Query 003080
Match_columns 850
No_of_seqs 69 out of 71
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 12:34:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003080.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/003080hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hoxa1 c.67.1.1 (A:1-425) All 23.6 31 0.0022 35.5 4.7 62 88-157 126-209 (425)
2 d2outa2 d.344.1.1 (A:4-70) Mu- 20.8 28 0.002 27.4 2.7 35 143-182 2-49 (67)
3 d2fjla1 b.55.1.1 (A:1-37,A:87- 12.8 62 0.0045 25.3 3.1 28 17-44 67-97 (101)
4 d1bupa2 c.55.1.1 (A:189-381) H 12.4 1.9E+02 0.014 25.3 6.8 34 508-549 157-190 (193)
5 d1c7na_ c.67.1.3 (A:) Cystalys 11.9 1.6E+02 0.012 28.4 6.6 77 88-177 92-191 (394)
6 d2gena2 a.121.1.1 (A:76-193) P 10.9 2.9E+02 0.021 21.6 6.9 32 428-466 85-116 (118)
7 d1iruj_ d.153.1.4 (J:) Proteas 9.9 1.8E+02 0.013 25.7 5.8 115 219-352 54-172 (204)
8 d2cqca1 d.58.7.1 (A:109-191) A 9.6 79 0.0058 24.3 2.6 29 9-42 6-34 (83)
9 d1unqa_ b.55.1.1 (A:) Rac-alph 9.4 59 0.0043 25.7 1.8 37 10-46 70-109 (118)
10 d1l3ka2 d.58.7.1 (A:103-181) N 8.9 95 0.0069 23.4 2.8 26 14-44 4-29 (79)
No 1
>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}
Probab=23.58 E-value=31 Score=35.48 Aligned_cols=62 Identities=15% Similarity=0.222 Sum_probs=44.0
Q ss_pred EecChhhHHHHHHHHHHhcccCCCC-----------CC-----------CCCCcceeeecccchHHHHHHhhhhhccCCc
Q 003080 88 IQMGEKVTSVFEHAIKVLARKDDVS-----------TN-----------RDDVDALWQVDVSMMDVLFTSLVDYLQLENA 145 (850)
Q Consensus 88 i~~~~~V~~~fE~AI~~~~R~~d~~-----------~~-----------~~~~~~~~qvd~~~m~~l~~slv~~L~L~~s 145 (850)
|-+|.+.++++.-||..|+.+.+.. .| -+..+..|+.|++.+....+ ++.
T Consensus 126 IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~~~~~~~~~~D~~~~~~~~~--------~~~ 197 (425)
T d2hoxa1 126 IVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWAGNAANYVNVSN--------PEQ 197 (425)
T ss_dssp EEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEEEEEEGGGGTTCSC--------GGG
T ss_pred EEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHHHHHcCCCCCccCCCHHHHHhhCC--------CCc
Confidence 6789999999999999998654321 11 22245679999886533211 378
Q ss_pred eEEEEECCCCCC
Q 003080 146 YNIFILNPKHEK 157 (850)
Q Consensus 146 Y~i~ilNPk~~~ 157 (850)
+-++|-|||+.+
T Consensus 198 ~ii~l~sPnNPt 209 (425)
T d2hoxa1 198 YIEMVTSPNNPE 209 (425)
T ss_dssp EEEEEESSCTTT
T ss_pred eEEEEECCCCCC
Confidence 889999999943
No 2
>d2outa2 d.344.1.1 (A:4-70) Mu-like prophage FluMu protein gp35, HI1506 {Haemophilus influenzae [TaxId: 727]}
Probab=20.81 E-value=28 Score=27.43 Aligned_cols=35 Identities=34% Similarity=0.694 Sum_probs=24.6
Q ss_pred CCceEEEEECCCCCCCCcccccc-cC------------CHHHHHHhhhchHHh
Q 003080 143 ENAYNIFILNPKHEKRARYGYRR-GL------------SDSEITFLKENKDLQ 182 (850)
Q Consensus 143 ~~sY~i~ilNPk~~~~~~YGYR~-G~------------S~~E~~~l~~n~~l~ 182 (850)
++-|-++|-| +.+=|||+ || |++.|++||...-|-
T Consensus 2 dk~~~VvVqN-----riKdGYRRAGfSlhkGdN~l~~vse~QiaqLKaDpRLV 49 (67)
T d2outa2 2 DKTFCVVVQN-----RIKEGYRRAGFSFHLGDNSLAAVSESQLAQLKADPRLV 49 (67)
T ss_dssp SCCBCEEEEC-----CSCSCCCCSSSCCCSSEEECCCBSSHHHHHHHSSTTSC
T ss_pred CceEEEEEEe-----ecchhhhhcCeeeeeCchHhhhccHHHHHHhcCCCeEE
Confidence 5778899988 35678873 44 577777777766553
No 3
>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=12.81 E-value=62 Score=25.32 Aligned_cols=28 Identities=21% Similarity=0.493 Sum_probs=22.1
Q ss_pred EeeccCCCccccc---ChhHHHHHHhhhhcc
Q 003080 17 IGFEGNGNQDFQL---HPDELERWFLKIDHI 44 (850)
Q Consensus 17 iGF~G~Gn~~~~l---~~~el~~WF~~idH~ 44 (850)
|-..+.|++-+-| +++|+++|++.|-.+
T Consensus 67 i~~~~~~~~~~~~~a~s~~e~~~Wi~ai~~~ 97 (101)
T d2fjla1 67 ISMPSVAQWSLDVAADSQEELQDWVKKIREV 97 (101)
T ss_dssp EECTTTSSCCEEEEESSHHHHHHHHHHHHHH
T ss_pred EeccccccEEEEEEeCCHHHHHHHHHHHHHH
Confidence 5566667777777 999999999998654
No 4
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}
Probab=12.44 E-value=1.9e+02 Score=25.31 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=21.7
Q ss_pred hHHHhhcccCCCCCccEEEEeeecccCCHHHHHHHHHHHHhc
Q 003080 508 SLMDGLSSLLLPSQKPVFSQRMLTLSEDPALAMAFSVARRAA 549 (850)
Q Consensus 508 ~Ik~el~~Lllp~Q~~~F~~~~~sL~e~~~LA~A~s~A~Rs~ 549 (850)
.+++.+++ .++++++ .-..+|..|.|.=.|+.++
T Consensus 157 ~v~~~i~~-~f~~~~i-------~~~~~p~~aVa~GaA~~aa 190 (193)
T d1bupa2 157 KIQKLLQD-FFNGKEL-------NKSINPDEAVAYGAAVQAA 190 (193)
T ss_dssp HHHHHHHH-HTTTCCC-------BCSSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHH-HcCCCCC-------CCCCChHHHHHHHHHHHHH
Confidence 47777776 4565543 3345787777777777654
No 5
>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}
Probab=11.89 E-value=1.6e+02 Score=28.36 Aligned_cols=77 Identities=14% Similarity=0.201 Sum_probs=53.8
Q ss_pred EecChhhHHHHHHHHHHhcccCCCC-----------------------CCCCCCcceeeecccchHHHHHHhhhhhccCC
Q 003080 88 IQMGEKVTSVFEHAIKVLARKDDVS-----------------------TNRDDVDALWQVDVSMMDVLFTSLVDYLQLEN 144 (850)
Q Consensus 88 i~~~~~V~~~fE~AI~~~~R~~d~~-----------------------~~~~~~~~~~qvd~~~m~~l~~slv~~L~L~~ 144 (850)
|-++.+.++.+.-|+..+.++.|.. .+....+..|+.|...++.+.. -.+
T Consensus 92 I~vt~G~~~al~~~~~~~~~pgd~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~-------~~~ 164 (394)
T d1c7na_ 92 IINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSK-------DKN 164 (394)
T ss_dssp EEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHT-------CTT
T ss_pred eEeeccchhhhhhhhccccccccccccccCcccchhhHHhhhhhcccccccccccccccchhhhhhhhhc-------ccc
Confidence 5567889999999999999998822 1123356678888877766542 124
Q ss_pred ceEEEEECCCCCCCCcccccccCCHHHHHHhhh
Q 003080 145 AYNIFILNPKHEKRARYGYRRGLSDSEITFLKE 177 (850)
Q Consensus 145 sY~i~ilNPk~~~~~~YGYR~G~S~~E~~~l~~ 177 (850)
.=-|+|-||++.+... +|.+|++.|-+
T Consensus 165 ~~~i~l~~P~NPTG~v------~s~~~l~~l~~ 191 (394)
T d1c7na_ 165 NKALLFCSPHNPVGRV------WKKDELQKIKD 191 (394)
T ss_dssp EEEEEEESSBTTTTBC------CCHHHHHHHHH
T ss_pred ceEEEeccccccccee------ccHHHhhhhhc
Confidence 4567888998866454 58888887754
No 6
>d2gena2 a.121.1.1 (A:76-193) Probable transcriptional regulator PA1836 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=10.87 E-value=2.9e+02 Score=21.63 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=25.1
Q ss_pred HhhhcccccCCccccccchhhhHHhHHHHHHHHHHhhhc
Q 003080 428 RRMENWNLFSDTHEEFQNYTVARDTFLAHLGATLWGSMR 466 (850)
Q Consensus 428 ~r~e~w~lfg~~~e~~~n~~~a~d~Fla~LaSll~sa~r 466 (850)
..+-.|-+.|+.+ ...+.....|.-++|.++|
T Consensus 85 ~~~~~~wl~~~~~-------~~~e~~~e~l~~~~w~~lr 116 (118)
T d2gena2 85 HDLARQWLAGRTR-------VALADCRELLAQVAWDSVR 116 (118)
T ss_dssp HHHHHHHHTTCCS-------SCGGGGHHHHHHHHHHHHB
T ss_pred HHHHHHHHcCCCC-------CCHHHHHHHHHHHHHHHHh
Confidence 6677777777665 3577888999999999987
No 7
>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.91 E-value=1.8e+02 Score=25.74 Aligned_cols=115 Identities=13% Similarity=0.005 Sum_probs=68.8
Q ss_pred CCCcchhHHHHHHhccccchhhhhcCCCchhhHHHHHHHHhcCCchhHHHHHHHhhhcCCCCCccccccccccccc--c-
Q 003080 219 AEDTDTAEWYNICLDPLNNVEKFYRGKETADIIQSKVLQLLKGKNEDLKFLLEKELKSGDLSNLHAECLTDSWIGN--N- 295 (850)
Q Consensus 219 ~~~~~~~~W~~~~~~~~~~~e~~~~~k~~~~~~~~~a~~~L~g~~~~~~~~l~~~l~~~d~~~~~~~Cl~d~Wig~--~- 295 (850)
+..-|.-.|.+.....++..+..+...-+.+ .+..+|...+......+....|++=-|-.. +
T Consensus 54 G~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~---------------~~a~~l~~~~~~~~~~p~~~~~lvaG~D~~~~~~ 118 (204)
T d1iruj_ 54 GLATDVQTVAQRLKFRLNLYELKEGRQIKPY---------------TLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKP 118 (204)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHSSSCCCHH---------------HHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCE
T ss_pred cCchHHHHHHHHHHHhhhhhhhhcccccchH---------------HHHHHHHHHHHHhhhccceeEEEEEEEcCCCCce
Confidence 3344677777766655555554443322322 223444445555556778888888777432 2
Q ss_pred ceEEEEcCCCCCcccc-cccCCcccccccCCCcccccccccccChHHHHHHHHHHHHh
Q 003080 296 RWAFIDLTAGPFSWGP-AVGGEGVRTELSLPNVGKTIGAVEEISEDEAEDRLQDAIQE 352 (850)
Q Consensus 296 R~afiDLtAGPf~wGP-avGG~Gv~~~~sLP~v~~~~g~~~~~se~~~~~~lq~~~~~ 352 (850)
.+..+|-+.|.+.|.+ +.+|.|-... +|-.++.+- ..+|.|||.+-.-+++..
T Consensus 119 ~~~~~d~~g~~~~~~~~~~~G~g~~~~--~~~l~~~~~--~~ms~~ea~~l~~~al~~ 172 (204)
T d1iruj_ 119 FICSLDLIGCPMVTDDFVVSGTCAEQM--YGMCESLWE--PNMDPDHLFETISQAMLN 172 (204)
T ss_dssp EEEEECTTCCEEECSSEEEEETTHHHH--HHHHHHHCC--SSCCHHHHHHHHHHHHHH
T ss_pred EEEEecCCCceeeecceEEechhHHHH--HHHHHhccc--cCCCHHHHHHHHHHHHHH
Confidence 4577899999999998 8888884422 222332222 246888888776666644
No 8
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.61 E-value=79 Score=24.29 Aligned_cols=29 Identities=17% Similarity=0.147 Sum_probs=24.5
Q ss_pred ccceeEEEEeeccCCCcccccChhHHHHHHhhhh
Q 003080 9 PVPVNFIFIGFEGNGNQDFQLHPDELERWFLKID 42 (850)
Q Consensus 9 piPvnfifiGF~G~Gn~~~~l~~~el~~WF~~id 42 (850)
|-|-+.|||| |.....++++|.+.|++.-
T Consensus 6 p~~~~~l~V~-----nL~~~~te~~l~~~F~~~G 34 (83)
T d2cqca1 6 PDPNCCLGVF-----GLSLYTTERDLREVFSKYG 34 (83)
T ss_dssp CCGGGCEEEE-----SCCSSCCHHHHHHHHHTTS
T ss_pred CCCCCEEEEe-----CCCCCCCHHHHHHHHHHhC
Confidence 5566778885 8999999999999998764
No 9
>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.41 E-value=59 Score=25.69 Aligned_cols=37 Identities=22% Similarity=0.378 Sum_probs=25.3
Q ss_pred cceeEEEEeeccCCCccccc---ChhHHHHHHhhhhcccc
Q 003080 10 VPVNFIFIGFEGNGNQDFQL---HPDELERWFLKIDHIFE 46 (850)
Q Consensus 10 iPvnfifiGF~G~Gn~~~~l---~~~el~~WF~~idH~~~ 46 (850)
-|--|.+..+.+.....+-+ +++|+.+|++.|-++..
T Consensus 70 ~~~~f~i~~~~~~~~~~~~f~a~s~~e~~~Wi~ai~~~~~ 109 (118)
T d1unqa_ 70 RPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVAD 109 (118)
T ss_dssp STTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEeccccceeEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 34456666666655444333 89999999999988753
No 10
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.90 E-value=95 Score=23.43 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=21.1
Q ss_pred EEEEeeccCCCcccccChhHHHHHHhhhhcc
Q 003080 14 FIFIGFEGNGNQDFQLHPDELERWFLKIDHI 44 (850)
Q Consensus 14 fifiGF~G~Gn~~~~l~~~el~~WF~~idH~ 44 (850)
=|||| |..++.++++|.++|+..-.+
T Consensus 4 ~lfV~-----nLp~~~te~~l~~~F~~~G~i 29 (79)
T d1l3ka2 4 KIFVG-----GIKEDTEEHHLRDYFEQYGKI 29 (79)
T ss_dssp EEEEE-----CCTTTCCHHHHHHHHTTTSCE
T ss_pred EEEEC-----CCCCcCCHHHHHHHHHHhccc
Confidence 35665 999999999999999976443
Done!