BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003080
         (850 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2R4V|A Chain A, Structure Of Human Clic2, Crystal Form A
 pdb|2R5G|A Chain A, Structure Of Human Clic2, Crystal Form B
          Length = 247

 Score = 30.8 bits (68), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 24  NQDFQLHPDELERWFLKIDHIFEHTRVPPIGEVLAPFYRTSVD 66
           N  F ++  EL+  F+KI+   E T  PP    L+P Y+ S D
Sbjct: 69  NPPFLVYNKELKTDFIKIEEFLEQTLAPPRYPHLSPKYKESFD 111


>pdb|2PER|A Chain A, Crystal Structure Of Human Chloride Intracellular Channel
           Protein 2
          Length = 267

 Score = 30.8 bits (68), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 24  NQDFQLHPDELERWFLKIDHIFEHTRVPPIGEVLAPFYRTSVD 66
           N  F ++  EL+  F+KI+   E T  PP    L+P Y+ S D
Sbjct: 89  NPPFLVYNKELKTDFIKIEEFLEQTLAPPRYPHLSPKYKESFD 131


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,337,138
Number of Sequences: 62578
Number of extensions: 985851
Number of successful extensions: 2037
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2032
Number of HSP's gapped (non-prelim): 7
length of query: 850
length of database: 14,973,337
effective HSP length: 107
effective length of query: 743
effective length of database: 8,277,491
effective search space: 6150175813
effective search space used: 6150175813
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)