Query 003080
Match_columns 850
No_of_seqs 69 out of 71
Neff 4.1
Searched_HMMs 46136
Date Thu Mar 28 16:37:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003080.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003080hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0259 Tyrosine aminotransfer 66.9 7.8 0.00017 44.7 4.8 86 81-180 122-229 (447)
2 PF09577 Spore_YpjB: Sporulati 63.3 24 0.00051 38.2 7.4 33 813-845 191-224 (232)
3 COG5509 Uncharacterized small 53.7 10 0.00022 33.3 2.2 42 388-429 22-63 (65)
4 PF05545 FixQ: Cbb3-type cytoc 51.0 9.1 0.0002 31.4 1.5 22 823-844 13-34 (49)
5 TIGR02878 spore_ypjB sporulati 48.7 58 0.0013 35.4 7.3 36 810-845 189-225 (233)
6 PF06698 DUF1192: Protein of u 45.2 19 0.00041 31.5 2.6 48 382-429 12-59 (59)
7 PF08261 Carcinustatin: Carcin 44.5 11 0.00023 21.1 0.6 7 304-310 1-7 (8)
8 PF12729 4HB_MCP_1: Four helix 36.8 3.6E+02 0.0078 25.3 11.9 72 709-784 72-143 (181)
9 cd01324 cbb3_Oxidase_CcoQ Cyto 36.6 22 0.00047 29.6 1.6 24 823-846 14-37 (48)
10 COG5074 t-SNARE complex subuni 36.3 1.3E+02 0.0028 33.1 7.6 68 708-780 127-204 (280)
11 PRK11509 hydrogenase-1 operon 34.3 2.3E+02 0.0051 28.3 8.5 87 485-580 35-123 (132)
12 COG4736 CcoQ Cbb3-type cytochr 28.0 34 0.00073 30.1 1.4 26 821-846 11-36 (60)
13 PF10475 DUF2450: Protein of u 26.4 2.9E+02 0.0063 30.3 8.5 40 754-793 116-158 (291)
14 PF01102 Glycophorin_A: Glycop 25.3 26 0.00056 34.5 0.3 20 830-849 78-97 (122)
15 TIGR01478 STEVOR variant surfa 24.4 28 0.00061 38.8 0.4 23 824-846 266-288 (295)
16 PTZ00370 STEVOR; Provisional 23.8 30 0.00064 38.7 0.4 23 824-846 262-284 (296)
17 PF03952 Enolase_N: Enolase, N 23.0 1.5E+02 0.0033 29.4 5.1 56 316-374 41-97 (132)
18 PF03670 UPF0184: Uncharacteri 21.1 3.7E+02 0.0079 25.3 6.7 20 717-736 27-46 (83)
19 PF14845 Glycohydro_20b2: beta 20.3 82 0.0018 30.0 2.6 29 139-168 90-123 (128)
No 1
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=66.90 E-value=7.8 Score=44.74 Aligned_cols=86 Identities=19% Similarity=0.321 Sum_probs=64.7
Q ss_pred EeEEEEEEecChhhHHHHHHHHHHhcccCC---CCCC-------------------CCCCcceeeecccchHHHHHHhhh
Q 003080 81 YNFSVHAIQMGEKVTSVFEHAIKVLARKDD---VSTN-------------------RDDVDALWQVDVSMMDVLFTSLVD 138 (850)
Q Consensus 81 ynf~~hvi~~~~~V~~~fE~AI~~~~R~~d---~~~~-------------------~~~~~~~~qvd~~~m~~l~~slv~ 138 (850)
+-++..=|-+-.+-++.+|-||..++||-. .+.| +=-.+..|-+|-+.|++|.|
T Consensus 122 ~kl~a~DV~ltsGC~qAIe~~i~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~D---- 197 (447)
T KOG0259|consen 122 NKLTADDVVLTSGCSQAIELAISSLANPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALAD---- 197 (447)
T ss_pred CccCcCceEEeccchHHHHHHHHHhcCCCCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhc----
Confidence 567777777888889999999999999877 1111 11146679999999999887
Q ss_pred hhccCCceEEEEECCCCCCCCcccccccCCHHHHHHhhhchH
Q 003080 139 YLQLENAYNIFILNPKHEKRARYGYRRGLSDSEITFLKENKD 180 (850)
Q Consensus 139 ~L~L~~sY~i~ilNPk~~~~~~YGYR~G~S~~E~~~l~~n~~ 180 (850)
||--.|+|+||++.-..+| |.+-++.+-+-+.
T Consensus 198 ----ENT~AivviNP~NPcGnVy------s~~HL~kiae~A~ 229 (447)
T KOG0259|consen 198 ----ENTVAIVVINPNNPCGNVY------SEDHLKKIAETAK 229 (447)
T ss_pred ----cCeeEEEEeCCCCCCcccc------cHHHHHHHHHHHH
Confidence 6999999999999444666 5556666665443
No 2
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=63.34 E-value=24 Score=38.21 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=25.7
Q ss_pred cccccccccccccc-hhHHHHHHHHHhhhcCCCC
Q 003080 813 RDRKVDVEFDLTTI-PAFLIVLGILYVLLKPRRP 845 (850)
Q Consensus 813 k~~~~~~~~~~~~v-~~~~vv~~~l~~~lr~r~~ 845 (850)
++.-.+|++-|+.+ .+++|++++.|+.||.-|-
T Consensus 191 k~d~~dpsl~Wv~l~iG~iIi~tLtYvGwRKYrg 224 (232)
T PF09577_consen 191 KEDEADPSLIWVMLSIGGIIIATLTYVGWRKYRG 224 (232)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788889855 5689999999999997654
No 3
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=53.71 E-value=10 Score=33.33 Aligned_cols=42 Identities=33% Similarity=0.434 Sum_probs=37.0
Q ss_pred hhhhhhHHHHHHHHHHHHhhccccCCccchhhHHHHHHHHHh
Q 003080 388 VKLALCEELDERMQDLKNELQSFEGEEYDENHKRKAIEALRR 429 (850)
Q Consensus 388 ~~~~lC~el~e~~~~lk~~l~~~~~~~~~~~~~~~a~~~l~r 429 (850)
..+....||.+|+--|..|++.++.+.-.+...+.|-++|+|
T Consensus 22 LsllsV~El~eRIalLq~EIeRlkAe~~kK~~srsAAeaLFr 63 (65)
T COG5509 22 LSLLSVAELEERIALLQAEIERLKAELAKKKASRSAAEALFR 63 (65)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHh
Confidence 456667899999999999999999998888889999999987
No 4
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=51.01 E-value=9.1 Score=31.40 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=17.7
Q ss_pred cccchhHHHHHHHHHhhhcCCC
Q 003080 823 LTTIPAFLIVLGILYVLLKPRR 844 (850)
Q Consensus 823 ~~~v~~~~vv~~~l~~~lr~r~ 844 (850)
+.++..++++++++++++|||+
T Consensus 13 ~~~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 13 IGTVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHHHcccc
Confidence 4566778888888899999987
No 5
>TIGR02878 spore_ypjB sporulation protein YpjB. Members of this protein, YpjB, family are restricted to a subset of endospore-forming bacteria, including Bacillus species but not CLostridium or some others. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon, where sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect. This protein family is not, however, a part of the endospore formation minimal gene set.
Probab=48.69 E-value=58 Score=35.44 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=28.0
Q ss_pred ccccccccccccccccch-hHHHHHHHHHhhhcCCCC
Q 003080 810 HCTRDRKVDVEFDLTTIP-AFLIVLGILYVLLKPRRP 845 (850)
Q Consensus 810 ~C~k~~~~~~~~~~~~v~-~~~vv~~~l~~~lr~r~~ 845 (850)
.-.|+--.||.+=|+.++ +++||+.+-|+.||.-|.
T Consensus 189 ~~vkkD~aDPSLiWvmistGg~IvltLTYVGwRKYkg 225 (233)
T TIGR02878 189 DGVKEDEADPSLLWVMISTGGIIVATLTYVGWRKYKG 225 (233)
T ss_pred cccccCCCCcHHHHHHHHhhHHHHHHHhhhhhhhhhh
Confidence 334555777888899774 589999999999998665
No 6
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=45.21 E-value=19 Score=31.47 Aligned_cols=48 Identities=33% Similarity=0.424 Sum_probs=40.0
Q ss_pred ccCccchhhhhhHHHHHHHHHHHHhhccccCCccchhhHHHHHHHHHh
Q 003080 382 HCKGRKVKLALCEELDERMQDLKNELQSFEGEEYDENHKRKAIEALRR 429 (850)
Q Consensus 382 hc~~r~~~~~lC~el~e~~~~lk~~l~~~~~~~~~~~~~~~a~~~l~r 429 (850)
|-.|+......-+||++|+..|+.|+...+.+--.+...+.|-++||+
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~~K~a~r~AAealFk 59 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARLEAAIAKKSASRAAAEALFK 59 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345566677788999999999999999999988888888888888764
No 7
>PF08261 Carcinustatin: Carcinustatin peptide
Probab=44.45 E-value=11 Score=21.13 Aligned_cols=7 Identities=71% Similarity=1.621 Sum_probs=6.1
Q ss_pred CCCCccc
Q 003080 304 AGPFSWG 310 (850)
Q Consensus 304 AGPf~wG 310 (850)
|||+++|
T Consensus 1 agpy~fg 7 (8)
T PF08261_consen 1 AGPYSFG 7 (8)
T ss_pred CCccccc
Confidence 7999887
No 8
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=36.77 E-value=3.6e+02 Score=25.27 Aligned_cols=72 Identities=11% Similarity=0.082 Sum_probs=46.9
Q ss_pred HhHHhhhHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHH
Q 003080 709 SDTIARSYIISTLEESIQTVNSAIHLLLMERTTEKTFKLFQSQERELVNKYNYVVSLWRRISTVTGDLRYADAMRQ 784 (850)
Q Consensus 709 ~Daa~RN~Ilt~L~~Si~~vnsai~~L~~~~t~~k~f~~~~s~~~e~~~r~n~v~~lwr~isa~s~~ldy~~Al~~ 784 (850)
.|...+..+...++.....++..+..+.....+.+. +..-.++...|+........+-.++...+..+|..+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~a~~~ 143 (181)
T PF12729_consen 72 TDPEERQEIEKEIDEARAEIDEALEEYEKLILSPEE----KQLLEEFKEAWKAYRKLRDQVIELAKSGDNDEARAI 143 (181)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 355566777777778888888888888765444332 122335666777667666666666667888887665
No 9
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=36.56 E-value=22 Score=29.65 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=18.2
Q ss_pred cccchhHHHHHHHHHhhhcCCCCC
Q 003080 823 LTTIPAFLIVLGILYVLLKPRRPK 846 (850)
Q Consensus 823 ~~~v~~~~vv~~~l~~~lr~r~~k 846 (850)
|..+.++++++++++|++|||+.|
T Consensus 14 ~~l~~~~~~Figiv~wa~~p~~k~ 37 (48)
T cd01324 14 WGLLYLALFFLGVVVWAFRPGRKK 37 (48)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcch
Confidence 445556688888899999998754
No 10
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=36.33 E-value=1.3e+02 Score=33.13 Aligned_cols=68 Identities=18% Similarity=0.267 Sum_probs=48.6
Q ss_pred hHhHHhhhHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHh----------hhhHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 003080 708 QSDTIARSYIISTLEESIQTVNSAIHLLLMERTTEKTFKLF----------QSQERELVNKYNYVVSLWRRISTVTGDLR 777 (850)
Q Consensus 708 q~Daa~RN~Ilt~L~~Si~~vnsai~~L~~~~t~~k~f~~~----------~s~~~e~~~r~n~v~~lwr~isa~s~~ld 777 (850)
-.|-++|-|+++.=+.+-..+..||. +-.|.+.|... +....|.-.|++.+++++++++.+. .|=
T Consensus 127 ~~e~~rrQy~Ia~P~ATEdeve~aIn----d~nG~qvfsqalL~anr~geAktaL~Evq~Rh~~ikkiEkt~ael~-qLf 201 (280)
T COG5074 127 EKEQARRQYIIAQPEATEDEVEAAIN----DVNGQQVFSQALLNANRRGEAKTALAEVQARHQEIKKIEKTMAELT-QLF 201 (280)
T ss_pred HHHHHHHhhhhcCCccchHHHHHHhc----ccchHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 35788999999988888877777764 33455555432 2334588899999999999999998 453
Q ss_pred hHH
Q 003080 778 YAD 780 (850)
Q Consensus 778 y~~ 780 (850)
.++
T Consensus 202 ndm 204 (280)
T COG5074 202 NDM 204 (280)
T ss_pred HHH
Confidence 333
No 11
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=34.27 E-value=2.3e+02 Score=28.29 Aligned_cols=87 Identities=15% Similarity=0.224 Sum_probs=67.3
Q ss_pred EEEEEEEeccccccCcccCcChhhHHHhhcccCCCCCccEEEEeeecccCCHHHHHHHHHHHHhcccceee--eCceEEE
Q 003080 485 SFQLFFITQEKVRQVKQLPVNLKSLMDGLSSLLLPSQKPVFSQRMLTLSEDPALAMAFSVARRAAAVPMLL--VNGTYRK 562 (850)
Q Consensus 485 ~v~iiiI~d~~~~~~~~~~~D~e~Ik~el~~Lllp~Q~~~F~~~~~sL~e~~~LA~A~s~A~Rs~s~~~~~--~~g~y~~ 562 (850)
-..++++.++..|+++ ..|+--|=.++.+ -+++.+ +....+...+++.+|.-| +..+.|++. .+|++..
T Consensus 35 ~~~vl~~~gdp~r~~E--~~D~avvleELa~-e~~~~~--v~~akVDiD~~~~LA~~f----gV~siPTLl~FkdGk~v~ 105 (132)
T PRK11509 35 PDGVVLLSSDPKRTPE--VSDNPVMIGELLR-EFPDYT--WQVAIADLEQSEAIGDRF----GVFRFPATLVFTGGNYRG 105 (132)
T ss_pred CcEEEEeCCCCCcCCc--cccHHHHHHHHHH-HhcCCc--eEEEEEECCCCHHHHHHc----CCccCCEEEEEECCEEEE
Confidence 3578899999999999 5888888888765 335433 455678999999987765 444666554 5999999
Q ss_pred EEeeeecHHHHHHHHHhc
Q 003080 563 TVRSYVDSAILQYQLQRM 580 (850)
Q Consensus 563 ~~~~YLDSkeL~~~L~~~ 580 (850)
.+.-+.|-.+|..++++.
T Consensus 106 ~i~G~~~k~~l~~~I~~~ 123 (132)
T PRK11509 106 VLNGIHPWAELINLMRGL 123 (132)
T ss_pred EEeCcCCHHHHHHHHHHH
Confidence 998899999999998874
No 12
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=27.97 E-value=34 Score=30.09 Aligned_cols=26 Identities=19% Similarity=0.347 Sum_probs=21.5
Q ss_pred cccccchhHHHHHHHHHhhhcCCCCC
Q 003080 821 FDLTTIPAFLIVLGILYVLLKPRRPK 846 (850)
Q Consensus 821 ~~~~~v~~~~vv~~~l~~~lr~r~~k 846 (850)
..|+++-.++++++++|+++||++.+
T Consensus 11 ~a~~t~~~~l~fiavi~~ayr~~~K~ 36 (60)
T COG4736 11 DAWGTIAFTLFFIAVIYFAYRPGKKG 36 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchh
Confidence 45778888889999999999998753
No 13
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=26.42 E-value=2.9e+02 Score=30.34 Aligned_cols=40 Identities=13% Similarity=0.198 Sum_probs=27.6
Q ss_pred HHHHHHHHHH---HHHHHHHHhhcCCchHHHHHHHHHHHhhhh
Q 003080 754 ELVNKYNYVV---SLWRRISTVTGDLRYADAMRQLYTLEDASK 793 (850)
Q Consensus 754 e~~~r~n~v~---~lwr~isa~s~~ldy~~Al~~l~~LE~~s~ 793 (850)
++.+..+.++ ....++-.+.+..||..|+.++.+.++...
T Consensus 116 ~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~ 158 (291)
T PF10475_consen 116 KLLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLE 158 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 5555555555 455566666667799999999877777543
No 14
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=25.27 E-value=26 Score=34.53 Aligned_cols=20 Identities=10% Similarity=0.157 Sum_probs=9.9
Q ss_pred HHHHHHHHhhhcCCCCCCCC
Q 003080 830 LIVLGILYVLLKPRRPKPKI 849 (850)
Q Consensus 830 ~vv~~~l~~~lr~r~~kpki 849 (850)
+..+.+++|++|+||-|++.
T Consensus 78 Ig~Illi~y~irR~~Kk~~~ 97 (122)
T PF01102_consen 78 IGIILLISYCIRRLRKKSSS 97 (122)
T ss_dssp HHHHHHHHHHHHHHS-----
T ss_pred HHHHHHHHHHHHHHhccCCC
Confidence 33444567888888877764
No 15
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=24.44 E-value=28 Score=38.79 Aligned_cols=23 Identities=39% Similarity=0.522 Sum_probs=17.7
Q ss_pred ccchhHHHHHHHHHhhhcCCCCC
Q 003080 824 TTIPAFLIVLGILYVLLKPRRPK 846 (850)
Q Consensus 824 ~~v~~~~vv~~~l~~~lr~r~~k 846 (850)
.++...+||+.+||.||++||-+
T Consensus 266 lvllil~vvliiLYiWlyrrRK~ 288 (295)
T TIGR01478 266 LVLIILTVVLIILYIWLYRRRKK 288 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 34455788888899999999863
No 16
>PTZ00370 STEVOR; Provisional
Probab=23.81 E-value=30 Score=38.69 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=17.5
Q ss_pred ccchhHHHHHHHHHhhhcCCCCC
Q 003080 824 TTIPAFLIVLGILYVLLKPRRPK 846 (850)
Q Consensus 824 ~~v~~~~vv~~~l~~~lr~r~~k 846 (850)
.++...+||+.+||.||++||-+
T Consensus 262 lvllil~vvliilYiwlyrrRK~ 284 (296)
T PTZ00370 262 LVLLILAVVLIILYIWLYRRRKN 284 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 34455788888899999998863
No 17
>PF03952 Enolase_N: Enolase, N-terminal domain; InterPro: IPR020811 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3OTR_F 3QTP_A 1PDY_A 1PDZ_A 3TQP_B 2PTZ_A 2PTW_A ....
Probab=23.04 E-value=1.5e+02 Score=29.39 Aligned_cols=56 Identities=20% Similarity=0.311 Sum_probs=39.3
Q ss_pred CcccccccCCCcc-cccccccccChHHHHHHHHHHHHhhhhccCCCchhhHHHHHHHhhH
Q 003080 316 EGVRTELSLPNVG-KTIGAVEEISEDEAEDRLQDAIQEKFAVFGDKDHQAIDILLAEIDI 374 (850)
Q Consensus 316 ~Gv~~~~sLP~v~-~~~g~~~~~se~~~~~~lq~~~~~~~~~~~~k~~~a~d~llae~dv 374 (850)
-|..-...|++.+ ++|++-. -.+|-+...+.|...+..+++.+|.++|-+|.|||=
T Consensus 41 tG~~Ea~elrD~~~~~~~gkg---V~~Av~~vn~~i~~~L~g~~~~dQ~~iD~~L~~lDg 97 (132)
T PF03952_consen 41 TGSHEAVELRDGDPERYGGKG---VSKAVENVNEIIAPALIGLDPTDQEEIDQILIELDG 97 (132)
T ss_dssp SSSSS-B---B-STTSGGGTB---HHHHHHHHHHTHHHHHTTSBTT-HHHHHHHHHHHHT
T ss_pred CCccccccccCCCcceecCcc---cchhhhhHHHHHHHHHHhcchhhHHHhCccceeccC
Confidence 3555555666666 6676655 367888888888888889998899999999999883
No 18
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=21.08 E-value=3.7e+02 Score=25.31 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003080 717 IISTLEESIQTVNSAIHLLL 736 (850)
Q Consensus 717 Ilt~L~~Si~~vnsai~~L~ 736 (850)
=|..|+.+++.+|++++.|+
T Consensus 27 E~~~ins~LD~Lns~LD~LE 46 (83)
T PF03670_consen 27 EYAAINSMLDQLNSCLDHLE 46 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999
No 19
>PF14845 Glycohydro_20b2: beta-acetyl hexosaminidase like; PDB: 1O7A_B 2GJX_C 2GK1_D 1NOW_B 1NOU_B 3LMY_B 1NP0_A 3S6T_A 3OZO_A 3NSN_A ....
Probab=20.28 E-value=82 Score=30.03 Aligned_cols=29 Identities=21% Similarity=0.479 Sum_probs=17.1
Q ss_pred hhccCCceEEEEECCCC-----CCCCcccccccCC
Q 003080 139 YLQLENAYNIFILNPKH-----EKRARYGYRRGLS 168 (850)
Q Consensus 139 ~L~L~~sY~i~ilNPk~-----~~~~~YGYR~G~S 168 (850)
.++.++||+|-| +.+. .....||=|+|+-
T Consensus 90 ~~~~DESY~L~v-~s~~~~~~I~A~tv~GalrgLE 123 (128)
T PF14845_consen 90 QLGMDESYSLSV-PSTNGQATITANTVWGALRGLE 123 (128)
T ss_dssp -TT----EEEEE-TSSSEEEEEEESSHHHHHHHHH
T ss_pred CCCCCCCEEEEE-ecCCceEEEEECChhhhhHHHH
Confidence 778889999999 2122 2558999999973
Done!