVstcRY~HRsL 226 (421)
T KOG2779|consen 213 PKPVSTCRYWHRSL 226 (421)
T ss_pred ccccchhhhhhccC
Confidence 77777777777644
No 161
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=40.35 E-value=13 Score=34.74 Aligned_cols=31 Identities=32% Similarity=0.831 Sum_probs=26.7
Q ss_pred cccccccccC-CCceeeeCC--CCCccCccccCC
Q 003077 507 SDDMCHVCGD-GENLLLCNG--CPLAFHAACLDP 537 (850)
Q Consensus 507 ~dd~C~vCgd-gG~Ll~Cd~--C~~afH~~Cl~p 537 (850)
....|.+|+. .|..+-|.. |..+||..|...
T Consensus 54 ~~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 54 FKLKCSICGKSGGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred cCCcCcCCCCCCceeEEcCCCCCCcCCCHHHHHH
Confidence 3568999997 588999988 999999999864
No 162
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=40.26 E-value=30 Score=40.63 Aligned_cols=31 Identities=26% Similarity=0.166 Sum_probs=24.3
Q ss_pred EEeEeEeeccccccChhHHHHHHHHHHHhhC
Q 003077 762 ELPLVATCREYQGKGCFQALFSCIERLLCSL 792 (850)
Q Consensus 762 Elp~vAt~~~~RgqG~gr~L~~~iE~~l~~l 792 (850)
-|--|-|.|.||++|||+.||+.-=++.+.-
T Consensus 308 NLaCIltlP~yQrkGyG~~LI~~SYeLSr~e 338 (450)
T PLN00104 308 NLACILTLPPYQRKGYGKFLIAFSYELSKRE 338 (450)
T ss_pred ceEEEEecchhhhcchhheehhheehhhhcc
Confidence 4778899999999999999998655544433
No 163
>PLN03239 histone acetyltransferase; Provisional
Probab=39.85 E-value=55 Score=37.35 Aligned_cols=32 Identities=22% Similarity=0.082 Sum_probs=25.8
Q ss_pred EEeEeEeeccccccChhHHHHHHHHHHHhhCC
Q 003077 762 ELPLVATCREYQGKGCFQALFSCIERLLCSLN 793 (850)
Q Consensus 762 Elp~vAt~~~~RgqG~gr~L~~~iE~~l~~lg 793 (850)
-|--|-|.|.||++|||+.||+.-=++.+.-|
T Consensus 215 NLaCIltLPpyQrkGyG~lLI~fSYeLSr~Eg 246 (351)
T PLN03239 215 NLACILTFPAHQRKGYGRFLIAFSYELSKKEE 246 (351)
T ss_pred ceEEEEecChhhhcchhhhhHhhhhHhhhhcC
Confidence 37788999999999999999987666655444
No 164
>PTZ00064 histone acetyltransferase; Provisional
Probab=39.77 E-value=45 Score=39.68 Aligned_cols=32 Identities=25% Similarity=0.169 Sum_probs=26.2
Q ss_pred EEeEeEeeccccccChhHHHHHHHHHHHhhCC
Q 003077 762 ELPLVATCREYQGKGCFQALFSCIERLLCSLN 793 (850)
Q Consensus 762 Elp~vAt~~~~RgqG~gr~L~~~iE~~l~~lg 793 (850)
-|--|-|.|.||++|||+.||+.==++.+.-|
T Consensus 386 NLACILtLPpyQRKGYGklLIdfSYeLSrrEg 417 (552)
T PTZ00064 386 NLACILTLPCYQRKGYGKLLVDLSYKLSLKEG 417 (552)
T ss_pred ceEEEEecchhhhcchhhhhhhhhhhhhhhcC
Confidence 47788999999999999999987766655544
No 165
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=39.57 E-value=3.4 Score=32.35 Aligned_cols=40 Identities=33% Similarity=0.794 Sum_probs=24.4
Q ss_pred cccccccCC----CceeeeCCCCCccCccccCCCCCCCCCcccccCC
Q 003077 509 DMCHVCGDG----ENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCR 551 (850)
Q Consensus 509 d~C~vCgdg----G~Ll~Cd~C~~afH~~Cl~p~~vp~g~W~C~~C~ 551 (850)
|.|.+|.+. ..++... |...||..|+..... ....||.|+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~--~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLK--RNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHH--HSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHH--hCCcCCccC
Confidence 568888743 3444444 999999999875211 123777773
No 166
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=39.34 E-value=55 Score=37.27 Aligned_cols=50 Identities=18% Similarity=0.151 Sum_probs=39.2
Q ss_pred cceEEEEEEe--CCEEEEeEEEEEE-c-----------------------------------CceEEEeEeEeecccccc
Q 003077 734 GGMYSVILTV--KSVVVSAGLLRIF-G-----------------------------------REVAELPLVATCREYQGK 775 (850)
Q Consensus 734 ~Gfy~~vl~~--~~~~V~aA~lri~-g-----------------------------------~~~AElp~vAt~~~~Rgq 775 (850)
..-|.+||++ .|+|||++.|..- | ++..||--+-++++||+-
T Consensus 53 ~~~YlFVLEDt~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~SElctLfL~p~~R~~ 132 (336)
T TIGR03244 53 EQGYLFVLEDTETGTVAGVSAIEAAVGLEEPFYNYRVGTVVHASKELGIYKALETLFLSNDLTGYSELCTLFLDPDYRKG 132 (336)
T ss_pred CccEEEEEEeCCCCeEEEEEeEEecccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCeeeEEEEECHHHcCC
Confidence 3578999985 6899999887652 1 456788888899999999
Q ss_pred ChhHHHHH
Q 003077 776 GCFQALFS 783 (850)
Q Consensus 776 G~gr~L~~ 783 (850)
|.|+.|-.
T Consensus 133 ~~G~LLSr 140 (336)
T TIGR03244 133 GNGRLLSK 140 (336)
T ss_pred cchhhHHH
Confidence 99977644
No 167
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=37.99 E-value=42 Score=38.28 Aligned_cols=84 Identities=14% Similarity=0.152 Sum_probs=48.6
Q ss_pred ceEEEEEEe--CCEEEEeEEEEEE------------------------------------cCceEEEeEeEeeccccccC
Q 003077 735 GMYSVILTV--KSVVVSAGLLRIF------------------------------------GREVAELPLVATCREYQGKG 776 (850)
Q Consensus 735 Gfy~~vl~~--~~~~V~aA~lri~------------------------------------g~~~AElp~vAt~~~~RgqG 776 (850)
-.|.+||++ .|+||||+.|..- -++..||--+-++++||+-|
T Consensus 58 ~~YlfVLED~~tg~vvGts~I~a~vG~~~PfY~yr~~~~vh~S~~L~v~~~~~~L~L~~d~tG~sEl~tLfL~p~~R~~~ 137 (342)
T PF04958_consen 58 EGYLFVLEDTETGEVVGTSAIEAAVGLDEPFYSYRVSTLVHASRELGVRNRHETLTLSNDYTGCSELCTLFLDPDYRGGG 137 (342)
T ss_dssp -EEEEEEEETTT--EEEEEEEESSTTSSS---EEEEEEEEEEETTTTEEEEEEEEEEE-TTTTSEEEEEEEE-GGGTTSH
T ss_pred cceEEEEEecCCCcEEEEEeEEeccCCCCCcEEEEcCceeEcCcccCCccceeeEeeecCCCCCeeeEEEEECHHHcCCc
Confidence 359999995 6999999987531 14578888899999999999
Q ss_pred hhHHHHHHHHHHH---hhCCccEEEecch-----hhHHHHHHhccCcEEcC
Q 003077 777 CFQALFSCIERLL---CSLNVENLVLPAA-----EKAESIWTKKFGFRKMS 819 (850)
Q Consensus 777 ~gr~L~~~iE~~l---~~lgv~~LvL~A~-----~~A~~~w~~kfGF~~i~ 819 (850)
.|+.|-.+=-=.. ++.=-++++..=. ..--+||. .+|-+-.+
T Consensus 138 ~G~lLSr~RfLFiA~~~~rF~~~viAElrG~~De~G~SPFWd-alG~~FF~ 187 (342)
T PF04958_consen 138 NGRLLSRSRFLFIAQHRERFADRVIAELRGVSDEDGRSPFWD-ALGRHFFD 187 (342)
T ss_dssp HHHHHHHHHHHHHHH-GGGS-SEEEEE--B---TT---HHHH-HTGGGTS-
T ss_pred hHHHHHHHHHHHHHhChhhcchheeeeccCCcCCCCCCchHH-HhhccccC
Confidence 9988755422221 1111233332211 24469999 88754433
No 168
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=37.78 E-value=69 Score=30.39 Aligned_cols=69 Identities=25% Similarity=0.524 Sum_probs=46.0
Q ss_pred ccccccceeecCCCCCCCCeeEEEe----CCEE----------eeeeE-EeCCceecCCCCCccCccccc-cccCCcccC
Q 003077 412 RDNDLHRLLFLPNGLPDGERLTYIV----KGQR----------LRFGC-KQGNGIVCDCCNKEISPSQFE-AHAGMAARR 475 (850)
Q Consensus 412 rd~~lhkllf~~~gL~~g~~v~Y~~----kGq~----------~l~G~-~qg~gI~C~cC~~~~Sps~FE-~hAG~~~rr 475 (850)
.|..||+--+. .+|++|.+.+ .|.. --.|| ++|+.+.|.-|+..|+..... ..+| +
T Consensus 3 ~Dgklh~y~y~----~~G~~vrff~i~~~dg~~~va~daCeiC~~~GY~q~g~~lvC~~C~~~~~~~~ig~~~GG----C 74 (102)
T PF10080_consen 3 KDGKLHRYAYT----DDGKEVRFFAIKKPDGSYRVAFDACEICGPKGYYQEGDQLVCKNCGVRFNLPTIGGKSGG----C 74 (102)
T ss_pred cCCcEEEEEEc----CCCEEEEEEEEECCCCCEEEEEEeccccCCCceEEECCEEEEecCCCEEehhhcccccCC----C
Confidence 57788888874 3566777754 2321 12344 578889999999999988888 5555 5
Q ss_pred CCCceeEccCCcc
Q 003077 476 QPYRHIYTSNGMT 488 (850)
Q Consensus 476 ~Py~~I~~~~G~s 488 (850)
||+.--++-+|-.
T Consensus 75 NP~P~~~~~~~~~ 87 (102)
T PF10080_consen 75 NPIPLPYTVDGGN 87 (102)
T ss_pred CccCCceEecCCe
Confidence 6766656555443
No 169
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=36.86 E-value=27 Score=36.67 Aligned_cols=36 Identities=39% Similarity=0.808 Sum_probs=28.0
Q ss_pred ccccCCCCcCCCCccCCCceeecCCCCCccCCCcCCC
Q 003077 577 GCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRK 613 (850)
Q Consensus 577 ~C~iC~~~d~~~~~~d~~~LL~CdqC~r~fHv~CL~~ 613 (850)
.|.+|...+ -.-+|+..+..+|..|...||..|...
T Consensus 154 iCe~C~~~~-~IfPF~~~~~~~C~~C~~v~H~~C~~~ 189 (202)
T PF13901_consen 154 ICEICNSDD-IIFPFQIDTTVRCPKCKSVFHKSCFRK 189 (202)
T ss_pred CCccCCCCC-CCCCCCCCCeeeCCcCccccchhhcCC
Confidence 677777542 234566778999999999999999973
No 170
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=36.64 E-value=89 Score=32.49 Aligned_cols=55 Identities=20% Similarity=0.413 Sum_probs=46.6
Q ss_pred ceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEEc
Q 003077 759 EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRKM 818 (850)
Q Consensus 759 ~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~~A~~~w~~kfGF~~i 818 (850)
.++||-=+|. .+.|.++.|+..|-..|...|++-++.-|......+.. ++|....
T Consensus 86 ~IvEvGnLAs----~~~g~~~~l~~~l~~~L~~~g~~w~vfTaT~~lr~~~~-rlgl~~~ 140 (179)
T PF12261_consen 86 QIVEVGNLAS----FSPGAARLLFAALAQLLAQQGFEWVVFTATRQLRNLFR-RLGLPPT 140 (179)
T ss_pred heeEeechhh----cCcccHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHH-HcCCCce
Confidence 3566655553 36899999999999999999999999999999999999 9987654
No 171
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=36.10 E-value=60 Score=36.93 Aligned_cols=50 Identities=10% Similarity=0.008 Sum_probs=39.4
Q ss_pred cceEEEEEEe--CCEEEEeEEEEEE-c-----------------------------------CceEEEeEeEeecccccc
Q 003077 734 GGMYSVILTV--KSVVVSAGLLRIF-G-----------------------------------REVAELPLVATCREYQGK 775 (850)
Q Consensus 734 ~Gfy~~vl~~--~~~~V~aA~lri~-g-----------------------------------~~~AElp~vAt~~~~Rgq 775 (850)
..-|.+||++ .|+|||++.|..- | ++..||--+-++++||+-
T Consensus 54 ~~~YlFVLEDt~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~ 133 (336)
T TIGR03245 54 EERYLFVLEDTETGKLLGTSSIVASAGYGEPFYSYRNDTLIHASRELKVNNKIHVLYMCHELTGSSLLCSFYVDPRLRKT 133 (336)
T ss_pred CccEEEEEEeCCCCcEEEEEeEEecccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCC
Confidence 4578999994 6899999987652 1 456788888899999999
Q ss_pred ChhHHHHH
Q 003077 776 GCFQALFS 783 (850)
Q Consensus 776 G~gr~L~~ 783 (850)
|.|+.|-.
T Consensus 134 ~~G~lLSr 141 (336)
T TIGR03245 134 EAAELLSR 141 (336)
T ss_pred CchhHHHH
Confidence 99977644
No 172
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=35.88 E-value=19 Score=31.48 Aligned_cols=33 Identities=33% Similarity=0.704 Sum_probs=12.4
Q ss_pred ccccCCCCcCCCCccCCCceeecC--CCCCccCCCcCC
Q 003077 577 GCVICRSHDFSAATFDDRTVIYCD--QCEKEFHVGCLR 612 (850)
Q Consensus 577 ~C~iC~~~d~~~~~~d~~~LL~Cd--qC~r~fHv~CL~ 612 (850)
.|.||...-. ..+....+.|+ +|.+.||..||.
T Consensus 4 ~C~IC~~~~~---~~~~~p~~~C~n~~C~~~fH~~CL~ 38 (70)
T PF11793_consen 4 ECGICYSYRL---DDGEIPDVVCPNPSCGKKFHLLCLS 38 (70)
T ss_dssp S-SSS--SS----TT-----B--S-TT----B-SGGGH
T ss_pred CCCcCCcEec---CCCCcCceEcCCcccCCHHHHHHHH
Confidence 6888876421 11234568998 999999999985
No 173
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=35.82 E-value=63 Score=36.78 Aligned_cols=50 Identities=18% Similarity=0.151 Sum_probs=39.6
Q ss_pred cceEEEEEEe--CCEEEEeEEEEEE-c-----------------------------------CceEEEeEeEeecccccc
Q 003077 734 GGMYSVILTV--KSVVVSAGLLRIF-G-----------------------------------REVAELPLVATCREYQGK 775 (850)
Q Consensus 734 ~Gfy~~vl~~--~~~~V~aA~lri~-g-----------------------------------~~~AElp~vAt~~~~Rgq 775 (850)
...|.+||++ .|+|||++.|..- | ++..||--+-++++||+-
T Consensus 53 ~~~YlFVLED~~tg~vvGts~I~a~vG~~~PfY~yrv~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~ 132 (335)
T TIGR03243 53 EEGYLFVLEDTETGTVAGVSAIEAAVGLDEPFYNYRVGTLVHASRELGVYNKIPTLTLSNDLTGSSELCTLFLDPDYRKG 132 (335)
T ss_pred CccEEEEEEeCCCCeEEEEEeEEecccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCC
Confidence 4579999995 6899999887652 1 456788888899999999
Q ss_pred ChhHHHHH
Q 003077 776 GCFQALFS 783 (850)
Q Consensus 776 G~gr~L~~ 783 (850)
|.|+.|-.
T Consensus 133 ~~G~LLSr 140 (335)
T TIGR03243 133 GNGRLLSR 140 (335)
T ss_pred CchhhHHH
Confidence 99977644
No 174
>PRK10456 arginine succinyltransferase; Provisional
Probab=35.12 E-value=61 Score=37.01 Aligned_cols=50 Identities=16% Similarity=0.132 Sum_probs=39.1
Q ss_pred cceEEEEEEe--CCEEEEeEEEEEE-c-----------------------------------CceEEEeEeEeecccccc
Q 003077 734 GGMYSVILTV--KSVVVSAGLLRIF-G-----------------------------------REVAELPLVATCREYQGK 775 (850)
Q Consensus 734 ~Gfy~~vl~~--~~~~V~aA~lri~-g-----------------------------------~~~AElp~vAt~~~~Rgq 775 (850)
..-|.+||++ .|+|||++.|..- | ++..||--+-++++||+-
T Consensus 55 ~~~YlFVLED~~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfl~p~~R~~ 134 (344)
T PRK10456 55 EQGYVFVLEDSETGTVAGICAIEVAVGLNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSELCTLFLDPDWRKE 134 (344)
T ss_pred CccEEEEEEeCCCCcEEEEEeEEecccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCceeEEEEECHHHcCC
Confidence 4578999984 6899999887652 1 456788888889999999
Q ss_pred ChhHHHHH
Q 003077 776 GCFQALFS 783 (850)
Q Consensus 776 G~gr~L~~ 783 (850)
|.|+.|-.
T Consensus 135 ~~G~LLSr 142 (344)
T PRK10456 135 GNGYLLSK 142 (344)
T ss_pred CchhHHHH
Confidence 99977644
No 175
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=34.82 E-value=8.2 Score=50.14 Aligned_cols=50 Identities=26% Similarity=0.502 Sum_probs=32.7
Q ss_pred CCCcccccccccCCC-ceeee--CCCCCccCccccCC--------CCCCCCCcccccCCCC
Q 003077 504 TGGSDDMCHVCGDGE-NLLLC--NGCPLAFHAACLDP--------LLIPESGWRCPNCRQG 553 (850)
Q Consensus 504 ~~~~dd~C~vCgdgG-~Ll~C--d~C~~afH~~Cl~p--------~~vp~g~W~C~~C~~~ 553 (850)
.++.||+|.+|-... ...-| -+|..-||..|... +.+..|-..||.|.+.
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~ 3542 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNK 3542 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccch
Confidence 357788999996431 11112 25999999999753 2344566789999873
No 176
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=34.28 E-value=2.4e+02 Score=30.93 Aligned_cols=69 Identities=20% Similarity=0.180 Sum_probs=45.3
Q ss_pred cceEEEEEEe-CCEEEEeEEEEEEc-CceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchh
Q 003077 734 GGMYSVILTV-KSVVVSAGLLRIFG-REVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAE 803 (850)
Q Consensus 734 ~Gfy~~vl~~-~~~~V~aA~lri~g-~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~ 803 (850)
.++..+|++. +|+++|.+.+-..+ .+.+-+-+.=.+++ -=+|+-..|+..+-+.|++-|++.|-|..++
T Consensus 178 ~~~~~~~~~~~dgki~af~~~~~~~~~~~~~~~~~k~~~~-a~~G~~e~l~~~~~~~~~~~g~~~lnLg~ap 248 (299)
T PF09924_consen 178 LGLRGFVARVADGKIVAFAIGSPLGGRDGWSIDFEKADPD-APKGIYEFLNVEFAEHLKAEGVEYLNLGFAP 248 (299)
T ss_dssp HT-EEEEEEE-TTEEEEEEEEEEEE-TTEEEEEEEEE-TT--STTHHHHHHHHHHHHS--TT--EEE-----
T ss_pred cCceEEEEEECCCcEEEEEEEEEccCCccEEEEEEecCCC-CCCcHHHHHHHHHHHhhhhCCceEEEccccc
Confidence 4666777788 99999999987666 56665555544555 3468899999999999999999999977664
No 177
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=33.01 E-value=25 Score=40.09 Aligned_cols=47 Identities=23% Similarity=0.568 Sum_probs=35.6
Q ss_pred ceeecCCCCCccCCCcCCCCCCCCccCCCCCCcEecCCchhHHHHHhhh
Q 003077 595 TVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNRIHAALQDF 643 (850)
Q Consensus 595 ~LL~CdqC~r~fHv~CL~~~g~~~L~evP~g~WfCc~~C~~i~~~LqkL 643 (850)
-++.|+.|..|||..|. +.+++.....+...|+| ..|+.....++..
T Consensus 74 ~~~~cd~C~~~~~~ec~-~v~~~~~e~p~~~~~~c-~~c~~~~~~~~~~ 120 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECW-EVGTAEKEAPKEDPKVC-DECKEAQDGMSES 120 (345)
T ss_pred hhhcccccccccccccc-ccCchhhcCCccccccc-cccchhhhhhhhh
Confidence 68999999999999993 22344555566788999 9999887655543
No 178
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=32.50 E-value=16 Score=29.37 Aligned_cols=24 Identities=21% Similarity=0.124 Sum_probs=19.3
Q ss_pred CcchhhhhhhhccccchhhhhhhH
Q 003077 673 TMNDVQWQMLKKAQCFEEKEKSLL 696 (850)
Q Consensus 673 ~~~~vkWqlLs~~~~swe~~~~lL 696 (850)
.+|.|+|+.+++.+++|++...+.
T Consensus 20 ~~y~VkW~g~~~~~~tWe~~~~l~ 43 (55)
T cd00024 20 YEYLVKWKGYSYSEDTWEPEENLE 43 (55)
T ss_pred EEEEEEECCCCCccCccccHHHhC
Confidence 469999999999999999544433
No 179
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=32.24 E-value=61 Score=35.04 Aligned_cols=44 Identities=9% Similarity=0.212 Sum_probs=40.3
Q ss_pred ChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEEcCH
Q 003077 776 GCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRKMSR 820 (850)
Q Consensus 776 G~gr~L~~~iE~~l~~lgv~~LvL~A~~~A~~~w~~kfGF~~i~~ 820 (850)
|-...|+..|+++|++.|+.+|+.-+..++.+.|. +.||...+.
T Consensus 21 ~~~~~~~~~~~~~a~~~~~~ki~~~~~~~~~~~~~-~~g~~~e~~ 64 (266)
T TIGR03827 21 NDVEALIPDLDALAKKEGYTKIIAKVPGSDKPLFE-ERGYLEEAK 64 (266)
T ss_pred ccHHHHHHHHHHHHHHcCCcEEEEEccHHHHHHHH-HCCCeEEEe
Confidence 33789999999999999999999999999999999 999999844
No 180
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=31.75 E-value=34 Score=36.00 Aligned_cols=38 Identities=26% Similarity=0.868 Sum_probs=30.0
Q ss_pred cccccccccCC--------CceeeeCCCCCccCccccCCCCCCCCCcccccCC
Q 003077 507 SDDMCHVCGDG--------ENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCR 551 (850)
Q Consensus 507 ~dd~C~vCgdg--------G~Ll~Cd~C~~afH~~Cl~p~~vp~g~W~C~~C~ 551 (850)
..-.|.+|.+. .....|..|...||..|... =.||.|.
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~-------~~CpkC~ 196 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK-------KSCPKCA 196 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC-------CCCCCcH
Confidence 44689999854 36789999999999999974 2288885
No 181
>KOG1642 consensus Ribonuclease, T2 family [RNA processing and modification]
Probab=31.50 E-value=29 Score=37.80 Aligned_cols=61 Identities=23% Similarity=0.396 Sum_probs=45.3
Q ss_pred eeechhHHHHhcccc-CCCC--CCcccccCCCcHHH---HHHHHhcC---------chhhHHHHHHHhhCCCCCCC
Q 003077 260 KVVSAHEFEQHAGAK-TRHP--NNHIYLENGKPIYS---IIQELKTA---------PLGILEEVVKKVAGSSFNEG 320 (850)
Q Consensus 260 ~v~s~s~FE~HAG~~-~~~p--~~~I~lenG~sL~~---v~~~~k~~---------~l~~l~~~i~~~~g~~~~~~ 320 (850)
.-+=.-+||.|.-++ +-.| ++|=||+.+-.|++ ++..|+++ +++.++.||.+++|..+...
T Consensus 116 ~~fW~HEweKHGTCa~sv~~~~dq~~YF~~~L~l~~k~~l~~~L~~~gI~p~~~~y~l~~I~nAi~~~~G~~p~I~ 191 (263)
T KOG1642|consen 116 ESFWKHEWEKHGTCASSVFPLCDQHKYFETTLKLKQKLDLLSILKKAGIKPDDNFYSLADIKNAIKEAIGKTPGIE 191 (263)
T ss_pred chhhhhhhhccCchhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCceeHHHHHHHHHHHhCCCCceE
Confidence 345567888888766 5555 89999999988864 55556543 67789999999999876544
No 182
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=30.89 E-value=29 Score=38.30 Aligned_cols=37 Identities=32% Similarity=0.826 Sum_probs=17.8
Q ss_pred CCcccccccccC-------------CCceeeeCCCCCccCccccCCCCCCCCCcccccCC
Q 003077 505 GGSDDMCHVCGD-------------GENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCR 551 (850)
Q Consensus 505 ~~~dd~C~vCgd-------------gG~Ll~Cd~C~~afH~~Cl~p~~vp~g~W~C~~C~ 551 (850)
......|.+||. |-..+.|..|...+|.. ...|+.|-
T Consensus 169 ~w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~----------R~~Cp~Cg 218 (290)
T PF04216_consen 169 GWQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV----------RIKCPYCG 218 (290)
T ss_dssp -TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE------------TTS-TTT-
T ss_pred CccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeec----------CCCCcCCC
Confidence 345579999983 12678888887766632 34577774
No 183
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=30.81 E-value=23 Score=40.14 Aligned_cols=24 Identities=25% Similarity=0.294 Sum_probs=20.2
Q ss_pred EEEeEeEeeccccccChhHHHHHH
Q 003077 761 AELPLVATCREYQGKGCFQALFSC 784 (850)
Q Consensus 761 AElp~vAt~~~~RgqG~gr~L~~~ 784 (850)
--|--|-|.|.||++|||+.||+.
T Consensus 263 yNLaCILtLP~yQRrGYG~lLIdF 286 (395)
T COG5027 263 YNLACILTLPPYQRRGYGKLLIDF 286 (395)
T ss_pred CceEEEEecChhHhcccceEeeee
Confidence 346788999999999999988764
No 184
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=29.54 E-value=36 Score=43.54 Aligned_cols=46 Identities=39% Similarity=1.115 Sum_probs=37.3
Q ss_pred cccccccccCCC--ceeeeCCCCCccCccccCC--CCCCCCCcccccCCC
Q 003077 507 SDDMCHVCGDGE--NLLLCNGCPLAFHAACLDP--LLIPESGWRCPNCRQ 552 (850)
Q Consensus 507 ~dd~C~vCgdgG--~Ll~Cd~C~~afH~~Cl~p--~~vp~g~W~C~~C~~ 552 (850)
....|..|..+. .++.|++|...||..|..+ +.++++.|.|+.|..
T Consensus 154 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (904)
T KOG1246|consen 154 DYPQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIP 203 (904)
T ss_pred cchhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCcccc
Confidence 346688887554 3349999999999999997 578899999999965
No 185
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=29.07 E-value=44 Score=39.95 Aligned_cols=47 Identities=23% Similarity=0.373 Sum_probs=39.2
Q ss_pred CcccccccccCCCceeeeCCCCCccCccccCCC-CCC--CCCcccccCCC
Q 003077 506 GSDDMCHVCGDGENLLLCNGCPLAFHAACLDPL-LIP--ESGWRCPNCRQ 552 (850)
Q Consensus 506 ~~dd~C~vCgdgG~Ll~Cd~C~~afH~~Cl~p~-~vp--~g~W~C~~C~~ 552 (850)
..+-+|..|.-.|..+.|+.|-|+||..|+.+. ..+ +..|.|+.|..
T Consensus 58 N~d~~cfechlpg~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~s 107 (588)
T KOG3612|consen 58 NIDPFCFECHLPGAVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPYS 107 (588)
T ss_pred CCCcccccccCCcceeeeehhhccccccccCcchhhccccccccCCcccc
Confidence 345789999999999999999999999999983 222 45799999866
No 186
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=29.06 E-value=20 Score=26.12 Aligned_cols=28 Identities=25% Similarity=0.649 Sum_probs=11.7
Q ss_pred ccccCCCCcCCCCccCCCceeecCCCCCccCCCc
Q 003077 577 GCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGC 610 (850)
Q Consensus 577 ~C~iC~~~d~~~~~~d~~~LL~CdqC~r~fHv~C 610 (850)
.|.+|+++. +......|.+|+-..|..|
T Consensus 2 ~C~~C~~~~------~~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPI------DGGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS----------S--EEE-TTT-----HHH
T ss_pred cCCcCCCcC------CCCceEECccCCCccChhc
Confidence 478888763 2247889999999999877
No 187
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=28.17 E-value=25 Score=41.14 Aligned_cols=62 Identities=15% Similarity=0.184 Sum_probs=44.4
Q ss_pred cCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEe-------cchhhH-HHHHHhccCcEEcC
Q 003077 757 GREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVL-------PAAEKA-ESIWTKKFGFRKMS 819 (850)
Q Consensus 757 g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL-------~A~~~A-~~~w~~kfGF~~i~ 819 (850)
....|.|-+|.|+|+||+-|+|++-|.+.-++..+--++...- -||.-- -+|++ +-||.-+=
T Consensus 238 ntaaariarvvvhpdyr~dglg~~sv~~a~ewI~eRriPEmr~rkHlvetiaqmarynpffe-~~gfkylw 307 (593)
T COG2401 238 NTAAARIARVVVHPDYRADGLGQLSVIAALEWIIERRIPEMRPRKHLVETIAQMARYNPFFE-KVGFKYLW 307 (593)
T ss_pred hhhhhheeEEEeccccccCccchhHHHHHHHHHHHhhChhhhhhhhHHHHHHHHHhcCchhh-hhceeeee
Confidence 4456778899999999999999999998888877777664432 222111 15555 88987653
No 188
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=27.74 E-value=31 Score=30.24 Aligned_cols=29 Identities=28% Similarity=0.663 Sum_probs=12.0
Q ss_pred cccccccC----CC--ceeeeC--CCCCccCccccCC
Q 003077 509 DMCHVCGD----GE--NLLLCN--GCPLAFHAACLDP 537 (850)
Q Consensus 509 d~C~vCgd----gG--~Ll~Cd--~C~~afH~~Cl~p 537 (850)
..|.||-. .+ ..+.|+ .|...||..||--
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~ 39 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSE 39 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHH
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHH
Confidence 46888863 23 358898 7999999999964
No 189
>PTZ00062 glutaredoxin; Provisional
Probab=27.64 E-value=2.5e+02 Score=29.75 Aligned_cols=62 Identities=11% Similarity=0.018 Sum_probs=42.8
Q ss_pred hhccccchhhhhhhHhHHHHHHhhcccccc-ccCCCCcccceeeccCCCCceecceEEEEEEeCCEEEEeEEEEEEcCce
Q 003077 682 LKKAQCFEEKEKSLLSSATAIFRECFDPII-AECGRDLIPVMVYGRNISGQEFGGMYSVILTVKSVVVSAGLLRIFGREV 760 (850)
Q Consensus 682 Ls~~~~swe~~~~lLa~Al~If~EcFdPIi-~~Sg~DLIp~MVygr~~~~~~~~Gfy~~vl~~~~~~V~aA~lri~g~~~ 760 (850)
+-++++.|.+.-..+..++..+.+.|..+. .+=.+| ++..+..++|++.+|+.|. |+.|.+.
T Consensus 21 vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-------------~~V~~vPtfv~~~~g~~i~----r~~G~~~ 83 (204)
T PTZ00062 21 VLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-------------DANNEYGVFEFYQNSQLIN----SLEGCNT 83 (204)
T ss_pred EEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-------------cCcccceEEEEEECCEEEe----eeeCCCH
Confidence 345667787666677777777777773222 222222 8899999999999999977 5567664
No 190
>PF14545 DBB: Dof, BCAP, and BANK (DBB) motif,
Probab=26.68 E-value=2e+02 Score=28.99 Aligned_cols=61 Identities=23% Similarity=0.333 Sum_probs=45.6
Q ss_pred cceEEEEEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhcc
Q 003077 734 GGMYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKF 813 (850)
Q Consensus 734 ~Gfy~~vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgv~~LvL~A~~~A~~~w~~kf 813 (850)
.|+..+-+|.||.++|++.|..+.+ |.+||++|+.. +.-.+-+=. .|
T Consensus 65 ag~V~v~v~~~g~~~~~~~ikyys~-----------------------~~el~~lL~~~---------~~PvefmCQ-a~ 111 (142)
T PF14545_consen 65 AGSVNVRVYCDGVSLGTRQIKYYSR-----------------------MRELEQLLRKA---------ANPVEFMCQ-AF 111 (142)
T ss_pred CceEEEEEEECCEEEEEEeEEEEec-----------------------HHHHHHHHHhc---------CChhhhhhh-hc
Confidence 7889999999999999999987654 67888888762 222233334 88
Q ss_pred CcEEcCHHHHHhhh
Q 003077 814 GFRKMSRERLLKYQ 827 (850)
Q Consensus 814 GF~~i~~~~~~~~~ 827 (850)
|+...+.++|-.++
T Consensus 112 ~i~p~~~E~LD~~L 125 (142)
T PF14545_consen 112 GISPNDREELDNLL 125 (142)
T ss_pred CCCCCCHHHHHHHH
Confidence 88888888877765
No 191
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=26.32 E-value=24 Score=32.40 Aligned_cols=29 Identities=28% Similarity=0.754 Sum_probs=17.9
Q ss_pred ccccCCCCcCCCCccCCCceeecCCCCCccCCCcCC
Q 003077 577 GCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLR 612 (850)
Q Consensus 577 ~C~iC~~~d~~~~~~d~~~LL~CdqC~r~fHv~CL~ 612 (850)
.|..|+-++ ++-.++ -.+|...||.+|+.
T Consensus 34 ~Cp~Ck~Pg------d~Cplv-~g~C~H~FH~hCI~ 62 (85)
T PF12861_consen 34 CCPDCKFPG------DDCPLV-WGKCSHNFHMHCIL 62 (85)
T ss_pred CCCCccCCC------CCCcee-eccCccHHHHHHHH
Confidence 455555543 222344 34599999999975
No 192
>PF13066 DUF3929: Protein of unknown function (DUF3929)
Probab=25.15 E-value=66 Score=27.14 Aligned_cols=30 Identities=33% Similarity=0.336 Sum_probs=24.9
Q ss_pred cccCCCcHHHHHHHHhcCchhhHHHHHHHh
Q 003077 283 YLENGKPIYSIIQELKTAPLGILEEVVKKV 312 (850)
Q Consensus 283 ~lenG~sL~~v~~~~k~~~l~~l~~~i~~~ 312 (850)
|||||+++.||-.-|-.+--.+|+.+-..+
T Consensus 4 ~leng~~ikdikefcyrd~~k~lervahrv 33 (65)
T PF13066_consen 4 HLENGETIKDIKEFCYRDQGKMLERVAHRV 33 (65)
T ss_pred EccCCcChHHHHHHHhhhhhHHHHHHHHHh
Confidence 799999999999888888888887665533
No 193
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=25.14 E-value=61 Score=31.64 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=19.4
Q ss_pred eEeeccccccChhHHHHHHHHHH
Q 003077 766 VATCREYQGKGCFQALFSCIERL 788 (850)
Q Consensus 766 vAt~~~~RgqG~gr~L~~~iE~~ 788 (850)
+.|.+..|++|+|++|++++.+.
T Consensus 52 FyVhes~QR~G~Gk~LF~~ML~~ 74 (120)
T PF05301_consen 52 FYVHESRQRRGYGKRLFDHMLQE 74 (120)
T ss_pred EEEEeceeccCchHHHHHHHHHH
Confidence 35788999999999999987654
No 194
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=24.20 E-value=33 Score=40.13 Aligned_cols=70 Identities=29% Similarity=0.536 Sum_probs=42.7
Q ss_pred cccccccccC---C-CceeeeCCCCCccCccccCCCCCCCCCcccccCCCCCCCCccccccccCCccCCCCCccccccCC
Q 003077 507 SDDMCHVCGD---G-ENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQGHSSSMSRSVDLKGGLEAPGAEVGGCVICR 582 (850)
Q Consensus 507 ~dd~C~vCgd---g-G~Ll~Cd~C~~afH~~Cl~p~~vp~g~W~C~~C~~~~~~ea~dpI~~~r~~~~~~~e~~~C~iC~ 582 (850)
.-..|.||-. . -..+.=--|..+||..|+... ++-.||.|+.....+ ..+...|..|+
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w----~~~scpvcR~~q~p~--------------~ve~~~c~~c~ 235 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW----WDSSCPVCRYCQSPS--------------VVESSLCLACG 235 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhc----ccCcChhhhhhcCcc--------------hhhhhhhhhhc
Confidence 3467999973 2 234455569999999999762 234577776432211 11234788887
Q ss_pred CCcCCCCccCCCceeecCCCC
Q 003077 583 SHDFSAATFDDRTVIYCDQCE 603 (850)
Q Consensus 583 ~~d~~~~~~d~~~LL~CdqC~ 603 (850)
.. ..|.+|--|+
T Consensus 236 ~~---------~~LwicliCg 247 (493)
T KOG0804|consen 236 CT---------EDLWICLICG 247 (493)
T ss_pred cc---------ccEEEEEEcc
Confidence 53 4577777664
No 195
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.02 E-value=23 Score=38.85 Aligned_cols=34 Identities=29% Similarity=0.566 Sum_probs=23.2
Q ss_pred CCCcccccccccCC--------C--ceeeeCCCCCccCccccCC
Q 003077 504 TGGSDDMCHVCGDG--------E--NLLLCNGCPLAFHAACLDP 537 (850)
Q Consensus 504 ~~~~dd~C~vCgdg--------G--~Ll~Cd~C~~afH~~Cl~p 537 (850)
..-+|..|.+|+.. | +-+.=-.|...||..|+.-
T Consensus 220 khl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrG 263 (328)
T KOG1734|consen 220 KHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRG 263 (328)
T ss_pred CCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhh
Confidence 35678899999842 1 1222234899999999865
No 196
>cd04266 DUF619-NAGS-FABP DUF619 domain of N-acetylglutamate Synthase of the fungal arginine-biosynthetic pathway. DUF619-NAGS-FABP: This family includes the DUF619 domain of N-acetylglutamate synthase (NAGS) of the fungal arginine-biosynthetic pathway (FABP). This NAGS (also known as arginine-requiring protein 2 or ARG2) consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. NAGS catalyzes the formation of NAG from acetylcoenzyme A and L-glutamate. The DUF619 domain, yet to be characterized, is predicted to function in NAGS association in fungi.
Probab=22.99 E-value=1.9e+02 Score=27.81 Aligned_cols=46 Identities=22% Similarity=0.211 Sum_probs=37.2
Q ss_pred EeCCEEEEeEEEEEE------cCceEEEeEeEeeccccc-cChhHHHHHHHHH
Q 003077 742 TVKSVVVSAGLLRIF------GREVAELPLVATCREYQG-KGCFQALFSCIER 787 (850)
Q Consensus 742 ~~~~~~V~aA~lri~------g~~~AElp~vAt~~~~Rg-qG~gr~L~~~iE~ 787 (850)
|.++..=++|.+..- +..++-|-.+||.+..|| .|++..++.+|-+
T Consensus 15 y~~~~y~~~AIvt~e~~~~~~~~~v~yLdKFav~~~~~gl~gv~D~vf~~m~~ 67 (108)
T cd04266 15 IIAGDYEGAAILTWEGPDGSTPEKIAYLDKFAVLPKAQGSDGIADILFNAMLD 67 (108)
T ss_pred EEeCCCcEEEEEecCCCCccCCCCceEEEEEEEccccccccchHHHHHHHHHH
Confidence 455666667776543 367899999999999997 8999999999987
No 197
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=22.24 E-value=52 Score=39.36 Aligned_cols=39 Identities=15% Similarity=0.146 Sum_probs=26.8
Q ss_pred CCceeecCCCCCccCCCcCCCCCCCCccCCCCCCcEecCCchh
Q 003077 593 DRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNR 635 (850)
Q Consensus 593 ~~~LL~CdqC~r~fHv~CL~~~g~~~L~evP~g~WfCc~~C~~ 635 (850)
++..+.|+-|.|.||..|+.+.... ......|.| +.|..
T Consensus 69 pg~vl~c~vc~Rs~h~~c~sp~~q~---r~~s~p~~~-p~p~s 107 (588)
T KOG3612|consen 69 PGAVLKCIVCHRSFHENCQSPDPQK---RNYSVPSDK-PQPYS 107 (588)
T ss_pred CcceeeeehhhccccccccCcchhh---ccccccccC-Ccccc
Confidence 5678999999999999999864221 112446777 45543
No 198
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=22.12 E-value=1.2e+02 Score=34.13 Aligned_cols=12 Identities=42% Similarity=1.127 Sum_probs=9.3
Q ss_pred CCcccccccccC
Q 003077 505 GGSDDMCHVCGD 516 (850)
Q Consensus 505 ~~~dd~C~vCgd 516 (850)
.++...|.+||.
T Consensus 184 ~~~~~~CPvCGs 195 (309)
T PRK03564 184 GEQRQFCPVCGS 195 (309)
T ss_pred ccCCCCCCCCCC
Confidence 456789999984
No 199
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=21.77 E-value=25 Score=30.88 Aligned_cols=26 Identities=35% Similarity=0.821 Sum_probs=16.8
Q ss_pred CCCCCccCccccCCCCCCCCCcccccCC
Q 003077 524 NGCPLAFHAACLDPLLIPESGWRCPNCR 551 (850)
Q Consensus 524 d~C~~afH~~Cl~p~~vp~g~W~C~~C~ 551 (850)
..|+..||..|+.... .....||.|+
T Consensus 48 ~~C~H~FH~~Ci~~Wl--~~~~~CP~CR 73 (73)
T PF12678_consen 48 GPCGHIFHFHCISQWL--KQNNTCPLCR 73 (73)
T ss_dssp ETTSEEEEHHHHHHHH--TTSSB-TTSS
T ss_pred cccCCCEEHHHHHHHH--hcCCcCCCCC
Confidence 4599999999997411 1223788774
No 200
>cd03173 DUF619-like DUF619 domain of various N-acetylglutamate Kinases and N-acetylglutamate Synthases. DUF619-like: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. This subgroup also includes the DUF619 domain of the FABP N-acetylglutamate kinase (NAGK), the enzyme that catalyzes the second reaction of arginine
Probab=21.70 E-value=2.2e+02 Score=26.81 Aligned_cols=48 Identities=10% Similarity=0.115 Sum_probs=37.9
Q ss_pred EeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHH
Q 003077 742 TVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLL 789 (850)
Q Consensus 742 ~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l 789 (850)
|.++..=++|.+..-+..++.|-.+|+.+..++.|++..++.+|-+..
T Consensus 15 y~de~y~~~AIvt~~~~~v~~LdkFav~~~~~~~gv~D~vf~~i~~d~ 62 (98)
T cd03173 15 YADEPLEGVAIVTYEGNSIPYLDKFAVSDHLWLNNVTDNIFNLIRKDF 62 (98)
T ss_pred EEcCCccEEEEEecCCCCCEEEEEEEEcccccccCHHHHHHHHHHhhC
Confidence 445556666666443457999999999999999999999999988663
No 201
>PRK09555 feoA ferrous iron transport protein A; Reviewed
Probab=21.16 E-value=72 Score=28.32 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=20.6
Q ss_pred ChhhHHhhccCCCCCcEEEEEecCc
Q 003077 212 PTNVKKLLSTGILDGACVKYISTSR 236 (850)
Q Consensus 212 p~~~~~ll~tgll~g~~V~Y~~~~~ 236 (850)
+.-.+-|++-|++.|.+|+......
T Consensus 20 ~~~~~rL~~mGl~pG~~V~v~~~aP 44 (74)
T PRK09555 20 PAYRQKLLSLGMLPGSSFNVVRVAP 44 (74)
T ss_pred hHHHHHHHHcCCCCCCEEEEEEECC
Confidence 5566889999999999999986543
No 202
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=21.15 E-value=20 Score=37.82 Aligned_cols=17 Identities=35% Similarity=0.735 Sum_probs=13.8
Q ss_pred ceeecCCCCCccCCCcC
Q 003077 595 TVIYCDQCEKEFHVGCL 611 (850)
Q Consensus 595 ~LL~CdqC~r~fHv~CL 611 (850)
.-..|..|+++|-..|-
T Consensus 172 rpykc~~c~kaftqrcs 188 (267)
T KOG3576|consen 172 RPYKCSLCEKAFTQRCS 188 (267)
T ss_pred cccchhhhhHHHHhhcc
Confidence 34679999999998884
No 203
>PF04393 DUF535: Protein of unknown function (DUF535); InterPro: IPR007488 Family member Shigella flexneri VirK (Q99QA5 from SWISSPROT) is a virulence protein required for the expression, or correct membrane localisation of IcsA (VirG) on the bacterial cell surface [, ]. This family also includes Pasteurella haemolytica lapB (P32181 from SWISSPROT), which is thought to be membrane-associated.
Probab=20.16 E-value=3.9e+02 Score=29.71 Aligned_cols=70 Identities=13% Similarity=0.158 Sum_probs=49.5
Q ss_pred CCceecceEEEEEEeCC-EEEEeEEEEEEcCceEEEeEeEeeccccc--------------cChh--HHHHHHHHHHHhh
Q 003077 729 SGQEFGGMYSVILTVKS-VVVSAGLLRIFGREVAELPLVATCREYQG--------------KGCF--QALFSCIERLLCS 791 (850)
Q Consensus 729 ~~~~~~Gfy~~vl~~~~-~~V~aA~lri~g~~~AElp~vAt~~~~Rg--------------qG~g--r~L~~~iE~~l~~ 791 (850)
.+++-.|+.++.|..++ +++..+++-+...+--..=+|+....-++ .|+. +.||+++-.+|+.
T Consensus 119 ~~~~kEGel~L~L~~~~~~~ly~~tF~~~~~~~~~~l~IG~lQGp~~~~~~e~ik~~TK~~hGlrPK~ll~e~l~~la~~ 198 (288)
T PF04393_consen 119 HGFRKEGELSLSLRDEEGQRLYSLTFSFVPQNGENTLFIGGLQGPKSENAHEIIKSATKACHGLRPKRLLLEALQALARA 198 (288)
T ss_pred CCCCCceeeEEEEEcCCCceEEEEEEEEEccCCCceEEEEeeeCCCCCCChHHHHHHHHHhcCcCHHHHHHHHHHHHHHH
Confidence 46788999999999765 99999999887222122234444333333 1332 7899999999999
Q ss_pred CCccEEE
Q 003077 792 LNVENLV 798 (850)
Q Consensus 792 lgv~~Lv 798 (850)
+|++.|.
T Consensus 199 ~~~~~i~ 205 (288)
T PF04393_consen 199 LGIEQIL 205 (288)
T ss_pred cCCCEEE
Confidence 9999776
Done!