Query 003080
Match_columns 850
No_of_seqs 69 out of 71
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 12:34:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003080.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003080hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2le2_A P56; UDG inhibition, DN 49.9 7.6 0.00026 31.7 2.0 36 144-179 8-43 (56)
2 2ks1_B Epidermal growth factor 41.3 16 0.00054 29.1 2.6 18 831-848 26-43 (44)
3 2l2t_A Receptor tyrosine-prote 37.6 19 0.00066 28.6 2.5 18 831-848 25-42 (44)
4 2b3g_B Cellular tumor antigen 27.3 29 0.001 24.9 1.8 16 25-40 9-24 (28)
5 3twe_A Alpha4H; unknown functi 23.9 45 0.0015 23.6 2.2 17 393-409 10-26 (27)
6 3gcz_A Polyprotein; flavivirus 16.8 76 0.0026 33.9 3.2 55 389-454 23-78 (282)
7 3evf_A RNA-directed RNA polyme 13.9 73 0.0025 33.9 2.1 68 390-472 7-75 (277)
8 2lxi_A RNA-binding protein 10; 13.4 1.7E+02 0.0059 24.6 4.0 35 13-52 2-36 (91)
9 2v4h_A NF-kappa-B essential mo 13.2 2.7E+02 0.0092 26.1 5.4 41 363-410 62-102 (110)
10 3va9_A Sensor histidine kinase 11.8 8.8E+02 0.03 22.6 9.2 76 728-805 24-101 (164)
No 1
>2le2_A P56; UDG inhibition, DNA mimicry, hydrolas inhibitor; NMR {Bacillus phage PHI29}
Probab=49.87 E-value=7.6 Score=31.68 Aligned_cols=36 Identities=28% Similarity=0.542 Sum_probs=32.4
Q ss_pred CceEEEEECCCCCCCCcccccccCCHHHHHHhhhch
Q 003080 144 NAYNIFILNPKHEKRARYGYRRGLSDSEITFLKENK 179 (850)
Q Consensus 144 ~sY~i~ilNPk~~~~~~YGYR~G~S~~E~~~l~~n~ 179 (850)
+||++-.|=-..++...|-|-.|+|-|..+.||+|.
T Consensus 8 dsy~~t~ll~dddg~q~~e~h~glslsdfev~ygn~ 43 (56)
T 2le2_A 8 DSYDVTMLLQDDDGKQYYEYHKGLSLSDFEVLYGNT 43 (56)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEEECHHHHHHHHHHS
T ss_pred cceeEEEEEEcCCCceeeeeecCcccccEEEEeCCC
Confidence 899998887777777899999999999999999985
No 2
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=41.30 E-value=16 Score=29.07 Aligned_cols=18 Identities=17% Similarity=0.130 Sum_probs=12.1
Q ss_pred HHHHHHHhhhcCCCCCCC
Q 003080 831 IVLGILYVLLKPRRPKPK 848 (850)
Q Consensus 831 vv~~~l~~~lr~r~~kpk 848 (850)
+++++.|+++|.||-|-|
T Consensus 26 ii~~~~~~~~RRr~~~~k 43 (44)
T 2ks1_B 26 VVALGIGLFMRRRHIVRK 43 (44)
T ss_dssp HHHHHHHHHHHTTTCCSC
T ss_pred HHHHHHHHHhhhhHhhcc
Confidence 344446788888887766
No 3
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=37.62 E-value=19 Score=28.64 Aligned_cols=18 Identities=28% Similarity=0.196 Sum_probs=11.8
Q ss_pred HHHHHHHhhhcCCCCCCC
Q 003080 831 IVLGILYVLLKPRRPKPK 848 (850)
Q Consensus 831 vv~~~l~~~lr~r~~kpk 848 (850)
+++++.|+++|.||-|-|
T Consensus 25 ii~~~~~~~~RRRr~~~k 42 (44)
T 2l2t_A 25 IVGLTFAVYVRRKSIKKK 42 (44)
T ss_dssp HHHHHHHHHHHTTCSSCC
T ss_pred HHHHHHHHHhhhhhhhhc
Confidence 444446788888877655
No 4
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=27.32 E-value=29 Score=24.86 Aligned_cols=16 Identities=44% Similarity=1.132 Sum_probs=13.7
Q ss_pred cccccChhHHHHHHhh
Q 003080 25 QDFQLHPDELERWFLK 40 (850)
Q Consensus 25 ~~~~l~~~el~~WF~~ 40 (850)
.++-|++++++.||+.
T Consensus 9 ddlmlspddi~qw~s~ 24 (28)
T 2b3g_B 9 DDLMLSPDDIEQWFTE 24 (28)
T ss_dssp GGGGCCHHHHHHHHHC
T ss_pred HhhhcChHHHHHHhhc
Confidence 4678999999999974
No 5
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=23.94 E-value=45 Score=23.59 Aligned_cols=17 Identities=41% Similarity=0.769 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHhhcc
Q 003080 393 CEELDERMQDLKNELQS 409 (850)
Q Consensus 393 C~el~e~~~~lk~~l~~ 409 (850)
-|+|+||.+.|++.|.+
T Consensus 10 ledlqerlrklrkklrs 26 (27)
T 3twe_A 10 LEDLQERLRKLRKKLRS 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 37889999999887754
No 6
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=16.76 E-value=76 Score=33.89 Aligned_cols=55 Identities=15% Similarity=0.147 Sum_probs=45.6
Q ss_pred hhhhhHHHHHHHHHH-HHhhccccCCccchhhHHHHHHHHHhhhcccccCCccccccchhhhHHhHH
Q 003080 389 KLALCEELDERMQDL-KNELQSFEGEEYDENHKRKAIEALRRMENWNLFSDTHEEFQNYTVARDTFL 454 (850)
Q Consensus 389 ~~~lC~el~e~~~~l-k~~l~~~~~~~~~~~~~~~a~~~l~r~e~w~lfg~~~e~~~n~~~a~d~Fl 454 (850)
-.-|=+-||++++.| |.++..|+..++-|-.++.|-++|++=+.- .+| +||.+|.
T Consensus 23 ~~tlg~~wk~~ln~l~k~~f~~y~~~~i~e~~r~~ar~~l~~~~~~----------g~Y-rSRAAfK 78 (282)
T 3gcz_A 23 GMTPGEAWKKQLNKLGKTQFEQYKRSCILEVDRTHARDSLENGIQN----------GIA-VSRGSAK 78 (282)
T ss_dssp -CCHHHHHHHHHHHCCHHHHHHHHTTTCEEECCHHHHHHHHHTCCS----------SBC-SSTHHHH
T ss_pred CCcHHHHHHHHHHhhhHHHHHhhhhhceeeccHHHHHHHHhcCCcC----------CCE-ecHHHHH
Confidence 455788999999999 999999999999999999999999886431 444 5888874
No 7
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=13.87 E-value=73 Score=33.92 Aligned_cols=68 Identities=16% Similarity=0.073 Sum_probs=51.3
Q ss_pred hhhhHHHHHHHHHH-HHhhccccCCccchhhHHHHHHHHHhhhcccccCCccccccchhhhHHhHHHHHHHHHHhhhchh
Q 003080 390 LALCEELDERMQDL-KNELQSFEGEEYDENHKRKAIEALRRMENWNLFSDTHEEFQNYTVARDTFLAHLGATLWGSMRHV 468 (850)
Q Consensus 390 ~~lC~el~e~~~~l-k~~l~~~~~~~~~~~~~~~a~~~l~r~e~w~lfg~~~e~~~n~~~a~d~Fla~LaSll~sa~rhL 468 (850)
.-|=+-||++++.| |.++..|+..++-|-.++.|-++|++=+. .-++| .||.+| .|--+.-. ++
T Consensus 7 ~tlg~~wk~~ln~l~k~~f~~y~~~~i~e~~r~~ar~~l~~~~~---------~~~~Y-rSRaA~--KL~ei~ek---~~ 71 (277)
T 3evf_A 7 KTLGEVWKRELNLLDKRQFELYKRTDIVEVDRDTARRHLAEGKV---------DTGVA-VSRGTA--KLRWFHER---GY 71 (277)
T ss_dssp CCHHHHHHHHHHHSCHHHHHHHHTSSEEEECCHHHHHHHHTTCC---------SSCBC-SSTHHH--HHHHHHHT---TS
T ss_pred ccHHHHHHHHHHhhhHHHHHhhhhhccccccHHHHHHHHhcCCc---------cCCCc-cccHHH--HHHHHHHh---CC
Confidence 34678899999999 99999999999999999999999988543 12445 688887 34444443 45
Q ss_pred cccc
Q 003080 469 ISPS 472 (850)
Q Consensus 469 IAP~ 472 (850)
+-|.
T Consensus 72 l~~~ 75 (277)
T 3evf_A 72 VKLE 75 (277)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 5443
No 8
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=13.41 E-value=1.7e+02 Score=24.59 Aligned_cols=35 Identities=9% Similarity=0.051 Sum_probs=27.7
Q ss_pred eEEEEeeccCCCcccccChhHHHHHHhhhhccccccccCC
Q 003080 13 NFIFIGFEGNGNQDFQLHPDELERWFLKIDHIFEHTRVPP 52 (850)
Q Consensus 13 nfifiGF~G~Gn~~~~l~~~el~~WF~~idH~~~htrip~ 52 (850)
|.|||| |.....++++|.+.|+..--.+.+++|++
T Consensus 2 ~~i~v~-----nLp~~~te~~l~~~F~~~G~~v~~v~i~~ 36 (91)
T 2lxi_A 2 NIVMLR-----MLPQAATEDDIRGQLQSHGVQAREVRLMR 36 (91)
T ss_dssp CEEEEE-----TCCSSCCHHHHHHHHHHHTCCCSBCCSSS
T ss_pred CEEEEe-----CCCCCCCHHHHHHHHHHhCCEeEEEEEEe
Confidence 667774 89999999999999998764456677753
No 9
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=13.19 E-value=2.7e+02 Score=26.09 Aligned_cols=41 Identities=27% Similarity=0.368 Sum_probs=24.3
Q ss_pred hhHHHHHHHhhHHHHHHhhccCccchhhhhhHHHHHHHHHHHHhhccc
Q 003080 363 QAIDILLAEIDIYELFAFKHCKGRKVKLALCEELDERMQDLKNELQSF 410 (850)
Q Consensus 363 ~a~d~llae~dvye~fa~khc~~r~~~~~lC~el~e~~~~lk~~l~~~ 410 (850)
..|.+|.|.+|||..=-. ..| +-=|.+.+++.+|+.+|..+
T Consensus 62 E~I~vLkaQv~IY~~DF~---aER----adREkl~~eKe~L~~ql~~L 102 (110)
T 2v4h_A 62 ETVPVLKAQADIYKADFQ---AER----HAREKLVEKKEYLQEQLEQL 102 (110)
T ss_dssp THHHHHHHHHHHHHHHHH---HHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc---cch----hhHHHHHhHHHHHHHHHHHH
Confidence 358899999999975211 122 22345555666666555543
No 10
>3va9_A Sensor histidine kinase; four-alpha-helix bundle, histidine kinase family 9, phosphotransfer, transferase two-component system; 2.30A {Rhodopseudomonas palustris}
Probab=11.81 E-value=8.8e+02 Score=22.57 Aligned_cols=76 Identities=16% Similarity=0.194 Sum_probs=37.9
Q ss_pred HHHHHHHHHhccchhHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHhhcCC-chHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 003080 728 VNSAIHLLLMERTTEKTFKLFQSQERELVNKYNYVV-SLWRRISTVTGDL-RYADAMRQLYTLEDASKGFVDQVNATIAL 805 (850)
Q Consensus 728 vnsai~~L~~~~t~~k~f~~~~s~~~e~~~r~n~v~-~lwr~isa~s~~l-dy~~Al~~l~~LE~~s~~~~~~a~~~~~a 805 (850)
++.....+.+..|+.++|.+..+ .+++..|+.-+ .+...+..+..-. |...-...+..|+............++..
T Consensus 24 ~~~l~~~l~d~Etg~RGYlLTgd--~~fL~pY~~a~~~~~~~l~~L~~l~~dnp~Q~~~l~~l~~~~~~~~~~~~~~i~l 101 (164)
T 3va9_A 24 ISAIQQAVLEAETSERGFLLTGI--ETYRDSYIRARDALAARLDGLRAVLADNPEQIAHIDELRLLTDMRMAQLGRVVEL 101 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhhhcCC--HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555666666655432 25666666443 3444444443211 44444555555666666655555444443
Done!