BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003080
         (850 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P28867|KPCD_MOUSE Protein kinase C delta type OS=Mus musculus GN=Prkcd PE=1 SV=3
          Length = 674

 Score = 38.5 bits (88), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 83/216 (38%), Gaps = 22/216 (10%)

Query: 431 ENWNLFSDTHEEFQNYTVARDTFLAHLGATLWGSMRHVISPSIADGAFHYYETISFQLFF 490
           E +N+  D    F+ Y     TF  H G+ LWG ++  +            E     +  
Sbjct: 223 ERFNI--DMPHRFKVYNYMSPTFCDHCGSLLWGLVKQGLK----------CEDCGMNVHH 270

Query: 491 ITQEKVRQVKQLPVNLKSLMDGLSSLLLPSQKPVFSQRMLTLSEDPALAMAFSVARRAAA 550
             +EKV  +    +N K L + L+ +   +Q+   S R L  +E   +   F      + 
Sbjct: 271 KCREKVANL--CGINQKLLAEALNQV---TQR---SSRKLDTTESVGIYQGFEKKPEVSG 322

Query: 551 VPMLLVNGTYRKTVRSYVDSAILQYQLQRMNDRDSL-KGAHAHSRSTLEVPIFWFIHGDP 609
             +L  NGTY K         +  +  Q++  + S  K   A  +   +      +  D 
Sbjct: 323 SDILDNNGTYGKIWEGSTRCTLENFTFQKVLGKGSFGKVLLAELKGKDKYFAIKCLKKDV 382

Query: 610 LLVDKHYQAKALSDMVIVVQSEEPSWESHLQCNGQS 645
           +L+D   +   +   V+ +  E P + +HL C  Q+
Sbjct: 383 VLIDDDVECTMVEKRVLALAWESP-FLTHLICTFQT 417


>sp|P26749|VG10_BPP22 Packaged DNA stabilization protein gp10 OS=Enterobacteria phage P22
           GN=10 PE=4 SV=3
          Length = 472

 Score = 36.2 bits (82), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 16/119 (13%)

Query: 538 LAMAFSVARRAAAVPMLLVNGTYRKTVRSY----VDSAILQYQLQRMNDRDSLKGAHAHS 593
           ++MA     +A  V   LV   Y  TV++      DS   QY+L  + D   L+G +A S
Sbjct: 95  VSMAHGRTSQAVGVNGQLVEYRYDGTVKTVSNWPADSGFTQYELGSVRDITRLRGRYAWS 154

Query: 594 RSTLEVPIFWFI-----HGDPLLVDKHYQAKALSDMVIVVQSEEPSWESHLQCNGQSLL 647
           +   +    WFI        P      Y+A++  D +I +     +W   + C G S +
Sbjct: 155 KDGTDS---WFITDLEDESHPDRYSAQYRAESQPDGIIGIG----TWRDFIVCFGSSTI 206


>sp|Q21691|NRDE3_CAEEL Nuclear RNAi defective-3 protein OS=Caenorhabditis elegans
           GN=nrde-3 PE=1 SV=1
          Length = 1057

 Score = 33.9 bits (76), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 14/47 (29%), Positives = 26/47 (55%)

Query: 168 SDSEITFLKENKDLQTKILQSGNIPESILALDKIRRPLYEKHPMMKF 214
           S  E+T +K      TKI+    +P++I+ +D  + P Y+   ++KF
Sbjct: 290 SPDEVTLIKSGFVKTTKIVDRDGVPDAIMTVDTTKSPFYKDTSLLKF 336


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.135    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 312,799,490
Number of Sequences: 539616
Number of extensions: 13270851
Number of successful extensions: 35628
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 35623
Number of HSP's gapped (non-prelim): 13
length of query: 850
length of database: 191,569,459
effective HSP length: 126
effective length of query: 724
effective length of database: 123,577,843
effective search space: 89470358332
effective search space used: 89470358332
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)