Query 003081
Match_columns 850
No_of_seqs 378 out of 1179
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 16:39:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003081.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003081hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0915 Uncharacterized conser 100.0 5E-123 1E-127 1083.5 73.2 796 1-844 885-1690(1702)
2 KOG2023 Nuclear transport rece 100.0 2.6E-31 5.6E-36 291.8 35.6 613 3-653 50-797 (885)
3 KOG2171 Karyopherin (importin) 100.0 3.4E-29 7.3E-34 293.2 54.3 595 36-637 305-1004(1075)
4 KOG1241 Karyopherin (importin) 100.0 8.8E-25 1.9E-29 244.8 44.7 491 92-653 234-835 (859)
5 KOG1241 Karyopherin (importin) 99.9 3.1E-23 6.8E-28 232.4 37.9 430 56-556 343-819 (859)
6 KOG2171 Karyopherin (importin) 99.9 3.6E-21 7.7E-26 226.3 54.0 496 113-636 115-715 (1075)
7 KOG2023 Nuclear transport rece 99.9 1.6E-20 3.4E-25 207.4 36.7 497 79-641 220-824 (885)
8 COG5215 KAP95 Karyopherin (imp 99.9 9.5E-20 2.1E-24 198.0 41.6 524 42-640 178-815 (858)
9 KOG1824 TATA-binding protein-i 99.9 2E-17 4.3E-22 188.9 46.1 300 354-654 128-487 (1233)
10 COG5215 KAP95 Karyopherin (imp 99.8 4.4E-18 9.6E-23 185.2 34.7 432 56-558 345-820 (858)
11 KOG1824 TATA-binding protein-i 99.8 4.9E-16 1.1E-20 177.7 48.9 507 58-637 2-552 (1233)
12 KOG1242 Protein containing ada 99.7 3.7E-16 8E-21 174.9 24.1 360 89-538 189-554 (569)
13 KOG0213 Splicing factor 3b, su 99.7 4.7E-12 1E-16 142.1 47.4 591 58-742 495-1110(1172)
14 KOG1242 Protein containing ada 99.7 3.4E-13 7.5E-18 151.3 36.0 485 125-654 26-546 (569)
15 KOG0213 Splicing factor 3b, su 99.6 1.3E-10 2.7E-15 130.8 49.6 675 56-841 380-1107(1172)
16 KOG0915 Uncharacterized conser 99.6 1.1E-11 2.4E-16 149.0 41.0 354 170-565 970-1361(1702)
17 PLN03200 cellulose synthase-in 99.5 1.8E-10 4E-15 146.8 48.6 537 75-654 190-791 (2102)
18 COG5181 HSH155 U2 snRNP splice 99.5 3.8E-10 8.2E-15 124.9 39.7 590 60-743 302-916 (975)
19 KOG0211 Protein phosphatase 2A 99.5 1.4E-10 2.9E-15 137.1 37.2 447 59-549 179-665 (759)
20 PLN03200 cellulose synthase-in 99.5 3.5E-09 7.6E-14 135.3 49.7 583 73-740 98-724 (2102)
21 KOG0212 Uncharacterized conser 99.4 3.9E-11 8.6E-16 132.0 27.5 422 88-550 13-446 (675)
22 KOG0212 Uncharacterized conser 99.4 4.8E-10 1E-14 123.6 32.4 390 161-590 4-407 (675)
23 PF01602 Adaptin_N: Adaptin N 99.3 2.4E-08 5.2E-13 117.9 44.6 466 115-632 41-522 (526)
24 COG5181 HSH155 U2 snRNP splice 99.2 1.3E-07 2.7E-12 105.4 39.3 669 57-842 186-913 (975)
25 PF01602 Adaptin_N: Adaptin N 99.2 4.6E-07 1E-11 107.0 47.5 418 131-638 22-448 (526)
26 PTZ00429 beta-adaptin; Provisi 99.1 3.6E-06 7.7E-11 101.2 46.4 419 130-637 47-474 (746)
27 KOG1943 Beta-tubulin folding c 99.1 2.7E-05 5.9E-10 92.8 50.7 597 151-824 335-987 (1133)
28 KOG0211 Protein phosphatase 2A 99.1 5E-07 1.1E-11 107.3 35.7 539 114-742 119-667 (759)
29 PTZ00429 beta-adaptin; Provisi 99.0 3.6E-06 7.9E-11 101.1 42.4 428 116-633 105-544 (746)
30 KOG1943 Beta-tubulin folding c 99.0 0.0002 4.3E-09 85.7 52.4 658 57-801 104-841 (1133)
31 PF12755 Vac14_Fab1_bd: Vacuol 99.0 3.6E-09 7.9E-14 94.2 10.4 73 149-222 19-91 (97)
32 PRK13800 putative oxidoreducta 98.9 2.4E-07 5.3E-12 115.5 26.3 273 158-585 622-895 (897)
33 PRK13800 putative oxidoreducta 98.9 2.9E-07 6.2E-12 114.9 26.8 266 260-631 630-896 (897)
34 PRK09687 putative lyase; Provi 98.9 3.2E-07 7E-12 98.6 23.4 241 88-424 36-277 (280)
35 PF12755 Vac14_Fab1_bd: Vacuol 98.8 2.8E-08 6E-13 88.6 9.3 90 90-179 1-90 (97)
36 KOG1060 Vesicle coat complex A 98.8 1.1E-05 2.4E-10 92.9 32.3 389 116-571 39-440 (968)
37 KOG0166 Karyopherin (importin) 98.8 1.7E-06 3.6E-11 97.7 24.6 298 64-437 92-401 (514)
38 KOG1248 Uncharacterized conser 98.7 0.0006 1.3E-08 82.7 46.4 522 76-639 355-903 (1176)
39 PRK09687 putative lyase; Provi 98.7 1.1E-06 2.3E-11 94.6 19.5 193 400-631 24-218 (280)
40 PF10508 Proteasom_PSMB: Prote 98.6 0.00029 6.3E-09 82.4 38.2 393 97-588 60-461 (503)
41 PF12460 MMS19_C: RNAPII trans 98.6 0.00027 5.9E-09 80.8 36.0 386 118-567 1-413 (415)
42 KOG0166 Karyopherin (importin) 98.5 0.00011 2.5E-09 83.1 31.1 319 247-590 106-437 (514)
43 PF12348 CLASP_N: CLASP N term 98.5 2.6E-06 5.7E-11 89.1 15.4 182 450-638 20-210 (228)
44 PF10508 Proteasom_PSMB: Prote 98.5 0.00014 2.9E-09 85.2 30.6 292 341-638 60-370 (503)
45 PF12348 CLASP_N: CLASP N term 98.5 3.7E-06 8E-11 88.0 15.9 190 83-284 15-210 (228)
46 KOG1991 Nuclear transport rece 98.4 0.012 2.7E-07 70.4 49.0 346 244-628 404-794 (1010)
47 PF12460 MMS19_C: RNAPII trans 98.4 0.00085 1.8E-08 76.8 34.5 337 246-612 34-413 (415)
48 KOG1240 Protein kinase contain 98.4 1.4E-05 3.1E-10 95.7 19.7 287 343-654 447-745 (1431)
49 KOG1248 Uncharacterized conser 98.3 0.023 4.9E-07 69.6 57.8 335 390-766 509-876 (1176)
50 KOG2032 Uncharacterized conser 98.3 0.0001 2.2E-09 81.6 20.9 198 62-268 199-404 (533)
51 KOG1020 Sister chromatid cohes 98.2 0.018 3.9E-07 71.7 40.7 459 107-638 765-1258(1692)
52 KOG1060 Vesicle coat complex A 98.1 0.017 3.6E-07 67.6 35.1 411 118-588 110-532 (968)
53 KOG0392 SNF2 family DNA-depend 98.1 0.055 1.2E-06 66.4 39.6 132 88-223 90-232 (1549)
54 cd00020 ARM Armadillo/beta-cat 98.0 3.1E-05 6.7E-10 71.5 9.9 112 74-186 7-120 (120)
55 KOG0946 ER-Golgi vesicle-tethe 98.0 0.067 1.4E-06 62.8 42.4 201 74-281 22-242 (970)
56 KOG1062 Vesicle coat complex A 98.0 0.014 3E-07 68.5 32.4 385 160-636 110-497 (866)
57 COG5240 SEC21 Vesicle coat com 98.0 0.061 1.3E-06 60.9 39.2 256 348-631 294-552 (898)
58 cd00020 ARM Armadillo/beta-cat 98.0 5.9E-05 1.3E-09 69.6 10.5 110 117-226 8-118 (120)
59 KOG2274 Predicted importin 9 [ 97.9 0.1 2.2E-06 62.3 41.9 251 372-630 505-776 (1005)
60 KOG1020 Sister chromatid cohes 97.9 0.15 3.2E-06 64.1 45.2 147 108-278 812-958 (1692)
61 KOG1992 Nuclear export recepto 97.9 0.012 2.7E-07 69.0 29.9 369 133-574 379-778 (960)
62 COG5064 SRP1 Karyopherin (impo 97.9 0.00058 1.3E-08 72.1 17.2 292 58-385 91-396 (526)
63 KOG1240 Protein kinase contain 97.9 0.00084 1.8E-08 81.1 20.5 253 356-636 421-687 (1431)
64 PF13513 HEAT_EZ: HEAT-like re 97.8 3.5E-05 7.7E-10 61.2 5.9 50 171-221 1-50 (55)
65 KOG1992 Nuclear export recepto 97.8 0.16 3.5E-06 60.0 39.3 447 73-569 36-557 (960)
66 PF13513 HEAT_EZ: HEAT-like re 97.7 2.3E-05 5E-10 62.2 2.9 54 89-142 1-54 (55)
67 KOG1059 Vesicle coat complex A 97.7 0.19 4.2E-06 58.6 36.3 314 199-551 144-493 (877)
68 KOG1059 Vesicle coat complex A 97.7 0.13 2.8E-06 60.0 32.6 237 74-369 144-383 (877)
69 KOG0891 DNA-dependent protein 97.6 0.47 1E-05 63.7 41.5 123 507-631 636-760 (2341)
70 KOG1967 DNA repair/transcripti 97.6 0.00032 6.8E-09 82.7 11.6 129 94-222 886-1018(1030)
71 KOG4224 Armadillo repeat prote 97.6 0.0079 1.7E-07 64.4 20.8 407 89-552 61-497 (550)
72 KOG4224 Armadillo repeat prote 97.6 0.011 2.5E-07 63.2 21.3 355 152-549 80-447 (550)
73 KOG2259 Uncharacterized conser 97.5 0.01 2.2E-07 68.0 20.8 314 158-552 199-515 (823)
74 KOG1058 Vesicle coat complex C 97.5 0.067 1.4E-06 62.5 27.1 344 208-637 108-466 (948)
75 PF13646 HEAT_2: HEAT repeats; 97.5 0.00044 9.6E-09 60.4 7.9 84 118-222 1-86 (88)
76 KOG2956 CLIP-associating prote 97.4 0.0054 1.2E-07 67.9 17.2 195 359-561 288-491 (516)
77 KOG1061 Vesicle coat complex A 97.4 0.13 2.7E-06 60.8 28.3 126 159-304 88-214 (734)
78 KOG1820 Microtubule-associated 97.3 0.0042 9.2E-08 75.1 16.4 183 86-284 264-447 (815)
79 COG5064 SRP1 Karyopherin (impo 97.3 0.0033 7.2E-08 66.6 13.1 154 116-282 243-400 (526)
80 KOG1991 Nuclear transport rece 97.3 0.78 1.7E-05 55.7 53.7 519 116-653 93-735 (1010)
81 KOG1058 Vesicle coat complex C 97.3 0.32 7E-06 57.1 29.4 74 126-207 109-182 (948)
82 PF02985 HEAT: HEAT repeat; I 97.2 0.00044 9.6E-09 47.9 4.1 30 158-187 1-30 (31)
83 PF12717 Cnd1: non-SMC mitotic 97.2 0.002 4.2E-08 64.8 10.4 109 91-206 4-112 (178)
84 KOG4653 Uncharacterized conser 97.2 0.016 3.6E-07 68.3 19.0 181 371-556 740-926 (982)
85 TIGR02270 conserved hypothetic 97.2 0.098 2.1E-06 59.4 24.5 268 89-466 17-296 (410)
86 KOG2956 CLIP-associating prote 97.2 0.017 3.6E-07 64.2 17.2 210 74-301 286-499 (516)
87 COG5240 SEC21 Vesicle coat com 97.2 0.19 4.2E-06 57.1 25.4 144 43-189 191-335 (898)
88 KOG0413 Uncharacterized conser 97.1 0.19 4.2E-06 60.1 25.8 91 533-635 945-1036(1529)
89 KOG2274 Predicted importin 9 [ 97.1 1.2 2.6E-05 53.6 38.0 334 170-587 423-778 (1005)
90 KOG1820 Microtubule-associated 97.1 0.019 4.2E-07 69.5 18.0 184 450-641 266-450 (815)
91 KOG2259 Uncharacterized conser 97.0 0.26 5.6E-06 57.1 25.4 69 117-185 235-309 (823)
92 KOG2022 Nuclear transport rece 97.0 1.3 2.8E-05 53.2 40.8 154 264-447 480-637 (982)
93 KOG1062 Vesicle coat complex A 97.0 1.2 2.7E-05 52.9 36.6 160 244-431 290-453 (866)
94 PF10274 ParcG: Parkin co-regu 97.0 0.0073 1.6E-07 59.9 11.6 116 477-592 37-167 (183)
95 KOG1525 Sister chromatid cohes 97.0 1.9 4.2E-05 55.0 36.5 353 191-590 44-406 (1266)
96 PF05804 KAP: Kinesin-associat 97.0 0.55 1.2E-05 56.7 29.0 104 116-226 290-397 (708)
97 KOG1061 Vesicle coat complex A 96.9 0.15 3.3E-06 60.1 23.2 406 154-638 46-457 (734)
98 PF13646 HEAT_2: HEAT repeats; 96.9 0.0035 7.6E-08 54.6 7.6 85 522-630 2-88 (88)
99 COG5096 Vesicle coat complex, 96.9 1.7 3.7E-05 52.5 39.3 154 125-309 28-183 (757)
100 PF03378 CAS_CSE1: CAS/CSE pro 96.8 0.3 6.4E-06 56.0 24.2 277 355-635 24-325 (435)
101 COG1413 FOG: HEAT repeat [Ener 96.8 0.24 5.1E-06 55.0 23.2 172 74-306 43-227 (335)
102 COG5218 YCG1 Chromosome conden 96.8 0.59 1.3E-05 53.5 25.2 152 108-275 41-194 (885)
103 PF12717 Cnd1: non-SMC mitotic 96.8 0.068 1.5E-06 53.6 16.6 131 452-589 3-139 (178)
104 KOG0891 DNA-dependent protein 96.7 1.3 2.9E-05 59.7 31.9 468 125-652 538-1022(2341)
105 KOG1967 DNA repair/transcripti 96.6 0.085 1.8E-06 63.0 18.2 176 115-304 814-1007(1030)
106 PF02985 HEAT: HEAT repeat; I 96.6 0.0031 6.8E-08 43.6 4.0 30 520-549 1-30 (31)
107 KOG4535 HEAT and armadillo rep 96.5 2 4.2E-05 48.3 29.0 103 533-637 498-606 (728)
108 KOG4535 HEAT and armadillo rep 96.5 0.94 2E-05 50.8 24.0 278 372-653 269-582 (728)
109 PF10274 ParcG: Parkin co-regu 96.5 0.021 4.6E-07 56.7 10.2 94 517-611 36-130 (183)
110 TIGR02270 conserved hypothetic 96.4 0.18 3.8E-06 57.3 18.7 194 63-303 74-280 (410)
111 KOG1078 Vesicle coat complex C 96.3 3.5 7.5E-05 49.2 36.3 86 123-220 71-156 (865)
112 PF12719 Cnd3: Nuclear condens 96.3 1.1 2.5E-05 48.7 23.7 136 349-486 56-205 (298)
113 PF08167 RIX1: rRNA processing 96.2 0.12 2.7E-06 51.0 14.5 142 154-301 22-164 (165)
114 KOG4653 Uncharacterized conser 96.1 0.54 1.2E-05 56.2 20.7 219 261-549 737-965 (982)
115 PF05004 IFRD: Interferon-rela 96.1 1.2 2.6E-05 48.8 22.6 214 153-432 39-260 (309)
116 KOG2032 Uncharacterized conser 96.0 0.43 9.3E-06 53.7 18.3 138 515-654 254-398 (533)
117 PF04826 Arm_2: Armadillo-like 96.0 0.63 1.4E-05 49.3 19.0 194 74-284 12-209 (254)
118 COG5098 Chromosome condensatio 96.0 4.9 0.00011 47.2 28.1 129 497-637 284-418 (1128)
119 COG5656 SXM1 Importin, protein 95.9 5.5 0.00012 47.3 35.8 126 468-595 631-763 (970)
120 KOG2025 Chromosome condensatio 95.8 0.42 9E-06 55.9 17.4 206 60-276 22-255 (892)
121 KOG1077 Vesicle coat complex A 95.7 4 8.8E-05 48.0 25.1 244 396-650 147-414 (938)
122 PF05004 IFRD: Interferon-rela 95.7 1.1 2.4E-05 49.0 20.4 185 89-283 57-260 (309)
123 PF14500 MMS19_N: Dos2-interac 95.7 1.2 2.6E-05 47.5 20.0 55 514-568 203-258 (262)
124 COG1413 FOG: HEAT repeat [Ener 95.6 2.2 4.7E-05 47.2 22.8 215 357-630 43-269 (335)
125 KOG1993 Nuclear transport rece 95.6 7.5 0.00016 46.5 36.1 181 115-307 487-671 (978)
126 PF03378 CAS_CSE1: CAS/CSE pro 95.4 0.86 1.9E-05 52.3 18.9 237 390-638 17-276 (435)
127 KOG2062 26S proteasome regulat 95.1 0.42 9E-06 56.1 14.8 135 73-222 483-647 (929)
128 PF08506 Cse1: Cse1; InterPro 95.1 7.2 0.00016 43.9 24.5 121 533-653 225-356 (370)
129 KOG0392 SNF2 family DNA-depend 95.1 0.067 1.4E-06 65.7 8.6 124 100-228 801-925 (1549)
130 KOG1077 Vesicle coat complex A 95.0 10 0.00022 44.9 40.5 264 339-630 310-583 (938)
131 PF11865 DUF3385: Domain of un 95.0 0.23 5E-06 48.8 11.0 153 393-589 2-157 (160)
132 KOG0889 Histone acetyltransfer 95.0 2.3 5E-05 58.3 22.8 304 117-447 985-1327(3550)
133 KOG0414 Chromosome condensatio 95.0 0.19 4.1E-06 61.8 12.1 157 113-295 916-1078(1251)
134 PF13251 DUF4042: Domain of un 94.7 0.46 9.9E-06 47.6 12.3 135 92-226 3-172 (182)
135 KOG2933 Uncharacterized conser 94.7 0.42 9E-06 50.9 12.4 168 117-302 75-258 (334)
136 PF08167 RIX1: rRNA processing 94.7 0.58 1.2E-05 46.3 13.0 114 111-226 20-141 (165)
137 KOG2025 Chromosome condensatio 94.7 12 0.00027 44.3 33.0 145 114-275 42-188 (892)
138 KOG2149 Uncharacterized conser 94.6 0.32 7E-06 53.6 11.8 112 113-228 59-170 (393)
139 cd08050 TAF6 TATA Binding Prot 94.4 0.17 3.6E-06 56.3 9.3 101 111-212 205-322 (343)
140 KOG2021 Nuclear mRNA export fa 94.4 15 0.00032 44.0 34.7 314 156-485 439-783 (980)
141 PF13251 DUF4042: Domain of un 94.3 0.55 1.2E-05 47.0 11.8 142 131-282 1-176 (182)
142 COG5116 RPN2 26S proteasome re 94.3 1.1 2.3E-05 51.3 14.8 166 36-224 461-646 (926)
143 KOG1851 Uncharacterized conser 94.2 14 0.0003 47.7 25.3 149 349-501 1518-1672(1710)
144 PF10521 DUF2454: Protein of u 94.2 4.5 9.7E-05 43.8 19.5 149 149-303 111-276 (282)
145 PF11865 DUF3385: Domain of un 94.1 0.76 1.6E-05 45.2 12.2 140 356-503 9-153 (160)
146 PF12719 Cnd3: Nuclear condens 94.1 5.8 0.00012 43.3 20.3 103 116-222 26-137 (298)
147 KOG2149 Uncharacterized conser 94.0 0.49 1.1E-05 52.3 11.6 135 157-302 58-192 (393)
148 KOG2160 Armadillo/beta-catenin 93.9 6.2 0.00013 43.2 19.5 131 85-215 93-225 (342)
149 KOG0168 Putative ubiquitin fus 93.8 20 0.00044 43.4 27.6 185 113-314 168-357 (1051)
150 PLN03076 ARF guanine nucleotid 93.8 34 0.00074 46.0 31.1 267 356-637 1181-1492(1780)
151 PF05918 API5: Apoptosis inhib 92.9 20 0.00044 42.1 22.9 103 372-480 36-140 (556)
152 COG5656 SXM1 Importin, protein 92.8 27 0.00058 41.9 38.2 351 100-481 395-773 (970)
153 KOG2137 Protein kinase [Signal 92.8 4.2 9.1E-05 48.3 17.1 118 152-284 344-462 (700)
154 cd08050 TAF6 TATA Binding Prot 92.4 3.1 6.7E-05 46.3 15.1 86 502-587 241-338 (343)
155 COG5116 RPN2 26S proteasome re 92.1 0.62 1.3E-05 53.1 8.9 129 71-213 548-676 (926)
156 KOG4413 26S proteasome regulat 92.1 20 0.00043 38.7 28.2 73 155-227 80-156 (524)
157 PF05804 KAP: Kinesin-associat 92.0 37 0.0008 41.5 34.7 109 520-635 534-650 (708)
158 PF12074 DUF3554: Domain of un 91.9 13 0.00027 41.4 19.3 52 395-447 57-112 (339)
159 PF13001 Ecm29: Proteasome sta 91.8 32 0.00069 40.5 28.3 227 393-631 232-485 (501)
160 KOG0567 HEAT repeat-containing 91.7 4.2 9E-05 42.7 13.6 91 519-633 187-279 (289)
161 KOG0168 Putative ubiquitin fus 91.5 40 0.00087 41.0 28.4 79 553-638 548-633 (1051)
162 PF08064 UME: UME (NUC010) dom 91.5 1.4 3E-05 40.2 9.3 78 514-593 6-87 (107)
163 KOG1243 Protein kinase [Genera 91.4 6.4 0.00014 46.6 16.4 114 515-636 326-439 (690)
164 KOG0414 Chromosome condensatio 91.1 52 0.0011 41.6 39.5 124 63-190 299-432 (1251)
165 PF08623 TIP120: TATA-binding 91.0 0.39 8.4E-06 47.3 5.3 96 193-302 3-116 (169)
166 PF10521 DUF2454: Protein of u 90.7 27 0.00058 37.7 19.9 177 169-370 87-278 (282)
167 PF14868 DUF4487: Domain of un 90.6 43 0.00093 39.7 23.7 90 344-433 466-556 (559)
168 PF04826 Arm_2: Armadillo-like 90.5 3.6 7.8E-05 43.7 12.5 149 117-281 13-164 (254)
169 PF14500 MMS19_N: Dos2-interac 90.5 27 0.00059 37.2 21.4 131 161-303 3-134 (262)
170 COG5096 Vesicle coat complex, 90.3 52 0.0011 40.2 39.3 97 530-634 459-561 (757)
171 smart00638 LPD_N Lipoprotein N 90.3 17 0.00036 43.6 19.7 125 515-651 393-525 (574)
172 PF08767 CRM1_C: CRM1 C termin 90.2 3.5 7.6E-05 45.4 12.6 123 89-211 85-226 (319)
173 KOG2160 Armadillo/beta-catenin 89.7 26 0.00057 38.5 18.3 177 369-548 94-282 (342)
174 KOG1949 Uncharacterized conser 89.7 26 0.00056 41.6 18.9 159 480-645 176-341 (1005)
175 PF08506 Cse1: Cse1; InterPro 89.5 41 0.0009 37.8 31.4 131 374-543 227-370 (370)
176 smart00638 LPD_N Lipoprotein N 89.5 12 0.00025 44.9 17.4 154 128-314 409-571 (574)
177 KOG0413 Uncharacterized conser 89.4 64 0.0014 39.9 29.8 128 511-652 964-1091(1529)
178 smart00802 UME Domain in UVSB 89.2 1.9 4E-05 39.3 7.9 78 513-592 5-86 (107)
179 PF08623 TIP120: TATA-binding 89.2 7.3 0.00016 38.5 12.5 123 513-638 3-151 (169)
180 KOG1078 Vesicle coat complex C 89.1 61 0.0013 39.2 29.0 189 342-548 339-532 (865)
181 KOG2549 Transcription initiati 88.9 28 0.00061 40.3 18.3 77 512-588 281-369 (576)
182 COG5218 YCG1 Chromosome conden 88.6 11 0.00024 43.7 14.7 104 113-221 88-192 (885)
183 KOG1993 Nuclear transport rece 88.1 71 0.0015 38.8 34.6 129 158-300 489-621 (978)
184 PF08064 UME: UME (NUC010) dom 87.6 6.6 0.00014 35.8 10.5 99 109-209 4-106 (107)
185 KOG2062 26S proteasome regulat 87.4 1.7 3.7E-05 51.2 7.9 129 73-215 553-681 (929)
186 PF08767 CRM1_C: CRM1 C termin 87.3 26 0.00056 38.6 16.9 125 514-638 66-198 (319)
187 KOG4524 Uncharacterized conser 87.2 88 0.0019 38.9 23.5 114 93-211 566-686 (1014)
188 PF07571 DUF1546: Protein of u 87.1 2.4 5.2E-05 37.5 7.1 59 530-588 17-77 (92)
189 PF04118 Dopey_N: Dopey, N-ter 87.1 51 0.0011 36.0 21.1 138 490-637 109-254 (307)
190 KOG1243 Protein kinase [Genera 86.9 3.8 8.2E-05 48.4 10.4 188 436-638 328-519 (690)
191 KOG3961 Uncharacterized conser 86.9 1.5 3.2E-05 44.3 6.1 90 520-610 115-204 (262)
192 PLN03076 ARF guanine nucleotid 86.9 1.3E+02 0.0029 40.7 35.7 59 512-570 1453-1512(1780)
193 PF01347 Vitellogenin_N: Lipop 86.6 5.5 0.00012 48.2 12.4 132 150-314 483-615 (618)
194 KOG1525 Sister chromatid cohes 86.6 1.2E+02 0.0025 39.7 28.7 166 456-635 241-406 (1266)
195 PF01347 Vitellogenin_N: Lipop 85.5 54 0.0012 39.6 20.1 97 512-629 483-584 (618)
196 COG5095 TAF6 Transcription ini 85.2 8.6 0.00019 40.9 10.9 136 150-303 194-339 (450)
197 KOG2549 Transcription initiati 85.0 18 0.0004 41.7 14.2 149 62-211 227-395 (576)
198 KOG1822 Uncharacterized conser 85.0 1.5E+02 0.0033 39.6 25.4 225 404-635 881-1128(2067)
199 KOG1293 Proteins containing ar 84.9 18 0.0004 42.6 14.3 119 65-187 410-534 (678)
200 smart00802 UME Domain in UVSB 84.8 9.3 0.0002 34.8 9.8 99 108-208 3-105 (107)
201 KOG1822 Uncharacterized conser 84.7 1.6E+02 0.0034 39.5 39.4 137 259-423 884-1026(2067)
202 PF10363 DUF2435: Protein of u 84.5 11 0.00025 33.2 10.0 84 520-615 4-87 (92)
203 KOG2933 Uncharacterized conser 84.5 17 0.00036 39.2 12.8 125 88-219 101-225 (334)
204 PF08161 NUC173: NUC173 domain 84.2 15 0.00032 37.5 12.1 164 377-546 19-197 (198)
205 KOG1848 Uncharacterized conser 84.0 1.2E+02 0.0027 39.1 21.5 116 521-636 999-1134(1610)
206 PF05918 API5: Apoptosis inhib 83.3 1.1E+02 0.0023 36.4 27.2 253 449-737 34-295 (556)
207 KOG3961 Uncharacterized conser 83.1 2.4 5.2E-05 42.8 5.6 89 478-566 114-205 (262)
208 KOG2137 Protein kinase [Signal 83.0 1.2E+02 0.0025 36.7 20.0 220 339-568 293-520 (700)
209 KOG4524 Uncharacterized conser 82.1 1.4E+02 0.0031 37.1 35.5 91 517-610 801-894 (1014)
210 PF10350 DUF2428: Putative dea 81.5 12 0.00026 39.7 10.8 113 59-171 120-254 (255)
211 PF10363 DUF2435: Protein of u 81.5 9.6 0.00021 33.7 8.3 72 117-189 4-75 (92)
212 PF12783 Sec7_N: Guanine nucle 81.2 15 0.00033 36.2 10.8 125 58-187 10-147 (168)
213 KOG2081 Nuclear transport regu 80.3 1.3E+02 0.0027 35.3 25.3 153 491-653 304-477 (559)
214 KOG0567 HEAT repeat-containing 79.9 87 0.0019 33.2 15.8 58 69-136 62-120 (289)
215 PF01603 B56: Protein phosphat 79.2 84 0.0018 35.9 17.3 91 181-279 279-369 (409)
216 KOG1293 Proteins containing ar 79.1 39 0.00084 40.0 14.2 103 124-226 427-531 (678)
217 PF08713 DNA_alkylation: DNA a 79.1 6.2 0.00013 40.4 7.5 78 115-199 119-196 (213)
218 PF12054 DUF3535: Domain of un 78.8 1.3E+02 0.0028 34.8 18.7 36 397-432 310-345 (441)
219 cd06561 AlkD_like A new struct 78.7 29 0.00062 34.9 12.2 75 119-199 108-182 (197)
220 KOG1517 Guanine nucleotide bin 78.7 25 0.00053 43.7 12.8 129 91-222 573-726 (1387)
221 KOG1810 Cell cycle-associated 78.4 1.1E+02 0.0025 39.0 18.5 221 55-281 709-967 (1417)
222 PF12726 SEN1_N: SEN1 N termin 78.4 1.8E+02 0.0039 36.0 37.0 97 115-211 119-226 (727)
223 KOG1566 Conserved protein Mo25 76.7 49 0.0011 35.8 13.1 163 62-226 67-284 (342)
224 PF13001 Ecm29: Proteasome sta 76.3 1.7E+02 0.0036 34.5 25.9 109 397-507 317-443 (501)
225 KOG1517 Guanine nucleotide bin 76.2 76 0.0016 39.8 15.9 96 133-228 573-671 (1387)
226 PF05536 Neurochondrin: Neuroc 76.0 1.8E+02 0.0038 34.7 26.8 186 493-699 72-267 (543)
227 KOG1848 Uncharacterized conser 75.7 2.6E+02 0.0056 36.4 28.2 281 247-548 838-1186(1610)
228 PF12765 Cohesin_HEAT: HEAT re 75.0 4.6 9.9E-05 30.0 3.7 40 98-139 2-41 (42)
229 PF12530 DUF3730: Protein of u 74.9 1.1E+02 0.0024 32.0 15.5 94 530-638 95-189 (234)
230 PF00514 Arm: Armadillo/beta-c 74.7 5.8 0.00013 29.0 4.2 28 158-185 13-40 (41)
231 PF14631 FancD2: Fanconi anaem 73.7 83 0.0018 41.8 16.9 166 381-548 417-583 (1426)
232 PF00790 VHS: VHS domain; Int 73.6 21 0.00046 34.1 9.0 106 523-639 13-123 (140)
233 COG5095 TAF6 Transcription ini 73.6 1.3E+02 0.0028 32.5 14.9 75 512-586 270-356 (450)
234 KOG4413 26S proteasome regulat 72.6 1.5E+02 0.0033 32.3 20.7 284 342-636 66-379 (524)
235 KOG0803 Predicted E3 ubiquitin 71.9 52 0.0011 42.7 14.0 211 521-744 43-268 (1312)
236 PF08161 NUC173: NUC173 domain 71.7 46 0.001 33.9 11.3 65 97-164 22-86 (198)
237 KOG2973 Uncharacterized conser 71.5 24 0.00052 38.0 9.3 65 122-188 9-73 (353)
238 PF12054 DUF3535: Domain of un 71.3 2E+02 0.0044 33.2 22.2 67 341-408 109-177 (441)
239 PF12333 Ipi1_N: Rix1 complex 71.2 18 0.00038 32.7 7.3 62 148-209 2-63 (102)
240 PF12333 Ipi1_N: Rix1 complex 70.6 35 0.00076 30.7 9.1 59 511-569 3-62 (102)
241 cd03568 VHS_STAM VHS domain fa 69.5 35 0.00077 32.8 9.4 101 527-639 12-115 (144)
242 PF04078 Rcd1: Cell differenti 67.5 1.7E+02 0.0038 31.0 14.6 175 92-278 66-260 (262)
243 KOG2022 Nuclear transport rece 67.2 3.2E+02 0.0069 33.9 53.9 185 288-485 405-595 (982)
244 PF03224 V-ATPase_H_N: V-ATPas 65.6 2.1E+02 0.0046 31.2 17.0 130 162-301 63-200 (312)
245 PF08569 Mo25: Mo25-like; Int 65.3 2.3E+02 0.0049 31.5 17.0 132 96-227 140-282 (335)
246 KOG2973 Uncharacterized conser 65.2 2.1E+02 0.0046 31.1 22.4 107 159-280 5-111 (353)
247 cd05394 RasGAP_RASA2 RASA2 (or 64.9 68 0.0015 35.1 11.4 32 626-657 80-111 (313)
248 PF08389 Xpo1: Exportin 1-like 64.2 53 0.0011 31.0 9.7 114 62-181 11-148 (148)
249 KOG1048 Neural adherens juncti 63.7 3.4E+02 0.0075 33.1 22.9 108 118-228 235-349 (717)
250 PF08569 Mo25: Mo25-like; Int 63.7 2.4E+02 0.0052 31.3 22.0 192 396-590 73-284 (335)
251 cd03569 VHS_Hrs_Vps27p VHS dom 62.7 67 0.0015 30.8 9.9 102 527-639 16-119 (142)
252 PF11919 DUF3437: Domain of un 62.4 10 0.00022 33.3 3.8 47 90-137 4-50 (90)
253 PF12074 DUF3554: Domain of un 61.7 2.6E+02 0.0056 30.9 23.9 168 478-651 61-251 (339)
254 KOG0803 Predicted E3 ubiquitin 61.6 5E+02 0.011 34.2 19.7 113 155-278 39-151 (1312)
255 PF04510 DUF577: Family of unk 60.2 56 0.0012 32.3 8.7 97 537-634 60-164 (174)
256 cd03561 VHS VHS domain family; 58.9 82 0.0018 29.8 9.7 62 125-186 46-112 (133)
257 cd03568 VHS_STAM VHS domain fa 58.5 1.3E+02 0.0027 29.0 11.0 59 125-183 46-107 (144)
258 PF12765 Cohesin_HEAT: HEAT re 58.3 19 0.0004 26.8 4.0 24 199-222 18-41 (42)
259 PF01851 PC_rep: Proteasome/cy 57.7 10 0.00023 26.9 2.5 35 94-134 1-35 (35)
260 PF12397 U3snoRNP10: U3 small 57.4 53 0.0012 30.3 8.0 78 557-641 3-82 (121)
261 smart00185 ARM Armadillo/beta- 57.1 14 0.00031 26.3 3.3 28 158-185 13-40 (41)
262 KOG1837 Uncharacterized conser 56.2 2.1E+02 0.0045 37.7 14.8 90 464-557 1531-1620(1621)
263 PF14225 MOR2-PAG1_C: Cell mor 54.9 2.9E+02 0.0064 29.5 16.4 202 341-556 47-262 (262)
264 cd03561 VHS VHS domain family; 52.7 74 0.0016 30.0 8.3 75 518-592 36-115 (133)
265 cd03572 ENTH_epsin_related ENT 52.0 1.2E+02 0.0026 28.3 9.2 89 337-427 19-117 (122)
266 PF00514 Arm: Armadillo/beta-c 51.6 29 0.00063 25.2 4.2 28 520-547 13-40 (41)
267 PF11701 UNC45-central: Myosin 51.1 1.3E+02 0.0028 29.3 9.9 131 412-544 17-155 (157)
268 PF12530 DUF3730: Protein of u 49.7 3.3E+02 0.0071 28.5 20.9 169 408-589 9-185 (234)
269 KOG1810 Cell cycle-associated 49.4 3.8E+02 0.0083 34.7 15.2 270 88-388 658-967 (1417)
270 cd03572 ENTH_epsin_related ENT 49.2 2.1E+02 0.0046 26.7 10.4 94 127-226 13-117 (122)
271 cd03569 VHS_Hrs_Vps27p VHS dom 48.8 1.6E+02 0.0036 28.2 10.0 59 126-184 51-112 (142)
272 PF00790 VHS: VHS domain; Int 48.8 2.2E+02 0.0049 27.0 11.0 68 117-184 43-116 (140)
273 PF07571 DUF1546: Protein of u 48.5 71 0.0015 28.2 6.9 45 167-214 16-62 (92)
274 PF04388 Hamartin: Hamartin pr 48.2 1.6E+02 0.0035 36.0 12.1 81 213-302 82-162 (668)
275 smart00567 EZ_HEAT E-Z type HE 47.9 18 0.0004 24.3 2.4 28 533-570 1-28 (30)
276 smart00288 VHS Domain present 46.7 2.1E+02 0.0045 27.0 10.3 75 518-592 36-114 (133)
277 KOG2199 Signal transducing ada 46.6 2.3E+02 0.0049 31.8 11.5 129 515-654 8-138 (462)
278 PF11698 V-ATPase_H_C: V-ATPas 46.4 67 0.0014 29.9 6.5 69 157-226 43-113 (119)
279 cd00197 VHS_ENTH_ANTH VHS, ENT 45.9 1.4E+02 0.003 27.2 8.8 72 515-586 33-112 (115)
280 PF12783 Sec7_N: Guanine nucle 45.2 1.7E+02 0.0036 28.7 9.9 72 518-589 72-146 (168)
281 KOG1851 Uncharacterized conser 44.2 9.4E+02 0.02 32.2 32.2 156 434-593 1522-1682(1710)
282 PF10350 DUF2428: Putative dea 43.9 1.7E+02 0.0037 31.0 10.3 117 93-210 111-251 (255)
283 PF03224 V-ATPase_H_N: V-ATPas 43.9 61 0.0013 35.5 7.1 119 515-635 55-180 (312)
284 cd03567 VHS_GGA VHS domain fam 43.6 2.2E+02 0.0049 27.2 9.9 111 527-645 13-128 (139)
285 KOG2213 Apoptosis inhibitor 5/ 43.6 5.3E+02 0.011 29.1 20.4 54 372-430 38-91 (460)
286 cd05134 RasGAP_RASA3 RASA3 (or 43.6 2.4E+02 0.0053 30.9 11.4 31 627-657 81-111 (310)
287 KOG0889 Histone acetyltransfer 43.2 1.3E+03 0.029 33.7 21.6 87 380-468 699-798 (3550)
288 KOG2011 Sister chromatid cohes 42.0 8.7E+02 0.019 31.2 18.1 169 375-549 172-356 (1048)
289 PF12830 Nipped-B_C: Sister ch 41.6 1.7E+02 0.0036 29.5 9.3 67 116-186 8-74 (187)
290 PF14631 FancD2: Fanconi anaem 41.5 1E+03 0.023 32.0 28.4 167 462-637 419-586 (1426)
291 PF12397 U3snoRNP10: U3 small 40.8 2.9E+02 0.0063 25.3 12.1 70 516-589 3-74 (121)
292 cd03567 VHS_GGA VHS domain fam 40.3 3.3E+02 0.0072 26.0 10.6 75 518-592 37-119 (139)
293 PF11919 DUF3437: Domain of un 40.0 55 0.0012 28.8 4.7 56 534-590 4-59 (90)
294 smart00288 VHS Domain present 39.3 2.6E+02 0.0056 26.4 9.7 60 125-184 46-109 (133)
295 PF12231 Rif1_N: Rap1-interact 37.2 6.4E+02 0.014 28.3 26.5 173 458-635 155-353 (372)
296 PF08146 BP28CT: BP28CT (NUC21 34.7 4.4E+02 0.0095 25.6 11.3 108 285-408 3-117 (153)
297 KOG2005 26S proteasome regulat 34.5 9.2E+02 0.02 29.3 18.2 232 103-426 39-293 (878)
298 KOG1837 Uncharacterized conser 34.4 2E+02 0.0044 37.8 10.1 70 155-225 1539-1608(1621)
299 PF09324 DUF1981: Domain of un 33.1 1.6E+02 0.0034 25.6 6.5 66 479-544 19-84 (86)
300 PF11698 V-ATPase_H_C: V-ATPas 32.5 1.2E+02 0.0026 28.2 5.9 70 357-428 43-114 (119)
301 PF11841 DUF3361: Domain of un 31.6 5.1E+02 0.011 25.5 10.7 74 117-190 59-135 (160)
302 PF09712 PHA_synth_III_E: Poly 29.7 4.8E+02 0.01 28.3 11.0 78 716-796 175-252 (293)
303 PF05536 Neurochondrin: Neuroc 29.7 1E+03 0.022 28.3 35.5 174 52-229 65-262 (543)
304 smart00185 ARM Armadillo/beta- 29.0 74 0.0016 22.4 3.3 28 520-547 13-40 (41)
305 PF12830 Nipped-B_C: Sister ch 28.7 2.8E+02 0.0061 27.8 8.5 68 150-227 5-73 (187)
306 PF04388 Hamartin: Hamartin pr 28.4 1.2E+03 0.025 28.7 15.1 91 437-528 69-161 (668)
307 PF08389 Xpo1: Exportin 1-like 28.4 4.8E+02 0.01 24.2 10.4 48 492-543 100-148 (148)
308 KOG1789 Endocytosis protein RM 27.9 1.4E+03 0.031 29.4 30.3 89 491-584 1825-1918(2235)
309 PF14222 MOR2-PAG1_N: Cell mor 26.8 1.1E+03 0.025 28.0 20.3 203 379-588 13-248 (552)
310 PF01603 B56: Protein phosphat 26.7 9.9E+02 0.022 27.2 19.7 91 497-589 274-370 (409)
311 PF06685 DUF1186: Protein of u 26.5 1.5E+02 0.0032 31.4 6.1 67 90-166 128-194 (249)
312 PF04510 DUF577: Family of unk 26.3 3.1E+02 0.0067 27.3 7.8 57 69-130 41-98 (174)
313 cd00197 VHS_ENTH_ANTH VHS, ENT 26.3 3.8E+02 0.0083 24.2 8.3 36 154-189 34-69 (115)
314 PF03130 HEAT_PBS: PBS lyase H 26.2 77 0.0017 20.9 2.6 13 173-185 1-13 (27)
315 KOG0946 ER-Golgi vesicle-tethe 26.2 1.3E+03 0.029 28.6 34.8 117 71-189 119-244 (970)
316 cd03562 CID CID (CTD-Interacti 26.0 2.3E+02 0.0051 25.6 6.8 70 515-584 33-103 (114)
317 KOG2081 Nuclear transport regu 25.8 1.2E+03 0.025 27.7 35.1 337 109-480 146-509 (559)
318 TIGR01834 PHA_synth_III_E poly 25.3 9.4E+02 0.02 26.5 12.5 102 721-825 197-304 (320)
319 cd06561 AlkD_like A new struct 24.6 3.6E+02 0.0078 26.8 8.6 50 90-144 120-169 (197)
320 KOG3036 Protein involved in ce 24.6 6.8E+02 0.015 26.5 10.2 108 439-546 72-195 (293)
321 PF01417 ENTH: ENTH domain; I 24.2 3.5E+02 0.0075 25.1 7.7 73 153-226 35-119 (125)
322 PF12612 TFCD_C: Tubulin foldi 23.6 6.7E+02 0.015 25.1 10.3 93 533-636 21-118 (193)
323 PF09324 DUF1981: Domain of un 23.2 4.1E+02 0.0089 23.0 7.4 54 518-571 16-70 (86)
324 PF12612 TFCD_C: Tubulin foldi 23.1 6.4E+02 0.014 25.3 10.0 37 151-187 81-117 (193)
325 cd03565 VHS_Tom1 VHS domain fa 23.1 5.3E+02 0.011 24.6 8.8 64 117-183 43-112 (141)
326 KOG2011 Sister chromatid cohes 22.8 1.7E+03 0.037 28.7 20.5 54 131-185 170-228 (1048)
327 PF07539 DRIM: Down-regulated 22.7 5.4E+02 0.012 24.6 8.8 79 117-208 18-97 (141)
328 TIGR03060 PS_II_psb29 photosys 22.4 3.1E+02 0.0068 28.3 7.3 69 124-197 46-114 (214)
329 KOG3723 PH domain protein Melt 21.6 1.4E+03 0.03 27.1 12.8 29 271-299 182-210 (851)
330 KOG2122 Beta-catenin-binding p 21.2 2.1E+03 0.046 29.2 17.5 48 607-654 532-582 (2195)
331 KOG4825 Component of synaptic 20.9 1E+03 0.022 27.4 11.2 121 157-281 392-517 (666)
332 KOG2256 Predicted protein invo 20.8 1.5E+03 0.033 27.3 21.9 214 435-653 279-545 (661)
333 PF14837 INTS5_N: Integrator c 20.7 9.4E+02 0.02 24.8 12.8 28 264-291 103-131 (213)
334 PF13764 E3_UbLigase_R4: E3 ub 20.7 1.7E+03 0.037 27.9 22.6 77 113-189 164-261 (802)
335 TIGR03486 cas_csx13_C CRISPR-a 20.6 5.6E+02 0.012 24.9 8.1 78 99-182 65-149 (152)
336 cd07064 AlkD_like_1 A new stru 20.2 9.3E+02 0.02 24.5 12.3 77 116-199 115-191 (208)
No 1
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.8e-123 Score=1083.52 Aligned_cols=796 Identities=39% Similarity=0.629 Sum_probs=662.2
Q ss_pred CcceeecCChhhHHHHHHHHHHHhccCcccccccccccCcccccCCcccccCCCCccchHHHHHHHhhhcCCchHHHHHH
Q 003081 1 MSVVYELGDASMKQNLVDALVTTLTGSGKRKRTVKLAEDSEVFQEGAIGEGLGGGKLSTYKELCNLANEMGQPDLIYKFM 80 (850)
Q Consensus 1 l~~vy~~~~~~~~~~lv~~l~~~~~~~~~~~~~~~~~~~t~lf~~g~~~~~~~g~~~styk~l~~lA~~~g~p~lv~~fm 80 (850)
||||||+||..+|++||++||+|||||+++ +++|++|||||++|+||+||+||++|||||||+||+|+||||||||||
T Consensus 885 lglVYelgd~~~k~~LV~sL~~tl~~Gkr~--~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM 962 (1702)
T KOG0915|consen 885 LGLVYELGDSSLKKSLVDSLVNTLTGGKRK--AIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFM 962 (1702)
T ss_pred ceEEEecCCchhHHHHHHHHHHHHhccccc--cceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHH
Confidence 799999999999999999999999997655 589999999999999999999999999999999999999999999999
Q ss_pred HHhccchhhhhhhhHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 003081 81 DLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFD 160 (850)
Q Consensus 81 ~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~ 160 (850)
+||+|+|.||||+||||||+.|++++++.++||++++||+||||+|||++.||++|.+||++|++|++.++++|+.+|++
T Consensus 963 ~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~ 1042 (1702)
T KOG0915|consen 963 QLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILD 1042 (1702)
T ss_pred HHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCc
Q 003081 161 DLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTE 240 (850)
Q Consensus 161 ~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~ 240 (850)
+|+.++++++|||||+||.|+.||++|++.+++.++++++|.++||+|||+|++||+||.++++.++++|+|.|++.+
T Consensus 1043 eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~-- 1120 (1702)
T KOG0915|consen 1043 ELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTN-- 1120 (1702)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999854
Q ss_pred chhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhhhcc
Q 003081 241 ISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAG 320 (850)
Q Consensus 241 ~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~ 320 (850)
+..+++++..+||||+++|+.+++++||.+++.++.+++|..|+.|+||+|+|+|.|+++.+.+||+++||+..|+ ++
T Consensus 1121 ~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~--~~ 1198 (1702)
T KOG0915|consen 1121 GAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRL--IN 1198 (1702)
T ss_pred cccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhh--hh
Confidence 4568899999999999999999999999999999999999999999999999999999999999999999999999 67
Q ss_pred cchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHH
Q 003081 321 IQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSML 400 (850)
Q Consensus 321 ~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~l 400 (850)
+..+++|.+|.+++++||||+++++|++|+|..+|++++|++++++|.++|++||+||+++++.|+.|+|.+++||.+++
T Consensus 1199 ~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKl 1278 (1702)
T KOG0915|consen 1199 IETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKL 1278 (1702)
T ss_pred hHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhcC-Cch-hhHHHHHHHHHHHhhchhhhhhhHhh
Q 003081 401 LRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHID-DKN-SQISCAILLKSYSSVASDVLSGYHAV 478 (850)
Q Consensus 401 L~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~~-d~~-~r~~~~~~l~al~~~~~~~f~~~~~~ 478 (850)
+++|+.++ .|||++||++++.|+|+|++..++++.+++++.+..+|.+ ++. +..+|+.+.. |++++++.|++|.+.
T Consensus 1279 l~al~~g~-~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~-Ian~s~e~Lkn~asa 1356 (1702)
T KOG0915|consen 1279 LRALFPGA-KDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISN-IANYSQEMLKNYASA 1356 (1702)
T ss_pred HHHHhhcc-ccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHH-HHHhhHHHHHhhHHH
Confidence 99999999 6899999999999999999999999999999999998874 333 3444554444 999999999999999
Q ss_pred HhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHh-hcCCCHHHHHHHHHHHHHHHHHhCcchh-h
Q 003081 479 IVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEG-IASSSWSSKRKSAKAICKLGEILGESLS-N 556 (850)
Q Consensus 479 vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~-L~d~s~~vr~~aa~alg~la~~~g~~l~-~ 556 (850)
++|++|.+||+.+++..++|.++|.++++|..++++.|.++|+..++.. .++.+|.+|.+++.++..++..+..... |
T Consensus 1357 ILPLiFLa~~ee~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~~p 1436 (1702)
T KOG0915|consen 1357 ILPLIFLAMHEEEKANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAPIP 1436 (1702)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCChH
Confidence 9999999999988899999999999999999999999999999888877 5556699999999999999987766655 6
Q ss_pred hHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHc
Q 003081 557 YHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAF 636 (850)
Q Consensus 557 ~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~ 636 (850)
++-.+.+.+.+++.||+|+||+.+++|+.....+|...... ..+.+.-+..+++.|.+..|+..+..+.+..+.+.
T Consensus 1437 ~ilkl~~~ll~~L~GRiwdGKe~iLKAl~~~~~a~~~~v~~----~~~si~~A~~~e~sr~~~~y~~~ala~~~~~lda~ 1512 (1702)
T KOG0915|consen 1437 VILKLALSLLDTLNGRIWDGKEEILKALASAFEAGLADVKR----NMSSIEHAVMEEVSRREAKYKIMALAGAGLALDAT 1512 (1702)
T ss_pred HHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhHHHHHH----hchHHHHHHHHHHHHHHhHHHHHHHhhhHHHHhhh
Confidence 78899999999999999999999999999888888754432 23478888889999999999999999999999999
Q ss_pred CCchh--HHhHHHHHHhhcccccccCCCCCCCCCCCcccchhhh-cccccHHHHHHhhhhhccccccccHHHHHHHHHHH
Q 003081 637 RDPKF--FNIIFPLLFEMCGSTALNKSGQVPLPSDASKEESADE-SVSAPLDKVLDCVSSCIHVAHVNDIIEQEKNLVQL 713 (850)
Q Consensus 637 ~~~~~--~~iv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (850)
+.+++ .....++-.+..+++.. .-..+.+.+.. .+.....-+++...+ .++.|+... +
T Consensus 1513 ~~e~~~~~~~~~~L~K~~d~~~s~---------~~qt~~e~d~~~~ka~~~~~lkes~~~-~~~~~~~~~------~--- 1573 (1702)
T KOG0915|consen 1513 KAERFEEVENAVWLAKKSDDEVSK---------LIQTRNEADIDDNKAGLLNLLKESRES-KLYTLNLTA------L--- 1573 (1702)
T ss_pred hhhhHHHHHHHHHHHhhhhhhhcc---------cccccchhhhhhccccHHHHHHHHHhh-hhhhhhhhh------h---
Confidence 76543 22223332222221110 00111111011 111222212233222 234554332 1
Q ss_pred HHhhcCCCCCchHHHHHHHHHHHHHHHHhhcccCCCCCCCCcChhHHHHHHHHhhCchhhhhhhhhhhhhHHHHHHHHHH
Q 003081 714 FTISLSPGFPWTVKMSAFSSIKELCSRLQKTLDDSAGTSPHAGISSLIQELFHTVSPKVVECISTVKIAQVHISASECLL 793 (850)
Q Consensus 714 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~a~~~~~ 793 (850)
+......+..++...+++.+.++.....-. + .+. .+ ...+....+++..+.+|..+.+..|..
T Consensus 1574 -~is~~a~~~sr~~~~lLs~i~~~v~~~~~~---~------~s~------~f-~~~~~~l~~e~~~p~ar~~i~~~~c~~ 1636 (1702)
T KOG0915|consen 1574 -AISCPAFSNSREPESLLSQITDYVKSLVIA---D------KSA------QF-FFNELALSEEHTTPRARFVIAGKLCDN 1636 (1702)
T ss_pred -hhhhhhhhcchhhHHHHHHHHHHHHHhHHH---H------HHH------HH-HHHHHHHHhhccChhhhHHHHHHHHHH
Confidence 111223455666666666666665544422 0 000 01 111222344555567776677777776
Q ss_pred HHHHHhccccccccCccchHHHHHHHHHHhhhH---HHHHHHHHHHHHhccccc
Q 003081 794 EICKLFRQISSVYSSNIGIKGELVHQCEMEKNM---EAKSLLKKCIDILENLEV 844 (850)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 844 (850)
.++.+.-.....+....+..-+|.-.+..|-++ +.++.++-..+.+.+.++
T Consensus 1637 il~~~~~~~~~~~~~~a~~~leVvL~li~~s~~~~~~~~sll~~i~esla~~pe 1690 (1702)
T KOG0915|consen 1637 ILEQLDELCASPHKTEATDALEVVLRLIERSSRFGVDANSLLRLINESLAGEPE 1690 (1702)
T ss_pred HHHHHHHhhcCCcchhHHHHHHHHHHHHHhcccccchhHHHHHHHHHhhhcCCC
Confidence 666555222112344455566666666665666 566666666666665443
No 2
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-31 Score=291.81 Aligned_cols=613 Identities=15% Similarity=0.177 Sum_probs=421.2
Q ss_pred ceeecCChhhHHHHHHHHHHHhccCcccccccccccCcc----------cccCCcccccCCCCccchHHHHHHHhhhcCC
Q 003081 3 VVYELGDASMKQNLVDALVTTLTGSGKRKRTVKLAEDSE----------VFQEGAIGEGLGGGKLSTYKELCNLANEMGQ 72 (850)
Q Consensus 3 ~vy~~~~~~~~~~lv~~l~~~~~~~~~~~~~~~~~~~t~----------lf~~g~~~~~~~g~~~styk~l~~lA~~~g~ 72 (850)
|||-+.+.+..+..++++-.-+....-|.+..+...+.. +.++..|=.++.|--+|| |.+--.--+|
T Consensus 50 L~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITT---I~s~~~~~~w 126 (885)
T KOG2023|consen 50 LIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIKSECLHGLGDASPLIRATVGIVITT---IASTGGLQHW 126 (885)
T ss_pred eeEEEecccccchhHHHHhhhhHhccccccccCCChHHHHHHHHHHHhhccCchHHHHhhhhheeee---eecccccccc
Confidence 578887777777777777766665543333333333221 233333434456777888 7777778899
Q ss_pred chHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhc-----hhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCC
Q 003081 73 PDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALK-----PHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADP 147 (850)
Q Consensus 73 p~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~-----p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~ 147 (850)
|++.+.++.+..+.+ .+.-+||+-||++|++++.+.++ ..++-++|++++|+.+|+|++|.-+..+.++.+...
T Consensus 127 pelLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~ 205 (885)
T KOG2023|consen 127 PELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ 205 (885)
T ss_pred hhHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC
Confidence 999999999998874 78899999999999999866554 357889999999999999999999999999998777
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCC--------------------------------------
Q 003081 148 KRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRK-------------------------------------- 189 (850)
Q Consensus 148 ~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~-------------------------------------- 189 (850)
+..+.-|.|..++.++...+|.+..||.-.|.|+.-|++.++
T Consensus 206 ~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~ae 285 (885)
T KOG2023|consen 206 TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAE 285 (885)
T ss_pred cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence 778888999999999999999999999999999999998654
Q ss_pred ----chhhhHHHHHHHHHHHHHhc-----------------------cCcHHHHH---HHHHH--------------HHH
Q 003081 190 ----FDQVGKHLRRIWTAAFRAMD-----------------------DIKETVRT---AGDKL--------------CRS 225 (850)
Q Consensus 190 ----~~~l~~~L~~i~~~l~~~ld-----------------------D~k~~VR~---aA~~~--------------~~~ 225 (850)
.+.+.|||++|+|.+++.|- |+|+..-+ .+..- -.+
T Consensus 286 qpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~ 365 (885)
T KOG2023|consen 286 QPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDA 365 (885)
T ss_pred CcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccc
Confidence 22344556666666555441 22221100 00000 002
Q ss_pred HHHHHHHhhhcccC---cchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhcc
Q 003081 226 VTSLTIRLCDVTLT---EISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLS 302 (850)
Q Consensus 226 L~~~~~r~~~~~~~---~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls 302 (850)
++.|.+|.|+...- +.....+++..++|+|- ..|.++.|-+|+..+-++|.||+.+-..+-||+|+|+|.|++.|+
T Consensus 366 ~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk-~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~ 444 (885)
T KOG2023|consen 366 FSDWNLRKCSAAALDVLANVFGDELLPILLPLLK-EHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLD 444 (885)
T ss_pred cccccHhhccHHHHHHHHHhhHHHHHHHHHHHHH-HHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhc
Confidence 23356666643321 12334578899999876 357788999999999999999999999999999999999999999
Q ss_pred ccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHh--hHHH
Q 003081 303 SLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRV--GVAS 380 (850)
Q Consensus 303 ~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~--~a~~ 380 (850)
+-.|-++...+|..++|+- + ++. ++.-+.|.|.+...++.-.+-+.|+ ++|.
T Consensus 445 DKkplVRsITCWTLsRys~----w---------------v~~-------~~~~~~f~pvL~~ll~~llD~NK~VQEAAcs 498 (885)
T KOG2023|consen 445 DKKPLVRSITCWTLSRYSK----W---------------VVQ-------DSRDEYFKPVLEGLLRRLLDSNKKVQEAACS 498 (885)
T ss_pred cCccceeeeeeeeHhhhhh----h---------------Hhc-------CChHhhhHHHHHHHHHHHhcccHHHHHHHHH
Confidence 9999998888888877642 0 000 0112345666666666555556665 7888
Q ss_pred HHHHHHHHhcccccchHHHHHHHHHHhhh--hcCcHHHHHHHHHHHHHHhhhC-----CHHHHHHHHHHHHHhhc--CCc
Q 003081 381 FISLLVQKIGMDIKPYTSMLLRLLFPVVK--EEKSAAAKRAFASACASVLKYA-----TPSQAQKLIEETAALHI--DDK 451 (850)
Q Consensus 381 ~l~~L~~~~~~~~~py~~~lL~~Ll~~l~--~D~n~~Vr~~~a~alg~L~~~~-----~~~~v~~li~~l~~~~~--~d~ 451 (850)
.+..|....+..+-||.+.++..+..++. +.+|--| ...|+|.+.... .+..++.+++++++.|. .|+
T Consensus 499 AfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlI---LYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~ 575 (885)
T KOG2023|consen 499 AFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLI---LYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDS 575 (885)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceeh---HHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcc
Confidence 88899999999999999999999999884 2344333 235566655433 34458888999988774 333
Q ss_pred hhh-HHHHHHHHHHHhh--------chhhhhhhHhhHhHH---HHHHhcC-----CchHHHHHHHHHHHHhcCCChhhHH
Q 003081 452 NSQ-ISCAILLKSYSSV--------ASDVLSGYHAVIVPV---IFISRFE-----DDKYVSDLFEELWEENTSGDRVTLQ 514 (850)
Q Consensus 452 ~~r-~~~~~~l~al~~~--------~~~~f~~~~~~vlP~---l~~~~~d-----~~~~v~~~~~~v~~~l~~~~~~~i~ 514 (850)
+.. ---..++.+++.. +.++|......+-.. +....++ ++++..-...+++++++.|.++++.
T Consensus 576 DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie 655 (885)
T KOG2023|consen 576 DKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIE 655 (885)
T ss_pred cchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchH
Confidence 221 1112233444444 444444433322211 1111222 2333211233667777777666665
Q ss_pred hhH--HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcc
Q 003081 515 LYL--GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCH 592 (850)
Q Consensus 515 ~yl--~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~ 592 (850)
+-+ ..|++++..|+.|+-.+||++|.+.+|+++..+.+.+.|++...+|.|-..+++..-..-.....|+|.++.+.+
T Consensus 656 ~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g 735 (885)
T KOG2023|consen 656 PLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMG 735 (885)
T ss_pred HHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhc
Confidence 443 559999999999999999999999999999999999999999999999999976555566777889999998876
Q ss_pred cccccCCCCchHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHHcCC---chhHHhHHHHHHhhc
Q 003081 593 KDISAEDPTTPFAIVDMVSSACRKKI--KKYREAAFSCLEQVIKAFRD---PKFFNIIFPLLFEMC 653 (850)
Q Consensus 593 ~~l~~~~~~~~~~i~~~l~~e~~r~~--~~~R~~Al~~Lg~l~~~~~~---~~~~~iv~~~l~~~~ 653 (850)
..+. +++..++.-+..-+++.+ ..+-.-..-++|++....|. ..+...+.|.-..+.
T Consensus 736 ~~~~----~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~ 797 (885)
T KOG2023|consen 736 LKMK----QYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLR 797 (885)
T ss_pred hhhh----hHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhc
Confidence 5443 455555554444444432 34455555667776655543 223444445555443
No 3
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-29 Score=293.18 Aligned_cols=595 Identities=13% Similarity=0.090 Sum_probs=404.1
Q ss_pred cccCcccccCCcccccC-CCCccchHHHHHHHhhhcCCchHHHHHHHHh---ccchhhhhhhhHHhhHHHHHHHhhhhhc
Q 003081 36 LAEDSEVFQEGAIGEGL-GGGKLSTYKELCNLANEMGQPDLIYKFMDLA---NYQVSLNSKRGAAFGFSKIAKQAGDALK 111 (850)
Q Consensus 36 ~~~~t~lf~~g~~~~~~-~g~~~styk~l~~lA~~~g~p~lv~~fm~la---~~~~~w~sr~gAa~gl~~I~~~~~~~l~ 111 (850)
++.|-|...+..+.... +.....+-..|+.+|..+|...+.|.+|+.. -.++.|..|++|.++|+.|.+||++.|.
T Consensus 305 ~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~ 384 (1075)
T KOG2171|consen 305 EEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMI 384 (1075)
T ss_pred cccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHH
Confidence 34444455545444221 1235667779999999999998888888866 3356799999999999999999999999
Q ss_pred hhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHH-HHHHHHHhhCCC-ChhHHHHHHHHHHHHHccCC
Q 003081 112 PHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDL-IFDDLLIQSGSR-LWRSREASCLSLADIIQGRK 189 (850)
Q Consensus 112 p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~-Il~~Ll~~l~~~-~wRVReaa~~Al~~Ll~~~~ 189 (850)
+.|++++|....++.||+|.||.+++++.+++.+|.+..+.+|+.. +.+.|+..+.+. +.||.-+++.|+.++.+.++
T Consensus 385 ~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~ 464 (1075)
T KOG2171|consen 385 GNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD 464 (1075)
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999988777766655 555777777665 46999999999999999999
Q ss_pred chhhhHHHHHHHH-HHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhccc-----------------------Cc-----
Q 003081 190 FDQVGKHLRRIWT-AAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTL-----------------------TE----- 240 (850)
Q Consensus 190 ~~~l~~~L~~i~~-~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~-----------------------~~----- 240 (850)
.+.+.|||+.++. ++..+.+..++.||+.+..++..++...-..+.+|. |.
T Consensus 465 ~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEci 544 (1075)
T KOG2171|consen 465 KSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECL 544 (1075)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHH
Confidence 9999999999999 455556677888999887776655432211111110 00
Q ss_pred --------chhHHhHHHHhHHHHhh--ccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhh
Q 003081 241 --------ISDARQSMDIVLPFLLA--EGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLN 310 (850)
Q Consensus 241 --------~~~~~~~l~~lLP~Ll~--~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~n 310 (850)
.....+.-..++..++. .|..++....+.+.+..|+.+|+..|+.|.||+|.+||.++..... .|++..
T Consensus 545 sli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~-~p~~~~ 623 (1075)
T KOG2171|consen 545 SLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARL-DPDVAL 623 (1075)
T ss_pred HHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhcc-CCcccC
Confidence 01111222333444332 1234456678899999999999999999999999999999998863 333221
Q ss_pred HHHHhh----hhcccchhhhHHHHHhhccCCcHHH---HHHHHHhhc---C---hhhHhhHHHHHHHHHhccCCCchHhh
Q 003081 311 YIELHA----ANAGIQTEKLENLRISIAKGSPMWD---TLDLCINVV---D---TESLDQLVPHLARLVRSGIGLNTRVG 377 (850)
Q Consensus 311 yl~~~a----~~~~~~~d~id~~r~~~~~~s~l~e---al~~~~~~l---d---~~~l~~lvp~L~~~lk~~~~~~tr~~ 377 (850)
.-.... +..+...........-.+++|-+.+ |++.+..|- . .+.+++.+...+-.++.....+.|.+
T Consensus 624 ~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~a 703 (1075)
T KOG2171|consen 624 SDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKA 703 (1075)
T ss_pred cCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 100000 0001100001011011234444433 223222221 1 11122222222223334456788999
Q ss_pred HHHHHHHHHHHh-------cccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCH-----HHHHHHH----H
Q 003081 378 VASFISLLVQKI-------GMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATP-----SQAQKLI----E 441 (850)
Q Consensus 378 a~~~l~~L~~~~-------~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~-----~~v~~li----~ 441 (850)
++..++.++.+. +..+++....+.+.++..+..++..+|-..+..+++.+++.+++ +.+.... .
T Consensus 704 a~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~ 783 (1075)
T KOG2171|consen 704 AAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLA 783 (1075)
T ss_pred HHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHH
Confidence 999999887643 23444555677778888886677888989999999999998773 2222221 1
Q ss_pred HHHHhh-------c----CCc--hhh-----------HHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHH
Q 003081 442 ETAALH-------I----DDK--NSQ-----------ISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDL 497 (850)
Q Consensus 442 ~l~~~~-------~----~d~--~~r-----------~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~ 497 (850)
.+.+.+ . +|+ +.+ ..+..++.++.+..+..|-+.+..+.|.++.........-|+.
T Consensus 784 ~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~ 863 (1075)
T KOG2171|consen 784 QLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQW 863 (1075)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 122111 1 111 111 2455677777888888898999999998865433333333777
Q ss_pred HHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCC---CC-
Q 003081 498 FEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPG---RL- 573 (850)
Q Consensus 498 ~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~---r~- 573 (850)
...+..++..+++.+..+|.+.+++.+..++.|++|+||++|++.+|.+|...|....+.....+|.|.+.++. |+
T Consensus 864 av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ar~E 943 (1075)
T KOG2171|consen 864 AVCIFDDLIEGCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPLARTE 943 (1075)
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChhhhhH
Confidence 77888888888888888999999999999999999999999999999999999998887778888888877743 21
Q ss_pred --hhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHHcC
Q 003081 574 --WEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSAC-RKKIKKYREAAFSCLEQVIKAFR 637 (850)
Q Consensus 574 --~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~-~r~~~~~R~~Al~~Lg~l~~~~~ 637 (850)
-...+.+..|++.++..... .-+ ++++++++...+ -.++..--.....+|.++.+.-+
T Consensus 944 e~~~ateNa~gaiaki~~~~~~-----~i~-vdqvl~~~l~~LPl~~D~eEa~~iy~~l~~L~e~n~ 1004 (1075)
T KOG2171|consen 944 ENRRATENAIGAIAKILLFNPN-----RIP-VDQVLPAWLSWLPLKEDKEEAVPIYTFLSDLYESNH 1004 (1075)
T ss_pred HHhHHHHHHHHHHHHHHHhCCc-----cCc-HHHHHHHHHHhCCCccchhhhhhHHHHHHHHHHhCC
Confidence 12356777777777765432 234 788888777554 34555566777888888888754
No 4
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=8.8e-25 Score=244.78 Aligned_cols=491 Identities=14% Similarity=0.199 Sum_probs=357.1
Q ss_pred hhhHHhhHHHHHHHhhhhhchhhhh-HHHHHHhhcCCCCHhHHHHHHHHHHHhccC----------------Ch------
Q 003081 92 KRGAAFGFSKIAKQAGDALKPHLRL-LIPKLVRFQYDPDKNVQDAMAHIWKSLVAD----------------PK------ 148 (850)
Q Consensus 92 r~gAa~gl~~I~~~~~~~l~p~L~~-lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d----------------~~------ 148 (850)
+.+|+-.|.+|+...-+.|+||+.+ +++.-...++.+|+.|.--...-|..+... ++
T Consensus 234 ~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa 313 (859)
T KOG1241|consen 234 QVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFA 313 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHH
Confidence 3444456677777777777777665 666666666777777776666666644321 00
Q ss_pred -----H-------------------------------------HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHc
Q 003081 149 -----R-------------------------------------TIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQ 186 (850)
Q Consensus 149 -----~-------------------------------------~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~ 186 (850)
. .-++.++++++++-+++.+++||-|+++..|||.++.
T Consensus 314 ~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~ 393 (859)
T KOG1241|consen 314 RQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILE 393 (859)
T ss_pred HHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhc
Confidence 0 1133567889999999999999999999999999999
Q ss_pred cCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhH
Q 003081 187 GRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDS 266 (850)
Q Consensus 187 ~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~e 266 (850)
|+....+.++.++.+|.+.+.|.|..-.||.++ +|++++++ ..+.. .......+..+++.++ .|+.+ .+.
T Consensus 394 gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTa---AwtlgrI~-d~l~e----~~~n~~~l~~~l~~l~-~gL~D-ePr 463 (859)
T KOG1241|consen 394 GPEPDKLTPIVIQALPSIINLMSDPSLWVKDTA---AWTLGRIA-DFLPE----AIINQELLQSKLSALL-EGLND-EPR 463 (859)
T ss_pred CCchhhhhHHHhhhhHHHHHHhcCchhhhcchH---HHHHHHHH-hhchh----hcccHhhhhHHHHHHH-HHhhh-Cch
Confidence 999999999999999999999999999999765 47776654 11111 1223557788888887 58774 578
Q ss_pred HHHHHHHHHHHHHHhcC---------cccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCC
Q 003081 267 ISKASIGVVMKLVKGAG---------IAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGS 337 (850)
Q Consensus 267 vr~~a~~~L~~la~~~g---------~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s 337 (850)
+...+|+++..+++.+. ....||.+.|+..|+......+-. -..+|.+
T Consensus 464 va~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgn------------------qsNLR~A----- 520 (859)
T KOG1241|consen 464 VASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGN------------------QSNLRSA----- 520 (859)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccc------------------hhhHHHH-----
Confidence 88899999999987632 245688899999888876532110 0233432
Q ss_pred cHHHHHHHHHhhcChhh---HhhH----HHHHHHHHhcc-CCCchHh-------hHHHHHHHHHHHhcccccchHHHHHH
Q 003081 338 PMWDTLDLCINVVDTES---LDQL----VPHLARLVRSG-IGLNTRV-------GVASFISLLVQKIGMDIKPYTSMLLR 402 (850)
Q Consensus 338 ~l~eal~~~~~~ld~~~---l~~l----vp~L~~~lk~~-~~~~tr~-------~a~~~l~~L~~~~~~~~~py~~~lL~ 402 (850)
.++|+..++.+...++ ..++ +-+|.+.+.+. .+..+|. --|.+|..+.++.+.++.++.+.+|.
T Consensus 521 -AYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~ 599 (859)
T KOG1241|consen 521 -AYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMG 599 (859)
T ss_pred -HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHH
Confidence 2456666665554332 2222 33333344311 1223332 34566777778888899999999999
Q ss_pred HHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHH
Q 003081 403 LLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPV 482 (850)
Q Consensus 403 ~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~ 482 (850)
.+++.+..-++..|.+.+ ..++++++...+..|..|.+.|.|+
T Consensus 600 lflri~~s~~s~~v~e~a-------------------------------------~laV~tl~~~Lg~~F~kym~~f~py 642 (859)
T KOG1241|consen 600 LFLRIFESKRSAVVHEEA-------------------------------------FLAVSTLAESLGKGFAKYMPAFKPY 642 (859)
T ss_pred HHHHHHcCCccccchHHH-------------------------------------HHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 999999322444444333 3455666667788999999999999
Q ss_pred HHHHhcC-CchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHHHHHhCcchhhhHH
Q 003081 483 IFISRFE-DDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASS--SWSSKRKSAKAICKLGEILGESLSNYHH 559 (850)
Q Consensus 483 l~~~~~d-~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~--s~~vr~~aa~alg~la~~~g~~l~~~l~ 559 (850)
+..++.. .+..|+....++.++++...+..+.||.++++..+.++|+++ +.+||.....++||+|..+|.+|.+|+.
T Consensus 643 L~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~ 722 (859)
T KOG1241|consen 643 LLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLE 722 (859)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHH
Confidence 9999854 445699999999999999998899999999999999999998 4789999999999999999999999999
Q ss_pred HHHHHHHHhcCCCC-----------hhhHHHHHHHHHHHHHhcccccccC-CCCchHHHHHHHHHHHhhc--CHHHHHHH
Q 003081 560 VLLESIMKEVPGRL-----------WEGKDALLYAIGSISTSCHKDISAE-DPTTPFAIVDMVSSACRKK--IKKYREAA 625 (850)
Q Consensus 560 ~llp~L~~~L~~r~-----------~~gKe~vL~aL~~l~~~~~~~l~~~-~~~~~~~i~~~l~~e~~r~--~~~~R~~A 625 (850)
.++|.|.++-+-.+ -..|+.+|+++..+..+.+..-... ..|+++.|+..+-+-..+. ....-+.|
T Consensus 723 ~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a 802 (859)
T KOG1241|consen 723 MVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAA 802 (859)
T ss_pred HHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHH
Confidence 99999998873221 1359999999999999988432211 3578888888777655443 47888999
Q ss_pred HHHHHHHHHHcCCchh-----HHhHHHHHHhhc
Q 003081 626 FSCLEQVIKAFRDPKF-----FNIIFPLLFEMC 653 (850)
Q Consensus 626 l~~Lg~l~~~~~~~~~-----~~iv~~~l~~~~ 653 (850)
+..+|+++..|+.+.. .+.+..+|.+..
T Consensus 803 ~GlIgDL~~~fg~~~~~~~~~~~~i~~~L~~~~ 835 (859)
T KOG1241|consen 803 LGLIGDLATMFGKGVIKLFLDEDWIKDFLNEGR 835 (859)
T ss_pred HHHHHHHHHHcccchhhhhcchHHHHHHHHHhh
Confidence 9999999999986532 355666666543
No 5
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.1e-23 Score=232.44 Aligned_cols=430 Identities=15% Similarity=0.190 Sum_probs=319.2
Q ss_pred ccchHHHHHHHhhhcCCc--hHHHHHHHHhccchhhhhhhhHHhhHHHHHHHh-hhhhchhhhhHHHHHHhhcCCCCHhH
Q 003081 56 KLSTYKELCNLANEMGQP--DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQA-GDALKPHLRLLIPKLVRFQYDPDKNV 132 (850)
Q Consensus 56 ~~styk~l~~lA~~~g~p--~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~-~~~l~p~L~~lvp~L~r~~~Dp~~~V 132 (850)
++++..||..+|+.+||. ..|..|+.-...+++|..|++|+++||+|+++. .+.+.|++++.+|.+.....||+-.|
T Consensus 343 ~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~V 422 (859)
T KOG1241|consen 343 AKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWV 422 (859)
T ss_pred HHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhh
Confidence 588999999999999995 567888887888889999999999999999987 46888999999999999999999999
Q ss_pred HHHHHHHHHHhccCChH--HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccC--------CchhhhHHHHHHHH
Q 003081 133 QDAMAHIWKSLVADPKR--TIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGR--------KFDQVGKHLRRIWT 202 (850)
Q Consensus 133 R~a~~~iw~~Lv~d~~~--~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~--------~~~~l~~~L~~i~~ 202 (850)
|+++.-.++.+....+. .-..|...+++.++.++.| ++||-..+|+|+-.|.++. ..+.+.|+++.|+.
T Consensus 423 kdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~ 501 (859)
T KOG1241|consen 423 KDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIG 501 (859)
T ss_pred cchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHH
Confidence 99875555555533222 2356789999999999988 7999999999999999632 12245589999999
Q ss_pred HHHHHhcc---CcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhc----------cCCC--chhHH
Q 003081 203 AAFRAMDD---IKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAE----------GILS--KVDSI 267 (850)
Q Consensus 203 ~l~~~ldD---~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~----------gL~s--~~~ev 267 (850)
.++++-|- .....|.+|..++..+.+.+...+. +++..+.++++.+ ++.+ ...++
T Consensus 502 ~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy----------~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eL 571 (859)
T KOG1241|consen 502 SLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVY----------PMVQKLTLVILEKLDQTISSQILSLADRAQLNEL 571 (859)
T ss_pred HHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHH----------HHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHH
Confidence 99998763 3456899999998888765543332 2333344443321 2222 23678
Q ss_pred HHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHH-H
Q 003081 268 SKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDL-C 346 (850)
Q Consensus 268 r~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~-~ 346 (850)
+...|.+|+.+.++.++.++++...||..|++.+.+....+ +.+|.+-.. +.+++.++. +
T Consensus 572 Qs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~------------v~e~a~laV-------~tl~~~Lg~~F 632 (859)
T KOG1241|consen 572 QSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAV------------VHEEAFLAV-------STLAESLGKGF 632 (859)
T ss_pred HHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCcccc------------chHHHHHHH-------HHHHHHHhHhH
Confidence 99999999999999999999999999999999998632221 112332111 112333332 2
Q ss_pred HhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHH
Q 003081 347 INVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACAS 426 (850)
Q Consensus 347 ~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~ 426 (850)
. ..|+.|.|.|...+++-..-++-..+.++++.|+..++.+|.||++.+|..|++.| .++.++|....++
T Consensus 633 ~-----kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~L---ss~~~hR~vKP~I-- 702 (859)
T KOG1241|consen 633 A-----KYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCL---SSPNLHRNVKPAI-- 702 (859)
T ss_pred H-----HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHc---cCccccccccchH--
Confidence 3 34789999999999765454555678889999999999999999999999999999 3555665544333
Q ss_pred HhhhCCHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhc---C-----CchH---HH
Q 003081 427 VLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRF---E-----DDKY---VS 495 (850)
Q Consensus 427 L~~~~~~~~v~~li~~l~~~~~~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~---d-----~~~~---v~ 495 (850)
..+.+-|+-..+..|.+|+..++|++..+.+ | ..++ +|
T Consensus 703 -------------------------------lS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LR 751 (859)
T KOG1241|consen 703 -------------------------------LSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELR 751 (859)
T ss_pred -------------------------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHH
Confidence 1122334444488999999999999876652 1 1223 56
Q ss_pred HHHHHHHHHhcCCCh-----hhHHhhHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHHHHHhCcchhh
Q 003081 496 DLFEELWEENTSGDR-----VTLQLYLGEIVSLICEGIASS--SWSSKRKSAKAICKLGEILGESLSN 556 (850)
Q Consensus 496 ~~~~~v~~~l~~~~~-----~~i~~yl~eIl~ll~~~L~d~--s~~vr~~aa~alg~la~~~g~~l~~ 556 (850)
+...+.+..+..|.+ ..++||+++|++++.+.-.++ +..+-..|+..|||||..+|..+.+
T Consensus 752 e~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~ 819 (859)
T KOG1241|consen 752 EGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIK 819 (859)
T ss_pred HHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhh
Confidence 655666666665543 256799999999999886665 3578888999999999999977654
No 6
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.6e-21 Score=226.26 Aligned_cols=496 Identities=14% Similarity=0.137 Sum_probs=355.4
Q ss_pred hhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCC-ch
Q 003081 113 HLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRK-FD 191 (850)
Q Consensus 113 ~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~-~~ 191 (850)
.-++++|.|+.+..+||+..|+++..|+..+..........|++.+++-+.++|+|++-.||.+|..|++.++.-.+ -.
T Consensus 115 ~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~ 194 (1075)
T KOG2171|consen 115 KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNK 194 (1075)
T ss_pred chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccch
Confidence 46789999999999999999999999999988665556677999999999999999998899999999999987653 23
Q ss_pred hhhHHHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhh-ccCCCchhH
Q 003081 192 QVGKHLRRIWTAAFRAMD----DIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLA-EGILSKVDS 266 (850)
Q Consensus 192 ~l~~~L~~i~~~l~~~ld----D~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~-~gL~s~~~e 266 (850)
...+++..++|.++.+++ +-+..+ |..++..+..++ + ..+....+++..++.+-++ -+-.+-.+.
T Consensus 195 ~~~~~~~~llP~~l~vl~~~i~~~d~~~---a~~~l~~l~El~----e---~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~ 264 (1075)
T KOG2171|consen 195 SEVDKFRDLLPSLLNVLQEVIQDGDDDA---AKSALEALIELL----E---SEPKLLRPHLSQIIQFSLEIAKNKELENS 264 (1075)
T ss_pred HHHHHHHHHhHHHHHHhHhhhhccchHH---HHHHHHHHHHHH----h---hchHHHHHHHHHHHHHHHHHhhcccccHH
Confidence 455667777777776664 333322 333344443332 1 1112244577777777663 111122468
Q ss_pred HHHHHHHHHHHHHHhcC---cccccchHHHHHHHHHhccccchhhhhHHHHh-hhhcccchhhhHHHHHhhccCCcHHHH
Q 003081 267 ISKASIGVVMKLVKGAG---IAIRPHLSDLVSCMLESLSSLEDQGLNYIELH-AANAGIQTEKLENLRISIAKGSPMWDT 342 (850)
Q Consensus 267 vr~~a~~~L~~la~~~g---~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~-a~~~~~~~d~id~~r~~~~~~s~l~ea 342 (850)
+|..++.++.-+++.+. +...+|.++|+|.++..+-..+.+ -.|. ++.. ++|+-+ ...+.-.++
T Consensus 265 ~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D----~ew~~~d~~--ded~~~------~~~~~A~~~ 332 (1075)
T KOG2171|consen 265 IRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDD----DEWSNEDDL--DEDDEE------TPYRAAEQA 332 (1075)
T ss_pred HHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccc----hhhcccccc--cccccc------CcHHHHHHH
Confidence 99999999999998843 456779999999999998765433 1121 1111 111101 011112346
Q ss_pred HHHHHhhcChh-hHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHH
Q 003081 343 LDLCINVVDTE-SLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFA 421 (850)
Q Consensus 343 l~~~~~~ld~~-~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a 421 (850)
++.+...++.+ +++.+++.+...+++. .|.-|-++.-.|+.++.=++..+.+.++++++..++++ +|+.+.||-+++
T Consensus 333 lDrlA~~L~g~~v~p~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l-~DphprVr~AA~ 410 (1075)
T KOG2171|consen 333 LDRLALHLGGKQVLPPLFEALEAMLQST-EWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGL-NDPHPRVRYAAL 410 (1075)
T ss_pred HHHHHhcCChhhehHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHH
Confidence 66666666644 5688999999999886 78889999999999999899999999999999999999 899999999999
Q ss_pred HHHHHHhhh-------------------------------------------CCHHHHHHHHHHHHH-hh---c--CCch
Q 003081 422 SACASVLKY-------------------------------------------ATPSQAQKLIEETAA-LH---I--DDKN 452 (850)
Q Consensus 422 ~alg~L~~~-------------------------------------------~~~~~v~~li~~l~~-~~---~--~d~~ 452 (850)
.|+|.+..- ++.+.+.+|++.+.+ ++ . +.+.
T Consensus 411 naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~ 490 (1075)
T KOG2171|consen 411 NAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPY 490 (1075)
T ss_pred HHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchh
Confidence 999985432 222334555555554 22 1 1234
Q ss_pred hhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcC-CchHHHHHHHH---HHHHhcCCC-hhhHHhhHHHHHHHHHHh
Q 003081 453 SQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFE-DDKYVSDLFEE---LWEENTSGD-RVTLQLYLGEIVSLICEG 527 (850)
Q Consensus 453 ~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d-~~~~v~~~~~~---v~~~l~~~~-~~~i~~yl~eIl~ll~~~ 527 (850)
.+..+..+|++++..+++.|.+|++.++|.+....+. .+++.|....+ ..+.+.... +..+.++..++++++...
T Consensus 491 v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~ 570 (1075)
T KOG2171|consen 491 VQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLEL 570 (1075)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhh
Confidence 5778888999999999999999999999998765544 33555544433 333333322 245778899999998887
Q ss_pred ---hcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCC------------------Chh-----------
Q 003081 528 ---IASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGR------------------LWE----------- 575 (850)
Q Consensus 528 ---L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r------------------~~~----------- 575 (850)
..+.+...|.......+.+|+.+|++|.||++.+||.+.....-+ .|+
T Consensus 571 ~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~ 650 (1075)
T KOG2171|consen 571 QGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIG 650 (1075)
T ss_pred cccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeee
Confidence 455667788999999999999999999999999999998776432 121
Q ss_pred -------hHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHc
Q 003081 576 -------GKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACR-KKIKKYREAAFSCLEQVIKAF 636 (850)
Q Consensus 576 -------gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~-r~~~~~R~~Al~~Lg~l~~~~ 636 (850)
-|+...++|+.++...+..+ .||+.++++..+--++ .-...||++|+.+++.++.+.
T Consensus 651 I~Tsvl~eK~~A~~~Lv~~a~~lk~~F----~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~ 715 (1075)
T KOG2171|consen 651 IRTSVLDEKETACEALGEYAKELKEAF----APYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCA 715 (1075)
T ss_pred eeehhHHHHHHHHHHHHHHHHhhhhhh----hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 18999999999998777644 4677777773333222 345789999999988877664
No 7
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.6e-20 Score=207.42 Aligned_cols=497 Identities=17% Similarity=0.229 Sum_probs=348.8
Q ss_pred HHHHhccchhhhhhhhHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCC--hHHHHH---
Q 003081 79 FMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADP--KRTIDE--- 153 (850)
Q Consensus 79 fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~--~~~i~~--- 153 (850)
+..+++.. ...-|+-..-||.-+++--.+.+.|||+.++...+....|++.+|.-.+|.-|-+++..| +.++..
T Consensus 220 lFalanD~-~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~ 298 (885)
T KOG2023|consen 220 LFALANDE-DPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLD 298 (885)
T ss_pred HHHHccCC-CHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHH
Confidence 34456443 467888888999999998889999999999999999999999999999999999998642 122222
Q ss_pred --------------------------------------------------------------------------------
Q 003081 154 -------------------------------------------------------------------------------- 153 (850)
Q Consensus 154 -------------------------------------------------------------------------------- 153 (850)
T Consensus 299 kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAa 378 (885)
T KOG2023|consen 299 KLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAA 378 (885)
T ss_pred HHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHH
Confidence
Q ss_pred -----------HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHH
Q 003081 154 -----------HLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKL 222 (850)
Q Consensus 154 -----------~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~ 222 (850)
.++.+||.|-..+.+.+|.|||++..|+|.+.+|+- .-+.+||++++|.+++.|+|.++-||.- +
T Consensus 379 LDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM-~g~~p~LpeLip~l~~~L~DKkplVRsI---T 454 (885)
T KOG2023|consen 379 LDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCM-QGFVPHLPELIPFLLSLLDDKKPLVRSI---T 454 (885)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHh-hhcccchHHHHHHHHHHhccCccceeee---e
Confidence 235566666666777899999999999999999864 5688999999999999999999999985 4
Q ss_pred HHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhcc
Q 003081 223 CRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLS 302 (850)
Q Consensus 223 ~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls 302 (850)
||+|++..--....+ ..+++..+|.-|+ +-+.+++..|++.||.++..+-+.+|..|-||+..|+..|.-+++
T Consensus 455 CWTLsRys~wv~~~~------~~~~f~pvL~~ll-~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~ 527 (885)
T KOG2023|consen 455 CWTLSRYSKWVVQDS------RDEYFKPVLEGLL-RRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFG 527 (885)
T ss_pred eeeHhhhhhhHhcCC------hHhhhHHHHHHHH-HHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 788765432222111 2235554554445 346678899999999999999999999999999999999998886
Q ss_pred ccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhc----Ch-hhHhhHHHHHHHHHhccCCCchHh-
Q 003081 303 SLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVV----DT-ESLDQLVPHLARLVRSGIGLNTRV- 376 (850)
Q Consensus 303 ~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~l----d~-~~l~~lvp~L~~~lk~~~~~~tr~- 376 (850)
- |...|.- -+.+|++.+.+++ +. ..++-++|.|++-...- ....|-
T Consensus 528 k-------YQ~KNLl--------------------ILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~l-sd~DKdL 579 (885)
T KOG2023|consen 528 K-------YQKKNLL--------------------ILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELL-SDSDKDL 579 (885)
T ss_pred H-------Hhhccee--------------------hHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhc-CcccchH
Confidence 2 2222210 1345555554443 22 24777888877654321 111222
Q ss_pred -hHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhcCCchhhH
Q 003081 377 -GVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQI 455 (850)
Q Consensus 377 -~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~~d~~~r~ 455 (850)
--...++.++..++..|.||++...+.++..+ ... + ..+.+...++... ..|.+.-.
T Consensus 580 fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il-~~t---~--------q~~~~~~~~~~~~----------~pdkdfiI 637 (885)
T KOG2023|consen 580 FPLLECLSSIASALGVGFLPYAQPVYQRCFRIL-QKT---L--------QLLAKVQQDPTVE----------APDKDFII 637 (885)
T ss_pred HHHHHHHHHHHHHHhccccccCHHHHHHHHHHH-HHH---H--------HHHHhccCCcccc----------CCCcceEE
Confidence 34556677788899999999999988888877 211 1 1111111111100 01223334
Q ss_pred HHHHHHHHHHhhchhhhhhhH--hhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCCCH
Q 003081 456 SCAILLKSYSSVASDVLSGYH--AVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSW 533 (850)
Q Consensus 456 ~~~~~l~al~~~~~~~f~~~~--~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~ 533 (850)
++.+++..++...+.+..+.. ..++.+++.++.|..++||+....++++++..+...+.+|+..+++++...+....-
T Consensus 638 ~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~i 717 (885)
T KOG2023|consen 638 VSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENI 717 (885)
T ss_pred EeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhc
Confidence 556777777766666555433 347778889999999999999889999999988889999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCC--hhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHH
Q 003081 534 SSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRL--WEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVS 611 (850)
Q Consensus 534 ~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~--~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~ 611 (850)
++--.|.-++|.++.++|....+++..++.-|...++... -..-|..--++|.+..-|.+.+ .|+.+..++.-.
T Consensus 718 sv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~v----Ap~l~~f~~pWc 793 (885)
T KOG2023|consen 718 SVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEV----APHLDSFMRPWC 793 (885)
T ss_pred hHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhc----chhHHHHHHHHH
Confidence 8999999999999999999999998888888887775332 2233444445555554444332 345555544333
Q ss_pred HHHhh-cCHHHHHHHHHHHHHHHHHcCCchh
Q 003081 612 SACRK-KIKKYREAAFSCLEQVIKAFRDPKF 641 (850)
Q Consensus 612 ~e~~r-~~~~~R~~Al~~Lg~l~~~~~~~~~ 641 (850)
..++. .+..-+..|++-+..++..-|..-.
T Consensus 794 ~sl~~i~DneEK~sAFrG~c~mi~vNp~~vv 824 (885)
T KOG2023|consen 794 TSLRNIDDNEEKESAFRGLCNMINVNPSGVV 824 (885)
T ss_pred HHhcccccchhHHHHHHHHHHheeeCchhhh
Confidence 22221 2345578899888888877665433
No 8
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.90 E-value=9.5e-20 Score=198.04 Aligned_cols=524 Identities=13% Similarity=0.160 Sum_probs=346.2
Q ss_pred ccc--CCcccccCCCC-ccchHHHHHH----HhhhcCCchHHHHHHHHhccchhhh----hhhhHHh-hHHHHHHHhhhh
Q 003081 42 VFQ--EGAIGEGLGGG-KLSTYKELCN----LANEMGQPDLIYKFMDLANYQVSLN----SKRGAAF-GFSKIAKQAGDA 109 (850)
Q Consensus 42 lf~--~g~~~~~~~g~-~~styk~l~~----lA~~~g~p~lv~~fm~la~~~~~w~----sr~gAa~-gl~~I~~~~~~~ 109 (850)
||+ .|++.+.|+.. -+++.++|.. +-+.+....=..-||+..=. .|+ +-..|+| .|.+|+.-.-+.
T Consensus 178 l~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvce--atq~~d~e~q~aafgCl~kim~LyY~f 255 (858)
T COG5215 178 LFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCE--ATQGNDEELQHAAFGCLNKIMMLYYKF 255 (858)
T ss_pred HHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeeh--hccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 677 78887654433 2455554433 33344445555667765421 132 2234555 468998888888
Q ss_pred hchhhhhHHH-HHHhhcCCCCHhHHHHHHHHHHHhccCCh-------------------------H--------------
Q 003081 110 LKPHLRLLIP-KLVRFQYDPDKNVQDAMAHIWKSLVADPK-------------------------R-------------- 149 (850)
Q Consensus 110 l~p~L~~lvp-~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~-------------------------~-------------- 149 (850)
|.||+.+.+- -+-|+++.||..|.-.+..-|..+....- +
T Consensus 256 m~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~e 335 (858)
T COG5215 256 MQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGE 335 (858)
T ss_pred HHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCC
Confidence 9999875544 44588999999999998888976653200 0
Q ss_pred -----------------------HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHH
Q 003081 150 -----------------------TIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFR 206 (850)
Q Consensus 150 -----------------------~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~ 206 (850)
.-++.+.+++.++-+++.+++|+-|+++..|||.++.|+....+.++.++.+|.+..
T Consensus 336 d~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n 415 (858)
T COG5215 336 DYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIEN 415 (858)
T ss_pred CccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHH
Confidence 012234567777778888999999999999999999999999999999999999999
Q ss_pred HhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcC---
Q 003081 207 AMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAG--- 283 (850)
Q Consensus 207 ~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g--- 283 (850)
.|.|.--.|.+.+.-....++..+...++|. ..+.......+ .|+.+ .+.+...+.+...+++....
T Consensus 416 ~m~D~~l~vk~ttAwc~g~iad~va~~i~p~--------~Hl~~~vsa~l-iGl~D-~p~~~~ncsw~~~nlv~h~a~a~ 485 (858)
T COG5215 416 EMSDSCLWVKSTTAWCFGAIADHVAMIISPC--------GHLVLEVSASL-IGLMD-CPFRSINCSWRKENLVDHIAKAV 485 (858)
T ss_pred hcccceeehhhHHHHHHHHHHHHHHHhcCcc--------ccccHHHHHHH-hhhhc-cchHHhhhHHHHHhHHHhhhhhh
Confidence 9999888887765433333333333333322 01111122222 36654 45555566677766665533
Q ss_pred ----cccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhh--
Q 003081 284 ----IAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQ-- 357 (850)
Q Consensus 284 ----~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~-- 357 (850)
.-+.||.+.|+..|+...... .|- ...|.+. .+++..++.+..+.+.+-
T Consensus 486 ~~~~S~l~~fY~ai~~~Lv~~t~~~----~Ne---------------~n~R~s~------fsaLgtli~~~~d~V~~~~a 540 (858)
T COG5215 486 REVESFLAKFYLAILNALVKGTELA----LNE---------------SNLRVSL------FSALGTLILICPDAVSDILA 540 (858)
T ss_pred ccccchhHHHHHHHHHHHHHHHHhh----ccc---------------hhHHHHH------HHHHHHHHhhcchhHHHHHH
Confidence 446677777777776554311 111 1122221 233443333322221111
Q ss_pred -----HHHHHHHHHhcc---CCCc-------hHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHH
Q 003081 358 -----LVPHLARLVRSG---IGLN-------TRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFAS 422 (850)
Q Consensus 358 -----lvp~L~~~lk~~---~~~~-------tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~ 422 (850)
...+|.+.+.-. .... ....-+.++..++.+.+.++.|..+.+|..+++.+ +...+++-
T Consensus 541 ~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~l-es~~~t~~----- 614 (858)
T COG5215 541 GFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRIL-ESTKPTTA----- 614 (858)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH-hccCCchh-----
Confidence 111111111100 0000 11134667777788888899999999999999888 32322211
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHH
Q 003081 423 ACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELW 502 (850)
Q Consensus 423 alg~L~~~~~~~~v~~li~~l~~~~~~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~ 502 (850)
.| -+-.++++++...++.|..|.+.|+|++..+++..|..|.....++.
T Consensus 615 -~~------------------------------dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglv 663 (858)
T COG5215 615 -FG------------------------------DVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLV 663 (858)
T ss_pred -hh------------------------------HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHH
Confidence 11 12345567777778999999999999999999888888999989999
Q ss_pred HHhcCCChhhHHhhHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCh------
Q 003081 503 EENTSGDRVTLQLYLGEIVSLICEGIASS--SWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLW------ 574 (850)
Q Consensus 503 ~~l~~~~~~~i~~yl~eIl~ll~~~L~d~--s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~------ 574 (850)
.++....+..+.+|.+.++..+.++++++ ..++|.....++|+++..+|..|.+|++.+|-.+.++-.-+..
T Consensus 664 gdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~~~~~ 743 (858)
T COG5215 664 GDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSDEVYV 743 (858)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCceeH
Confidence 99999888889999999999999999987 5789999999999999999999999999999999888753321
Q ss_pred -----hhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhc--CHHHHHHHHHHHHHHHHHcCCch
Q 003081 575 -----EGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKK--IKKYREAAFSCLEQVIKAFRDPK 640 (850)
Q Consensus 575 -----~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~--~~~~R~~Al~~Lg~l~~~~~~~~ 640 (850)
..++.+..|++++..+.++.... -.|++..|...+---+.+. +++-.++|+..+|+++..||..+
T Consensus 744 ~dy~~~~~~~v~~ayVgI~~~~~nr~~~-v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~mfpkge 815 (858)
T COG5215 744 DDYRKNAVQLVNCAYVGIGDSSKNRVRS-VLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFPKGE 815 (858)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHH-hhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhCCCcc
Confidence 23788889999998877644321 2466677765554222232 35556899999999999999764
No 9
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.86 E-value=2e-17 Score=188.94 Aligned_cols=300 Identities=15% Similarity=0.170 Sum_probs=245.2
Q ss_pred hHhhHHHHHHHHHhccCC-CchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCC
Q 003081 354 SLDQLVPHLARLVRSGIG-LNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYAT 432 (850)
Q Consensus 354 ~l~~lvp~L~~~lk~~~~-~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~ 432 (850)
+++.+.|.+.+.+-..-. ...|+.++..+..+..++|.-+.+|...++..++..+ ......||+.++.++|++...++
T Consensus 128 V~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql-~s~R~aVrKkai~~l~~la~~~~ 206 (1233)
T KOG1824|consen 128 VCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQL-QSPRLAVRKKAITALGHLASSCN 206 (1233)
T ss_pred HHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcc-cChHHHHHHHHHHHHHHHHHhcC
Confidence 345566666655533211 2367889999999999999999999999999999999 67788999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcC--CchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHh---cCCchHHHHHHHHHHHHhcC
Q 003081 433 PSQAQKLIEETAALHID--DKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISR---FEDDKYVSDLFEELWEENTS 507 (850)
Q Consensus 433 ~~~v~~li~~l~~~~~~--d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~---~d~~~~v~~~~~~v~~~l~~ 507 (850)
.+....+++.+.+.+.. ....-.+-.++++++++.+|..|..|.+.++|++.... ..+++++|+...+.++.+..
T Consensus 207 ~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~ 286 (1233)
T KOG1824|consen 207 RDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLR 286 (1233)
T ss_pred HHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHH
Confidence 99999999998887752 22223355688999999999999999999999998766 45677899999898888887
Q ss_pred CChhhHHhhHHHHHHHHHHhhc----------------------------------CCCHHHHHHHHHHHHHHHHHhCcc
Q 003081 508 GDRVTLQLYLGEIVSLICEGIA----------------------------------SSSWSSKRKSAKAICKLGEILGES 553 (850)
Q Consensus 508 ~~~~~i~~yl~eIl~ll~~~L~----------------------------------d~s~~vr~~aa~alg~la~~~g~~ 553 (850)
.++..+-+|.++|.+++..+++ |-+|.||++||+++..++..-.+.
T Consensus 287 rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~ 366 (1233)
T KOG1824|consen 287 RCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEM 366 (1233)
T ss_pred hChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHH
Confidence 7778899999999999998874 347999999999999999887777
Q ss_pred hhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccc---------cCCC--------CchHHHHHHHHHHHhh
Q 003081 554 LSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDIS---------AEDP--------TTPFAIVDMVSSACRK 616 (850)
Q Consensus 554 l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~---------~~~~--------~~~~~i~~~l~~e~~r 616 (850)
+..+++.+-|.++..+++|+.++|..+++++..+....+.... ..++ ...+.|++++.++.+.
T Consensus 367 L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ 446 (1233)
T KOG1824|consen 367 LPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLRE 446 (1233)
T ss_pred HHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhh
Confidence 7778999999999999999999999999999999887653221 1112 2456778899999998
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCc---hhHHhHHHHHHhhcc
Q 003081 617 KIKKYREAAFSCLEQVIKAFRDP---KFFNIIFPLLFEMCG 654 (850)
Q Consensus 617 ~~~~~R~~Al~~Lg~l~~~~~~~---~~~~iv~~~l~~~~~ 654 (850)
+..+.|..++..|..++.++|+. .+..++..++..+.|
T Consensus 447 ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~D 487 (1233)
T KOG1824|consen 447 KSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLND 487 (1233)
T ss_pred ccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCC
Confidence 88889999999999999999863 456666666666654
No 10
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.84 E-value=4.4e-18 Score=185.20 Aligned_cols=432 Identities=14% Similarity=0.121 Sum_probs=308.9
Q ss_pred ccchHHHHHHHhhhcCCc--hHHHHHHHHhccchhhhhhhhHHhhHHHHHHHh-hhhhchhhhhHHHHHHhhcCCCCHhH
Q 003081 56 KLSTYKELCNLANEMGQP--DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQA-GDALKPHLRLLIPKLVRFQYDPDKNV 132 (850)
Q Consensus 56 ~~styk~l~~lA~~~g~p--~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~-~~~l~p~L~~lvp~L~r~~~Dp~~~V 132 (850)
++++..||...|+..||. ..|..|+.....+..|..|++|+++||+|+.+. .+.+.|++++.+|.+...+.||.--|
T Consensus 345 smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~v 424 (858)
T COG5215 345 SMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWV 424 (858)
T ss_pred hhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeeh
Confidence 799999999999999996 569999999998889999999999999999886 46788999999999999999999999
Q ss_pred HHHHHHHHHHhccCChHHH--HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCC------chhhhHHHHHHHHHH
Q 003081 133 QDAMAHIWKSLVADPKRTI--DEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRK------FDQVGKHLRRIWTAA 204 (850)
Q Consensus 133 R~a~~~iw~~Lv~d~~~~i--~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~------~~~l~~~L~~i~~~l 204 (850)
...+.-+++++...-+..+ ..|+......++.++.| ++++--.+|+++-+|+.+.+ ...+.++++.|+..+
T Consensus 425 k~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~L 503 (858)
T COG5215 425 KSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNAL 503 (858)
T ss_pred hhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHH
Confidence 9999888888875433333 45788889999999988 57888899999999987432 234778889999888
Q ss_pred HHHhc--cCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhh--------cc----CCC--chhHHH
Q 003081 205 FRAMD--DIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLA--------EG----ILS--KVDSIS 268 (850)
Q Consensus 205 ~~~ld--D~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~--------~g----L~s--~~~evr 268 (850)
.+.-+ +.....|.++.+++.++..++..... +++..+..+.+. .| +.+ ..+|++
T Consensus 504 v~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~----------~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elq 573 (858)
T COG5215 504 VKGTELALNESNLRVSLFSALGTLILICPDAVS----------DILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQ 573 (858)
T ss_pred HHHHHhhccchhHHHHHHHHHHHHHhhcchhHH----------HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 87754 55567899998888877655432221 122212221111 01 112 257899
Q ss_pred HHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHh
Q 003081 269 KASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCIN 348 (850)
Q Consensus 269 ~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~ 348 (850)
..-+..|..|+.+.++.+.|.-++||..+++.|.+.+|...- +|..-.. |.++..++.
T Consensus 574 SN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~------------~dV~~aI-------sal~~sl~e--- 631 (858)
T COG5215 574 SNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAF------------GDVYTAI-------SALSTSLEE--- 631 (858)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhh------------hHHHHHH-------HHHHHHHHH---
Confidence 999999999999999999999999999999999876554320 1211110 112222321
Q ss_pred hcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHh
Q 003081 349 VVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVL 428 (850)
Q Consensus 349 ~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~ 428 (850)
-.+...+.++|.+.+.++. .+-+.-..+.++++.|+..++.+|.+|++.++..|.+.+ .++..++....++-
T Consensus 632 -~Fe~y~~~fiPyl~~aln~-~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~l---ss~~~~R~lKPaiL--- 703 (858)
T COG5215 632 -RFEQYASKFIPYLTRALNC-TDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCL---SSEATHRDLKPAIL--- 703 (858)
T ss_pred -HHHHHHhhhhHHHHHHhcc-hhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh---cChhhccccchHHH---
Confidence 1123467899999999954 344555678899999999999999999999999999999 35556666554442
Q ss_pred hhCCHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhc-C-------CchHH---HHH
Q 003081 429 KYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRF-E-------DDKYV---SDL 497 (850)
Q Consensus 429 ~~~~~~~v~~li~~l~~~~~~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~-d-------~~~~v---~~~ 497 (850)
.+.+-|+-..+..|.+|++.++-++..+.. + .+++. +..
T Consensus 704 ------------------------------SvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~~~~~~dy~~~~~~~ 753 (858)
T COG5215 704 ------------------------------SVFGDIALAIGANFESYLDMIMMLFQQASELDPHSDEVYVDDYRKNAVQL 753 (858)
T ss_pred ------------------------------HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCceeHHHHHHHHHHH
Confidence 222444444577899999988866544332 1 12222 222
Q ss_pred HHHHHHHhcCCCh---hhHHhhHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHHHHhCcc-hhhhH
Q 003081 498 FEELWEENTSGDR---VTLQLYLGEIVSLICEGIASSS--WSSKRKSAKAICKLGEILGES-LSNYH 558 (850)
Q Consensus 498 ~~~v~~~l~~~~~---~~i~~yl~eIl~ll~~~L~d~s--~~vr~~aa~alg~la~~~g~~-l~~~l 558 (850)
..+.+-.+..+.. ..+.||+-.|...+-..-.||+ .+.-+.+...+|+++..+|.. +..++
T Consensus 754 v~~ayVgI~~~~~nr~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~mfpkgelk~~~ 820 (858)
T COG5215 754 VNCAYVGIGDSSKNRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFPKGELKFGL 820 (858)
T ss_pred HHHHHHHhhhhhhhhHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhCCCcchhhcc
Confidence 2233333333332 4577999999998887777875 455577888999999988753 44333
No 11
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.83 E-value=4.9e-16 Score=177.72 Aligned_cols=507 Identities=16% Similarity=0.171 Sum_probs=336.0
Q ss_pred chHHHHHHHhhhcCCchHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHH
Q 003081 58 STYKELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMA 137 (850)
Q Consensus 58 styk~l~~lA~~~g~p~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~ 137 (850)
++|..=.+|-.-|..+|=-++||....-....+ ++.. ...+..++. .+..|++...|.|+.||+-+.
T Consensus 2 a~~~~~i~LlekmtssDKDfRfMAtsDLm~eLq--kdsi--------~Ld~dSe~k---vv~~lLklL~D~ngEVQnlAV 68 (1233)
T KOG1824|consen 2 ASMQVGINLLEKMTSSDKDFRFMATSDLMTELQ--KDSI--------KLDDDSERK---VVKMLLKLLEDKNGEVQNLAV 68 (1233)
T ss_pred chhHHHHHHHHHccCCCcchhhhhHHHHHHHHH--hhhh--------hccccchhH---HHHHHHHHHhccCcHHHHHHH
Confidence 344443466677788888899997765433222 2211 122233344 555566668999999999999
Q ss_pred HHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchh---h-hHHHHHHHHHHHHHh---cc
Q 003081 138 HIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQ---V-GKHLRRIWTAAFRAM---DD 210 (850)
Q Consensus 138 ~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~---l-~~~L~~i~~~l~~~l---dD 210 (850)
+|.+.|++ ++-+.+++.+++.|..++-+..-..|.-+..++-..+...++.. + ...++.+.+.+.... .|
T Consensus 69 KClg~lvs---Kvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~ 145 (1233)
T KOG1824|consen 69 KCLGPLVS---KVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQED 145 (1233)
T ss_pred HHHHHHHh---hchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhccc
Confidence 99999984 46677899999999999766666778888888877766544311 1 122333333333222 11
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccch
Q 003081 211 IKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHL 290 (850)
Q Consensus 211 ~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~l 290 (850)
. ..+|-. .+.-++.++.|.-+- -++ +-..++-+++. .+.+.-..||+-++.+++.++..++.. -.
T Consensus 146 ~-sai~~e---~lDil~d~lsr~g~l---l~~----fh~~il~~l~~-ql~s~R~aVrKkai~~l~~la~~~~~~---ly 210 (1233)
T KOG1824|consen 146 V-SAIKCE---VLDILADVLSRFGTL---LPN----FHLSILKCLLP-QLQSPRLAVRKKAITALGHLASSCNRD---LY 210 (1233)
T ss_pred c-hhhHHH---HHHHHHHHHHhhccc---Ccc----hHHHHHHHHhh-cccChHHHHHHHHHHHHHHHHHhcCHH---HH
Confidence 1 112221 223333333222110 011 22334444442 355666789999999999999988764 34
Q ss_pred HHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcC---hhhHhhHHHHHHHHHh
Q 003081 291 SDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVD---TESLDQLVPHLARLVR 367 (850)
Q Consensus 291 p~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld---~~~l~~lvp~L~~~lk 367 (850)
..++..|+.-|+.. ......|..+ ..+..+.+..+ ...++.++|.+.+..+
T Consensus 211 ~~li~~Ll~~L~~~-------------------~q~~~~rt~I-------q~l~~i~r~ag~r~~~h~~~ivp~v~~y~~ 264 (1233)
T KOG1824|consen 211 VELIEHLLKGLSNR-------------------TQMSATRTYI-------QCLAAICRQAGHRFGSHLDKIVPLVADYCN 264 (1233)
T ss_pred HHHHHHHHhccCCC-------------------CchHHHHHHH-------HHHHHHHHHhcchhhcccchhhHHHHHHhc
Confidence 56788888777632 1112223211 23333333333 3457889999999884
Q ss_pred cc--CCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHH--
Q 003081 368 SG--IGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEET-- 443 (850)
Q Consensus 368 ~~--~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l-- 443 (850)
.. .+..-|..|.+++..+..+++.++-||.+.+++.+++++..|+|..-- ..++......+..
T Consensus 265 ~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd-------------~~eDed~~~~ed~eD 331 (1233)
T KOG1824|consen 265 KIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYD-------------TEEDEDAMFLEDEED 331 (1233)
T ss_pred ccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCC-------------Cccchhhhhhhcccc
Confidence 32 134468899999999999999999999999999999999778873211 0011111111110
Q ss_pred ---HHhhcCCch----hhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhc----------
Q 003081 444 ---AALHIDDKN----SQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENT---------- 506 (850)
Q Consensus 444 ---~~~~~~d~~----~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~---------- 506 (850)
.+.|++|++ .|++++.++.++.....+.+..++..+-|.+..--.+.+++|+.-..+++..+.
T Consensus 332 de~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~ 411 (1233)
T KOG1824|consen 332 DEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVL 411 (1233)
T ss_pred chhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccc
Confidence 234554433 388999999999888888888888888888643333556667643333322111
Q ss_pred --------CCCh---hhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCC--
Q 003081 507 --------SGDR---VTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRL-- 573 (850)
Q Consensus 507 --------~~~~---~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~-- 573 (850)
+|.+ ..++.-.+-|+..+.+.+.+.+...|+.+...+..++.++++.+.+|++.++|.++.+|++++
T Consensus 412 ~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSss 491 (1233)
T KOG1824|consen 412 ADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSS 491 (1233)
T ss_pred cCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccch
Confidence 1222 234555677888888888888888999999999999999999999999999999999998875
Q ss_pred hhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcC
Q 003081 574 WEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFR 637 (850)
Q Consensus 574 ~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~ 637 (850)
..+|...|..+..+..+++-. ..+|+.+.+.+.+.....++.+++-.+|+..+++++++++
T Consensus 492 s~~ki~~L~fl~~~L~s~~p~---~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvir 552 (1233)
T KOG1824|consen 492 SNLKIDALVFLYSALISHPPE---VFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIR 552 (1233)
T ss_pred HHHHHHHHHHHHHHHhcCChh---hcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhc
Confidence 667877777776666554421 2568899999999999999999999999999999999985
No 12
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=3.7e-16 Score=174.90 Aligned_cols=360 Identities=18% Similarity=0.165 Sum_probs=256.9
Q ss_pred hhhhhhHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCC
Q 003081 89 LNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGS 168 (850)
Q Consensus 89 w~sr~gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~ 168 (850)
...|+++.++|...+...|...+||+..++|.++..++|..+.||+++..+.++++.-. -..-.+.+++.++.++.+
T Consensus 189 ~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~---~~~aVK~llpsll~~l~~ 265 (569)
T KOG1242|consen 189 ALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCL---SAYAVKLLLPSLLGSLLE 265 (569)
T ss_pred hhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhc---CcchhhHhhhhhHHHHHH
Confidence 35566899999999998999999999999999999999999999999999888887421 122357778888888877
Q ss_pred CChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHH
Q 003081 169 RLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSM 248 (850)
Q Consensus 169 ~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l 248 (850)
..||...++...++.+... .+.+++-++++++|.+..+|-|.|+.||+++...+..++.+. +. .-+
T Consensus 266 ~kWrtK~aslellg~m~~~-ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svi----dN---------~dI 331 (569)
T KOG1242|consen 266 AKWRTKMASLELLGAMADC-APKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI----DN---------PDI 331 (569)
T ss_pred HhhhhHHHHHHHHHHHHHh-chHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh----cc---------HHH
Confidence 7999999999999966554 457899999999999999999999999999987777665442 21 124
Q ss_pred HHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHH
Q 003081 249 DIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLEN 328 (850)
Q Consensus 249 ~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~ 328 (850)
..++|.|++ ++.++...+. .+++.|+.
T Consensus 332 ~~~ip~Lld-~l~dp~~~~~-e~~~~L~~--------------------------------------------------- 358 (569)
T KOG1242|consen 332 QKIIPTLLD-ALADPSCYTP-ECLDSLGA--------------------------------------------------- 358 (569)
T ss_pred HHHHHHHHH-HhcCcccchH-HHHHhhcc---------------------------------------------------
Confidence 556777663 5554332211 11111100
Q ss_pred HHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHh--cccccchHHHHHHHHHH
Q 003081 329 LRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKI--GMDIKPYTSMLLRLLFP 406 (850)
Q Consensus 329 ~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~--~~~~~py~~~lL~~Ll~ 406 (850)
..++.+++...+.-++|.|.+.+... +-.+|..++.++..++.-. +..+.||++.+++.+-.
T Consensus 359 ---------------ttFV~~V~~psLalmvpiL~R~l~eR-st~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~ 422 (569)
T KOG1242|consen 359 ---------------TTFVAEVDAPSLALMVPILKRGLAER-STSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKE 422 (569)
T ss_pred ---------------eeeeeeecchhHHHHHHHHHHHHhhc-cchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHH
Confidence 12355667777788889888888653 4566778888888887766 67899999999999999
Q ss_pred hhhhcCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhcCC--chhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHH
Q 003081 407 VVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDD--KNSQISCAILLKSYSSVASDVLSGYHAVIVPVIF 484 (850)
Q Consensus 407 ~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~~d--~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~ 484 (850)
.+ .|.-+.||..++.|+|.+.+..+.......++.+.+....+ ...|..+++.+..+.+..+. .+...++|-+.
T Consensus 423 ~~-~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v---~~~~~~~~~~~ 498 (569)
T KOG1242|consen 423 NL-DDAVPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGV---EKVEDILPEIL 498 (569)
T ss_pred Hh-cCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccc---hHHHHHHHHHH
Confidence 99 78899999999999999998877666655566665554322 12355666666666554443 55666777665
Q ss_pred HHhc--CCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCCCHHHHHH
Q 003081 485 ISRF--EDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRK 538 (850)
Q Consensus 485 ~~~~--d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~ 538 (850)
.... ..++.++.-+..+..-+....+...++|+.+|++.+.+.+.|.+...+..
T Consensus 499 a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~ 554 (569)
T KOG1242|consen 499 ANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDT 554 (569)
T ss_pred HHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccc
Confidence 4432 23444555433333222222234567999999999999988877655554
No 13
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.68 E-value=4.7e-12 Score=142.06 Aligned_cols=591 Identities=13% Similarity=0.139 Sum_probs=349.9
Q ss_pred chHHHHHHHhhhcCCchHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHH
Q 003081 58 STYKELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMA 137 (850)
Q Consensus 58 styk~l~~lA~~~g~p~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~ 137 (850)
+|..-.-.+|+.+|=|.+.+-+-.+..+...|..|+--.-....|+.-.|-..-|||..++..+-....|-+..||--+.
T Consensus 495 ttarafavvasalgip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itA 574 (1172)
T KOG0213|consen 495 TTARAFAVVASALGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITA 574 (1172)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHH
Confidence 44556777899999998877666666666569988855545555655555578899998888888889999999999999
Q ss_pred HHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHH-HHHHHHHHHHhccCcHHHH
Q 003081 138 HIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHL-RRIWTAAFRAMDDIKETVR 216 (850)
Q Consensus 138 ~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L-~~i~~~l~~~ldD~k~~VR 216 (850)
.+..+|+.....---+.|+.+++.|-+++...--.+=.+-..|+|-|+--.. +.+..|+ .+++-.+.|-++.+.+..+
T Consensus 575 lalsalaeaa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd-~eya~yyTrevmlil~rEf~sPDeemk 653 (1172)
T KOG0213|consen 575 LALSALAEAATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMD-AEYASYYTREVMLILIREFGSPDEEMK 653 (1172)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhcccccc-HHHHHHhHHHHHHHHHHhhCCChHHHH
Confidence 8888888543333455799999999999865433333444566666664433 3455544 4667777777787777776
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhc--cCCCc-hhHHHHHHHHHHHHHHHhcCcccccchHHH
Q 003081 217 TAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAE--GILSK-VDSISKASIGVVMKLVKGAGIAIRPHLSDL 293 (850)
Q Consensus 217 ~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~--gL~s~-~~evr~~a~~~L~~la~~~g~~l~P~lp~L 293 (850)
+...+..+ +.|+..... ..=+-..++|.++.. |-... +...-.....+-..||.+.|.. ++
T Consensus 654 kivLKVv~-------qcc~t~Gv~---~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~------~~ 717 (1172)
T KOG0213|consen 654 KIVLKVVK-------QCCATDGVE---PAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSD------PI 717 (1172)
T ss_pred HHHHHHHH-------HHhcccCCC---HHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCch------HH
Confidence 65543332 223322111 111334567776631 10000 0111123345667788888874 55
Q ss_pred HHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhc-----ChhhHhhHHHHHHHHHhc
Q 003081 294 VSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVV-----DTESLDQLVPHLARLVRS 368 (850)
Q Consensus 294 vp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~l-----d~~~l~~lvp~L~~~lk~ 368 (850)
|..++.-+.+..++ |-..+ +++++..+..+ |+..-+.++..++..++.
T Consensus 718 v~R~v~~lkde~e~---yrkm~------------------------~etv~ri~~~lg~~diderleE~lidgil~Afqe 770 (1172)
T KOG0213|consen 718 VSRVVLDLKDEPEQ---YRKMV------------------------AETVSRIVGRLGAADIDERLEERLIDGILYAFQE 770 (1172)
T ss_pred HHHHhhhhccccHH---HHHHH------------------------HHHHHHHHhccccccccHHHHHHHHHHHHHHHHh
Confidence 66666555543222 22111 34455544333 333334566777766654
Q ss_pred cCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhh---hCCHHHHHHHHHH-HH
Q 003081 369 GIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLK---YATPSQAQKLIEE-TA 444 (850)
Q Consensus 369 ~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~---~~~~~~v~~li~~-l~ 444 (850)
... +-......++.++..++...+||+.++...++..| +.+++.||+.++..++.+.. .|.++.+-.++.- |.
T Consensus 771 qtt--~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rL-nnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLy 847 (1172)
T KOG0213|consen 771 QTT--EDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRL-NNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLY 847 (1172)
T ss_pred ccc--chhhhhhhHHHHHHHHhhccccchHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHH
Confidence 311 11123455666778889999999999999999999 78999999999998887655 4544443333332 22
Q ss_pred HhhcCCchhhHHHHHHHHHHHhhchh-----h---hhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChh--hHH
Q 003081 445 ALHIDDKNSQISCAILLKSYSSVASD-----V---LSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRV--TLQ 514 (850)
Q Consensus 445 ~~~~~d~~~r~~~~~~l~al~~~~~~-----~---f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~--~i~ 514 (850)
+.+ ++++..+-+.++++|.....- . .+..++.+.|++ ....+.|.+...++...++..++. ..+
T Consensus 848 Eyl--geeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPIL----knrheKVqen~IdLvg~IadrgpE~v~aR 921 (1172)
T KOG0213|consen 848 EYL--GEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPIL----KNRHEKVQENCIDLVGTIADRGPEYVSAR 921 (1172)
T ss_pred Hhc--CcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhh----hhhHHHHHHHHHHHHHHHHhcCcccCCHH
Confidence 222 233444555555555332211 1 234445555554 223455777666776666543322 223
Q ss_pred hhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccc
Q 003081 515 LYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKD 594 (850)
Q Consensus 515 ~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~ 594 (850)
.++. |.=-+.+.|.+..-++|++|..++|-++..+|+ +.++..|+++|+..+...|-.---|++-++..|+
T Consensus 922 EWMR-IcfeLlelLkahkK~iRRaa~nTfG~IakaIGP------qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~-- 992 (1172)
T KOG0213|consen 922 EWMR-ICFELLELLKAHKKEIRRAAVNTFGYIAKAIGP------QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCG-- 992 (1172)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCH------HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcC--
Confidence 4432 222233455666778999999999999999886 4678888888865443334333334444444443
Q ss_pred cccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCC--chhHHhHHHHHHhhcccccccCCCCCCCCCCCcc
Q 003081 595 ISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRD--PKFFNIIFPLLFEMCGSTALNKSGQVPLPSDASK 672 (850)
Q Consensus 595 l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~~--~~~~~iv~~~l~~~~~~~~~~~~~~~~~~~~~~~ 672 (850)
+ =.++|++..+-.-.+..+....+++++-+.+-.+. .+..-.+.|+|....- |.|-.
T Consensus 993 ------p--FtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlm------------DrD~v- 1051 (1172)
T KOG0213|consen 993 ------P--FTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALM------------DRDLV- 1051 (1172)
T ss_pred ------c--hhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhc------------cccHH-
Confidence 2 35789999998878888899999888877766643 2344445677765432 12222
Q ss_pred cchhhhcccccHHHHHHhhhhhccccccccHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHh
Q 003081 673 EESADESVSAPLDKVLDCVSSCIHVAHVNDIIEQEKNLVQLFTISLSPGFPWTVKMSAFSSIKELCSRLQ 742 (850)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 742 (850)
-|+.....+......+.|. -..|...++-++.=+-+. +.+-.|+.++.+|+..+=.++.
T Consensus 1052 ------hRqta~~~I~Hl~Lg~~g~-g~eda~iHLLN~iWpNIl----e~sPhviqa~~e~~eg~r~~Lg 1110 (1172)
T KOG0213|consen 1052 ------HRQTAMNVIKHLALGVPGT-GCEDALIHLLNLIWPNIL----ETSPHVIQAFDEAMEGLRVALG 1110 (1172)
T ss_pred ------HHHHHHHHHHHHhcCCCCc-CcHHHHHHHHHHhhhhhc----CCChHHHHHHHHHHHHHHHHhc
Confidence 2344444222222222222 122333333333222122 4566778888888777755544
No 14
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=3.4e-13 Score=151.29 Aligned_cols=485 Identities=12% Similarity=0.097 Sum_probs=304.2
Q ss_pred cCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHH
Q 003081 125 QYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAA 204 (850)
Q Consensus 125 ~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l 204 (850)
=.||.+.||.-|...-.....-.....-.|+.++...-+.... ...+|++..--.+.+..+....+ +....++..+
T Consensus 26 g~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~~--~~~~~~~~~v~~~~~a~~~~~~d--~~~~~~~~~~ 101 (569)
T KOG1242|consen 26 GEDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSLH--NDNLRNNVVVLEGTLAFHLQIVD--PRPISIIEIL 101 (569)
T ss_pred CCCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccch--hHHHhhhhHHHHHHHHHhccccC--cchhHHHHHH
Confidence 3899999999998766555422222222334444444443333 46788888766666655433333 3334777888
Q ss_pred HHHhccCcHHHHHHHHHHHHHHHHH------------HHHhhhcccCc-c-hhHH---h-----HHHHhHH--HH--hhc
Q 003081 205 FRAMDDIKETVRTAGDKLCRSVTSL------------TIRLCDVTLTE-I-SDAR---Q-----SMDIVLP--FL--LAE 258 (850)
Q Consensus 205 ~~~ldD~k~~VR~aA~~~~~~L~~~------------~~r~~~~~~~~-~-~~~~---~-----~l~~lLP--~L--l~~ 258 (850)
+..++-+.++||.+....+..+... +.+..+...-+ . ..+. . ....+-| ++ +.+
T Consensus 102 ~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ 181 (569)
T KOG1242|consen 102 LEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSK 181 (569)
T ss_pred HHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHH
Confidence 8888999999998876555443211 11111110000 0 0000 0 0000011 00 012
Q ss_pred cCCCc-hhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCC
Q 003081 259 GILSK-VDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGS 337 (850)
Q Consensus 259 gL~s~-~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s 337 (850)
.+.+. ....|+.++.+........|+.+.||+.+++|.++..+++..+.+.. .
T Consensus 182 ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~---------------------A----- 235 (569)
T KOG1242|consen 182 AIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVRE---------------------A----- 235 (569)
T ss_pred HhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhH---------------------H-----
Confidence 23332 33445556666777778889999999999999999999865544321 1
Q ss_pred cHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHH
Q 003081 338 PMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAK 417 (850)
Q Consensus 338 ~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr 417 (850)
..++...+.+.++....+.++|.++..+... .|++|.++++.++.++...+..+.-+++.+++.+...+ .|..+.||
T Consensus 236 -a~~a~kai~~~~~~~aVK~llpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl-~DT~~evr 312 (569)
T KOG1242|consen 236 -AVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVL-WDTKPEVR 312 (569)
T ss_pred -HHHHHHHHHHhcCcchhhHhhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHH-ccCCHHHH
Confidence 1233444455555556678888888888776 89999999999999998888888889999999999999 79999999
Q ss_pred HHHHHHHHHHhhhCCHHHHHHHHHHHHHhhcCCch-hhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHH
Q 003081 418 RAFASACASVLKYATPSQAQKLIEETAALHIDDKN-SQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSD 496 (850)
Q Consensus 418 ~~~a~alg~L~~~~~~~~v~~li~~l~~~~~~d~~-~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~ 496 (850)
+++..++-.+..+.....++++++.+.+.+. |+. +-..|.+.+++-. ....+-.+-+..++|++-.+.++.+.+.+.
T Consensus 313 ~a~~~~l~~~~svidN~dI~~~ip~Lld~l~-dp~~~~~e~~~~L~~tt-FV~~V~~psLalmvpiL~R~l~eRst~~kr 390 (569)
T KOG1242|consen 313 KAGIETLLKFGSVIDNPDIQKIIPTLLDALA-DPSCYTPECLDSLGATT-FVAEVDAPSLALMVPILKRGLAERSTSIKR 390 (569)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhc-CcccchHHHHHhhccee-eeeeecchhHHHHHHHHHHHHhhccchhhh
Confidence 9999999888888877889999999998884 444 3334444443321 011112366788899998888776665544
Q ss_pred HHHHHHHHhcCCC--hhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCC-C
Q 003081 497 LFEELWEENTSGD--RVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGR-L 573 (850)
Q Consensus 497 ~~~~v~~~l~~~~--~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r-~ 573 (850)
....+.+-++.=. +..+.+|++++++-+...+.++.+++|..+++++|.+.+..|..- .+.+.|.+.+.+.+. .
T Consensus 391 ~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~---f~d~~p~l~e~~~~~k~ 467 (569)
T KOG1242|consen 391 KTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVS---FDDLIPELSETLTSEKS 467 (569)
T ss_pred hHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhc---ccccccHHHHhhccchh
Confidence 4333332333211 345789999999999999999999999999999999999887642 256677777776432 2
Q ss_pred hhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHH--HHHHHHHHHHHHHHHcCC---chhHHhHHHH
Q 003081 574 WEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKK--YREAAFSCLEQVIKAFRD---PKFFNIIFPL 648 (850)
Q Consensus 574 ~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~--~R~~Al~~Lg~l~~~~~~---~~~~~iv~~~ 648 (850)
---+....+.+..++.+.+ .+....+++.+++.+...... +|-.-++.+.-+=..++. .-+.+++.++
T Consensus 468 ~~~~~g~aq~l~evl~~~~-------v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~ 540 (569)
T KOG1242|consen 468 LVDRSGAAQDLSEVLAGLG-------VEKVEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEF 540 (569)
T ss_pred hhhhHHHhhhHHHHHhccc-------chHHHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHH
Confidence 2224445555655554332 245667777777666544332 443333333222112221 1256666666
Q ss_pred HHhhcc
Q 003081 649 LFEMCG 654 (850)
Q Consensus 649 l~~~~~ 654 (850)
+....+
T Consensus 541 ~k~~ad 546 (569)
T KOG1242|consen 541 LKGLAD 546 (569)
T ss_pred HHHhhh
Confidence 666654
No 15
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.61 E-value=1.3e-10 Score=130.84 Aligned_cols=675 Identities=12% Similarity=0.136 Sum_probs=381.4
Q ss_pred ccchHHHHHHHhhhcCCchHHHHHHHHhccchhhhhhhhHHhh-HHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHH
Q 003081 56 KLSTYKELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFG-FSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQD 134 (850)
Q Consensus 56 ~~styk~l~~lA~~~g~p~lv~~fm~la~~~~~w~sr~gAa~g-l~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~ 134 (850)
-.++.+-|-.=|.+.|...+..+.++++-+...-..-|--..+ +-.|+.+.++-..||+.+|+-.+-.|..||+...|-
T Consensus 380 Rk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlvrpYVhkILvViepllided~yar~ 459 (1172)
T KOG0213|consen 380 RKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARV 459 (1172)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccchhceeeeEEEeecceecchHHHhh
Confidence 4677778888889999988999999888554322222333333 477888888888999998887777788999999887
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccC-cH
Q 003081 135 AMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDI-KE 213 (850)
Q Consensus 135 a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~-k~ 213 (850)
.-..|..-|+.- .-|..++...-..+.+.+.-||.-...|++-++.+...+.+.|+|..+. ... .-
T Consensus 460 egreIisnLaka------aGla~mistmrpDidn~deYVRnttarafavvasalgip~llpfLkavc-------~SkkSw 526 (1172)
T KOG0213|consen 460 EGREIISNLAKA------AGLATMISTMRPDIDNKDEYVRNTTARAFAVVASALGIPALLPFLKAVC-------GSKKSW 526 (1172)
T ss_pred chHHHHHHHHHH------hhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHh-------ccccch
Confidence 767777666532 2345556666667788899999999999999999888888877766532 221 12
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHH
Q 003081 214 TVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDL 293 (850)
Q Consensus 214 ~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~L 293 (850)
+-|..+.+....++-.+. | ..-+.+..++.++ +.|+.++...||..+..++..+++..++.=...+..+
T Consensus 527 qaRhTgIkivqqIail~G--c--------svlphl~~lv~ii-~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsV 595 (1172)
T KOG0213|consen 527 QARHTGIKIVQQIAILSG--C--------SVLPHLKPLVKII-EHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSV 595 (1172)
T ss_pred hhhchhhHHHHHHHHHhc--c--------hhhhhhHHHHHHH-HHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHH
Confidence 345555554444443221 1 1123445555544 4689999999999999999999987664211122223
Q ss_pred HHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCc
Q 003081 294 VSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLN 373 (850)
Q Consensus 294 vp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~ 373 (850)
+..|-.-++.- -+. . + ..+..|++-++...|.+.-..+...+.-.+....+.|
T Consensus 596 lkpLwkgir~h-----------rgk-----~-l----------aafLkAigyliplmd~eya~yyTrevmlil~rEf~sP 648 (1172)
T KOG0213|consen 596 LKPLWKGIRQH-----------RGK-----E-L----------AAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSP 648 (1172)
T ss_pred HHHHHHHHHHc-----------cCh-----H-H----------HHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCC
Confidence 32222222210 000 0 0 0122344444444444332222222222221122222
Q ss_pred ---hHhhHHHHHHHHHHHhcccccch-HHHHHHHHHHhhhhcCcHHHHHHHHHHH---HHHhh-hCCHHHHHHHHHHHHH
Q 003081 374 ---TRVGVASFISLLVQKIGMDIKPY-TSMLLRLLFPVVKEEKSAAAKRAFASAC---ASVLK-YATPSQAQKLIEETAA 445 (850)
Q Consensus 374 ---tr~~a~~~l~~L~~~~~~~~~py-~~~lL~~Ll~~l~~D~n~~Vr~~~a~al---g~L~~-~~~~~~v~~li~~l~~ 445 (850)
.|-....++...|..-|.+= .| -..+++.++..+-..+...-|+.|..-. ..++. .-.+ ..+.+++.
T Consensus 649 DeemkkivLKVv~qcc~t~Gv~~-~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~----~~v~R~v~ 723 (1172)
T KOG0213|consen 649 DEEMKKIVLKVVKQCCATDGVEP-AYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSD----PIVSRVVL 723 (1172)
T ss_pred hHHHHHHHHHHHHHHhcccCCCH-HHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCch----HHHHHHhh
Confidence 23334444433333322111 12 2345666666552223333333333222 11221 1122 23334333
Q ss_pred hh-cCCchhhHHHHHHHHHHHhhchh-hhh-hhHhhHhHHHHHHhc-C-CchHHHHHHHHHHHHhcCCChhhHHhhHHHH
Q 003081 446 LH-IDDKNSQISCAILLKSYSSVASD-VLS-GYHAVIVPVIFISRF-E-DDKYVSDLFEELWEENTSGDRVTLQLYLGEI 520 (850)
Q Consensus 446 ~~-~~d~~~r~~~~~~l~al~~~~~~-~f~-~~~~~vlP~l~~~~~-d-~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eI 520 (850)
-| .+.+.+|..++.++..+....|. .|. .....++--++.+-+ + .+..|. ...+..++...+.-+++|++.|
T Consensus 724 ~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vm---l~gfg~V~~~lg~r~kpylpqi 800 (1172)
T KOG0213|consen 724 DLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVM---LLGFGTVVNALGGRVKPYLPQI 800 (1172)
T ss_pred hhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhh---hhhHHHHHHHHhhccccchHHH
Confidence 33 34456787777777776554432 232 233444444433332 2 222222 1223333344444578999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchh-hhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCC
Q 003081 521 VSLICEGIASSSWSSKRKSAKAICKLGEILGESLS-NYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAED 599 (850)
Q Consensus 521 l~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~-~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~ 599 (850)
...++..|++++..+|++|+..++.++..+...=. ..+..+--+|.+.|.+..++.--.||.|+-+++...+ +..-.
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvig--m~km~ 878 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIG--MTKMT 878 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhcc--ccccC
Confidence 99999999999999999999999999976543211 1244455567888888777888888888888876542 11112
Q ss_pred CCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCC----chhHHhHHHHHHhhcccccccCCCCCCCCCCCcccch
Q 003081 600 PTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRD----PKFFNIIFPLLFEMCGSTALNKSGQVPLPSDASKEES 675 (850)
Q Consensus 600 ~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~~----~~~~~iv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (850)
+| ...|+|.+.--++.+..++....+..+|.++..-+. .+...|-+.+++-+....
T Consensus 879 pP-i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahk------------------- 938 (1172)
T KOG0213|consen 879 PP-IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHK------------------- 938 (1172)
T ss_pred CC-hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHH-------------------
Confidence 22 233444444444556678999999999998876543 245666666666554311
Q ss_pred hhhcccccHHHHHHhhhhhccccccccHHHH-------HHH---------------HHHHH-----HhhcCCCCCchHHH
Q 003081 676 ADESVSAPLDKVLDCVSSCIHVAHVNDIIEQ-------EKN---------------LVQLF-----TISLSPGFPWTVKM 728 (850)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~---------------~~~~~-----~~~~~~~~~~~v~~ 728 (850)
.+-|..+.+ .++|+.+.+|. .|++.+ +++ .|.+| +..-..-..-.||-
T Consensus 939 -K~iRRaa~n-TfG~IakaIGP---qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQn 1013 (1172)
T KOG0213|consen 939 -KEIRRAAVN-TFGYIAKAIGP---QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQN 1013 (1172)
T ss_pred -HHHHHHHHh-hhhHHHHhcCH---HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHH
Confidence 113344333 45666665552 122111 111 12233 22222344567999
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCCCCcChhHHHHHHHHhhCchhhhhhhhhhhhhHHHHHHHHHHHHHHHhccccccccC
Q 003081 729 SAFSSIKELCSRLQKTLDDSAGTSPHAGISSLIQELFHTVSPKVVECISTVKIAQVHISASECLLEICKLFRQISSVYSS 808 (850)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~~~~~~~~~~~ 808 (850)
.+++++.-+|+....- -..+..++.|-+.|++-+ +-.-.|.-|.+++ +|..++ ..
T Consensus 1014 GVLkalsf~Feyigem----------------skdYiyav~PlleDAlmD-rD~vhRqta~~~I-------~Hl~Lg-~~ 1068 (1172)
T KOG0213|consen 1014 GVLKALSFMFEYIGEM----------------SKDYIYAVTPLLEDALMD-RDLVHRQTAMNVI-------KHLALG-VP 1068 (1172)
T ss_pred hHHHHHHHHHHHHHHH----------------hhhHHHHhhHHHHHhhcc-ccHHHHHHHHHHH-------HHHhcC-CC
Confidence 9999999999988754 233555666666777422 2223333443333 333332 12
Q ss_pred ccchHHHHHHHHH------HhhhHHHHHHHHHHHHHhcc
Q 003081 809 NIGIKGELVHQCE------MEKNMEAKSLLKKCIDILEN 841 (850)
Q Consensus 809 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 841 (850)
..++.|.+.|++. -|-|.-|+..+.+|++.|..
T Consensus 1069 g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~ 1107 (1172)
T KOG0213|consen 1069 GTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRV 1107 (1172)
T ss_pred CcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHH
Confidence 2346777777765 36788888888888877654
No 16
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=1.1e-11 Score=149.01 Aligned_cols=354 Identities=17% Similarity=0.238 Sum_probs=238.3
Q ss_pred ChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHH
Q 003081 170 LWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMD 249 (850)
Q Consensus 170 ~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~ 249 (850)
.|--|.+|+.+|+.+.... .++++||+++++|.++|.-=|+...||.+-.+.+++|.. |+. ....++++
T Consensus 970 ~wnSk~GaAfGf~~i~~~a-~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~------D~k----~~vd~y~n 1038 (1702)
T KOG0915|consen 970 TWNSKKGAAFGFGAIAKQA-GEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALIT------DSK----KVVDEYLN 1038 (1702)
T ss_pred hhhcccchhhchHHHHHHH-HHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhcc------ChH----HHHHHHHH
Confidence 6999999999999887643 588999999999999999999999999998888777742 221 22456778
Q ss_pred HhHHHHhhccCCCchhHHHHHHHHHHHHHHHhc-CcccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHH
Q 003081 250 IVLPFLLAEGILSKVDSISKASIGVVMKLVKGA-GIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLEN 328 (850)
Q Consensus 250 ~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~-g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~ 328 (850)
.|+.-|+ .++.+..|+||+.+|.++.++...- -..+...+|++-..++..+.++...+++
T Consensus 1039 eIl~eLL-~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~------------------ 1099 (1702)
T KOG0915|consen 1039 EILDELL-VNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVRE------------------ 1099 (1702)
T ss_pred HHHHHHH-HhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 8888777 4788999999999999999999874 3567788888888888887766544322
Q ss_pred HHHhhccCCcHHHHHHH-HHhhcC-------hhhHhhHHHHHHHHH-hccCCCchHhhHHHHHHHHHHHhcccccchHHH
Q 003081 329 LRISIAKGSPMWDTLDL-CINVVD-------TESLDQLVPHLARLV-RSGIGLNTRVGVASFISLLVQKIGMDIKPYTSM 399 (850)
Q Consensus 329 ~r~~~~~~s~l~eal~~-~~~~ld-------~~~l~~lvp~L~~~l-k~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~ 399 (850)
++-+ ...++.+ |++..| .+.+..++|.|.+-- -+. -...|..|..++..|+...|..++||.++
T Consensus 1100 ---aa~~---~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~-v~evr~~si~tl~dl~Kssg~~lkP~~~~ 1172 (1702)
T KOG0915|consen 1100 ---AADK---AARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSK-VNEVRRFSIGTLMDLAKSSGKELKPHFPK 1172 (1702)
T ss_pred ---HHHH---HHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccc-hHHHHHHHHHHHHHHHHhchhhhcchhhH
Confidence 1100 1123332 333333 245677788765410 011 11245678899999999999999999999
Q ss_pred HHHHHHHhhhhcCcHHH-------------------HHHHH------HHHHHHhhhCCHHHHHHHHHHHHHhhcC--Cch
Q 003081 400 LLRLLFPVVKEEKSAAA-------------------KRAFA------SACASVLKYATPSQAQKLIEETAALHID--DKN 452 (850)
Q Consensus 400 lL~~Ll~~l~~D~n~~V-------------------r~~~a------~alg~L~~~~~~~~v~~li~~l~~~~~~--d~~ 452 (850)
+++.++..+ +.-.+.| |.+++ .+++.++.......+.++++++.+...+ .-.
T Consensus 1173 LIp~ll~~~-s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~ 1251 (1702)
T KOG0915|consen 1173 LIPLLLNAY-SELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLG 1251 (1702)
T ss_pred HHHHHHHHc-cccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCC
Confidence 999999987 3222222 22222 4466677777777788888888887642 344
Q ss_pred hhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCC-hhhHHhhHHHHHHHHHHhhcCC
Q 003081 453 SQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGD-RVTLQLYLGEIVSLICEGIASS 531 (850)
Q Consensus 453 ~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~-~~~i~~yl~eIl~ll~~~L~d~ 531 (850)
.|..|+.++..+...++....||..+++..+|.+..|..+.++..|.-...-+..-. +.....++...+ ...+.+.
T Consensus 1252 Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l---~~~l~k~ 1328 (1702)
T KOG0915|consen 1252 TKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLL---ADLLGKD 1328 (1702)
T ss_pred cchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH---HHHhccC
Confidence 578899999999988898899999999999998888888888877765554443321 112233333322 2232222
Q ss_pred CHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHH
Q 003081 532 SWSSKRKSAKAICKLGEILGESLSNYHHVLLESI 565 (850)
Q Consensus 532 s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L 565 (850)
+. .++.+..++..++....+.+..|...++|.+
T Consensus 1329 es-~~siscatis~Ian~s~e~Lkn~asaILPLi 1361 (1702)
T KOG0915|consen 1329 ES-LKSISCATISNIANYSQEMLKNYASAILPLI 1361 (1702)
T ss_pred CC-ccchhHHHHHHHHHhhHHHHHhhHHHHHHHH
Confidence 11 1233333333355555555555555555543
No 17
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.55 E-value=1.8e-10 Score=146.76 Aligned_cols=537 Identities=14% Similarity=0.117 Sum_probs=315.5
Q ss_pred HHHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhchhh-hhHHHHHHhhcC-CCCHhHHHHHHHHHHHhccCChHHHH
Q 003081 75 LIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHL-RLLIPKLVRFQY-DPDKNVQDAMAHIWKSLVADPKRTID 152 (850)
Q Consensus 75 lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L-~~lvp~L~r~~~-Dp~~~VR~a~~~iw~~Lv~d~~~~i~ 152 (850)
.|+.++.+.++. .-..+.-|+..+..++....+.-.--+ ...||.|.+... ++++.||..+..+...++.+.+....
T Consensus 190 aVp~LV~LLsS~-d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~ 268 (2102)
T PLN03200 190 GVDILVKLLSSG-NSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQ 268 (2102)
T ss_pred CHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHH
Confidence 577788877654 245566677777777655332111111 246788887775 57789999998888888876543222
Q ss_pred HHHH-HHHHHHHHhhCCCChh---------HHHHHHHHHHHHHccCCchhhhHHHHHHH----------------HHHHH
Q 003081 153 EHLD-LIFDDLLIQSGSRLWR---------SREASCLSLADIIQGRKFDQVGKHLRRIW----------------TAAFR 206 (850)
Q Consensus 153 ~~~~-~Il~~Ll~~l~~~~wR---------VReaa~~Al~~Ll~~~~~~~l~~~L~~i~----------------~~l~~ 206 (850)
...+ -.++.|+..+.+++.. .++.+.+||+++..|.+ .+.++|.+++ +.+.+
T Consensus 269 ~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~--~ll~~L~~ll~s~rd~~~~ada~gALayll~ 346 (2102)
T PLN03200 269 AIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMS--ALILYLGELSESPRSPAPIADTLGALAYALM 346 (2102)
T ss_pred HHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCch--hhHHHHHHhhcccchHHHHHHHHhhHHHHHH
Confidence 2221 2455566555544433 38999999999998753 3444443332 22334
Q ss_pred HhccCcHHHHH-HHHHHHHHHHHHHHHhhhcccCcc--hhHHhHHH---------------HhHHHHhhccCC-CchhHH
Q 003081 207 AMDDIKETVRT-AGDKLCRSVTSLTIRLCDVTLTEI--SDARQSMD---------------IVLPFLLAEGIL-SKVDSI 267 (850)
Q Consensus 207 ~ldD~k~~VR~-aA~~~~~~L~~~~~r~~~~~~~~~--~~~~~~l~---------------~lLP~Ll~~gL~-s~~~ev 267 (850)
.+|+..+..+. .....++.|++.+ ....... ....+.+. ..+|.|+ +|. ....++
T Consensus 347 l~d~~~~~~~~i~~~~v~~~LV~Ll----r~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV--~LL~~~~~ev 420 (2102)
T PLN03200 347 VFDSSAESTRAFDPTVIEQILVKLL----KPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLV--GLITMATADV 420 (2102)
T ss_pred hcCCchhhhhhccccccHHHHHHHh----CCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhh--hhhccCCHHH
Confidence 44554443331 0112345555443 2111100 00111110 1122333 222 356789
Q ss_pred HHHHHHHHHHHHHhcCcccccch-HHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHH
Q 003081 268 SKASIGVVMKLVKGAGIAIRPHL-SDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLC 346 (850)
Q Consensus 268 r~~a~~~L~~la~~~g~~l~P~l-p~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~ 346 (850)
|..++.+|..++........-.. ...+|.|++.|++.+++...+..+....... .-+..|. + +
T Consensus 421 Q~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~---~ndenr~----------a---I 484 (2102)
T PLN03200 421 QEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTD---EVDESKW----------A---I 484 (2102)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc---CCHHHHH----------H---H
Confidence 99999999888855221100000 0236788888876544332222111111000 0000000 0 0
Q ss_pred HhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHH--HHHHHHHHhhhhcCcHHHHHHHHHHH
Q 003081 347 INVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTS--MLLRLLFPVVKEEKSAAAKRAFASAC 424 (850)
Q Consensus 347 ~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~--~lL~~Ll~~l~~D~n~~Vr~~~a~al 424 (850)
+. ...+|.|.++++++ ....|..|+.+|..++.. ....+.... ..++.++..+ .+.+..+++.++.++
T Consensus 485 ie-------aGaIP~LV~LL~s~-~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL 554 (2102)
T PLN03200 485 TA-------AGGIPPLVQLLETG-SQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTL 554 (2102)
T ss_pred HH-------CCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHH
Confidence 00 24688888999865 456777888888888752 223333332 3577788888 567788999999999
Q ss_pred HHHhhhCCHHHHHHHHHHHHHhhc-CCchhhHHHHHHHHHHHhhchhh--hhhh--HhhHhHHHHHHhcCCchHHHHHHH
Q 003081 425 ASVLKYATPSQAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDV--LSGY--HAVIVPVIFISRFEDDKYVSDLFE 499 (850)
Q Consensus 425 g~L~~~~~~~~v~~li~~l~~~~~-~d~~~r~~~~~~l~al~~~~~~~--f~~~--~~~vlP~l~~~~~d~~~~v~~~~~ 499 (850)
..++.....+.+ +.+..++. +|+..+..+..+++.+....... +... ....+|.+..-....++.+++.+.
T Consensus 555 ~nLi~~~d~~~I----~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa 630 (2102)
T PLN03200 555 TKLVRTADAATI----SQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAA 630 (2102)
T ss_pred HHHHhccchhHH----HHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHH
Confidence 999887665544 44555564 45566666777777665433221 1111 123556555444455677887777
Q ss_pred HHHHHhcCCChhhHH-hhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcc-hhhhH-HHHHHHHHHhcCCCChhh
Q 003081 500 ELWEENTSGDRVTLQ-LYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGES-LSNYH-HVLLESIMKEVPGRLWEG 576 (850)
Q Consensus 500 ~v~~~l~~~~~~~i~-~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~-l~~~l-~~llp~L~~~L~~r~~~g 576 (850)
.+...++.+...... ....++++.+...+.+.+.++++.++.+|+.+....... ..... ...+|.|.+-|...+-+.
T Consensus 631 ~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v 710 (2102)
T PLN03200 631 SVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEV 710 (2102)
T ss_pred HHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHH
Confidence 777777765433222 233556777888889999999999999999999732221 11112 236788888888777789
Q ss_pred HHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCch-h------HHhHHHHH
Q 003081 577 KDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPK-F------FNIIFPLL 649 (850)
Q Consensus 577 Ke~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~~~~-~------~~iv~~~l 649 (850)
++..+.+|..++......... .....++.+++-++..++..|+.|.++|..+++.++.++ + .-.+.|++
T Consensus 711 ~e~Al~ALanLl~~~e~~~ei----~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~ 786 (2102)
T PLN03200 711 AEQAVCALANLLSDPEVAAEA----LAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALV 786 (2102)
T ss_pred HHHHHHHHHHHHcCchHHHHH----HhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHH
Confidence 999999999998754321100 112346788888888999999999999999999998544 2 45566776
Q ss_pred Hhhcc
Q 003081 650 FEMCG 654 (850)
Q Consensus 650 ~~~~~ 654 (850)
.-+..
T Consensus 787 ~~L~~ 791 (2102)
T PLN03200 787 DLLNS 791 (2102)
T ss_pred HHHhc
Confidence 65544
No 18
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.50 E-value=3.8e-10 Score=124.88 Aligned_cols=590 Identities=14% Similarity=0.124 Sum_probs=339.5
Q ss_pred HHHHHHHhhhcCCchHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHH
Q 003081 60 YKELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHI 139 (850)
Q Consensus 60 yk~l~~lA~~~g~p~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~i 139 (850)
..-.-.+|..+|=+++.+-+=.+..+-..|..|+--.-....|+.-.|...-|||.-++.-+=.+..|-+-.||--+.+.
T Consensus 302 ~ra~~vva~algv~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~a 381 (975)
T COG5181 302 GRAVGVVADALGVEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANA 381 (975)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhH
Confidence 34556678888888776655555555446988886666667888777777778888777777677899999999888888
Q ss_pred HHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHH
Q 003081 140 WKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAG 219 (850)
Q Consensus 140 w~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA 219 (850)
...++.....---+.|+.++..|-+++...--.+=.+-..|.|-++--.+++-..-+-.+++..+|+.++.+++.-.+..
T Consensus 382 lS~lae~~~Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~ 461 (975)
T COG5181 382 LSYLAELVGPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDL 461 (975)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhH
Confidence 88887543323455799999999988764333333344455555554445555555667888999999988776443321
Q ss_pred HHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhc-cCCCch--hHHHHHHHHHHHHHHHhcCcccccchHHHHHH
Q 003081 220 DKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAE-GILSKV--DSISKASIGVVMKLVKGAGIAIRPHLSDLVSC 296 (850)
Q Consensus 220 ~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~-gL~s~~--~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~ 296 (850)
....+.|+...+ .+...+...+.|.+.+. +-.-.. ...-+....+-.-+|+..|. |.++..
T Consensus 462 --------l~v~~~C~~v~~--~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~------~~v~~k 525 (975)
T COG5181 462 --------LVVERICDKVGT--DTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGD------PRVSRK 525 (975)
T ss_pred --------HHHHHHHhccCC--CCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCC------hHHHHH
Confidence 223566764432 33555778889988751 111000 00001112333446666666 466778
Q ss_pred HHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHh-----hcChhhHhhHHHHHHHHHhccCC
Q 003081 297 MLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCIN-----VVDTESLDQLVPHLARLVRSGIG 371 (850)
Q Consensus 297 LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~-----~ld~~~l~~lvp~L~~~lk~~~~ 371 (850)
+++-+++. |+ .|-..+++. ....+. .+|+..-+.+...++..++...
T Consensus 526 il~~~~De-~e--p~r~m~a~~------------------------vsri~~~lg~~~~dErleerl~d~il~Afqeq~- 577 (975)
T COG5181 526 ILEYYSDE-PE--PYRKMNAGL------------------------VSRIFSRLGRLGFDERLEERLYDSILNAFQEQD- 577 (975)
T ss_pred HHhhccCC-cc--hhhhhhhHH------------------------HHHHHHhcccccccHHHHHHHHHHHHHHHHhcc-
Confidence 88887753 21 232333321 111211 1233333446666666665431
Q ss_pred CchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhh---CCHH-HHHHHHHHHHHhh
Q 003081 372 LNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKY---ATPS-QAQKLIEETAALH 447 (850)
Q Consensus 372 ~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~---~~~~-~v~~li~~l~~~~ 447 (850)
...++ ....++......+-..+||+..++..+++.| ..+.+.||..++..+|.+..+ |++. .+.++-.-+.+.+
T Consensus 578 ~t~~~-il~~f~tv~vsl~~r~kp~l~~ivStiL~~L-~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~l 655 (975)
T COG5181 578 TTVGL-ILPCFSTVLVSLEFRGKPHLSMIVSTILKLL-RSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENL 655 (975)
T ss_pred ccccE-EEecccceeeehhhccCcchHHHHHHHHHHh-cCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhc
Confidence 11111 0011111122334557899999999999999 688999999999988877654 4443 3344433344443
Q ss_pred cCCchhhHHHHHHHHHHHhhc-hhhh---h----hhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCCh--hhHHhhH
Q 003081 448 IDDKNSQISCAILLKSYSSVA-SDVL---S----GYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDR--VTLQLYL 517 (850)
Q Consensus 448 ~~d~~~r~~~~~~l~al~~~~-~~~f---~----~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~--~~i~~yl 517 (850)
. +++..+-+.++.+|.... .-.| + ..++.+.|++ ..+ .+.|...-..+...++-..+ ...+.++
T Consensus 656 g--e~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPIL-rnk---h~Kv~~nti~lvg~I~~~~peyi~~rEWM 729 (975)
T COG5181 656 G--EDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPIL-RNK---HQKVVANTIALVGTICMNSPEYIGVREWM 729 (975)
T ss_pred C--cccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhh-hhh---hHHHhhhHHHHHHHHHhcCcccCCHHHHH
Confidence 2 334445555666654322 1122 2 3344444543 122 23333333344444433221 1234444
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhccccccc
Q 003081 518 GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISA 597 (850)
Q Consensus 518 ~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~ 597 (850)
. |.=-+...|.+.+-++|++|..++|-++..+|+ +.++.+|.++|+..+...|-.---|++-++.-|+
T Consensus 730 R-IcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg----- 797 (975)
T COG5181 730 R-ICFELVDSLKSWNKEIRRNATETFGCISRAIGP------QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCG----- 797 (975)
T ss_pred H-HHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC-----
Confidence 3 222234556777789999999999999999886 4688889999965443444333334444444443
Q ss_pred CCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCc--hhHHhHHHHHHhhcccccccCCCCCCCCCCCcccch
Q 003081 598 EDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDP--KFFNIIFPLLFEMCGSTALNKSGQVPLPSDASKEES 675 (850)
Q Consensus 598 ~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~~~--~~~~iv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (850)
+ =.++|++..+-.-.+..+....+++++-+.+..+.. +..--+.|+|..... |.|..+
T Consensus 798 ---p--fsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAlt------------DrD~vh--- 857 (975)
T COG5181 798 ---P--FSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALT------------DRDPVH--- 857 (975)
T ss_pred ---c--hhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhc------------ccchHH---
Confidence 1 257888888877777888888888887777666532 344445687765442 122222
Q ss_pred hhhcccccHHHHH-HhhhhhccccccccHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHhh
Q 003081 676 ADESVSAPLDKVL-DCVSSCIHVAHVNDIIEQEKNLVQLFTISLSPGFPWTVKMSAFSSIKELCSRLQK 743 (850)
Q Consensus 676 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 743 (850)
|+.+.. ++ ..+..|.| .-..|..-++-++.=+-+. +.+-.|+.+..+|+..|-.++..
T Consensus 858 ----Rqta~n-vI~Hl~Lnc~g-tg~eda~IHLlNllwpNIl----e~sPhvi~~~~Eg~e~~~~~lg~ 916 (975)
T COG5181 858 ----RQTAMN-VIRHLVLNCPG-TGDEDAAIHLLNLLWPNIL----EPSPHVIQSFDEGMESFATVLGS 916 (975)
T ss_pred ----HHHHHH-HHHHHhcCCCC-cccHHHHHHHHHHhhhhcc----CCCcHHHHHHHHHHHHHHHHhcc
Confidence 333333 33 22233322 2233333333332222122 55677888999999888777664
No 19
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.48 E-value=1.4e-10 Score=137.08 Aligned_cols=447 Identities=14% Similarity=0.098 Sum_probs=296.4
Q ss_pred hHHHHHHHhhhcCCchHHHHHHHHhccc--hhhhhhhhHHhhHHHHH-HHhh-hhhchhhhhHHHHHHhhcCCCCHhHHH
Q 003081 59 TYKELCNLANEMGQPDLIYKFMDLANYQ--VSLNSKRGAAFGFSKIA-KQAG-DALKPHLRLLIPKLVRFQYDPDKNVQD 134 (850)
Q Consensus 59 tyk~l~~lA~~~g~p~lv~~fm~la~~~--~~w~sr~gAa~gl~~I~-~~~~-~~l~p~L~~lvp~L~r~~~Dp~~~VR~ 134 (850)
+-.+++.++..+..+.+.-.|.++..+. .+|+++|..++|+...+ -... +.++.. +-|..-+...|.+|+||+
T Consensus 179 ~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~e---lr~~~~~lc~d~~~~Vr~ 255 (759)
T KOG0211|consen 179 AVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRE---LRPIVQSLCQDDTPMVRR 255 (759)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHH---HHHHHHhhccccchhhHH
Confidence 3446888888888888888888887654 35999999998885443 3333 445554 444444558999999999
Q ss_pred HHHHHHHHhccCChHHHHH-H-HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCc
Q 003081 135 AMAHIWKSLVADPKRTIDE-H-LDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIK 212 (850)
Q Consensus 135 a~~~iw~~Lv~d~~~~i~~-~-~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k 212 (850)
++++=...+++ .+.+ . -..+++.+..-..|..--||++|..++.++.+-...+. +....+.+.++...+|..
T Consensus 256 ~~a~~l~~~a~----~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~--d~~~~~~~~l~~~~~d~~ 329 (759)
T KOG0211|consen 256 AVASNLGNIAK----VLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD--DVVKSLTESLVQAVEDGS 329 (759)
T ss_pred HHHhhhHHHHH----HHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch--hhhhhhhHHHHHHhcChh
Confidence 99775555442 2222 2 24456666666677777899999999888877544332 555677778888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------------hhhcccCc------------------chhHHhHHHHhHHHHhhccCC
Q 003081 213 ETVRTAGDKLCRSVTSLTIR-------------LCDVTLTE------------------ISDARQSMDIVLPFLLAEGIL 261 (850)
Q Consensus 213 ~~VR~aA~~~~~~L~~~~~r-------------~~~~~~~~------------------~~~~~~~l~~lLP~Ll~~gL~ 261 (850)
..||......+..+....-. .+...... .....-..+.++|.+.. -+.
T Consensus 330 ~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~-lv~ 408 (759)
T KOG0211|consen 330 WRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQV-LVL 408 (759)
T ss_pred HHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHH-HHh
Confidence 99988777666655443211 00000000 00011134556777653 245
Q ss_pred CchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHH
Q 003081 262 SKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWD 341 (850)
Q Consensus 262 s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~e 341 (850)
+.+..||......++.++...|.. .-++.+.|.++..+++..|.+..-+.+...
T Consensus 409 d~~~~vr~a~a~~~~~~~p~~~k~--~ti~~llp~~~~~l~de~~~V~lnli~~ls------------------------ 462 (759)
T KOG0211|consen 409 DNALHVRSALASVITGLSPILPKE--RTISELLPLLIGNLKDEDPIVRLNLIDKLS------------------------ 462 (759)
T ss_pred cccchHHHHHhccccccCccCCcC--cCccccChhhhhhcchhhHHHHHhhHHHHH------------------------
Confidence 667888888888777776665532 445556677777776655544321111000
Q ss_pred HHHHHHhhcChhhH-hhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHH
Q 003081 342 TLDLCINVVDTESL-DQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAF 420 (850)
Q Consensus 342 al~~~~~~ld~~~l-~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~ 420 (850)
-++.+.+..+.+.. +.++|.+.+...+. .|+.|.+....+..++...+..| +-+++-..+..++ .|....||+.+
T Consensus 463 ~~~~v~~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~~~~--~~~~~~~l~~~~l-~d~v~~Ir~~a 538 (759)
T KOG0211|consen 463 LLEEVNDVIGISTVSNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLGVEF--FDEKLAELLRTWL-PDHVYSIREAA 538 (759)
T ss_pred HHHhccCcccchhhhhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhhhHH--hhHHHHHHHHhhh-hhhHHHHHHHH
Confidence 01112222332322 44677777666553 57778899999999999888555 5556777788888 68889999999
Q ss_pred HHHHHHHhhhCCHH-HHHHHHHHHHHhhcCC-chhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHH
Q 003081 421 ASACASVLKYATPS-QAQKLIEETAALHIDD-KNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLF 498 (850)
Q Consensus 421 a~alg~L~~~~~~~-~v~~li~~l~~~~~~d-~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~ 498 (850)
+..+-.++...+.+ .....++++.....++ .-+|.++...+..++...+..+ +...++|++....+|+.++||...
T Consensus 539 a~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei--~~~~Llp~~~~l~~D~vanVR~nv 616 (759)
T KOG0211|consen 539 ARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI--TCEDLLPVFLDLVKDPVANVRINV 616 (759)
T ss_pred HHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH--HHHHHhHHHHHhccCCchhhhhhH
Confidence 99998888766632 4556666666665433 5579999999999988877643 457789998888999999999988
Q ss_pred HHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 003081 499 EELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEI 549 (850)
Q Consensus 499 ~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~ 549 (850)
.+.+..+.+.... ...-.++.+++.....|++.++|..|..+++.+...
T Consensus 617 ak~L~~i~~~L~~--~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 617 AKHLPKILKLLDE--SVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred HHHHHHHHhhcch--HHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHH
Confidence 8888877776432 334456777777777799888898888888888754
No 20
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.45 E-value=3.5e-09 Score=135.34 Aligned_cols=583 Identities=13% Similarity=0.095 Sum_probs=331.5
Q ss_pred chHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhh-hhhchh---hhhHHHHHHhhcCCCC---HhHHHHHHHHHHHhcc
Q 003081 73 PDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAG-DALKPH---LRLLIPKLVRFQYDPD---KNVQDAMAHIWKSLVA 145 (850)
Q Consensus 73 p~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~-~~l~p~---L~~lvp~L~r~~~Dp~---~~VR~a~~~iw~~Lv~ 145 (850)
+.-++.++.+.++. .+..|+.|+.++..+..... +.-... -...+|.|...+.+++ ..|++.+..+...|..
T Consensus 98 ~GaIppLV~LL~sG-s~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~ 176 (2102)
T PLN03200 98 GGCIPPLLSLLKSG-SAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCG 176 (2102)
T ss_pred cCChHHHHHHHHCC-CHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhc
Confidence 45677888888665 47899999999988876531 111101 1457888888888875 2355565666666665
Q ss_pred CChHHHHHHHHH-HHHHHHHhhCCCChhHHHHHHHHHHHHHccCC--chhhhHHHHHHHHHHHHHhc-cCcHHHHHHHHH
Q 003081 146 DPKRTIDEHLDL-IFDDLLIQSGSRLWRSREASCLSLADIIQGRK--FDQVGKHLRRIWTAAFRAMD-DIKETVRTAGDK 221 (850)
Q Consensus 146 d~~~~i~~~~~~-Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~--~~~l~~~L~~i~~~l~~~ld-D~k~~VR~aA~~ 221 (850)
..........+. .++.+...+.+.+..+++.|+.++..++.+.+ .+.+.. ...++.+.+++. +....||+.|..
T Consensus 177 ~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIe--aGaVP~LV~LL~sg~~~~VRE~AA~ 254 (2102)
T PLN03200 177 STDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLD--AGAVKQLLKLLGQGNEVSVRAEAAG 254 (2102)
T ss_pred CccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHH--CCCHHHHHHHHccCCChHHHHHHHH
Confidence 442222222222 67778888888889999999999988887643 222222 255778888886 456689998865
Q ss_pred HHHHHHHHHHHhhhcccCcchhHHhHH-HHhHHHHhhccCCC---------chhHHHHHHHHHHHHHHHhcCcccccchH
Q 003081 222 LCRSVTSLTIRLCDVTLTEISDARQSM-DIVLPFLLAEGILS---------KVDSISKASIGVVMKLVKGAGIAIRPHLS 291 (850)
Q Consensus 222 ~~~~L~~~~~r~~~~~~~~~~~~~~~l-~~lLP~Ll~~gL~s---------~~~evr~~a~~~L~~la~~~g~~l~P~lp 291 (850)
++..++.-. ......++ .-.+|.|+. -+.+ ....+++.+.++|++|+... +
T Consensus 255 AL~nLAs~s----------~e~r~~Iv~aGgIp~LI~-lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~--------~ 315 (2102)
T PLN03200 255 ALEALSSQS----------KEAKQAIADAGGIPALIN-ATVAPSKEFMQGEFAQALQENAMGALANICGGM--------S 315 (2102)
T ss_pred HHHHHhcCC----------HHHHHHHHHCCCHHHHHH-HHhCcchhhhccccchHHHHHHHHHHHHHhCCc--------h
Confidence 555543210 00011111 123444442 1111 23456889999999998443 4
Q ss_pred HHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChh-----hH--hhHHHHHHH
Q 003081 292 DLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTE-----SL--DQLVPHLAR 364 (850)
Q Consensus 292 ~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~-----~l--~~lvp~L~~ 364 (850)
.++|.|-+.+.+...... .+ |. ..++...+..++.. .+ ....+.|.+
T Consensus 316 ~ll~~L~~ll~s~rd~~~-----~a----------da-----------~gALayll~l~d~~~~~~~~i~~~~v~~~LV~ 369 (2102)
T PLN03200 316 ALILYLGELSESPRSPAP-----IA----------DT-----------LGALAYALMVFDSSAESTRAFDPTVIEQILVK 369 (2102)
T ss_pred hhHHHHHHhhcccchHHH-----HH----------HH-----------HhhHHHHHHhcCCchhhhhhccccccHHHHHH
Confidence 566666666643211110 00 00 01111121111110 01 124577777
Q ss_pred HHhccCCCchHhhHHHHHHHHHHHh--cccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHH--HH--HH
Q 003081 365 LVRSGIGLNTRVGVASFISLLVQKI--GMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPS--QA--QK 438 (850)
Q Consensus 365 ~lk~~~~~~tr~~a~~~l~~L~~~~--~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~--~v--~~ 438 (850)
+++.....+....+...|..+..+. ...+ +-....+.|+..+ ...+..++..++.++.+++....+. .+ ..
T Consensus 370 Llr~k~p~~vqe~V~eALasl~gN~~l~~~L--~~~daik~LV~LL-~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~g 446 (2102)
T PLN03200 370 LLKPRDTKLVQERIIEALASLYGNAYLSRKL--NHAEAKKVLVGLI-TMATADVQEELIRALSSLCCGKGGLWEALGGRE 446 (2102)
T ss_pred HhCCCCCchhHHHHHHHHHHhcCChHHHHHH--Hhccchhhhhhhh-ccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcC
Confidence 7776533222333333332211110 0011 1123345566666 4567889999999999998653322 11 12
Q ss_pred HHHHHHHhhc-CCchhhHHHHHHHHHHHhhchhhhhhh-HhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhh
Q 003081 439 LIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGY-HAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLY 516 (850)
Q Consensus 439 li~~l~~~~~-~d~~~r~~~~~~l~al~~~~~~~f~~~-~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~y 516 (850)
.++.+.+++. ++...+..++.+++.++....+.-... -.-.+|.+......+++.+++.+..++..++.. ...++..
T Consensus 447 gIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~-~~qir~i 525 (2102)
T PLN03200 447 GVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH-SEDIRAC 525 (2102)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-cHHHHHH
Confidence 4667777775 455667777888888876544322111 123556655555556777887766565555543 2344444
Q ss_pred HH--HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccc
Q 003081 517 LG--EIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKD 594 (850)
Q Consensus 517 l~--eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~ 594 (850)
+. ..++.+.+.|.+.++.+|..|+.+|..++...... .++.|..-+.+.....+..++++++.++......
T Consensus 526 V~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~-------~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~ 598 (2102)
T PLN03200 526 VESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA-------TISQLTALLLGDLPESKVHVLDVLGHVLSVASLE 598 (2102)
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh-------HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchh
Confidence 42 46777888889999999999999999998643221 2244455566666778888999998887644321
Q ss_pred c-ccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCc--h--hHHhHHHHHHhhcccccccCCCCCCCCCC
Q 003081 595 I-SAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDP--K--FFNIIFPLLFEMCGSTALNKSGQVPLPSD 669 (850)
Q Consensus 595 l-~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~~~--~--~~~iv~~~l~~~~~~~~~~~~~~~~~~~~ 669 (850)
- .... ......++.++.-.+..+...++.|+++++.++...++. . ..+.+.|++.-+... +++
T Consensus 599 d~~~~g-~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~-----------~~~ 666 (2102)
T PLN03200 599 DLVREG-SAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNN-----------TEA 666 (2102)
T ss_pred HHHHHh-hhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC-----------ChH
Confidence 0 0000 001234677777777789999999999999998854431 1 256677777666430 000
Q ss_pred CcccchhhhcccccHHHHHHhhhhhccccccccHHH-HHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHH
Q 003081 670 ASKEESADESVSAPLDKVLDCVSSCIHVAHVNDIIE-QEKNLVQLFTISLSPGFPWTVKMSAFSSIKELCSR 740 (850)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 740 (850)
.+.....++. +++.. +. ..++.. ......++ +++.+...+..++..++.++..++..
T Consensus 667 ---------v~keAA~AL~-nL~~~-~~--~~q~~~~v~~GaV~p-L~~LL~~~d~~v~e~Al~ALanLl~~ 724 (2102)
T PLN03200 667 ---------VATQSARALA-ALSRS-IK--ENRKVSYAAEDAIKP-LIKLAKSSSIEVAEQAVCALANLLSD 724 (2102)
T ss_pred ---------HHHHHHHHHH-HHHhC-CC--HHHHHHHHHcCCHHH-HHHHHhCCChHHHHHHHHHHHHHHcC
Confidence 2233233222 22221 11 111111 11123555 56677788889999888888888663
No 21
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=3.9e-11 Score=132.02 Aligned_cols=422 Identities=18% Similarity=0.192 Sum_probs=280.5
Q ss_pred hhhhhhhHHhhHHHHHHHhhhhh-chhhhhHHHHHH-hhcCCCCHhHHHHH--HHHHHHhccCChHHHHHHHHHHHHHHH
Q 003081 88 SLNSKRGAAFGFSKIAKQAGDAL-KPHLRLLIPKLV-RFQYDPDKNVQDAM--AHIWKSLVADPKRTIDEHLDLIFDDLL 163 (850)
Q Consensus 88 ~w~sr~gAa~gl~~I~~~~~~~l-~p~L~~lvp~L~-r~~~Dp~~~VR~a~--~~iw~~Lv~d~~~~i~~~~~~Il~~Ll 163 (850)
.+-.|++|+.-+.++..++-..= -..+++++..|. .|.+-|+.+-|+.. .-+.-++.-.++ . ..|...|++.++
T Consensus 13 lYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~-~-~~Y~~~iv~Pv~ 90 (675)
T KOG0212|consen 13 LYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIK-D-AGYLEKIVPPVL 90 (675)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccc-c-HHHHHHhhHHHH
Confidence 46788999999999998772110 124566676443 56788888777742 111111221222 1 239999999999
Q ss_pred HhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchh
Q 003081 164 IQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISD 243 (850)
Q Consensus 164 ~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~ 243 (850)
.+++|++-+||.-||.++-++..... ..+..|+++|+..+-++..|....||.+|..+ ..+.+-.+ .+ .+
T Consensus 91 ~cf~D~d~~vRyyACEsLYNiaKv~k-~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLL-dRLikdIV---te-----~~ 160 (675)
T KOG0212|consen 91 NCFSDQDSQVRYYACESLYNIAKVAK-GEVLVYFNEIFDVLCKLSADSDQNVRGGAELL-DRLIKDIV---TE-----SA 160 (675)
T ss_pred HhccCccceeeeHhHHHHHHHHHHhc-cCcccchHHHHHHHHHHhcCCccccccHHHHH-HHHHHHhc---cc-----cc
Confidence 99999999999999999999987654 34668999999999999999999999988533 33332211 11 11
Q ss_pred HHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccch
Q 003081 244 ARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQT 323 (850)
Q Consensus 244 ~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~ 323 (850)
++-.++.++|.|-++ +...++..|.+.+.-+.-+-...+-.+-.|+|.+.+-|++.|++..+++..-.....+
T Consensus 161 ~tFsL~~~ipLL~er-iy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~------ 233 (675)
T KOG0212|consen 161 STFSLPEFIPLLRER-IYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLS------ 233 (675)
T ss_pred cccCHHHHHHHHHHH-HhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHH------
Confidence 234678899987643 4445678888888766555556677889999999999999999877766432111111
Q ss_pred hhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHH
Q 003081 324 EKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRL 403 (850)
Q Consensus 324 d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~ 403 (850)
+-+.+. +++|.. +| .++.++.+..-+.++ ....+..+...+..++.-.|.++-||..+++..
T Consensus 234 ~fL~eI-----~s~P~s---------~d---~~~~i~vlv~~l~ss-~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~ 295 (675)
T KOG0212|consen 234 EFLAEI-----RSSPSS---------MD---YDDMINVLVPHLQSS-EPEIQLKALTWIQEFVKIPGRDLLLYLSGILTA 295 (675)
T ss_pred HHHHHH-----hcCccc---------cC---cccchhhccccccCC-cHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhh
Confidence 111111 122211 01 233444444444443 223455567777777888899999999999999
Q ss_pred HHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHH------HHHHHHHHHhhcCC-chhhHHHHHHHHHHHhhchhhhhhhH
Q 003081 404 LFPVVKEEKSAAAKRAFASACASVLKYATPSQA------QKLIEETAALHIDD-KNSQISCAILLKSYSSVASDVLSGYH 476 (850)
Q Consensus 404 Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v------~~li~~l~~~~~~d-~~~r~~~~~~l~al~~~~~~~f~~~~ 476 (850)
+++++.++....++..+...-+.+.+.++.+.. .++++-+...++.| .+.|.+|..-+.-+-...|..+-.+.
T Consensus 296 iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~ 375 (675)
T KOG0212|consen 296 ILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHN 375 (675)
T ss_pred cccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhc
Confidence 999994333335665555555566666655433 25566665555533 45688888878888777887777888
Q ss_pred hhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChh-hHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh
Q 003081 477 AVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRV-TLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEIL 550 (850)
Q Consensus 477 ~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~-~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~ 550 (850)
+.+++.++....|++++|......+...++.+... ..++++..+++++.+ ..--++..+...+..+|.-+
T Consensus 376 ~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~f~e----~~~~l~~Rg~lIIRqlC~lL 446 (675)
T KOG0212|consen 376 DSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLLEMFKE----DTKLLEVRGNLIIRQLCLLL 446 (675)
T ss_pred cHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhh----hhHHHHhhhhHHHHHHHHHh
Confidence 99999999899999999888888888888876432 445555555555443 22335555666777777654
No 22
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=4.8e-10 Score=123.62 Aligned_cols=390 Identities=15% Similarity=0.183 Sum_probs=258.7
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHcc----CCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhc
Q 003081 161 DLLIQSGSRLWRSREASCLSLADIIQG----RKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDV 236 (850)
Q Consensus 161 ~Ll~~l~~~~wRVReaa~~Al~~Ll~~----~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~ 236 (850)
.+..+++|+.+.-|.+++.-+-.++.+ ...+++...+.++..-. +...+..-|+.+. -.++.+.+..
T Consensus 4 ~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~---a~s~~~n~rkGgL---iGlAA~~iaL--- 74 (675)
T KOG0212|consen 4 SIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDY---AYSPHANMRKGGL---IGLAAVAIAL--- 74 (675)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHh---ccCcccccccchH---HHHHHHHHHh---
Confidence 456789999999999999887776653 23334444333332222 2222222344322 1222211111
Q ss_pred ccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhh
Q 003081 237 TLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHA 316 (850)
Q Consensus 237 ~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a 316 (850)
| ..++. ++..++|.++ ..+.+.+..||-+||+.+-+|+|.+...+.+|.+.|...+-....+.++.+.+-
T Consensus 75 --g-~~~~~-Y~~~iv~Pv~-~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~----- 144 (675)
T KOG0212|consen 75 --G-IKDAG-YLEKIVPPVL-NCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGG----- 144 (675)
T ss_pred --c-cccHH-HHHHhhHHHH-HhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccH-----
Confidence 1 12233 8888877777 357778889999999999999999999999999999999988887665544220
Q ss_pred hhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcC-hhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccc
Q 003081 317 ANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVD-TESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKP 395 (850)
Q Consensus 317 ~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld-~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~p 395 (850)
.+-+|.+...++ -.-+ .=.++.++|.|-+-+-.- +..+|+.....+..|-...+-.+-.
T Consensus 145 ------aeLLdRLikdIV-------------te~~~tFsL~~~ipLL~eriy~~-n~~tR~flv~Wl~~Lds~P~~~m~~ 204 (675)
T KOG0212|consen 145 ------AELLDRLIKDIV-------------TESASTFSLPEFIPLLRERIYVI-NPMTRQFLVSWLYVLDSVPDLEMIS 204 (675)
T ss_pred ------HHHHHHHHHHhc-------------cccccccCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhcCCcHHHHh
Confidence 122232221111 1111 114788999888877653 6778998888888776666777889
Q ss_pred hHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhh-hCCH-HH--HHHHHHHHHHhh-cCCchhhHHHHHHHHHHHhhchh
Q 003081 396 YTSMLLRLLFPVVKEEKSAAAKRAFASACASVLK-YATP-SQ--AQKLIEETAALH-IDDKNSQISCAILLKSYSSVASD 470 (850)
Q Consensus 396 y~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~-~~~~-~~--v~~li~~l~~~~-~~d~~~r~~~~~~l~al~~~~~~ 470 (850)
|.+.++..+++.+ .|.+.+||.-.-.+++.+++ +.++ .. ....++-+.... +.++..+..+..-+..+.+..|.
T Consensus 205 yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~ 283 (675)
T KOG0212|consen 205 YLPSLLDGLFNML-SDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGR 283 (675)
T ss_pred cchHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCc
Confidence 9999999999999 79999999777777776654 2221 11 122222222222 23555677777777888888888
Q ss_pred hhhhhHhhHhHHHHHHhcCCch-HHHHHHHHH---HHHhcCCChhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 003081 471 VLSGYHAVIVPVIFISRFEDDK-YVSDLFEEL---WEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKL 546 (850)
Q Consensus 471 ~f~~~~~~vlP~l~~~~~d~~~-~v~~~~~~v---~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~l 546 (850)
.+-.+.+.++-.++-.+.+.++ +.++....+ +-.+++.-...-.--...|++.+.+.+.+...+.|-++..=+-.+
T Consensus 284 ~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l 363 (675)
T KOG0212|consen 284 DLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILL 363 (675)
T ss_pred chhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 8877777777666666666555 344433222 222222211100123457899999999999999999999999999
Q ss_pred HHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHh
Q 003081 547 GEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTS 590 (850)
Q Consensus 547 a~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~ 590 (850)
-.+.|..+.-|.+.+++.|...|.+++-+.-...|+-++.+|..
T Consensus 364 ~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 364 YHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSS 407 (675)
T ss_pred HhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999998876666666666666653
No 23
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.34 E-value=2.4e-08 Score=117.89 Aligned_cols=466 Identities=14% Similarity=0.099 Sum_probs=292.5
Q ss_pred hhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhh
Q 003081 115 RLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVG 194 (850)
Q Consensus 115 ~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~ 194 (850)
..+++...++...++..+|+-..-.|..+....++ .+--+...+.+.+.+++.-+|..|..+++.+. .+++
T Consensus 41 ~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~----~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~----~~~~- 111 (526)
T PF01602_consen 41 SFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPE----LLILIINSLQKDLNSPNPYIRGLALRTLSNIR----TPEM- 111 (526)
T ss_dssp GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHH----HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-----SHHH-
T ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchh----HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc----ccch-
Confidence 35788888888999999999998888888765433 44557777888888999999999988888875 2333
Q ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHH-hHHHHhhccCCCchhHHHHHHHH
Q 003081 195 KHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDI-VLPFLLAEGILSKVDSISKASIG 273 (850)
Q Consensus 195 ~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~-lLP~Ll~~gL~s~~~evr~~a~~ 273 (850)
.+.+.+.+.+.+.|.++.||+.|..++..+.+. ++. .+.. ++|.+. +-+.+.++.|+..|+.
T Consensus 112 --~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~-----~p~---------~~~~~~~~~l~-~lL~d~~~~V~~~a~~ 174 (526)
T PF01602_consen 112 --AEPLIPDVIKLLSDPSPYVRKKAALALLKIYRK-----DPD---------LVEDELIPKLK-QLLSDKDPSVVSAALS 174 (526)
T ss_dssp --HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-----CHC---------CHHGGHHHHHH-HHTTHSSHHHHHHHHH
T ss_pred --hhHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc-----CHH---------HHHHHHHHHHh-hhccCCcchhHHHHHH
Confidence 345666777788899999999886555544332 111 1222 355544 2245567889999999
Q ss_pred HHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccch--h-----hhHHHHHh--hccCCcHHHHHH
Q 003081 274 VVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQT--E-----KLENLRIS--IAKGSPMWDTLD 344 (850)
Q Consensus 274 ~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~--d-----~id~~r~~--~~~~s~l~eal~ 344 (850)
++..+ +.......+.++.++..|.+.+....|...-.+-.....+.... + -++..... ....+-..+++.
T Consensus 175 ~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~ 253 (526)
T PF01602_consen 175 LLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIR 253 (526)
T ss_dssp HHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHH
Confidence 99988 43333333677888888888777766654322222222221110 0 11111100 011122345555
Q ss_pred HHHhhcChh-hHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHH
Q 003081 345 LCINVVDTE-SLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASA 423 (850)
Q Consensus 345 ~~~~~ld~~-~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~a 423 (850)
.+....... .+..+++.+...+.+. ..+.|..+.+.+..++.+.+..+. + ....+..+..+++.+||..+...
T Consensus 254 ~i~~l~~~~~~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~~~~v~-~----~~~~~~~l~~~~d~~Ir~~~l~l 327 (526)
T PF01602_consen 254 LIIKLSPSPELLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSNPPAVF-N----QSLILFFLLYDDDPSIRKKALDL 327 (526)
T ss_dssp HHHHHSSSHHHHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHCHHHHG-T----HHHHHHHHHCSSSHHHHHHHHHH
T ss_pred HHHHhhcchHHHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcccchhhh-h----hhhhhheecCCCChhHHHHHHHH
Confidence 554433333 4677899999999854 566888888888877666532332 1 11222334247788999876555
Q ss_pred HHHHhhhCCHHHHHHHHHHHHHhh-c-CCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHH
Q 003081 424 CASVLKYATPSQAQKLIEETAALH-I-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEEL 501 (850)
Q Consensus 424 lg~L~~~~~~~~v~~li~~l~~~~-~-~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v 501 (850)
+.. .+.+..+..+++.+.... . .|.+.+..+...++.++...+..+..+.+.++.++......-..++.....++
T Consensus 328 L~~---l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~l 404 (526)
T PF01602_consen 328 LYK---LANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDL 404 (526)
T ss_dssp HHH---H--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHH
T ss_pred Hhh---cccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHH
Confidence 544 456677777888877766 3 36778888888888888777777777777777766432211122222222233
Q ss_pred HHHhcCCChhhHHhhHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHH
Q 003081 502 WEENTSGDRVTLQLYLGEIVSLICEGIAS-SSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDAL 580 (850)
Q Consensus 502 ~~~l~~~~~~~i~~yl~eIl~ll~~~L~d-~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~v 580 (850)
... .++. -..++..+.+.+.+ .+..+++.++-.+|+-+...+. .. ..+.++..+.+.+...+...|..+
T Consensus 405 l~~-~~~~-------~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~-~~-~~~~~~~~l~~~~~~~~~~vk~~i 474 (526)
T PF01602_consen 405 LSN-NPEL-------REKILKKLIELLEDISSPEALAAAIWILGEYGELIEN-TE-SAPDILRSLIENFIEESPEVKLQI 474 (526)
T ss_dssp HHH-STTT-------HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT-TT-HHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred hhc-Chhh-------hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc-cc-cHHHHHHHHHHhhccccHHHHHHH
Confidence 221 1111 12234444555444 5667899999999988877655 11 467788888888866667799999
Q ss_pred HHHHHHHHHhcccccccCCCCchHHHHHHHHHHHh--hcCHHHHHHHHHHHHHH
Q 003081 581 LYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACR--KKIKKYREAAFSCLEQV 632 (850)
Q Consensus 581 L~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~--r~~~~~R~~Al~~Lg~l 632 (850)
+.++..+....+. ....+.+.+.+...+. ..+.++|..|...+.-+
T Consensus 475 lt~~~Kl~~~~~~------~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 475 LTALAKLFKRNPE------NEVQNEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHHHHHHHHHSCS------TTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCc------hhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 9999999865431 1234578888888887 67999999998876543
No 24
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.24 E-value=1.3e-07 Score=105.36 Aligned_cols=669 Identities=12% Similarity=0.100 Sum_probs=348.0
Q ss_pred cchHHHHHHHhhhcCCchHHHHHHHHhccchhhhhhhhHHhh-HHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHH
Q 003081 57 LSTYKELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFG-FSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDA 135 (850)
Q Consensus 57 ~styk~l~~lA~~~g~p~lv~~fm~la~~~~~w~sr~gAa~g-l~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a 135 (850)
+++.+-|-.-|-+.|..-+..+.++++-+-..-..-|--..+ +-.++.+.++-..||..+|+-..=.|.+||++++|-.
T Consensus 186 ~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl~~pyvhkILvVv~pllided~~~r~~ 265 (975)
T COG5181 186 MEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLKVPYVHKILVVVGPLLIDEDLKRRCM 265 (975)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhcccccccceeeEEEEeeccccCccHHHhcc
Confidence 444455555555666666666666655222111111222222 2555666666666777766655555678999998866
Q ss_pred HHHHHHHhccC-------------Ch--------------HHHHHH--HHHHHHHHHHhhCCC-ChhHHHHHHHHHHHHH
Q 003081 136 MAHIWKSLVAD-------------PK--------------RTIDEH--LDLIFDDLLIQSGSR-LWRSREASCLSLADII 185 (850)
Q Consensus 136 ~~~iw~~Lv~d-------------~~--------------~~i~~~--~~~Il~~Ll~~l~~~-~wRVReaa~~Al~~Ll 185 (850)
-..|.-.|+.- .. .++..+ +++++|.|-....++ +|.-|..++...-.+.
T Consensus 266 g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~algv~~llpfl~a~c~SrkSw~aRhTgiri~qqI~ 345 (975)
T COG5181 266 GREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADALGVEELLPFLEALCGSRKSWEARHTGIRIAQQIC 345 (975)
T ss_pred cHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCccchhhhchhhHHHHHHH
Confidence 55555555421 00 022233 377888888888776 8999987765444433
Q ss_pred c--cCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCC-
Q 003081 186 Q--GRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILS- 262 (850)
Q Consensus 186 ~--~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s- 262 (850)
. |++ ..+|+..++..+-.++.|.+.-||--+..++.++++.. -|+ +.+.++.++-.|- .|..+
T Consensus 346 ~llG~s---~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~----~Py------gie~fd~vl~pLw-~g~~~h 411 (975)
T COG5181 346 ELLGRS---RLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELV----GPY------GIEQFDEVLCPLW-EGASQH 411 (975)
T ss_pred HHhCcc---HHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhc----CCc------chHHHHHHHHHHH-HHHHhc
Confidence 2 444 56788888888888888888889977666666665432 222 4456777776654 35432
Q ss_pred chhHHHHHHHHHHHHHHHhcCc-ccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHH
Q 003081 263 KVDSISKASIGVVMKLVKGAGI-AIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWD 341 (850)
Q Consensus 263 ~~~evr~~a~~~L~~la~~~g~-~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~e 341 (850)
...+.. ..+.+.+-|+.-..+ -...|--+.+..++..+.+.+.+... +.+ -
T Consensus 412 rgk~l~-sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk-------------~~l--------------~ 463 (975)
T COG5181 412 RGKELV-SFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKK-------------DLL--------------V 463 (975)
T ss_pred CCchHH-HHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcch-------------hHH--------------H
Confidence 222221 223333333321111 11223334555555555443322111 000 0
Q ss_pred HHHHHH--hhcChhh-HhhHHHHHHHHH--hccCC-Cch-HhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcH
Q 003081 342 TLDLCI--NVVDTES-LDQLVPHLARLV--RSGIG-LNT-RVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSA 414 (850)
Q Consensus 342 al~~~~--~~ld~~~-l~~lvp~L~~~l--k~~~~-~~t-r~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~ 414 (850)
....|- ...+..- ..++.|.+.+-. +...+ -+. |+. .-.-..++...| ...+.+-++..+ .|..+
T Consensus 464 v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v-~~ttvilAk~~g------~~~v~~kil~~~-~De~e 535 (975)
T COG5181 464 VERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQV-VLTTVILAKMGG------DPRVSRKILEYY-SDEPE 535 (975)
T ss_pred HHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhccccccccee-ehhHHHHHHHcC------ChHHHHHHHhhc-cCCcc
Confidence 111221 1122211 133444433221 11111 000 110 011112233322 123455566666 56666
Q ss_pred HHHHHHHHHHHHHhhhCC-----HHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcC
Q 003081 415 AAKRAFASACASVLKYAT-----PSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFE 489 (850)
Q Consensus 415 ~Vr~~~a~alg~L~~~~~-----~~~v~~li~~l~~~~~~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d 489 (850)
--|+-.+.+...++...+ +.....+...+...+.+++..-..+....+++.....-..++|++.++.-++.-...
T Consensus 536 p~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~ 615 (975)
T COG5181 536 PYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRS 615 (975)
T ss_pred hhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcC
Confidence 666655555444433222 222333444333333222111100001111111111223467777777766666666
Q ss_pred CchHHHHHHHHHHHHhcC---CChhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhC-cchhhhHHHHHHHH
Q 003081 490 DDKYVSDLFEELWEENTS---GDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILG-ESLSNYHHVLLESI 565 (850)
Q Consensus 490 ~~~~v~~~~~~v~~~l~~---~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g-~~l~~~l~~llp~L 565 (850)
..+.||.-..++...++. .++.. .-+..+-.++.+.+.....++--....++..+.++.+ ..+.|-...|+|.|
T Consensus 616 k~p~vR~~aadl~~sl~~vlk~c~e~--~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~l 693 (975)
T COG5181 616 KPPDVRIRAADLMGSLAKVLKACGET--KELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSL 693 (975)
T ss_pred CCccHHHHHHHHHHHHHHHHHhcchH--HHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccc
Confidence 678888877777655443 22211 2233344556778888888888888888888887655 34555555566666
Q ss_pred HHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCchhHHhH
Q 003081 566 MKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNII 645 (850)
Q Consensus 566 ~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~~~~~~~iv 645 (850)
.-.|+.|..-..+.-+..++.++....+++.. ..--.|-=-++..++..|.++|+.|..++|-+.++.+..++.+++
T Consensus 694 tPILrnkh~Kv~~nti~lvg~I~~~~peyi~~---rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~L 770 (975)
T COG5181 694 TPILRNKHQKVVANTIALVGTICMNSPEYIGV---REWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDIL 770 (975)
T ss_pred cHhhhhhhHHHhhhHHHHHHHHHhcCcccCCH---HHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHH
Confidence 55565554445555666677777655543311 000112223445566778999999999999999999877766664
Q ss_pred HHHHHhhcccccccCCCCCCCCCCCcccchhhhcccccHHHH-HHhhhhhccc-cccccHHHHHHHHHHHHHhhcCCCCC
Q 003081 646 FPLLFEMCGSTALNKSGQVPLPSDASKEESADESVSAPLDKV-LDCVSSCIHV-AHVNDIIEQEKNLVQLFTISLSPGFP 723 (850)
Q Consensus 646 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (850)
. ..+.- ++ .....|..+ +..+.+.+|. ...|-. ..-.....
T Consensus 771 l---nnLkv----------------qe------Rq~RvctsvaI~iVae~cgpfsVlP~l------------m~dY~TPe 813 (975)
T COG5181 771 L---NNLKV----------------QE------RQQRVCTSVAISIVAEYCGPFSVLPTL------------MSDYETPE 813 (975)
T ss_pred H---hcchH----------------HH------HHhhhhhhhhhhhhHhhcCchhhHHHH------------HhcccCch
Confidence 3 33321 00 111222222 3455565553 233322 22233556
Q ss_pred chHHHHHHHHHHHHHHHHhhcccCCCCCCCCcChhHHHHHHHHhhCchhhhhhhhhhhhhHHHHHHHHHHHHHHHhcccc
Q 003081 724 WTVKMSAFSSIKELCSRLQKTLDDSAGTSPHAGISSLIQELFHTVSPKVVECISTVKIAQVHISASECLLEICKLFRQIS 803 (850)
Q Consensus 724 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~~~~~~ 803 (850)
-.||-.+++++.-+|+..... -..+..++.|-+.|+.-+ +-.-.|.-|.+.+ +|..
T Consensus 814 ~nVQnGvLkam~fmFeyig~~----------------s~dYvy~itPlleDAltD-rD~vhRqta~nvI-------~Hl~ 869 (975)
T COG5181 814 ANVQNGVLKAMCFMFEYIGQA----------------SLDYVYSITPLLEDALTD-RDPVHRQTAMNVI-------RHLV 869 (975)
T ss_pred hHHHHhHHHHHHHHHHHHHHH----------------HHHHHHHhhHHHHhhhcc-cchHHHHHHHHHH-------HHHh
Confidence 789999999999999998864 223455666666777433 3333444444433 3333
Q ss_pred ccccCccchHHHHHHHHH------HhhhHHHHHHHHHHHHHhccc
Q 003081 804 SVYSSNIGIKGELVHQCE------MEKNMEAKSLLKKCIDILENL 842 (850)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 842 (850)
+.. ...+..|..-|++. -|-|.-|+....||++.+.+-
T Consensus 870 Lnc-~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~ 913 (975)
T COG5181 870 LNC-PGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATV 913 (975)
T ss_pred cCC-CCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHH
Confidence 321 11224555555443 367888999999998887653
No 25
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.24 E-value=4.6e-07 Score=106.99 Aligned_cols=418 Identities=12% Similarity=0.094 Sum_probs=262.4
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhcc
Q 003081 131 NVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDD 210 (850)
Q Consensus 131 ~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD 210 (850)
.-++++..+......+. .++..+..+++.+.+++...|.-+-.++..+....+. .+.-+...+.+-+.+
T Consensus 22 ~~~~~l~kli~~~~~G~------~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~-----~~~l~~n~l~kdl~~ 90 (526)
T PF01602_consen 22 KKKEALKKLIYLMMLGY------DISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPE-----LLILIINSLQKDLNS 90 (526)
T ss_dssp HHHHHHHHHHHHHHTT---------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHH-----HHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHcCC------CCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchh-----HHHHHHHHHHHhhcC
Confidence 34445666555544332 3446777788888999999999999999888654431 233455566677889
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccch
Q 003081 211 IKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHL 290 (850)
Q Consensus 211 ~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~l 290 (850)
..+.+|..|.+.+..++ ..++.+.++|.+. +.+.++.+.||..|+.++.++.+..+..+.+.
T Consensus 91 ~n~~~~~lAL~~l~~i~----------------~~~~~~~l~~~v~-~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~- 152 (526)
T PF01602_consen 91 PNPYIRGLALRTLSNIR----------------TPEMAEPLIPDVI-KLLSDPSPYVRKKAALALLKIYRKDPDLVEDE- 152 (526)
T ss_dssp SSHHHHHHHHHHHHHH-----------------SHHHHHHHHHHHH-HHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG-
T ss_pred CCHHHHHHHHhhhhhhc----------------ccchhhHHHHHHH-HHhcCCchHHHHHHHHHHHHHhccCHHHHHHH-
Confidence 99999998864444332 1235666777765 45677889999999999999999877654443
Q ss_pred HHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcCh---hhHhhHHHHHHHHHh
Q 003081 291 SDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDT---ESLDQLVPHLARLVR 367 (850)
Q Consensus 291 p~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~---~~l~~lvp~L~~~lk 367 (850)
+++.+.+++.+.+|.+..... .++..+ +.-+. ..++.++..+.+.+.
T Consensus 153 --~~~~l~~lL~d~~~~V~~~a~---------------------------~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~ 202 (526)
T PF01602_consen 153 --LIPKLKQLLSDKDPSVVSAAL---------------------------SLLSEI-KCNDDSYKSLIPKLIRILCQLLS 202 (526)
T ss_dssp --HHHHHHHHTTHSSHHHHHHHH---------------------------HHHHHH-HCTHHHHTTHHHHHHHHHHHHHT
T ss_pred --HHHHHhhhccCCcchhHHHHH---------------------------HHHHHH-ccCcchhhhhHHHHHHHhhhccc
Confidence 577777887766655432110 112222 11111 123444555554443
Q ss_pred ccCCCchHhhHHHHHHHHHHHhcccccchH--HHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHH-HHHHHHHHHH
Q 003081 368 SGIGLNTRVGVASFISLLVQKIGMDIKPYT--SMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPS-QAQKLIEETA 444 (850)
Q Consensus 368 ~~~~~~tr~~a~~~l~~L~~~~~~~~~py~--~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~-~v~~li~~l~ 444 (850)
....| ..+.+.+++. .....-.... ..+++.+...+ +..+++|.-+++.++..+ .+.. .+...++.+.
T Consensus 203 ~~~~~-~q~~il~~l~----~~~~~~~~~~~~~~~i~~l~~~l-~s~~~~V~~e~~~~i~~l---~~~~~~~~~~~~~L~ 273 (526)
T PF01602_consen 203 DPDPW-LQIKILRLLR----RYAPMEPEDADKNRIIEPLLNLL-QSSSPSVVYEAIRLIIKL---SPSPELLQKAINPLI 273 (526)
T ss_dssp CCSHH-HHHHHHHHHT----TSTSSSHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH---SSSHHHHHHHHHHHH
T ss_pred ccchH-HHHHHHHHHH----hcccCChhhhhHHHHHHHHHHHh-hccccHHHHHHHHHHHHh---hcchHHHHhhHHHHH
Confidence 32111 2333444432 2221111222 46888888888 577888876666666544 3333 4667777777
Q ss_pred Hhhc-CCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHH
Q 003081 445 ALHI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSL 523 (850)
Q Consensus 445 ~~~~-~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~l 523 (850)
..+. .|++.|..+...+..++...++.+. .....++....+++.++|....+++..++.. .. ...|++.
T Consensus 274 ~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~----~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~--~n----~~~Il~e 343 (526)
T PF01602_consen 274 KLLSSSDPNVRYIALDSLSQLAQSNPPAVF----NQSLILFFLLYDDDPSIRKKALDLLYKLANE--SN----VKEILDE 343 (526)
T ss_dssp HHHTSSSHHHHHHHHHHHHHHCCHCHHHHG----THHHHHHHHHCSSSHHHHHHHHHHHHHH--H--HH----HHHHHHH
T ss_pred HHhhcccchhehhHHHHHHHhhcccchhhh----hhhhhhheecCCCChhHHHHHHHHHhhcccc--cc----hhhHHHH
Confidence 7775 4666888888888888777644332 1222234445677889998888888776653 22 3445566
Q ss_pred HHHhhc-CCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCc
Q 003081 524 ICEGIA-SSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTT 602 (850)
Q Consensus 524 l~~~L~-d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~ 602 (850)
+...+. .++.++|..+..+++.++.........+++.++..+.. ........++..+..++.+.. ..
T Consensus 344 L~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~----~~~~~~~~~~~~i~~ll~~~~--------~~ 411 (526)
T PF01602_consen 344 LLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEI----SGDYVSNEIINVIRDLLSNNP--------EL 411 (526)
T ss_dssp HHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHC----TGGGCHCHHHHHHHHHHHHST--------TT
T ss_pred HHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhh----ccccccchHHHHHHHHhhcCh--------hh
Confidence 666663 44778999999999999999877666666666666654 223456677777777775432 23
Q ss_pred hHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHcCC
Q 003081 603 PFAIVDMVSSACRK-KIKKYREAAFSCLEQVIKAFRD 638 (850)
Q Consensus 603 ~~~i~~~l~~e~~r-~~~~~R~~Al~~Lg~l~~~~~~ 638 (850)
...+++.+...... ..+.+++.+++++|++....++
T Consensus 412 ~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~ 448 (526)
T PF01602_consen 412 REKILKKLIELLEDISSPEALAAAIWILGEYGELIEN 448 (526)
T ss_dssp HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc
Confidence 45566666666554 6788999999999999998865
No 26
>PTZ00429 beta-adaptin; Provisional
Probab=99.11 E-value=3.6e-06 Score=101.15 Aligned_cols=419 Identities=12% Similarity=0.056 Sum_probs=252.8
Q ss_pred HhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhc
Q 003081 130 KNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMD 209 (850)
Q Consensus 130 ~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ld 209 (850)
...+.++..+...+..+- -+..+++++++++.+++-.+|.-+...+.......+ ++ .--.+..+.+=+.
T Consensus 47 ~~kk~alKkvIa~mt~G~------DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~p--el---alLaINtl~KDl~ 115 (746)
T PTZ00429 47 YRKKAAVKRIIANMTMGR------DVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQP--EK---ALLAVNTFLQDTT 115 (746)
T ss_pred HHHHHHHHHHHHHHHCCC------CchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCh--HH---HHHHHHHHHHHcC
Confidence 345777888777776432 234556666678888899999999999888755432 11 1233445556678
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccc
Q 003081 210 DIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPH 289 (850)
Q Consensus 210 D~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~ 289 (850)
|..+.||.-|. ++++.+- ...+++.+++.+. +++.+.++-||+.|+.++.++.+..+..+..
T Consensus 116 d~Np~IRaLAL---RtLs~Ir-------------~~~i~e~l~~~lk-k~L~D~~pYVRKtAalai~Kly~~~pelv~~- 177 (746)
T PTZ00429 116 NSSPVVRALAV---RTMMCIR-------------VSSVLEYTLEPLR-RAVADPDPYVRKTAAMGLGKLFHDDMQLFYQ- 177 (746)
T ss_pred CCCHHHHHHHH---HHHHcCC-------------cHHHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHhhCcccccc-
Confidence 99999999875 4443321 2346677777765 6888999999999999999998766543211
Q ss_pred hHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcC--hhhHhhHHHHHHHHHh
Q 003081 290 LSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVD--TESLDQLVPHLARLVR 367 (850)
Q Consensus 290 lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld--~~~l~~lvp~L~~~lk 367 (850)
..+++.|.++|++.+|.++.-. + -++..+...-. -+.....+.+++..+.
T Consensus 178 -~~~~~~L~~LL~D~dp~Vv~nA-------------l--------------~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~ 229 (746)
T PTZ00429 178 -QDFKKDLVELLNDNNPVVASNA-------------A--------------AIVCEVNDYGSEKIESSNEWVNRLVYHLP 229 (746)
T ss_pred -cchHHHHHHHhcCCCccHHHHH-------------H--------------HHHHHHHHhCchhhHHHHHHHHHHHHHhh
Confidence 1345566666777776653210 0 00111110000 0011223344444443
Q ss_pred ccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHH----H
Q 003081 368 SGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEE----T 443 (850)
Q Consensus 368 ~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~----l 443 (850)
....|. .+...++ |+ +....-..-...++..+.+.+ +..|++|.=+++.++-++.....++.+...+.+ +
T Consensus 230 e~~EW~-Qi~IL~l---L~-~y~P~~~~e~~~il~~l~~~L-q~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pL 303 (746)
T PTZ00429 230 ECNEWG-QLYILEL---LA-AQRPSDKESAETLLTRVLPRM-SHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTAL 303 (746)
T ss_pred cCChHH-HHHHHHH---HH-hcCCCCcHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHH
Confidence 321222 2223333 32 222122233557888888888 678999988888887777655444544444433 3
Q ss_pred HHhhcCCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHH
Q 003081 444 AALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSL 523 (850)
Q Consensus 444 ~~~~~~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~l 523 (850)
..+...+++.|..+...+..+....|..|.++...|+ .+.++..+++..-.+++-.++... -+.+|+.-
T Consensus 304 v~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff-----~~~~Dp~yIK~~KLeIL~~Lane~------Nv~~IL~E 372 (746)
T PTZ00429 304 LTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFY-----VRYSDPPFVKLEKLRLLLKLVTPS------VAPEILKE 372 (746)
T ss_pred HHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhh-----cccCCcHHHHHHHHHHHHHHcCcc------cHHHHHHH
Confidence 4443456777888887788888888888877655432 344444568877778887776642 23556666
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCch
Q 003081 524 ICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTP 603 (850)
Q Consensus 524 l~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~ 603 (850)
+..+..+.+.++++.+.+++|.+|.+++.... .++..|.+-+..+. +....++..+..+..+..+ .
T Consensus 373 L~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~----~cV~~Ll~ll~~~~-~~v~e~i~vik~IlrkyP~--------~- 438 (746)
T PTZ00429 373 LAEYASGVDMVFVVEVVRAIASLAIKVDSVAP----DCANLLLQIVDRRP-ELLPQVVTAAKDIVRKYPE--------L- 438 (746)
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhChHHHH----HHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHCcc--------H-
Confidence 77777888999999999999999988765444 34444444443222 1233345555555543221 1
Q ss_pred HHHHHHHHHHH--h-hcCHHHHHHHHHHHHHHHHHcC
Q 003081 604 FAIVDMVSSAC--R-KKIKKYREAAFSCLEQVIKAFR 637 (850)
Q Consensus 604 ~~i~~~l~~e~--~-r~~~~~R~~Al~~Lg~l~~~~~ 637 (850)
.+++.++... . =.++..|...+|.+|+++...+
T Consensus 439 -~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~ 474 (746)
T PTZ00429 439 -LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIE 474 (746)
T ss_pred -HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHh
Confidence 1334444332 1 1456778888999999987664
No 27
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=2.7e-05 Score=92.79 Aligned_cols=597 Identities=12% Similarity=0.105 Sum_probs=289.8
Q ss_pred HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH
Q 003081 151 IDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLT 230 (850)
Q Consensus 151 i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~ 230 (850)
++++++.+++.|+++++|.+.+||-++|..+|.+...-+++-....+..++. +|.-.++.+. =. .+|-.+++..
T Consensus 335 v~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid-~~~p~e~~~a--WH---gacLaLAELA 408 (1133)
T KOG1943|consen 335 VPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVID-LFNPAEDDSA--WH---GACLALAELA 408 (1133)
T ss_pred cHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHH-hcCcCCchhH--HH---HHHHHHHHHH
Confidence 5678899999999999999999999999999999887775444444555544 3332332211 11 2233455444
Q ss_pred HHhhhcccCcchhHHhHHHHhHHHHhh-------ccCCCchhHHHHHHHHHHHHHHHhc-CcccccchHHHHHHHHHhcc
Q 003081 231 IRLCDVTLTEISDARQSMDIVLPFLLA-------EGILSKVDSISKASIGVVMKLVKGA-GIAIRPHLSDLVSCMLESLS 302 (850)
Q Consensus 231 ~r~~~~~~~~~~~~~~~l~~lLP~Ll~-------~gL~s~~~evr~~a~~~L~~la~~~-g~~l~P~lp~Lvp~LL~~Ls 302 (850)
.|-... ...+..++|.++. +|-.+....||..|+-++-.+++.. ...++|++..|.+.|+....
T Consensus 409 ~rGlLl--------ps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~Al 480 (1133)
T KOG1943|consen 409 LRGLLL--------PSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVAL 480 (1133)
T ss_pred hcCCcc--------hHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHh
Confidence 443321 1245667777762 2434556789999999988998876 46799999999999987653
Q ss_pred ccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHh--ccCCCchHhhHHH
Q 003081 303 SLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVR--SGIGLNTRVGVAS 380 (850)
Q Consensus 303 ~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk--~~~~~~tr~~a~~ 380 (850)
.+|++ | --|.+.+ |+...++..+. .|.=+..+. +-+.+..|..|-.
T Consensus 481 -FDrev-n-----------------cRRAAsA-------AlqE~VGR~~n------~p~Gi~Lis~~dy~sV~~rsNcy~ 528 (1133)
T KOG1943|consen 481 -FDREV-N-----------------CRRAASA-------ALQENVGRQGN------FPHGISLISTIDYFSVTNRSNCYL 528 (1133)
T ss_pred -cCchh-h-----------------HhHHHHH-------HHHHHhccCCC------CCCchhhhhhcchhhhhhhhhHHH
Confidence 22222 2 1121111 22222211100 000000110 1122334555555
Q ss_pred HHHHHHHHhcccccchHHHHHHHHHHh-hhhcCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhh-cCCchhhHHHH
Q 003081 381 FISLLVQKIGMDIKPYTSMLLRLLFPV-VKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALH-IDDKNSQISCA 458 (850)
Q Consensus 381 ~l~~L~~~~~~~~~py~~~lL~~Ll~~-l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~-~~d~~~r~~~~ 458 (850)
.++.-+. .+..|...+++.++.. + .+-+..+|+.++.++..+....++....-+++++.+.. ..|..-|..+.
T Consensus 529 ~l~~~ia----~~~~y~~~~f~~L~t~Kv-~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~ 603 (1133)
T KOG1943|consen 529 DLCVSIA----EFSGYREPVFNHLLTKKV-CHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVF 603 (1133)
T ss_pred HHhHHHH----hhhhHHHHHHHHHHhccc-ccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhH
Confidence 5544333 3445777777776654 5 46778999999999999776666555445555555544 35666665444
Q ss_pred HHHHHH----Hhhchhh---hh---hhHhhHhHHHHHHhcCCc--hHHHHHHHHHHHHhcCCChhhHHhhH-HHHHHHHH
Q 003081 459 ILLKSY----SSVASDV---LS---GYHAVIVPVIFISRFEDD--KYVSDLFEELWEENTSGDRVTLQLYL-GEIVSLIC 525 (850)
Q Consensus 459 ~~l~al----~~~~~~~---f~---~~~~~vlP~l~~~~~d~~--~~v~~~~~~v~~~l~~~~~~~i~~yl-~eIl~ll~ 525 (850)
.+.+.+ -+..|-. +. .....++|.++....+.- .-.+....+..+.+.-+-......++ +....++.
T Consensus 604 la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~ 683 (1133)
T KOG1943|consen 604 LAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLA 683 (1133)
T ss_pred HHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Confidence 333333 2222111 11 112224444443333321 11222222322222222111111222 22445566
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHh--CcchhhhHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHhcccccccCCCCc
Q 003081 526 EGIASSSWSSKRKSAKAICKLGEIL--GESLSNYHHVLLESIMKEVPGR-LWEGKDALLYAIGSISTSCHKDISAEDPTT 602 (850)
Q Consensus 526 ~~L~d~s~~vr~~aa~alg~la~~~--g~~l~~~l~~llp~L~~~L~~r-~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~ 602 (850)
+++++++ .+|..+..++++++..+ ++.-. -..++...+..+..- +...|..+.-+++.+.. .+- +-.+
T Consensus 684 ~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~--~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~----~~i--~~~~ 754 (1133)
T KOG1943|consen 684 QNLTLPN-QIRDAAVSAVSDLVSTYVKADEGE--EAPLITRYLSRLTKCSEERIRRGLILALGVLPS----ELI--HRHL 754 (1133)
T ss_pred HhhcchH-HHHHHHHHHHHHHHHHHHhcCchh--hhHHHHHHHHHhcCchHHHHHHHHHHHHccCcH----Hhh--chHH
Confidence 6667777 89999999999999753 22111 112333333333221 22223333333332211 100 0011
Q ss_pred hHHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHcC---CchhHHhHHHHHHhhcccccccCCCCCCCCCCCcccchhhh
Q 003081 603 PFAIVDMVSSA-CRKKIKKYREAAFSCLEQVIKAFR---DPKFFNIIFPLLFEMCGSTALNKSGQVPLPSDASKEESADE 678 (850)
Q Consensus 603 ~~~i~~~l~~e-~~r~~~~~R~~Al~~Lg~l~~~~~---~~~~~~iv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (850)
.+.+.+.+..- ..+....-|+..+..+..++..+. ..+..+.+...|..-++... .|+.+ |--.=
T Consensus 755 q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYt----------td~rG-DVGsw 823 (1133)
T KOG1943|consen 755 QEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYT----------TDSRG-DVGSW 823 (1133)
T ss_pred HHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc----------cccCc-cHHHH
Confidence 22222222211 112245668888888888888776 22334444444444444322 22322 10000
Q ss_pred cccccHHHHHHhhhhhc-cccccccHHHHHHHHHHHH-HhhcCCCCCchHHHHHHHHHHHHHHH------------Hhhc
Q 003081 679 SVSAPLDKVLDCVSSCI-HVAHVNDIIEQEKNLVQLF-TISLSPGFPWTVKMSAFSSIKELCSR------------LQKT 744 (850)
Q Consensus 679 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~------------~~~~ 744 (850)
-|.+++.++-.+..... ++-..++.++-... | +.... +--++.|-.+++|+..+.-. +.+.
T Consensus 824 VReaAm~al~~~~~~l~~p~~ld~~~i~~~~~----~~vqQ~v-eKIdrlre~a~~~~~qi~~~~~~i~~~~~~~~L~ei 898 (1133)
T KOG1943|consen 824 VREAAMKALSSLLDTLSSPKLLDEDSINRIIR----YFVQQAV-EKIDRLRELAASALNQIVVHSPSIPHFRHIEKLEEI 898 (1133)
T ss_pred HHHHHHHHHHhhhhhhcCcccccHHHHHHHHH----HHHHHhH-HHHHHHHHHHHHHHhceeecCCCCCcchHHHHHHhh
Confidence 24444443333333333 33344444333222 1 22222 22334466666666554332 2211
Q ss_pred cc-CCCCCCC--CcChhHHH------HHHHHhhCchhhhhhhhhhhhhHHHHHHHHHHHHHHH-hccccccccCccchHH
Q 003081 745 LD-DSAGTSP--HAGISSLI------QELFHTVSPKVVECISTVKIAQVHISASECLLEICKL-FRQISSVYSSNIGIKG 814 (850)
Q Consensus 745 ~~-~~~~~~~--~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~ 814 (850)
-. ++....+ +.+.-.+. ..+-.++.++++-.+ ..-..++++.|.++.+++++. ++.+...+.-.+.+.+
T Consensus 899 ~~~~~a~~~~~~~~~~f~L~~~Ll~~~~y~~~v~lGl~vs~-ggl~esl~k~a~q~l~e~~R~~~~dp~t~~~~~stl~~ 977 (1133)
T KOG1943|consen 899 FPRDYANVPWALPPTLFPLNSSLLELPRYYEEVLLGLVVSL-GGLTESLIKLAKQALLEYVRDENSDPKTIGSRDSTLLQ 977 (1133)
T ss_pred cCcccccCCCcccchhhhHHHHHHhhHHHHHHHhhhhHHHh-hhhHHHHHHHHHHHHHHHHHHhhcCcccccchHHHHHH
Confidence 00 1111111 11211111 111122222322222 234566778899999999862 1333323344455666
Q ss_pred HHHHHHHHhh
Q 003081 815 ELVHQCEMEK 824 (850)
Q Consensus 815 ~~~~~~~~~~ 824 (850)
-+..++-.||
T Consensus 978 ~~~~~l~~er 987 (1133)
T KOG1943|consen 978 LIEEALLNER 987 (1133)
T ss_pred HHHHHHHHHH
Confidence 6666666666
No 28
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.05 E-value=5e-07 Score=107.32 Aligned_cols=539 Identities=13% Similarity=0.129 Sum_probs=328.5
Q ss_pred hhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhh
Q 003081 114 LRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQV 193 (850)
Q Consensus 114 L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l 193 (850)
...++|++-... |.+-.|+.++..=.+.+..+ .-..+|-.-+++.+.....+.+|-||+++..-+..++.+.+.+..
T Consensus 119 r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~--v~~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~ 195 (759)
T KOG0211|consen 119 RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPD--VGGPEYAHMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKL 195 (759)
T ss_pred hhhhhhHHHHhc-cchhHHHHHHHHHhcccchh--ccchhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 457889988877 78888888876544444433 123445556677777777889999999999999999998887777
Q ss_pred hHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHH
Q 003081 194 GKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIG 273 (850)
Q Consensus 194 ~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~ 273 (850)
..|+..++..+... ..|..-.++|..++....+.- ...+-..+.|..- +--.++.+.||..+..
T Consensus 196 ~~~lv~l~~~l~~~------d~~~sr~sacglf~~~~~~~~---------~~~vk~elr~~~~-~lc~d~~~~Vr~~~a~ 259 (759)
T KOG0211|consen 196 REHLVPLLKRLATG------DWFQSRLSACGLFGKLYVSLP---------DDAVKRELRPIVQ-SLCQDDTPMVRRAVAS 259 (759)
T ss_pred HHHHHHHHHHccch------hhhhcchhhhhhhHHhccCCC---------hHHHHHHHHHHHH-hhccccchhhHHHHHh
Confidence 66655554443322 333333334444443322221 1234456666543 2123567899999999
Q ss_pred HHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcCh-
Q 003081 274 VVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDT- 352 (850)
Q Consensus 274 ~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~- 352 (850)
-++.+++..+.+ --...++|.+.++..+ +-|..|..++ +++....++.+.
T Consensus 260 ~l~~~a~~~~~~--~~~s~v~~~~~~L~~D---------------------dqdsVr~~a~------~~~~~l~~l~~~~ 310 (759)
T KOG0211|consen 260 NLGNIAKVLESE--IVKSEVLPTLIQLLRD---------------------DQDSVREAAV------ESLVSLLDLLDDD 310 (759)
T ss_pred hhHHHHHHHHHH--HHHhhccHHHhhhhhc---------------------chhhHHHHHH------HHHHHHHHhcCCc
Confidence 999998877652 2233444455444432 2245554332 344444555543
Q ss_pred -hhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhC
Q 003081 353 -ESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYA 431 (850)
Q Consensus 353 -~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~ 431 (850)
+.-..+.+.+.+...+. .+..+-........|....+... .-..+.......+ .|....+|.+.+.-...+....
T Consensus 311 ~d~~~~~~~~l~~~~~d~-~~~v~~~~~~~~~~L~~~~~~~~--~~~~~~~~~~~l~-~~~~~e~r~a~a~~~~~l~~~l 386 (759)
T KOG0211|consen 311 DDVVKSLTESLVQAVEDG-SWRVSYMVADKFSELSSAVGPSA--TRTQLVPPVSNLL-KDEEWEVRYAIAKKVQKLACYL 386 (759)
T ss_pred hhhhhhhhHHHHHHhcCh-hHHHHHHHhhhhhhHHHHhcccc--CcccchhhHHHHh-cchhhhhhHHhhcchHHHhhhc
Confidence 33455777777776664 45566666666666666665422 2223444555555 5777788888777776666554
Q ss_pred CHH-----HHHHHHHHHHHhhcC-CchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHH-
Q 003081 432 TPS-----QAQKLIEETAALHID-DKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEE- 504 (850)
Q Consensus 432 ~~~-----~v~~li~~l~~~~~~-d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~- 504 (850)
+.+ ..+..++.+.....+ +...|...+..+..+....| ...-...++|.......|..+.|+....+....
T Consensus 387 ~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~ 464 (759)
T KOG0211|consen 387 NASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLL 464 (759)
T ss_pred CcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHH
Confidence 421 122334555444432 23334444433333333333 234456678877666777788888765532222
Q ss_pred -hcCCChhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHH
Q 003081 505 -NTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYA 583 (850)
Q Consensus 505 -l~~~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~a 583 (850)
.+... ..+..+.+..++.+...-.+.+|.+|......+-.++...|..|- -+.+-+.+..-+.++-...++.+...
T Consensus 465 ~~v~~v-~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~--~~~~~~l~~~~l~d~v~~Ir~~aa~~ 541 (759)
T KOG0211|consen 465 EEVNDV-IGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFF--DEKLAELLRTWLPDHVYSIREAAARN 541 (759)
T ss_pred HhccCc-ccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHh--hHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 22222 235677788888888888888999999999999999988884322 23355556666777777889999999
Q ss_pred HHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCchhHHhHHHHHHhhcccccccCCCC
Q 003081 584 IGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGSTALNKSGQ 663 (850)
Q Consensus 584 L~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~~~~~~~iv~~~l~~~~~~~~~~~~~~ 663 (850)
+..++...+ .-| ....+++-+.....+.+..+|+..+.++..++.+++.+-+.+.+.|.+..+..
T Consensus 542 l~~l~~~~G-~~w-----~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~--------- 606 (759)
T KOG0211|consen 542 LPALVETFG-SEW-----ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVK--------- 606 (759)
T ss_pred hHHHHHHhC-cch-----hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhcc---------
Confidence 999988776 222 45677777777777778999999999999999999887677777788877754
Q ss_pred CCCCCCCcccchhhhcccccHHHHHHhhhhhccccccccHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHh
Q 003081 664 VPLPSDASKEESADESVSAPLDKVLDCVSSCIHVAHVNDIIEQEKNLVQLFTISLSPGFPWTVKMSAFSSIKELCSRLQ 742 (850)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 742 (850)
|.... -|-. ..+.+.-+.+.+.. ...+....+.+.+...+...+||.++..+...+.....
T Consensus 607 ----D~van------VR~n-vak~L~~i~~~L~~-------~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~~ 667 (759)
T KOG0211|consen 607 ----DPVAN------VRIN-VAKHLPKILKLLDE-------SVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELSRL 667 (759)
T ss_pred ----CCchh------hhhh-HHHHHHHHHhhcch-------HHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHH
Confidence 11111 1111 11122222222211 11122222333444458888888888888777765544
No 29
>PTZ00429 beta-adaptin; Provisional
Probab=99.03 E-value=3.6e-06 Score=101.09 Aligned_cols=428 Identities=10% Similarity=0.076 Sum_probs=241.3
Q ss_pred hHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhH
Q 003081 116 LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGK 195 (850)
Q Consensus 116 ~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~ 195 (850)
-.+..|.+-+.||||.||-.+.+....+. +++..+.+++.+.+++.|+++-||..|+.|+..+.+..+ +.+..
T Consensus 105 LaINtl~KDl~d~Np~IRaLALRtLs~Ir------~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p-elv~~ 177 (746)
T PTZ00429 105 LAVNTFLQDTTNSSPVVRALAVRTMMCIR------VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM-QLFYQ 177 (746)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHcCC------cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc-ccccc
Confidence 46888888889999999999887655543 456778899999999999999999999999999987443 21110
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHH
Q 003081 196 HLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVV 275 (850)
Q Consensus 196 ~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L 275 (850)
..+.+.+..+++|..+.|...|..++..+... ++. .. ......+.-|+. .+.+-++=.+-..++++
T Consensus 178 --~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~-----~~~-----~l-~l~~~~~~~Ll~-~L~e~~EW~Qi~IL~lL 243 (746)
T PTZ00429 178 --QDFKKDLVELLNDNNPVVASNAAAIVCEVNDY-----GSE-----KI-ESSNEWVNRLVY-HLPECNEWGQLYILELL 243 (746)
T ss_pred --cchHHHHHHHhcCCCccHHHHHHHHHHHHHHh-----Cch-----hh-HHHHHHHHHHHH-HhhcCChHHHHHHHHHH
Confidence 02233344557899999988877665555321 100 00 111112222221 22221122233444444
Q ss_pred HHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhc---Ch
Q 003081 276 MKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVV---DT 352 (850)
Q Consensus 276 ~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~l---d~ 352 (850)
.. ..+.=....-.++..+...|++..+.+ .++++.-++.+. +.
T Consensus 244 ~~----y~P~~~~e~~~il~~l~~~Lq~~N~AV------------------------------Vl~Aik~il~l~~~~~~ 289 (746)
T PTZ00429 244 AA----QRPSDKESAETLLTRVLPRMSHQNPAV------------------------------VMGAIKVVANLASRCSQ 289 (746)
T ss_pred Hh----cCCCCcHHHHHHHHHHHHHhcCCCHHH------------------------------HHHHHHHHHHhcCcCCH
Confidence 22 221112223345555555554433222 233333333222 12
Q ss_pred hhH----hhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHh
Q 003081 353 ESL----DQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVL 428 (850)
Q Consensus 353 ~~l----~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~ 428 (850)
+.+ ..+.+.++.+..+ ..+.|-.+.+.|..++.+.+.-|.++ ++.++-.. +|++. |+... +.-+.
T Consensus 290 ~~~~~~~~rl~~pLv~L~ss--~~eiqyvaLr~I~~i~~~~P~lf~~~----~~~Ff~~~-~Dp~y-IK~~K---LeIL~ 358 (746)
T PTZ00429 290 ELIERCTVRVNTALLTLSRR--DAETQYIVCKNIHALLVIFPNLLRTN----LDSFYVRY-SDPPF-VKLEK---LRLLL 358 (746)
T ss_pred HHHHHHHHHHHHHHHHhhCC--CccHHHHHHHHHHHHHHHCHHHHHHH----HHhhhccc-CCcHH-HHHHH---HHHHH
Confidence 222 2233444444322 45677788888888888877666554 44454444 56654 66544 45555
Q ss_pred hhCCHHHHHHHHHHHHHhhc-CCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcC
Q 003081 429 KYATPSQAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTS 507 (850)
Q Consensus 429 ~~~~~~~v~~li~~l~~~~~-~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~ 507 (850)
+.+.++.+..++.++.+... .|.+.+..+..+++.++...+.....+...++.++ ....+.+.+ ...+..++..
T Consensus 359 ~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll----~~~~~~v~e-~i~vik~Ilr 433 (746)
T PTZ00429 359 KLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIV----DRRPELLPQ-VVTAAKDIVR 433 (746)
T ss_pred HHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHh----cCCchhHHH-HHHHHHHHHH
Confidence 66777778888877776333 35566777777778777655554445555554433 222223332 2233334333
Q ss_pred CChhhHHhhHHHHHHHHHHhh---cCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 003081 508 GDRVTLQLYLGEIVSLICEGI---ASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAI 584 (850)
Q Consensus 508 ~~~~~i~~yl~eIl~ll~~~L---~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL 584 (850)
..+. .| ++..+...+ .=.+...|.+..-.||+.+..+.. .+.++..+++.+...+.+.|..+|.+.
T Consensus 434 kyP~---~~---il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~-----a~~~L~~~i~~f~~E~~~VqlqlLta~ 502 (746)
T PTZ00429 434 KYPE---LL---MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN-----GKDIIQRFIDTIMEHEQRVQLAILSAA 502 (746)
T ss_pred HCcc---HH---HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh-----HHHHHHHHHhhhccCCHHHHHHHHHHH
Confidence 2211 11 333333322 113456788778889988876543 355666666777666778899999999
Q ss_pred HHHHHhcccccccCCCCchHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHH
Q 003081 585 GSISTSCHKDISAEDPTTPFAIVDMVSSACRK-KIKKYREAAFSCLEQVI 633 (850)
Q Consensus 585 ~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r-~~~~~R~~Al~~Lg~l~ 633 (850)
+.+....... ....+..++.+.+++ .++++|-.|+-- |+++
T Consensus 503 vKlfl~~p~~-------~~~~l~~vL~~~t~~~~d~DVRDRA~~Y-~rLL 544 (746)
T PTZ00429 503 VKMFLRDPQG-------MEPQLNRVLETVTTHSDDPDVRDRAFAY-WRLL 544 (746)
T ss_pred HHHHhcCcHH-------HHHHHHHHHHHHHhcCCChhHHHHHHHH-HHHH
Confidence 9888654321 123344444455443 678999999753 3444
No 30
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=0.0002 Score=85.69 Aligned_cols=658 Identities=12% Similarity=0.096 Sum_probs=344.5
Q ss_pred cchHHHHHHH-hhhcCCchHHHHHHHHhc--cchhhhhhhhHHhhHHHHHHHh------hh--hhch--hhhhHHHHHHh
Q 003081 57 LSTYKELCNL-ANEMGQPDLIYKFMDLAN--YQVSLNSKRGAAFGFSKIAKQA------GD--ALKP--HLRLLIPKLVR 123 (850)
Q Consensus 57 ~styk~l~~l-A~~~g~p~lv~~fm~la~--~~~~w~sr~gAa~gl~~I~~~~------~~--~l~p--~L~~lvp~L~r 123 (850)
+.+||-+..+ =.++.+=+.++..+.-.+ +..+|..|-+-..=|+.++-.. ++ ..+| .+.+|+.+...
T Consensus 104 vrgyK~v~k~fPh~V~~Le~il~lL~~~npss~~~~~~ryilLlWLsvlllnPF~l~rlD~s~~~~kt~~i~rI~~~~~~ 183 (1133)
T KOG1943|consen 104 VRGYKAVLKLFPHQVSDLEPILDLLERQNPSSFSDWETRYILLLWLSVLLLNPFDLSRLDESLTFDKTNVILRILSFFEN 183 (1133)
T ss_pred hccchhhHHhCCcHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHcCCCcccccCcccccCCchHHHHHHHHHHH
Confidence 4445544332 223333345555555332 1234888877766666655432 11 1222 24555555433
Q ss_pred hcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChh--HHHHHHHHHHHHHccCCchhhhHHHHHHH
Q 003081 124 FQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWR--SREASCLSLADIIQGRKFDQVGKHLRRIW 201 (850)
Q Consensus 124 ~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wR--VReaa~~Al~~Ll~~~~~~~l~~~L~~i~ 201 (850)
|.--.. ..|++++-+..-+.+-+ +..+ .+...+..++........+ +.-+...++..++...+-+.+.+|....+
T Consensus 184 Yl~~~~-~~r~~aalllsk~~sR~-D~~~-~~~~Fl~~~l~~~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~ 260 (1133)
T KOG1943|consen 184 YLISSG-ILRRSAALLLSKLFSRT-DVKD-LLLSFLDWLLDCPSTETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGL 260 (1133)
T ss_pred HHhccc-hhHHHHHHHHHHHcccc-cHHH-HHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhh
Confidence 433322 56666666655555322 2333 2555666666665544444 33677788888888777777888877777
Q ss_pred HHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHHhhh-----------------ccc-------------CcchhHHhHHH
Q 003081 202 TAAFRAM--DDIKETVRTAGDKLCRSVTSLTIRLCD-----------------VTL-------------TEISDARQSMD 249 (850)
Q Consensus 202 ~~l~~~l--dD~k~~VR~aA~~~~~~L~~~~~r~~~-----------------~~~-------------~~~~~~~~~l~ 249 (850)
..+-.+. +|.+.-+|+--.++...+|-+++.-.. +.. ....+..++++
T Consensus 261 r~L~~~~~~~d~~~llrKllvKl~QRiGlv~l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~eivE 340 (1133)
T KOG1943|consen 261 RMLSVCRESNDGQSLLRKLLVKLVQRIGLVSLKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQDDDEGEDVPEIVE 340 (1133)
T ss_pred HhhcccccccccHhHHHHHHHHHHHHhhheecCCCCcchhhhcccchhhhccCccccccCcccccccccccccccHHHHH
Confidence 6654443 344456677666666655533221000 000 01123446788
Q ss_pred HhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHH
Q 003081 250 IVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENL 329 (850)
Q Consensus 250 ~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~ 329 (850)
.++-.|+ .|+.+....||=.++.-++++++..... -..+.+...++.++-.|+ +-.||-+
T Consensus 341 ~vie~Ll-s~l~d~dt~VrWSaAKg~grvt~rlp~~---Lad~vi~svid~~~p~e~----~~aWHga------------ 400 (1133)
T KOG1943|consen 341 FVIEHLL-SALSDTDTVVRWSAAKGLGRVTSRLPPE---LADQVIGSVIDLFNPAED----DSAWHGA------------ 400 (1133)
T ss_pred HHHHHHH-HhccCCcchhhHHHHHHHHHHHccCcHH---HHHHHHHHHHHhcCcCCc----hhHHHHH------------
Confidence 8888888 4888888999999999999998777643 233445555554432221 1122210
Q ss_pred HHhhccCCcHHHHHHHHH--hhcChhhHhhHHHHHHHHHh-------ccCCCchHhhHHHHHHHHHHHh-cccccchHHH
Q 003081 330 RISIAKGSPMWDTLDLCI--NVVDTESLDQLVPHLARLVR-------SGIGLNTRVGVASFISLLVQKI-GMDIKPYTSM 399 (850)
Q Consensus 330 r~~~~~~s~l~eal~~~~--~~ld~~~l~~lvp~L~~~lk-------~~~~~~tr~~a~~~l~~L~~~~-~~~~~py~~~ 399 (850)
.=++..+. +.+-...++.++|.+++.+. ..+|-..|-+||-+++.++... +.+++||..+
T Consensus 401 ----------cLaLAELA~rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~ 470 (1133)
T KOG1943|consen 401 ----------CLALAELALRGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQS 470 (1133)
T ss_pred ----------HHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHH
Confidence 00122221 22233456788999888873 3456678889999999988765 4678999999
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCC-HH---HHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhchhhhhhh
Q 003081 400 LLRLLFPVVKEEKSAAAKRAFASACASVLKYAT-PS---QAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGY 475 (850)
Q Consensus 400 lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~-~~---~v~~li~~l~~~~~~d~~~r~~~~~~l~al~~~~~~~f~~~ 475 (850)
+...++.....||.-.+|++++.|+-..+-..+ .+ .+...+++ ++ -..|..|- ..++.. -..|..|
T Consensus 471 L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy----~s--V~~rsNcy---~~l~~~-ia~~~~y 540 (1133)
T KOG1943|consen 471 LASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDY----FS--VTNRSNCY---LDLCVS-IAEFSGY 540 (1133)
T ss_pred HHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcch----hh--hhhhhhHH---HHHhHH-HHhhhhH
Confidence 988866544479999999999998866543211 10 01111000 00 00021111 112111 1244555
Q ss_pred HhhHhHHHHHH-hcCCchHHHHHHHHHHHHhcCCChhhHH-hhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCc-
Q 003081 476 HAVIVPVIFIS-RFEDDKYVSDLFEELWEENTSGDRVTLQ-LYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGE- 552 (850)
Q Consensus 476 ~~~vlP~l~~~-~~d~~~~v~~~~~~v~~~l~~~~~~~i~-~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~- 552 (850)
...++.-++.. ...-|+.+|+.+...+..+..-....+. -|++++ +....+.+...|+....+.|.+....-.
T Consensus 541 ~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~l----ld~~ls~~~~~r~g~~la~~ev~~~~~~l 616 (1133)
T KOG1943|consen 541 REPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPL----LDSTLSKDASMRHGVFLAAGEVIGALRKL 616 (1133)
T ss_pred HHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhh----hhhhcCCChHHhhhhHHHHHHHHHHhhhh
Confidence 55555444332 3445788888877766654432211111 233333 3445567888999999999988864321
Q ss_pred --ch---hhh----HHHHHHHH-HHhcCCCChhhH-HHHHHHHHHHHHhcccccccCCCCch-HHHHHHHHHHHhhcCHH
Q 003081 553 --SL---SNY----HHVLLESI-MKEVPGRLWEGK-DALLYAIGSISTSCHKDISAEDPTTP-FAIVDMVSSACRKKIKK 620 (850)
Q Consensus 553 --~l---~~~----l~~llp~L-~~~L~~r~~~gK-e~vL~aL~~l~~~~~~~l~~~~~~~~-~~i~~~l~~e~~r~~~~ 620 (850)
.+ ... ++.++|.+ ...+ ..|+ +.+..+...+..++...-..-...++ +.....+..-....| .
T Consensus 617 ~~~~~~l~e~~i~~l~~ii~~~~~~~~----~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~ 691 (1133)
T KOG1943|consen 617 EPVIKGLDENRIAGLLSIIPPICDRYF----YRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-Q 691 (1133)
T ss_pred hhhhhhhHHHHhhhhhhhccHHHHHHh----ccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-H
Confidence 11 111 12222222 2222 1121 44555666666655421100000111 111222222222334 8
Q ss_pred HHHHHHHHHHHHHHHcC--Cchh-HHhHHHHHHhhcccccccCCCCCCCCCCCcccchhhhcccccHHHHHHhhhhhccc
Q 003081 621 YREAAFSCLEQVIKAFR--DPKF-FNIIFPLLFEMCGSTALNKSGQVPLPSDASKEESADESVSAPLDKVLDCVSSCIHV 697 (850)
Q Consensus 621 ~R~~Al~~Lg~l~~~~~--~~~~-~~iv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (850)
+|.+|++.+++++..+- ++.. .+++..+|....+ .+.. .... .+..+...++.
T Consensus 692 i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~--------------~~~~------~~r~----g~~lal~~lp~ 747 (1133)
T KOG1943|consen 692 IRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTK--------------CSEE------RIRR----GLILALGVLPS 747 (1133)
T ss_pred HHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcC--------------chHH------HHHH----HHHHHHccCcH
Confidence 99999999999999873 3333 3355555555533 1100 0111 11111121111
Q ss_pred cccccHHHHHHHHHHHHHhhcCCCC-CchHHHHHHHHHHHHHHHHhhcccCCCCCCCCcChhHHHHHHHHhhCchhhhhh
Q 003081 698 AHVNDIIEQEKNLVQLFTISLSPGF-PWTVKMSAFSSIKELCSRLQKTLDDSAGTSPHAGISSLIQELFHTVSPKVVECI 776 (850)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 776 (850)
....- .-++.+++.|+ ...|.- ...-|...+.++...++-+... .+....+.++..++..+|.=..|+=
T Consensus 748 ~~i~~--~~q~~lc~~~l-~~~p~d~~a~aR~~~V~al~~v~~~~~~~-------~~~~~~~k~~e~LL~~lddYttd~r 817 (1133)
T KOG1943|consen 748 ELIHR--HLQEKLCKLVL-ELLPSDAWAEARQQNVKALAHVCKTVTSL-------LFSESIEKFRETLLNALDDYTTDSR 817 (1133)
T ss_pred Hhhch--HHHHHHHHHHh-ccCcccccHHHHHHHHHHHHHHHHHHHHh-------hccccHHHHHHHHHHHHhhcccccC
Confidence 00000 00122455652 233333 3345555666677777666533 3445667888888888875544442
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhcc
Q 003081 777 STVKIAQVHISASECLLEICKLFRQ 801 (850)
Q Consensus 777 ~~~~~~~~r~~a~~~~~~~~~~~~~ 801 (850)
-++ =+-+|++|+.++..+.-.+..
T Consensus 818 GDV-GswVReaAm~al~~~~~~l~~ 841 (1133)
T KOG1943|consen 818 GDV-GSWVREAAMKALSSLLDTLSS 841 (1133)
T ss_pred ccH-HHHHHHHHHHHHHhhhhhhcC
Confidence 121 356889999999887655543
No 31
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.98 E-value=3.6e-09 Score=94.23 Aligned_cols=73 Identities=25% Similarity=0.289 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHH
Q 003081 149 RTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKL 222 (850)
Q Consensus 149 ~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~ 222 (850)
..+.+|++.|++.++.+++|++||||..||.|+.++..... +.+.+|+++||..++++..|+++.||.+|..+
T Consensus 19 ~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~-~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~L 91 (97)
T PF12755_consen 19 KDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR-GEILPYFNEIFDALCKLSADPDENVRSAAELL 91 (97)
T ss_pred HhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCchhHHHHHHHH
Confidence 34899999999999999999999999999999999997654 56778999999999999999999999998543
No 32
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.89 E-value=2.4e-07 Score=115.50 Aligned_cols=273 Identities=12% Similarity=0.070 Sum_probs=156.0
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcc
Q 003081 158 IFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVT 237 (850)
Q Consensus 158 Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~ 237 (850)
-++.|+..+.|++..||..|+.+|+++-. ++.++.+.+.++|....||.+|..++..++... .
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----~-- 684 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL----P-- 684 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----C--
Confidence 35677778889999999999998888621 245566667788999999988765554432110 0
Q ss_pred cCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhh
Q 003081 238 LTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAA 317 (850)
Q Consensus 238 ~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~ 317 (850)
....++. .|.+++++||..++..|+.+.. +. .+.|+..|.+.+|.
T Consensus 685 ---------~~~~L~~-----~L~~~d~~VR~~A~~aL~~~~~--~~---------~~~l~~~L~D~d~~---------- 729 (897)
T PRK13800 685 ---------PAPALRD-----HLGSPDPVVRAAALDVLRALRA--GD---------AALFAAALGDPDHR---------- 729 (897)
T ss_pred ---------chHHHHH-----HhcCCCHHHHHHHHHHHHhhcc--CC---------HHHHHHHhcCCCHH----------
Confidence 0012222 2345678899988888877621 00 11233344433222
Q ss_pred hcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchH
Q 003081 318 NAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYT 397 (850)
Q Consensus 318 ~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~ 397 (850)
.|..++..|..+ + ..
T Consensus 730 --------------------------------------------------------VR~~Av~aL~~~----~-~~---- 744 (897)
T PRK13800 730 --------------------------------------------------------VRIEAVRALVSV----D-DV---- 744 (897)
T ss_pred --------------------------------------------------------HHHHHHHHHhcc----c-Cc----
Confidence 222222222211 0 00
Q ss_pred HHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhc-CCchhhHHHHHHHHHHHhhchhhhhhhH
Q 003081 398 SMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYH 476 (850)
Q Consensus 398 ~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~-~d~~~r~~~~~~l~al~~~~~~~f~~~~ 476 (850)
+.+...+ .|+++.||..++.+++.+-..... -++.+...+. +|+..|..+...++.+.. +
T Consensus 745 ----~~l~~~l-~D~~~~VR~~aa~aL~~~~~~~~~-----~~~~L~~ll~D~d~~VR~aA~~aLg~~g~--~------- 805 (897)
T PRK13800 745 ----ESVAGAA-TDENREVRIAVAKGLATLGAGGAP-----AGDAVRALTGDPDPLVRAAALAALAELGC--P------- 805 (897)
T ss_pred ----HHHHHHh-cCCCHHHHHHHHHHHHHhccccch-----hHHHHHHHhcCCCHHHHHHHHHHHHhcCC--c-------
Confidence 1123445 577777777777777776432110 0222333332 344556666555444421 1
Q ss_pred hhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhh
Q 003081 477 AVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSN 556 (850)
Q Consensus 477 ~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~ 556 (850)
..+.+.+..+..|++..||..+.+.+..+.. ++-++.+...+.|++|.||+.|+.+|+.+. +
T Consensus 806 ~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~----- 867 (897)
T PRK13800 806 PDDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTDPHLDVRKAAVLALTRWP---G----- 867 (897)
T ss_pred chhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCCHHHHHHHHHHHhccC---C-----
Confidence 1122333445667777788877766654321 223466677778888888888888888751 1
Q ss_pred hHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 003081 557 YHHVLLESIMKEVPGRLWEGKDALLYAIG 585 (850)
Q Consensus 557 ~l~~llp~L~~~L~~r~~~gKe~vL~aL~ 585 (850)
-+...+.|..++.+.+.++|....+||.
T Consensus 868 -~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 868 -DPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred -CHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 1456677778888778888888887775
No 33
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.89 E-value=2.9e-07 Score=114.89 Aligned_cols=266 Identities=14% Similarity=0.134 Sum_probs=175.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcH
Q 003081 260 ILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPM 339 (850)
Q Consensus 260 L~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l 339 (850)
|.++++.||..++..|+++. -+..+|.|...|++.++.+.. .++
T Consensus 630 L~D~d~~VR~~Av~~L~~~~----------~~~~~~~L~~aL~D~d~~VR~---------------------~Aa----- 673 (897)
T PRK13800 630 LADPDPGVRRTAVAVLTETT----------PPGFGPALVAALGDGAAAVRR---------------------AAA----- 673 (897)
T ss_pred hcCCCHHHHHHHHHHHhhhc----------chhHHHHHHHHHcCCCHHHHH---------------------HHH-----
Confidence 45778899999999988762 256778888888766554432 111
Q ss_pred HHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHH
Q 003081 340 WDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRA 419 (850)
Q Consensus 340 ~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~ 419 (850)
+++..+..... -.+.+...+++. ...+|..+++.|..+- .+ . ...++..+ .|+++.||..
T Consensus 674 -~aL~~l~~~~~------~~~~L~~~L~~~-d~~VR~~A~~aL~~~~--~~-~--------~~~l~~~L-~D~d~~VR~~ 733 (897)
T PRK13800 674 -EGLRELVEVLP------PAPALRDHLGSP-DPVVRAAALDVLRALR--AG-D--------AALFAAAL-GDPDHRVRIE 733 (897)
T ss_pred -HHHHHHHhccC------chHHHHHHhcCC-CHHHHHHHHHHHHhhc--cC-C--------HHHHHHHh-cCCCHHHHHH
Confidence 12222211111 123455555553 4457777877776542 11 1 12455677 7999999999
Q ss_pred HHHHHHHHhhhCCHHHHHHHHHHHHHhhc-CCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHH
Q 003081 420 FASACASVLKYATPSQAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLF 498 (850)
Q Consensus 420 ~a~alg~L~~~~~~~~v~~li~~l~~~~~-~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~ 498 (850)
++.+++.+- ..+ .+...+. +|...|..++.+++.+....+ ..+|.+....+|+++.||...
T Consensus 734 Av~aL~~~~---~~~-------~l~~~l~D~~~~VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D~d~~VR~aA 795 (897)
T PRK13800 734 AVRALVSVD---DVE-------SVAGAATDENREVRIAVAKGLATLGAGGA--------PAGDAVRALTGDPDPLVRAAA 795 (897)
T ss_pred HHHHHhccc---CcH-------HHHHHhcCCCHHHHHHHHHHHHHhccccc--------hhHHHHHHHhcCCCHHHHHHH
Confidence 999998752 111 1223332 345678888877777643221 125555566778889999988
Q ss_pred HHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHH
Q 003081 499 EELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKD 578 (850)
Q Consensus 499 ~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe 578 (850)
...+..+... +.+.+.+...+.|++|.||..|+.+|+.+.. +..++.|...|.+.+|.+|.
T Consensus 796 ~~aLg~~g~~---------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~~~VR~ 856 (897)
T PRK13800 796 LAALAELGCP---------PDDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTDPHLDVRK 856 (897)
T ss_pred HHHHHhcCCc---------chhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCCHHHHH
Confidence 8777654221 1223456677899999999999999986532 34568888899999999999
Q ss_pred HHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 003081 579 ALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQ 631 (850)
Q Consensus 579 ~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~ 631 (850)
.+..+|+.+. .-+...+.+...+++.+..+|+.|..+|..
T Consensus 857 ~A~~aL~~~~-------------~~~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 857 AAVLALTRWP-------------GDPAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHhccC-------------CCHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 9999998751 014566777788888999999999998864
No 34
>PRK09687 putative lyase; Provisional
Probab=98.88 E-value=3.2e-07 Score=98.58 Aligned_cols=241 Identities=12% Similarity=0.032 Sum_probs=149.5
Q ss_pred hhhhhhhHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh-h
Q 003081 88 SLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQ-S 166 (850)
Q Consensus 88 ~w~sr~gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~-l 166 (850)
...-|..|+++|+.+-+ +.+++.+.+.+.|+++.||+.+..+.+.+-. +... .+..++.|... .
T Consensus 36 d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~-~~~~----~~~a~~~L~~l~~ 100 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGM-AKRC----QDNVFNILNNLAL 100 (280)
T ss_pred CHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-Cccc----hHHHHHHHHHHHh
Confidence 35677788888876532 2356666777899999999999999988753 2211 23445555544 5
Q ss_pred CCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHh
Q 003081 167 GSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQ 246 (850)
Q Consensus 167 ~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~ 246 (850)
.|++|.||.+++.|||.+-.... .+.+.++..+...+.|....||.+|..++ ++. + ...
T Consensus 101 ~D~d~~VR~~A~~aLG~~~~~~~-----~~~~~a~~~l~~~~~D~~~~VR~~a~~aL---g~~---------~----~~~ 159 (280)
T PRK09687 101 EDKSACVRASAINATGHRCKKNP-----LYSPKIVEQSQITAFDKSTNVRFAVAFAL---SVI---------N----DEA 159 (280)
T ss_pred cCCCHHHHHHHHHHHhccccccc-----ccchHHHHHHHHHhhCCCHHHHHHHHHHH---hcc---------C----CHH
Confidence 78999999999999999843221 12334555565667787899999876443 321 0 112
Q ss_pred HHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhh
Q 003081 247 SMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKL 326 (850)
Q Consensus 247 ~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~i 326 (850)
.++.+++. +.+++++||..+..+|+.+ .+.-|..++.|+..+.+..+++
T Consensus 160 ai~~L~~~-----L~d~~~~VR~~A~~aLg~~--------~~~~~~~~~~L~~~L~D~~~~V------------------ 208 (280)
T PRK09687 160 AIPLLINL-----LKDPNGDVRNWAAFALNSN--------KYDNPDIREAFVAMLQDKNEEI------------------ 208 (280)
T ss_pred HHHHHHHH-----hcCCCHHHHHHHHHHHhcC--------CCCCHHHHHHHHHHhcCCChHH------------------
Confidence 33444443 4567789999999999987 2234678888888887654433
Q ss_pred HHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHH
Q 003081 327 ENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFP 406 (850)
Q Consensus 327 d~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~ 406 (850)
|..++ .++.. +.. +..+|.|++.++++. .+..++..++.+ |. +..++.|.+
T Consensus 209 ---R~~A~------~aLg~----~~~---~~av~~Li~~L~~~~---~~~~a~~ALg~i----g~------~~a~p~L~~ 259 (280)
T PRK09687 209 ---RIEAI------IGLAL----RKD---KRVLSVLIKELKKGT---VGDLIIEAAGEL----GD------KTLLPVLDT 259 (280)
T ss_pred ---HHHHH------HHHHc----cCC---hhHHHHHHHHHcCCc---hHHHHHHHHHhc----CC------HhHHHHHHH
Confidence 21111 11211 111 356777777777642 355555555433 21 255666666
Q ss_pred hhhhcCcHHHHHHHHHHH
Q 003081 407 VVKEEKSAAAKRAFASAC 424 (850)
Q Consensus 407 ~l~~D~n~~Vr~~~a~al 424 (850)
.+..+.+..|+..+..++
T Consensus 260 l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 260 LLYKFDDNEIITKAIDKL 277 (280)
T ss_pred HHhhCCChhHHHHHHHHH
Confidence 663356777777666555
No 35
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.79 E-value=2.8e-08 Score=88.60 Aligned_cols=90 Identities=21% Similarity=0.257 Sum_probs=82.0
Q ss_pred hhhhhHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCC
Q 003081 90 NSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSR 169 (850)
Q Consensus 90 ~sr~gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~ 169 (850)
|.|+|+..|+++++-..+....+|+++|+|.++.++.|++++||..+|...-.+++..+..+-.||..|++.|.+.+.|+
T Consensus 1 n~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 1 NYRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred CchhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 57999999999999988888999999999999999999999999999998888886665556669999999999999999
Q ss_pred ChhHHHHHHH
Q 003081 170 LWRSREASCL 179 (850)
Q Consensus 170 ~wRVReaa~~ 179 (850)
+.+||.+|+.
T Consensus 81 d~~Vr~~a~~ 90 (97)
T PF12755_consen 81 DENVRSAAEL 90 (97)
T ss_pred chhHHHHHHH
Confidence 9999999863
No 36
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=1.1e-05 Score=92.87 Aligned_cols=389 Identities=15% Similarity=0.128 Sum_probs=224.3
Q ss_pred hHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhH
Q 003081 116 LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGK 195 (850)
Q Consensus 116 ~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~ 195 (850)
+|.+-| =...+...++||..|...++.+. . ...++|++.+++.+++..|+.-.-.=|....+..+--.+..
T Consensus 39 dL~~lL---dSnkd~~KleAmKRIia~iA~G~--d----vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLS 109 (968)
T KOG1060|consen 39 DLKQLL---DSNKDSLKLEAMKRIIALIAKGK--D----VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLS 109 (968)
T ss_pred HHHHHH---hccccHHHHHHHHHHHHHHhcCC--c----HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeee
Confidence 455544 23345678999999999998764 2 44556667779999999999887766666665544222211
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHh---hccCCCchhHHHHHHH
Q 003081 196 HLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLL---AEGILSKVDSISKASI 272 (850)
Q Consensus 196 ~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll---~~gL~s~~~evr~~a~ 272 (850)
+..+-+.+.|.++-+|..|.+++..+ | ++.|.|+++ .+...+.++-||+.|.
T Consensus 110 -----IntfQk~L~DpN~LiRasALRvlSsI-----R---------------vp~IaPI~llAIk~~~~D~s~yVRk~AA 164 (968)
T KOG1060|consen 110 -----INTFQKALKDPNQLIRASALRVLSSI-----R---------------VPMIAPIMLLAIKKAVTDPSPYVRKTAA 164 (968)
T ss_pred -----HHHHHhhhcCCcHHHHHHHHHHHHhc-----c---------------hhhHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 23345778999999999875443322 1 123344433 2456778899999999
Q ss_pred HHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcCh
Q 003081 273 GVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDT 352 (850)
Q Consensus 273 ~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~ 352 (850)
.+|.++-.- ++. +-++|+..+-.+|++..|-++......-+. +=-+.+|- +. +-+..+..++..+|+
T Consensus 165 ~AIpKLYsL-d~e---~k~qL~e~I~~LLaD~splVvgsAv~AF~e--vCPerldL-----IH--knyrklC~ll~dvde 231 (968)
T KOG1060|consen 165 HAIPKLYSL-DPE---QKDQLEEVIKKLLADRSPLVVGSAVMAFEE--VCPERLDL-----IH--KNYRKLCRLLPDVDE 231 (968)
T ss_pred HhhHHHhcC-Chh---hHHHHHHHHHHHhcCCCCcchhHHHHHHHH--hchhHHHH-----hh--HHHHHHHhhccchhh
Confidence 999888543 332 223667777777777766654322110000 00011110 00 001111111111111
Q ss_pred hhHhhHHHHHHHHHhccCCCchHhhH-------HHHHHHH--HHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHH
Q 003081 353 ESLDQLVPHLARLVRSGIGLNTRVGV-------ASFISLL--VQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASA 423 (850)
Q Consensus 353 ~~l~~lvp~L~~~lk~~~~~~tr~~a-------~~~l~~L--~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~a 423 (850)
=..--++..|.+..|.....|+.... ..-+... -.+.+....|-..-+|+..-..+ ..+|++|--+.|.+
T Consensus 232 WgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl-~S~n~sVVmA~aql 310 (968)
T KOG1060|consen 232 WGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLL-QSRNPSVVMAVAQL 310 (968)
T ss_pred hhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHH-hcCCcHHHHHHHhH
Confidence 11111233333333332222211100 0000000 00111122333446677766777 78999998777777
Q ss_pred HHHHhhhCCHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHH-HHHHHHHH
Q 003081 424 CASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYV-SDLFEELW 502 (850)
Q Consensus 424 lg~L~~~~~~~~v~~li~~l~~~~~~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v-~~~~~~v~ 502 (850)
.-++ +|...+.++++.|..++.+....+.++...+..++...+..|.+|++.|. . ...|+.. +-.=.+++
T Consensus 311 ~y~l---AP~~~~~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFf----v--~ssDp~~vk~lKleiL 381 (968)
T KOG1060|consen 311 FYHL---APKNQVTKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFF----V--RSSDPTQVKILKLEIL 381 (968)
T ss_pred HHhh---CCHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceE----e--ecCCHHHHHHHHHHHH
Confidence 6655 57777888888888888777777878888888888888999999988774 2 2234443 33334666
Q ss_pred HHhcCCChhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCC
Q 003081 503 EENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPG 571 (850)
Q Consensus 503 ~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~ 571 (850)
..++.. .-..+|++-+..++.+++..+-..+.++||.+|...+..- +..|..|++-+..
T Consensus 382 s~La~e------sni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~----~tCL~gLv~Llss 440 (968)
T KOG1060|consen 382 SNLANE------SNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVT----DTCLNGLVQLLSS 440 (968)
T ss_pred HHHhhh------ccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchh----hHHHHHHHHHHhc
Confidence 665543 2345677888888899888888888899999998876543 3444444444443
No 37
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=1.7e-06 Score=97.68 Aligned_cols=298 Identities=16% Similarity=0.201 Sum_probs=192.7
Q ss_pred HHHhhhcCCc-------hHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhchhhh-hHHHHHHhhcCCCCHhHHHH
Q 003081 64 CNLANEMGQP-------DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLR-LLIPKLVRFQYDPDKNVQDA 135 (850)
Q Consensus 64 ~~lA~~~g~p-------~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L~-~lvp~L~r~~~Dp~~~VR~a 135 (850)
..++++.+.| ..|++|+....++.....+--||-+|.+|+++..+.-+-.+. ..+|.+.+..+.|+..||+-
T Consensus 92 kllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQ 171 (514)
T KOG0166|consen 92 KLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQ 171 (514)
T ss_pred HHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHH
Confidence 3455555533 368889988865544566778999999999988665443333 68899999999999999999
Q ss_pred HHHHHHHhccCChHHHHHHH-HHHHHHHHHhhCCCCh-hHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcH
Q 003081 136 MAHIWKSLVADPKRTIDEHL-DLIFDDLLIQSGSRLW-RSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKE 213 (850)
Q Consensus 136 ~~~iw~~Lv~d~~~~i~~~~-~~Il~~Ll~~l~~~~w-RVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~ 213 (850)
+.-+.+-++.|++..-+-.+ ..+|+.|+..+..... .....+.+++.+|..|..+..-...+..+++.+++++.+..+
T Consensus 172 avWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~ 251 (514)
T KOG0166|consen 172 AVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDE 251 (514)
T ss_pred HHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCH
Confidence 99888889988864333333 3478888888876554 466778899999999984443345678899999999999989
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHH-HHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHH
Q 003081 214 TVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSM-DIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSD 292 (850)
Q Consensus 214 ~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l-~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~ 292 (850)
.|..- +||+++... | ++.+..+.++ ..+.|.|.. .|......++.-++.++|+|+.....
T Consensus 252 ~Vl~D---a~WAlsyLs----d---g~ne~iq~vi~~gvv~~LV~-lL~~~~~~v~~PaLRaiGNIvtG~d~-------- 312 (514)
T KOG0166|consen 252 EVLTD---ACWALSYLT----D---GSNEKIQMVIDAGVVPRLVD-LLGHSSPKVVTPALRAIGNIVTGSDE-------- 312 (514)
T ss_pred HHHHH---HHHHHHHHh----c---CChHHHHHHHHccchHHHHH-HHcCCCcccccHHHhhccceeeccHH--------
Confidence 88754 356654332 1 1111122222 234555542 23344455666677777776411110
Q ss_pred HHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCC
Q 003081 293 LVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGL 372 (850)
Q Consensus 293 Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~ 372 (850)
+.. ++ ++ ..++|.|..++......
T Consensus 313 --------------------------------QTq--------------~v------i~----~~~L~~l~~ll~~s~~~ 336 (514)
T KOG0166|consen 313 --------------------------------QTQ--------------VV------IN----SGALPVLSNLLSSSPKE 336 (514)
T ss_pred --------------------------------HHH--------------HH------Hh----cChHHHHHHHhccCcch
Confidence 000 00 00 12455555555533222
Q ss_pred chHhhHHHHHHHHHHHhcccccchHH-HHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHHH
Q 003081 373 NTRVGVASFISLLVQKIGMDIKPYTS-MLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQ 437 (850)
Q Consensus 373 ~tr~~a~~~l~~L~~~~~~~~~py~~-~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~ 437 (850)
..|..||-+++.++.-....++...+ .+++.++..+ ......+|++++-|++.+.....++++.
T Consensus 337 ~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l-~~~ef~~rKEAawaIsN~ts~g~~~qi~ 401 (514)
T KOG0166|consen 337 SIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLL-QTAEFDIRKEAAWAISNLTSSGTPEQIK 401 (514)
T ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHH-hccchHHHHHHHHHHHhhcccCCHHHHH
Confidence 24566777777776544444544444 5788888888 4455889999999999998877766544
No 38
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=0.0006 Score=82.68 Aligned_cols=522 Identities=14% Similarity=0.087 Sum_probs=288.1
Q ss_pred HHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHH
Q 003081 76 IYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHL 155 (850)
Q Consensus 76 v~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~ 155 (850)
+-.+|+.--|. .|. -++-.++..++.||+...|++..-+-.|-+.+.+|.-.-+.....+.++-+. ..-++++
T Consensus 355 ~~~~l~~kf~~-~~~---~ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~---AmGPe~v 427 (1176)
T KOG1248|consen 355 LHSLLDYKFHA-VWR---FILQILSALFEKCGELSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVR---AMGPERV 427 (1176)
T ss_pred HHHHHcchHHH-HHH---HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHH---hhCHHHH
Confidence 34444444444 364 4566778999999999999999888888888999887777777666666553 2345666
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhc---cCcHHHHHHHHHHHHHHHHHHHH
Q 003081 156 DLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMD---DIKETVRTAGDKLCRSVTSLTIR 232 (850)
Q Consensus 156 ~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ld---D~k~~VR~aA~~~~~~L~~~~~r 232 (850)
=.++|-=+..-... -.|.==.=-|-+-+.|.+..-+.+|+--+...+..-.+ +..-.++ --..+...+=..+..
T Consensus 428 L~~lpLnl~~~s~~--~~RsWLLPvLR~~i~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~-~~~tl~~QLW~LLP~ 504 (1176)
T KOG1248|consen 428 LTILPLNLHAESLS--FTRSWLLPVLRDYIIGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVS-LYDTLVDQLWSLLPG 504 (1176)
T ss_pred HHHcchhccccccc--cchhHhHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcHH-HHHHHHHHHHHhChh
Confidence 66666444111111 11111111122333444444444443333333322222 2222232 111222333233445
Q ss_pred hhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhc---------CcccccchHHHHHHHHHhccc
Q 003081 233 LCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGA---------GIAIRPHLSDLVSCMLESLSS 303 (850)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~---------g~~l~P~lp~Lvp~LL~~Ls~ 303 (850)
.|.- |.+....+..+-|.|.. .+ ...++.|...|..|..++... ...+..|....+|.+++.-..
T Consensus 505 FC~~----P~Dl~~sF~~la~~l~~-al-~~~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq 578 (1176)
T KOG1248|consen 505 FCNY----PVDLAESFTDLAPILGA-AL-LKRPELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQ 578 (1176)
T ss_pred hhCC----CccHHHHHHHHHHHHHH-HH-hcchHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcC
Confidence 5542 34555567777777652 23 345699999999999998864 134666777777777776654
Q ss_pred cchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHH-HHHhhcChhhHhhHHHHHHHHHhccCCCch-HhhHHHH
Q 003081 304 LEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLD-LCINVVDTESLDQLVPHLARLVRSGIGLNT-RVGVASF 381 (850)
Q Consensus 304 ~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~-~~~~~ld~~~l~~lvp~L~~~lk~~~~~~t-r~~a~~~ 381 (850)
..++.. | +-..|. +..+++. ..+...+.++...+...+.+...+. .... .-...++
T Consensus 579 ~~~~~~-~--------------~l~~~~------~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~-~~s~~~~~~~sl 636 (1176)
T KOG1248|consen 579 TVAAGR-K--------------ILASRS------TVLEIIRVDYFTVTPTDVVGSLKDSAGELASDL-DESVASFKTLSL 636 (1176)
T ss_pred CCcccc-c--------------cHHHHH------HHHHHHHHHHhhcccHHHHHHHHHHHHhHhccc-hhhhhhHHHHHH
Confidence 322211 1 111111 0111111 1111112222222222222222211 0000 0122333
Q ss_pred HHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCC-HHHHHHHHHHHHHhhc-----CCchhhH
Q 003081 382 ISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYAT-PSQAQKLIEETAALHI-----DDKNSQI 455 (850)
Q Consensus 382 l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~-~~~v~~li~~l~~~~~-----~d~~~r~ 455 (850)
|-.++.-.+..=..+..++. .+.....+..+..|++....-++.++..-+ ...+...+..+.+.+. .....+.
T Consensus 637 Ldl~~~~a~~~~e~~vs~l~-~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~ 715 (1176)
T KOG1248|consen 637 LDLLIALAPVQTESQVSKLF-TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQA 715 (1176)
T ss_pred HHHHHhhhccccchhHHHHH-HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 32222111111111222333 445554233367788887788888877622 1123344444444332 1223345
Q ss_pred HHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhc--C-CCh---hhHHhhHHHHHHHHHHhhc
Q 003081 456 SCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENT--S-GDR---VTLQLYLGEIVSLICEGIA 529 (850)
Q Consensus 456 ~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~--~-~~~---~~i~~yl~eIl~ll~~~L~ 529 (850)
....++..|.+.++..+..+..+.+|-+...+.+.+...|....+++..+. . ... .-...-+++.+..+...+.
T Consensus 716 ~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~ 795 (1176)
T KOG1248|consen 716 SRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLV 795 (1176)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhc
Confidence 556667777777775555666677776666666666777776666665554 1 110 0012345666666666655
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCcchhh-hHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHH
Q 003081 530 SSSWSSKRKSAKAICKLGEILGESLSN-YHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVD 608 (850)
Q Consensus 530 d~s~~vr~~aa~alg~la~~~g~~l~~-~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~ 608 (850)
..+--++.+...+++.+....++.+.. +++.++..+.--|.++..+.+...+..+..++.+..+.+ -.++.++|++
T Consensus 796 gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~---l~~~~~~LL~ 872 (1176)
T KOG1248|consen 796 GDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEEC---LSPHLEELLP 872 (1176)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHH---HhhhHHHHHH
Confidence 544444444467788888776665553 688899988888988888888888888888887766544 3468899999
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHcCCc
Q 003081 609 MVSSACRKKIKKYREAAFSCLEQVIKAFRDP 639 (850)
Q Consensus 609 ~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~~~ 639 (850)
.+.+-..+....+|...--.|-.+++.|+-.
T Consensus 873 sll~ls~d~k~~~r~Kvr~LlekLirkfg~~ 903 (1176)
T KOG1248|consen 873 SLLALSHDHKIKVRKKVRLLLEKLIRKFGAE 903 (1176)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHhCHH
Confidence 9999888888899999999999999999754
No 39
>PRK09687 putative lyase; Provisional
Probab=98.69 E-value=1.1e-06 Score=94.58 Aligned_cols=193 Identities=10% Similarity=0.007 Sum_probs=140.5
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhc-CCchhhHHHHHHHHHHHhhchhhhhhhHhh
Q 003081 400 LLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYHAV 478 (850)
Q Consensus 400 lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~-~d~~~r~~~~~~l~al~~~~~~~f~~~~~~ 478 (850)
-+..|+..| .|.+..||..++.+++.+- ++.+ ++.+..+.. +|+..|..++.+++.+...-. ....
T Consensus 24 ~~~~L~~~L-~d~d~~vR~~A~~aL~~~~----~~~~---~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-----~~~~ 90 (280)
T PRK09687 24 NDDELFRLL-DDHNSLKRISSIRVLQLRG----GQDV---FRLAIELCSSKNPIERDIGADILSQLGMAKR-----CQDN 90 (280)
T ss_pred cHHHHHHHH-hCCCHHHHHHHHHHHHhcC----cchH---HHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-----chHH
Confidence 355666777 7899999999999987653 2222 223333332 466789888888888743110 0234
Q ss_pred HhHHHHH-HhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhh
Q 003081 479 IVPVIFI-SRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNY 557 (850)
Q Consensus 479 vlP~l~~-~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~ 557 (850)
.+|.+.. ..+|+++.||......++.+.... ..+.+..++.+...+.|++|.||..++.+||.+..
T Consensus 91 a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~----~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--------- 157 (280)
T PRK09687 91 VFNILNNLALEDKSACVRASAINATGHRCKKN----PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND--------- 157 (280)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhcccccc----cccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC---------
Confidence 5666543 367888999999888887765432 12355677777788899999999999999974421
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 003081 558 HHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQ 631 (850)
Q Consensus 558 l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~ 631 (850)
+..++.|+..+.+.+|+.|.....+|+.+.. ..+.+.+.|+..+.+.+..+|..|+..||.
T Consensus 158 -~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~------------~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 158 -EAAIPLLINLLKDPNGDVRNWAAFALNSNKY------------DNPDIREAFVAMLQDKNEEIRIEAIIGLAL 218 (280)
T ss_pred -HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCC------------CCHHHHHHHHHHhcCCChHHHHHHHHHHHc
Confidence 4578889999999899999999999987721 125677788888899999999999999998
No 40
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.60 E-value=0.00029 Score=82.41 Aligned_cols=393 Identities=14% Similarity=0.124 Sum_probs=207.6
Q ss_pred hhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHH-HHHHHHHHHhhCCCChhHHH
Q 003081 97 FGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHL-DLIFDDLLIQSGSRLWRSRE 175 (850)
Q Consensus 97 ~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~-~~Il~~Ll~~l~~~~wRVRe 175 (850)
..|..+++.. .....++++.|.|.+...+|+|.||+-++.....++.+......... ..+++.++..+.+++-.|.+
T Consensus 60 ~iL~~~l~~~--~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~ 137 (503)
T PF10508_consen 60 DILKRLLSAL--SPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAK 137 (503)
T ss_pred HHHHHHHhcc--CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHH
Confidence 3455555533 22223677889999999999999999999988887766543233222 56899999999999999999
Q ss_pred HHHHHHHHHHccCCchhhhHHH-HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHH--HhH
Q 003081 176 ASCLSLADIIQGRKFDQVGKHL-RRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMD--IVL 252 (850)
Q Consensus 176 aa~~Al~~Ll~~~~~~~l~~~L-~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~--~lL 252 (850)
.|+.+|..+..... .+...+ +.+.+.+..++...++.||-.+..++-.+++... ....++. .++
T Consensus 138 ~A~~~L~~l~~~~~--~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~-----------~~~~~~~~sgll 204 (503)
T PF10508_consen 138 AAIKALKKLASHPE--GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSP-----------EAAEAVVNSGLL 204 (503)
T ss_pred HHHHHHHHHhCCch--hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCH-----------HHHHHHHhccHH
Confidence 99999999986432 111110 1115666667766677888777665555543211 1112222 367
Q ss_pred HHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchH--HHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHH
Q 003081 253 PFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLS--DLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLR 330 (850)
Q Consensus 253 P~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp--~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r 330 (850)
+.++. .+.+++--+|..+++++.++++.... ..|+. .+++.|...+.+.+
T Consensus 205 ~~ll~-eL~~dDiLvqlnalell~~La~~~~g--~~yL~~~gi~~~L~~~l~~~~------------------------- 256 (503)
T PF10508_consen 205 DLLLK-ELDSDDILVQLNALELLSELAETPHG--LQYLEQQGIFDKLSNLLQDSE------------------------- 256 (503)
T ss_pred HHHHH-HhcCccHHHHHHHHHHHHHHHcChhH--HHHHHhCCHHHHHHHHHhccc-------------------------
Confidence 77773 46666677899999999999862111 11111 11222222221100
Q ss_pred HhhccCCcHHHHHHHHHhhcChhhHh-hHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhh
Q 003081 331 ISIAKGSPMWDTLDLCINVVDTESLD-QLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVK 409 (850)
Q Consensus 331 ~~~~~~s~l~eal~~~~~~ld~~~l~-~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~ 409 (850)
.+| .+. -++| |...+.+.++...+..+..-.+.++..++..+
T Consensus 257 -----~dp---------------~~~~~~l~----------------g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~- 299 (503)
T PF10508_consen 257 -----EDP---------------RLSSLLLP----------------GRMKFFGNLARVSPQEVLELYPAFLERLFSML- 299 (503)
T ss_pred -----cCC---------------cccchhhh----------------hHHHHHHHHHhcChHHHHHHHHHHHHHHHHHh-
Confidence 000 000 0112 22234444444333333333456777888777
Q ss_pred hcCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcC
Q 003081 410 EEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFE 489 (850)
Q Consensus 410 ~D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d 489 (850)
+..+++.+..+..++|.+.... +...-+.. ...+..+ .+...++...+..+...+-..-+-+..++....+
T Consensus 300 ~s~d~~~~~~A~dtlg~igst~--~G~~~L~~------~~~~~~~-~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~ 370 (503)
T PF10508_consen 300 ESQDPTIREVAFDTLGQIGSTV--EGKQLLLQ------KQGPAMK-HVLKAIGDAIKSGSTELKLRALHALASILTSGTD 370 (503)
T ss_pred CCCChhHHHHHHHHHHHHhCCH--HHHHHHHh------hcchHHH-HHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCC
Confidence 6778889999999999887432 21111100 0000001 1111111111111111111111112222211111
Q ss_pred -CchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh-CcchhhhHHHHHHHHHH
Q 003081 490 -DDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEIL-GESLSNYHHVLLESIMK 567 (850)
Q Consensus 490 -~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~-g~~l~~~l~~llp~L~~ 567 (850)
.++++..+ .+.|=+..++.+.. .++...++.|-.++|-++...+..++..- |-..--.-+.++..|.+
T Consensus 371 ~~~~~i~~~-~~~w~~~~~~~~~~---------~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lld 440 (503)
T PF10508_consen 371 RQDNDILSI-TESWYESLSGSPLS---------NLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLD 440 (503)
T ss_pred CchHHHHHH-HHHHHHHhcCCchH---------HHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcC
Confidence 22333332 24443333332111 15666778888999999999999998642 21111123556666666
Q ss_pred hcCCCChhhHHHHHHHHHHHH
Q 003081 568 EVPGRLWEGKDALLYAIGSIS 588 (850)
Q Consensus 568 ~L~~r~~~gKe~vL~aL~~l~ 588 (850)
.-.+.+.++|+.=..-...++
T Consensus 441 r~~E~~K~~ke~K~~ii~~l~ 461 (503)
T PF10508_consen 441 RSTETTKEGKEAKYDIIKALA 461 (503)
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 665555666665555444444
No 41
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.57 E-value=0.00027 Score=80.81 Aligned_cols=386 Identities=14% Similarity=0.167 Sum_probs=219.6
Q ss_pred HHHHHhhcCCCCHh---HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCC-----CChhHHHHHHHHHHHHHccCC
Q 003081 118 IPKLVRFQYDPDKN---VQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGS-----RLWRSREASCLSLADIIQGRK 189 (850)
Q Consensus 118 vp~L~r~~~Dp~~~---VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~-----~~wRVReaa~~Al~~Ll~~~~ 189 (850)
+|.|+.-..|..+. -.+....+...+...+ ..|+.+++.+++.+.. .+-..-.+.+..+..+++...
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~-----~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~ 75 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALSTSP-----QILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQ 75 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHCCh-----hHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcc
Confidence 36666666666553 2333444555555432 2345555555544421 245666778888888877432
Q ss_pred ----chhhhHHHHH-HHHHHHHHhcc---CcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhh----
Q 003081 190 ----FDQVGKHLRR-IWTAAFRAMDD---IKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLA---- 257 (850)
Q Consensus 190 ----~~~l~~~L~~-i~~~l~~~ldD---~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~---- 257 (850)
.....-|+.+ +++.+++..-. .....-.....++..+.+..+|.+++. ..+++++.+...++.
T Consensus 76 ~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~-----~q~~~~~~~~~lf~~~~~~ 150 (415)
T PF12460_consen 76 EDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPE-----KQQEILDELYSLFLSPKSF 150 (415)
T ss_pred cccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHHHHHcccccc
Confidence 2345566665 77777776521 111111122233344444556666543 244567776666551
Q ss_pred ccCCCch---hHHHHHHHHHHHHHHHhcCcccc-cchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhh
Q 003081 258 EGILSKV---DSISKASIGVVMKLVKGAGIAIR-PHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISI 333 (850)
Q Consensus 258 ~gL~s~~---~evr~~a~~~L~~la~~~g~~l~-P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~ 333 (850)
..+.... .+.....+..+..+.....+... |...+++..++......+. +..|...
T Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~--------------------~~~~~~~ 210 (415)
T PF12460_consen 151 SPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSED--------------------EFSRLAA 210 (415)
T ss_pred CCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCC--------------------hHHHHHH
Confidence 1111111 12233444445555555444433 6777788777777653321 1112111
Q ss_pred ccCCcHHHHHHHHH-hhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcC
Q 003081 334 AKGSPMWDTLDLCI-NVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEK 412 (850)
Q Consensus 334 ~~~s~l~eal~~~~-~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~ 412 (850)
. ..+..++ ++.+.+.++.++..+...+.+......+..+..++.++..-.-..-.|....++..++..+ +|
T Consensus 211 ~------~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL-~~- 282 (415)
T PF12460_consen 211 L------QLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELL-SS- 282 (415)
T ss_pred H------HHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHh-CC-
Confidence 1 1122222 3334444555665555555222233456667777766554433334577888888888888 44
Q ss_pred cHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhchhhh-hhhHhhHhHHHHHHhcCCc
Q 003081 413 SAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVL-SGYHAVIVPVIFISRFEDD 491 (850)
Q Consensus 413 n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~~d~~~r~~~~~~l~al~~~~~~~f-~~~~~~vlP~l~~~~~d~~ 491 (850)
+.+...+|.+++.++.-. ++... + . . ++..+. .+ +.++..++|.+..+-...+
T Consensus 283 -~~~g~~aA~~f~il~~d~-~~~l~----------------~-~-~---~a~vkl---LykQR~F~~~~p~L~~~~~~~~ 336 (415)
T PF12460_consen 283 -PELGQQAAKAFGILLSDS-DDVLN----------------K-E-N---HANVKL---LYKQRFFTQVLPKLLEGFKEAD 336 (415)
T ss_pred -hhhHHHHHHHHhhHhcCc-HHhcC----------------c-c-c---cchhhh---HHhHHHHHHHHHHHHHHHhhcC
Confidence 778888999998886321 11100 0 0 0 111110 11 3566778888766544444
Q ss_pred hHHHHHHHHHHHHhcCCChh-hHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHH
Q 003081 492 KYVSDLFEELWEENTSGDRV-TLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMK 567 (850)
Q Consensus 492 ~~v~~~~~~v~~~l~~~~~~-~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~ 567 (850)
...+..+...+..+....+. .+.++++++++++.+.|+.++.+++.++..++..+....++.+.+|++.++|.|.+
T Consensus 337 ~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 337 DEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred hhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 44777776667666665544 45799999999999999999999999999999999988888899999999999875
No 42
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=0.00011 Score=83.10 Aligned_cols=319 Identities=11% Similarity=0.031 Sum_probs=192.4
Q ss_pred HHHHhHHHHhhccCC-CchhHHHHHHHHHHHHHHHhcCcccccch-HHHHHHHHHhccccchhhhhHHHHhhhhcccchh
Q 003081 247 SMDIVLPFLLAEGIL-SKVDSISKASIGVVMKLVKGAGIAIRPHL-SDLVSCMLESLSSLEDQGLNYIELHAANAGIQTE 324 (850)
Q Consensus 247 ~l~~lLP~Ll~~gL~-s~~~evr~~a~~~L~~la~~~g~~l~P~l-p~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d 324 (850)
+..-++|-+.+ .+. +..+.++-.|.++|.+||......-+-++ ...+|.|+.++.+.++.+..-.-|..++.
T Consensus 106 i~~G~v~~lV~-~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNI----- 179 (514)
T KOG0166|consen 106 IQSGVVPRLVE-FLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNI----- 179 (514)
T ss_pred HHcCcHHHHHH-HHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhcc-----
Confidence 44567777764 443 45689999999999999986432211111 24588899999887766644333333321
Q ss_pred hhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHh-cccccchHHHHHHH
Q 003081 325 KLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKI-GMDIKPYTSMLLRL 403 (850)
Q Consensus 325 ~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~-~~~~~py~~~lL~~ 403 (850)
+..||. +.+.+- + ...++.|+..+...........+.-++..||... +..=-.....++++
T Consensus 180 ---------agds~~---~Rd~vl--~----~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~ 241 (514)
T KOG0166|consen 180 ---------AGDSPD---CRDYVL--S----CGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPA 241 (514)
T ss_pred ---------ccCChH---HHHHHH--h----hcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence 222221 111110 1 1245555556654433334445666676666543 11111235578999
Q ss_pred HHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHH--H--HHHHHHHHHhhcC-CchhhHHHHHHHHHHHhhchhhhhh-hHh
Q 003081 404 LFPVVKEEKSAAAKRAFASACASVLKYATPSQ--A--QKLIEETAALHID-DKNSQISCAILLKSYSSVASDVLSG-YHA 477 (850)
Q Consensus 404 Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~--v--~~li~~l~~~~~~-d~~~r~~~~~~l~al~~~~~~~f~~-~~~ 477 (850)
+...+ .+.++.|...++-|+.||..+.++.. + ...++++.+++.. +...+.-+..+++.|.......-.. .-.
T Consensus 242 L~~ll-~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~ 320 (514)
T KOG0166|consen 242 LLRLL-HSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINS 320 (514)
T ss_pred HHHHH-hcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhc
Confidence 99999 67889999999999999998766542 1 2457778777753 3344544555555543322211111 113
Q ss_pred hHhHHHHHHhc-CCchHHHHHHHHHHHHhcCCChhhHHhhH-HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchh
Q 003081 478 VIVPVIFISRF-EDDKYVSDLFEELWEENTSGDRVTLQLYL-GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLS 555 (850)
Q Consensus 478 ~vlP~l~~~~~-d~~~~v~~~~~~v~~~l~~~~~~~i~~yl-~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~ 555 (850)
..+|.+...+. .+.+.++..+..+.+.++.|...+++..+ ..+++.+...+.+.+.++|+-|+.+|+.++......--
T Consensus 321 ~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi 400 (514)
T KOG0166|consen 321 GALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQI 400 (514)
T ss_pred ChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHH
Confidence 35565543333 34555777777777888888777776554 45889999999999999999999999998875443322
Q ss_pred hhH--HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHh
Q 003081 556 NYH--HVLLESIMKEVPGRLWEGKDALLYAIGSISTS 590 (850)
Q Consensus 556 ~~l--~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~ 590 (850)
.|+ ..+++.+..-|.-.+...=..+|.++..+...
T Consensus 401 ~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 401 KYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKV 437 (514)
T ss_pred HHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHH
Confidence 332 23556666666433334456667777666543
No 43
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.49 E-value=2.6e-06 Score=89.10 Aligned_cols=182 Identities=13% Similarity=0.072 Sum_probs=126.4
Q ss_pred CchhhHHHHHHHHHHHhhc-----hhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHH
Q 003081 450 DKNSQISCAILLKSYSSVA-----SDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLI 524 (850)
Q Consensus 450 d~~~r~~~~~~l~al~~~~-----~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll 524 (850)
|.+.|..+..-+..+.+.. .+.|..++..+++.+.....+....|...+..++..+....+..+.+|.+.+++.+
T Consensus 20 ~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~L 99 (228)
T PF12348_consen 20 DWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPL 99 (228)
T ss_dssp SHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 4556777777777776655 23333444445555544444433446666677888888777778999999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHH-HHHHHHhcCCCChhhHHHHHHHHHHHHHhcc---cccccCCC
Q 003081 525 CEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVL-LESIMKEVPGRLWEGKDALLYAIGSISTSCH---KDISAEDP 600 (850)
Q Consensus 525 ~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~l-lp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~---~~l~~~~~ 600 (850)
...+.++.--++..|..++..++...+ +.+.+ .+.+..++..+.|..|..+++.+..++...+ ..+. ..
T Consensus 100 l~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~--~~ 172 (228)
T PF12348_consen 100 LKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ--KS 172 (228)
T ss_dssp HHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG----H
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc--cc
Confidence 999999999999999999999998765 22345 7888889999999999999999999988776 2221 12
Q ss_pred CchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCC
Q 003081 601 TTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRD 638 (850)
Q Consensus 601 ~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~~ 638 (850)
...+.+.+.+.+.+.+.++.+|..|-.+++.+.+.+|.
T Consensus 173 ~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 23578999999999999999999999999999999875
No 44
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.47 E-value=0.00014 Score=85.18 Aligned_cols=292 Identities=13% Similarity=0.118 Sum_probs=193.5
Q ss_pred HHHHHHHhhcChhh-HhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchH-HHHHHHHHHhhhhcCcHHHHH
Q 003081 341 DTLDLCINVVDTES-LDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYT-SMLLRLLFPVVKEEKSAAAKR 418 (850)
Q Consensus 341 eal~~~~~~ld~~~-l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~-~~lL~~Ll~~l~~D~n~~Vr~ 418 (850)
+.++.|+...+... .+.+.|.|...++.+ ....|.-++..+..++.+......... ..++..++.++ .|++..|.+
T Consensus 60 ~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~-~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L-~~~d~~Va~ 137 (503)
T PF10508_consen 60 DILKRLLSALSPDSLLPQYQPFLQRGLTHP-SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL-RDPDLSVAK 137 (503)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH-cCCcHHHHH
Confidence 35666666554443 577888888888875 456777777777666543322222122 35788888998 789999999
Q ss_pred HHHHHHHHHhhhCCHHHHHHH-----HHHHHHhhcC-CchhhHHHHHHHHHHHhhchhhhhhhH-hhHhHHHHHHhcCCc
Q 003081 419 AFASACASVLKYATPSQAQKL-----IEETAALHID-DKNSQISCAILLKSYSSVASDVLSGYH-AVIVPVIFISRFEDD 491 (850)
Q Consensus 419 ~~a~alg~L~~~~~~~~v~~l-----i~~l~~~~~~-d~~~r~~~~~~l~al~~~~~~~f~~~~-~~vlP~l~~~~~d~~ 491 (850)
.++.++..+.+... ....+ ...+...... ++..|.-+..++..+++.+++.+..+. .-+++.++....++|
T Consensus 138 ~A~~~L~~l~~~~~--~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dD 215 (503)
T PF10508_consen 138 AAIKALKKLASHPE--GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDD 215 (503)
T ss_pred HHHHHHHHHhCCch--hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCcc
Confidence 99999998886432 22233 5555555543 566777788888899998888886544 237777766666656
Q ss_pred hHHHHHHHHHHHHhcCCChhhHHhhH--HHHHHHHHHhh----cCC-CHHHHHHHH-HHHHHHHHHhCcchhhhHHHHHH
Q 003081 492 KYVSDLFEELWEENTSGDRVTLQLYL--GEIVSLICEGI----ASS-SWSSKRKSA-KAICKLGEILGESLSNYHHVLLE 563 (850)
Q Consensus 492 ~~v~~~~~~v~~~l~~~~~~~i~~yl--~eIl~ll~~~L----~d~-s~~vr~~aa-~alg~la~~~g~~l~~~l~~llp 563 (850)
.-++-.+.+++.+++....+ ..|+ ..+++.+...+ .|+ ...+.-.+. +.+|.++...+..+...+|.++.
T Consensus 216 iLvqlnalell~~La~~~~g--~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~ 293 (503)
T PF10508_consen 216 ILVQLNALELLSELAETPHG--LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLE 293 (503)
T ss_pred HHHHHHHHHHHHHHHcChhH--HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 66788888998888774322 2333 22444444444 444 223332222 56677776544455556788888
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHHHhccc--ccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCC
Q 003081 564 SIMKEVPGRLWEGKDALLYAIGSISTSCHK--DISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRD 638 (850)
Q Consensus 564 ~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~--~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~~ 638 (850)
.+.+.+...+...+..+++++|.++..... .+.....+-+..+++.+...++....++|..++.||+.++...+.
T Consensus 294 ~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~ 370 (503)
T PF10508_consen 294 RLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTD 370 (503)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCC
Confidence 888777777788999999999999854432 121223445566677777777777789999999999999876543
No 45
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.47 E-value=3.7e-06 Score=87.97 Aligned_cols=190 Identities=13% Similarity=0.108 Sum_probs=126.1
Q ss_pred hccchhhhhhhhHHhhHHHHHHHh-----hhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHH
Q 003081 83 ANYQVSLNSKRGAAFGFSKIAKQA-----GDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDL 157 (850)
Q Consensus 83 a~~~~~w~sr~gAa~gl~~I~~~~-----~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~ 157 (850)
.+++.+|..|..|.--+..++.+. .+.+-+.+.++++.+.....|.+..|.+.++.++..++...+..++.|++.
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~ 94 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADI 94 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 345557999999999998887766 233445667777888899999999999999999999997666678889999
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHH-HHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhc
Q 003081 158 IFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRI-WTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDV 236 (850)
Q Consensus 158 Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i-~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~ 236 (850)
++|.|+..++++.--+|+++..++..+++..+ +.+.+ ...+...+.+..+.||..+...+..+.. ....
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~----~~~~ 164 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCS------YSPKILLEILSQGLKSKNPQVREECAEWLAIILE----KWGS 164 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHT----T---
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCC------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH----Hccc
Confidence 99999999999888899999999999998765 22244 5555667889999999987654443321 1110
Q ss_pred ccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCc
Q 003081 237 TLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGI 284 (850)
Q Consensus 237 ~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~ 284 (850)
. ...-.....++.++|.+. +++.|.+++||..+-.++..+.+..|.
T Consensus 165 ~-~~~l~~~~~~~~l~~~l~-~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 165 D-SSVLQKSAFLKQLVKALV-KLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp ---GGG--HHHHHHHHHHHH-HHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred h-HhhhcccchHHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 0 000111224577888776 678899999999999999998776654
No 46
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.012 Score=70.42 Aligned_cols=346 Identities=16% Similarity=0.165 Sum_probs=185.6
Q ss_pred HHhHHHHhHHHHhh--c---c--CCCchhHHHHHHHHHHHHHHHhcCcccccchHHH----HHHHHHhccccchhhhhHH
Q 003081 244 ARQSMDIVLPFLLA--E---G--ILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDL----VSCMLESLSSLEDQGLNYI 312 (850)
Q Consensus 244 ~~~~l~~lLP~Ll~--~---g--L~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~L----vp~LL~~Ls~~ep~~~nyl 312 (850)
+++.++.+++|+.+ . + ....++.-+..|+.+++.+++...+. .||-.++ +++++..+++. |-
T Consensus 404 ~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~-s~~~~~mE~flv~hVfP~f~s~------~g 476 (1010)
T KOG1991|consen 404 GKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKK-SPYKSQMEYFLVNHVFPEFQSP------YG 476 (1010)
T ss_pred chhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccC-CchHHHHHHHHHHHhhHhhcCc------hh
Confidence 45678888888775 1 1 22245677788999999999765432 3444332 22333333221 11
Q ss_pred HHhhhhcccchhhhHHHHHhhccCCcHHHHHHHH--HhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhc
Q 003081 313 ELHAANAGIQTEKLENLRISIAKGSPMWDTLDLC--INVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIG 390 (850)
Q Consensus 313 ~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~--~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~ 390 (850)
.+|..+ -+.+..+ ++.-|..++.+.+-...+.++++..+|+|+.|+-.+..++.+..
T Consensus 477 ---------------~Lrara------c~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~ 535 (1010)
T KOG1991|consen 477 ---------------YLRARA------CWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQE 535 (1010)
T ss_pred ---------------HHHHHH------HHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcch
Confidence 111111 0122221 23345556666777677777756689999999988888887766
Q ss_pred ---ccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHH-------HHHHHHHHHHHhhc-------CCchh
Q 003081 391 ---MDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPS-------QAQKLIEETAALHI-------DDKNS 453 (850)
Q Consensus 391 ---~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~-------~v~~li~~l~~~~~-------~d~~~ 453 (850)
..++||.+.+|+.+++....-.|+.+.. .+-.++...+++ ..+++......... ++++.
T Consensus 536 ~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~----vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk 611 (1010)
T KOG1991|consen 536 QADEKVSAHVPPIMQELLKLSNEVENDDLTN----VMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDK 611 (1010)
T ss_pred hhhhhHhhhhhHHHHHHHHHHHhcchhHHHH----HHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHH
Confidence 3489999999999999884223333321 122222222221 12222222111111 12222
Q ss_pred hHHHHHHHHHHH------hhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCC--hhhHHhhHHHHHHHHH
Q 003081 454 QISCAILLKSYS------SVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGD--RVTLQLYLGEIVSLIC 525 (850)
Q Consensus 454 r~~~~~~l~al~------~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~--~~~i~~yl~eIl~ll~ 525 (850)
..+|.-++.++. ...++.++...+.++|++-.... .++.+.+.++.+-..+.+ ...|.|-+=.+++++.
T Consensus 612 ~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~---~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~ll~li~ 688 (1010)
T KOG1991|consen 612 AIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILK---NDITDFYEELLEIVSSLTFLSKEISPIMWGLLELIL 688 (1010)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHH
Confidence 344444444443 33477888888888888743221 123344444442211111 1123344444555666
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHhCcchhh---hHHHHHHHHHHhcCCCC--hhhHHHHHHHHHHHHHhcccccccCCC
Q 003081 526 EGIASSSWSSKRKSAKAICKLGEILGESLSN---YHHVLLESIMKEVPGRL--WEGKDALLYAIGSISTSCHKDISAEDP 600 (850)
Q Consensus 526 ~~L~d~s~~vr~~aa~alg~la~~~g~~l~~---~l~~llp~L~~~L~~r~--~~gKe~vL~aL~~l~~~~~~~l~~~~~ 600 (850)
+.+.+..-+--....-++...+...++.+.. |+..++.++.+.+.++. -+-.+.+.+-+..++.+|++.+.
T Consensus 689 e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~d---- 764 (1010)
T KOG1991|consen 689 EVFQDDGIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLD---- 764 (1010)
T ss_pred HHHhhhhHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHh----
Confidence 6655544333344444555455443333332 56778888888886643 23356677778888888886443
Q ss_pred CchHHHHHHHHHHHhh--cCHHHHHHHHHH
Q 003081 601 TTPFAIVDMVSSACRK--KIKKYREAAFSC 628 (850)
Q Consensus 601 ~~~~~i~~~l~~e~~r--~~~~~R~~Al~~ 628 (850)
.+++..+...+....+ ++..+|.-++..
T Consensus 765 q~iplf~~~a~~~l~~~~e~s~~~~~~leV 794 (1010)
T KOG1991|consen 765 QYIPLFLELALSRLTREVETSELRVMLLEV 794 (1010)
T ss_pred hHhHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 2455555555544444 667778777765
No 47
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.41 E-value=0.00085 Score=76.75 Aligned_cols=337 Identities=12% Similarity=0.101 Sum_probs=192.4
Q ss_pred hHHHHhHHHHhhc--c-CC-CchhHHHHHHHHHHHHHHHhcCcc-----cccchHH-HHHHHHHhccccchhhhhHHHHh
Q 003081 246 QSMDIVLPFLLAE--G-IL-SKVDSISKASIGVVMKLVKGAGIA-----IRPHLSD-LVSCMLESLSSLEDQGLNYIELH 315 (850)
Q Consensus 246 ~~l~~lLP~Ll~~--g-L~-s~~~evr~~a~~~L~~la~~~g~~-----l~P~lp~-Lvp~LL~~Ls~~ep~~~nyl~~~ 315 (850)
.++..++|.|+++ . .. ....+.-...+.++..+....... ..-|... ++|.+++..-...+..-+
T Consensus 34 ~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~----- 108 (415)
T PF12460_consen 34 QILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSD----- 108 (415)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccc-----
Confidence 4677777777752 0 11 113445556778888887765332 3444444 778877766432211100
Q ss_pred hhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhc----------cCCCc-hHhhHHHHHHH
Q 003081 316 AANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRS----------GIGLN-TRVGVASFISL 384 (850)
Q Consensus 316 a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~----------~~~~~-tr~~a~~~l~~ 384 (850)
.+...++. +...+...++.++.+.-++++..+....-. ..... ......-++..
T Consensus 109 -----~~~~~L~~----------~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 173 (415)
T PF12460_consen 109 -----LDDRVLEL----------LSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSA 173 (415)
T ss_pred -----cchHHHHH----------HHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHH
Confidence 00011111 223455567777777666666655554430 00000 11112222222
Q ss_pred HHHHhccccc-chHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCC-HHHHHHHHHHHHHhh--cCCchhhHHHHHH
Q 003081 385 LVQKIGMDIK-PYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYAT-PSQAQKLIEETAALH--IDDKNSQISCAIL 460 (850)
Q Consensus 385 L~~~~~~~~~-py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~-~~~v~~li~~l~~~~--~~d~~~r~~~~~~ 460 (850)
+......+.. |....+++.++.......++.+|..++..++.++-..+ ++.+.++++.+.... ..+...|..+..+
T Consensus 174 il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 253 (415)
T PF12460_consen 174 ILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEI 253 (415)
T ss_pred HHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHH
Confidence 3333333333 57777888888777555668899999999998886643 445667776666555 2334445444445
Q ss_pred HHHHHhhc----hhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCC--------ChhhHH-----hhHHHHHHH
Q 003081 461 LKSYSSVA----SDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSG--------DRVTLQ-----LYLGEIVSL 523 (850)
Q Consensus 461 l~al~~~~----~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~--------~~~~i~-----~yl~eIl~l 523 (850)
+.-+.|.. .+....+...++-. ..+ +.+.....+.++-+... ....++ .+...+++.
T Consensus 254 ~~Wi~KaLv~R~~~~~~~~~~~L~~l----L~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~ 327 (415)
T PF12460_consen 254 LIWITKALVMRGHPLATELLDKLLEL----LSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPK 327 (415)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHH----hCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHH
Confidence 44444322 12222333333322 222 33333333333322221 112232 445667777
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHhCcc-hhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCc
Q 003081 524 ICEGIASSSWSSKRKSAKAICKLGEILGES-LSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTT 602 (850)
Q Consensus 524 l~~~L~d~s~~vr~~aa~alg~la~~~g~~-l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~ 602 (850)
+.+.....+...|..-..++.-+....+.. +.++++.++|.|+++|.-.+.+.+...|++|..+.....+.+. ++
T Consensus 328 L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~----~h 403 (415)
T PF12460_consen 328 LLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELIS----EH 403 (415)
T ss_pred HHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHH----HH
Confidence 777777777678999999999999988864 5678999999999999877788999999999998876544332 46
Q ss_pred hHHHHHHHHH
Q 003081 603 PFAIVDMVSS 612 (850)
Q Consensus 603 ~~~i~~~l~~ 612 (850)
++.++|.+++
T Consensus 404 l~sLI~~LL~ 413 (415)
T PF12460_consen 404 LSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHHh
Confidence 7777777654
No 48
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.39 E-value=1.4e-05 Score=95.71 Aligned_cols=287 Identities=15% Similarity=0.132 Sum_probs=172.1
Q ss_pred HHHHHhhcChh-hHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhc----ccccchHHHHHHHHHHhhhhc-CcHHH
Q 003081 343 LDLCINVVDTE-SLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIG----MDIKPYTSMLLRLLFPVVKEE-KSAAA 416 (850)
Q Consensus 343 l~~~~~~ld~~-~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~----~~~~py~~~lL~~Ll~~l~~D-~n~~V 416 (850)
+..|..+++++ .++.++|+++.++.++ ...+|+.|...+..+..... .+-.-|-+-|++.|-..+ .| .+..|
T Consensus 447 l~~lS~~i~de~~LDRVlPY~v~l~~Ds-~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~-~d~~~~~v 524 (1431)
T KOG1240|consen 447 LQELSTYIDDEVKLDRVLPYFVHLLMDS-EADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLL-NDSSAQIV 524 (1431)
T ss_pred HHHHhhhcchHHHHhhhHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhh-ccCcccee
Confidence 34566777665 5799999999999886 45667777777766543221 111224445566665555 56 66779
Q ss_pred HHHHHHHHHHHhhhCCHHHHHHHHHHHHH-----hhcCCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCc
Q 003081 417 KRAFASACASVLKYATPSQAQKLIEETAA-----LHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDD 491 (850)
Q Consensus 417 r~~~a~alg~L~~~~~~~~v~~li~~l~~-----~~~~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~ 491 (850)
|-+||.+++.+.+.+ .++.+.... ++. |++.. ... -.............+-..+.....|++
T Consensus 525 RiayAsnla~LA~tA-----~rFle~~q~~~~~g~~n-~~nse-t~~------~~~~~~~~~~L~~~V~~~v~sLlsd~~ 591 (1431)
T KOG1240|consen 525 RIAYASNLAQLAKTA-----YRFLELTQELRQAGMLN-DPNSE-TAP------EQNYNTELQALHHTVEQMVSSLLSDSP 591 (1431)
T ss_pred hhhHHhhHHHHHHHH-----HHHHHHHHHHHhccccc-Ccccc-ccc------ccccchHHHHHHHHHHHHHHHHHcCCc
Confidence 999999999987543 233333222 222 11110 000 000000011111111111112234555
Q ss_pred hHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcc-hhhhHHHHHHHHHHhcC
Q 003081 492 KYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGES-LSNYHHVLLESIMKEVP 570 (850)
Q Consensus 492 ~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~-l~~~l~~llp~L~~~L~ 570 (850)
+.||....+-...+|--.+. ..--+-|+..+...|+|.+|.+|-+=...|.-++--.|.. +. ..++|.|.++|.
T Consensus 592 ~~Vkr~Lle~i~~LC~FFGk--~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~s---eyllPLl~Q~lt 666 (1431)
T KOG1240|consen 592 PIVKRALLESIIPLCVFFGK--EKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVS---EYLLPLLQQGLT 666 (1431)
T ss_pred hHHHHHHHHHHHHHHHHhhh--cccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHH---HHHHHHHHHhcc
Confidence 66766554444444431111 0122447788889999999999986555555444444443 33 568999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCchhHHhHHHHHH
Q 003081 571 GRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLF 650 (850)
Q Consensus 571 ~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~~~~~~~iv~~~l~ 650 (850)
+.+.-+=..+|.+|..++... .+ ..+.+-+|+..+.--+.-.|.=+|++++.-+......+...+.+-++.|++.
T Consensus 667 D~EE~Viv~aL~~ls~Lik~~--ll---~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~ir 741 (1431)
T KOG1240|consen 667 DGEEAVIVSALGSLSILIKLG--LL---RKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIR 741 (1431)
T ss_pred CcchhhHHHHHHHHHHHHHhc--cc---chHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhH
Confidence 988777777777777776532 12 1234455555555555567888999999999999999988888888888888
Q ss_pred hhcc
Q 003081 651 EMCG 654 (850)
Q Consensus 651 ~~~~ 654 (850)
-..+
T Consensus 742 pfl~ 745 (1431)
T KOG1240|consen 742 PFLE 745 (1431)
T ss_pred Hhhh
Confidence 7765
No 49
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=0.023 Score=69.56 Aligned_cols=335 Identities=12% Similarity=0.081 Sum_probs=182.4
Q ss_pred cccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhC---CHH---------HHHHHHHHHHHhhcC---Cc---
Q 003081 390 GMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYA---TPS---------QAQKLIEETAALHID---DK--- 451 (850)
Q Consensus 390 ~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~---~~~---------~v~~li~~l~~~~~~---d~--- 451 (850)
|.++..-...+-+.+...+ . .++..|...+.++-.+++.+ ++. ...++++.+...|.+ +.
T Consensus 509 P~Dl~~sF~~la~~l~~al-~-~~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~ 586 (1176)
T KOG1248|consen 509 PVDLAESFTDLAPILGAAL-L-KRPELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKI 586 (1176)
T ss_pred CccHHHHHHHHHHHHHHHH-h-cchHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCcccccc
Confidence 3444433445666677777 3 45689999999999998875 211 134567777777752 11
Q ss_pred -hhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHh----cCCchHHH-HHHHHHHHHhcCCChhhHHhhHHHHHHHHH
Q 003081 452 -NSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISR----FEDDKYVS-DLFEELWEENTSGDRVTLQLYLGEIVSLIC 525 (850)
Q Consensus 452 -~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~----~d~~~~v~-~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~ 525 (850)
..|......+. .+.|......+.-.+..+. .+.++.++ .....++..++.-....-..++..+..+.-
T Consensus 587 l~~~~~~L~~i~------~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~ 660 (1176)
T KOG1248|consen 587 LASRSTVLEIIR------VDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLFTVDP 660 (1176)
T ss_pred HHHHHHHHHHHH------HHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHHHhhH
Confidence 11222221111 1222211122222222111 12233333 222233333222111011112222233333
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHH-hCcc-hhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCch
Q 003081 526 EGIASSSWSSKRKSAKAICKLGEI-LGES-LSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTP 603 (850)
Q Consensus 526 ~~L~d~s~~vr~~aa~alg~la~~-~g~~-l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~ 603 (850)
...++.+..++.-+...|+.++.. .|.. ..+++..|...|.+.++.-....|..-+.++..+...++.. .-.++
T Consensus 661 ~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e----~~~~i 736 (1176)
T KOG1248|consen 661 EFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAE----HCDLI 736 (1176)
T ss_pred HhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHH----HHHHH
Confidence 344556788999999999999976 2233 34568889999999998766677888888888888766521 22456
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHH--HHcCC---chhHHhHHHHHHhhcccccccCCCCCCCCCCCcccchhhh
Q 003081 604 FAIVDMVSSACRKKIKKYREAAFSCLEQVI--KAFRD---PKFFNIIFPLLFEMCGSTALNKSGQVPLPSDASKEESADE 678 (850)
Q Consensus 604 ~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~--~~~~~---~~~~~iv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (850)
+..++-++=..+..|..-|+.|+.||-.+. +.+.+ +...+++-+++..+..-- + . ++
T Consensus 737 ~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl-~--------------g---d~ 798 (1176)
T KOG1248|consen 737 PKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGL-V--------------G---DS 798 (1176)
T ss_pred HHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhh-c--------------c---cH
Confidence 666664444448889999999999988877 44422 233555555555554300 0 0 01
Q ss_pred cccccHHHHH--HhhhhhccccccccHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHhhcccCCCCCCCCcC
Q 003081 679 SVSAPLDKVL--DCVSSCIHVAHVNDIIEQEKNLVQLFTISLSPGFPWTVKMSAFSSIKELCSRLQKTLDDSAGTSPHAG 756 (850)
Q Consensus 679 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 756 (850)
++..... ++ .+++.-.+.....+...+.-+ + ++..+..++++++.+++..++.++..+... --.+|
T Consensus 799 ~~~~as~-Ivai~~il~e~~~~ld~~~l~~li~---~-V~~~L~s~sreI~kaAI~fikvlv~~~pe~-------~l~~~ 866 (1176)
T KOG1248|consen 799 TRVVASD-IVAITHILQEFKNILDDETLEKLIS---M-VCLYLASNSREIAKAAIGFIKVLVYKFPEE-------CLSPH 866 (1176)
T ss_pred HHHHHHH-HHHHHHHHHHHhccccHHHHHHHHH---H-HHHHHhcCCHHHHHHHHHHHHHHHHcCCHH-------HHhhh
Confidence 4444443 32 333333333333333222222 2 333556889999999999999998887754 22345
Q ss_pred hhHHHHHHHH
Q 003081 757 ISSLIQELFH 766 (850)
Q Consensus 757 ~~~~~~~~~~ 766 (850)
.+.|+..++.
T Consensus 867 ~~~LL~sll~ 876 (1176)
T KOG1248|consen 867 LEELLPSLLA 876 (1176)
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 50
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=0.0001 Score=81.61 Aligned_cols=198 Identities=14% Similarity=0.079 Sum_probs=143.4
Q ss_pred HHHHHhhhcCC---chHHHHHHHHhcc--chhhhhhhhHHhhHHHHHHHhhhhhc--hhhhhHHHHHHhhcCCCCHhHHH
Q 003081 62 ELCNLANEMGQ---PDLIYKFMDLANY--QVSLNSKRGAAFGFSKIAKQAGDALK--PHLRLLIPKLVRFQYDPDKNVQD 134 (850)
Q Consensus 62 ~l~~lA~~~g~---p~lv~~fm~la~~--~~~w~sr~gAa~gl~~I~~~~~~~l~--p~L~~lvp~L~r~~~Dp~~~VR~ 134 (850)
-++++++.++. +.+--.+-++..+ +..|+.|-+-.-+|+.+.... .+. +.+...+-.|-.-..||+..+|+
T Consensus 199 g~trlqr~m~~~~~~~~~~il~q~~ss~ts~~~~~ritd~Af~ael~~~~--~l~~~~lL~s~~~~la~ka~dp~a~~r~ 276 (533)
T KOG2032|consen 199 GLTRLQRFMACVQDLEMGKILAQLLSSITSEKENGRITDIAFFAELKRPK--ELDKTGLLGSVLLSLANKATDPSAKSRG 276 (533)
T ss_pred HHHHHHHHHHhhCCccHHHHHhhcccccchhcccchHHHHHHHHHHhCcc--cccccccHHHHHHHHHHhccCchhHHHH
Confidence 46777776553 3222222222322 234898887776777776654 444 56777888888888999999999
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCC-hhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcH
Q 003081 135 AMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRL-WRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKE 213 (850)
Q Consensus 135 a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~-wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~ 213 (850)
.++.+.....+..+..+..|...++..+..++-|.. -.|---+..+|.-+++-....++++|+..|--.+...+||.+.
T Consensus 277 ~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~ 356 (533)
T KOG2032|consen 277 MACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDD 356 (533)
T ss_pred HHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcCh
Confidence 999999999888667788899999999998886543 4555556666666666666678999999999999889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHH
Q 003081 214 TVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSIS 268 (850)
Q Consensus 214 ~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr 268 (850)
.+|.+|..+...|.+.+.+-++. .....+.+...|+++ -|.+.++-+-
T Consensus 357 ~~R~aa~~Lfg~L~~l~g~~~e~-----~Fte~v~k~~~~lll--hl~d~~p~va 404 (533)
T KOG2032|consen 357 KMRAAAFVLFGALAKLAGGGWEE-----FFTEQVKKRLAPLLL--HLQDPNPYVA 404 (533)
T ss_pred hhhhhHHHHHHHHHHHcCCCchh-----hhHHHHHhcccccee--eeCCCChHHH
Confidence 99999999888888776444432 123456678889987 3677666543
No 51
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.21 E-value=0.018 Score=71.65 Aligned_cols=459 Identities=14% Similarity=0.089 Sum_probs=231.4
Q ss_pred hhhhchhhhhHHHH--HHhhcCCCCHhH-HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q 003081 107 GDALKPHLRLLIPK--LVRFQYDPDKNV-QDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLAD 183 (850)
Q Consensus 107 ~~~l~p~L~~lvp~--L~r~~~Dp~~~V-R~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~ 183 (850)
+..++-++.+|-++ -.+...-+++.+ +..++.|...+... ......||.++.-++..++.+...+|.-|..++..
T Consensus 765 ~n~~K~~~~~Ik~~~~~~~~~~~~s~~~d~~~a~li~~~la~~--r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ 842 (1692)
T KOG1020|consen 765 ENELKYILSKIKDKEKSGRGPKLNSRFADDDDAKLIVFYLAHA--RSFSQSFDPYLKLILSVLGENAIALRTKALKCLSM 842 (1692)
T ss_pred HHHHHHHHHHhcchhhhccCcCCCCccccchhHHHHHHHHHhh--hHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 34555455555555 344444444433 33456677777644 34677899999999999999999999999999999
Q ss_pred HHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCc
Q 003081 184 IIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSK 263 (850)
Q Consensus 184 Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~ 263 (850)
+++..+.--.. ++.-...-+-+.|...+||+||..+..+.. + +.+ ....++.+.+.- ++.++
T Consensus 843 ive~Dp~vL~~---~dvq~~Vh~R~~DssasVREAaldLvGrfv---l--~~~-----e~~~qyY~~i~e-----rIlDt 904 (1692)
T KOG1020|consen 843 IVEADPSVLSR---PDVQEAVHGRLNDSSASVREAALDLVGRFV---L--SIP-----ELIFQYYDQIIE-----RILDT 904 (1692)
T ss_pred HHhcChHhhcC---HHHHHHHHHhhccchhHHHHHHHHHHhhhh---h--ccH-----HHHHHHHHHHHh-----hcCCC
Confidence 99865421111 233334445578999999999986665442 1 111 123344454443 56666
Q ss_pred hhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHH
Q 003081 264 VDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTL 343 (850)
Q Consensus 264 ~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal 343 (850)
.--||+-++..+-+|+.....- +-+|++.-.++.-..+.|.. +.++- .+++
T Consensus 905 gvsVRKRvIKIlrdic~e~pdf--~~i~~~cakmlrRv~DEEg~------------------I~kLv---------~etf 955 (1692)
T KOG1020|consen 905 GVSVRKRVIKILRDICEETPDF--SKIVDMCAKMLRRVNDEEGN------------------IKKLV---------RETF 955 (1692)
T ss_pred chhHHHHHHHHHHHHHHhCCCh--hhHHHHHHHHHHHhccchhH------------------HHHHH---------HHHH
Confidence 6789999999999998765442 22333333333333322110 11100 0111
Q ss_pred HHHH-----hhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcC-cHHHH
Q 003081 344 DLCI-----NVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEK-SAAAK 417 (850)
Q Consensus 344 ~~~~-----~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~-n~~Vr 417 (850)
..+. ...|......-++..+ ..++.+-.....+.+.++..+++--..-+ ...+.
T Consensus 956 ~klWF~p~~~~~d~~~~~~kI~~~~--------------------~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~ 1015 (1692)
T KOG1020|consen 956 LKLWFTPVPEVNDQPAKARKISLEV--------------------DVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVK 1015 (1692)
T ss_pred HHHhccCCCcccccHHHHHhhHHHH--------------------HHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhh
Confidence 1110 0011111111112111 11122212333455665555544321101 12222
Q ss_pred HHHHHHHHHHhhhCCHHHHHHHHHHHHHhhc----C-Cchh-hHHHHHHHHHHHhhchhhhh-hhHhhHhHHHHHHhcCC
Q 003081 418 RAFASACASVLKYATPSQAQKLIEETAALHI----D-DKNS-QISCAILLKSYSSVASDVLS-GYHAVIVPVIFISRFED 490 (850)
Q Consensus 418 ~~~a~alg~L~~~~~~~~v~~li~~l~~~~~----~-d~~~-r~~~~~~l~al~~~~~~~f~-~~~~~vlP~l~~~~~d~ 490 (850)
+.+...+-+.+....+ -+..++.+.-. + +... -..+..++..+++.-|..|. .|.-.+.|.+-...+..
T Consensus 1016 ~v~~~~v~~~~~L~~~----cl~~~i~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~ 1091 (1692)
T KOG1020|consen 1016 PVALAKVTHVLNLLTH----CLVEKISEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTI 1091 (1692)
T ss_pred HHHHhhcchHHHHHHH----HHHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccch
Confidence 2222222222211110 11111111111 1 1122 35667778888888888887 78888889875543221
Q ss_pred ch-HHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchh--hh----HHHHHH
Q 003081 491 DK-YVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLS--NY----HHVLLE 563 (850)
Q Consensus 491 ~~-~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~--~~----l~~llp 563 (850)
.+ .+-.....++....+-....-.-++..|-+-+...+-..+...=..|..|+|.++.+.-..+. .. +-..++
T Consensus 1092 ~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le 1171 (1692)
T KOG1020|consen 1092 EEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLE 1171 (1692)
T ss_pred HHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence 11 222222334433333211111234444444444544444444445578899999986433322 11 122333
Q ss_pred HHHHhcCCC----ChhhHHHHHHHHHHHHHhcccc-cccCC-------CCchHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 003081 564 SIMKEVPGR----LWEGKDALLYAIGSISTSCHKD-ISAED-------PTTPFAIVDMVSSACRKKIKKYREAAFSCLEQ 631 (850)
Q Consensus 564 ~L~~~L~~r----~~~gKe~vL~aL~~l~~~~~~~-l~~~~-------~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~ 631 (850)
.+..+..+. .++.=...+-.+|.++.-+.-. ....+ ....+.++..+..-++..+..+|++|+..||.
T Consensus 1172 ~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~ 1251 (1692)
T KOG1020|consen 1172 VIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGF 1251 (1692)
T ss_pred HHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 333332222 2232234455677777633211 11111 12345566677777777889999999999999
Q ss_pred HHHHcCC
Q 003081 632 VIKAFRD 638 (850)
Q Consensus 632 l~~~~~~ 638 (850)
++-.-+.
T Consensus 1252 ~ci~hp~ 1258 (1692)
T KOG1020|consen 1252 ICIQHPS 1258 (1692)
T ss_pred HHhhCch
Confidence 9987654
No 52
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.017 Score=67.59 Aligned_cols=411 Identities=12% Similarity=0.078 Sum_probs=201.3
Q ss_pred HHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHH
Q 003081 118 IPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHL 197 (850)
Q Consensus 118 vp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L 197 (850)
|..+.|.++|||+-+|-++.++...+- +.-..+-+|-.+-+..+|...+||..|+.|+--|-.-.+ ++.
T Consensus 110 IntfQk~L~DpN~LiRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~-e~k---- 178 (968)
T KOG1060|consen 110 INTFQKALKDPNQLIRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDP-EQK---- 178 (968)
T ss_pred HHHHHhhhcCCcHHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCCh-hhH----
Confidence 445556788999999999988665543 344556778888889999999999999999988866432 221
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHH
Q 003081 198 RRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMK 277 (850)
Q Consensus 198 ~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~ 277 (850)
.+|...+-.+|.|..+-|-.+|..+.. .+|...++-- ......+-.+|.+ + +.|. |...+.+|.+
T Consensus 179 ~qL~e~I~~LLaD~splVvgsAv~AF~---evCPerldLI-------HknyrklC~ll~d--v--deWg-QvvlI~mL~R 243 (968)
T KOG1060|consen 179 DQLEEVIKKLLADRSPLVVGSAVMAFE---EVCPERLDLI-------HKNYRKLCRLLPD--V--DEWG-QVVLINMLTR 243 (968)
T ss_pred HHHHHHHHHHhcCCCCcchhHHHHHHH---HhchhHHHHh-------hHHHHHHHhhccc--h--hhhh-HHHHHHHHHH
Confidence 244444555678988888666654433 3332222210 0112222222211 1 2232 3355666666
Q ss_pred HHHhcCcccccchHHHHHHHHHhc--cccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHH--------HHHHHHH
Q 003081 278 LVKGAGIAIRPHLSDLVSCMLESL--SSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMW--------DTLDLCI 347 (850)
Q Consensus 278 la~~~g~~l~P~lp~Lvp~LL~~L--s~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~--------eal~~~~ 347 (850)
=|+..=. .|.. +...++.= +...+...+|.. ..|..+. ..|+-.-...|+. =|+....
T Consensus 244 YAR~~l~--~P~~---~~~~~e~n~~~~~~~~~~~~~~---~P~~~d~----D~~lLL~stkpLl~S~n~sVVmA~aql~ 311 (968)
T KOG1060|consen 244 YARHQLP--DPTV---VDSSLEDNGRSCNLKDKYNEIR---TPYVNDP----DLKLLLQSTKPLLQSRNPSVVMAVAQLF 311 (968)
T ss_pred HHHhcCC--Cccc---cccccccCcccccccccccccC---CCcccCc----cHHHHHHhccHHHhcCCcHHHHHHHhHH
Confidence 5554211 1111 00000000 000000000000 0000000 1111111111111 1112222
Q ss_pred hhcCh-hhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHH
Q 003081 348 NVVDT-ESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACAS 426 (850)
Q Consensus 348 ~~ld~-~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~ 426 (850)
-++.. ..+..++-.|+.+++.. -.+|-...+.|..++.+.+.-|.||...|. + ....++.-+.+. +..
T Consensus 312 y~lAP~~~~~~i~kaLvrLLrs~--~~vqyvvL~nIa~~s~~~~~lF~P~lKsFf------v-~ssDp~~vk~lK--lei 380 (968)
T KOG1060|consen 312 YHLAPKNQVTKIAKALVRLLRSN--REVQYVVLQNIATISIKRPTLFEPHLKSFF------V-RSSDPTQVKILK--LEI 380 (968)
T ss_pred HhhCCHHHHHHHHHHHHHHHhcC--CcchhhhHHHHHHHHhcchhhhhhhhhceE------e-ecCCHHHHHHHH--HHH
Confidence 22322 24567888888888875 345666777787888888888999877542 1 012222222222 222
Q ss_pred HhhhCCHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhc
Q 003081 427 VLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENT 506 (850)
Q Consensus 427 L~~~~~~~~v~~li~~l~~~~~~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~ 506 (850)
|...+....+..++.++..-.. +.+ |..++.++.+|.+++. ......+..+.-+..-+...++.|...+.-+..-+.
T Consensus 381 Ls~La~esni~~ILrE~q~YI~-s~d-~~faa~aV~AiGrCA~-~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Ll 457 (968)
T KOG1060|consen 381 LSNLANESNISEILRELQTYIK-SSD-RSFAAAAVKAIGRCAS-RIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLL 457 (968)
T ss_pred HHHHhhhccHHHHHHHHHHHHh-cCc-hhHHHHHHHHHHHHHH-hhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 2233334444444444433222 222 2466777777766543 223344445544443333335555444434444444
Q ss_pred CCChhhHHhhHHHHHHHHHHhhcCCC-HHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 003081 507 SGDRVTLQLYLGEIVSLICEGIASSS-WSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIG 585 (850)
Q Consensus 507 ~~~~~~i~~yl~eIl~ll~~~L~d~s-~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~ 585 (850)
+.-+.....++..+..++ .+-. ..-|....-.+|..|+..+ .-.|.++..+.+.+.......|..||..-+
T Consensus 458 q~~p~~h~~ii~~La~ll----dti~vp~ARA~IiWLige~~e~vp----ri~PDVLR~laksFs~E~~evKlQILnL~a 529 (968)
T KOG1060|consen 458 QKDPAEHLEILFQLARLL----DTILVPAARAGIIWLIGEYCEIVP----RIAPDVLRKLAKSFSDEGDEVKLQILNLSA 529 (968)
T ss_pred hhChHHHHHHHHHHHHHh----hhhhhhhhhceeeeeehhhhhhcc----hhchHHHHHHHHhhccccchhhHHHHHhhh
Confidence 432222222333333333 2211 1112222223677666532 135788888999998877888988887665
Q ss_pred HHH
Q 003081 586 SIS 588 (850)
Q Consensus 586 ~l~ 588 (850)
.+-
T Consensus 530 KLy 532 (968)
T KOG1060|consen 530 KLY 532 (968)
T ss_pred hhe
Confidence 553
No 53
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.05 E-value=0.055 Score=66.37 Aligned_cols=132 Identities=20% Similarity=0.269 Sum_probs=91.1
Q ss_pred hhhhhhhHHhhHHHHHHHhhhhhc-hhhhhHHHHHHh---------hcCCC-CHhHHHHHHHHHHHhccCChHHHHHHHH
Q 003081 88 SLNSKRGAAFGFSKIAKQAGDALK-PHLRLLIPKLVR---------FQYDP-DKNVQDAMAHIWKSLVADPKRTIDEHLD 156 (850)
Q Consensus 88 ~w~sr~gAa~gl~~I~~~~~~~l~-p~L~~lvp~L~r---------~~~Dp-~~~VR~a~~~iw~~Lv~d~~~~i~~~~~ 156 (850)
.|..|+|++.|+-.|++..++.+. ..+..++-+|.+ |..|. ..-||.+.....+++..+. ...-++
T Consensus 90 ~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~~~---~~s~~~ 166 (1549)
T KOG0392|consen 90 QWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLKHM---DESLIK 166 (1549)
T ss_pred hhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHhh---hhHhhH
Confidence 599999999999999887654443 123334444332 33332 3468988888888887653 344456
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 003081 157 LIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLC 223 (850)
Q Consensus 157 ~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~ 223 (850)
.+++.++..+..+.|++|.+...++...+. .-.+.+...++.+++.....++|....||..|.+..
T Consensus 167 ~~~~il~q~~~q~~w~ir~Ggll~iky~~a-ir~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l 232 (1549)
T KOG0392|consen 167 ETLDILLQMLRQPNWEIRHGGLLGIKYNVA-IRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAAQFL 232 (1549)
T ss_pred HHHHHHHHHHcCcchhheechHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHh
Confidence 666666666667799999999988877765 333455566667777777788999899988765443
No 54
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.02 E-value=3.1e-05 Score=71.53 Aligned_cols=112 Identities=18% Similarity=0.178 Sum_probs=88.4
Q ss_pred hHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhchhhh-hHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHH
Q 003081 74 DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLR-LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTID 152 (850)
Q Consensus 74 ~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L~-~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~ 152 (850)
..+..+..+..+. .|..|++++.++++++....+.....+. .++|.|..++.|+++.||..+..++..++.+++....
T Consensus 7 ~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 7 GGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred CChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence 3566666666655 4899999999999998764333333344 7899999999999999999999999999987754444
Q ss_pred HHHHH-HHHHHHHhhCCCChhHHHHHHHHHHHHHc
Q 003081 153 EHLDL-IFDDLLIQSGSRLWRSREASCLSLADIIQ 186 (850)
Q Consensus 153 ~~~~~-Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~ 186 (850)
...+. +++.++..+.+.+.++|+.++.++.+|.+
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 44443 88999999999999999999999998853
No 55
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.067 Score=62.82 Aligned_cols=201 Identities=14% Similarity=0.149 Sum_probs=132.8
Q ss_pred hHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhch-hhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccC------
Q 003081 74 DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKP-HLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVAD------ 146 (850)
Q Consensus 74 ~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p-~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d------ 146 (850)
+-|.++.+-+.++.....||.|+-||-+...+.+..+.. -++.+|-.|-|=+.||. .|..+...+...+..|
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E-~ik~~LdTl~il~~~dd~~~v~ 100 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPE-IIKYALDTLLILTSHDDSPEVM 100 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHH-HHHHHHHHHHHHHhcCcchhhc
Confidence 457788888888877899999999999998888665432 24456777766666664 3454555555555543
Q ss_pred --Ch--HHHHHHH-------HHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCch--hhhHHHHHHHHHHHHHhccCcH
Q 003081 147 --PK--RTIDEHL-------DLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFD--QVGKHLRRIWTAAFRAMDDIKE 213 (850)
Q Consensus 147 --~~--~~i~~~~-------~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~--~l~~~L~~i~~~l~~~ldD~k~ 213 (850)
+. +.+..++ +..+.-|+..+...+.+||-.++.-|..++..++.+ +..-..|.-+..+..+++|.++
T Consensus 101 dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE 180 (970)
T KOG0946|consen 101 DDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSRE 180 (970)
T ss_pred ccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhh
Confidence 11 1112222 345677888888889999999999999999988754 2333456777888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHh
Q 003081 214 TVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKG 281 (850)
Q Consensus 214 ~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~ 281 (850)
.+|..|.-++..+.+-+... ..-.....++..++.++-..|=. +..-|-.-++..+.++-|.
T Consensus 181 ~IRNe~iLlL~eL~k~n~~I-----QKlVAFENaFerLfsIIeeEGg~-dGgIVveDCL~ll~NLLK~ 242 (970)
T KOG0946|consen 181 PIRNEAILLLSELVKDNSSI-----QKLVAFENAFERLFSIIEEEGGL-DGGIVVEDCLILLNNLLKN 242 (970)
T ss_pred hhchhHHHHHHHHHccCchH-----HHHHHHHHHHHHHHHHHHhcCCC-CCcchHHHHHHHHHHHHhh
Confidence 99999987777765422100 00012334566666665444422 2224556677888888775
No 56
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.014 Score=68.48 Aligned_cols=385 Identities=12% Similarity=0.088 Sum_probs=210.2
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 003081 160 DDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLT 239 (850)
Q Consensus 160 ~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~ 239 (850)
..|-+-+.+.+ ....|.||..|-.-.+. ++.+ ++.|..-+++...++.||+-|...+-.+ +|..
T Consensus 110 NslknDL~s~n---q~vVglAL~alg~i~s~-Emar---dlapeVe~Ll~~~~~~irKKA~Lca~r~----irK~----- 173 (866)
T KOG1062|consen 110 NSLKNDLNSSN---QYVVGLALCALGNICSP-EMAR---DLAPEVERLLQHRDPYIRKKAALCAVRF----IRKV----- 173 (866)
T ss_pred HHHHhhccCCC---eeehHHHHHHhhccCCH-HHhH---HhhHHHHHHHhCCCHHHHHHHHHHHHHH----HHcC-----
Confidence 33444455544 34556666555443443 3333 5556667788889999998665433333 2221
Q ss_pred cchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhhhc
Q 003081 240 EISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANA 319 (850)
Q Consensus 240 ~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~ 319 (850)
...+..++|.--. -|.+...-|-..++..+.++++.....+. |.-+++|.|...|...- ...|
T Consensus 174 -----P~l~e~f~~~~~~-lL~ek~hGVL~~~l~l~~e~c~~~~~~l~-~fr~l~~~lV~iLk~l~----------~~~y 236 (866)
T KOG1062|consen 174 -----PDLVEHFVIAFRK-LLCEKHHGVLIAGLHLITELCKISPDALS-YFRDLVPSLVKILKQLT----------NSGY 236 (866)
T ss_pred -----chHHHHhhHHHHH-HHhhcCCceeeeHHHHHHHHHhcCHHHHH-HHHHHHHHHHHHHHHHh----------cCCC
Confidence 1233444443221 12233334444566778888877544433 33345555555554210 0111
Q ss_pred ccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHH
Q 003081 320 GIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSM 399 (850)
Q Consensus 320 ~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~ 399 (850)
...-| .. .+ +.|. ++--+-++++.+... +......-..+|..+++++.. -+.-...
T Consensus 237 speyd-v~-----gi-~dPF---------------LQi~iLrlLriLGq~-d~daSd~M~DiLaqvatntds-skN~GnA 292 (866)
T KOG1062|consen 237 SPEYD-VH-----GI-SDPF---------------LQIRILRLLRILGQN-DADASDLMNDILAQVATNTDS-SKNAGNA 292 (866)
T ss_pred CCccC-cc-----CC-CchH---------------HHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHhcccc-cccchhH
Confidence 00000 00 00 0011 111122233333222 223333445556666655431 1222223
Q ss_pred HHHHHHHhhhh-cCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhchhhhhhhHhh
Q 003081 400 LLRLLFPVVKE-EKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAV 478 (850)
Q Consensus 400 lL~~Ll~~l~~-D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~~d~~~r~~~~~~l~al~~~~~~~f~~~~~~ 478 (850)
+|=-++..+.+ +.+...|.-++.++|..+.. .|.+.|-++...+..+...-+...+.|...
T Consensus 293 ILYE~V~TI~~I~~~~~LrvlainiLgkFL~n------------------~d~NirYvaLn~L~r~V~~d~~avqrHr~t 354 (866)
T KOG1062|consen 293 ILYECVRTIMDIRSNSGLRVLAINILGKFLLN------------------RDNNIRYVALNMLLRVVQQDPTAVQRHRST 354 (866)
T ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHhcC------------------CccceeeeehhhHHhhhcCCcHHHHHHHHH
Confidence 33333333311 46778888888788766422 355667777878887777777777777776
Q ss_pred HhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhH
Q 003081 479 IVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYH 558 (850)
Q Consensus 479 vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l 558 (850)
++ .+..|+|..++.-+.|+.-.++.+. .++..+++++.. |.+.+.+.|...+..+..+++++.+.=.-|+
T Consensus 355 Il----eCL~DpD~SIkrralELs~~lvn~~--Nv~~mv~eLl~f----L~~~d~~~k~~~as~I~~laEkfaP~k~W~i 424 (866)
T KOG1062|consen 355 IL----ECLKDPDVSIKRRALELSYALVNES--NVRVMVKELLEF----LESSDEDFKADIASKIAELAEKFAPDKRWHI 424 (866)
T ss_pred HH----HHhcCCcHHHHHHHHHHHHHHhccc--cHHHHHHHHHHH----HHhccHHHHHHHHHHHHHHHHhcCCcchhHH
Confidence 65 4567888888877777766666642 355555555554 4555778999999999999998877666688
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHH--HhhcCHHHHHHHHHHHHHHHHHc
Q 003081 559 HVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSA--CRKKIKKYREAAFSCLEQVIKAF 636 (850)
Q Consensus 559 ~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e--~~r~~~~~R~~Al~~Lg~l~~~~ 636 (850)
+.++.++..+-. -+++.+...|-.+..+..... +......+...+... ..-..+.+-+.|+||+|+|-.-+
T Consensus 425 dtml~Vl~~aG~----~V~~dv~~nll~LIa~~~~e~---~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdll 497 (866)
T KOG1062|consen 425 DTMLKVLKTAGD----FVNDDVVNNLLRLIANAFQEL---HEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLL 497 (866)
T ss_pred HHHHHHHHhccc----ccchhhHHHHHHHHhcCCcch---hhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHh
Confidence 888888877653 246667777777765542111 111122232233221 11245778999999999988544
No 57
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.97 E-value=0.061 Score=60.90 Aligned_cols=256 Identities=13% Similarity=0.153 Sum_probs=141.2
Q ss_pred hhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHH
Q 003081 348 NVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASV 427 (850)
Q Consensus 348 ~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L 427 (850)
++++.+.....+..|--.+++. ...+|-.|.+.+..|++..+..+. .+.+=+..|+ +|.|.++. ..|+-.|
T Consensus 294 ~nv~~~~~~~~vs~L~~fL~s~-rv~~rFsA~Riln~lam~~P~kv~-vcN~evEsLI----sd~Nr~Is---tyAITtL 364 (898)
T COG5240 294 ENVGSQFVDQTVSSLRTFLKST-RVVLRFSAMRILNQLAMKYPQKVS-VCNKEVESLI----SDENRTIS---TYAITTL 364 (898)
T ss_pred hccCHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhhCCceee-ecChhHHHHh----hcccccch---HHHHHHH
Confidence 4455554555555555555553 445677999999999998886652 2333333332 46665554 4567778
Q ss_pred hhhCCHHHHHHHHHHHHHhhcC-CchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhc
Q 003081 428 LKYATPSQAQKLIEETAALHID-DKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENT 506 (850)
Q Consensus 428 ~~~~~~~~v~~li~~l~~~~~~-d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~ 506 (850)
++.-.++.+..++..+.....+ .++.+..+.+++.+++-..|..-..++.-+...+. +...-+-+....+...++.
T Consensus 365 LKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~---~eGg~eFK~~~Vdaisd~~ 441 (898)
T COG5240 365 LKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLL---QEGGLEFKKYMVDAISDAM 441 (898)
T ss_pred HHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHH---hcccchHHHHHHHHHHHHH
Confidence 8888888888888877766532 24556777888888876655433333332222221 1111123333344444433
Q ss_pred CCChhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhh--hHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 003081 507 SGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSN--YHHVLLESIMKEVPGRLWEGKDALLYAI 584 (850)
Q Consensus 507 ~~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~--~l~~llp~L~~~L~~r~~~gKe~vL~aL 584 (850)
...+..- +.++..++..+.|-. -.+.+...+|-+....+..-.| |+..+..-++ -..--.|.+.+.||
T Consensus 442 ~~~p~sk----EraLe~LC~fIEDce--y~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~i----LEN~ivRsaAv~aL 511 (898)
T COG5240 442 ENDPDSK----ERALEVLCTFIEDCE--YHQITVRILGILGREGPRAKTPGKYVRHIYNRLI----LENNIVRSAAVQAL 511 (898)
T ss_pred hhCchHH----HHHHHHHHHHHhhcc--hhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHH----HhhhHHHHHHHHHH
Confidence 3221111 123333344444422 2233344455555444332222 3333333211 01123688889999
Q ss_pred HHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 003081 585 GSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQ 631 (850)
Q Consensus 585 ~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~ 631 (850)
+.|+.+..+ .-....+..++-|.+.+.++++|-.|--.+..
T Consensus 512 skf~ln~~d------~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~ 552 (898)
T COG5240 512 SKFALNISD------VVSPQSVENALKRCLNDQDDEVRDRASFLLRN 552 (898)
T ss_pred HHhccCccc------cccHHHHHHHHHHHhhcccHHHHHHHHHHHHh
Confidence 888765443 22345666777788889999999998776654
No 58
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.96 E-value=5.9e-05 Score=69.64 Aligned_cols=110 Identities=16% Similarity=0.109 Sum_probs=84.5
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHH-HHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhH
Q 003081 117 LIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLD-LIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGK 195 (850)
Q Consensus 117 lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~-~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~ 195 (850)
++|.|..++.|+++.+|..+..+...+..+.+......++ .+++.++..+.++++++|..++.+++++.++.+.....-
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 6777888889999999999999888888765445555555 789999999999999999999999999988654211111
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Q 003081 196 HLRRIWTAAFRAMDDIKETVRTAGDKLCRSV 226 (850)
Q Consensus 196 ~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L 226 (850)
+-..+++.+.+.+++.+..+|+.+..++..+
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 2224688888899998899998876554443
No 59
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.93 E-value=0.1 Score=62.26 Aligned_cols=251 Identities=10% Similarity=0.046 Sum_probs=148.2
Q ss_pred CchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHH--H-HHHHHHHHH---
Q 003081 372 LNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQ--A-QKLIEETAA--- 445 (850)
Q Consensus 372 ~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~--v-~~li~~l~~--- 445 (850)
.+.|+++++.++..+ -...+.|+.+.+++.++... .+.+..|-.....++..+++..++.. + .++++....
T Consensus 505 ~~~ki~a~~~~~~~~--~~~vl~~~~p~ild~L~qla-s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~ 581 (1005)
T KOG2274|consen 505 PPVKISAVRAFCGYC--KVKVLLSLQPMILDGLLQLA-SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFL 581 (1005)
T ss_pred CchhHHHHHHHHhcc--CceeccccchHHHHHHHHHc-ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHH
Confidence 345666776665554 22457788999999999988 67888999999999999998877543 2 244555444
Q ss_pred hhcCCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCc----hHHHHHHHHHHHHhcCCChhhH-HhhHHHH
Q 003081 446 LHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDD----KYVSDLFEELWEENTSGDRVTL-QLYLGEI 520 (850)
Q Consensus 446 ~~~~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~----~~v~~~~~~v~~~l~~~~~~~i-~~yl~eI 520 (850)
.|++|+-.-..+-+++..++.. .+-..++...++|-+..-+..+. ........+++..++.+++..+ .......
T Consensus 582 k~s~DP~V~~~~qd~f~el~q~-~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~ 660 (1005)
T KOG2274|consen 582 KYSEDPQVASLAQDLFEELLQI-AANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYA 660 (1005)
T ss_pred HhcCCchHHHHHHHHHHHHHHH-HHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 3456773333334444455442 23345667778887765454332 3467777788887776654433 3444555
Q ss_pred HHHHHHh-hcCCCHHHHHHHHHHHHHHHHHhCcchh-----h--hHHHHHHHHHHhcCCCChhhHHH-HHHHHHHHHHhc
Q 003081 521 VSLICEG-IASSSWSSKRKSAKAICKLGEILGESLS-----N--YHHVLLESIMKEVPGRLWEGKDA-LLYAIGSISTSC 591 (850)
Q Consensus 521 l~ll~~~-L~d~s~~vr~~aa~alg~la~~~g~~l~-----~--~l~~llp~L~~~L~~r~~~gKe~-vL~aL~~l~~~~ 591 (850)
++.+.++ +-+.+-.+-+.+..|+..+..+..+.+. + .+..+|.++.+-|..++.+--.. +=.-+..+..+.
T Consensus 661 FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a 740 (1005)
T KOG2274|consen 661 FPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHA 740 (1005)
T ss_pred hHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHH
Confidence 6666666 5566778888899999998877433322 2 25588888887776654322111 111122333333
Q ss_pred ccccccCCCCchHHHHHHHHHHHh-hcCHHHHHHHHHHHH
Q 003081 592 HKDISAEDPTTPFAIVDMVSSACR-KKIKKYREAAFSCLE 630 (850)
Q Consensus 592 ~~~l~~~~~~~~~~i~~~l~~e~~-r~~~~~R~~Al~~Lg 630 (850)
+..+ .+.+++|+.+++.... -.+..+-+.-+..+.
T Consensus 741 ~~el----~~n~d~IL~Avisrmq~ae~lsviQsLi~Vfa 776 (1005)
T KOG2274|consen 741 SSEL----GPNLDQILRAVISRLQQAETLSVIQSLIMVFA 776 (1005)
T ss_pred HHHh----chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3332 2456667665554432 233444333333333
No 60
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.93 E-value=0.15 Score=64.05 Aligned_cols=147 Identities=15% Similarity=0.138 Sum_probs=95.5
Q ss_pred hhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcc
Q 003081 108 DALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQG 187 (850)
Q Consensus 108 ~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~ 187 (850)
..+++||..|+-.| ..|.+.||.-+.+|...++.-++.+. ..+.+-..+-..+.|.+--||+||..-+|.++-.
T Consensus 812 ~sfD~yLk~Il~~l----~e~~ialRtkAlKclS~ive~Dp~vL--~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~ 885 (1692)
T KOG1020|consen 812 QSFDPYLKLILSVL----GENAIALRTKALKCLSMIVEADPSVL--SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLS 885 (1692)
T ss_pred HhhHHHHHHHHHHh----cCchHHHHHHHHHHHHHHHhcChHhh--cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhc
Confidence 45678877777666 79999999999999999986443222 2356677788888999999999999888777654
Q ss_pred CCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHH
Q 003081 188 RKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSI 267 (850)
Q Consensus 188 ~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~ev 267 (850)
.+ +.+..|+.+|... .-|..-+||+-+.+..+. +| +... +...+... .--++. -+.++...|
T Consensus 886 ~~-e~~~qyY~~i~er----IlDtgvsVRKRvIKIlrd---ic----~e~p----df~~i~~~-cakmlr-Rv~DEEg~I 947 (1692)
T KOG1020|consen 886 IP-ELIFQYYDQIIER----ILDTGVSVRKRVIKILRD---IC----EETP----DFSKIVDM-CAKMLR-RVNDEEGNI 947 (1692)
T ss_pred cH-HHHHHHHHHHHhh----cCCCchhHHHHHHHHHHH---HH----HhCC----ChhhHHHH-HHHHHH-HhccchhHH
Confidence 43 4566677776544 346668999987654443 23 3221 12222222 222231 244444447
Q ss_pred HHHHHHHHHHH
Q 003081 268 SKASIGVVMKL 278 (850)
Q Consensus 268 r~~a~~~L~~l 278 (850)
+..++.++.++
T Consensus 948 ~kLv~etf~kl 958 (1692)
T KOG1020|consen 948 KKLVRETFLKL 958 (1692)
T ss_pred HHHHHHHHHHH
Confidence 77777777666
No 61
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.012 Score=69.01 Aligned_cols=369 Identities=13% Similarity=0.142 Sum_probs=178.5
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhC---CCChhHHHHHHHHHHHHHc-------cCC----chhhhHHH-
Q 003081 133 QDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSG---SRLWRSREASCLSLADIIQ-------GRK----FDQVGKHL- 197 (850)
Q Consensus 133 R~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~---~~~wRVReaa~~Al~~Ll~-------~~~----~~~l~~~L- 197 (850)
||++++..+.|......-+-..|...++.++.... +.+|+-.+.+..-+..+.- |.. .-.+.+|+
T Consensus 379 RR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~ 458 (960)
T KOG1992|consen 379 RRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFA 458 (960)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHH
Confidence 56678888888765543344455555555555332 4579998888765555442 111 11222332
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHH
Q 003081 198 RRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMK 277 (850)
Q Consensus 198 ~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~ 277 (850)
.+|.|.+..---...+.++.++.+-.-++.+ .-+++.+-.++|.++ +++.++..-|-.+|..++-+
T Consensus 459 ~~ilp~L~s~~vn~~pilka~aIKy~~~FR~-------------ql~~~~lm~~~p~li-~~L~a~s~vvhsYAA~aiEk 524 (960)
T KOG1992|consen 459 NQILPDLLSPNVNEFPILKADAIKYIYTFRN-------------QLGKEHLMALLPRLI-RFLEAESRVVHSYAAIAIEK 524 (960)
T ss_pred HHhhHHhccCccccccchhhcccceeeeecc-------------cCChHHHHHHHHHHH-HhccCcchHHHHHHHHHHHh
Confidence 3344444321112334455444322221111 113456667888887 57777778888899988887
Q ss_pred HHHhcC---------cccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHh
Q 003081 278 LVKGAG---------IAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCIN 348 (850)
Q Consensus 278 la~~~g---------~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~ 348 (850)
+-...+ ..+.||...++..|...++..+.+ -+.++|.++-..+.
T Consensus 525 il~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~---------------------------EneylmKaImRii~ 577 (960)
T KOG1992|consen 525 LLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKA---------------------------ENEYLMKAIMRIIS 577 (960)
T ss_pred ccccccCccccccchhhcchHHHHHHHHHHHhccCCccc---------------------------ccHHHHHHHHHHHH
Confidence 754322 457888888888888877744321 11234556655555
Q ss_pred hcChhh---HhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Q 003081 349 VVDTES---LDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACA 425 (850)
Q Consensus 349 ~ld~~~---l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg 425 (850)
..++.. .+.+++.|.+.+......|++- .|..|+=.-+..++... .+.+++.-...-.++-
T Consensus 578 i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P---------------~fnHYLFEsi~~li~~t-~~~~~~~vs~~e~aL~ 641 (960)
T KOG1992|consen 578 ILQSAIIPHAPELLRQLTEIVEEVSKNPSNP---------------QFNHYLFESIGLLIRKT-CKANPSAVSSLEEALF 641 (960)
T ss_pred hCHHhhhhhhhHHHHHHHHHHHHHhcCCCCc---------------hhHHHHHHHHHHHHHHH-hccCchHHHHHHHHHH
Confidence 554443 3445555544442211112111 11112222222222222 1222221111111111
Q ss_pred HHhhhCCHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHh
Q 003081 426 SVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEEN 505 (850)
Q Consensus 426 ~L~~~~~~~~v~~li~~l~~~~~~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l 505 (850)
-++...-.+.+.+++++..+++ +.++..=....++.|.+..+.++.-.+-.+...-+.+. .++..+
T Consensus 642 p~fq~Il~eDI~EfiPYvfQll----------a~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalv----rLl~af 707 (960)
T KOG1992|consen 642 PVFQTILSEDIQEFIPYVFQLL----------AVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALV----RLLQAF 707 (960)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHH----HHHHHH
Confidence 1111000122344444443332 11111111123444444333222111111222223222 222222
Q ss_pred cCCChhhHH--hhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCc-chhhhHHHHHHHHHHhcCC-CCh
Q 003081 506 TSGDRVTLQ--LYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGE-SLSNYHHVLLESIMKEVPG-RLW 574 (850)
Q Consensus 506 ~~~~~~~i~--~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~-~l~~~l~~llp~L~~~L~~-r~~ 574 (850)
...+...+. ..++.|+..+.+.+.|+. .-+.+...+..+...++. .+.||+.+++..|.+.+++ |+.
T Consensus 708 lk~g~~~~~~~~~l~~iLGifqkLiaSka--~Dh~GF~LLn~i~~~~~~~~~~py~k~i~~llf~RlqnskT~ 778 (960)
T KOG1992|consen 708 LKTGSQIVEAADKLSGILGIFQKLIASKA--NDHHGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQNSKTE 778 (960)
T ss_pred HhcCchhhcccccchhHHHHHHHHhcCcc--cchhHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccCcH
Confidence 221112222 346678888888877654 346788899999988765 5788999999999999965 553
No 62
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.89 E-value=0.00058 Score=72.09 Aligned_cols=292 Identities=14% Similarity=0.158 Sum_probs=167.1
Q ss_pred chHHHHHHHhhhcCCc-------hHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhchhhh-hHHHHHHhhcCCCC
Q 003081 58 STYKELCNLANEMGQP-------DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLR-LLIPKLVRFQYDPD 129 (850)
Q Consensus 58 styk~l~~lA~~~g~p-------~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L~-~lvp~L~r~~~Dp~ 129 (850)
++||-=..|+.+-..| ..|++|+.+..++..---.--|+.++.+|.++...+-.--+. ..+|.+...+++++
T Consensus 91 av~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~ 170 (526)
T COG5064 91 AVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTE 170 (526)
T ss_pred HHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCch
Confidence 4566555566666666 368888887733211111125788999999988554432222 57888888899999
Q ss_pred HhHHHHHHHHHHHhccCChHHHHHHH--HHHHHHHHHhhCCCCh--hHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHH
Q 003081 130 KNVQDAMAHIWKSLVADPKRTIDEHL--DLIFDDLLIQSGSRLW--RSREASCLSLADIIQGRKFDQVGKHLRRIWTAAF 205 (850)
Q Consensus 130 ~~VR~a~~~iw~~Lv~d~~~~i~~~~--~~Il~~Ll~~l~~~~w--RVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~ 205 (850)
..||..+.=+.+-++.|+.. .+.|. --.|+.+|.-+.+... ..-..+.+.|.+|..|+.++.--..+.+.+|.++
T Consensus 171 ~~V~eQavWALGNiAGDS~~-~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~ 249 (526)
T COG5064 171 DDVREQAVWALGNIAGDSEG-CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILA 249 (526)
T ss_pred HHHHHHHHHHhccccCCchh-HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHH
Confidence 99999988777888888754 33343 1244444444433322 3445678999999999877766666778888888
Q ss_pred HHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHH-hHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCc
Q 003081 206 RAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDI-VLPFLLAEGILSKVDSISKASIGVVMKLVKGAGI 284 (850)
Q Consensus 206 ~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~-lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~ 284 (850)
+++--..+.|- ..+||+++-.. | |+.+....+++. +.+-|++ -|.+++..++.-++..+++|+.....
T Consensus 250 KLiys~D~evl---vDA~WAiSYls----D---g~~E~i~avld~g~~~RLvE-lLs~~sa~iqtPalR~vGNIVTG~D~ 318 (526)
T COG5064 250 KLIYSRDPEVL---VDACWAISYLS----D---GPNEKIQAVLDVGIPGRLVE-LLSHESAKIQTPALRSVGNIVTGSDD 318 (526)
T ss_pred HHHhhcCHHHH---HHHHHHHHHhc----c---CcHHHHHHHHhcCCcHHHHH-HhcCccccccCHHHHhhcCeeecCcc
Confidence 87754445442 23467665321 1 222223334432 2233332 24456667777888888888764321
Q ss_pred ccccch-HHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHH
Q 003081 285 AIRPHL-SDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLA 363 (850)
Q Consensus 285 ~l~P~l-p~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~ 363 (850)
.-.-.+ -..++.|..+|++......--.||...+. +. .+ .+-+..++ | ..++|.|+
T Consensus 319 QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNI--TA-----------Gn---teqiqavi---d----~nliPpLi 375 (526)
T COG5064 319 QTQVIINCGALKAFRSLLSSPKENIRKEACWTISNI--TA-----------GN---TEQIQAVI---D----ANLIPPLI 375 (526)
T ss_pred ceehheecccHHHHHHHhcChhhhhhhhhheeeccc--cc-----------CC---HHHHHHHH---h----cccchHHH
Confidence 100000 02245555566665444433444433321 00 00 00011111 1 25788888
Q ss_pred HHHhccCCCchHhhHHHHHHHH
Q 003081 364 RLVRSGIGLNTRVGVASFISLL 385 (850)
Q Consensus 364 ~~lk~~~~~~tr~~a~~~l~~L 385 (850)
+.+... ...+|-.||-.+...
T Consensus 376 ~lls~a-e~k~kKEACWAisNa 396 (526)
T COG5064 376 HLLSSA-EYKIKKEACWAISNA 396 (526)
T ss_pred HHHHHH-HHHHHHHHHHHHHhh
Confidence 888765 556666777766554
No 63
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.88 E-value=0.00084 Score=81.13 Aligned_cols=253 Identities=15% Similarity=0.157 Sum_probs=168.3
Q ss_pred hhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCC---
Q 003081 356 DQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYAT--- 432 (850)
Q Consensus 356 ~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~--- 432 (850)
--+++.+...+|.-..-.+|..|...+..|+.....+. -++++++-++-.+ .|..+.||-.+..++..++....
T Consensus 421 ~l~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~--~LDRVlPY~v~l~-~Ds~a~Vra~Al~Tlt~~L~~Vr~~~ 497 (1431)
T KOG1240|consen 421 VLFVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEV--KLDRVLPYFVHLL-MDSEADVRATALETLTELLALVRDIP 497 (1431)
T ss_pred eeeHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHH--HHhhhHHHHHHHh-cCchHHHHHHHHHHHHHHHhhccCCC
Confidence 34678888777765556789999999988877765544 6788888888888 79999999888888777665322
Q ss_pred HHH---HHH-HHHHHHHhhcC-Cc-hhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHH----Hhc-CCchHHHHHHHHH
Q 003081 433 PSQ---AQK-LIEETAALHID-DK-NSQISCAILLKSYSSVASDVLSGYHAVIVPVIFI----SRF-EDDKYVSDLFEEL 501 (850)
Q Consensus 433 ~~~---v~~-li~~l~~~~~~-d~-~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~----~~~-d~~~~v~~~~~~v 501 (850)
... ..+ +++.+..+..+ ++ ..|.+.+..+..+++.+.. |+-+.+. +|. +++.+...
T Consensus 498 ~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r--------Fle~~q~~~~~g~~n~~nset~~----- 564 (1431)
T KOG1240|consen 498 PSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR--------FLELTQELRQAGMLNDPNSETAP----- 564 (1431)
T ss_pred cccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH--------HHHHHHHHHhcccccCccccccc-----
Confidence 111 222 23334444433 22 3477777777777665431 3333222 222 22211000
Q ss_pred HHHhcCCChhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHH
Q 003081 502 WEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALL 581 (850)
Q Consensus 502 ~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL 581 (850)
-+........-...+-+.+...+.|++.-||++-...|+.||..+|..=.. +.|++.|+.=|++++|..|-..+
T Consensus 565 ----~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksN--D~iLshLiTfLNDkDw~LR~aFf 638 (1431)
T KOG1240|consen 565 ----EQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSN--DVILSHLITFLNDKDWRLRGAFF 638 (1431)
T ss_pred ----ccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccc--cchHHHHHHHhcCccHHHHHHHH
Confidence 001111122223334456667789999999999999999999988864222 56888999999999999999999
Q ss_pred HHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHc
Q 003081 582 YAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAF 636 (850)
Q Consensus 582 ~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~ 636 (850)
+.++.++.-.+. ...-+-|+|.+...+.+..+.+-..|+.||..+++.-
T Consensus 639 dsI~gvsi~VG~------rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ 687 (1431)
T KOG1240|consen 639 DSIVGVSIFVGW------RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG 687 (1431)
T ss_pred hhccceEEEEee------eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc
Confidence 999877643221 1123557899999999999999999999999998864
No 64
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.85 E-value=3.5e-05 Score=61.19 Aligned_cols=50 Identities=22% Similarity=0.256 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHH
Q 003081 171 WRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDK 221 (850)
Q Consensus 171 wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~ 221 (850)
|+||.+|+.+||.+.++ ..+.+.+|++++++.++..+.|.++.||.+|..
T Consensus 1 p~vR~~A~~aLg~l~~~-~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~ 50 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEG-CPELLQPYLPELLPALIPLLQDDDDSVRAAAAW 50 (55)
T ss_dssp HHHHHHHHHHHHCTTTT-THHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHH
T ss_pred CHHHHHHHHHHhhHhcc-cHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 89999999999996554 457799999999999999999999999998853
No 65
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.16 Score=60.03 Aligned_cols=447 Identities=13% Similarity=0.132 Sum_probs=210.7
Q ss_pred chHHHHHHHHhccch-hhhhhhhHHhhHHHHHHHh----hhh---hc-hhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHh
Q 003081 73 PDLIYKFMDLANYQV-SLNSKRGAAFGFSKIAKQA----GDA---LK-PHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSL 143 (850)
Q Consensus 73 p~lv~~fm~la~~~~-~w~sr~gAa~gl~~I~~~~----~~~---l~-p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~L 143 (850)
+..--.++++..+.. +.+.|-+|+..|-+-+++- ++. +- .--.++-.-++..+....+.++.-..++...+
T Consensus 36 ~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~I 115 (960)
T KOG1992|consen 36 QNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLI 115 (960)
T ss_pred CCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 333445556553332 3566666667776655521 111 10 00112222233345666678888877777666
Q ss_pred ccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCch--------hh---hHHHHHHHHHHHHHhc---
Q 003081 144 VADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFD--------QV---GKHLRRIWTAAFRAMD--- 209 (850)
Q Consensus 144 v~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~--------~l---~~~L~~i~~~l~~~ld--- 209 (850)
... ..++-++.++++|.+.+++.+..+-.++...-..+...-.++ ++ ...+.+-++.+|+...
T Consensus 116 g~~---DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~ 192 (960)
T KOG1992|consen 116 GKR---DFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELI 192 (960)
T ss_pred hcc---ccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Confidence 521 356678999999999999887777666655444455421110 11 1111122222333221
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHhhhcccC-----cchhHHhHHHHhHHHHhh------ccCCCc------hhHHHHHHH
Q 003081 210 DIKETVRTAGDKLCRSVTSLTIRLCDVTLT-----EISDARQSMDIVLPFLLA------EGILSK------VDSISKASI 272 (850)
Q Consensus 210 D~k~~VR~aA~~~~~~L~~~~~r~~~~~~~-----~~~~~~~~l~~lLP~Ll~------~gL~s~------~~evr~~a~ 272 (850)
+.++. .++ .++.+-..++-.|.-.+. -++.....++.-|+.... ..+.++ ..++|...|
T Consensus 193 ~~~~~--~~~--~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~IC 268 (960)
T KOG1992|consen 193 QRHAN--DAA--ALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQIC 268 (960)
T ss_pred hhccc--chh--HHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHH
Confidence 00110 011 112121111111111110 122222223333333221 112222 345777778
Q ss_pred HHHHHHHHhcCcccccchHHHHHHHHHhccccchhhh-hHHHHhhhhc--ccch-hhhHHHHHhhccCCcHHHHHHHH--
Q 003081 273 GVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGL-NYIELHAANA--GIQT-EKLENLRISIAKGSPMWDTLDLC-- 346 (850)
Q Consensus 273 ~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~-nyl~~~a~~~--~~~~-d~id~~r~~~~~~s~l~eal~~~-- 346 (850)
+.+.--+.+..+.+.||+|+.+...-.+|.+..|+.. .|+..++-.+ ++.+ ..-.+. ....+.+...++.+
T Consensus 269 Ei~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~---F~~~~vl~~i~e~Vvl 345 (960)
T KOG1992|consen 269 EIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAEL---FEGENVLAQICEKVVL 345 (960)
T ss_pred HHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhh---hcchHHHHHHHHhhcc
Confidence 8777777788899999999999888887776555421 2222111000 0000 000000 00111122222321
Q ss_pred ----HhhcChhhHhh-HHHHHHHHHhccCCCchH-hhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHH
Q 003081 347 ----INVVDTESLDQ-LVPHLARLVRSGIGLNTR-VGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAF 420 (850)
Q Consensus 347 ----~~~ld~~~l~~-lvp~L~~~lk~~~~~~tr-~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~ 420 (850)
++.-|++.+++ -+-++-+.++.+ +..|| .+|+..+..|+.++...+.+..+..++.++.....+++..=++
T Consensus 346 pN~~lR~eDeElFED~pleYiRRDlEGs-DvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~-- 422 (960)
T KOG1992|consen 346 PNLILREEDEELFEDNPLEYIRRDLEGS-DVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKK-- 422 (960)
T ss_pred cccccchhhHHHhccCHHHHHHHhcccC-CcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccc--
Confidence 23334443333 333333344332 45554 5889999999999888887877777777777653333211110
Q ss_pred HHHHHHHhhhCCHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhh-------------chhhhhhhHhhHhHHHHHHh
Q 003081 421 ASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSV-------------ASDVLSGYHAVIVPVIFISR 487 (850)
Q Consensus 421 a~alg~L~~~~~~~~v~~li~~l~~~~~~d~~~r~~~~~~l~al~~~-------------~~~~f~~~~~~vlP~l~~~~ 487 (850)
+..+..++.+++.. .-+.-.-+..+++|-+...-
T Consensus 423 ---------------------------------kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~ 469 (960)
T KOG1992|consen 423 ---------------------------------KDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPN 469 (960)
T ss_pred ---------------------------------cchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCc
Confidence 11111111222110 01111223345556543211
Q ss_pred cCCchHHHHHHHHHHHHhcCCChhhH-HhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCc---------chhhh
Q 003081 488 FEDDKYVSDLFEELWEENTSGDRVTL-QLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGE---------SLSNY 557 (850)
Q Consensus 488 ~d~~~~v~~~~~~v~~~l~~~~~~~i-~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~---------~l~~~ 557 (850)
....+-++.-..+-. . -.+..+ +.++-.+++.+...|.+++.-|...||.++..+-...+. .+.|+
T Consensus 470 vn~~pilka~aIKy~---~-~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~ 545 (960)
T KOG1992|consen 470 VNEFPILKADAIKYI---Y-TFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPF 545 (960)
T ss_pred cccccchhhccccee---e-eecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchH
Confidence 111111111100000 0 000111 345666778888889999999999999999988765443 34555
Q ss_pred HHHHHHHHHHhc
Q 003081 558 HHVLLESIMKEV 569 (850)
Q Consensus 558 l~~llp~L~~~L 569 (850)
...++.-|.+++
T Consensus 546 ~~~ll~nLf~a~ 557 (960)
T KOG1992|consen 546 VEILLTNLFKAL 557 (960)
T ss_pred HHHHHHHHHHhc
Confidence 666666666666
No 66
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.72 E-value=2.3e-05 Score=62.25 Aligned_cols=54 Identities=28% Similarity=0.440 Sum_probs=49.7
Q ss_pred hhhhhhHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHH
Q 003081 89 LNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKS 142 (850)
Q Consensus 89 w~sr~gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~ 142 (850)
|.-|++|+.+||.+.+.+++.+.|++++++|.|...+.|+++.||.+++.+.+.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 778999999999998888999999999999999999999999999999876653
No 67
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.19 Score=58.57 Aligned_cols=314 Identities=12% Similarity=0.125 Sum_probs=160.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHH
Q 003081 199 RIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKL 278 (850)
Q Consensus 199 ~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~l 278 (850)
++-.-+|.+|...++-||+-|..+ +-++++++-+ .+....|-|.+ .|.++++-|+..|..++.++
T Consensus 144 DLa~Dv~tLL~sskpYvRKkAIl~---lykvFLkYPe-----------Alr~~FprL~E-kLeDpDp~V~SAAV~VICEL 208 (877)
T KOG1059|consen 144 DLADDVFTLLNSSKPYVRKKAILL---LYKVFLKYPE-----------ALRPCFPRLVE-KLEDPDPSVVSAAVSVICEL 208 (877)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHH---HHHHHHhhhH-----------hHhhhHHHHHH-hccCCCchHHHHHHHHHHHH
Confidence 555667788999999999977533 3344454432 45667888775 48889999999999999999
Q ss_pred HHhcCcccccchHHHHHHHHHhc---------------cccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHH
Q 003081 279 VKGAGIAIRPHLSDLVSCMLESL---------------SSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTL 343 (850)
Q Consensus 279 a~~~g~~l~P~lp~Lvp~LL~~L---------------s~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal 343 (850)
|+..++..-|..|.+...+...- .-.||-. ++- + -+.+-++=-+.+..|-++|.+
T Consensus 209 ArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRL--------gKK-L-ieplt~li~sT~AmSLlYECv 278 (877)
T KOG1059|consen 209 ARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRL--------GKK-L-IEPITELMESTVAMSLLYECV 278 (877)
T ss_pred HhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchh--------hhh-h-hhHHHHHHHhhHHHHHHHHHH
Confidence 99988876666665544333211 1122211 100 0 011111100111122334444
Q ss_pred HHHHhh-----c-Ch-hhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHH
Q 003081 344 DLCINV-----V-DT-ESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAA 416 (850)
Q Consensus 344 ~~~~~~-----l-d~-~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~V 416 (850)
+.++.. . |. ....--+.+|-..+.++ +.+-|--.+-++..+...++..+..|-+ .+++++ +|..++|
T Consensus 279 NTVVa~s~s~g~~d~~asiqLCvqKLr~fieds-DqNLKYlgLlam~KI~ktHp~~Vqa~kd----lIlrcL-~DkD~SI 352 (877)
T KOG1059|consen 279 NTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDS-DQNLKYLGLLAMSKILKTHPKAVQAHKD----LILRCL-DDKDESI 352 (877)
T ss_pred HHheeehhccCCCCcHHHHHHHHHHHhhhhhcC-CccHHHHHHHHHHHHhhhCHHHHHHhHH----HHHHHh-ccCCchh
Confidence 443322 0 11 11222344444444443 4455554555555555555555555544 455666 7999999
Q ss_pred HHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhc--CCchhhHHHHHHHHHHHhhc----hhhhhhhHhhHhHHHHHHhcCC
Q 003081 417 KRAFASACASVLKYATPSQAQKLIEETAALHI--DDKNSQISCAILLKSYSSVA----SDVLSGYHAVIVPVIFISRFED 490 (850)
Q Consensus 417 r~~~a~alg~L~~~~~~~~v~~li~~l~~~~~--~d~~~r~~~~~~l~al~~~~----~~~f~~~~~~vlP~l~~~~~d~ 490 (850)
|-.+ +.-+....+.+.+..++..|+.-.. +...+|.....-+-.++..+ --.|.-|...++.+.-..-.+
T Consensus 353 RlrA---LdLl~gmVskkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~- 428 (877)
T KOG1059|consen 353 RLRA---LDLLYGMVSKKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEGTR- 428 (877)
T ss_pred HHHH---HHHHHHHhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccc-
Confidence 9554 4444444455556666666655442 33456644433333333322 235677777666554321111
Q ss_pred chHHHHHHHHHHHHhcCCChhhHHhhHH-HHHHHHHHh------hc-CCCHHHHHHHHHHHHHHHHHhC
Q 003081 491 DKYVSDLFEELWEENTSGDRVTLQLYLG-EIVSLICEG------IA-SSSWSSKRKSAKAICKLGEILG 551 (850)
Q Consensus 491 ~~~v~~~~~~v~~~l~~~~~~~i~~yl~-eIl~ll~~~------L~-d~s~~vr~~aa~alg~la~~~g 551 (850)
.-....+.+.+++-.. ..+|++.= .+..++... .. +.=.+|-.+|+-++|..+....
T Consensus 429 ---~G~~I~eQi~Dv~iRV-~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ve 493 (877)
T KOG1059|consen 429 ---HGSLIAEQIIDVAIRV-PSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVE 493 (877)
T ss_pred ---hhhHHHHHHHHHheec-hhhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhh
Confidence 1111222222332222 23555543 233333311 11 1124677788888888887554
No 68
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.13 Score=59.97 Aligned_cols=237 Identities=22% Similarity=0.286 Sum_probs=135.9
Q ss_pred hHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhc-cCChHHHH
Q 003081 74 DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLV-ADPKRTID 152 (850)
Q Consensus 74 ~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv-~d~~~~i~ 152 (850)
||....|.|.+|+. ..-|+-|...+..++.+..+.++|-.+++..+| -||+|.|+.|+.+++=-|+ ++|+.-+.
T Consensus 144 DLa~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr~~FprL~EkL----eDpDp~V~SAAV~VICELArKnPknyL~ 218 (877)
T KOG1059|consen 144 DLADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALRPCFPRLVEKL----EDPDPSVVSAAVSVICELARKNPQNYLQ 218 (877)
T ss_pred HHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhc----cCCCchHHHHHHHHHHHHHhhCCccccc
Confidence 67888899998885 567888888999999999999999877777776 9999999999877554455 45542111
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHH-HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHH
Q 003081 153 EHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLR-RIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTI 231 (850)
Q Consensus 153 ~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~-~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~ 231 (850)
+.+++=.|+... +++|-.-.- ..-|+.|. .++|.|. .+++.+..+|. +..|.+++....+..+
T Consensus 219 --LAP~ffkllttS-sNNWmLIKi-iKLF~aLt------plEPRLgKKLieplt~li~------sT~AmSLlYECvNTVV 282 (877)
T KOG1059|consen 219 --LAPLFYKLLVTS-SNNWVLIKL-LKLFAALT------PLEPRLGKKLIEPITELME------STVAMSLLYECVNTVV 282 (877)
T ss_pred --ccHHHHHHHhcc-CCCeehHHH-HHHHhhcc------ccCchhhhhhhhHHHHHHH------hhHHHHHHHHHHHHhe
Confidence 122222233333 457864321 22233332 2333221 33444444433 3345555544433332
Q ss_pred HhhhcccCcchhHHhHHHHhHHHHhhcc-CCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhh
Q 003081 232 RLCDVTLTEISDARQSMDIVLPFLLAEG-ILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLN 310 (850)
Q Consensus 232 r~~~~~~~~~~~~~~~l~~lLP~Ll~~g-L~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~n 310 (850)
.. .-..|.+ +..+.....+.-| ++ +.++++.+|-.++.++.+|.+.....+..|-.-+ +..|++.+
T Consensus 283 a~-s~s~g~~-d~~asiqLCvqKL--r~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlI----lrcL~DkD----- 349 (877)
T KOG1059|consen 283 AV-SMSSGMS-DHSASIQLCVQKL--RIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLI----LRCLDDKD----- 349 (877)
T ss_pred ee-hhccCCC-CcHHHHHHHHHHH--hhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHH----HHHhccCC-----
Confidence 22 1111211 1112223233322 12 3457788999999999999887776655554332 33333221
Q ss_pred HHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhcc
Q 003081 311 YIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSG 369 (850)
Q Consensus 311 yl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~ 369 (850)
+..|+ .|++-+...++.+++.+++-.|...+-.+
T Consensus 350 ----------------~SIRl---------rALdLl~gmVskkNl~eIVk~LM~~~~~a 383 (877)
T KOG1059|consen 350 ----------------ESIRL---------RALDLLYGMVSKKNLMEIVKTLMKHVEKA 383 (877)
T ss_pred ----------------chhHH---------HHHHHHHHHhhhhhHHHHHHHHHHHHHhc
Confidence 23342 35666667777788888888777666544
No 69
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=97.63 E-value=0.47 Score=63.72 Aligned_cols=123 Identities=17% Similarity=0.227 Sum_probs=89.5
Q ss_pred CCChhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCC-hhhHHHHHHHHH
Q 003081 507 SGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRL-WEGKDALLYAIG 585 (850)
Q Consensus 507 ~~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~-~~gKe~vL~aL~ 585 (850)
.+....+.+|++.++..+...+.+++..+-+++..+++.||...|..+..+...+++.+.+.+.+.. ..-+...+.+++
T Consensus 636 ~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~ 715 (2341)
T KOG0891|consen 636 ISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALG 715 (2341)
T ss_pred HHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhh
Confidence 3334457899999998888888999889999999999999999998777777888888888887654 445788999999
Q ss_pred HHHHhcccccccCCCCchHHHHHHHHHHHh-hcCHHHHHHHHHHHHH
Q 003081 586 SISTSCHKDISAEDPTTPFAIVDMVSSACR-KKIKKYREAAFSCLEQ 631 (850)
Q Consensus 586 ~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~-r~~~~~R~~Al~~Lg~ 631 (850)
.+....+...... ...|.+...+....+ ......|++++..+|.
T Consensus 716 ~l~s~~~~~v~p~--~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~ 760 (2341)
T KOG0891|consen 716 QLESSTGYVVDPY--LDYPELLDILINILKTEQSSTIRREAIRLLGL 760 (2341)
T ss_pred hhhcccceEeccc--ccChHHHHHHHHHHhHhhhhHHHHHHHHHhhh
Confidence 9987666543321 112333333333322 2456789999988884
No 70
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.63 E-value=0.00032 Score=82.71 Aligned_cols=129 Identities=19% Similarity=0.196 Sum_probs=111.5
Q ss_pred hHHhhHHHHHHHh-hhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCC--
Q 003081 94 GAAFGFSKIAKQA-GDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRL-- 170 (850)
Q Consensus 94 gAa~gl~~I~~~~-~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~-- 170 (850)
--..||+.++... ...+-|.++.++|-|+....=|++.||-+..+++..+.......+.+|++.++|.++.--.|++
T Consensus 886 ~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~ 965 (1030)
T KOG1967|consen 886 NYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNN 965 (1030)
T ss_pred HHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcc
Confidence 3446777777654 3567799999999999999999999999999999888866666789999999999998766655
Q ss_pred -hhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHH
Q 003081 171 -WRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKL 222 (850)
Q Consensus 171 -wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~ 222 (850)
--||+.|...++.|.+-.|...+.+|-++.+..+.+.+||.|.-||+.|..+
T Consensus 966 ~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 966 MMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred hhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 5789999999999999888888999999999999999999999999988643
No 71
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.0079 Score=64.40 Aligned_cols=407 Identities=15% Similarity=0.089 Sum_probs=202.9
Q ss_pred hhhhhhHHhhHHHHHHHh-----hhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChH--HHHH--HHHHHH
Q 003081 89 LNSKRGAAFGFSKIAKQA-----GDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKR--TIDE--HLDLIF 159 (850)
Q Consensus 89 w~sr~gAa~gl~~I~~~~-----~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~--~i~~--~~~~Il 159 (850)
.+-.+.|+.+|.-|.++. ++..+| +- .....|.+.++.+++...+-++-+... .+-+ -++.+
T Consensus 61 lnlqrsaalafAeitek~vr~Vsres~ep-----vl---~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~L- 131 (550)
T KOG4224|consen 61 LNLQRSAALAFAEITEKGVRRVSRESNEP-----VL---ALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLL- 131 (550)
T ss_pred cccchHHHHHHHHHHHHHHHHhhhhhhhH-----HH---HHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHH-
Confidence 455677888888777654 233333 22 235889999999999888766644311 1111 01222
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 003081 160 DDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLT 239 (850)
Q Consensus 160 ~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~ 239 (850)
+++.++| .-.||..+.-.+-+|..-.+...=..+... +..+.|+-.-.+..||.-+..++-.+... .+
T Consensus 132 --i~qmmtd-~vevqcnaVgCitnLaT~d~nk~kiA~sGa-L~pltrLakskdirvqrnatgaLlnmThs----~E---- 199 (550)
T KOG4224|consen 132 --ILQMMTD-GVEVQCNAVGCITNLATFDSNKVKIARSGA-LEPLTRLAKSKDIRVQRNATGALLNMTHS----RE---- 199 (550)
T ss_pred --HHHhcCC-CcEEEeeehhhhhhhhccccchhhhhhccc-hhhhHhhcccchhhHHHHHHHHHHHhhhh----hh----
Confidence 3344444 445554444444444431110000011111 12233433333335666555443333210 00
Q ss_pred cchhHHhH-HHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHh--cCcccccchHHHHHHHHHhccccchhhhhHHHHhh
Q 003081 240 EISDARQS-MDIVLPFLLAEGILSKVDSISKASIGVVMKLVKG--AGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHA 316 (850)
Q Consensus 240 ~~~~~~~~-l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~--~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a 316 (850)
.-+.. -.--+|+|.+ -+.+.+.++|.+++.+++.|+-. ..+.+..-=|.++|.|.+++.+..|.+. +....+
T Consensus 200 ---nRr~LV~aG~lpvLVs-ll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvk-cqA~lA 274 (550)
T KOG4224|consen 200 ---NRRVLVHAGGLPVLVS-LLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVK-CQAGLA 274 (550)
T ss_pred ---hhhhhhccCCchhhhh-hhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHH-HHHHHH
Confidence 01111 1235888874 35567889999999999999754 4566777778999999999987665442 221111
Q ss_pred hhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchH---hhHHHHHHHHHHHhcccc
Q 003081 317 ANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTR---VGVASFISLLVQKIGMDI 393 (850)
Q Consensus 317 ~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~tr---~~a~~~l~~L~~~~~~~~ 393 (850)
+|.-+..+.|..+.. -..-+|.+.++++++.+ |.- ++|.+- +..+-+...
T Consensus 275 ------------Lrnlasdt~Yq~eiv-----------~ag~lP~lv~Llqs~~~-plilasVaCIrn---isihplNe~ 327 (550)
T KOG4224|consen 275 ------------LRNLASDTEYQREIV-----------EAGSLPLLVELLQSPMG-PLILASVACIRN---ISIHPLNEV 327 (550)
T ss_pred ------------HhhhcccchhhhHHH-----------hcCCchHHHHHHhCcch-hHHHHHHHHHhh---cccccCccc
Confidence 111111222221111 11236888888887643 211 223322 333333222
Q ss_pred cchHH-HHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHHH-----HHHHHHHHhhcCCc---hhhHHHHHHHHHH
Q 003081 394 KPYTS-MLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQ-----KLIEETAALHIDDK---NSQISCAILLKSY 464 (850)
Q Consensus 394 ~py~~-~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~-----~li~~l~~~~~~d~---~~r~~~~~~l~al 464 (850)
+..+ .|++.++..|....|+.+.-.+.+.+-.+.... +..+. .-++++.++..+-+ ..+.+++.+..++
T Consensus 328 -lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAass-e~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal 405 (550)
T KOG4224|consen 328 -LIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS-EHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLAL 405 (550)
T ss_pred -ceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh-hhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence 3333 367777777744567767666555655554311 11111 12455665554322 3356666666666
Q ss_pred HhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChh------hHHhhHHHHHHHHHHhhcCCCHHHHHH
Q 003081 465 SSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRV------TLQLYLGEIVSLICEGIASSSWSSKRK 538 (850)
Q Consensus 465 ~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~------~i~~yl~eIl~ll~~~L~d~s~~vr~~ 538 (850)
.......|.. .-++|++.--..+..++|+......+..+++.... ....-.+.|-..+.+.+.+....+|+.
T Consensus 406 ~d~~k~~lld--~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hi 483 (550)
T KOG4224|consen 406 NDNDKEALLD--SGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHI 483 (550)
T ss_pred ccccHHHHhh--cCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHH
Confidence 4443333321 12334433223344455554444443333322110 000001334555666677777888888
Q ss_pred HHHHHHHHHHHhCc
Q 003081 539 SAKAICKLGEILGE 552 (850)
Q Consensus 539 aa~alg~la~~~g~ 552 (850)
+.-++-.+......
T Consensus 484 a~wTI~qLle~h~~ 497 (550)
T KOG4224|consen 484 ARWTIQQLLEDHDL 497 (550)
T ss_pred HHHHHHHHHHhCCc
Confidence 88888888875443
No 72
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.011 Score=63.21 Aligned_cols=355 Identities=12% Similarity=0.078 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHH
Q 003081 152 DEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTI 231 (850)
Q Consensus 152 ~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~ 231 (850)
.+.-+.....++..+.+....+..++|.|+|+|.-...-.-+.-.|.-+=+.+...|.|.. .||--+..-++.|+..
T Consensus 80 r~Vsres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~v-evqcnaVgCitnLaT~-- 156 (550)
T KOG4224|consen 80 RRVSRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGV-EVQCNAVGCITNLATF-- 156 (550)
T ss_pred HHhhhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCc-EEEeeehhhhhhhhcc--
Confidence 3334566777788888889999999999999986533222222222222223344566653 3444444444544422
Q ss_pred HhhhcccCcchhHHhHHHHhHHHHhhccCC-CchhHHHHHHHHHHHHHHHhcC--cccccchHHHHHHHHHhccccchhh
Q 003081 232 RLCDVTLTEISDARQSMDIVLPFLLAEGIL-SKVDSISKASIGVVMKLVKGAG--IAIRPHLSDLVSCMLESLSSLEDQG 308 (850)
Q Consensus 232 r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~-s~~~evr~~a~~~L~~la~~~g--~~l~P~lp~Lvp~LL~~Ls~~ep~~ 308 (850)
+.... .-.-...+.|.. + +. +..-.+|..+..++.++...-. ..+.. ..-+|.|..++++.++.+
T Consensus 157 ---d~nk~----kiA~sGaL~plt--r-LakskdirvqrnatgaLlnmThs~EnRr~LV~--aG~lpvLVsll~s~d~dv 224 (550)
T KOG4224|consen 157 ---DSNKV----KIARSGALEPLT--R-LAKSKDIRVQRNATGALLNMTHSRENRRVLVH--AGGLPVLVSLLKSGDLDV 224 (550)
T ss_pred ---ccchh----hhhhccchhhhH--h-hcccchhhHHHHHHHHHHHhhhhhhhhhhhhc--cCCchhhhhhhccCChhH
Confidence 21110 111223344432 2 32 3556788899999988865421 11100 122577888888877766
Q ss_pred hhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHH
Q 003081 309 LNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQK 388 (850)
Q Consensus 309 ~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~ 388 (850)
.-|.+...++.+++ . ..|. .+ .+.=++++|.|+++++++ ....|+.+...+..|+..
T Consensus 225 qyycttaisnIaVd--~--~~Rk--------------~L----aqaep~lv~~Lv~Lmd~~-s~kvkcqA~lALrnlasd 281 (550)
T KOG4224|consen 225 QYYCTTAISNIAVD--R--RARK--------------IL----AQAEPKLVPALVDLMDDG-SDKVKCQAGLALRNLASD 281 (550)
T ss_pred HHHHHHHhhhhhhh--H--HHHH--------------HH----HhcccchHHHHHHHHhCC-ChHHHHHHHHHHhhhccc
Confidence 44443333332221 0 1111 11 111257999999999886 344566666666666544
Q ss_pred hcccccchHH-HHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCH-HH---HHHHHHHHHHhhc--CCchhhHHHHHHH
Q 003081 389 IGMDIKPYTS-MLLRLLFPVVKEEKSAAAKRAFASACASVLKYATP-SQ---AQKLIEETAALHI--DDKNSQISCAILL 461 (850)
Q Consensus 389 ~~~~~~py~~-~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~-~~---v~~li~~l~~~~~--~d~~~r~~~~~~l 461 (850)
..... |..+ .-++.++..+.++--+.|-...+ ++..+ .+.+- +. -..++.++...+. ++++.+-.+..++
T Consensus 282 t~Yq~-eiv~ag~lP~lv~Llqs~~~plilasVa-CIrni-sihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstL 358 (550)
T KOG4224|consen 282 TEYQR-EIVEAGSLPLLVELLQSPMGPLILASVA-CIRNI-SIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTL 358 (550)
T ss_pred chhhh-HHHhcCCchHHHHHHhCcchhHHHHHHH-HHhhc-ccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHH
Confidence 33211 2211 23445555552222333432221 22111 11111 10 1235566666664 3444566666677
Q ss_pred HHHHhhchhhhhhhH-hhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhH--HHHHHHHHHhhcCCCHHHHHH
Q 003081 462 KSYSSVASDVLSGYH-AVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYL--GEIVSLICEGIASSSWSSKRK 538 (850)
Q Consensus 462 ~al~~~~~~~f~~~~-~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl--~eIl~ll~~~L~d~s~~vr~~ 538 (850)
..++..+....+.+. .-.+|.+.-..-|..-++++-....+..+.-+ ...+.|+ ..|++.+.....|.+.++|-.
T Consensus 359 rnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gN 436 (550)
T KOG4224|consen 359 RNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN--DNDKEALLDSGIIPILIPWTGSESEEVRGN 436 (550)
T ss_pred HHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc--cccHHHHhhcCCcceeecccCccchhhccc
Confidence 766543221111111 12234333223343334554444444333322 1223343 337788888888999999999
Q ss_pred HHHHHHHHHHH
Q 003081 539 SAKAICKLGEI 549 (850)
Q Consensus 539 aa~alg~la~~ 549 (850)
||.+++.+++.
T Consensus 437 aAaAL~Nlss~ 447 (550)
T KOG4224|consen 437 AAAALINLSSD 447 (550)
T ss_pred HHHHHHhhhhh
Confidence 99999988864
No 73
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.01 Score=68.03 Aligned_cols=314 Identities=13% Similarity=0.095 Sum_probs=166.3
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcc
Q 003081 158 IFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVT 237 (850)
Q Consensus 158 Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~ 237 (850)
....|..-.++++.|||.+|..|+-.|-+|...++ .+.+.+.+.|.|..+.||.+|.++.+..++.+.--.+..
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~------~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e 272 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSK------ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERE 272 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhcccccccH------HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence 34446666789999999999999888877544332 345566778899999999999999998887653111111
Q ss_pred cCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhh
Q 003081 238 LTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAA 317 (850)
Q Consensus 238 ~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~ 317 (850)
.. -..+.....--+= .++.+-+..||-.+...+|.+-.... +++. +..+
T Consensus 273 ~~----e~kl~D~aF~~vC-~~v~D~sl~VRV~AaK~lG~~~~vSe--------e~i~------------------QTLd 321 (823)
T KOG2259|consen 273 SE----EEKLKDAAFSSVC-RAVRDRSLSVRVEAAKALGEFEQVSE--------EIIQ------------------QTLD 321 (823)
T ss_pred hh----hhhhHHHHHHHHH-HHHhcCceeeeehHHHHhchHHHhHH--------HHHH------------------HHHH
Confidence 00 1112222222111 34556667777777777776521111 1111 1111
Q ss_pred hcccchhhhHHHHH-hhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCch-HhhHHHHHHHHHHHhcccccc
Q 003081 318 NAGIQTEKLENLRI-SIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNT-RVGVASFISLLVQKIGMDIKP 395 (850)
Q Consensus 318 ~~~~~~d~id~~r~-~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~t-r~~a~~~l~~L~~~~~~~~~p 395 (850)
+ ..+...|- ..++.- |. .+-+..+|.+ |.-.+.+=..=.-.-...+-|
T Consensus 322 K-----Klms~lRRkr~ahkr----------------------pk---~l~s~GewSsGk~~~advpsee~d~~~~siI~ 371 (823)
T KOG2259|consen 322 K-----KLMSRLRRKRTAHKR----------------------PK---ALYSSGEWSSGKEWNADVPSEEDDEEEESIIP 371 (823)
T ss_pred H-----HHhhhhhhhhhcccc----------------------hH---HHHhcCCcccCccccccCchhhcccccccccc
Confidence 1 00000100 000000 00 0000001110 000000000000000001111
Q ss_pred hHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhcC-CchhhHHHHHHHHHHHhhchhhhhh
Q 003081 396 YTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHID-DKNSQISCAILLKSYSSVASDVLSG 474 (850)
Q Consensus 396 y~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~~-d~~~r~~~~~~l~al~~~~~~~f~~ 474 (850)
+ .--.+++.++ .|.-..||+++..+++.|.-..|. -..+-++.+.+++.+ .++.|..+..++..|+.+. .
T Consensus 372 s--GACGA~VhGl-EDEf~EVR~AAV~Sl~~La~ssP~-FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l-----~ 442 (823)
T KOG2259|consen 372 S--GACGALVHGL-EDEFYEVRRAAVASLCSLATSSPG-FAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHL-----A 442 (823)
T ss_pred c--cccceeeeec-hHHHHHHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh-----e
Confidence 1 0012345566 678889999999999998754443 344556778888763 3567999998888887652 3
Q ss_pred hHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCc
Q 003081 475 YHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGE 552 (850)
Q Consensus 475 ~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~ 552 (850)
.....++.++....|..+++|+...+++.-.--.....+..-+.+++.-+..+-+|.+ ....|++.+.++-+.
T Consensus 443 i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L~kyPqDrd-----~i~~cm~~iGqnH~~ 515 (823)
T KOG2259|consen 443 IREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDMCVAHLLKNLGKYPQDRD-----EILRCMGRIGQNHRR 515 (823)
T ss_pred ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhCCCCcH-----HHHHHHHHHhccChh
Confidence 3444566666667788888998888777542222223444555666666666555533 445677777766544
No 74
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.067 Score=62.49 Aligned_cols=344 Identities=11% Similarity=0.145 Sum_probs=193.5
Q ss_pred hccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccc
Q 003081 208 MDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIR 287 (850)
Q Consensus 208 ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~ 287 (850)
++++++-||....+.+..| . -.+++..++|.+.+ .++...+=||..|+-++..|-+. +..|-
T Consensus 108 LQHPNEyiRG~TLRFLckL--------k--------E~ELlepl~p~Ira-cleHrhsYVRrNAilaifsIyk~-~~~L~ 169 (948)
T KOG1058|consen 108 LQHPNEYIRGSTLRFLCKL--------K--------EPELLEPLMPSIRA-CLEHRHSYVRRNAILAIFSIYKN-FEHLI 169 (948)
T ss_pred ccCchHhhcchhhhhhhhc--------C--------cHHHhhhhHHHHHH-HHhCcchhhhhhhheeehhHHhh-hhhhc
Confidence 4567777777654322222 1 34688999999874 68888899999999999999887 66778
Q ss_pred cchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHH---HHHhhcChhhHhh-HHHHHH
Q 003081 288 PHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLD---LCINVVDTESLDQ-LVPHLA 363 (850)
Q Consensus 288 P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~---~~~~~ld~~~l~~-lvp~L~ 363 (850)
|-.|+|+..+|..=.+..=-.-.|+..... |.- .|+. .|+..+. .+.. +--.++
T Consensus 170 pDapeLi~~fL~~e~DpsCkRNAFi~L~~~---------D~E-----------rAl~Yl~~~idqi~--~~~~~LqlViV 227 (948)
T KOG1058|consen 170 PDAPELIESFLLTEQDPSCKRNAFLMLFTT---------DPE-----------RALNYLLSNIDQIP--SFNDSLQLVIV 227 (948)
T ss_pred CChHHHHHHHHHhccCchhHHHHHHHHHhc---------CHH-----------HHHHHHHhhHhhcc--CccHHHHHHHH
Confidence 899999988886533211000001111000 000 0111 1111110 0000 111111
Q ss_pred HHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHH-HHHHHHH
Q 003081 364 RLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQ-AQKLIEE 442 (850)
Q Consensus 364 ~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~-v~~li~~ 442 (850)
+ +|-..+.+.+. --.++++.++..| +..++.|+=+ |.|.++...+++. +..-...
T Consensus 228 E----------------~Irkv~~~~p~----~~~~~i~~i~~lL-~stssaV~fE---aa~tlv~lS~~p~alk~Aa~~ 283 (948)
T KOG1058|consen 228 E----------------LIRKVCLANPA----EKARYIRCIYNLL-SSTSSAVIFE---AAGTLVTLSNDPTALKAAAST 283 (948)
T ss_pred H----------------HHHHHHhcCHH----HhhHHHHHHHHHH-hcCCchhhhh---hcceEEEccCCHHHHHHHHHH
Confidence 1 12111211111 1235677777777 4456666533 4455555555443 3333333
Q ss_pred HHHhhc--CCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHH
Q 003081 443 TAALHI--DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEI 520 (850)
Q Consensus 443 l~~~~~--~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eI 520 (850)
++++.. .|.+.+....+-+..+.......|..+.-.+++++ ..++-+||....++--+++.+ ....+|
T Consensus 284 ~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvL----ss~dldvr~Ktldi~ldLvss------rNvedi 353 (948)
T KOG1058|consen 284 YIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVL----SSPDLDVRSKTLDIALDLVSS------RNVEDI 353 (948)
T ss_pred HHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHc----CcccccHHHHHHHHHHhhhhh------ccHHHH
Confidence 444442 35566666666677776555666777766677664 334556877666665455543 234455
Q ss_pred HHHHHHhhc-------CCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhccc
Q 003081 521 VSLICEGIA-------SSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHK 593 (850)
Q Consensus 521 l~ll~~~L~-------d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~ 593 (850)
++++.+-+. +.+-.-|+.-.+++..++..++ .+...++|.|++-+.+.....-..+|..+.....+.
T Consensus 354 v~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp----~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~-- 427 (948)
T KOG1058|consen 354 VQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP----EVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKF-- 427 (948)
T ss_pred HHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCh----HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhC--
Confidence 555554432 2344568877788887777654 345778899999887766555555665555555433
Q ss_pred ccccCCCCchHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHcC
Q 003081 594 DISAEDPTTPFAIVDMVSSACRK-KIKKYREAAFSCLEQVIKAFR 637 (850)
Q Consensus 594 ~l~~~~~~~~~~i~~~l~~e~~r-~~~~~R~~Al~~Lg~l~~~~~ 637 (850)
+.....|+..++..... +..++-+.|+|-+|.++....
T Consensus 428 ------p~Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 428 ------PNLRASIIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred ------chHHHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 23445555555544332 456677889999999998764
No 75
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.47 E-value=0.00044 Score=60.37 Aligned_cols=84 Identities=24% Similarity=0.191 Sum_probs=61.7
Q ss_pred HHHHHhhc-CCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHH
Q 003081 118 IPKLVRFQ-YDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKH 196 (850)
Q Consensus 118 vp~L~r~~-~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~ 196 (850)
||.|++.+ .||++.||..+..+...+- -+..++.|...+.|++|.||.+++.|++.+=
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------
Confidence 57788877 9999999999888666331 1255777777889999999999999999861
Q ss_pred HHHHHHHHHHHhc-cCcHHHHHHHHHH
Q 003081 197 LRRIWTAAFRAMD-DIKETVRTAGDKL 222 (850)
Q Consensus 197 L~~i~~~l~~~ld-D~k~~VR~aA~~~ 222 (850)
-++.++.+.+.+. |....||.+|..+
T Consensus 60 ~~~~~~~L~~~l~~~~~~~vr~~a~~a 86 (88)
T PF13646_consen 60 DPEAIPALIKLLQDDDDEVVREAAAEA 86 (88)
T ss_dssp HHHTHHHHHHHHTC-SSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHhh
Confidence 1345556666564 4667789887644
No 76
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.44 E-value=0.0054 Score=67.93 Aligned_cols=195 Identities=14% Similarity=0.089 Sum_probs=117.7
Q ss_pred HHHHHHHHhccCCCchHhhHHH-HHHHHHHHhcccccchHHHHHHHHHHhhhhc-CcHHHHHHHHHHHHHHhhhCCHHHH
Q 003081 359 VPHLARLVRSGIGLNTRVGVAS-FISLLVQKIGMDIKPYTSMLLRLLFPVVKEE-KSAAAKRAFASACASVLKYATPSQA 436 (850)
Q Consensus 359 vp~L~~~lk~~~~~~tr~~a~~-~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D-~n~~Vr~~~a~alg~L~~~~~~~~v 436 (850)
+-.++..++..-+...+-++.. +...++..--.-...|-++||-.++..+ .| .++.+++-+-+.++.+++.-+....
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL-~d~~~~~~k~laLrvL~~ml~~Q~~~l~ 366 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVL-SDSEDEIIKKLALRVLREMLTNQPARLF 366 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH-ccchhhHHHHHHHHHHHHHHHhchHhhh
Confidence 3333333433323334445544 3333332222234578889999999999 56 7788888888889888887654432
Q ss_pred HHH---HHHHHHhhc--CCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCCh-
Q 003081 437 QKL---IEETAALHI--DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDR- 510 (850)
Q Consensus 437 ~~l---i~~l~~~~~--~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~- 510 (850)
... +.++.+... .|+-.|.+.-+++.-++.+.|.. ....+.|+++. + |+...-+..+....++....
T Consensus 367 DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~---~I~~i~~~Ilt---~-D~~~~~~~iKm~Tkl~e~l~~ 439 (516)
T KOG2956|consen 367 DSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ---CIVNISPLILT---A-DEPRAVAVIKMLTKLFERLSA 439 (516)
T ss_pred chHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh---HHHHHhhHHhc---C-cchHHHHHHHHHHHHHhhcCH
Confidence 222 222222221 22233444445555556666552 34445566543 2 22222222233333333322
Q ss_pred hhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhC-cchhhhHHHH
Q 003081 511 VTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILG-ESLSNYHHVL 561 (850)
Q Consensus 511 ~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g-~~l~~~l~~l 561 (850)
..+.+.+++|.|.+.+..++++..||.+|.+||-++...+| ..+.||+.++
T Consensus 440 EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 440 EELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQL 491 (516)
T ss_pred HHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence 35678899999999999999999999999999999999999 8899988764
No 77
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.13 Score=60.80 Aligned_cols=126 Identities=10% Similarity=0.127 Sum_probs=79.9
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhccc
Q 003081 159 FDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTL 238 (850)
Q Consensus 159 l~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~ 238 (850)
+..++....|++|-+|.-|...++.+ ..+.+ ...++..+.+.++|..+-||.+|.-.+..+...-.+.+..
T Consensus 88 vnt~~kD~~d~np~iR~lAlrtm~~l----~v~~i---~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~-- 158 (734)
T KOG1061|consen 88 VNTFLKDCEDPNPLIRALALRTMGCL----RVDKI---TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVED-- 158 (734)
T ss_pred hhhhhccCCCCCHHHHHHHhhceeeE----eehHH---HHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccc--
Confidence 46667788899999997665443332 22333 3356667788899999999998764444443322222211
Q ss_pred CcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcC-cccccchHHHHHHHHHhcccc
Q 003081 239 TEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAG-IAIRPHLSDLVSCMLESLSSL 304 (850)
Q Consensus 239 ~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g-~~l~P~lp~Lvp~LL~~Ls~~ 304 (850)
.-+++.|- .-+.++++.|-..|+.++..|.+.-. ....-..++++..+++.+...
T Consensus 159 ----------~gl~~~L~-~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec 214 (734)
T KOG1061|consen 159 ----------SGLVDALK-DLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNEC 214 (734)
T ss_pred ----------cchhHHHH-HHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHh
Confidence 12333332 11335778999999999999998754 344555667888888888643
No 78
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.34 E-value=0.0042 Score=75.10 Aligned_cols=183 Identities=17% Similarity=0.164 Sum_probs=139.8
Q ss_pred chhhhhhhhHHhhHHHHHHHhh-hhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Q 003081 86 QVSLNSKRGAAFGFSKIAKQAG-DALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLI 164 (850)
Q Consensus 86 ~~~w~sr~gAa~gl~~I~~~~~-~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~ 164 (850)
+..|..|.-|.-++..+++..+ +.-.+|...+..-+-.-.+|.|-+|-.-+..+...+..........|...+++.++.
T Consensus 264 s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld 343 (815)
T KOG1820|consen 264 SKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLD 343 (815)
T ss_pred ccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHH
Confidence 3469999999999999998876 445556555555555567899999999999999999876665667778899999999
Q ss_pred hhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhH
Q 003081 165 QSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDA 244 (850)
Q Consensus 165 ~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~ 244 (850)
.+.++-..+|++...++..++...+ +..+.+.....+.+.++.+|..... +-.++++..++. ...
T Consensus 344 ~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~----~l~r~~~~~~~~----~~~ 408 (815)
T KOG1820|consen 344 RLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLL----LLDRKLRKLGPK----TVE 408 (815)
T ss_pred HhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHH----HHHHHHhhcCCc----Ccc
Confidence 9999999999999888888876443 4455555566788999999887433 333344444421 123
Q ss_pred HhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCc
Q 003081 245 RQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGI 284 (850)
Q Consensus 245 ~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~ 284 (850)
...++.+.|.++ ....|..++||..+..+++.+.+..|.
T Consensus 409 ~~t~~~l~p~~~-~~~~D~~~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 409 KETVKTLVPHLI-KHINDTDKDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred hhhHHHHhHHHh-hhccCCcHHHHHHHHHHHHHHHHHhhH
Confidence 457788999988 457788999999999999999998886
No 79
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.31 E-value=0.0033 Score=66.59 Aligned_cols=154 Identities=18% Similarity=0.236 Sum_probs=99.6
Q ss_pred hHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHH-HHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchh--
Q 003081 116 LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDL-IFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQ-- 192 (850)
Q Consensus 116 ~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~-Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~-- 192 (850)
+.+|.|....|--+|.|---+|=+...|+..+...+...++. +.+.|+..+++++-.+..-+..++|+++.|.....
T Consensus 243 qalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqv 322 (526)
T COG5064 243 QALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQV 322 (526)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceeh
Confidence 556666665555555554445555556666665556655554 66778888999999999999999999998765321
Q ss_pred hhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHH-HhHHHHhhccCCCchhHHHHHH
Q 003081 193 VGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMD-IVLPFLLAEGILSKVDSISKAS 271 (850)
Q Consensus 193 l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~-~lLP~Ll~~gL~s~~~evr~~a 271 (850)
+... -.++.+..++...|+.+|+.| ||++++++. |+....+.+++ .++|.|+. -+.+..--+|+.|
T Consensus 323 iI~~--G~L~a~~~lLs~~ke~irKEa---CWTiSNITA-------Gnteqiqavid~nliPpLi~-lls~ae~k~kKEA 389 (526)
T COG5064 323 IINC--GALKAFRSLLSSPKENIRKEA---CWTISNITA-------GNTEQIQAVIDANLIPPLIH-LLSSAEYKIKKEA 389 (526)
T ss_pred heec--ccHHHHHHHhcChhhhhhhhh---heeeccccc-------CCHHHHHHHHhcccchHHHH-HHHHHHHHHHHHH
Confidence 1111 122333345788889999975 899876542 33334444444 57888873 3444445688999
Q ss_pred HHHHHHHHHhc
Q 003081 272 IGVVMKLVKGA 282 (850)
Q Consensus 272 ~~~L~~la~~~ 282 (850)
|+++.+....+
T Consensus 390 CWAisNatsgg 400 (526)
T COG5064 390 CWAISNATSGG 400 (526)
T ss_pred HHHHHhhhccc
Confidence 99998875443
No 80
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.78 Score=55.69 Aligned_cols=519 Identities=14% Similarity=0.156 Sum_probs=268.4
Q ss_pred hHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCC------
Q 003081 116 LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRK------ 189 (850)
Q Consensus 116 ~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~------ 189 (850)
.|++.+.+- ...+|-....|.+.+...- -+++++.+++-+...+.+++--.-.++...+..|...-.
T Consensus 93 nIl~~iv~~----p~~iRvql~~~l~~Ii~~D---~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~ee 165 (1010)
T KOG1991|consen 93 NILETIVQV----PELIRVQLTACLNTIIKAD---YPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEE 165 (1010)
T ss_pred HHHHHHHhC----chHHHHHHHHHHHHHHhcC---CcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccc
Confidence 566666433 4567777777777766432 347888999999888988875555677777777776321
Q ss_pred ----chhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhc-----cC
Q 003081 190 ----FDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAE-----GI 260 (850)
Q Consensus 190 ----~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~-----gL 260 (850)
.+.+..++|.|.....+++.+.....-+-....++.+-..+--.+......+......+...+-.+ ++ ++
T Consensus 166 R~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~-~rpvP~E~l 244 (1010)
T KOG1991|consen 166 RQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSIL-NRPVPVEVL 244 (1010)
T ss_pred cccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHH-cCCCChhcc
Confidence 112455666666666666665544433322222222211111011111111112222333322222 12 11
Q ss_pred CC--------chhHHHHHHHHHHHHHHHhcCcc--------------cccchHHHHHHHHHhccc------cchhh----
Q 003081 261 LS--------KVDSISKASIGVVMKLVKGAGIA--------------IRPHLSDLVSCMLESLSS------LEDQG---- 308 (850)
Q Consensus 261 ~s--------~~~evr~~a~~~L~~la~~~g~~--------------l~P~lp~Lvp~LL~~Ls~------~ep~~---- 308 (850)
.- .-+-++++++..+.++..+.|+. +..|++.++..++..+.. ..|.+
T Consensus 245 ~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~ 324 (1010)
T KOG1991|consen 245 SLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYL 324 (1010)
T ss_pred cCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 11 12457889999999999987632 234566666666666542 23333
Q ss_pred hhHHHHhhhh------------------------ccc-chhhh-----HHHHHhh----ccCCcHHHH---HHHHHhhcC
Q 003081 309 LNYIELHAAN------------------------AGI-QTEKL-----ENLRISI----AKGSPMWDT---LDLCINVVD 351 (850)
Q Consensus 309 ~nyl~~~a~~------------------------~~~-~~d~i-----d~~r~~~----~~~s~l~ea---l~~~~~~ld 351 (850)
+||+...... ++. +++.+ +-.|... -..||-..| +-.++.--+
T Consensus 325 l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ 404 (1010)
T KOG1991|consen 325 LNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRG 404 (1010)
T ss_pred HHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcc
Confidence 3444432210 000 11222 2233221 122333222 234455566
Q ss_pred hhhHhhHHHHHHHHHhccCC-------CchHhhHHHHHHHHHHHhcccccchHH---H-HHHHHHHhhhhcCcHHHHHHH
Q 003081 352 TESLDQLVPHLARLVRSGIG-------LNTRVGVASFISLLVQKIGMDIKPYTS---M-LLRLLFPVVKEEKSAAAKRAF 420 (850)
Q Consensus 352 ~~~l~~lvp~L~~~lk~~~~-------~~tr~~a~~~l~~L~~~~~~~~~py~~---~-lL~~Ll~~l~~D~n~~Vr~~~ 420 (850)
.++++.+++.+.+.+++..+ ...|-||.+.++.|+....+. .||.+ . +.+.+++.+ .++.--.|..+
T Consensus 405 ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~-s~~~~~mE~flv~hVfP~f-~s~~g~Lrara 482 (1010)
T KOG1991|consen 405 KETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKK-SPYKSQMEYFLVNHVFPEF-QSPYGYLRARA 482 (1010)
T ss_pred hhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccC-CchHHHHHHHHHHHhhHhh-cCchhHHHHHH
Confidence 78899999999999973322 224569999999998554322 24444 3 455577777 56777788888
Q ss_pred HHHHHHHhhh-CCH-HHHHHHHHHHHHhhcCCc--hhhHHHHHHHHHHHhhch---hhhhhhHhhHhHHHHHHhcC-Cch
Q 003081 421 ASACASVLKY-ATP-SQAQKLIEETAALHIDDK--NSQISCAILLKSYSSVAS---DVLSGYHAVIVPVIFISRFE-DDK 492 (850)
Q Consensus 421 a~alg~L~~~-~~~-~~v~~li~~l~~~~~~d~--~~r~~~~~~l~al~~~~~---~~f~~~~~~vlP~l~~~~~d-~~~ 492 (850)
|-.+++.... .++ ..+.+.++-....+..|. ..|..++.+++.+..... +.++++.+.++.-++.-+++ ..+
T Consensus 483 c~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End 562 (1010)
T KOG1991|consen 483 CWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEND 562 (1010)
T ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchh
Confidence 8888887632 233 334444444444443333 358888999999887765 34677777777655554443 233
Q ss_pred HHHHHHHHHHHHhcCCChhhHHhhHHHHH----HHHHHhhc-----CCCHHHHHHHH----HHHHHHHHHhCc---chhh
Q 003081 493 YVSDLFEELWEENTSGDRVTLQLYLGEIV----SLICEGIA-----SSSWSSKRKSA----KAICKLGEILGE---SLSN 556 (850)
Q Consensus 493 ~v~~~~~~v~~~l~~~~~~~i~~yl~eIl----~ll~~~L~-----d~s~~vr~~aa----~alg~la~~~g~---~l~~ 556 (850)
.+.....++ +...+..+.||..++. ..+.+++. +++.+-|+.+| .++..+..++.+ .+..
T Consensus 563 ~Lt~vme~i----V~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~ 638 (1010)
T KOG1991|consen 563 DLTNVMEKI----VCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQ 638 (1010)
T ss_pred HHHHHHHHH----HHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 333333333 3333334556654443 44445544 23334455444 334444444432 1222
Q ss_pred hHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHc
Q 003081 557 YHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAF 636 (850)
Q Consensus 557 ~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~ 636 (850)
.-+.++|++.-.|+..-.+.=+.++ +++.++.- +..+-+|.+=++.+.+....++..-.|=....-.|..++..-
T Consensus 639 le~~~l~vi~~iL~~~i~dfyeE~~----ei~~~~t~-~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g 713 (1010)
T KOG1991|consen 639 LEPIVLPVIGFILKNDITDFYEELL----EIVSSLTF-LSKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVTYG 713 (1010)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHH----HHHhhhhh-hhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeC
Confidence 2466667766666432222223333 23332221 111122333344555555555555677777777766655443
Q ss_pred CC-----chhHHhHHHHHHhhc
Q 003081 637 RD-----PKFFNIIFPLLFEMC 653 (850)
Q Consensus 637 ~~-----~~~~~iv~~~l~~~~ 653 (850)
.+ .....++........
T Consensus 714 ~~~~~s~~~y~~il~~i~~~~l 735 (1010)
T KOG1991|consen 714 TPSLLSNPDYLQILLEIIKKVL 735 (1010)
T ss_pred chhhhccchHHHHHHHHHHHHH
Confidence 32 223444444444443
No 81
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.32 Score=57.06 Aligned_cols=74 Identities=12% Similarity=0.152 Sum_probs=53.1
Q ss_pred CCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHH
Q 003081 126 YDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAF 205 (850)
Q Consensus 126 ~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~ 205 (850)
++||.-||-+..+-.-.|- =.+-+++++|.+..++.+++.-||..|..|+..+... ++.+.|--++++...+
T Consensus 109 QHPNEyiRG~TLRFLckLk------E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~--~~~L~pDapeLi~~fL 180 (948)
T KOG1058|consen 109 QHPNEYIRGSTLRFLCKLK------EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN--FEHLIPDAPELIESFL 180 (948)
T ss_pred cCchHhhcchhhhhhhhcC------cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh--hhhhcCChHHHHHHHH
Confidence 4577777766654222221 1456789999999999999999999999999998764 4566666677776655
Q ss_pred HH
Q 003081 206 RA 207 (850)
Q Consensus 206 ~~ 207 (850)
-.
T Consensus 181 ~~ 182 (948)
T KOG1058|consen 181 LT 182 (948)
T ss_pred Hh
Confidence 43
No 82
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.24 E-value=0.00044 Score=47.86 Aligned_cols=30 Identities=20% Similarity=0.118 Sum_probs=26.7
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHcc
Q 003081 158 IFDDLLIQSGSRLWRSREASCLSLADIIQG 187 (850)
Q Consensus 158 Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~ 187 (850)
|+|.+++.++|++|+||.+|+.+|+++.+.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999999999764
No 83
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.24 E-value=0.002 Score=64.75 Aligned_cols=109 Identities=11% Similarity=0.168 Sum_probs=81.4
Q ss_pred hhhhHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCC
Q 003081 91 SKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRL 170 (850)
Q Consensus 91 sr~gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~ 170 (850)
-|-.+..++|-++-.....++|| +|.+|..+.||+|.||+.+..+...|+..- .-+.-..++..++..+.|++
T Consensus 4 vR~n~i~~l~DL~~r~~~~ve~~----~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d---~ik~k~~l~~~~l~~l~D~~ 76 (178)
T PF12717_consen 4 VRNNAIIALGDLCIRYPNLVEPY----LPNLYKCLRDEDPLVRKTALLVLSHLILED---MIKVKGQLFSRILKLLVDEN 76 (178)
T ss_pred HHHHHHHHHHHHHHhCcHHHHhH----HHHHHHHHCCCCHHHHHHHHHHHHHHHHcC---ceeehhhhhHHHHHHHcCCC
Confidence 34556677777777666677776 666666679999999999999998887432 12233455677777889999
Q ss_pred hhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHH
Q 003081 171 WRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFR 206 (850)
Q Consensus 171 wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~ 206 (850)
+.||..|...|.++.....+..+.+++++++..+-.
T Consensus 77 ~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 77 PEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNN 112 (178)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 999999999999999876666777777777665443
No 84
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=0.016 Score=68.35 Aligned_cols=181 Identities=10% Similarity=0.071 Sum_probs=130.7
Q ss_pred CCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhcC-
Q 003081 371 GLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHID- 449 (850)
Q Consensus 371 ~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~~- 449 (850)
..|.|.++.+.+..++.+....=.-...+++...+..+ .|.++-|-=++..++..++..-++. +++.+.+.|.+
T Consensus 740 qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~L-kdedsyvyLnaI~gv~~Lcevy~e~----il~dL~e~Y~s~ 814 (982)
T KOG4653|consen 740 QVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTL-KDEDSYVYLNAIRGVVSLCEVYPED----ILPDLSEEYLSE 814 (982)
T ss_pred cccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHh-cccCceeeHHHHHHHHHHHHhcchh----hHHHHHHHHHhc
Confidence 56789999999988887433222235678999999999 6788888777777777888775544 45556666641
Q ss_pred ----CchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHH
Q 003081 450 ----DKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLIC 525 (850)
Q Consensus 450 ----d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~ 525 (850)
..++|..++.++..+...-|+.+..|...++-..+.+..+++...|-.....++.++......+..++-+.+..+.
T Consensus 815 k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il 894 (982)
T KOG4653|consen 815 KKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLIL 894 (982)
T ss_pred ccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 2467889999999999999999999999777766667677766666655566666665443334446656655555
Q ss_pred Hh-hcCCCHHHHHHHHHHHHHHHHHhCcchhh
Q 003081 526 EG-IASSSWSSKRKSAKAICKLGEILGESLSN 556 (850)
Q Consensus 526 ~~-L~d~s~~vr~~aa~alg~la~~~g~~l~~ 556 (850)
.. -.|.+.-+|++|+..+..+-...|..+.|
T Consensus 895 ~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLp 926 (982)
T KOG4653|consen 895 SLETTDGSVLVRRAAVHLLAELLNGTGEDLLP 926 (982)
T ss_pred HHHccCCchhhHHHHHHHHHHHHhccchhhHH
Confidence 54 45788999999999999998888765443
No 85
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.19 E-value=0.098 Score=59.37 Aligned_cols=268 Identities=10% Similarity=-0.038 Sum_probs=152.1
Q ss_pred hhhhhhHH----hhHHHHHHHhhhhhchhhh-------hHHHHHHhhc-CCCCHhHHHHHHHHHHHhccCChHHHHHHHH
Q 003081 89 LNSKRGAA----FGFSKIAKQAGDALKPHLR-------LLIPKLVRFQ-YDPDKNVQDAMAHIWKSLVADPKRTIDEHLD 156 (850)
Q Consensus 89 w~sr~gAa----~gl~~I~~~~~~~l~p~L~-------~lvp~L~r~~-~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~ 156 (850)
|..|..+. |-|.-+.+ ..+-|..||. ..++.|...+ .|+.+.|+..+.- .....+..
T Consensus 17 w~~~~~a~~~p~~~l~~la~-ldeRL~AhLdgL~~~G~~a~~~L~~aL~~d~~~ev~~~aa~--al~~~~~~-------- 85 (410)
T TIGR02270 17 WRQWKRALVAPDYVLEDLAE-LEERLLAHVDGLVLAGKAATELLVSALAEADEPGRVACAAL--ALLAQEDA-------- 85 (410)
T ss_pred HHHHHHHhcCCCCCHHHHHh-HHHHHHHHHHHHHHhhHhHHHHHHHHHhhCCChhHHHHHHH--HHhccCCh--------
Confidence 66666665 45555533 2234444443 4566666666 6888998875442 22212211
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhc
Q 003081 157 LIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDV 236 (850)
Q Consensus 157 ~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~ 236 (850)
..++.|+..+.|.+..||.++..||+.+- .++..+.+...++|.++.||.++..++.. +..+
T Consensus 86 ~~~~~L~~~L~d~~~~vr~aaa~ALg~i~-----------~~~a~~~L~~~L~~~~p~vR~aal~al~~------r~~~- 147 (410)
T TIGR02270 86 LDLRSVLAVLQAGPEGLCAGIQAALGWLG-----------GRQAEPWLEPLLAASEPPGRAIGLAALGA------HRHD- 147 (410)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhcCC-----------chHHHHHHHHHhcCCChHHHHHHHHHHHh------hccC-
Confidence 12677888888888889999999998752 12444556667789999999887644332 1111
Q ss_pred ccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhh
Q 003081 237 TLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHA 316 (850)
Q Consensus 237 ~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a 316 (850)
....+++. +.+.++.||..++.+++.+- -+..+|.|...+.+.+|.+..-
T Consensus 148 ----------~~~~L~~~-----L~d~d~~Vra~A~raLG~l~----------~~~a~~~L~~al~d~~~~VR~a----- 197 (410)
T TIGR02270 148 ----------PGPALEAA-----LTHEDALVRAAALRALGELP----------RRLSESTLRLYLRDSDPEVRFA----- 197 (410)
T ss_pred ----------hHHHHHHH-----hcCCCHHHHHHHHHHHHhhc----------cccchHHHHHHHcCCCHHHHHH-----
Confidence 12345554 34678899999999999883 1344555666676665554321
Q ss_pred hhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccch
Q 003081 317 ANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPY 396 (850)
Q Consensus 317 ~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py 396 (850)
+ +.... .++. +.-++.+...... .|.+.+...+..+... +
T Consensus 198 ----------------A---------~~al~-~lG~---~~A~~~l~~~~~~-~g~~~~~~l~~~lal~----~------ 237 (410)
T TIGR02270 198 ----------------A---------LEAGL-LAGS---RLAWGVCRRFQVL-EGGPHRQRLLVLLAVA----G------ 237 (410)
T ss_pred ----------------H---------HHHHH-HcCC---HhHHHHHHHHHhc-cCccHHHHHHHHHHhC----C------
Confidence 1 11111 1111 1112222222222 2455544433333211 1
Q ss_pred HHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHh
Q 003081 397 TSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSS 466 (850)
Q Consensus 397 ~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~~d~~~r~~~~~~l~al~~ 466 (850)
.+..+..|...+ .|.+ ||+.++.++|.+... +.++.+++.. +|+..+..++.++..|..
T Consensus 238 ~~~a~~~L~~ll-~d~~--vr~~a~~AlG~lg~p-------~av~~L~~~l-~d~~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 238 GPDAQAWLRELL-QAAA--TRREALRAVGLVGDV-------EAAPWCLEAM-REPPWARLAGEAFSLITG 296 (410)
T ss_pred chhHHHHHHHHh-cChh--hHHHHHHHHHHcCCc-------chHHHHHHHh-cCcHHHHHHHHHHHHhhC
Confidence 126677777777 4433 999999999998632 2334444444 345578888888777765
No 86
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.17 E-value=0.017 Score=64.18 Aligned_cols=210 Identities=14% Similarity=0.192 Sum_probs=129.7
Q ss_pred hHHHHHHHHhccchhhhhhhhHHhhH-HHHHHHhhhhhchhhhhHHHHHHhhcCC-CCHhHHHHHHHHHHHhccCChHHH
Q 003081 74 DLIYKFMDLANYQVSLNSKRGAAFGF-SKIAKQAGDALKPHLRLLIPKLVRFQYD-PDKNVQDAMAHIWKSLVADPKRTI 151 (850)
Q Consensus 74 ~lv~~fm~la~~~~~w~sr~gAa~gl-~~I~~~~~~~l~p~L~~lvp~L~r~~~D-p~~~VR~a~~~iw~~Lv~d~~~~i 151 (850)
++|.....-.+.+..-..+++|..-+ +.++++.-.-.+.|..+|+--+|.-..| -++..+.-+.++..-+..+.+..+
T Consensus 286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l 365 (516)
T KOG2956|consen 286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARL 365 (516)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhh
Confidence 45555554444443356778888766 4455655345567788888888888899 677788888888888887766555
Q ss_pred HHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH
Q 003081 152 DEHLDLIFDDLLIQSGSRLWR-SREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLT 230 (850)
Q Consensus 152 ~~~~~~Il~~Ll~~l~~~~wR-VReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~ 230 (850)
..+-+..+.-++..-.|.+.. +|.|.--++.-+.+..+...+.. |.+.++. -||. ..| .+++.+.+++
T Consensus 366 ~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~----i~~~Ilt-~D~~-~~~-----~~iKm~Tkl~ 434 (516)
T KOG2956|consen 366 FDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVN----ISPLILT-ADEP-RAV-----AVIKMLTKLF 434 (516)
T ss_pred hchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHH----HhhHHhc-Ccch-HHH-----HHHHHHHHHH
Confidence 555555555555555555544 45554444444444444333322 2222222 2332 211 2233343333
Q ss_pred HHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcC-cccccchHHHHHHHHHhc
Q 003081 231 IRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAG-IAIRPHLSDLVSCMLESL 301 (850)
Q Consensus 231 ~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g-~~l~P~lp~Lvp~LL~~L 301 (850)
-|.-. +.-..++..++|.++ ++..+.+..||+.+.-+|..|....| +.+.||+.+|-..-+.++
T Consensus 435 e~l~~------EeL~~ll~diaP~~i-qay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~Ll 499 (516)
T KOG2956|consen 435 ERLSA------EELLNLLPDIAPCVI-QAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLL 499 (516)
T ss_pred hhcCH------HHHHHhhhhhhhHHH-HHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHH
Confidence 22211 123347788899988 57888889999999999999999999 999999977765555544
No 87
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.16 E-value=0.19 Score=57.06 Aligned_cols=144 Identities=16% Similarity=0.042 Sum_probs=94.5
Q ss_pred ccCCcccccCCCCccchHHHHHHHhhhcC-CchHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhchhhhhHHHHH
Q 003081 43 FQEGAIGEGLGGGKLSTYKELCNLANEMG-QPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKL 121 (850)
Q Consensus 43 f~~g~~~~~~~g~~~styk~l~~lA~~~g-~p~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L~~lvp~L 121 (850)
|+.|..|-.|+|..++-|.-+-.|++.-- |.=...+++.+-..++......+-.++.-.+.+-. ++=...+.++.|.|
T Consensus 191 ~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll-~~n~q~~~q~rpfL 269 (898)
T COG5240 191 NQHGNEGYEPNGNPISQYHALGLLYQSKRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELL-KENSQALLQLRPFL 269 (898)
T ss_pred CccCCcccCCCCChHHHHHHHHHHHHHhcccHHHHHHHHHHhhcccccccchhheehHHHHHHHH-HhChHHHHHHHHHH
Confidence 66888999999999999999988887543 33334455444433322111122223333333322 11123567889999
Q ss_pred HhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCC
Q 003081 122 VRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRK 189 (850)
Q Consensus 122 ~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~ 189 (850)
-..+.|...+|.-.+.+..-++... .+-++.+++.+..|-.-++++.--.|-+|..-+..|.+..|
T Consensus 270 ~~wls~k~emV~lE~Ar~v~~~~~~--nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P 335 (898)
T COG5240 270 NSWLSDKFEMVFLEAARAVCALSEE--NVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYP 335 (898)
T ss_pred HHHhcCcchhhhHHHHHHHHHHHHh--ccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCC
Confidence 8889998888887766655445432 24566788888888888888766679999998988887554
No 88
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=97.11 E-value=0.19 Score=60.11 Aligned_cols=91 Identities=12% Similarity=0.137 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHH
Q 003081 533 WSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGR-LWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVS 611 (850)
Q Consensus 533 ~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r-~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~ 611 (850)
..+|..+..+++.+|..-+.- ....||.|.+.|.-. .-..|..++-|++.+|..- ....+.-+|.|.
T Consensus 945 ~~vra~~vvTlakmcLah~~L----aKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y--------Tam~d~YiP~I~ 1012 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRL----AKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY--------TAMTDRYIPMIA 1012 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH--------HHHHHHhhHHHH
Confidence 467888889999999765432 345788888888433 3567888888999888632 223566778888
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHH
Q 003081 612 SACRKKIKKYREAAFSCLEQVIKA 635 (850)
Q Consensus 612 ~e~~r~~~~~R~~Al~~Lg~l~~~ 635 (850)
..+++..+-+|++++..|..+++.
T Consensus 1013 ~~L~Dp~~iVRrqt~ilL~rLLq~ 1036 (1529)
T KOG0413|consen 1013 ASLCDPSVIVRRQTIILLARLLQF 1036 (1529)
T ss_pred HHhcCchHHHHHHHHHHHHHHHhh
Confidence 888899999999999999998874
No 89
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.07 E-value=1.2 Score=53.59 Aligned_cols=334 Identities=11% Similarity=0.076 Sum_probs=162.8
Q ss_pred ChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhH
Q 003081 170 LWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMD--DIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQS 247 (850)
Q Consensus 170 ~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ld--D~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~ 247 (850)
.|...++...|...+-.+...+ .++..+..+....++ ++-.-+ .++.+++++..-+.. ...++
T Consensus 423 ~wk~qea~l~a~~~~~~~~~~d---d~l~~l~~~~~~~l~~~e~P~Ll----~Ra~~~i~~fs~~~~--------~~~~~ 487 (1005)
T KOG2274|consen 423 WWKIQEALLVAAESVRIDDAND---DKLIELTIMIDNGLVYQESPFLL----LRAFLTISKFSSSTV--------INPQL 487 (1005)
T ss_pred HHHHHHHHHHHHhhcccCcchH---HHHHHHHHHHHhhcccccCHHHH----HHHHHHHHHHHhhhc--------cchhH
Confidence 4777777777766654333333 333333333322222 221212 134455553321111 12334
Q ss_pred HHHhHHHHhhccCC-CchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhh
Q 003081 248 MDIVLPFLLAEGIL-SKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKL 326 (850)
Q Consensus 248 l~~lLP~Ll~~gL~-s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~i 326 (850)
+..++-..+ .++. +..+.+|..++.++.--+ ..+.+.|+.|.++..|+++.+..+.++++-
T Consensus 488 ~~~fl~~~v-~~l~~~~~~~~ki~a~~~~~~~~--~~~vl~~~~p~ild~L~qlas~~s~evl~l--------------- 549 (1005)
T KOG2274|consen 488 LQHFLNATV-NALTMDVPPPVKISAVRAFCGYC--KVKVLLSLQPMILDGLLQLASKSSDEVLVL--------------- 549 (1005)
T ss_pred HHHHHHHHH-HhhccCCCCchhHHHHHHHHhcc--CceeccccchHHHHHHHHHcccccHHHHHH---------------
Confidence 455444444 2332 345566666665544433 346789999999999999998766555432
Q ss_pred HHHHHhhccCCcHHHHHHHHHhhcCh--hhH-hhHHHHHHHHHhccCCCchHhhHH-HHHHHHHHHhcccccchHHHHHH
Q 003081 327 ENLRISIAKGSPMWDTLDLCINVVDT--ESL-DQLVPHLARLVRSGIGLNTRVGVA-SFISLLVQKIGMDIKPYTSMLLR 402 (850)
Q Consensus 327 d~~r~~~~~~s~l~eal~~~~~~ld~--~~l-~~lvp~L~~~lk~~~~~~tr~~a~-~~l~~L~~~~~~~~~py~~~lL~ 402 (850)
+||++...+.+--+ ..+ ..+.|......-.....|.-++-+ ..+-.|+. ...-..|+..++++
T Consensus 550 ------------lmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q-~~~~~g~m~e~~iP 616 (1005)
T KOG2274|consen 550 ------------LMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQ-IAANYGPMQERLIP 616 (1005)
T ss_pred ------------HHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHH-HHHhhcchHHHHHH
Confidence 35666544433111 012 335565555443323444222212 22222333 22345577888888
Q ss_pred HHHHhhhhcCc---H-HHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhchhhh-hhhHh
Q 003081 403 LLFPVVKEEKS---A-AAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVL-SGYHA 477 (850)
Q Consensus 403 ~Ll~~l~~D~n---~-~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~~d~~~r~~~~~~l~al~~~~~~~f-~~~~~ 477 (850)
.+++.+ +-++ + .... .+.+++..+.++.+..+ +....
T Consensus 617 slisil-~~~~~~~~~~l~~-------------------------------------~aidvLttvvr~tp~pL~~~l~~ 658 (1005)
T KOG2274|consen 617 SLISVL-QLNADKAPAGLCA-------------------------------------IAIDVLTTVLRNTPSPLPNLLIC 658 (1005)
T ss_pred HHHHHH-cCcccccCchhhH-------------------------------------HHHHHHHHHHhcCCCCccHHHHH
Confidence 888877 3222 1 1111 22334444444433322 22333
Q ss_pred hHhHHHHHH-hcCCchHHHHHHHHHHHHhcCCChhhHH-------hhHHHHHHHHHHhhcCCC-HHHHHHHHHHHHHHHH
Q 003081 478 VIVPVIFIS-RFEDDKYVSDLFEELWEENTSGDRVTLQ-------LYLGEIVSLICEGIASSS-WSSKRKSAKAICKLGE 548 (850)
Q Consensus 478 ~vlP~l~~~-~~d~~~~v~~~~~~v~~~l~~~~~~~i~-------~yl~eIl~ll~~~L~d~s-~~vr~~aa~alg~la~ 548 (850)
..+|.+... .|.+|..+-....+++..++..+...+. .-+..|++.+.+.|+-.. ..--..+...+-.++.
T Consensus 659 ~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit 738 (1005)
T KOG2274|consen 659 YAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLIT 738 (1005)
T ss_pred HHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHH
Confidence 344444332 4544545554444554444333211111 113467777776654321 1122244455667777
Q ss_pred HhCcchhhhHHHHHHHHHHhcCC-CChhhHHHHHHHHHHH
Q 003081 549 ILGESLSNYHHVLLESIMKEVPG-RLWEGKDALLYAIGSI 587 (850)
Q Consensus 549 ~~g~~l~~~l~~llp~L~~~L~~-r~~~gKe~vL~aL~~l 587 (850)
+.|..+.+.+++|+..++..++. .+...=..++-.|+.+
T Consensus 739 ~a~~el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL 778 (1005)
T KOG2274|consen 739 HASSELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHL 778 (1005)
T ss_pred HHHHHhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 88899999999999998888843 3333333444444444
No 90
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.06 E-value=0.019 Score=69.53 Aligned_cols=184 Identities=14% Similarity=0.116 Sum_probs=138.1
Q ss_pred CchhhHHHHHHHHHHHhhch-hhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhh
Q 003081 450 DKNSQISCAILLKSYSSVAS-DVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGI 528 (850)
Q Consensus 450 d~~~r~~~~~~l~al~~~~~-~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L 528 (850)
+...|..+..-+..+....+ +.-..+...+...+-.-..|.+-.|.......+..++.+.+...+.|...+.+.+...+
T Consensus 266 ~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~l 345 (815)
T KOG1820|consen 266 KWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRL 345 (815)
T ss_pred chHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHh
Confidence 44456555555444444333 22234455455444333456666677777788888888877778999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHH
Q 003081 529 ASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVD 608 (850)
Q Consensus 529 ~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~ 608 (850)
.+.-..+|.....++..++.. ..+..+++.+..++.++.+..|......|.....+..... .....+..++|
T Consensus 346 kekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~--~~~~t~~~l~p 417 (815)
T KOG1820|consen 346 KEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKT--VEKETVKTLVP 417 (815)
T ss_pred hhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcC--cchhhHHHHhH
Confidence 999889999888888877772 2467789999999999999999999999988887665311 12346788999
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHcCCchh
Q 003081 609 MVSSACRKKIKKYREAAFSCLEQVIKAFRDPKF 641 (850)
Q Consensus 609 ~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~~~~~ 641 (850)
.++...++++.++|.+|+.+++.+.+.++...+
T Consensus 418 ~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~ 450 (815)
T KOG1820|consen 418 HLIKHINDTDKDVRKAALEAVAAVMKVHGEEVF 450 (815)
T ss_pred HHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999999999999976433
No 91
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.26 Score=57.06 Aligned_cols=69 Identities=16% Similarity=0.235 Sum_probs=53.6
Q ss_pred HHHHHHhhcCCCCHhHHHHH---HHHHHHhccCChH---HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHH
Q 003081 117 LIPKLVRFQYDPDKNVQDAM---AHIWKSLVADPKR---TIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADII 185 (850)
Q Consensus 117 lvp~L~r~~~Dp~~~VR~a~---~~iw~~Lv~d~~~---~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll 185 (850)
+|.+....+.|.+..||.++ .-.|+...+-+.. .-.++.+..+..+...+.|.+|.||.-|..+||++-
T Consensus 235 ~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~ 309 (823)
T KOG2259|consen 235 CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFE 309 (823)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHH
Confidence 45666667799999999998 5567776633321 224467888999999999999999999999999873
No 92
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=1.3 Score=53.25 Aligned_cols=154 Identities=14% Similarity=0.129 Sum_probs=99.9
Q ss_pred hhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHh-ccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHH
Q 003081 264 VDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLES-LSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDT 342 (850)
Q Consensus 264 ~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~-Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~ea 342 (850)
++..-++++-.+..++...|....+++|.++...-.. +|...|+. ++ ..++.
T Consensus 480 s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql--------------------~~-------Tss~~ 532 (982)
T KOG2022|consen 480 SLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQL--------------------LS-------TSSDL 532 (982)
T ss_pred HHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhH--------------------HH-------HHHHH
Confidence 4666777888899999999988788855554433221 11111111 11 12344
Q ss_pred HHHHHhhcChh--hHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhh-cCcHHHHHH
Q 003081 343 LDLCINVVDTE--SLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKE-EKSAAAKRA 419 (850)
Q Consensus 343 l~~~~~~ld~~--~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~-D~n~~Vr~~ 419 (850)
++.+..++.+. .+..-+|.|.+.+..+ ..-+.+...+..||+.|+.++.||++.++..+...+.. .-.+++|..
T Consensus 533 igs~s~~l~e~P~~ln~sl~~L~~~Lh~s---k~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~k 609 (982)
T KOG2022|consen 533 IGSLSNWLGEHPMYLNPSLPLLFQGLHNS---KESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLK 609 (982)
T ss_pred HHHHHHHHhcCCcccCchHHHHHHHhcCc---hHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHH
Confidence 55555555332 2455678777777432 12234445588899999999999999999999888731 224578888
Q ss_pred HHHHHHHHhhhCCHHHHHHHHHHHHHhh
Q 003081 420 FASACASVLKYATPSQAQKLIEETAALH 447 (850)
Q Consensus 420 ~a~alg~L~~~~~~~~v~~li~~l~~~~ 447 (850)
...++||++....++.+.+++-++...+
T Consensus 610 lm~sIGyvls~~~pEe~~kyl~~lin~i 637 (982)
T KOG2022|consen 610 LMKSIGYVLSRLKPEEIPKYLMKLINPI 637 (982)
T ss_pred HHHHHHHHHHhccHHhHHHHHHHHHHHH
Confidence 9999999998777776666666555543
No 93
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=1.2 Score=52.87 Aligned_cols=160 Identities=13% Similarity=0.163 Sum_probs=90.7
Q ss_pred HHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHH----Hhhhhc
Q 003081 244 ARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIE----LHAANA 319 (850)
Q Consensus 244 ~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~----~~a~~~ 319 (850)
+..++-..+-.++ .+. ++..+|..++++|++...+-...++-.. +..|+..+. .+|..++-.. ....
T Consensus 290 GnAILYE~V~TI~--~I~-~~~~LrvlainiLgkFL~n~d~NirYva---Ln~L~r~V~-~d~~avqrHr~tIleCL~-- 360 (866)
T KOG1062|consen 290 GNAILYECVRTIM--DIR-SNSGLRVLAINILGKFLLNRDNNIRYVA---LNMLLRVVQ-QDPTAVQRHRSTILECLK-- 360 (866)
T ss_pred hhHHHHHHHHHHH--hcc-CCchHHHHHHHHHHHHhcCCccceeeee---hhhHHhhhc-CCcHHHHHHHHHHHHHhc--
Confidence 4445555454444 233 3466778888888877666554444222 233333333 2232221000 0000
Q ss_pred ccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHH
Q 003081 320 GIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSM 399 (850)
Q Consensus 320 ~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~ 399 (850)
|.-..+| ..|+|-....+++.++..++..+++.+.+. ....|.-++.-+..++.++..+=.-|.+.
T Consensus 361 ----DpD~SIk---------rralELs~~lvn~~Nv~~mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W~idt 426 (866)
T KOG1062|consen 361 ----DPDVSIK---------RRALELSYALVNESNVRVMVKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRWHIDT 426 (866)
T ss_pred ----CCcHHHH---------HHHHHHHHHHhccccHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchhHHHH
Confidence 0001111 346676666677778888899999988876 66788889999988988876655566666
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhC
Q 003081 400 LLRLLFPVVKEEKSAAAKRAFASACASVLKYA 431 (850)
Q Consensus 400 lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~ 431 (850)
+++.+-.+ ..-|+.....++-.++...
T Consensus 427 ml~Vl~~a-----G~~V~~dv~~nll~LIa~~ 453 (866)
T KOG1062|consen 427 MLKVLKTA-----GDFVNDDVVNNLLRLIANA 453 (866)
T ss_pred HHHHHHhc-----ccccchhhHHHHHHHHhcC
Confidence 66655433 3345555556665665544
No 94
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.02 E-value=0.0073 Score=59.88 Aligned_cols=116 Identities=15% Similarity=0.124 Sum_probs=86.0
Q ss_pred hhHhHHHHHHhcCCchHHHHHHHHHHHHhcCC-ChhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH---HHHhCc
Q 003081 477 AVIVPVIFISRFEDDKYVSDLFEELWEENTSG-DRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKL---GEILGE 552 (850)
Q Consensus 477 ~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~-~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~l---a~~~g~ 552 (850)
..+||++|.|..+.+..-+..+.+-..++... .+..+-+.++.++.-+..+|++.+.+|...+..+|..| ....|+
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~ 116 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE 116 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence 46889989898876665555544444444332 45678899999999999999999999999999999999 567899
Q ss_pred chhhhHHHHHHHHH----HhcC-------CCChhhHHHHHHHHHHHHHhcc
Q 003081 553 SLSNYHHVLLESIM----KEVP-------GRLWEGKDALLYAIGSISTSCH 592 (850)
Q Consensus 553 ~l~~~l~~llp~L~----~~L~-------~r~~~gKe~vL~aL~~l~~~~~ 592 (850)
.+.||+.+++|.+- ...+ .+.-..++.|-++|..+-..++
T Consensus 117 aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG 167 (183)
T PF10274_consen 117 ALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGG 167 (183)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcC
Confidence 99999999999987 3321 1123456777777766655444
No 95
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.02 E-value=1.9 Score=55.03 Aligned_cols=353 Identities=11% Similarity=0.079 Sum_probs=182.9
Q ss_pred hhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhh--ccCCCch-h-H
Q 003081 191 DQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLA--EGILSKV-D-S 266 (850)
Q Consensus 191 ~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~--~gL~s~~-~-e 266 (850)
..+.|+...++...| |++....||--.. ..++.+ +|.+.|... .....+..|..+++. .||.+.. + -
T Consensus 44 ~~~~pl~~~l~~~~~--L~h~d~dvrllva---cCvsei-lRi~aPeaP---y~~~~lkdIf~~~~~q~~gL~d~~sp~f 114 (1266)
T KOG1525|consen 44 ASLLPLADHLIKDFL--LKHKDKDVRLLVA---CCVSEI-LRIYAPEAP---YTDEQLKDIFQLILSQFSGLGDVESPYF 114 (1266)
T ss_pred HHHHHHHHHHhhHHH--hcCCCcChhHHHH---HHHHHH-HHHhCCCCC---CcHHHHHHHHHHHHHHHhhccCCCCcch
Confidence 346666666666655 6777777876432 344444 577766532 112255555555543 4776532 1 1
Q ss_pred HH-HHHHHHHHHHHHhcCcccccchHHHHHHHHHhcc----ccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHH
Q 003081 267 IS-KASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLS----SLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWD 341 (850)
Q Consensus 267 vr-~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls----~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~e 341 (850)
.| -+.+.++..+. -+--..-|--.++++.+..++- ...|+.+. . |.+
T Consensus 115 ~r~~~lletl~~~k-~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~-------------------------~--~~~ 166 (1266)
T KOG1525|consen 115 KRYFYLLETLAKVK-FCLLMLLEDCQELVHELFRTFFDLARKGHPKKVF-------------------------N--MLD 166 (1266)
T ss_pred hhHHHHHHHHHHhH-HHheeeccchHHHHHHHHHHHHHHHhccccHHHH-------------------------H--HHH
Confidence 22 23345555443 2111111222333333333332 11111110 0 223
Q ss_pred HHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHH
Q 003081 342 TLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFA 421 (850)
Q Consensus 342 al~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a 421 (850)
.+..++...|.-..+-|.-.+.++++. +-++..++..+-..++.+++..+.+....++...+..- .-+-.+++..+-
T Consensus 167 i~~~li~e~d~v~~e~L~~ll~~lv~~--~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~-~s~~~~~~~~~h 243 (1266)
T KOG1525|consen 167 IAIMLITEEDTVQSELLDVLLENLVKP--GRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEY-KSRQSSLKIKYH 243 (1266)
T ss_pred HHHHHHHhhccchHHHHHHHHHHhccC--CCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhc-cccccchhhHHH
Confidence 333333333322222233333344433 34456677777777888998888888777777766553 224455566666
Q ss_pred HHHHHHhhhCCHHHHHHHHHHHHHhhc-CCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHH
Q 003081 422 SACASVLKYATPSQAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEE 500 (850)
Q Consensus 422 ~alg~L~~~~~~~~v~~li~~l~~~~~-~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~ 500 (850)
.-+-++-++++ +.+...++++..++. +++.+|..+..+++.+.......+..-.+.+.-..+-...|-+.+||-.|.+
T Consensus 244 e~i~~L~~~~p-~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~ 322 (1266)
T KOG1525|consen 244 ELILELWRIAP-QLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVE 322 (1266)
T ss_pred HHHHHHHHhhH-HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHH
Confidence 66666666554 456677888877665 6777899888888877654333332212222222122235667778877766
Q ss_pred HHHHhcCCChhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHH
Q 003081 501 LWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDAL 580 (850)
Q Consensus 501 v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~v 580 (850)
.-....-+.+. +.. -..+.-.+.....|++..+|........++... -..+.+.++..+.+.+.+|-|.+|...
T Consensus 323 ~~~~~l~~~~~-~~~-~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~----~l~~~~~ll~~~~eR~rDKk~~VR~~A 396 (1266)
T KOG1525|consen 323 SIKQCLLNNPS-IAK-ASTILLALRERDLDEDVRVRTQVVIVACDVMKF----KLVYIPLLLKLVAERLRDKKIKVRKQA 396 (1266)
T ss_pred HhHHHHhcCch-hhh-HHHHHHHHHhhcCChhhhheeeEEEEEeehhHh----hhhhhHHHHHHHHHHHhhhhHHHHHHH
Confidence 54443322211 111 111222222233344444444333222222221 112334488888899999999999999
Q ss_pred HHHHHHHHHh
Q 003081 581 LYAIGSISTS 590 (850)
Q Consensus 581 L~aL~~l~~~ 590 (850)
+..|..+-.+
T Consensus 397 m~~LaqlYk~ 406 (1266)
T KOG1525|consen 397 MNGLAQLYKN 406 (1266)
T ss_pred HHHHHHHHHH
Confidence 9999999874
No 96
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=96.97 E-value=0.55 Score=56.68 Aligned_cols=104 Identities=13% Similarity=0.048 Sum_probs=66.1
Q ss_pred hHHHHHHhhcCCCCHhHHHHHHHHHHHhccCC--hHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhh
Q 003081 116 LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADP--KRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQV 193 (850)
Q Consensus 116 ~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~--~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l 193 (850)
.+++.|.+.+...+..+.-.+....+-|.-.. +..+. -..+++.|.+-+.+++-..+..+..+|.+|-... .+
T Consensus 290 ~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~--~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~---~~ 364 (708)
T PF05804_consen 290 GIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMA--ESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDP---EL 364 (708)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHH--HcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCH---HH
Confidence 56777777777778887777777766666332 11111 1347888888888888899999999998886532 23
Q ss_pred hHHHHH--HHHHHHHHhccCcHHHHHHHHHHHHHH
Q 003081 194 GKHLRR--IWTAAFRAMDDIKETVRTAGDKLCRSV 226 (850)
Q Consensus 194 ~~~L~~--i~~~l~~~ldD~k~~VR~aA~~~~~~L 226 (850)
.+.+-. ++|.+...+.|.+ .|..+..++..+
T Consensus 365 R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~L 397 (708)
T PF05804_consen 365 RSQMVSLGLIPKLVELLKDPN--FREVALKILYNL 397 (708)
T ss_pred HHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHh
Confidence 333333 5666777777653 444454444444
No 97
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.15 Score=60.11 Aligned_cols=406 Identities=14% Similarity=0.114 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHh
Q 003081 154 HLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRL 233 (850)
Q Consensus 154 ~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~ 233 (850)
-+-.+++++++++...+-....-+=.=+.+-..+.+...+ ..+....+-..|..+.+|.-|.+ +.+.+ |
T Consensus 46 DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~-----~avnt~~kD~~d~np~iR~lAlr---tm~~l--~- 114 (734)
T KOG1061|consen 46 DVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAI-----LAVNTFLKDCEDPNPLIRALALR---TMGCL--R- 114 (734)
T ss_pred chHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHH-----hhhhhhhccCCCCCHHHHHHHhh---ceeeE--e-
Confidence 3456677777777665544455554444444444432211 11122222335677778776643 22211 0
Q ss_pred hhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhh-HH
Q 003081 234 CDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLN-YI 312 (850)
Q Consensus 234 ~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~n-yl 312 (850)
...+.+.+.-.|. +++.++.+.+|..+...+.++-...+... +-..+++.|-+.+++..|.++. .+
T Consensus 115 ----------v~~i~ey~~~Pl~-~~l~d~~~yvRktaa~~vakl~~~~~~~~--~~~gl~~~L~~ll~D~~p~VVAnAl 181 (734)
T KOG1061|consen 115 ----------VDKITEYLCDPLL-KCLKDDDPYVRKTAAVCVAKLFDIDPDLV--EDSGLVDALKDLLSDSNPMVVANAL 181 (734)
T ss_pred ----------ehHHHHHHHHHHH-HhccCCChhHHHHHHHHHHHhhcCChhhc--cccchhHHHHHHhcCCCchHHHHHH
Confidence 1224444444444 57888899999988888777754433321 2235677777777777776642 11
Q ss_pred HHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcCh-hhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcc
Q 003081 313 ELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDT-ESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGM 391 (850)
Q Consensus 313 ~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~-~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~ 391 (850)
.. + .+..+.--. .+. .....++..++..+..-..|. + +-++..++...+.
T Consensus 182 aa--------------L----------~eI~e~~~~-~~~~~l~~~~~~~lL~al~ec~EW~-q---i~IL~~l~~y~p~ 232 (734)
T KOG1061|consen 182 AA--------------L----------SEIHESHPS-VNLLELNPQLINKLLEALNECTEWG-Q---IFILDCLAEYVPK 232 (734)
T ss_pred HH--------------H----------HHHHHhCCC-CCcccccHHHHHHHHHHHHHhhhhh-H---HHHHHHHHhcCCC
Confidence 10 0 000000000 000 001122223332222211221 1 2223333333333
Q ss_pred cccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCH---HHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhc
Q 003081 392 DIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATP---SQAQKLIEETAALHIDDKNSQISCAILLKSYSSVA 468 (850)
Q Consensus 392 ~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~---~~v~~li~~l~~~~~~d~~~r~~~~~~l~al~~~~ 468 (850)
+- --+..+++.+.+.+ .+-|+.|--.+...+-+++...+. ....++.+++....+..++..-.+..=+.-+....
T Consensus 233 d~-~ea~~i~~r~~p~L-qh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~ 310 (734)
T KOG1061|consen 233 DS-REAEDICERLTPRL-QHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKR 310 (734)
T ss_pred Cc-hhHHHHHHHhhhhh-ccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhC
Confidence 22 22445666666666 556655543433444444333322 12223333333333322322222221122222333
Q ss_pred hhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 003081 469 SDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGE 548 (850)
Q Consensus 469 ~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~ 548 (850)
+..|+..... |...+.+.-+++..=.++...++.. ..+++++.-+..+..+-+.+.=+.+.+++|.++.
T Consensus 311 p~~~~~~~~~-----Ff~kynDPiYvK~eKleil~~la~~------~nl~qvl~El~eYatevD~~fvrkaIraig~~ai 379 (734)
T KOG1061|consen 311 PEILKVEIKV-----FFCKYNDPIYVKLEKLEILIELAND------ANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAI 379 (734)
T ss_pred hHHHHhHhHe-----eeeecCCchhhHHHHHHHHHHHhhH------hHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhh
Confidence 4444332222 2233333335655444555554432 2344566666666667777777889999999998
Q ss_pred HhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhh-cCHHHHHHHHH
Q 003081 549 ILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRK-KIKKYREAAFS 627 (850)
Q Consensus 549 ~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r-~~~~~R~~Al~ 627 (850)
+.... ...++.|.+.+.-+---+...++..+-.+..++.. -.+.+++.+...... .+++-|.+-+|
T Consensus 380 k~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~--------~~~~vv~~l~~~~~sl~epeak~amiW 446 (734)
T KOG1061|consen 380 KAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPN--------KYESVVAILCENLDSLQEPEAKAALIW 446 (734)
T ss_pred hhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCC--------chhhhhhhhcccccccCChHHHHHHHH
Confidence 77554 34556666666533222333333344444443322 224454444433322 46777777788
Q ss_pred HHHHHHHHcCC
Q 003081 628 CLEQVIKAFRD 638 (850)
Q Consensus 628 ~Lg~l~~~~~~ 638 (850)
.+|+++..+++
T Consensus 447 ilg~y~~~i~~ 457 (734)
T KOG1061|consen 447 ILGEYAERIEN 457 (734)
T ss_pred HHhhhhhccCc
Confidence 88888877764
No 98
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.90 E-value=0.0035 Score=54.60 Aligned_cols=85 Identities=15% Similarity=0.135 Sum_probs=65.8
Q ss_pred HHHHHhh-cCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCC
Q 003081 522 SLICEGI-ASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDP 600 (850)
Q Consensus 522 ~ll~~~L-~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~ 600 (850)
+.+.+.+ ++++|.+|..++.++|.+. -+.++|.|.+.+++..|..|..++.+|+.+..
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~----------- 60 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIGD----------- 60 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-----------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------
Confidence 4455666 8999999999999999322 25788999999988899999999999986631
Q ss_pred CchHHHHHHHHHHHhh-cCHHHHHHHHHHHH
Q 003081 601 TTPFAIVDMVSSACRK-KIKKYREAAFSCLE 630 (850)
Q Consensus 601 ~~~~~i~~~l~~e~~r-~~~~~R~~Al~~Lg 630 (850)
+..++.+.+.+.+ ++..+|..|+.+||
T Consensus 61 ---~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 ---PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ---HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 4456667776665 45677999999886
No 99
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.90 E-value=1.7 Score=52.47 Aligned_cols=154 Identities=12% Similarity=0.070 Sum_probs=98.7
Q ss_pred cCCCCH-hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHH
Q 003081 125 QYDPDK-NVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTA 203 (850)
Q Consensus 125 ~~Dp~~-~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~ 203 (850)
....|+ ...++|..|..++..+- .+..+++++++++..++-.++.-.=.=+-...+..+.+.+ -.+..
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~------dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~l-----LavNt 96 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGE------DMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELAL-----LAVNT 96 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCC------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHH-----HHHHH
Confidence 355555 35567888988887543 3666677777777777778877766655555555542211 22333
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcC
Q 003081 204 AFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAG 283 (850)
Q Consensus 204 l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g 283 (850)
..+=+.|.++.+|-.|.+....+ ...+++..++|.+. +.+.++.+.||+.|+.++.++-+...
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls~l----------------~~~el~~~~~~~ik-~~l~d~~ayVRk~Aalav~kly~ld~ 159 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLSLL----------------RVKELLGNIIDPIK-KLLTDPHAYVRKTAALAVAKLYRLDK 159 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHHhc----------------ChHHHHHHHHHHHH-HHccCCcHHHHHHHHHHHHHHHhcCH
Confidence 44456789999999886443322 13457788888877 46788999999999999999975544
Q ss_pred cccccchHH-HHHHHHHhccccchhhh
Q 003081 284 IAIRPHLSD-LVSCMLESLSSLEDQGL 309 (850)
Q Consensus 284 ~~l~P~lp~-Lvp~LL~~Ls~~ep~~~ 309 (850)
.. |... ++..+-.++.+.+|.++
T Consensus 160 ~l---~~~~g~~~~l~~l~~D~dP~Vi 183 (757)
T COG5096 160 DL---YHELGLIDILKELVADSDPIVI 183 (757)
T ss_pred hh---hhcccHHHHHHHHhhCCCchHH
Confidence 32 1112 34445555566666654
No 100
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=96.82 E-value=0.3 Score=56.00 Aligned_cols=277 Identities=13% Similarity=0.129 Sum_probs=149.7
Q ss_pred HhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhh----hcCcHHHHHHHHHHHHHHhhh
Q 003081 355 LDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVK----EEKSAAAKRAFASACASVLKY 430 (850)
Q Consensus 355 l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~----~D~n~~Vr~~~a~alg~L~~~ 430 (850)
.+.++..|...++.. +-..-.-..+++..++...+..+.|+++.+++.+...+. +..|+.-.-..-.++|.+++.
T Consensus 24 ~~~ll~~Lf~~i~~~-~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~ 102 (435)
T PF03378_consen 24 AQQLLQNLFALIEKP-GSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRF 102 (435)
T ss_dssp HHHHHHHHHHHHHTT--STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHh
Confidence 345666666666553 212122344445455556678889998888877776662 455676777777889999987
Q ss_pred CCHH---HHHH----HHHHHHHhhcCC-chhhHHHHHHHHHHHhhch-hhhhhhHhhHhHHHHHH-hcCCchHHHHHHHH
Q 003081 431 ATPS---QAQK----LIEETAALHIDD-KNSQISCAILLKSYSSVAS-DVLSGYHAVIVPVIFIS-RFEDDKYVSDLFEE 500 (850)
Q Consensus 431 ~~~~---~v~~----li~~l~~~~~~d-~~~r~~~~~~l~al~~~~~-~~f~~~~~~vlP~l~~~-~~d~~~~v~~~~~~ 500 (850)
..+. .+.. +++.+...+..| .+.---+.+++..+....+ +.+.+.+..++|.++.. ..+...++ .....
T Consensus 103 ~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-Palvr 181 (435)
T PF03378_consen 103 VCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVR 181 (435)
T ss_dssp S-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHH
T ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHH
Confidence 5532 2223 333333333333 2223345666666666555 44444555566655432 22212222 22222
Q ss_pred HHHHhcCCChhhH--HhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCc-chhhhHHHHHHHHHHhcC-CCChhh
Q 003081 501 LWEENTSGDRVTL--QLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGE-SLSNYHHVLLESIMKEVP-GRLWEG 576 (850)
Q Consensus 501 v~~~l~~~~~~~i--~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~-~l~~~l~~llp~L~~~L~-~r~~~g 576 (850)
++.......+..+ ..++..|+..+.+++++..-+ +.++..+..+...++. .+.+|++.++.++.++|+ .|++.-
T Consensus 182 LL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf 259 (435)
T PF03378_consen 182 LLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKF 259 (435)
T ss_dssp HHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHH
T ss_pred HHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHH
Confidence 3332222111112 367788999999998887533 5688999999999886 689999999999999995 677666
Q ss_pred HHHHHHHHHHHHHhcccc-----cccCCCCchHHHH-HHHHHHHhh-cCHHHHHHHHHHHHHHHHH
Q 003081 577 KDALLYAIGSISTSCHKD-----ISAEDPTTPFAIV-DMVSSACRK-KIKKYREAAFSCLEQVIKA 635 (850)
Q Consensus 577 Ke~vL~aL~~l~~~~~~~-----l~~~~~~~~~~i~-~~l~~e~~r-~~~~~R~~Al~~Lg~l~~~ 635 (850)
+...+..++.++.+.+.. +..-.+.....++ +.++...++ .+..=|+.++-.+.+++-.
T Consensus 260 ~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~e 325 (435)
T PF03378_consen 260 VKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCE 325 (435)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhc
Confidence 666666665554443211 1110122333443 344455544 3445577777777777743
No 101
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.81 E-value=0.24 Score=54.95 Aligned_cols=172 Identities=19% Similarity=0.206 Sum_probs=104.9
Q ss_pred hHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHH
Q 003081 74 DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDE 153 (850)
Q Consensus 74 ~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~ 153 (850)
.-++....+..+. .|.-|.+|+..++.+-. ...+|.|.....|+++.||..+..+.+.+- +
T Consensus 43 ~~~~~~~~~l~~~-~~~vr~~aa~~l~~~~~----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~-~------- 103 (335)
T COG1413 43 EAADELLKLLEDE-DLLVRLSAAVALGELGS----------EEAVPLLRELLSDEDPRVRDAAADALGELG-D------- 103 (335)
T ss_pred hhHHHHHHHHcCC-CHHHHHHHHHHHhhhch----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC-C-------
Confidence 3455555555554 57788888866444322 236888888899999999999998555442 1
Q ss_pred HHHHHHHHHHHhhC-CCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcH------------HHHHHHH
Q 003081 154 HLDLIFDDLLIQSG-SRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKE------------TVRTAGD 220 (850)
Q Consensus 154 ~~~~Il~~Ll~~l~-~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~------------~VR~aA~ 220 (850)
+.-++.++..+. |.+|.||..+..+|+.+-..+. +..++..++|... .||.++.
T Consensus 104 --~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a-----------~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~ 170 (335)
T COG1413 104 --PEAVPPLVELLENDENEGVRAAAARALGKLGDERA-----------LDPLLEALQDEDSGSAAAALDAALLDVRAAAA 170 (335)
T ss_pred --hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh-----------hHHHHHHhccchhhhhhhhccchHHHHHHHHH
Confidence 122344444444 7899999999999998855433 3333445555442 3444443
Q ss_pred HHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHh
Q 003081 221 KLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLES 300 (850)
Q Consensus 221 ~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~ 300 (850)
..+..++ + ...+|.+. .++.+....||..+...++.+.... ..+.+.+...
T Consensus 171 ~~l~~~~-------~-------------~~~~~~l~-~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~ 221 (335)
T COG1413 171 EALGELG-------D-------------PEAIPLLI-ELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKA 221 (335)
T ss_pred HHHHHcC-------C-------------hhhhHHHH-HHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHH
Confidence 2222111 1 12233333 2455666799999999998885322 4666777777
Q ss_pred ccccch
Q 003081 301 LSSLED 306 (850)
Q Consensus 301 Ls~~ep 306 (850)
+++...
T Consensus 222 ~~~~~~ 227 (335)
T COG1413 222 LSDESL 227 (335)
T ss_pred hcCCCH
Confidence 765443
No 102
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.79 E-value=0.59 Score=53.48 Aligned_cols=152 Identities=11% Similarity=0.081 Sum_probs=92.7
Q ss_pred hhhchhhhhHHHHHHhhcCCCC-H-hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHH
Q 003081 108 DALKPHLRLLIPKLVRFQYDPD-K-NVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADII 185 (850)
Q Consensus 108 ~~l~p~L~~lvp~L~r~~~Dp~-~-~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll 185 (850)
+.+.-...+++-+++.+...|. | .|-+-...++....++.+. -.+.++.++..++.+..+++..||.-+|.-++-+.
T Consensus 41 ~~f~~~flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpe-g~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~ 119 (885)
T COG5218 41 HEFSEEFLRVVNTILACKKNPSIPDRILSFLKRFFEYDMPDDPE-GEELVAGTFYHLLRGTESKDKKVRKRSLQILALLS 119 (885)
T ss_pred HhhHHHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCCChh-hhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHH
Confidence 3455556677777777777553 2 2333445555544444332 35678899999999999999999999999888776
Q ss_pred ccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchh
Q 003081 186 QGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVD 265 (850)
Q Consensus 186 ~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~ 265 (850)
..... .-+..+..++.++..-+=|..+.||..|...+..+... .++. -..+.+ ++-++++ .+++.
T Consensus 120 d~v~e-IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~--------~~ne--en~~~n-~l~~~vq---nDPS~ 184 (885)
T COG5218 120 DVVRE-IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEM--------ELNE--ENRIVN-LLKDIVQ---NDPSD 184 (885)
T ss_pred Hhcch-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc--------cCCh--HHHHHH-HHHHHHh---cCcHH
Confidence 64331 11223344555555444577788998887655544321 1111 112334 5555553 46788
Q ss_pred HHHHHHHHHH
Q 003081 266 SISKASIGVV 275 (850)
Q Consensus 266 evr~~a~~~L 275 (850)
|||..++.-+
T Consensus 185 EVRr~allni 194 (885)
T COG5218 185 EVRRLALLNI 194 (885)
T ss_pred HHHHHHHHHe
Confidence 9998876543
No 103
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.77 E-value=0.068 Score=53.61 Aligned_cols=131 Identities=11% Similarity=0.018 Sum_probs=84.9
Q ss_pred hhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCC
Q 003081 452 NSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASS 531 (850)
Q Consensus 452 ~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~ 531 (850)
..|..+..+++.++...+ ...+..+|.++....|+++.||..+.-++..+.... .-..-++++..+..++.|+
T Consensus 3 ~vR~n~i~~l~DL~~r~~----~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d---~ik~k~~l~~~~l~~l~D~ 75 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYP----NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILED---MIKVKGQLFSRILKLLVDE 75 (178)
T ss_pred HHHHHHHHHHHHHHHhCc----HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC---ceeehhhhhHHHHHHHcCC
Confidence 345455555565554444 445567788888889999999999888887766542 2233355555566778999
Q ss_pred CHHHHHHHHHHHHHHHHH-hCcchhhhHHHHHHHHHHhcC-----CCChhhHHHHHHHHHHHHH
Q 003081 532 SWSSKRKSAKAICKLGEI-LGESLSNYHHVLLESIMKEVP-----GRLWEGKDALLYAIGSIST 589 (850)
Q Consensus 532 s~~vr~~aa~alg~la~~-~g~~l~~~l~~llp~L~~~L~-----~r~~~gKe~vL~aL~~l~~ 589 (850)
++++|..|...+..+... .+..+..+++.++..|..... ....+-+..+++.+-....
T Consensus 76 ~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~ 139 (178)
T PF12717_consen 76 NPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFID 139 (178)
T ss_pred CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcC
Confidence 999999999999999987 445555445555444443322 1233445666666555543
No 104
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=96.72 E-value=1.3 Score=59.68 Aligned_cols=468 Identities=12% Similarity=0.119 Sum_probs=228.3
Q ss_pred cCCCCHhHHHHHHHHHHHhccCChHHHHHHH--HHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHH
Q 003081 125 QYDPDKNVQDAMAHIWKSLVADPKRTIDEHL--DLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWT 202 (850)
Q Consensus 125 ~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~--~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~ 202 (850)
..|+.|.+|-....-.+ . ..+.+. +..+..++..+.+..--.|+++...+|.+..+.+ -.+.+++.....
T Consensus 538 ia~~~~~i~~~v~~~l~---~----~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~-a~vl~~lr~~~l 609 (2341)
T KOG0891|consen 538 IADTDPDIRIRVLSSLN---E----RFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNP-AYVLPSLRKTLL 609 (2341)
T ss_pred ccCCCcchhhhHHhhhc---c----chhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccH-HHHhHHHHHHHH
Confidence 45888887776654332 1 112222 4455667788888888889999988888776655 234444443332
Q ss_pred HHHHHhc-cCcHHHHHHHHHH--HHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHH
Q 003081 203 AAFRAMD-DIKETVRTAGDKL--CRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLV 279 (850)
Q Consensus 203 ~l~~~ld-D~k~~VR~aA~~~--~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la 279 (850)
.+..=+. +. ..|.....+ +..+.....+...++ ....+..++|.+- +....+...+..+++.|+
T Consensus 610 ~~~s~l~~sg--~~r~~~~~a~~~~~~i~~~~~~i~~~------v~~~l~~~~~~~~-----~~~s~~~~~~~~~~~eL~ 676 (2341)
T KOG0891|consen 610 ELLTELEFSG--MARTKEESAKLLCELIISSPVLISPY------VGPILLVLLPKLQ-----DPSSGVEKAVLETIGELC 676 (2341)
T ss_pred HHhchhhhcc--hHHhHHHHHHHhhHHHHHHHHHHHhh------cCchHHHHHHHHh-----ccchhhHHHHHHHHHHHH
Confidence 2222111 22 224332221 122211111111222 1224455566543 234467778899999999
Q ss_pred HhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhc-cCCcHHHHHHHHHhhcChhhHhhH
Q 003081 280 KGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIA-KGSPMWDTLDLCINVVDTESLDQL 358 (850)
Q Consensus 280 ~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~-~~s~l~eal~~~~~~ld~~~l~~l 358 (850)
...|..++.++..+++.+...+.+......+-.. ...-.... ..++ ...++.+. +.+
T Consensus 677 ~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~as-------------lk~l~~l~s~~~~------~v~p~~~~---P~l 734 (2341)
T KOG0891|consen 677 AVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAA-------------LKALGQLESSTGY------VVDPYLDY---PEL 734 (2341)
T ss_pred HhccchhhhccchHHHHHHHHHHHhhhhhchhHH-------------HHHhhhhhcccce------EecccccC---hHH
Confidence 9999888888888888888877632211111000 00000000 0000 01122222 334
Q ss_pred HHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHH--HHhhhhcCcHH-HHHHHHHHHHHH-hhhCCHH
Q 003081 359 VPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLL--FPVVKEEKSAA-AKRAFASACASV-LKYATPS 434 (850)
Q Consensus 359 vp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~L--l~~l~~D~n~~-Vr~~~a~alg~L-~~~~~~~ 434 (850)
+..+...++...--..|.++.+.++. +| ...||.-...... .+......+.. -+..+-.++..= ....+-.
T Consensus 735 l~~l~~~~~te~~~~ir~~~v~~~g~----~g-~~d~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~p~v 809 (2341)
T KOG0891|consen 735 LDILINILKTEQSSTIRREAIRLLGL----LG-ALDPYKHKVTEGTSASKISSEQIKSDIDISLLESGVNPSNDEYYPAV 809 (2341)
T ss_pred HHHHHHHHhHhhhhHHHHHHHHHhhh----hc-ccchhHHHHHhhhhhHhhhhccccccchHHHHHhhhhhhhhhhhhHH
Confidence 44444444433222334455555542 22 3334433322222 22211111110 000000000000 0000000
Q ss_pred HHHHHHHHHHHhhcCCc---hhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChh
Q 003081 435 QAQKLIEETAALHIDDK---NSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRV 511 (850)
Q Consensus 435 ~v~~li~~l~~~~~~d~---~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~ 511 (850)
.+.. +.... .|+ .....+..++.-+....+..+..+.++++|.+...+.......+..+.......+.-...
T Consensus 810 ~I~~----l~~~l-~d~~~~~~l~~~~~a~~~i~~~~~~~~~l~l~qv~~~~~~~~r~~~~~~~~f~~~q~~~~~~~~~~ 884 (2341)
T KOG0891|consen 810 TIHA----LMGIL-KDPSLSIHHTAVAQAIMHIFQSLGLKCVLFLDQVIPTLIDVMRSCPPNLREFYFQQLTSLVAIVRQ 884 (2341)
T ss_pred HHHH----Hhhhh-hhhhhHHHHHHhhhchhHHHHhhccchhhhHHHHHHHHHHHHHhcCcchhHHHHHhhhhhhhccch
Confidence 0000 00000 121 223445566666666667778889999999877665543333333333333333333334
Q ss_pred hHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhc-CCCChhhHHHHHHHHHHHHHh
Q 003081 512 TLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEV-PGRLWEGKDALLYAIGSISTS 590 (850)
Q Consensus 512 ~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L-~~r~~~gKe~vL~aL~~l~~~ 590 (850)
.+++|.+.+...+...+. ++-.+.......+.++...++..|..+++..++..+..+ ..++ ..++.....+..+..
T Consensus 885 h~~~~~~~i~~~i~~~~~-~~~~l~~~~~~l~~~i~~~l~~~f~~~l~~~~~~~l~~~~~~~s-~~~~~~~~~~~~~~~- 961 (2341)
T KOG0891|consen 885 HIRPYMESIFTLIKDFWP-PDTSLQITIISLIEDIAVALGGEFKKYLPELLPTMLTVLQHDKS-KDRVVSRKVLQSLQK- 961 (2341)
T ss_pred hHhhhhhhHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhccchheeeccccc-chHHHHHHhhHHHHh-
Confidence 677888888888777654 333455555667778888888999999999998877777 2222 122222222222211
Q ss_pred cccccccCCCCchHHHHHHHHHHHhhc--CHHHHHHHHHHHHHHHHHcCCc-hhHHhHHHHHHhh
Q 003081 591 CHKDISAEDPTTPFAIVDMVSSACRKK--IKKYREAAFSCLEQVIKAFRDP-KFFNIIFPLLFEM 652 (850)
Q Consensus 591 ~~~~l~~~~~~~~~~i~~~l~~e~~r~--~~~~R~~Al~~Lg~l~~~~~~~-~~~~iv~~~l~~~ 652 (850)
.+..+ ..+.+.+.+.+++.+.+. ....|..+..+.+.+....... ....+.+|.+..+
T Consensus 962 ~~~~~----~~~~hl~~~~~vkl~~~~~~~~~~~~~~l~t~~~l~~~~~~~~~~s~i~~~~~r~l 1022 (2341)
T KOG0891|consen 962 FGSNL----EQYLHLLLPPIVKLFEDPTVPLSIRKSALITIGRLAQQVDLSEYASRIIHPLVRVL 1022 (2341)
T ss_pred cCccH----HhhHhhhccHHHHHHhhhhhhHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence 11111 124456677777777765 4566777777777776665432 2355555554444
No 105
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.63 E-value=0.085 Score=63.04 Aligned_cols=176 Identities=10% Similarity=0.140 Sum_probs=132.8
Q ss_pred hhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHH-------------HHHHHHHHHHHHHhhCCCChhHHHHHHHHH
Q 003081 115 RLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTI-------------DEHLDLIFDDLLIQSGSRLWRSREASCLSL 181 (850)
Q Consensus 115 ~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i-------------~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al 181 (850)
..+--+|+-...+|+ +-..+.+.+..+++|.+... ..+|-.|+|.+.+++....--+|..=..|+
T Consensus 814 ~~ia~klld~Ls~~~--~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~L 891 (1030)
T KOG1967|consen 814 SEIAEKLLDLLSGPS--TGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEAL 891 (1030)
T ss_pred chHHHHHHHhcCCcc--ccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHH
Confidence 356666766677754 44566667777777754311 446788999999998755556677778899
Q ss_pred HHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCC
Q 003081 182 ADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGIL 261 (850)
Q Consensus 182 ~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~ 261 (850)
..++...|.+.+.|.++.++|.++..++=....||-.+..++..+.... . .--.+.+..++|.++. +.
T Consensus 892 shVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~----~------tL~t~~~~Tlvp~lLs--ls 959 (1030)
T KOG1967|consen 892 SHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTES----E------TLQTEHLSTLVPYLLS--LS 959 (1030)
T ss_pred HHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhc----c------ccchHHHhHHHHHHHh--cC
Confidence 9999998999999999999999999998777788888776665543211 0 1234578899999984 44
Q ss_pred Cc----hhHHHHHHHHHHHHHHH-hcCcccccchHHHHHHHHHhcccc
Q 003081 262 SK----VDSISKASIGVVMKLVK-GAGIAIRPHLSDLVSCMLESLSSL 304 (850)
Q Consensus 262 s~----~~evr~~a~~~L~~la~-~~g~~l~P~lp~Lvp~LL~~Ls~~ 304 (850)
++ .--||..|++++..+.+ ...+.+-||-|+++..+...|.+.
T Consensus 960 ~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk 1007 (1030)
T KOG1967|consen 960 SDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK 1007 (1030)
T ss_pred CCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH
Confidence 32 25799999999999999 567889999999999999999754
No 106
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.61 E-value=0.0031 Score=43.59 Aligned_cols=30 Identities=10% Similarity=0.227 Sum_probs=26.4
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 003081 520 IVSLICEGIASSSWSSKRKSAKAICKLGEI 549 (850)
Q Consensus 520 Il~ll~~~L~d~s~~vr~~aa~alg~la~~ 549 (850)
|++.+.+.++|++|.||.+|+.++|.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578888999999999999999999999874
No 107
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.53 E-value=2 Score=48.34 Aligned_cols=103 Identities=15% Similarity=0.071 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCC-----ChhhHHHHHHHHHHHHHhcccccccCCCCchHHHH
Q 003081 533 WSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGR-----LWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIV 607 (850)
Q Consensus 533 ~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r-----~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~ 607 (850)
..||..|..++|.+...+.....+-...++..-+..+-.+ ...+|-.+..+++.++.+- .+.-++.+..+++.
T Consensus 498 dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~--a~~lq~~~wA~~~F 575 (728)
T KOG4535|consen 498 DKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNP--ALPLQTAPWASQAF 575 (728)
T ss_pred hhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCc--cccccCCCchHHHH
Confidence 5799999999999988765444444455555444444222 3566778899999998643 33234566777777
Q ss_pred HHHHHHHhh-cCHHHHHHHHHHHHHHHHHcC
Q 003081 608 DMVSSACRK-KIKKYREAAFSCLEQVIKAFR 637 (850)
Q Consensus 608 ~~l~~e~~r-~~~~~R~~Al~~Lg~l~~~~~ 637 (850)
+++..-... +|-++|..|...|....+..+
T Consensus 576 ~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~ 606 (728)
T KOG4535|consen 576 NALTSLVTSCKNFKVRIRAAAALSVPGKREQ 606 (728)
T ss_pred HHHHHHHHHhccceEeehhhhhhcCCCCccc
Confidence 766544433 678899999888876554443
No 108
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.51 E-value=0.94 Score=50.76 Aligned_cols=278 Identities=13% Similarity=0.090 Sum_probs=151.6
Q ss_pred CchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhh-----hCCHHHHHHHHHH---H
Q 003081 372 LNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLK-----YATPSQAQKLIEE---T 443 (850)
Q Consensus 372 ~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~-----~~~~~~v~~li~~---l 443 (850)
.+.|..|.+++..++++++ -.+-|.-++.+.+-.++ .|..+++....+..+..+.. ..|+..-..+..- +
T Consensus 269 s~~rle~~qvl~~~a~~~~-~~~~~~~~l~RvI~~~~-~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~ 346 (728)
T KOG4535|consen 269 SPMRLEALQVLTLLARYFS-MTQAYLMELGRVICKCM-GEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWT 346 (728)
T ss_pred chhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccC-CCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHH
Confidence 4578899999999988876 34567778888888887 68889998888776644432 2222111111000 0
Q ss_pred HHhhc--CC-------chhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchH-HHHHHHHHHHHhc--CCChh
Q 003081 444 AALHI--DD-------KNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKY-VSDLFEELWEENT--SGDRV 511 (850)
Q Consensus 444 ~~~~~--~d-------~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~-v~~~~~~v~~~l~--~~~~~ 511 (850)
..... ++ +.-..+.++.+..|....-..|.+-.....|.+..|..|..+. ++..+.......+ ++. +
T Consensus 347 ~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~l-r 425 (728)
T KOG4535|consen 347 MMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCL-R 425 (728)
T ss_pred HHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccch-h
Confidence 00100 11 1113345555555544333334333335666655666653332 3333222221111 222 3
Q ss_pred hHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchh---hh----HHHHHHHHH----HhcCCCChhhHHHH
Q 003081 512 TLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLS---NY----HHVLLESIM----KEVPGRLWEGKDAL 580 (850)
Q Consensus 512 ~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~---~~----l~~llp~L~----~~L~~r~~~gKe~v 580 (850)
...-+...-...+...+.|.+...|..++-++|.+...+-..+. .+ ...++..+. .+-.++ ..+|...
T Consensus 426 ~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~-dkV~~na 504 (728)
T KOG4535|consen 426 QDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADK-DKVKSNA 504 (728)
T ss_pred hhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHH
Confidence 45566677777788888999999999999999988876433221 12 222222222 222222 3578888
Q ss_pred HHHHHHHHHhcccccccCCCC-chHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcC----CchhHHhHHHHHHhhc
Q 003081 581 LYAIGSISTSCHKDISAEDPT-TPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFR----DPKFFNIIFPLLFEMC 653 (850)
Q Consensus 581 L~aL~~l~~~~~~~l~~~~~~-~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~----~~~~~~iv~~~l~~~~ 653 (850)
+++|+.+.+-...-....... .-..+.+-+.++..+.+.++|=-|+-.+|.+.+.-. +.+...+++|.|..+.
T Consensus 505 vraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv 582 (728)
T KOG4535|consen 505 VRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLV 582 (728)
T ss_pred HHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHH
Confidence 888887765433111100000 112233444455556677888888888998877532 2345666666666554
No 109
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.46 E-value=0.021 Score=56.68 Aligned_cols=94 Identities=15% Similarity=0.087 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH-hCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhccccc
Q 003081 517 LGEIVSLICEGIASSSWSSKRKSAKAICKLGEI-LGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDI 595 (850)
Q Consensus 517 l~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~-~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l 595 (850)
....++++.+.+......-+-.|..++.++... .++.+.|.+|++++.|.++|+.|+.+....+|++|..++.... .+
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~-~v 114 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSD-MV 114 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh-hh
Confidence 345677888888888888899999999999998 6678999999999999999999999999999999999965432 22
Q ss_pred ccCCCCchHHHHHHHH
Q 003081 596 SAEDPTTPFAIVDMVS 611 (850)
Q Consensus 596 ~~~~~~~~~~i~~~l~ 611 (850)
.....||..+++|.+.
T Consensus 115 G~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 115 GEALVPYYRQLLPVLN 130 (183)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 2223467888888776
No 110
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.41 E-value=0.18 Score=57.31 Aligned_cols=194 Identities=12% Similarity=-0.027 Sum_probs=114.0
Q ss_pred HHHHhhhcCCc-hHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHH
Q 003081 63 LCNLANEMGQP-DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWK 141 (850)
Q Consensus 63 l~~lA~~~g~p-~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~ 141 (850)
.+.++-.-++. ..+-.+........ -.-|.+++-+|+.|-. ++..+.|.....|++|.||.+......
T Consensus 74 ~aa~al~~~~~~~~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~----------~~a~~~L~~~L~~~~p~vR~aal~al~ 142 (410)
T TIGR02270 74 CAALALLAQEDALDLRSVLAVLQAGP-EGLCAGIQAALGWLGG----------RQAEPWLEPLLAASEPPGRAIGLAALG 142 (410)
T ss_pred HHHHHHhccCChHHHHHHHHHhcCCC-HHHHHHHHHHHhcCCc----------hHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 45555554443 44777777665542 4567888888875432 224555555569999999998875444
Q ss_pred HhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHH
Q 003081 142 SLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDK 221 (850)
Q Consensus 142 ~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~ 221 (850)
....+ -.+.+...++|.++.||..++.++|.+-.... .+.+...++|.++.||.+|..
T Consensus 143 ~r~~~-----------~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a-----------~~~L~~al~d~~~~VR~aA~~ 200 (410)
T TIGR02270 143 AHRHD-----------PGPALEAALTHEDALVRAAALRALGELPRRLS-----------ESTLRLYLRDSDPEVRFAALE 200 (410)
T ss_pred hhccC-----------hHHHHHHHhcCCCHHHHHHHHHHHHhhccccc-----------hHHHHHHHcCCCHHHHHHHHH
Confidence 42222 23456666779999999999999999854322 222345589999999999876
Q ss_pred HHHHHHH-----HHHHhhhcccCcch--hHHhHH-----HHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccc
Q 003081 222 LCRSVTS-----LTIRLCDVTLTEIS--DARQSM-----DIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPH 289 (850)
Q Consensus 222 ~~~~L~~-----~~~r~~~~~~~~~~--~~~~~l-----~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~ 289 (850)
.+..++. .+++..... +.+. ....++ +..++.|.. +.. .+.+|..++.+++.+ |
T Consensus 201 al~~lG~~~A~~~l~~~~~~~-g~~~~~~l~~~lal~~~~~a~~~L~~--ll~-d~~vr~~a~~AlG~l----g------ 266 (410)
T TIGR02270 201 AGLLAGSRLAWGVCRRFQVLE-GGPHRQRLLVLLAVAGGPDAQAWLRE--LLQ-AAATRREALRAVGLV----G------ 266 (410)
T ss_pred HHHHcCCHhHHHHHHHHHhcc-CccHHHHHHHHHHhCCchhHHHHHHH--Hhc-ChhhHHHHHHHHHHc----C------
Confidence 6544421 122211111 1000 000011 123444431 222 244888888888876 2
Q ss_pred hHHHHHHHHHhccc
Q 003081 290 LSDLVSCMLESLSS 303 (850)
Q Consensus 290 lp~Lvp~LL~~Ls~ 303 (850)
-|..++.|++.+.+
T Consensus 267 ~p~av~~L~~~l~d 280 (410)
T TIGR02270 267 DVEAAPWCLEAMRE 280 (410)
T ss_pred CcchHHHHHHHhcC
Confidence 24668888888864
No 111
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.35 E-value=3.5 Score=49.17 Aligned_cols=86 Identities=17% Similarity=0.219 Sum_probs=61.6
Q ss_pred hhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHH
Q 003081 123 RFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWT 202 (850)
Q Consensus 123 r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~ 202 (850)
..++..++..|+...-+.+-+.. +.+-.--+...|.+-++.++.++|-+|..+|..++.+.-...++.|+.+.
T Consensus 71 KlfQskd~~LRr~vYl~Ikels~-----isedviivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~iery~kqa-- 143 (865)
T KOG1078|consen 71 KLFQSKDVSLRRMVYLAIKELSK-----ISEDVIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIERYMKQA-- 143 (865)
T ss_pred HHHhhcCHHHHHHHHHHHhhccc-----cchhhhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHHHHHHHHhH--
Confidence 33577777888888777776653 22223334566666688889999999999999999887766777777763
Q ss_pred HHHHHhccCcHHHHHHHH
Q 003081 203 AAFRAMDDIKETVRTAGD 220 (850)
Q Consensus 203 ~l~~~ldD~k~~VR~aA~ 220 (850)
.-|..+.|+.+|.
T Consensus 144 -----ivd~~~avSsaal 156 (865)
T KOG1078|consen 144 -----IVDKNPAVSSAAL 156 (865)
T ss_pred -----eeccccccchHHH
Confidence 4567777777654
No 112
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.27 E-value=1.1 Score=48.74 Aligned_cols=136 Identities=13% Similarity=0.216 Sum_probs=93.5
Q ss_pred hcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccch---------HHHHHHHHHHhhhhcCcHHHHHH
Q 003081 349 VVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPY---------TSMLLRLLFPVVKEEKSAAAKRA 419 (850)
Q Consensus 349 ~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py---------~~~lL~~Ll~~l~~D~n~~Vr~~ 419 (850)
.+|.+.-.+.++.+...++.+ ..+.|..|.+++.++...+|..+-+. ...+++.+...+ ++.++.++..
T Consensus 56 Lld~~~a~~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~ 133 (298)
T PF12719_consen 56 LLDKELAKEHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFL-DSENPELQAI 133 (298)
T ss_pred HhChHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHH-hcCCHHHHHH
Confidence 345555567778888888654 66788999999999999888554322 336888999998 6679999999
Q ss_pred HHHHHHHHhhhCCHHHHHHHHHHHHHhhc-----CCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHH
Q 003081 420 FASACASVLKYATPSQAQKLIEETAALHI-----DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFIS 486 (850)
Q Consensus 420 ~a~alg~L~~~~~~~~v~~li~~l~~~~~-----~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~ 486 (850)
++.+++.|+-...-....+++..+.-.|+ ++...|++-+.++..++...+.+-......++|.+...
T Consensus 134 a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~ 205 (298)
T PF12719_consen 134 AVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTL 205 (298)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 99999887643221112345556666664 23345777788888887766655555667777876543
No 113
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=96.24 E-value=0.12 Score=51.02 Aligned_cols=142 Identities=16% Similarity=0.120 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHH
Q 003081 154 HLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIK-ETVRTAGDKLCRSVTSLTIR 232 (850)
Q Consensus 154 ~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k-~~VR~aA~~~~~~L~~~~~r 232 (850)
.++....-+.+.+.+++++.|-.++.-+.-+++..+++.+..+....+..++..+.... ..+++++. .++..++.+
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai---~~L~~l~~~ 98 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAI---ITLTRLFDL 98 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH---HHHHHHHHH
Confidence 45556666777888999999999988888888888788888888888888888886533 34566554 444444432
Q ss_pred hhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhc
Q 003081 233 LCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESL 301 (850)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~L 301 (850)
...-.....+...+.+..+++.+++ +.++ ..+...++.++..+.+.....++||..++-..++..+
T Consensus 99 ~~~~p~l~Rei~tp~l~~~i~~ll~--l~~~-~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 99 IRGKPTLTREIATPNLPKFIQSLLQ--LLQD-SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred hcCCCchHHHHhhccHHHHHHHHHH--HHhc-cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 2211111223334456666666663 3332 4667789999999999999999999998888777654
No 114
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.13 E-value=0.54 Score=56.18 Aligned_cols=219 Identities=14% Similarity=0.150 Sum_probs=118.2
Q ss_pred CCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHH
Q 003081 261 LSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMW 340 (850)
Q Consensus 261 ~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~ 340 (850)
.++..++|.+++..+..+++.-.+.=.-....++..+++.+.+.++ |++.++-+
T Consensus 737 ~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkdeds----yvyLnaI~---------------------- 790 (982)
T KOG4653|consen 737 HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDS----YVYLNAIR---------------------- 790 (982)
T ss_pred cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCc----eeeHHHHH----------------------
Confidence 3445678888888888888743322222334566677777765432 33322210
Q ss_pred HHHHHHHhhcChhhHhhHHHHHHHHH---hcc--CCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHH
Q 003081 341 DTLDLCINVVDTESLDQLVPHLARLV---RSG--IGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAA 415 (850)
Q Consensus 341 eal~~~~~~ld~~~l~~lvp~L~~~l---k~~--~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~ 415 (850)
++-.++..-+ +.++|.+.+.- ++. ....-|+| .++..++++.|.-+..|.+.++.++++++ +|+...
T Consensus 791 -gv~~Lcevy~----e~il~dL~e~Y~s~k~k~~~d~~lkVG--Eai~k~~qa~Gel~~~y~~~Li~tfl~gv-repd~~ 862 (982)
T KOG4653|consen 791 -GVVSLCEVYP----EDILPDLSEEYLSEKKKLQTDYRLKVG--EAILKVAQALGELVFKYKAVLINTFLSGV-REPDHE 862 (982)
T ss_pred -HHHHHHHhcc----hhhHHHHHHHHHhcccCCCccceehHH--HHHHHHHHHhccHHHHHHHHHHHHHHHhc-CCchHH
Confidence 1111222222 23555555422 111 12233445 88889999999999999999999999999 577666
Q ss_pred HHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHH
Q 003081 416 AKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVS 495 (850)
Q Consensus 416 Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~ 495 (850)
-|.+...++|.++... +...++.|......++. ..+.|...-+|
T Consensus 863 ~RaSS~a~lg~Lcq~~---------------------------------a~~vsd~~~ev~~~Il~---l~~~d~s~~vR 906 (982)
T KOG4653|consen 863 FRASSLANLGQLCQLL---------------------------------AFQVSDFFHEVLQLILS---LETTDGSVLVR 906 (982)
T ss_pred HHHhHHHHHHHHHHHH---------------------------------hhhhhHHHHHHHHHHHH---HHccCCchhhH
Confidence 6777767777766321 11112222222222222 22445555566
Q ss_pred HHHHHHHHHhcCCChhhHHh----hHHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHH
Q 003081 496 DLFEELWEENTSGDRVTLQL----YLGEIVSLICEGI-ASSSWSSKRKSAKAICKLGEI 549 (850)
Q Consensus 496 ~~~~~v~~~l~~~~~~~i~~----yl~eIl~ll~~~L-~d~s~~vr~~aa~alg~la~~ 549 (850)
..+..+..++..|++..+-| |+-+....+.... .+++-.+|--|..++..+-..
T Consensus 907 RaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~ 965 (982)
T KOG4653|consen 907 RAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAA 965 (982)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Confidence 66666666666665543333 3333333333332 334445666666665555443
No 115
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.11 E-value=1.2 Score=48.81 Aligned_cols=214 Identities=15% Similarity=0.128 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCC-chhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHH
Q 003081 153 EHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRK-FDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTI 231 (850)
Q Consensus 153 ~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~-~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~ 231 (850)
+.++.-|.+.+..+.++.-..|+++..++.+++..+. .+.+..+...|+..+.+.+.-.+. ++. ..+++.++-.++
T Consensus 39 ~~~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~--~E~-~lA~~~l~Ll~l 115 (309)
T PF05004_consen 39 EDLEDKLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKS--EEQ-ALAARALALLAL 115 (309)
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCH--HHH-HHHHHHHHHHhh
Confidence 3455557778888889999999999999999997644 456778888899998888865544 222 122333333333
Q ss_pred HhhhcccCcchhHHhHHHHhHHHHhhccCCC--chhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhh
Q 003081 232 RLCDVTLTEISDARQSMDIVLPFLLAEGILS--KVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGL 309 (850)
Q Consensus 232 r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s--~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~ 309 (850)
.. |......+++..+.|.|.. -+.+ ....+|..++.+|+-++-.++.... -+..
T Consensus 116 tl-----g~g~~~~ei~~~~~~~L~~-~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~-----~~~~------------- 171 (309)
T PF05004_consen 116 TL-----GAGEDSEEIFEELKPVLKR-ILTDSSASPKARAACLEALAICTFVGGSDEE-----ETEE------------- 171 (309)
T ss_pred hc-----CCCccHHHHHHHHHHHHHH-HHhCCccchHHHHHHHHHHHHHHHhhcCChh-----HHHH-------------
Confidence 22 1112355678888887763 2333 3456777777787766543333200 0000
Q ss_pred hHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHh--h--cChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHH
Q 003081 310 NYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCIN--V--VDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLL 385 (850)
Q Consensus 310 nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~--~--ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L 385 (850)
.|+.++.+.. + .+.. .|. +..........+|.+.++.|
T Consensus 172 -----------------------------~~~~le~if~~~~~~~~~~-----~~~----~~~~~~~~l~~aAL~aW~lL 213 (309)
T PF05004_consen 172 -----------------------------LMESLESIFLLSILKSDGN-----APV----VAAEDDAALVAAALSAWALL 213 (309)
T ss_pred -----------------------------HHHHHHHHHHHHhcCcCCC-----ccc----ccCCCccHHHHHHHHHHHHH
Confidence 0111211100 0 0000 000 00000112345677777777
Q ss_pred HHHhcc-cccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCC
Q 003081 386 VQKIGM-DIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYAT 432 (850)
Q Consensus 386 ~~~~~~-~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~ 432 (850)
++.++. .+..+....++.+...| +..+..||.++..+++-+.+...
T Consensus 214 lt~~~~~~~~~~~~~~~~~l~~lL-~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 214 LTTLPDSKLEDLLEEALPALSELL-DSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhh
Confidence 766654 35566777888888888 67789999999999988876543
No 116
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.99 E-value=0.43 Score=53.72 Aligned_cols=138 Identities=15% Similarity=0.177 Sum_probs=91.8
Q ss_pred hhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccc
Q 003081 515 LYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKD 594 (850)
Q Consensus 515 ~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~ 594 (850)
+-+..++..+.....||+..+|+.|+.+||..+.-.++....|.+.++..++.+|-+.. -++.+++++..+..-.+..
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~--~~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDL--NEEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHhh
Confidence 34556666777778899999999999999999988888888999999999999995432 1566666665554333221
Q ss_pred cccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCc---hhHHhH----HHHHHhhcc
Q 003081 595 ISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDP---KFFNII----FPLLFEMCG 654 (850)
Q Consensus 595 l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~~~---~~~~iv----~~~l~~~~~ 654 (850)
-..+-.+|.-.|.--+..-.+..+++.|..|+..+|.++.--+.+ .|.+.+ .|++..+.+
T Consensus 332 ~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d 398 (533)
T KOG2032|consen 332 SNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQD 398 (533)
T ss_pred hhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCC
Confidence 111112333333333344455678899999999999998876532 234333 355555543
No 117
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=95.96 E-value=0.63 Score=49.33 Aligned_cols=194 Identities=10% Similarity=0.037 Sum_probs=113.5
Q ss_pred hHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhchhhh--hHHHHHHhhcCCCCHhHHHHHHHHHHHhccCC--hH
Q 003081 74 DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLR--LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADP--KR 149 (850)
Q Consensus 74 ~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L~--~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~--~~ 149 (850)
+-+.+++.+.+.+.+...++-|.++++....-. .-+..+. ..+|.+-....||+|.||..+..+...+..+. ..
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~--~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~ 89 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFP--FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQE 89 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh--hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHH
Confidence 445777777766555667777778887764322 1111222 35677777789999999998888888777554 24
Q ss_pred HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Q 003081 150 TIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSL 229 (850)
Q Consensus 150 ~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~ 229 (850)
.+..|.+.+++.+...- -+..++.++..+|.++.-. +.+...+...++.+++++....+.+|..+.+++..|+.-
T Consensus 90 ~Ik~~i~~Vc~~~~s~~--lns~~Q~agLrlL~nLtv~---~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 90 QIKMYIPQVCEETVSSP--LNSEVQLAGLRLLTNLTVT---NDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHccCCC---cchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence 56778888887776642 2347888888888887432 222233334455556667666677887777666655421
Q ss_pred HHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCc
Q 003081 230 TIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGI 284 (850)
Q Consensus 230 ~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~ 284 (850)
+..+..--..+.+..++.++- .+...++--.++..+.+|.+..++
T Consensus 165 ------p~~~~~Ll~~q~~~~~~~Lf~----~~~~~~~l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 165 ------PDMTRELLSAQVLSSFLSLFN----SSESKENLLRVLTFFENINENIKK 209 (254)
T ss_pred ------HHHHHHHHhccchhHHHHHHc----cCCccHHHHHHHHHHHHHHHhhCc
Confidence 110000001112333333221 123456666677777777666543
No 118
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.96 E-value=4.9 Score=47.24 Aligned_cols=129 Identities=14% Similarity=0.118 Sum_probs=95.4
Q ss_pred HHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhC--cchhh----hHHHHHHHHHHhcC
Q 003081 497 LFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILG--ESLSN----YHHVLLESIMKEVP 570 (850)
Q Consensus 497 ~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g--~~l~~----~l~~llp~L~~~L~ 570 (850)
.|.--++++.||. -++.| ..+.+.|++.+..+|-+-..+.+.++...- +.+.. .++.++..|.+.+.
T Consensus 284 lFl~kls~l~p~i--~lrq~-----~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~ 356 (1128)
T COG5098 284 LFLNKLSELSPGI--MLRQY-----EHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLS 356 (1128)
T ss_pred HHHHHHhhcCchH--HHHHH-----HHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhh
Confidence 3444455565553 23332 445667889999999988888888886542 22333 47778889999998
Q ss_pred CCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcC
Q 003081 571 GRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFR 637 (850)
Q Consensus 571 ~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~ 637 (850)
+..+-.|-++++.+..++.-... .+.-.+.+...+.+...++...+|+.|++.+.+++-.-|
T Consensus 357 D~~py~RtKalqv~~kifdl~sk-----~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 357 DTYPYTRTKALQVLEKIFDLNSK-----TVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred ccchHHHHHHHHHHHHHHhCccc-----ccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 88888999999999988853332 334567888888999999999999999999999887655
No 119
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=5.5 Score=47.27 Aligned_cols=126 Identities=14% Similarity=0.094 Sum_probs=76.5
Q ss_pred chhhhhhhHhhHhHHH-HHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCCCH-HHHHHHHHHHHH
Q 003081 468 ASDVLSGYHAVIVPVI-FISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSW-SSKRKSAKAICK 545 (850)
Q Consensus 468 ~~~~f~~~~~~vlP~l-~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~-~vr~~aa~alg~ 545 (850)
.+++++.....+.|++ |+..++-.+-.++.+ ++.+..+- ....+.+....|.+++.+++.++.- .--..++-++..
T Consensus 631 ~p~vLk~le~slypvi~Filkn~i~dfy~Ea~-dildg~tf-~skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~n 708 (970)
T COG5656 631 RPLVLKYLEVSLYPVISFILKNEISDFYQEAL-DILDGYTF-MSKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDN 708 (970)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHhhhhH-HHHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHH
Confidence 4667777777778876 444554332233332 33332221 1235667788899999999888763 344455677888
Q ss_pred HHHHhCcchhh---hHHHHHHHHHHhcCCCC--hhhHHHHHHHHHHHHHhccccc
Q 003081 546 LGEILGESLSN---YHHVLLESIMKEVPGRL--WEGKDALLYAIGSISTSCHKDI 595 (850)
Q Consensus 546 la~~~g~~l~~---~l~~llp~L~~~L~~r~--~~gKe~vL~aL~~l~~~~~~~l 595 (850)
+....+..+.. |...+..++..++.... -+-.+.+++-.-.++.+.++.+
T Consensus 709 fityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~L 763 (970)
T COG5656 709 FITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDEL 763 (970)
T ss_pred HHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchh
Confidence 87766666643 45666677778885432 2456667776767776666544
No 120
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.75 E-value=0.42 Score=55.87 Aligned_cols=206 Identities=20% Similarity=0.192 Sum_probs=123.1
Q ss_pred HHHHHHHhhhcCCch-HHHHHHHHhc-------cchhhhhhhhHH-hhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCH
Q 003081 60 YKELCNLANEMGQPD-LIYKFMDLAN-------YQVSLNSKRGAA-FGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDK 130 (850)
Q Consensus 60 yk~l~~lA~~~g~p~-lv~~fm~la~-------~~~~w~sr~gAa-~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~ 130 (850)
|+.+++=+-+++..+ +--.|....+ +.. ...|=-.+ -.|-.=+..... =+..+..++-.|+|..--|+.
T Consensus 22 ~~kl~~k~~em~t~~~F~eeflr~vn~il~vkKres-i~dRIl~fla~fv~sl~q~d~-e~DlV~~~f~hlLRg~Eskdk 99 (892)
T KOG2025|consen 22 YSKLLAKVMEMLTAHEFSEEFLRVVNYILLVKKRES-IPDRILSFLARFVESLPQLDK-EEDLVAGTFYHLLRGTESKDK 99 (892)
T ss_pred HHHHHHHHHHhhhHhhhHHHHHHHHHHheeeccCCC-cHHHHHHHHHHHHHhhhccCc-hhhHHHHHHHHHHhcccCcch
Confidence 899999999988873 4444554443 222 22221111 111111122211 112577889999999999999
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchh--hhHHHHHHHHHHHHHh
Q 003081 131 NVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQ--VGKHLRRIWTAAFRAM 208 (850)
Q Consensus 131 ~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~--l~~~L~~i~~~l~~~l 208 (850)
.||.-.+.|...++..-...-+.-|+.+...++..+.|+++-||--|..||..+-....-++ +.+-|..+ .-
T Consensus 100 ~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~l------iq 173 (892)
T KOG2025|consen 100 KVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECPVVNLLKDL------IQ 173 (892)
T ss_pred hHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHHH------Hh
Confidence 99999999999988543333355689999999999999999999999999988743222222 22222222 24
Q ss_pred ccCcHHHHHHHHHHHH----HHHHHHHHhhhcccCcchhHHhHHHHhHHH-------------HhhccCCCchhHHHHHH
Q 003081 209 DDIKETVRTAGDKLCR----SVTSLTIRLCDVTLTEISDARQSMDIVLPF-------------LLAEGILSKVDSISKAS 271 (850)
Q Consensus 209 dD~k~~VR~aA~~~~~----~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~-------------Ll~~gL~s~~~evr~~a 271 (850)
.|+.+.||.+|..-+. ++..++-|..|..... -.-+-..++|- |++.|+.+....|++.+
T Consensus 174 nDpS~EVRRaaLsnI~vdnsTlp~IveRarDV~~an---RrlvY~r~lpkid~r~lsi~krv~LlewgLnDRe~sVk~A~ 250 (892)
T KOG2025|consen 174 NDPSDEVRRAALSNISVDNSTLPCIVERARDVSGAN---RRLVYERCLPKIDLRSLSIDKRVLLLEWGLNDREFSVKGAL 250 (892)
T ss_pred cCCcHHHHHHHHHhhccCcccchhHHHHhhhhhHHH---HHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhHHHHHH
Confidence 7999999999865442 2233333332221100 00011222222 23468888777788776
Q ss_pred HHHHH
Q 003081 272 IGVVM 276 (850)
Q Consensus 272 ~~~L~ 276 (850)
...+.
T Consensus 251 ~d~il 255 (892)
T KOG2025|consen 251 VDAIL 255 (892)
T ss_pred HHHHH
Confidence 66543
No 121
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.75 E-value=4 Score=48.01 Aligned_cols=244 Identities=11% Similarity=0.053 Sum_probs=134.1
Q ss_pred hHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHH-HHHHHHHHHHhhcCCchh--hHHHHHHHHHHHhhchhhh
Q 003081 396 YTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQ-AQKLIEETAALHIDDKNS--QISCAILLKSYSSVASDVL 472 (850)
Q Consensus 396 y~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~-v~~li~~l~~~~~~d~~~--r~~~~~~l~al~~~~~~~f 472 (850)
|.+.+-+.|+++ +....||+.+|-++-++.|..+|-. .....+++..++. |.+. -.++..++.+|+++.++.+
T Consensus 147 ~~~DI~KlLvS~---~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~-D~~~gv~ta~~sLi~~lvk~~p~~y 222 (938)
T KOG1077|consen 147 FADDIPKLLVSG---SSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLD-DQHMGVVTAATSLIEALVKKNPESY 222 (938)
T ss_pred hhhhhHHHHhCC---cchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhC-ccccceeeehHHHHHHHHHcCCHHH
Confidence 445555555554 4567899999999999999876543 3356677777764 3333 3567788899999998877
Q ss_pred hhhHhhHhHHH-HHHh-cC-----------CchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCC--CHHH--
Q 003081 473 SGYHAVIVPVI-FISR-FE-----------DDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASS--SWSS-- 535 (850)
Q Consensus 473 ~~~~~~vlP~l-~~~~-~d-----------~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~--s~~v-- 535 (850)
+..+..-+.-+ .+.. ++ +.|.+.-....++.-....-....+.-+.++++-++...+++ +-++
T Consensus 223 k~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~ 302 (938)
T KOG1077|consen 223 KTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQH 302 (938)
T ss_pred hhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHh
Confidence 66554433322 1211 11 233333333344433322222233444455555554444421 1112
Q ss_pred ---HHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHH
Q 003081 536 ---KRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSS 612 (850)
Q Consensus 536 ---r~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~ 612 (850)
+.+...-.-.++..+.+. ...+..-+..|-+-+..|+.+.|=-.|+.+..++.... .. +.+..=...++.
T Consensus 303 ~na~naVLFeaI~l~~h~D~e-~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~-s~-----davK~h~d~Ii~ 375 (938)
T KOG1077|consen 303 SNAKNAVLFEAISLAIHLDSE-PELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEF-SI-----DAVKKHQDTIIN 375 (938)
T ss_pred hhhHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccc-hH-----HHHHHHHHHHHH
Confidence 222222222233333322 12355666677777788888889888888888876421 11 001111334555
Q ss_pred HHh-hcCHHHHHHHHHHHHHHHHHcCCchhHHhHHHHHH
Q 003081 613 ACR-KKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLF 650 (850)
Q Consensus 613 e~~-r~~~~~R~~Al~~Lg~l~~~~~~~~~~~iv~~~l~ 650 (850)
.++ .++..+|+.|+..|-.++..-+...+++-+..+|.
T Consensus 376 sLkterDvSirrravDLLY~mcD~~Nak~IV~elLqYL~ 414 (938)
T KOG1077|consen 376 SLKTERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYLE 414 (938)
T ss_pred HhccccchHHHHHHHHHHHHHhchhhHHHHHHHHHHHHh
Confidence 555 57889999999988887765443344444444443
No 122
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.73 E-value=1.1 Score=49.04 Aligned_cols=185 Identities=14% Similarity=0.050 Sum_probs=117.5
Q ss_pred hhhhhhHHhhHHHHHHH--hhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccC--ChHHHHHHHHHHHHHHHH
Q 003081 89 LNSKRGAAFGFSKIAKQ--AGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVAD--PKRTIDEHLDLIFDDLLI 164 (850)
Q Consensus 89 w~sr~gAa~gl~~I~~~--~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d--~~~~i~~~~~~Il~~Ll~ 164 (850)
-..|.++.-++-.++.. ..+.+..+...|+..+.++..=..+.=+..+.++...++-- +....++.|+.+.|.|..
T Consensus 57 ~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~ 136 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKR 136 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHH
Confidence 35677777788766644 24667777788999999988777776666677777766522 223456778888888877
Q ss_pred hhCCCC--hhHHHHHHHHHHH--HHccCCchhhh---HHHHHHHHHHHHHhccC--------cHHHHHHHHHHHHHHHHH
Q 003081 165 QSGSRL--WRSREASCLSLAD--IIQGRKFDQVG---KHLRRIWTAAFRAMDDI--------KETVRTAGDKLCRSVTSL 229 (850)
Q Consensus 165 ~l~~~~--wRVReaa~~Al~~--Ll~~~~~~~l~---~~L~~i~~~l~~~ldD~--------k~~VR~aA~~~~~~L~~~ 229 (850)
.+.|.. ..+|.+++.||+- ++.+...+.+. +.+..+|.....-.+.. .+.|..+|...+.-|..
T Consensus 137 ~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt- 215 (309)
T PF05004_consen 137 ILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLT- 215 (309)
T ss_pred HHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHh-
Confidence 776643 5677777666554 45566656665 66776776554222222 13566666554433322
Q ss_pred HHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcC
Q 003081 230 TIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAG 283 (850)
Q Consensus 230 ~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g 283 (850)
.++.. .....+...+|.|.. -|.+++.+||..|..+|.-|.....
T Consensus 216 ---~~~~~-----~~~~~~~~~~~~l~~-lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 216 ---TLPDS-----KLEDLLEEALPALSE-LLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred ---cCCHH-----HHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 22221 133466667887763 3567788999999998887776544
No 123
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.70 E-value=1.2 Score=47.50 Aligned_cols=55 Identities=25% Similarity=0.184 Sum_probs=48.5
Q ss_pred HhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCc-chhhhHHHHHHHHHHh
Q 003081 514 QLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGE-SLSNYHHVLLESIMKE 568 (850)
Q Consensus 514 ~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~-~l~~~l~~llp~L~~~ 568 (850)
..|.+..++.+.+.|.+++..+|.-+..++..++..+|. .+.+|...+|..|...
T Consensus 203 ~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~E 258 (262)
T PF14500_consen 203 PLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKFE 258 (262)
T ss_pred HhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 367788999999999999999999999999999999885 5888999999988654
No 124
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=95.64 E-value=2.2 Score=47.24 Aligned_cols=215 Identities=20% Similarity=0.191 Sum_probs=130.6
Q ss_pred hHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHH
Q 003081 357 QLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQA 436 (850)
Q Consensus 357 ~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v 436 (850)
..++.+.+.+.+. ....|..++..+..+ =....++.+...+ .|.++.||..++.++|.+- .+..+
T Consensus 43 ~~~~~~~~~l~~~-~~~vr~~aa~~l~~~----------~~~~av~~l~~~l-~d~~~~vr~~a~~aLg~~~---~~~a~ 107 (335)
T COG1413 43 EAADELLKLLEDE-DLLVRLSAAVALGEL----------GSEEAVPLLRELL-SDEDPRVRDAAADALGELG---DPEAV 107 (335)
T ss_pred hhHHHHHHHHcCC-CHHHHHHHHHHHhhh----------chHHHHHHHHHHh-cCCCHHHHHHHHHHHHccC---ChhHH
Confidence 3566667777765 566777777665432 1235577777777 7899999999999887663 33334
Q ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCc------------hHHHHHHHHHHHH
Q 003081 437 QKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDD------------KYVSDLFEELWEE 504 (850)
Q Consensus 437 ~~li~~l~~~~~~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~------------~~v~~~~~~v~~~ 504 (850)
..+++.+.. .++...|..++.+++.+.... .+.|++ ..+.+.. ..+|.........
T Consensus 108 ~~li~~l~~--d~~~~vR~~aa~aL~~~~~~~---------a~~~l~-~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~ 175 (335)
T COG1413 108 PPLVELLEN--DENEGVRAAAARALGKLGDER---------ALDPLL-EALQDEDSGSAAAALDAALLDVRAAAAEALGE 175 (335)
T ss_pred HHHHHHHHc--CCcHhHHHHHHHHHHhcCchh---------hhHHHH-HHhccchhhhhhhhccchHHHHHHHHHHHHHH
Confidence 433333332 134456888887777663211 122222 2222222 1233333333222
Q ss_pred hcCCChhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 003081 505 NTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAI 584 (850)
Q Consensus 505 l~~~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL 584 (850)
.-.+...+.+...+.+++..+|..|+.+++.+.... ..+.+.+...+.+..|..|.+.+.++
T Consensus 176 ----------~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~~~~l 237 (335)
T COG1413 176 ----------LGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAALLAL 237 (335)
T ss_pred ----------cCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHHHHHh
Confidence 112334556677788899999999999999777532 45668888889888999999998888
Q ss_pred HHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 003081 585 GSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLE 630 (850)
Q Consensus 585 ~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg 630 (850)
+.+.. +.-...+.......+...+..+...++
T Consensus 238 ~~~~~--------------~~~~~~l~~~l~~~~~~~~~~~~~~~~ 269 (335)
T COG1413 238 GEIGD--------------EEAVDALAKALEDEDVILALLAAAALG 269 (335)
T ss_pred cccCc--------------chhHHHHHHHHhccchHHHHHHHHHhc
Confidence 75421 233445555555556666666666655
No 125
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.56 E-value=7.5 Score=46.53 Aligned_cols=181 Identities=15% Similarity=0.147 Sum_probs=104.4
Q ss_pred hhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCC-ChhHHHHHHHHHHHHHcc--CCch
Q 003081 115 RLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSR-LWRSREASCLSLADIIQG--RKFD 191 (850)
Q Consensus 115 ~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~-~wRVReaa~~Al~~Ll~~--~~~~ 191 (850)
.+++|-+- --.+..-.+||-..=|.+.-++- +.-++--+.+-..++.-+.|. +--||-+++.++.-.+.. ...+
T Consensus 487 ~~llpEl~-~~~~~~RiiRRRVa~ilg~Wvsv--q~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~d 563 (978)
T KOG1993|consen 487 EALLPELA-NDHGNSRIIRRRVAWILGQWVSV--QQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSED 563 (978)
T ss_pred HhhCHHhh-hcccchhHHHHHHHHHHhhhhhe--echHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChh
Confidence 36777773 12223345677765555555531 122333344555556666776 677899999999888875 3456
Q ss_pred hhhHHHHHHHHHHHHHhccCcH-HHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHH
Q 003081 192 QVGKHLRRIWTAAFRAMDDIKE-TVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKA 270 (850)
Q Consensus 192 ~l~~~L~~i~~~l~~~ldD~k~-~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~ 270 (850)
.+.||++.+|..+|+.+.-..+ ..|... +..++....|.-+ ... ..+..+ -..+|.|=+ + ..+.+-+|..
T Consensus 564 sFlp~lenlf~~lfkll~~~~e~Dtk~~V---L~~ls~lI~r~~e-~I~--P~~~~i-vq~lp~LWe-~-s~~e~lLr~a 634 (978)
T KOG1993|consen 564 SFLPYLENLFVLLFKLLKAVEECDTKTSV---LNLLSTLIERVSE-HIA--PYASTI-VQYLPLLWE-E-SEEEPLLRCA 634 (978)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhHHHH---HHHHHHHHHHHHH-hhh--HHHHHH-HHHHHHHHh-h-hccCcHHHHH
Confidence 7999999999999998853211 112222 3344433333321 100 011222 234666542 2 2245668888
Q ss_pred HHHHHHHHHHhcCcccccchHHHHHHHHHhccccchh
Q 003081 271 SIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQ 307 (850)
Q Consensus 271 a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~ 307 (850)
.+.++.+++...|..=.++.|-++|.+--...-..|+
T Consensus 635 lL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~ 671 (978)
T KOG1993|consen 635 LLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPE 671 (978)
T ss_pred HHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCc
Confidence 8999999999988765566666666554444323343
No 126
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=95.44 E-value=0.86 Score=52.26 Aligned_cols=237 Identities=11% Similarity=0.112 Sum_probs=128.1
Q ss_pred cccccchHHHHHHHHHHhhhh---cCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhc---C---CchhhHHHHHH
Q 003081 390 GMDIKPYTSMLLRLLFPVVKE---EKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI---D---DKNSQISCAIL 460 (850)
Q Consensus 390 ~~~~~py~~~lL~~Ll~~l~~---D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~---~---d~~~r~~~~~~ 460 (850)
..++.|+++.++..|+..+.. -.|+.+-|+..+.+..+-+... +....+++++..... . ++..---..+.
T Consensus 17 ~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~-p~~~~il~~L~~il~~v~kNPsnP~FnHylFEs 95 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDIL-PIAVEILQHLTAILKEVSKNPSNPRFNHYLFES 95 (435)
T ss_dssp GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTG-GGHHHHHHHHHHHHHHHHTS---HHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHH
Confidence 367899999999999999943 2366666666665544333222 223444444444331 2 33333344555
Q ss_pred HHHHHhh----chhhhhhhHhhHhHHHHHHh-cC---CchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCCC
Q 003081 461 LKSYSSV----ASDVLSGYHAVIVPVIFISR-FE---DDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSS 532 (850)
Q Consensus 461 l~al~~~----~~~~f~~~~~~vlP~l~~~~-~d---~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s 532 (850)
++.+.++ .++....+.+.++|.+..-. .| -.|+|-+....+.+... + ..+......+++.+. +..-
T Consensus 96 i~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~-~--~~~p~~y~~L~~~Ll---~p~l 169 (435)
T PF03378_consen 96 IGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRP-S--SPLPDAYKQLFPPLL---SPAL 169 (435)
T ss_dssp HHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS-----S--TTTGGGHHHHT---SGGG
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-C--CCCcHHHHHHHHHHc---Ccch
Confidence 5555554 34444567777888764322 33 23445555444443322 1 223333333443332 2233
Q ss_pred HHHH---HHHHHHHHHHHHHhCcchh--hhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHH
Q 003081 533 WSSK---RKSAKAICKLGEILGESLS--NYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIV 607 (850)
Q Consensus 533 ~~vr---~~aa~alg~la~~~g~~l~--~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~ 607 (850)
|+.+ .+..+.+.....+.+..+. .++..++.+..+-+.+|.-+ ..-|+-|.+++..+.... ..+|++.|+
T Consensus 170 We~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~---l~~yl~~I~ 244 (435)
T PF03378_consen 170 WERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEA---LEPYLKQIF 244 (435)
T ss_dssp GGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHH---HGGGHHHHH
T ss_pred hccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHH---HHHHHHHHH
Confidence 4322 4555677777777766654 46899999998888887633 334666777777665422 236889998
Q ss_pred HHHHHHHh-hcCHHHHHHHHHHHHHHHHHcCC
Q 003081 608 DMVSSACR-KKIKKYREAAFSCLEQVIKAFRD 638 (850)
Q Consensus 608 ~~l~~e~~-r~~~~~R~~Al~~Lg~l~~~~~~ 638 (850)
..+.+.+. .+..+|++.-+.-++-++-..+.
T Consensus 245 ~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~ 276 (435)
T PF03378_consen 245 TLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGP 276 (435)
T ss_dssp HHHHHHHHHC--HHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCH
Confidence 87776665 46778888777777766655543
No 127
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.42 Score=56.10 Aligned_cols=135 Identities=17% Similarity=0.139 Sum_probs=84.5
Q ss_pred chHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhchhhh----------------------------hHHHHHHhh
Q 003081 73 PDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLR----------------------------LLIPKLVRF 124 (850)
Q Consensus 73 p~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L~----------------------------~lvp~L~r~ 124 (850)
++.+-.+...+..-+.-+-.||-+.||+-++=+..+..+|++. +.|.+|+.+
T Consensus 483 ~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~ 562 (929)
T KOG2062|consen 483 QEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHV 562 (929)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcc
Confidence 3455555555533222355678888887776544333333322 556666665
Q ss_pred -cCCCCHhHHHHHHHHHHHhc-cCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHH
Q 003081 125 -QYDPDKNVQDAMAHIWKSLV-ADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWT 202 (850)
Q Consensus 125 -~~Dp~~~VR~a~~~iw~~Lv-~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~ 202 (850)
..|+|..|||++.-..+-+. .||. ..+.++.-|-+ +-+++||.+++.|+|-.+.|.+...-. .
T Consensus 563 aVsD~nDDVrRaAVialGFVl~~dp~-----~~~s~V~lLse---s~N~HVRyGaA~ALGIaCAGtG~~eAi-------~ 627 (929)
T KOG2062|consen 563 AVSDVNDDVRRAAVIALGFVLFRDPE-----QLPSTVSLLSE---SYNPHVRYGAAMALGIACAGTGLKEAI-------N 627 (929)
T ss_pred cccccchHHHHHHHHHheeeEecChh-----hchHHHHHHhh---hcChhhhhhHHHHHhhhhcCCCcHHHH-------H
Confidence 67999999999977766544 4432 23334443333 346899999999999999887754332 2
Q ss_pred HHHHHhccCcHHHHHHHHHH
Q 003081 203 AAFRAMDDIKETVRTAGDKL 222 (850)
Q Consensus 203 ~l~~~ldD~k~~VR~aA~~~ 222 (850)
.+-.++.|...-||+.|..+
T Consensus 628 lLepl~~D~~~fVRQgAlIa 647 (929)
T KOG2062|consen 628 LLEPLTSDPVDFVRQGALIA 647 (929)
T ss_pred HHhhhhcChHHHHHHHHHHH
Confidence 33345679989999988543
No 128
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=95.13 E-value=7.2 Score=43.85 Aligned_cols=121 Identities=14% Similarity=0.199 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHh---cCCCChhhHHHHHHHHHHHHHhcccccc---c--CCCCchH
Q 003081 533 WSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKE---VPGRLWEGKDALLYAIGSISTSCHKDIS---A--EDPTTPF 604 (850)
Q Consensus 533 ~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~---L~~r~~~gKe~vL~aL~~l~~~~~~~l~---~--~~~~~~~ 604 (850)
-+.|++|...+-.+++..+..+.+.+...+..+.+. -+...|.-|+.++..+++++.+....-. . ...+..+
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 456777778899999887766554433333333332 2346799999999999999876642111 0 0111111
Q ss_pred HHHHHHHHHHh---hcCHHHHHHHHHHHHHHHHHcCCchhHHhHHHHHHhhc
Q 003081 605 AIVDMVSSACR---KKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMC 653 (850)
Q Consensus 605 ~i~~~l~~e~~---r~~~~~R~~Al~~Lg~l~~~~~~~~~~~iv~~~l~~~~ 653 (850)
=....+.-++. ...+-.|..|++.+..+-..++.+.+.+++..++.-+.
T Consensus 305 Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~ 356 (370)
T PF08506_consen 305 FFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQ 356 (370)
T ss_dssp HHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTT
T ss_pred HHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhC
Confidence 11223333443 45688999999999998888876556665544444443
No 129
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=95.06 E-value=0.067 Score=65.69 Aligned_cols=124 Identities=18% Similarity=0.144 Sum_probs=88.3
Q ss_pred HHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhH-HHHHH
Q 003081 100 SKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRS-REASC 178 (850)
Q Consensus 100 ~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRV-Reaa~ 178 (850)
.+++...+..+.| +-+..|+||.+.+.+++.||.++..+...+.++.. .+-+-.++..++..+++-+--+ |+++.
T Consensus 801 ~s~~~~m~s~l~~-~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~---~e~m~~v~~~~~~ll~~~~~~~~r~~a~ 876 (1549)
T KOG0392|consen 801 NSLAPLMHSFLHP-LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSAT---RETMATVINGFLPLLGDLDKFVRRQGAD 876 (1549)
T ss_pred HHHHHhhhhhhhh-hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhccchhhHhhhhhHH
Confidence 3444455678888 88899999999999999999999998888875432 2333344444444454444344 45555
Q ss_pred HHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Q 003081 179 LSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTS 228 (850)
Q Consensus 179 ~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~ 228 (850)
..+.-+.+. ..-.+.+|.+-+++.+++.|+|..++||.+|++.+..+..
T Consensus 877 e~~~~l~~~-l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip 925 (1549)
T KOG0392|consen 877 ELIELLDAV-LMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIP 925 (1549)
T ss_pred HHHHHHHHh-hcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhc
Confidence 555554443 2235678888999999999999999999999887776644
No 130
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.03 E-value=10 Score=44.90 Aligned_cols=264 Identities=14% Similarity=0.121 Sum_probs=153.5
Q ss_pred HHHHHHHHHhhcCh--hhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhc--ccccchHHHHHHHHHHhhhhcCcH
Q 003081 339 MWDTLDLCINVVDT--ESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIG--MDIKPYTSMLLRLLFPVVKEEKSA 414 (850)
Q Consensus 339 l~eal~~~~~~ld~--~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~--~~~~py~~~lL~~Ll~~l~~D~n~ 414 (850)
++|+|.-.+ .+|. +.+..-+..|.+.+.+. .-+.|--+..-++.|+..-. ..++.| ...++..+..+++.
T Consensus 310 LFeaI~l~~-h~D~e~~ll~~~~~~Lg~fls~r-E~NiRYLaLEsm~~L~ss~~s~davK~h----~d~Ii~sLkterDv 383 (938)
T KOG1077|consen 310 LFEAISLAI-HLDSEPELLSRAVNQLGQFLSHR-ETNIRYLALESMCKLASSEFSIDAVKKH----QDTIINSLKTERDV 383 (938)
T ss_pred HHHHHHHHH-HcCCcHHHHHHHHHHHHHHhhcc-cccchhhhHHHHHHHHhccchHHHHHHH----HHHHHHHhccccch
Confidence 566665433 3333 23556666677766543 44566667776766665411 123333 45556666458999
Q ss_pred HHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhc-CCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchH
Q 003081 415 AAKRAFASACASVLKYATPSQAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKY 493 (850)
Q Consensus 415 ~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~-~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~ 493 (850)
+||+.+..-+-.++. .+....++..+.+-+. .|...|.....=+.-++......+.-|.+.++.++.++....++
T Consensus 384 SirrravDLLY~mcD---~~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsd- 459 (938)
T KOG1077|consen 384 SIRRRAVDLLYAMCD---VSNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSD- 459 (938)
T ss_pred HHHHHHHHHHHHHhc---hhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccH-
Confidence 999988776655543 3334445555554443 35555544332223344433445678889899888776533232
Q ss_pred HHHHHHHHHHHhcCC--ChhhHHhhHH-HHHHHHHHhhcCC--CHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHh
Q 003081 494 VSDLFEELWEENTSG--DRVTLQLYLG-EIVSLICEGIASS--SWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKE 568 (850)
Q Consensus 494 v~~~~~~v~~~l~~~--~~~~i~~yl~-eIl~ll~~~L~d~--s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~ 568 (850)
++|..+++- -...++.|.- .+++ +|..+ +..+=..+++.||+...-+-+.-...-...+..|.+-
T Consensus 460 ------eVW~RvvQiVvNnedlq~yaak~~fe----~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K 529 (938)
T KOG1077|consen 460 ------EVWYRVVQIVVNNEDLQGYAAKRLFE----YLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEK 529 (938)
T ss_pred ------HHHHHhheeEecchhhhHHHHHHHHH----HHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHH
Confidence 566555442 1235666653 2333 33333 2345556778888776543321111235667788888
Q ss_pred cCCCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 003081 569 VPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLE 630 (850)
Q Consensus 569 L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg 630 (850)
+..-+...|.-+|.++..++.-. ++.-..|.+++.....--+.++.+.|+.-|.
T Consensus 530 ~~~~s~~tr~lLLtTyiKl~nl~--------PEi~~~v~~vFq~~~n~~D~ElQqRa~EYLq 583 (938)
T KOG1077|consen 530 LHLCSPVTRALLLTTYIKLINLF--------PEIKSNVQKVFQLYSNLIDVELQQRAVEYLQ 583 (938)
T ss_pred hccCChhHHHHHHHHHHHHHhhC--------hhhhHHHHHHHHhhcccCCHHHHHHHHHHHH
Confidence 87777788999999999888532 2344556666666655567888888887653
No 131
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=95.03 E-value=0.23 Score=48.81 Aligned_cols=153 Identities=14% Similarity=0.141 Sum_probs=92.9
Q ss_pred ccchHH--HHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhchh
Q 003081 393 IKPYTS--MLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASD 470 (850)
Q Consensus 393 ~~py~~--~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~~d~~~r~~~~~~l~al~~~~~~ 470 (850)
+.||.+ .++..|++.+..+.+..+|+++.+.+|.+....|...-. .....+ ..
T Consensus 2 v~PY~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~---------~~~~~~----------~~------ 56 (160)
T PF11865_consen 2 VDPYLDYPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKS---------IQKSLD----------SK------ 56 (160)
T ss_pred cchHHHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhc---------ccccCC----------cc------
Confidence 457755 899999999987888999999999999887654432210 000000 00
Q ss_pred hhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCCCHHHHH-HHHHHHHHHHHH
Q 003081 471 VLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKR-KSAKAICKLGEI 549 (850)
Q Consensus 471 ~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~-~aa~alg~la~~ 549 (850)
...+......... -.+....++. -.-|....+..+...+.|++-...+ .+..++-.+...
T Consensus 57 ---------------~~~~~~~~~~~~~-l~~~~~~~~~---ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~ 117 (160)
T PF11865_consen 57 ---------------SSENSNDESTDIS-LPMMGISPSS---EEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKS 117 (160)
T ss_pred ---------------ccccccccchhhH-HhhccCCCch---HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Confidence 0000000000100 0111111111 1123333456666677787654444 466778888877
Q ss_pred hCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 003081 550 LGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSIST 589 (850)
Q Consensus 550 ~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~ 589 (850)
.|..-.+|+++++|.++..++.-+...+|.+|.-|+.++.
T Consensus 118 l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 118 LGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred cCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 8877789999999999999976555889999998888764
No 132
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.03 E-value=2.3 Score=58.34 Aligned_cols=304 Identities=11% Similarity=0.131 Sum_probs=169.5
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHHHhcc-------CCh-HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccC
Q 003081 117 LIPKLVRFQYDPDKNVQDAMAHIWKSLVA-------DPK-RTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGR 188 (850)
Q Consensus 117 lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~-------d~~-~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~ 188 (850)
+++.|...+...++.++.+...+...+-. ++. ...-..++.+++.+....-++.|.-|.+.|.+++-+++..
T Consensus 985 ~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~ 1064 (3550)
T KOG0889|consen 985 FLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESM 1064 (3550)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhc
Confidence 45555566677777777775444443321 111 1123356788888888889999999999999999999887
Q ss_pred CchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchh-HHhHHHHhHHHHhhccCCCchhHH
Q 003081 189 KFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISD-ARQSMDIVLPFLLAEGILSKVDSI 267 (850)
Q Consensus 189 ~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~-~~~~l~~lLP~Ll~~gL~s~~~ev 267 (850)
+...+-.+...++..++-++-|....+-+.....++.....+.+.+-........ .......+-|+. .++.+++..|
T Consensus 1065 ~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv--~eL~npN~~V 1142 (3550)
T KOG0889|consen 1065 PSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLV--LELFNPNSDV 1142 (3550)
T ss_pred hHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH--HHHcCCchHH
Confidence 7666778888888888888877655555544444444443334433222111111 122334444443 3688888899
Q ss_pred HHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhh-hHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHH
Q 003081 268 SKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGL-NYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLC 346 (850)
Q Consensus 268 r~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~-nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~ 346 (850)
|+++...|..++...|.. +++++..+-+.+.. |-.. .+-..... .++- .++++.-|
T Consensus 1143 R~~~~~~L~~i~~~s~~~----v~~L~~p~K~~ll~--p~f~k~lr~~p~~------~qig-----------~vd~~~fC 1199 (3550)
T KOG0889|consen 1143 REFSQKLLRLISELSGKS----VVKLLEPFKDVLLS--PIFKKPLRALPFT------IQIG-----------HLDAITFC 1199 (3550)
T ss_pred HHHHHHHHHHHHHHcCCc----HHHHHHHHHHHHhc--cccccccccCCHH------HHhh-----------hHHHHHHH
Confidence 999999999999877543 55666666555521 1100 00000000 0000 01111111
Q ss_pred H-----------------h---hcChhhHhhHHHHHHHHHh--cc-CCCchHhhHHHHHHHHHHHhc---ccccchHHHH
Q 003081 347 I-----------------N---VVDTESLDQLVPHLARLVR--SG-IGLNTRVGVASFISLLVQKIG---MDIKPYTSML 400 (850)
Q Consensus 347 ~-----------------~---~ld~~~l~~lvp~L~~~lk--~~-~~~~tr~~a~~~l~~L~~~~~---~~~~py~~~l 400 (850)
+ + .+-+....+... +.+... .. .-.+-|+.|...++....... ....+|-+++
T Consensus 1200 ~~l~p~~f~~~~~l~~l~~~~~~La~~~~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~ki 1278 (3550)
T KOG0889|consen 1200 LSLGPCLFDFTEELYRLKRFLIALADAEEDELAT-IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKI 1278 (3550)
T ss_pred HHcCCcccCchHHHHHHHHHHHHhhhhhhhhhhh-hhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHH
Confidence 1 0 000000011111 111110 00 012347788888765543322 2345788899
Q ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHHHhhh---CCHHHHHHHHHHHHHhh
Q 003081 401 LRLLFPVVKEEKSAAAKRAFASACASVLKY---ATPSQAQKLIEETAALH 447 (850)
Q Consensus 401 L~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~---~~~~~v~~li~~l~~~~ 447 (850)
+..+++.+ .-++..+.+.+..++-..... .+.+.++..+..+...+
T Consensus 1279 i~v~fk~l-~~~~~Ei~~~~~~~l~~v~~~~~~~~ke~lq~~lrplL~~l 1327 (3550)
T KOG0889|consen 1279 IAVFFKSL-YKRSSELIEVALEGLRKVLAQDVKLPKELLQSHLRPLLMNL 1327 (3550)
T ss_pred HHHHHHHH-cCChHHHHHHHHHHHHhhhhccccccHHHHHhhHHHHHHhh
Confidence 99999999 567888877777776555432 45666666665554443
No 133
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.00 E-value=0.19 Score=61.79 Aligned_cols=157 Identities=18% Similarity=0.139 Sum_probs=101.7
Q ss_pred hhhhHHHHHHhhc----CCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhC-CCChhHHHHHHHHHHHHHcc
Q 003081 113 HLRLLIPKLVRFQ----YDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSG-SRLWRSREASCLSLADIIQG 187 (850)
Q Consensus 113 ~L~~lvp~L~r~~----~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~-~~~wRVReaa~~Al~~Ll~~ 187 (850)
.|.++.|.+.-.+ .-.+|..|.|+.-+..-++.-+ .++.+.-+|.++..|. ++++++|-.+..|+||+.-.
T Consensus 916 lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS----a~fces~l~llftimeksp~p~IRsN~VvalgDlav~ 991 (1251)
T KOG0414|consen 916 LLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS----AEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVR 991 (1251)
T ss_pred HHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHhcCCCceeeecchheccchhhh
Confidence 3556667666545 3346899999877777776433 3345666777777776 88999999999999999743
Q ss_pred CCchhhhHHHHHHHH-HHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhH
Q 003081 188 RKFDQVGKHLRRIWT-AAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDS 266 (850)
Q Consensus 188 ~~~~~l~~~L~~i~~-~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~e 266 (850)
.+ .+-+-|+ .+++-+.|...+||+.|...+..|.- -... ..+..+.. +- ..|.+++++
T Consensus 992 fp------nlie~~T~~Ly~rL~D~~~~vRkta~lvlshLIL--ndmi--------KVKGql~e----MA-~cl~D~~~~ 1050 (1251)
T KOG0414|consen 992 FP------NLIEPWTEHLYRRLRDESPSVRKTALLVLSHLIL--NDMI--------KVKGQLSE----MA-LCLEDPNAE 1050 (1251)
T ss_pred cc------cccchhhHHHHHHhcCccHHHHHHHHHHHHHHHH--hhhh--------HhcccHHH----HH-HHhcCCcHH
Confidence 22 2223343 46777899999999998766554421 0011 11112222 21 246788999
Q ss_pred HHHHHHHHHHHHHHhcCcccccchHHHHH
Q 003081 267 ISKASIGVVMKLVKGAGIAIRPHLSDLVS 295 (850)
Q Consensus 267 vr~~a~~~L~~la~~~g~~l~P~lp~Lvp 295 (850)
++..|=..+-+++++. ..+-..+|+|+.
T Consensus 1051 IsdlAk~FF~Els~k~-n~iynlLPdil~ 1078 (1251)
T KOG0414|consen 1051 ISDLAKSFFKELSSKG-NTIYNLLPDILS 1078 (1251)
T ss_pred HHHHHHHHHHHhhhcc-cchhhhchHHHH
Confidence 9999999999998776 444444444443
No 134
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=94.75 E-value=0.46 Score=47.60 Aligned_cols=135 Identities=18% Similarity=0.168 Sum_probs=86.2
Q ss_pred hhhHHhhHHHHHHH-hhhhhchhhhhHHHHH------------HhhcCCCCHhHHHHHHHHHHHhccCChHHH-------
Q 003081 92 KRGAAFGFSKIAKQ-AGDALKPHLRLLIPKL------------VRFQYDPDKNVQDAMAHIWKSLVADPKRTI------- 151 (850)
Q Consensus 92 r~gAa~gl~~I~~~-~~~~l~p~L~~lvp~L------------~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i------- 151 (850)
|.+|...|+.++.. -.+.+-+|...++|-- .-..+||+++||.++.....+|..+++..+
T Consensus 3 R~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~ 82 (182)
T PF13251_consen 3 RQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESK 82 (182)
T ss_pred hHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcC
Confidence 44555566666655 2344444544444433 223579999999999998888887654322
Q ss_pred ---------HHHHHHHHHHH----HHhhCC-CChhHHHHHHHHHHHHHccCCchhhh-HHHHHHHHHHHHHhccCcHHHH
Q 003081 152 ---------DEHLDLIFDDL----LIQSGS-RLWRSREASCLSLADIIQGRKFDQVG-KHLRRIWTAAFRAMDDIKETVR 216 (850)
Q Consensus 152 ---------~~~~~~Il~~L----l~~l~~-~~wRVReaa~~Al~~Ll~~~~~~~l~-~~L~~i~~~l~~~ldD~k~~VR 216 (850)
..-+-.++.++ +..+.. ++..+-...+.+++.|+++.+.+.+. +.+.++|..+...+.+.+..||
T Consensus 83 ~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~ 162 (182)
T PF13251_consen 83 GPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVR 162 (182)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHH
Confidence 11122233333 333332 34556667888999999998887764 5677888888777888888899
Q ss_pred HHHHHHHHHH
Q 003081 217 TAGDKLCRSV 226 (850)
Q Consensus 217 ~aA~~~~~~L 226 (850)
.++......+
T Consensus 163 v~~l~~~~~l 172 (182)
T PF13251_consen 163 VAALSCLGAL 172 (182)
T ss_pred HHHHHHHHHH
Confidence 8876555554
No 135
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.72 E-value=0.42 Score=50.91 Aligned_cols=168 Identities=15% Similarity=0.204 Sum_probs=103.8
Q ss_pred HHHHHHhhcCCCCHhHHHHH----HHHHHHhccC----------ChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 003081 117 LIPKLVRFQYDPDKNVQDAM----AHIWKSLVAD----------PKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLA 182 (850)
Q Consensus 117 lvp~L~r~~~Dp~~~VR~a~----~~iw~~Lv~d----------~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~ 182 (850)
+.++=|+-+.||+..+.++. .+=|...+.. -+..+...+..++-.+.+.+.+.-.-|-.+||.+++
T Consensus 75 ~~sk~l~~fd~p~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~ 154 (334)
T KOG2933|consen 75 IVSKNLSPFDDPEAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLA 154 (334)
T ss_pred hhhcccCccCcHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 55555566667776666553 2233333322 123445556777888889999988889999999999
Q ss_pred HHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCC
Q 003081 183 DIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILS 262 (850)
Q Consensus 183 ~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s 262 (850)
++.+.... .+..-+..++..|+.--++.+.-||+.|.+++.+..+- .....++..++|++- .
T Consensus 155 difs~ln~-~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~------------vtp~~~L~~L~~~~~-----~ 216 (334)
T KOG2933|consen 155 DIFSSLNN-SIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNH------------VTPQKLLRKLIPILQ-----H 216 (334)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhc------------cChHHHHHHHHHHHh-----h
Confidence 99875332 22224455555555444677789999999877766432 124457888888743 2
Q ss_pred chhHHHHHHHHHHHHHHHhcC--cccccchHHHHHHHHHhcc
Q 003081 263 KVDSISKASIGVVMKLVKGAG--IAIRPHLSDLVSCMLESLS 302 (850)
Q Consensus 263 ~~~evr~~a~~~L~~la~~~g--~~l~P~lp~Lvp~LL~~Ls 302 (850)
..+.+|..++.+....+...| +...+|+-.+++.+-+-++
T Consensus 217 ~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~~a~~~~~~ 258 (334)
T KOG2933|consen 217 SNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLSRAAQEQGS 258 (334)
T ss_pred hchhhhhhhhccccccceeccccchhhHhHHHHHHHHHhhhc
Confidence 456788888777766665554 2233444444454444443
No 136
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=94.71 E-value=0.58 Score=46.30 Aligned_cols=114 Identities=13% Similarity=0.094 Sum_probs=86.2
Q ss_pred chhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCC-hHHHHHHHHHHHHHHHHhhCCCC-hhHHHHHHHHHHHHHc--
Q 003081 111 KPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADP-KRTIDEHLDLIFDDLLIQSGSRL-WRSREASCLSLADIIQ-- 186 (850)
Q Consensus 111 ~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~-~~~i~~~~~~Il~~Ll~~l~~~~-wRVReaa~~Al~~Ll~-- 186 (850)
+..+.+++-++..+..++++.-|.......+..+... ...+.+|....+..+++-+..++ ..+++++|.++..++.
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 3467788899999999999999999999999998764 56676788888888888887655 4569999999999986
Q ss_pred -cCC---chhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Q 003081 187 -GRK---FDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSV 226 (850)
Q Consensus 187 -~~~---~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L 226 (850)
+.+ -+...|+++.+++.++..+++ +.+...+..++..+
T Consensus 100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~l 141 (165)
T PF08167_consen 100 RGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATL 141 (165)
T ss_pred cCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHH
Confidence 222 134578899999999988876 34444544444433
No 137
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.68 E-value=12 Score=44.25 Aligned_cols=145 Identities=13% Similarity=0.120 Sum_probs=85.6
Q ss_pred hhhHHH-HHHhhcCCCCHh-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCch
Q 003081 114 LRLLIP-KLVRFQYDPDKN-VQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFD 191 (850)
Q Consensus 114 L~~lvp-~L~r~~~Dp~~~-VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~ 191 (850)
..+.+. .|.-+...|.|. |=+-...+...+- +.+ .-++.++.++..++.+..+++-.||.-+|.-++-++.... +
T Consensus 42 flr~vn~il~vkKresi~dRIl~fla~fv~sl~-q~d-~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~-e 118 (892)
T KOG2025|consen 42 FLRVVNYILLVKKRESIPDRILSFLARFVESLP-QLD-KEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENA-E 118 (892)
T ss_pred HHHHHHHheeeccCCCcHHHHHHHHHHHHHhhh-ccC-chhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccc-c
Confidence 334444 333445555553 3333344444443 111 2344778999999999999999999999998888776211 1
Q ss_pred hhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHH
Q 003081 192 QVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKAS 271 (850)
Q Consensus 192 ~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a 271 (850)
.-...+..|..++..-+-|..+.||-.|..++..+.. ++. . ..-++.+. +-++++ .++++|||..+
T Consensus 119 idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~------d~~--d--ee~~v~n~-l~~liq---nDpS~EVRRaa 184 (892)
T KOG2025|consen 119 IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQG------DPK--D--EECPVVNL-LKDLIQ---NDPSDEVRRAA 184 (892)
T ss_pred cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc------CCC--C--CcccHHHH-HHHHHh---cCCcHHHHHHH
Confidence 1223344555555555567779999988765554431 111 1 11134443 444442 46889999988
Q ss_pred HHHH
Q 003081 272 IGVV 275 (850)
Q Consensus 272 ~~~L 275 (850)
+..+
T Consensus 185 LsnI 188 (892)
T KOG2025|consen 185 LSNI 188 (892)
T ss_pred HHhh
Confidence 7765
No 138
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.65 E-value=0.32 Score=53.60 Aligned_cols=112 Identities=15% Similarity=0.102 Sum_probs=95.6
Q ss_pred hhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchh
Q 003081 113 HLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQ 192 (850)
Q Consensus 113 ~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~ 192 (850)
++.+++|++ .+.|.+||+.+..=.+.+...-+..+..|+-.+++.+...+.|.+.-||.+....+-.++.....+.
T Consensus 59 tlkeLl~ql----kHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~ 134 (393)
T KOG2149|consen 59 TLKELLSQL----KHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKED 134 (393)
T ss_pred cHHHHHhhh----cCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhh
Confidence 567888888 9999999999977666666554456777999999999999999999999999999988888777777
Q ss_pred hhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Q 003081 193 VGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTS 228 (850)
Q Consensus 193 l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~ 228 (850)
++++..-+++.++.+|..+-+.||.-+.+.+..+..
T Consensus 135 ~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~ 170 (393)
T KOG2149|consen 135 QSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLE 170 (393)
T ss_pred hcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHH
Confidence 999999999999999999999999987766555543
No 139
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=94.44 E-value=0.17 Score=56.33 Aligned_cols=101 Identities=21% Similarity=0.299 Sum_probs=70.5
Q ss_pred chhhhhHHHHHHhhcCCC-------CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh----------CCCChhH
Q 003081 111 KPHLRLLIPKLVRFQYDP-------DKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQS----------GSRLWRS 173 (850)
Q Consensus 111 ~p~L~~lvp~L~r~~~Dp-------~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l----------~~~~wRV 173 (850)
+|-|.+|+|.+.+|..+. |-.+-..+..+..+|..|+.-.++.|+..+||.+++++ .+.+|..
T Consensus 205 D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~L 284 (343)
T cd08050 205 DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWAL 284 (343)
T ss_pred CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHH
Confidence 456677777777776654 33334445666777888988788999999999999887 3567999
Q ss_pred HHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCc
Q 003081 174 REASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIK 212 (850)
Q Consensus 174 Reaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k 212 (850)
|+-|+.-++.++...+. .+....+.|...+.+++-|.+
T Consensus 285 Rd~AA~ll~~i~~~f~~-~y~~l~~ri~~tl~k~l~d~~ 322 (343)
T cd08050 285 RDYAARLLAQICRKFST-SYNTLQPRITRTLLKALLDPK 322 (343)
T ss_pred HHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHcCCC
Confidence 99999999999874332 233334455556666655543
No 140
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=94.42 E-value=15 Score=43.96 Aligned_cols=314 Identities=13% Similarity=0.110 Sum_probs=151.7
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCch-------hhh--HHHHHHHHHHHH--HhccCcHHHHHHHHHHHH
Q 003081 156 DLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFD-------QVG--KHLRRIWTAAFR--AMDDIKETVRTAGDKLCR 224 (850)
Q Consensus 156 ~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~-------~l~--~~L~~i~~~l~~--~ldD~k~~VR~aA~~~~~ 224 (850)
...+..-+.+-...+|..-|.|..-+-.+-++.+.+ +++ ..+.++...+.. +....++.|.-.=. .
T Consensus 439 r~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfm---E 515 (980)
T KOG2021|consen 439 RQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFM---E 515 (980)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHH---H
Confidence 344444455556677998899888777766643211 222 233344333332 33455666643221 2
Q ss_pred HHHHHHHHhhhcccCcchhHHhHHHHhHHHHhh-ccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccc
Q 003081 225 SVTSLTIRLCDVTLTEISDARQSMDIVLPFLLA-EGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSS 303 (850)
Q Consensus 225 ~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~-~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~ 303 (850)
.+ +|+-.--..+ ++ ....+|-..++ +|+.+.+..||.-+.....+.+|...+.+-||+.+++..+-.+|..
T Consensus 516 ~i----vRY~kff~~e---sq-~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~ 587 (980)
T KOG2021|consen 516 LI----VRYNKFFSTE---SQ-KIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHI 587 (980)
T ss_pred HH----HHHHHHHhcc---hh-hhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 22 3321111111 12 23333333344 7999999999999999999999999999999999999988888853
Q ss_pred cchhhhhHHHHhhhhcccchhhh---HHHHHhhc-cCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhhHH
Q 003081 304 LEDQGLNYIELHAANAGIQTEKL---ENLRISIA-KGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVA 379 (850)
Q Consensus 304 ~ep~~~nyl~~~a~~~~~~~d~i---d~~r~~~~-~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~ 379 (850)
.-|.. |+-+.+... .++++ +....-+. ..+|.-..-..+-.-++....+.++..+...+.++...+.+++-+
T Consensus 588 ~vtt~-N~~s~~lt~---fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c 663 (980)
T KOG2021|consen 588 KVTTI-NAQSDNLTI---FDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAEC 663 (980)
T ss_pred cCCCc-Ccccccccc---ccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHH
Confidence 32221 211111100 00110 00000000 111111111111112222223333333333344433445555333
Q ss_pred H----HHHHHHHHhcccccc--------hHHHHHHHHHHhhh-hcCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHh
Q 003081 380 S----FISLLVQKIGMDIKP--------YTSMLLRLLFPVVK-EEKSAAAKRAFASACASVLKYATPSQAQKLIEETAAL 446 (850)
Q Consensus 380 ~----~l~~L~~~~~~~~~p--------y~~~lL~~Ll~~l~-~D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~ 446 (850)
+ .++.++..+.....+ .-.+.+..++..+. -..++.+|.+....+++++.+.+++ +-++++++.+.
T Consensus 664 ~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~~-vlPfipklie~ 742 (980)
T KOG2021|consen 664 HHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFNKFENIRSAVRFTFHRMIPILGNK-VLPFIPKLIEL 742 (980)
T ss_pred HHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhcchh-hhcchHHHHHH
Confidence 2 233333322211100 01133444444441 1256778888888899998877655 45667777766
Q ss_pred hcCC--chhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHH
Q 003081 447 HIDD--KNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFI 485 (850)
Q Consensus 447 ~~~d--~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~ 485 (850)
+..| ..+-....-++..+.......+.+.+.+++|.+..
T Consensus 743 lL~s~d~kEmvdfl~flsQLihkfk~~~~~ilnqmlppll~ 783 (980)
T KOG2021|consen 743 LLSSTDLKEMVDFLGFLSQLIHKFKTDCYQILNQMLPPLLN 783 (980)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6433 33222223333333322334555666777766543
No 141
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=94.35 E-value=0.55 Score=47.03 Aligned_cols=142 Identities=18% Similarity=0.201 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHHhccC-ChHHHHHHHHHHHHHH-----------H-HhhCCCChhHHHHHHHHHHHHHccCC--------
Q 003081 131 NVQDAMAHIWKSLVAD-PKRTIDEHLDLIFDDL-----------L-IQSGSRLWRSREASCLSLADIIQGRK-------- 189 (850)
Q Consensus 131 ~VR~a~~~iw~~Lv~d-~~~~i~~~~~~Il~~L-----------l-~~l~~~~wRVReaa~~Al~~Ll~~~~-------- 189 (850)
+||.++..+..+++.. +++.+-.|+..++|+- + -.+.|++.|+|.+|+.++..+++|..
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 4888888888888866 5567777888888776 1 12468999999999999999998532
Q ss_pred -------chhhhHHHHHHHH----HHHHHhccC-cHHHHHHHHHHHHHHHHHHHHhhhcccC-cchhHHhHHHHhHHHHh
Q 003081 190 -------FDQVGKHLRRIWT----AAFRAMDDI-KETVRTAGDKLCRSVTSLTIRLCDVTLT-EISDARQSMDIVLPFLL 256 (850)
Q Consensus 190 -------~~~l~~~L~~i~~----~l~~~ldD~-k~~VR~aA~~~~~~L~~~~~r~~~~~~~-~~~~~~~~l~~lLP~Ll 256 (850)
+-.+..-+..++. .+...++.. +..+-.. +++.++.. +. ..||+. .+....+++..+.|++.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q---~lK~la~L-v~-~tPY~rL~~~ll~~~v~~v~~~l~ 155 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQ---LLKCLAVL-VQ-ATPYHRLPPGLLTEVVTQVRPLLR 155 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHH---HHHHHHHH-Hc-cCChhhcCHhHHHHHHHHHHHHHh
Confidence 2223333333333 333334322 2333333 33433321 11 123321 12223445555555543
Q ss_pred hccCCCchhHHHHHHHHHHHHHHHhc
Q 003081 257 AEGILSKVDSISKASIGVVMKLVKGA 282 (850)
Q Consensus 257 ~~gL~s~~~evr~~a~~~L~~la~~~ 282 (850)
+.+.+++..++.+++.+....
T Consensus 156 -----~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 156 -----HRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred -----cCCCcHHHHHHHHHHHHHcCC
Confidence 356788889999998886543
No 142
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=1.1 Score=51.29 Aligned_cols=166 Identities=14% Similarity=0.145 Sum_probs=95.1
Q ss_pred cccCcccccCCcccccCCCCccchHHHHHHHhhhcC------------------CchHHHHHHHHhccchhhhhhhhHHh
Q 003081 36 LAEDSEVFQEGAIGEGLGGGKLSTYKELCNLANEMG------------------QPDLIYKFMDLANYQVSLNSKRGAAF 97 (850)
Q Consensus 36 ~~~~t~lf~~g~~~~~~~g~~~styk~l~~lA~~~g------------------~p~lv~~fm~la~~~~~w~sr~gAa~ 97 (850)
+.++...++-|.++- +.++..+..++...|.+-. .+++.+.+..-...+.+.--|-+-+|
T Consensus 461 ~~geAa~~gMGl~mL--gt~s~eai~dm~tya~ETqhe~i~Rglgig~aLi~ygrqe~add~I~ell~d~ds~lRy~G~f 538 (926)
T COG5116 461 LLGEAAVYGMGLLML--GTWSVEAIEDMRTYAGETQHERIKRGLGIGFALILYGRQEMADDYINELLYDKDSILRYNGVF 538 (926)
T ss_pred hhhhhhhhccceeee--cCCCHHHHHHHHHHhcchhhhhHHhhhhhhhhHhhhhhHHHHHHHHHHHhcCchHHhhhccHH
Confidence 334445566676552 3456666666666665432 22233332221111111222334445
Q ss_pred hHHHHHHHhhhhhchhhhhHHHHHHhh-cCCCCHhHHHHHHHHHHHhc-cCChHHHHHHHHHHHHHHHHhhCCCChhHHH
Q 003081 98 GFSKIAKQAGDALKPHLRLLIPKLVRF-QYDPDKNVQDAMAHIWKSLV-ADPKRTIDEHLDLIFDDLLIQSGSRLWRSRE 175 (850)
Q Consensus 98 gl~~I~~~~~~~l~p~L~~lvp~L~r~-~~Dp~~~VR~a~~~iw~~Lv-~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVRe 175 (850)
+++..+-+.|. ..++..|+.| ..|-|..|||++.-+.+-+. .|+ .. +..+++.|. .+.+++||.
T Consensus 539 s~alAy~GTgn------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~-~~----lv~tvelLs---~shN~hVR~ 604 (926)
T COG5116 539 SLALAYVGTGN------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR-DL----LVGTVELLS---ESHNFHVRA 604 (926)
T ss_pred HHHHHHhcCCc------chhHhhhheeecccCchHHHHHHHHheeeeEecCc-ch----hhHHHHHhh---hccchhhhh
Confidence 55444444432 1467777777 88999999999976666544 333 22 222333222 245789999
Q ss_pred HHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 003081 176 ASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCR 224 (850)
Q Consensus 176 aa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~ 224 (850)
+++.|||-.+.|.+...-.+ .+-+++.|...-||++|..+..
T Consensus 605 g~AvaLGiacag~G~~~a~d-------iL~~L~~D~~dfVRQ~AmIa~~ 646 (926)
T COG5116 605 GVAVALGIACAGTGDKVATD-------ILEALMYDTNDFVRQSAMIAVG 646 (926)
T ss_pred hhHHHhhhhhcCCccHHHHH-------HHHHHhhCcHHHHHHHHHHHHH
Confidence 99999999998876433222 2335678999999999864443
No 143
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.16 E-value=14 Score=47.67 Aligned_cols=149 Identities=11% Similarity=0.087 Sum_probs=85.9
Q ss_pred hcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHH--HhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHH
Q 003081 349 VVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQ--KIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACAS 426 (850)
Q Consensus 349 ~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~--~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~ 426 (850)
++.....++++..+.....++..|..|.+...++..++- .++ ...+..+.+-..+.+.+ +|..-.||+.++.++.-
T Consensus 1518 ~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv-~~~~~r~dI~~l~~s~l-~D~~i~vre~Aa~~Lsg 1595 (1710)
T KOG1851|consen 1518 WIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFV-SQELRRDDIRKLLESLL-NDDQIEVREEAAKCLSG 1595 (1710)
T ss_pred ccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhc-ccchhHHHHHHHHHHHH-cchHHHHHHHHHHHHHH
Confidence 344333444555544434444457788888888766543 333 45677889999999999 78878899999999988
Q ss_pred HhhhCCHHHHHHHHHHHHHhh---cCCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchH-HHHHHHHH
Q 003081 427 VLKYATPSQAQKLIEETAALH---IDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKY-VSDLFEEL 501 (850)
Q Consensus 427 L~~~~~~~~v~~li~~l~~~~---~~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~-v~~~~~~v 501 (850)
++++.....+.+-.+...... ..|+...-.+...++++.-..|-.+....++++- ..++++.++. ++....++
T Consensus 1596 l~~~s~~~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~--~Ls~fa~e~~~i~~tvkkt 1672 (1710)
T KOG1851|consen 1596 LLQGSKFQFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLM--NLSSFARESAAIKQTVKKT 1672 (1710)
T ss_pred HHhccccccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHH--HHHhhcCCchHHHHHHHHH
Confidence 887765443331111111111 1233334466778888876666544443333332 2356654443 34433333
No 144
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=94.15 E-value=4.5 Score=43.75 Aligned_cols=149 Identities=13% Similarity=0.111 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchh---hhHH--HHHHHHHHHHHhc--------cCcHHH
Q 003081 149 RTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQ---VGKH--LRRIWTAAFRAMD--------DIKETV 215 (850)
Q Consensus 149 ~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~---l~~~--L~~i~~~l~~~ld--------D~k~~V 215 (850)
..+++|++-++|.+|.-+.|.+..+|.-+|..+..+++..+... +..+ ..-+...++..+- |....+
T Consensus 111 ~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~L 190 (282)
T PF10521_consen 111 PWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLEL 190 (282)
T ss_pred chHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHH
Confidence 46899999999999999999999999999999999998766554 3322 2222222333332 333334
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCC--C--chhHHHHHHHHHHHHHHHhcCcccccchH
Q 003081 216 RTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGIL--S--KVDSISKASIGVVMKLVKGAGIAIRPHLS 291 (850)
Q Consensus 216 R~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~--s--~~~evr~~a~~~L~~la~~~g~~l~P~lp 291 (850)
=.+|..++..|.+..- .. ++......+.+.+--.+++ ++. . +..+++.+.++.+..+++..|.....|+.
T Consensus 191 l~~ay~~L~~L~~~~~---~~--~~~~r~~~l~~~l~e~IL~-~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~ 264 (282)
T PF10521_consen 191 LQAAYPALLSLLKTQE---ND--DSNPRSTWLDKILREGILS-SMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQ 264 (282)
T ss_pred HHHHHHHHHHHHHhhc---cC--CcccchHHHHHHHHHHHhh-hceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 4455555555533221 11 1111111122222222332 222 1 25789999999999999999999999999
Q ss_pred HHHHHHHHhccc
Q 003081 292 DLVSCMLESLSS 303 (850)
Q Consensus 292 ~Lvp~LL~~Ls~ 303 (850)
.|+|.+.+.+.+
T Consensus 265 rii~~l~~~l~n 276 (282)
T PF10521_consen 265 RIIPVLSQILEN 276 (282)
T ss_pred HHHHHHHHHhcC
Confidence 999999998874
No 145
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=94.11 E-value=0.76 Score=45.20 Aligned_cols=140 Identities=8% Similarity=0.085 Sum_probs=75.6
Q ss_pred hhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhh-hcCcHHHHHHHHHHHHHHhhhCCHH
Q 003081 356 DQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVK-EEKSAAAKRAFASACASVLKYATPS 434 (850)
Q Consensus 356 ~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~-~D~n~~Vr~~~a~alg~L~~~~~~~ 434 (850)
++|++.|.+.+++...+..|..+.++++.| ..+.||.-+.+..-...-. .+.+...........+.. ...++
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGil-----GALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~ee 81 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGIL-----GALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGIS--PSSEE 81 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-----cccCcHHHhcccccCCccccccccccchhhHHhhccCC--CchHH
Confidence 688999999999886678899999999887 4677776553222111100 000000111000000000 00111
Q ss_pred HH-HHHHHHHHHhhcCC---chhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHH
Q 003081 435 QA-QKLIEETAALHIDD---KNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWE 503 (850)
Q Consensus 435 ~v-~~li~~l~~~~~~d---~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~ 503 (850)
.. .-.+..+...+ .| ...+..+..++..|.+..+..+.+|+++++|.++......++..++.+...+.
T Consensus 82 ~y~~vvi~~L~~iL-~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~ 153 (160)
T PF11865_consen 82 YYPTVVINALMRIL-RDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLA 153 (160)
T ss_pred HHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHH
Confidence 00 00111122211 12 22355677777888877788888999999999877666555566666554443
No 146
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.07 E-value=5.8 Score=43.25 Aligned_cols=103 Identities=14% Similarity=0.109 Sum_probs=70.6
Q ss_pred hHHHHHH-hhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhh
Q 003081 116 LLIPKLV-RFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVG 194 (850)
Q Consensus 116 ~lvp~L~-r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~ 194 (850)
.++..|. .....+++.||+.+..+.+.+.--.++.-.+|+..++..+ ...+-.+|..|+.++.|++.-.+.+.+.
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~----~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQAL----QKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 4444333 3458888999999999888766322344555666666554 2237799999999999999855544433
Q ss_pred HH--------HHHHHHHHHHHhccCcHHHHHHHHHH
Q 003081 195 KH--------LRRIWTAAFRAMDDIKETVRTAGDKL 222 (850)
Q Consensus 195 ~~--------L~~i~~~l~~~ldD~k~~VR~aA~~~ 222 (850)
.. -..+...+.+.+++..+.+|..|...
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EG 137 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEG 137 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 33 34677778888888888898876543
No 147
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.04 E-value=0.49 Score=52.25 Aligned_cols=135 Identities=17% Similarity=0.216 Sum_probs=108.8
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhc
Q 003081 157 LIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDV 236 (850)
Q Consensus 157 ~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~ 236 (850)
.-+.+|+..+.+.+-.||.-+...+-+++.. -+..+..++..+++.+....-|-...||.+...+...+... .|.
T Consensus 58 ltlkeLl~qlkHhNakvRkdal~glkd~l~s-~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~---~~~- 132 (393)
T KOG2149|consen 58 LTLKELLSQLKHHNAKVRKDALNGLKDLLKS-HPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILP---ACK- 132 (393)
T ss_pred ccHHHHHhhhcCchHhhhHHHHHHHHHHHHh-ChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhh---cch-
Confidence 4678899999999999999999999999987 34677888999999988887788889999998777765422 121
Q ss_pred ccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhcc
Q 003081 237 TLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLS 302 (850)
Q Consensus 237 ~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls 302 (850)
++-.+++..++|.+. .++....+++|.-++..+.-++..+++.+.-+...+++.+.+.++
T Consensus 133 -----e~~sp~~~l~~~yi~-~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~ 192 (393)
T KOG2149|consen 133 -----EDQSPMVSLLMPYIS-SAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVIS 192 (393)
T ss_pred -----hhhcchHHHHHHHHH-HHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 123457788888876 577778899999999999999999998888777777777777665
No 148
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.90 E-value=6.2 Score=43.19 Aligned_cols=131 Identities=13% Similarity=0.128 Sum_probs=83.7
Q ss_pred cchhhhhhhhHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHH-HHHHHH
Q 003081 85 YQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDL-IFDDLL 163 (850)
Q Consensus 85 ~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~-Il~~Ll 163 (850)
++.....+.+|+.-|...++..+-..+=.=...++.|..|..++++.||..+..+.+.++.+-++.....++. -++.|+
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 3344677888888877777655321110111334445559999999999999999999998877655554422 455555
Q ss_pred HhhC-CCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHH
Q 003081 164 IQSG-SRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETV 215 (850)
Q Consensus 164 ~~l~-~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~V 215 (850)
..++ +..-++|..|..|++.++....+-.-.-.-..=+.++..+|.+....|
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~ 225 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSV 225 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcch
Confidence 5554 445688999999999999875532211111122566777777643333
No 149
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.84 E-value=20 Score=43.42 Aligned_cols=185 Identities=9% Similarity=0.096 Sum_probs=100.8
Q ss_pred hhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHH-HHHHHHHHHHhhCCCC-hhHHHHHHHHHHHHHccCCc
Q 003081 113 HLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEH-LDLIFDDLLIQSGSRL-WRSREASCLSLADIIQGRKF 190 (850)
Q Consensus 113 ~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~-~~~Il~~Ll~~l~~~~-wRVReaa~~Al~~Ll~~~~~ 190 (850)
.+.+|+.-|-. -.||...+.... ....-|+-....++..+ ++.++|.|..-+.+++ ..+--.||.|+..+++..|.
T Consensus 168 k~kkLL~gL~~-~~Des~Qleal~-Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 168 KAKKLLQGLQA-ESDESQQLEALT-ELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred HHHHHHHhccc-cCChHHHHHHHH-HHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence 44555555532 226766666443 22333333333455533 4678888877776653 78888999999999986653
Q ss_pred hh--hhHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHH
Q 003081 191 DQ--VGKHLRRIWTAAFRAMDDIK-ETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSI 267 (850)
Q Consensus 191 ~~--l~~~L~~i~~~l~~~ldD~k-~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~ev 267 (850)
.. +..| ..+|.+..-|--|. -.|-+.+..++..+++.--+.|=.. ..+...|.+|= +-+ -.+
T Consensus 246 S~a~vV~~--~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~A--------G~l~a~LsylD---FFS--i~a 310 (1051)
T KOG0168|consen 246 SSAIVVDE--HAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQA--------GALSAVLSYLD---FFS--IHA 310 (1051)
T ss_pred hhheeecc--cchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhc--------ccHHHHHHHHH---HHH--HHH
Confidence 21 1111 12233222222111 1244444445555543221122100 02223343321 111 245
Q ss_pred HHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHH
Q 003081 268 SKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIEL 314 (850)
Q Consensus 268 r~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~ 314 (850)
+..|+.+..++|++..++=-.|+-+.+|.|...|+..+.+.+-|.+.
T Consensus 311 QR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~i 357 (1051)
T KOG0168|consen 311 QRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCI 357 (1051)
T ss_pred HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 67889999999999876555677789999999998665555544443
No 150
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=93.83 E-value=34 Score=46.03 Aligned_cols=267 Identities=9% Similarity=0.040 Sum_probs=142.9
Q ss_pred hhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhh-CC--
Q 003081 356 DQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKY-AT-- 432 (850)
Q Consensus 356 ~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~-~~-- 432 (850)
.+++-.+...+++......|....+.+..++...+..++.=-..++..+-... .++++.+-+.+-..+..+++- .+
T Consensus 1181 kefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa-~d~~e~iV~lAFetl~~I~~d~f~~l 1259 (1780)
T PLN03076 1181 NEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAA-YDDHKNIVLLAFEIIEKIIREYFPYI 1259 (1780)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHhhhhhc
Confidence 45777777778776667788888888888888888888776778888887777 567766555555555544421 00
Q ss_pred ----HHHHHHHHHHHHHhhcC--CchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCC-c-----hHHHHHHHH
Q 003081 433 ----PSQAQKLIEETAALHID--DKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFED-D-----KYVSDLFEE 500 (850)
Q Consensus 433 ----~~~v~~li~~l~~~~~~--d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~-~-----~~v~~~~~~ 500 (850)
.+....++.-+.+.-.. +.+.-..+...+..++.. +... |+........ + +.......+
T Consensus 1260 ~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~----La~~-----~~~~~~~~~~~~~~~~~s~~~~~~~~ 1330 (1780)
T PLN03076 1260 TETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATK----LAEG-----DLGSSSRNKDKEAPPSSPQSGKDGKQ 1330 (1780)
T ss_pred cccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHH----HHhc-----cccccccccccccccccccccccccc
Confidence 11222222222111111 111111222111111111 1000 0000000000 0 000000000
Q ss_pred HHHHhcCCChhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhh-----H-HHHHHHHHHhcC----
Q 003081 501 LWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNY-----H-HVLLESIMKEVP---- 570 (850)
Q Consensus 501 v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~-----l-~~llp~L~~~L~---- 570 (850)
--..+.. .......+++ ++.-+.....|+..+||..|..+|=++....|..|.+. + ..|+|++.. ++
T Consensus 1331 ~~~~~~~-~~~~~~lW~p-LL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~-l~~~~~ 1407 (1780)
T PLN03076 1331 ESGEFTD-KDDHLYFWFP-LLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDY-VRHAID 1407 (1780)
T ss_pred ccccccc-chhHHHHHHH-HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHH-HHHhhc
Confidence 0000000 0111223333 34444455668899999999999999999999988862 2 345555432 11
Q ss_pred --------------------CCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 003081 571 --------------------GRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLE 630 (850)
Q Consensus 571 --------------------~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg 630 (850)
.+.|. ++....||..++.-...++.. -.+.++.++..+.+.++..|..+-+.+..||-
T Consensus 1408 ~~~~~~~~~~~~~~~~~~~e~~~Wl-~eT~~~AL~~lvdLft~fFd~-L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~ 1485 (1780)
T PLN03076 1408 PSGGDEPEGQGVDGDQGELDQDAWL-YETCTLALQLVVDLFVKFYPT-VNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFV 1485 (1780)
T ss_pred cccccccccccccccccchhhhhHH-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 01242 456666666665544433321 23467788888899999999999999999999
Q ss_pred HHHHHcC
Q 003081 631 QVIKAFR 637 (850)
Q Consensus 631 ~l~~~~~ 637 (850)
.++...+
T Consensus 1486 ~li~~ng 1492 (1780)
T PLN03076 1486 RLMSNAG 1492 (1780)
T ss_pred HHHHHhh
Confidence 9988764
No 151
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=92.87 E-value=20 Score=42.11 Aligned_cols=103 Identities=15% Similarity=0.141 Sum_probs=66.6
Q ss_pred CchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhc-CC
Q 003081 372 LNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI-DD 450 (850)
Q Consensus 372 ~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~-~d 450 (850)
...|.-|+++|..+. ..|-...+.-+.+++..+ +|.+..||..+...+..+++.. .+.+.++.+-|.+++. +|
T Consensus 36 ~k~K~Laaq~I~kff----k~FP~l~~~Ai~a~~DLc-EDed~~iR~~aik~lp~~ck~~-~~~v~kvaDvL~QlL~tdd 109 (556)
T PF05918_consen 36 PKEKRLAAQFIPKFF----KHFPDLQEEAINAQLDLC-EDEDVQIRKQAIKGLPQLCKDN-PEHVSKVADVLVQLLQTDD 109 (556)
T ss_dssp HHHHHHHHHHHHHHH----CC-GGGHHHHHHHHHHHH-T-SSHHHHHHHHHHGGGG--T---T-HHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHHH----hhChhhHHHHHHHHHHHH-hcccHHHHHHHHHhHHHHHHhH-HHHHhHHHHHHHHHHhccc
Confidence 446778888886554 556567888999999999 7999999999999888887653 4567888888888886 45
Q ss_pred chhhHHHHHHHHHHHhhchh-hhhhhHhhHh
Q 003081 451 KNSQISCAILLKSYSSVASD-VLSGYHAVIV 480 (850)
Q Consensus 451 ~~~r~~~~~~l~al~~~~~~-~f~~~~~~vl 480 (850)
..+...+-.++.++.+.-+. .+...+.++.
T Consensus 110 ~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~ 140 (556)
T PF05918_consen 110 PVELDAVKNSLMSLLKQDPKGTLTGLFSQIE 140 (556)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 55666666666666554432 2333344443
No 152
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=92.83 E-value=27 Score=41.86 Aligned_cols=351 Identities=12% Similarity=0.158 Sum_probs=173.0
Q ss_pred HHHHHHhh-hhhchhhhhHHHHHHhhcC-CCC-HhHHHH--H----HHHHHHhccCChHHHHHHH-HHHHHHHHHhhCCC
Q 003081 100 SKIAKQAG-DALKPHLRLLIPKLVRFQY-DPD-KNVQDA--M----AHIWKSLVADPKRTIDEHL-DLIFDDLLIQSGSR 169 (850)
Q Consensus 100 ~~I~~~~~-~~l~p~L~~lvp~L~r~~~-Dp~-~~VR~a--~----~~iw~~Lv~d~~~~i~~~~-~~Il~~Ll~~l~~~ 169 (850)
-.+.++-+ +.+.|-|+-+...|=++-- +|| .+.|++ + .+|.+ +++.++ .....+ +-|++.++..+.++
T Consensus 395 ~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s-~itk~s-p~an~me~fiv~hv~P~f~s~ 472 (970)
T COG5656 395 IISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKS-FITKMS-PAANVMEYFIVNHVIPAFRSN 472 (970)
T ss_pred HHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHH-HhccCc-hHHHHHHHHHHHHhhHhhcCc
Confidence 33333334 4588877777777754443 344 344444 2 33333 222222 122223 22455555566676
Q ss_pred ChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHH
Q 003081 170 LWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMD 249 (850)
Q Consensus 170 ~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~ 249 (850)
--=.|.-||.-+..+-+.-+ ....+.++......+|.+.+-.||-.|.-+++.+..- -. .+ ....+.+.
T Consensus 473 ygfL~Srace~is~~eeDfk---d~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~----~q-~h---~k~sahVp 541 (970)
T COG5656 473 YGFLKSRACEFISTIEEDFK---DNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFN----EQ-SH---EKFSAHVP 541 (970)
T ss_pred ccchHHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhc----hh-hh---HHHHhhhh
Confidence 65567778887777622211 2234667777788888888888998877666665321 11 00 11222333
Q ss_pred HhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhhh-cccchhhhHH
Q 003081 250 IVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAAN-AGIQTEKLEN 328 (850)
Q Consensus 250 ~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~-~~~~~d~id~ 328 (850)
..+.-|+ .|.... ++ ...-.++..++......+.||.|+++..|.+.+-.+ .+-+..+.++ ++. .|+
T Consensus 542 ~tmekLL--sLSn~f-ei-D~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlki----aq~l~ens~d~~s~----vDD 609 (970)
T COG5656 542 ETMEKLL--SLSNTF-EI-DPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKI----AQSLLENSSDTSSV----VDD 609 (970)
T ss_pred HHHHHHH--Hhcccc-cc-hHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHH----HHHHHcCCcccccc----ccH
Confidence 3333333 122211 11 012245667778889999999999998887732110 0000111111 111 111
Q ss_pred HHHhhccCCcHHHHHHHHHhhcChh--hH----hhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHH
Q 003081 329 LRISIAKGSPMWDTLDLCINVVDTE--SL----DQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLR 402 (850)
Q Consensus 329 ~r~~~~~~s~l~eal~~~~~~ld~~--~l----~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~ 402 (850)
...++. -+..+++..+-.++.. ++ ..+.|.+.=.++... ...=..|+.++-.. +-...++.|.+-.+.+
T Consensus 610 Kqmaas---GiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i-~dfy~Ea~dildg~-tf~skeI~pimwgi~E 684 (970)
T COG5656 610 KQMAAS---GILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEI-SDFYQEALDILDGY-TFMSKEIEPIMWGIFE 684 (970)
T ss_pred HHHHHH---HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHhhh-hHHHHHhhhhhhHHHH
Confidence 111111 1122333333222221 12 234555554555431 11122455554332 2223467788888888
Q ss_pred HHHHhhhhcCcH-HHHHHHHHHHHHHhhhCCHH-----HHHHHHHHHHHhh--cCCc--hhhHHHHHHHHHHHhhchh-h
Q 003081 403 LLFPVVKEEKSA-AAKRAFASACASVLKYATPS-----QAQKLIEETAALH--IDDK--NSQISCAILLKSYSSVASD-V 471 (850)
Q Consensus 403 ~Ll~~l~~D~n~-~Vr~~~a~alg~L~~~~~~~-----~v~~li~~l~~~~--~~d~--~~r~~~~~~l~al~~~~~~-~ 471 (850)
.+...+ .+... .-.++++.++..++-..+.+ .....+-.+.... +++. +.+..++.++..+.-...+ .
T Consensus 685 ll~~~l-~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~L 763 (970)
T COG5656 685 LLLNLL-IDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDEL 763 (970)
T ss_pred HHHhcc-cccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchh
Confidence 888888 44442 44577778887776544322 1222233333222 2333 3467888888888766655 3
Q ss_pred hhhhHhhHhH
Q 003081 472 LSGYHAVIVP 481 (850)
Q Consensus 472 f~~~~~~vlP 481 (850)
...|.+.|..
T Consensus 764 l~qy~plfi~ 773 (970)
T COG5656 764 LSQYLPLFIS 773 (970)
T ss_pred HHhhhHHHHH
Confidence 3444443333
No 153
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=92.80 E-value=4.2 Score=48.26 Aligned_cols=118 Identities=10% Similarity=0.055 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHhhCCC-ChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH
Q 003081 152 DEHLDLIFDDLLIQSGSR-LWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLT 230 (850)
Q Consensus 152 ~~~~~~Il~~Ll~~l~~~-~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~ 230 (850)
.+|-+.+++.|..-+.-. .-+++---..-+.-|.+-.+.+.+ ...|++.+++.++|....+++.+.....++.+.+
T Consensus 344 ~~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~---~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~i 420 (700)
T KOG2137|consen 344 NEFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPEEV---KEKILPLLYRSLEDSDVQIQELALQILPTVAESI 420 (700)
T ss_pred hhhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChHHH---HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhc
Confidence 334455555555554421 122222222222223333344444 5588999999999999999998877766665442
Q ss_pred HHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCc
Q 003081 231 IRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGI 284 (850)
Q Consensus 231 ~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~ 284 (850)
| ...+-+.|+|-|-+-.+...+..|+..++.+++.+++.+-.
T Consensus 421 ----D--------~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~ 462 (700)
T KOG2137|consen 421 ----D--------VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDK 462 (700)
T ss_pred ----c--------HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHH
Confidence 3 33456778998753223346778899999999999977654
No 154
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=92.38 E-value=3.1 Score=46.32 Aligned_cols=86 Identities=8% Similarity=0.240 Sum_probs=61.6
Q ss_pred HHHhcCCChhhHHhhHHHHHHHHHHhh----------cCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCC
Q 003081 502 WEENTSGDRVTLQLYLGEIVSLICEGI----------ASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPG 571 (850)
Q Consensus 502 ~~~l~~~~~~~i~~yl~eIl~ll~~~L----------~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~ 571 (850)
...+..+..-.+.+|+-.+++.+..|+ .+..|.+|..||..++.+|..++.......+.++..|.+++-+
T Consensus 241 v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d 320 (343)
T cd08050 241 VRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLD 320 (343)
T ss_pred HHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcC
Confidence 334444333357899999999988886 2457999999999999999999877555578888888888843
Q ss_pred --CChhhHHHHHHHHHHH
Q 003081 572 --RLWEGKDALLYAIGSI 587 (850)
Q Consensus 572 --r~~~gKe~vL~aL~~l 587 (850)
+.....-..+.+|..+
T Consensus 321 ~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 321 PKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred CCCCcchhhHHHHHHHHh
Confidence 3444455555555444
No 155
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.13 E-value=0.62 Score=53.09 Aligned_cols=129 Identities=16% Similarity=0.145 Sum_probs=87.3
Q ss_pred CCchHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHH
Q 003081 71 GQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRT 150 (850)
Q Consensus 71 g~p~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~ 150 (850)
|.-..|-.+++.+-+..+-.-||+|..++|-||-+-.+ .|...+.-| -...|++||....-+.+.-..+..
T Consensus 548 gn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~----~lv~tvelL---s~shN~hVR~g~AvaLGiacag~G-- 618 (926)
T COG5116 548 GNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD----LLVGTVELL---SESHNFHVRAGVAVALGIACAGTG-- 618 (926)
T ss_pred CcchhHhhhheeecccCchHHHHHHHHheeeeEecCcc----hhhHHHHHh---hhccchhhhhhhHHHhhhhhcCCc--
Confidence 33456777777765544446789999999988754433 223333333 345699999987666665443432
Q ss_pred HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcH
Q 003081 151 IDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKE 213 (850)
Q Consensus 151 i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~ 213 (850)
++.--.|+..|. .|..--||++||.|.+-++..+. +++.|.+..|...+.++..|.|+
T Consensus 619 -~~~a~diL~~L~---~D~~dfVRQ~AmIa~~mIl~Q~n-~~Lnp~v~~I~k~f~~vI~~Khe 676 (926)
T COG5116 619 -DKVATDILEALM---YDTNDFVRQSAMIAVGMILMQCN-PELNPNVKRIIKKFNRVIVDKHE 676 (926)
T ss_pred -cHHHHHHHHHHh---hCcHHHHHHHHHHHHHHHHhhcC-cccChhHHHHHHHHHHHHhhhhH
Confidence 222233444443 46666899999999999886554 67899999999999999998876
No 156
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=92.11 E-value=20 Score=38.73 Aligned_cols=73 Identities=12% Similarity=0.103 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHH----HHHHHHHHHhccCcHHHHHHHHHHHHHHH
Q 003081 155 LDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLR----RIWTAAFRAMDDIKETVRTAGDKLCRSVT 227 (850)
Q Consensus 155 ~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~----~i~~~l~~~ldD~k~~VR~aA~~~~~~L~ 227 (850)
.+.++++|..++..++--|.--+|.-++-+++.+....+...+. +|++.++...-....+|-+||.+.++.++
T Consensus 80 apnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikria 156 (524)
T KOG4413|consen 80 APNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIA 156 (524)
T ss_pred chhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 47899999999999899999999999999999887666555443 67777777777777889999887777664
No 157
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=91.96 E-value=37 Score=41.46 Aligned_cols=109 Identities=8% Similarity=0.013 Sum_probs=61.7
Q ss_pred HHHHHHHhhcCC--CHHHHHHHHHHHHHHHHHhCcchhhhH--HHHHHHHHHhcCCCC--hhhHHHHHHHHHHHHHhcc-
Q 003081 520 IVSLICEGIASS--SWSSKRKSAKAICKLGEILGESLSNYH--HVLLESIMKEVPGRL--WEGKDALLYAIGSISTSCH- 592 (850)
Q Consensus 520 Il~ll~~~L~d~--s~~vr~~aa~alg~la~~~g~~l~~~l--~~llp~L~~~L~~r~--~~gKe~vL~aL~~l~~~~~- 592 (850)
+++.+...|... ..++--.+...+|.++.. +...+.+ ..+++.|++-|+.+. -+--..++-+|..+...-.
T Consensus 534 llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d--~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~t 611 (708)
T PF05804_consen 534 LLPWLKDLLKPGASEDDLLLEVVILLGTLASD--PECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEET 611 (708)
T ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC--HHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHH
Confidence 566666666433 235666677778877742 1122221 356677777665443 2233334444444443210
Q ss_pred -cccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 003081 593 -KDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKA 635 (850)
Q Consensus 593 -~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~ 635 (850)
+.+-. -..+...++....++|..+|+.|=.||..++..
T Consensus 612 r~~ll~-----~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 612 REVLLK-----ETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred HHHHHh-----ccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 00000 123556888888999999999999999887664
No 158
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=91.87 E-value=13 Score=41.41 Aligned_cols=52 Identities=10% Similarity=0.080 Sum_probs=41.1
Q ss_pred chHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhh----hCCHHHHHHHHHHHHHhh
Q 003081 395 PYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLK----YATPSQAQKLIEETAALH 447 (850)
Q Consensus 395 py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~----~~~~~~v~~li~~l~~~~ 447 (850)
..-+.++..+.+++ .|..+.+|+.+..++|.++. ......+..+++.+.+.+
T Consensus 57 ~~~~~~~~~~~kGl-~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 112 (339)
T PF12074_consen 57 ELPKKVVDAFKKGL-KDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSL 112 (339)
T ss_pred CCCHHHHHHHHHHh-cCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHH
Confidence 34578899999999 78888899999999999987 344455667777777766
No 159
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=91.83 E-value=32 Score=40.48 Aligned_cols=227 Identities=12% Similarity=0.084 Sum_probs=117.5
Q ss_pred ccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhc--C-Cc---------hhhHHHHHH
Q 003081 393 IKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI--D-DK---------NSQISCAIL 460 (850)
Q Consensus 393 ~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~--~-d~---------~~r~~~~~~ 460 (850)
+-+-.+.++..++... |.+..|.+.+-..+-++..... =..++.+|..+|. + +. ..|. .+
T Consensus 232 ~f~d~~~~~~~liAsa--d~~~~V~~~ae~~LKr~~~~~e---d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~---kI 303 (501)
T PF13001_consen 232 FFPDEERFPPLLIASA--DSNSSVSDRAEDLLKRLSVSLE---DPDLVDRLFDLYLGKGIPPENGRPPASPRLQE---KI 303 (501)
T ss_pred CCCcHhHHhheeeEEe--CCcchHHHHHHHHHhhcCCCCC---CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHH---HH
Confidence 3344455665555553 6777776665555544322211 2345667777776 2 11 1222 23
Q ss_pred HHHHHhhchhhhhhhHhhHhHHHHHHhcCC--chHHHHHHHHHH---HHhcCC-ChhhHHhhHHHHHHHHHHhhc-----
Q 003081 461 LKSYSSVASDVLSGYHAVIVPVIFISRFED--DKYVSDLFEELW---EENTSG-DRVTLQLYLGEIVSLICEGIA----- 529 (850)
Q Consensus 461 l~al~~~~~~~f~~~~~~vlP~l~~~~~d~--~~~v~~~~~~v~---~~l~~~-~~~~i~~yl~eIl~ll~~~L~----- 529 (850)
+.-+++.... ....+.++.+++.+.+.+ ...++....+.. ...... ....+...-+.|..-+...++
T Consensus 304 L~~L~kS~~A--a~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~ 381 (501)
T PF13001_consen 304 LSLLSKSVIA--ATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQ 381 (501)
T ss_pred HHHHHHhHHH--HhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCcccccccccc
Confidence 3334332111 123455666677777654 333443322211 111111 112233333333333333332
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCchHHH
Q 003081 530 ---SSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAI 606 (850)
Q Consensus 530 ---d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i 606 (850)
..+-..|..+..+||.++...+..+..- -.++.-|-++|.+.+.+.|-.|-+||++++......-.. ........
T Consensus 382 ~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d-~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~-~~~~~~~~ 459 (501)
T PF13001_consen 382 SNSSEDIELRSLAYETLGLLAKRAPSLFSKD-LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDD-EDEQKRLL 459 (501)
T ss_pred CCCcccHHHHHHHHHHHHHHHccCccccccc-HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccc-hhHHHHHH
Confidence 2457899999999999999887766433 235566667777777899999999999999876542210 00011222
Q ss_pred HHHHHHH-HhhcCHHHHHHHHHHHHH
Q 003081 607 VDMVSSA-CRKKIKKYREAAFSCLEQ 631 (850)
Q Consensus 607 ~~~l~~e-~~r~~~~~R~~Al~~Lg~ 631 (850)
...+..+ ........|-.|++....
T Consensus 460 ~~~l~~~~~~~~~~~~R~~avk~an~ 485 (501)
T PF13001_consen 460 LELLLLSYIQSEVRSCRYAAVKYANA 485 (501)
T ss_pred HHHHHHhhccchhHHHHHHHHHHHHH
Confidence 2233332 223445677777766544
No 160
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=91.66 E-value=4.2 Score=42.67 Aligned_cols=91 Identities=16% Similarity=0.168 Sum_probs=69.1
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCC--hhhHHHHHHHHHHHHHhcccccc
Q 003081 519 EIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRL--WEGKDALLYAIGSISTSCHKDIS 596 (850)
Q Consensus 519 eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~--~~gKe~vL~aL~~l~~~~~~~l~ 596 (850)
+-+..+.+.+.+.|.-.|+-+|++||.+-+ +.-+|.|.+.|.+.+ +-+|....+|||.++.
T Consensus 187 eaI~al~~~l~~~SalfrhEvAfVfGQl~s----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~------- 249 (289)
T KOG0567|consen 187 EAINALIDGLADDSALFRHEVAFVFGQLQS----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD------- 249 (289)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHhhccc----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-------
Confidence 334556677888899999999999998765 446777888885543 5679999999998863
Q ss_pred cCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 003081 597 AEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVI 633 (850)
Q Consensus 597 ~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~ 633 (850)
+.-+++|..-.++..+-+|..+..+|..+-
T Consensus 250 -------e~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 250 -------EDCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred -------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 456677778888888888888877776543
No 161
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.55 E-value=40 Score=41.05 Aligned_cols=79 Identities=13% Similarity=0.037 Sum_probs=52.9
Q ss_pred chhhhHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHhcccccccCCCCchHHH------HHHHHHHHhhcCHHHHHHH
Q 003081 553 SLSNYHHVLLESIMKEVP-GRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAI------VDMVSSACRKKIKKYREAA 625 (850)
Q Consensus 553 ~l~~~l~~llp~L~~~L~-~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i------~~~l~~e~~r~~~~~R~~A 625 (850)
-+..+...++|+|.+... +-.+++|-++|.|+..++.-... ..+..+ -.++..-+..++..+--.|
T Consensus 548 l~q~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~s-------eli~slLk~~~vSS~lAG~lsskD~~vlVgA 620 (1051)
T KOG0168|consen 548 LLQSFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNS-------ELIGSLLKNTNVSSHLAGMLSSKDLTVLVGA 620 (1051)
T ss_pred HHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCH-------HHHHHHHhcchHHHHHHhhhhcCCCeeEeeh
Confidence 345567889999999994 45689999999999988753221 112222 1234444556666677777
Q ss_pred HHHHHHHHHHcCC
Q 003081 626 FSCLEQVIKAFRD 638 (850)
Q Consensus 626 l~~Lg~l~~~~~~ 638 (850)
+...-.+++.+++
T Consensus 621 LQvAEiLmeKlpd 633 (1051)
T KOG0168|consen 621 LQVAEILMEKLPD 633 (1051)
T ss_pred HHHHHHHHHHhHH
Confidence 7777777777764
No 162
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=91.54 E-value=1.4 Score=40.16 Aligned_cols=78 Identities=12% Similarity=0.150 Sum_probs=62.6
Q ss_pred HhhHHHHHHHHHHhhcC----CCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 003081 514 QLYLGEIVSLICEGIAS----SSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSIST 589 (850)
Q Consensus 514 ~~yl~eIl~ll~~~L~d----~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~ 589 (850)
++|.=.|+..+...+.| .+-.-|+.+.++++.+.+..|+.+.+++|+++..|..++... +.++..+++...++.
T Consensus 6 ~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~ 83 (107)
T PF08064_consen 6 QPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIK 83 (107)
T ss_pred HHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHH
Confidence 34444455555555555 567889999999999999888899999999999999999764 788999999999998
Q ss_pred hccc
Q 003081 590 SCHK 593 (850)
Q Consensus 590 ~~~~ 593 (850)
..+.
T Consensus 84 ~L~~ 87 (107)
T PF08064_consen 84 TLDE 87 (107)
T ss_pred HCCH
Confidence 7653
No 163
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=91.36 E-value=6.4 Score=46.62 Aligned_cols=114 Identities=10% Similarity=0.080 Sum_probs=85.8
Q ss_pred hhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccc
Q 003081 515 LYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKD 594 (850)
Q Consensus 515 ~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~ 594 (850)
+|...|++.+.+...+++..+|-.-..-+...+..+.... .-.+|+|.+..++.+.+...||..+.++..++.+.+..
T Consensus 326 eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~--~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 326 EYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQI--LNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred ccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHh--hcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence 4778889999999999999998865555555444433221 24789999999999999999999999999999887653
Q ss_pred cccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHc
Q 003081 595 ISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAF 636 (850)
Q Consensus 595 l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~ 636 (850)
..-..+++.+.+--.+....+|+-...|||++....
T Consensus 404 ------~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l 439 (690)
T KOG1243|consen 404 ------NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHL 439 (690)
T ss_pred ------hhcHHHHHHHHhhCccccCcccccceeeeccccccc
Confidence 122456666666655677889999999999866544
No 164
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.10 E-value=52 Score=41.55 Aligned_cols=124 Identities=14% Similarity=0.189 Sum_probs=83.4
Q ss_pred HHHHhhhcCCchHHHHHHHH----hccchhhhhhhhHHhhHHHHHHHh--hhhhchh---hh-hHHHHHHhhcCCCCHhH
Q 003081 63 LCNLANEMGQPDLIYKFMDL----ANYQVSLNSKRGAAFGFSKIAKQA--GDALKPH---LR-LLIPKLVRFQYDPDKNV 132 (850)
Q Consensus 63 l~~lA~~~g~p~lv~~fm~l----a~~~~~w~sr~gAa~gl~~I~~~~--~~~l~p~---L~-~lvp~L~r~~~Dp~~~V 132 (850)
|..|+.-+ |.+..++|.+ .++. ...-|.+..-..+.+.... ++++++. ++ +++-.|...++|-++.|
T Consensus 299 L~elS~~~--P~l~~~~l~~lv~lld~e-s~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~v 375 (1251)
T KOG0414|consen 299 LVELSERV--PKLMLRQLTLLVDLLDSE-SYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSAYV 375 (1251)
T ss_pred HHHHHHHh--HHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHH
Confidence 44444433 4444444443 3322 2445554444456665432 3343433 33 37777777889999999
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCc
Q 003081 133 QDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKF 190 (850)
Q Consensus 133 R~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~ 190 (850)
|.-+.++|..+..-.. .....+..++......+.|++--||..|..-+..++...|+
T Consensus 376 RskVLqv~~~l~~~~s-~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pf 432 (1251)
T KOG0414|consen 376 RSKVLQVFRRLFQQHS-IPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPF 432 (1251)
T ss_pred HHHHHHHHHHHHHccC-CCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCCc
Confidence 9999999999885432 33446788999999999999999999999999999886664
No 165
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=90.97 E-value=0.39 Score=47.34 Aligned_cols=96 Identities=19% Similarity=0.190 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHHHHHhc------------------cCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHH
Q 003081 193 VGKHLRRIWTAAFRAMD------------------DIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPF 254 (850)
Q Consensus 193 l~~~L~~i~~~l~~~ld------------------D~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~ 254 (850)
+.++|++++|.++.-.. |---.+|++|...+.++-.. |... .+ +..++..
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~----~~~~----~~----~~~~~~~ 70 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDT----CLSR----ID----ISEFLDR 70 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHS----TCSS----S-----HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHH----HHHh----CC----HHHHHHH
Confidence 45778888888875431 33357899999888877442 2211 11 2334555
Q ss_pred HhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhcc
Q 003081 255 LLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLS 302 (850)
Q Consensus 255 Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls 302 (850)
+. .|+.+ ..++|..+..++.+++...+..+.++++.+++.|-..|+
T Consensus 71 v~-~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 71 VE-AGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp HH-HTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred HH-hhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence 54 59987 899999999999999999999999999999999988886
No 166
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=90.74 E-value=27 Score=37.73 Aligned_cols=177 Identities=18% Similarity=0.237 Sum_probs=97.0
Q ss_pred CChhHHHHHH-HHHHHHHc-cCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhccc----Ccch
Q 003081 169 RLWRSREASC-LSLADIIQ-GRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTL----TEIS 242 (850)
Q Consensus 169 ~~wRVReaa~-~Al~~Ll~-~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~----~~~~ 242 (850)
+.|+...+.. ..+.=++. ....+.++.+++-++|.++.++||..+.+|..+..++..+..-+ .... ....
T Consensus 87 ~~WK~~~~~~~~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~----~~~~~~~L~~tG 162 (282)
T PF10521_consen 87 QPWKSNPGLASHVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKV----PAAEWDILRRTG 162 (282)
T ss_pred CCcccCCcccHHHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhC----ChhhhHHHHHcC
Confidence 3687665433 45555565 66777899999999999999999999999999887777664321 1110 0011
Q ss_pred hHHhHHHHhHHHHhh-ccCCC--chhHHHHHHHHHHHHHHHhc-CcccccchHHHHHHHHH-hccccchhhh-hHHHHhh
Q 003081 243 DARQSMDIVLPFLLA-EGILS--KVDSISKASIGVVMKLVKGA-GIAIRPHLSDLVSCMLE-SLSSLEDQGL-NYIELHA 316 (850)
Q Consensus 243 ~~~~~l~~lLP~Ll~-~gL~s--~~~evr~~a~~~L~~la~~~-g~~l~P~lp~Lvp~LL~-~Ls~~ep~~~-nyl~~~a 316 (850)
...-+.+.+.|.+.- -.+.+ +...+=..+..++..+++.. ...=.++...+...+.+ .|+..++... .|
T Consensus 163 l~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~----- 237 (282)
T PF10521_consen 163 LFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSY----- 237 (282)
T ss_pred hHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCc-----
Confidence 233345566666541 11222 33445566777777777652 22222344444444444 3333222210 00
Q ss_pred hhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChh---hHhhHHHHHHHHHhccC
Q 003081 317 ANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTE---SLDQLVPHLARLVRSGI 370 (850)
Q Consensus 317 ~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~---~l~~lvp~L~~~lk~~~ 370 (850)
..++. .+++.+..+++.++.. .++.++|.+.+.+++..
T Consensus 238 ----------~~l~~------~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~npf 278 (282)
T PF10521_consen 238 ----------PRLRT------VLLQQLPPIIDELGISSVKHLQRIIPVLSQILENPF 278 (282)
T ss_pred ----------hhHHH------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCC
Confidence 01110 1233344445544432 46788888888877653
No 167
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=90.59 E-value=43 Score=39.69 Aligned_cols=90 Identities=17% Similarity=0.197 Sum_probs=60.5
Q ss_pred HHHHhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHH-hcccccchHHHHHHHHHHhhhhcCcHHHHHHHHH
Q 003081 344 DLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQK-IGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFAS 422 (850)
Q Consensus 344 ~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~-~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~ 422 (850)
..+++.++...+.+++-.+...++.......|...++++..+..- .+.+.++-.-.-+..++..+..|++-.+...+..
T Consensus 466 ~~~~~~l~~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALe 545 (559)
T PF14868_consen 466 SFFIQLLDPQLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALE 545 (559)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHH
Confidence 334556666677777887877887654555777888888766532 2233332333334455555558999999999999
Q ss_pred HHHHHhhhCCH
Q 003081 423 ACASVLKYATP 433 (850)
Q Consensus 423 alg~L~~~~~~ 433 (850)
|+|+..+..+.
T Consensus 546 AF~~FAe~T~~ 556 (559)
T PF14868_consen 546 AFGQFAERTSH 556 (559)
T ss_pred HHHHHhccCCc
Confidence 99999876654
No 168
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=90.50 E-value=3.6 Score=43.69 Aligned_cols=149 Identities=16% Similarity=0.120 Sum_probs=92.8
Q ss_pred HHHHHHhhcC-CCCHhHHHHHHHHHHHhccCChHHHHHHHH-HHHHHHHHhhCCCChhHHHHHHHHHHHHHccC-Cchhh
Q 003081 117 LIPKLVRFQY-DPDKNVQDAMAHIWKSLVADPKRTIDEHLD-LIFDDLLIQSGSRLWRSREASCLSLADIIQGR-KFDQV 193 (850)
Q Consensus 117 lvp~L~r~~~-Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~-~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~-~~~~l 193 (850)
-+.+|..++. ..+|.+++.+..+..-.+..+. ..+-.-+ -.++-+...+.+++.++|+.+..|+.++-... ....+
T Consensus 13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~-nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~I 91 (254)
T PF04826_consen 13 ELQKLLCLLESTEDPFIQEKALIALGNSAAFPF-NQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQI 91 (254)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhccChh-HHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHH
Confidence 3455555555 4578899888777766664431 1111111 25566777788899999999999999986643 34567
Q ss_pred hHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHH
Q 003081 194 GKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIG 273 (850)
Q Consensus 194 ~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~ 273 (850)
..|+++++...+. ..-+..|+.++.+++..+. + .+ +...++...+|.++. =+.+.+..+|..++.
T Consensus 92 k~~i~~Vc~~~~s--~~lns~~Q~agLrlL~nLt---v--~~-------~~~~~l~~~i~~ll~-LL~~G~~~~k~~vLk 156 (254)
T PF04826_consen 92 KMYIPQVCEETVS--SPLNSEVQLAGLRLLTNLT---V--TN-------DYHHMLANYIPDLLS-LLSSGSEKTKVQVLK 156 (254)
T ss_pred HHHHHHHHHHHhc--CCCCCHHHHHHHHHHHccC---C--Cc-------chhhhHHhhHHHHHH-HHHcCChHHHHHHHH
Confidence 7888888776654 2234567777766655542 1 01 122334444555442 123356678889999
Q ss_pred HHHHHHHh
Q 003081 274 VVMKLVKG 281 (850)
Q Consensus 274 ~L~~la~~ 281 (850)
+|..++..
T Consensus 157 ~L~nLS~n 164 (254)
T PF04826_consen 157 VLVNLSEN 164 (254)
T ss_pred HHHHhccC
Confidence 99999754
No 169
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=90.46 E-value=27 Score=37.24 Aligned_cols=131 Identities=14% Similarity=0.058 Sum_probs=80.0
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHH-HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 003081 161 DLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKH-LRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLT 239 (850)
Q Consensus 161 ~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~-L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~ 239 (850)
.|=..+++.++.+|..+...|+++++..+.+.+... ..-++.-...-++|. ..+..+ ...+..|.+. -. -
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~-~~~~~~-l~gl~~L~~~----~~---~ 73 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH-ACVQPA-LKGLLALVKM----KN---F 73 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH-hhHHHH-HHHHHHHHhC----cC---C
Confidence 455678899999999999999999998886666543 233333333445554 455555 3444444321 11 1
Q ss_pred cchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccc
Q 003081 240 EISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSS 303 (850)
Q Consensus 240 ~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~ 303 (850)
+...+..++..+... -...+-....|....+.+..+.......+...-+..+..+++.+..
T Consensus 74 ~~~~~~~i~~~l~~~---~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~g 134 (262)
T PF14500_consen 74 SPESAVKILRSLFQN---VDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDG 134 (262)
T ss_pred ChhhHHHHHHHHHHh---CChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhcc
Confidence 111233333333221 1223335677889999999998887777766667778888887764
No 170
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=90.29 E-value=52 Score=40.19 Aligned_cols=97 Identities=11% Similarity=0.093 Sum_probs=59.4
Q ss_pred CCCHHHHHHH-----HHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCchH
Q 003081 530 SSSWSSKRKS-----AKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPF 604 (850)
Q Consensus 530 d~s~~vr~~a-----a~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~ 604 (850)
+..+..|+.. +-.+|+++..... +.|.++-......-+.+-+.|-.++.+-+.+...+...+.+... +
T Consensus 459 ~~~P~~k~~~~~~~~~wl~ge~~~~i~r----~~~~~l~~~~~~~~~E~levq~~Il~~svkl~~~~~~~~~~~~~---~ 531 (757)
T COG5096 459 SREPRAKSVTDKYLGAWLLGEFSDIIPR----LEPELLRIAISNFVDETLEVQYTILMSSVKLIANSIRKAKQCNS---E 531 (757)
T ss_pred ccCcHHHHHHhhhhHHHhHHHHHHHHhh----hhHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhCcHhhhhccc---h
Confidence 3335566666 5556666654322 33567777777777777888999999999998887765543111 1
Q ss_pred HHHHHHHHHHhh-cCHHHHHHHHHHHHHHHH
Q 003081 605 AIVDMVSSACRK-KIKKYREAAFSCLEQVIK 634 (850)
Q Consensus 605 ~i~~~l~~e~~r-~~~~~R~~Al~~Lg~l~~ 634 (850)
.-.+.+.+.... .+++.|-.|. -++++..
T Consensus 532 ~d~~v~~~~~~~v~~~DlRDra~-my~~~ls 561 (757)
T COG5096 532 LDQDVLRRCFDYVLVPDLRDRAR-MYSRLLS 561 (757)
T ss_pred hccHHHHHHHhccCChhHHHHHH-HHHHHhc
Confidence 112334444333 4578888887 6666555
No 171
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=90.28 E-value=17 Score=43.59 Aligned_cols=125 Identities=15% Similarity=0.083 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcch--------hhhHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 003081 515 LYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESL--------SNYHHVLLESIMKEVPGRLWEGKDALLYAIGS 586 (850)
Q Consensus 515 ~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l--------~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~ 586 (850)
.++..+.+++..--.-++..++.+|..++|.++......- ..+.+.+...|.++...++.+.+...|+|||-
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 3444444444333233467899999999999997544321 22344444555555544555556677777764
Q ss_pred HHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCchhHHhHHHHHHh
Q 003081 587 ISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFE 651 (850)
Q Consensus 587 l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~~~~~~~iv~~~l~~ 651 (850)
+.. +.....+.+.+.. -......+|..|+.+|..++...+. .+.+++.|+..+
T Consensus 473 ~g~----------~~~i~~l~~~l~~-~~~~~~~iR~~Av~Alr~~a~~~p~-~v~~~l~~i~~n 525 (574)
T smart00638 473 AGH----------PSSIKVLEPYLEG-AEPLSTFIRLAAILALRNLAKRDPR-KVQEVLLPIYLN 525 (574)
T ss_pred cCC----------hhHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHhCch-HHHHHHHHHHcC
Confidence 321 1223444555541 1234578999999999988775543 667777776643
No 172
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=90.17 E-value=3.5 Score=45.42 Aligned_cols=123 Identities=9% Similarity=0.170 Sum_probs=93.5
Q ss_pred hhhhhhHHhhH-HHHHHHhhhhhchhhhhHHHHHHhhc-------CCCCHhHHHHHHHHHHHhccCChHH----HHHHHH
Q 003081 89 LNSKRGAAFGF-SKIAKQAGDALKPHLRLLIPKLVRFQ-------YDPDKNVQDAMAHIWKSLVADPKRT----IDEHLD 156 (850)
Q Consensus 89 w~sr~gAa~gl-~~I~~~~~~~l~p~L~~lvp~L~r~~-------~Dp~~~VR~a~~~iw~~Lv~d~~~~----i~~~~~ 156 (850)
...|..-+..+ +.|+.+.++.+.|+++.++-.+|..- +...|..|...-...++++...... -++.|.
T Consensus 85 p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~ 164 (319)
T PF08767_consen 85 PDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFK 164 (319)
T ss_dssp GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHH
T ss_pred ccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHH
Confidence 45677777666 88899999988999888887776432 2358999999877666666542222 266789
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCc-------hhhhHHHHHHHHHHHHHhccC
Q 003081 157 LIFDDLLIQSGSRLWRSREASCLSLADIIQGRKF-------DQVGKHLRRIWTAAFRAMDDI 211 (850)
Q Consensus 157 ~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~-------~~l~~~L~~i~~~l~~~ldD~ 211 (850)
.++..+.-++.+.+-.|-+.++.++.+++..... .-+..|+-.++...|.++-|.
T Consensus 165 ~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~ 226 (319)
T PF08767_consen 165 LVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDS 226 (319)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 9999999999999999999999999999974322 346778888888888888775
No 173
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.70 E-value=26 Score=38.46 Aligned_cols=177 Identities=14% Similarity=0.057 Sum_probs=95.9
Q ss_pred cCCCchHhhHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHHH----HHHHH
Q 003081 369 GIGLNTRVGVASFISLLVQKIGM--DIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQ----KLIEE 442 (850)
Q Consensus 369 ~~~~~tr~~a~~~l~~L~~~~~~--~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~----~li~~ 442 (850)
++....|.+|..-|..++..... +|.++ ..+..++.++ ++.++.+|+.++..+|.++...|..+.. ..+.+
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~--ggl~~ll~~l-~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~ 170 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISL--GGLVPLLGYL-ENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSK 170 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhc--cCHHHHHHHh-cCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHH
Confidence 34566788888888877766532 33222 3355555677 7899999999999999999987764321 23556
Q ss_pred HHHhhc-CCc-hhhHHHHHHHHHHHhhchhhhhhhHhhH-hHHHHHHhcC--CchHHHHHHHHHHHHhcCCChhhHHhhH
Q 003081 443 TAALHI-DDK-NSQISCAILLKSYSSVASDVLSGYHAVI-VPVIFISRFE--DDKYVSDLFEELWEENTSGDRVTLQLYL 517 (850)
Q Consensus 443 l~~~~~-~d~-~~r~~~~~~l~al~~~~~~~f~~~~~~v-lP~l~~~~~d--~~~~v~~~~~~v~~~l~~~~~~~i~~yl 517 (850)
+...+. +++ ..|..+..++.++.+..++....++..= .-.+..++.. .+...+.....++..+..+....-....
T Consensus 171 Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~ 250 (342)
T KOG2160|consen 171 LLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS 250 (342)
T ss_pred HHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 666665 333 3567788888888887655332222110 1112223333 2222333333444444332211111111
Q ss_pred HHHHHHHHHh-hcCCCHHHHHHHHHHHHHHHH
Q 003081 518 GEIVSLICEG-IASSSWSSKRKSAKAICKLGE 548 (850)
Q Consensus 518 ~eIl~ll~~~-L~d~s~~vr~~aa~alg~la~ 548 (850)
+..++..... ...-+|+++..+..++-.+..
T Consensus 251 ~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 251 SLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 2222333333 344577888876666555543
No 174
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.67 E-value=26 Score=41.64 Aligned_cols=159 Identities=14% Similarity=0.115 Sum_probs=107.9
Q ss_pred hHHHHHHhcCCchHHHHHHHHHHHHhcCCCh-----hhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcch
Q 003081 480 VPVIFISRFEDDKYVSDLFEELWEENTSGDR-----VTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESL 554 (850)
Q Consensus 480 lP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~-----~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l 554 (850)
=|.++.+...++.+||..+..++-+.-+-.+ ......++.=...+...|.|+-..||..|...+..+...+=..+
T Consensus 176 ~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i 255 (1005)
T KOG1949|consen 176 KPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMI 255 (1005)
T ss_pred hHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 4777777777777888887777766554211 12223333334567778899999999999998888877654444
Q ss_pred hhh-HHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 003081 555 SNY-HHVLLESIMKEVP-GRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQV 632 (850)
Q Consensus 555 ~~~-l~~llp~L~~~L~-~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l 632 (850)
.+. +..++..+...+. +...++|-.+++.+..++.+- .-.+.++.++|.+--.+.++...+|-+++..|-.+
T Consensus 256 P~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np------~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 256 PPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP------LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred CHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc------cchhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 443 5667777777774 334689999999888776421 12356788888888888889999999999887663
Q ss_pred HHHcCCchhHHhH
Q 003081 633 IKAFRDPKFFNII 645 (850)
Q Consensus 633 ~~~~~~~~~~~iv 645 (850)
+..+.-.|.+|+
T Consensus 330 -k~vra~~f~~I~ 341 (1005)
T KOG1949|consen 330 -KAVRAAKFWKIC 341 (1005)
T ss_pred -Hhhhhhhhhccc
Confidence 333333444444
No 175
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=89.47 E-value=41 Score=37.84 Aligned_cols=131 Identities=15% Similarity=0.152 Sum_probs=71.2
Q ss_pred hHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhcCCchh
Q 003081 374 TRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNS 453 (850)
Q Consensus 374 tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~~d~~~ 453 (850)
.|.+|+.++-.|+.+.+..+.+....++..++.....+++..- ..
T Consensus 227 rR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w-----------------------------------~~ 271 (370)
T PF08506_consen 227 RRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNW-----------------------------------RS 271 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-H-----------------------------------HH
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccH-----------------------------------HH
Confidence 3678999999998887777766666555555554322322111 11
Q ss_pred hHHHHHHHHHHHhhch----------h--hhhh-hHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHH
Q 003081 454 QISCAILLKSYSSVAS----------D--VLSG-YHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEI 520 (850)
Q Consensus 454 r~~~~~~l~al~~~~~----------~--~f~~-~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eI 520 (850)
+.++..++++++.... + .+.. +...++|-+. .-....+-++.-+.+.........+ +..+..+
T Consensus 272 KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~---~~~l~~~ 347 (370)
T PF08506_consen 272 KDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP---KEQLLQI 347 (370)
T ss_dssp HHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS----HHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC---HHHHHHH
Confidence 2233333344432210 0 1122 3344566654 2222334455444444444333322 3577889
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHH
Q 003081 521 VSLICEGIASSSWSSKRKSAKAI 543 (850)
Q Consensus 521 l~ll~~~L~d~s~~vr~~aa~al 543 (850)
++.+..+|.+++.-|+..||.|+
T Consensus 348 ~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 348 FPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcchhhhhhhhC
Confidence 99999999999999999999875
No 176
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=89.46 E-value=12 Score=44.94 Aligned_cols=154 Identities=16% Similarity=0.198 Sum_probs=88.2
Q ss_pred CCHhHHHHHHHHHHHhc-----cCC---hHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHH
Q 003081 128 PDKNVQDAMAHIWKSLV-----ADP---KRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRR 199 (850)
Q Consensus 128 p~~~VR~a~~~iw~~Lv-----~d~---~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~ 199 (850)
+++.+|.++.-....++ ..+ ...++++.+.+...|-.....++-..+.....|||++-.....+.+.+|+.
T Consensus 409 ~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~- 487 (574)
T smart00638 409 KQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLE- 487 (574)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcC-
Confidence 46667777644444443 221 123455566666666666655666668889999998743333333333322
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHH
Q 003081 200 IWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLV 279 (850)
Q Consensus 200 i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la 279 (850)
.-.+....+|.+|..+++.++..+ ...+.+.++|++.+. ....|+|..|+..++.-
T Consensus 488 -------~~~~~~~~iR~~Av~Alr~~a~~~-------------p~~v~~~l~~i~~n~---~e~~EvRiaA~~~lm~t- 543 (574)
T smart00638 488 -------GAEPLSTFIRLAAILALRNLAKRD-------------PRKVQEVLLPIYLNR---AEPPEVRMAAVLVLMET- 543 (574)
T ss_pred -------CCCCCCHHHHHHHHHHHHHHHHhC-------------chHHHHHHHHHHcCC---CCChHHHHHHHHHHHhc-
Confidence 113456789999987777554321 234667788887643 35689999998887754
Q ss_pred HhcCcccccchHHHHHHHHHhcc-ccchhhhhHHHH
Q 003081 280 KGAGIAIRPHLSDLVSCMLESLS-SLEDQGLNYIEL 314 (850)
Q Consensus 280 ~~~g~~l~P~lp~Lvp~LL~~Ls-~~ep~~~nyl~~ 314 (850)
.|-. .++..+.+.+. +..+|+.+|+..
T Consensus 544 -------~P~~-~~l~~ia~~l~~E~~~QV~sfv~S 571 (574)
T smart00638 544 -------KPSV-ALLQRIAELLNKEPNLQVASFVYS 571 (574)
T ss_pred -------CCCH-HHHHHHHHHHhhcCcHHHHHHhHH
Confidence 2332 33444444443 344566666543
No 177
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=89.36 E-value=64 Score=39.90 Aligned_cols=128 Identities=5% Similarity=-0.041 Sum_probs=76.6
Q ss_pred hhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHh
Q 003081 511 VTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTS 590 (850)
Q Consensus 511 ~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~ 590 (850)
...+.|+|-+++-+.. +....+|.....++|++|..+-.... .-+|.+..+|.+...-.|...+--|+-+.+-
T Consensus 964 ~LaKr~~P~lvkeLe~---~~~~aiRnNiV~am~D~C~~YTam~d----~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~ 1036 (1529)
T KOG0413|consen 964 RLAKRLMPMLVKELEY---NTAHAIRNNIVLAMGDICSSYTAMTD----RYIPMIAASLCDPSVIVRRQTIILLARLLQF 1036 (1529)
T ss_pred HHHHHHHHHHHHHHHh---hhHHHHhcceeeeehhhHHHHHHHHH----HhhHHHHHHhcCchHHHHHHHHHHHHHHHhh
Confidence 3445555554444433 23457888888889999987644443 4456666777776666777777667666541
Q ss_pred cccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCchhHHhHHHHHHhh
Q 003081 591 CHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEM 652 (850)
Q Consensus 591 ~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~~~~~~~iv~~~l~~~ 652 (850)
+-.-|. + ..++..+...+ +.++++|.-|=-|++.+++.-..--|+.-....+..+
T Consensus 1037 -~~vKw~-G----~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i~~l 1091 (1529)
T KOG0413|consen 1037 -GIVKWN-G----ELFIRFMLALL-DANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYIIAL 1091 (1529)
T ss_pred -hhhhcc-h----hhHHHHHHHHc-ccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHH
Confidence 111111 1 22333444333 5789999999999999999864333444444444444
No 178
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=89.22 E-value=1.9 Score=39.31 Aligned_cols=78 Identities=14% Similarity=0.165 Sum_probs=62.7
Q ss_pred HHhhHHHHHHHHHHhhcCCC----HHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Q 003081 513 LQLYLGEIVSLICEGIASSS----WSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSIS 588 (850)
Q Consensus 513 i~~yl~eIl~ll~~~L~d~s----~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~ 588 (850)
+++|.=.|++.+...+.|.+ ..-|..+..+++.+.+..|..+..++|+++..|..+|.. .+.++..+++...++
T Consensus 5 L~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~--~eL~~~al~~W~~~i 82 (107)
T smart00802 5 LKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI--PELRSLALRCWHVLI 82 (107)
T ss_pred HHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHH
Confidence 34555556666667666654 345888999999999999999999999999999999964 458999999999998
Q ss_pred Hhcc
Q 003081 589 TSCH 592 (850)
Q Consensus 589 ~~~~ 592 (850)
....
T Consensus 83 ~~L~ 86 (107)
T smart00802 83 KTLK 86 (107)
T ss_pred HhCC
Confidence 8665
No 179
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=89.18 E-value=7.3 Score=38.52 Aligned_cols=123 Identities=4% Similarity=0.057 Sum_probs=85.8
Q ss_pred HHhhHHHHHHHHHHhhc------------------CCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCh
Q 003081 513 LQLYLGEIVSLICEGIA------------------SSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLW 574 (850)
Q Consensus 513 i~~yl~eIl~ll~~~L~------------------d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~ 574 (850)
+.++++.|+|.+..... |..-++|.+|..++-.+-......+. +..++..+..+|.+ ..
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~--~~~~~~~v~~GL~D-~~ 79 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRID--ISEFLDRVEAGLKD-EH 79 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS--H
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHhhcCC-cH
Confidence 56777888888776542 44578999999999999987666553 67789999999988 88
Q ss_pred hhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhc--------CHHHHHHHHHHHHHHHHHcCC
Q 003081 575 EGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKK--------IKKYREAAFSCLEQVIKAFRD 638 (850)
Q Consensus 575 ~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~--------~~~~R~~Al~~Lg~l~~~~~~ 638 (850)
+.|.-....+..++..+...+......+.+.+-+.+....+.+ ..+..+.++++...+-..+++
T Consensus 80 DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~ 151 (169)
T PF08623_consen 80 DIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIPG 151 (169)
T ss_dssp HHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 9999888888888877766554434456666655554444332 456778888888887666654
No 180
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.10 E-value=61 Score=39.25 Aligned_cols=189 Identities=17% Similarity=0.173 Sum_probs=98.9
Q ss_pred HHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHH
Q 003081 342 TLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFA 421 (850)
Q Consensus 342 al~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a 421 (850)
|+..++..-.+++.+.|+..+...+.+ +...-|+...+.+..|+.+++..-+- +|.-|.+.|.++....-.++..
T Consensus 339 AITtLLKTG~e~sv~rLm~qI~~fv~d-isDeFKivvvdai~sLc~~fp~k~~~----~m~FL~~~Lr~eGg~e~K~aiv 413 (865)
T KOG1078|consen 339 AITTLLKTGTESSVDRLMKQISSFVSD-ISDEFKIVVVDAIRSLCLKFPRKHTV----MMNFLSNMLREEGGFEFKRAIV 413 (865)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHh-ccccceEEeHHHHHHHHhhccHHHHH----HHHHHHHHHHhccCchHHHHHH
Confidence 344444444444555555555555543 35566777777777777776532211 1222222332333344455556
Q ss_pred HHHHHHhhhCCHH---HHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhchhhh--hhhHhhHhHHHHHHhcCCchHHHH
Q 003081 422 SACASVLKYATPS---QAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVL--SGYHAVIVPVIFISRFEDDKYVSD 496 (850)
Q Consensus 422 ~alg~L~~~~~~~---~v~~li~~l~~~~~~d~~~r~~~~~~l~al~~~~~~~f--~~~~~~vlP~l~~~~~d~~~~v~~ 496 (850)
.++-.+++..++. .+..+++.+ +|-+++..+..+++-+.+-.|-.- ..|...+ +--.+-.+..||.
T Consensus 414 d~Ii~iie~~pdsKe~~L~~LCefI-----EDce~~~i~~rILhlLG~EgP~a~~Pskyir~i----yNRviLEn~ivRa 484 (865)
T KOG1078|consen 414 DAIIDIIEENPDSKERGLEHLCEFI-----EDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFI----YNRVILENAIVRA 484 (865)
T ss_pred HHHHHHHHhCcchhhHHHHHHHHHH-----HhccchHHHHHHHHHHhccCCCCCCcchhhHHH----hhhhhhhhhhhHH
Confidence 6666666644432 233344333 344555556666666654433211 1122211 1111123344665
Q ss_pred HHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 003081 497 LFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGE 548 (850)
Q Consensus 497 ~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~ 548 (850)
.+...+..+..+.. --.+.|..++.+++.|++.++|..|...+..+-.
T Consensus 485 aAv~alaKfg~~~~----~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 485 AAVSALAKFGAQDV----VLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred HHHHHHHHHhcCCC----CccccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 55555444432221 1235677888899999999999999999887774
No 181
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=88.88 E-value=28 Score=40.33 Aligned_cols=77 Identities=10% Similarity=0.244 Sum_probs=59.2
Q ss_pred hHHhhHHHHHHHHHHhh----------cCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCC--CChhhHHH
Q 003081 512 TLQLYLGEIVSLICEGI----------ASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPG--RLWEGKDA 579 (850)
Q Consensus 512 ~i~~yl~eIl~ll~~~L----------~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~--r~~~gKe~ 579 (850)
-+.+|+-++++-++.|+ .|..|.+|-.||..++.++..++.......+.|+..+.+++.+ +.|...=.
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YG 360 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYG 360 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhh
Confidence 46799999999888875 2568999999999999999998876666568888999999954 55665555
Q ss_pred HHHHHHHHH
Q 003081 580 LLYAIGSIS 588 (850)
Q Consensus 580 vL~aL~~l~ 588 (850)
.+..|..|.
T Consensus 361 ai~gL~~lg 369 (576)
T KOG2549|consen 361 AIAGLSELG 369 (576)
T ss_pred HHHHHHHhh
Confidence 555554443
No 182
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=88.56 E-value=11 Score=43.72 Aligned_cols=104 Identities=17% Similarity=0.069 Sum_probs=74.2
Q ss_pred hhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHH-HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCch
Q 003081 113 HLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEH-LDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFD 191 (850)
Q Consensus 113 ~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~-~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~ 191 (850)
.+..++-.++|..--|...||.-.+.|...++..- ..|++- +..++..|.+.+-|++.-||.-|..+|.-+-+-..-+
T Consensus 88 ~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v-~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne 166 (885)
T COG5218 88 LVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVV-REIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE 166 (885)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh
Confidence 45667888889999999999999999998887432 345554 5778888889999999999999998888775321111
Q ss_pred hhhHHHHHHHHHHHHHhccCcHHHHHHHHH
Q 003081 192 QVGKHLRRIWTAAFRAMDDIKETVRTAGDK 221 (850)
Q Consensus 192 ~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~ 221 (850)
+ .....++. +-+-.|+...||.+|..
T Consensus 167 e--n~~~n~l~--~~vqnDPS~EVRr~all 192 (885)
T COG5218 167 E--NRIVNLLK--DIVQNDPSDEVRRLALL 192 (885)
T ss_pred H--HHHHHHHH--HHHhcCcHHHHHHHHHH
Confidence 1 11112221 22357999999998763
No 183
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.09 E-value=71 Score=38.79 Aligned_cols=129 Identities=12% Similarity=0.118 Sum_probs=75.2
Q ss_pred HHHHHHHhhCCCChhH-HHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccC-cHHHHHHHHHHHHHHHHHHHHhhh
Q 003081 158 IFDDLLIQSGSRLWRS-REASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDI-KETVRTAGDKLCRSVTSLTIRLCD 235 (850)
Q Consensus 158 Il~~Ll~~l~~~~wRV-Reaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~-k~~VR~aA~~~~~~L~~~~~r~~~ 235 (850)
.+|++- ..+.+.|+ |.-.++-+|.-++.....++.+ .+...+..+++|. .-.||-++..+.+....
T Consensus 489 llpEl~--~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~---l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vD------- 556 (978)
T KOG1993|consen 489 LLPELA--NDHGNSRIIRRRVAWILGQWVSVQQKLELKP---LLYCAFLNLLQDQNDLVVRLTTARTLKLVVD------- 556 (978)
T ss_pred hCHHhh--hcccchhHHHHHHHHHHhhhhheechHhHHH---HHHHHHHHhcCccccceeehHHHHHHHHhhh-------
Confidence 444444 23345665 6777777888777555555544 3444455667776 55688887766665432
Q ss_pred cccCcchhHHhHHHHhHHHHhhccCCC--chhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHh
Q 003081 236 VTLTEISDARQSMDIVLPFLLAEGILS--KVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLES 300 (850)
Q Consensus 236 ~~~~~~~~~~~~l~~lLP~Ll~~gL~s--~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~ 300 (850)
.-.-+.....++++.+--.+. .+.. +.-+.|-..+.+++.++...++.++||..+++..+-.+
T Consensus 557 D~nF~~dsFlp~lenlf~~lf--kll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~L 621 (978)
T KOG1993|consen 557 DWNFSEDSFLPYLENLFVLLF--KLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLL 621 (978)
T ss_pred hccCChhhhhhhHHHHHHHHH--HHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 111111122333332222222 1111 12356778899999999999999999998887655444
No 184
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=87.65 E-value=6.6 Score=35.75 Aligned_cols=99 Identities=15% Similarity=0.122 Sum_probs=68.4
Q ss_pred hhchhhhhHHHHHHhhcCC----CCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH
Q 003081 109 ALKPHLRLLIPKLVRFQYD----PDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADI 184 (850)
Q Consensus 109 ~l~p~L~~lvp~L~r~~~D----p~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~L 184 (850)
.+++++--++-.+=....| ....-|+.+......+++-.+..+..+.+.|+..|...+..+ ..|+.++.+-..+
T Consensus 4 fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~f 81 (107)
T PF08064_consen 4 FLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCF 81 (107)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHH
Confidence 4555554444444444445 344445555555555654334456667788888888887766 7899999999999
Q ss_pred HccCCchhhhHHHHHHHHHHHHHhc
Q 003081 185 IQGRKFDQVGKHLRRIWTAAFRAMD 209 (850)
Q Consensus 185 l~~~~~~~l~~~L~~i~~~l~~~ld 209 (850)
++.-+.+++.+.+++++..++...+
T Consensus 82 i~~L~~~~l~~ll~~~~~~l~~~~~ 106 (107)
T PF08064_consen 82 IKTLDEEDLGPLLDQIFAILLPLWD 106 (107)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHhcc
Confidence 9998889999999999888876543
No 185
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=87.42 E-value=1.7 Score=51.24 Aligned_cols=129 Identities=14% Similarity=0.116 Sum_probs=87.1
Q ss_pred chHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHH
Q 003081 73 PDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTID 152 (850)
Q Consensus 73 p~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~ 152 (850)
-..|-++++.+-+..+---||+|..|+|-|+-+..++ ++..+.-| --.-||+||..+.-+.+....++. .
T Consensus 553 nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~----~~s~V~lL---ses~N~HVRyGaA~ALGIaCAGtG---~ 622 (929)
T KOG2062|consen 553 NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ----LPSTVSLL---SESYNPHVRYGAAMALGIACAGTG---L 622 (929)
T ss_pred hhhHHHhhcccccccchHHHHHHHHHheeeEecChhh----chHHHHHH---hhhcChhhhhhHHHHHhhhhcCCC---c
Confidence 3556677777655544567899999999888665443 23344444 344599999998766665554432 1
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHH
Q 003081 153 EHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETV 215 (850)
Q Consensus 153 ~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~V 215 (850)
.---.+|+.+. .|+.-=||++||.|++-++--. .+++.|....+-..+.++..|.|+.+
T Consensus 623 ~eAi~lLepl~---~D~~~fVRQgAlIa~amIm~Q~-t~~~~pkv~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 623 KEAINLLEPLT---SDPVDFVRQGALIALAMIMIQQ-TEQLCPKVNGFRKQLEKVINDKHEDG 681 (929)
T ss_pred HHHHHHHhhhh---cChHHHHHHHHHHHHHHHHHhc-ccccCchHHHHHHHHHHHhhhhhhHH
Confidence 11223444443 4777889999999998876433 36777888888888889999988865
No 186
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=87.33 E-value=26 Score=38.64 Aligned_cols=125 Identities=10% Similarity=0.188 Sum_probs=85.7
Q ss_pred HhhHHHHHHHHHHhhcCCCHHHHHHHH-HHHHHHHHHhCcchhhhHHHHHHHHHHh----cCC---CChhhHHHHHHHHH
Q 003081 514 QLYLGEIVSLICEGIASSSWSSKRKSA-KAICKLGEILGESLSNYHHVLLESIMKE----VPG---RLWEGKDALLYAIG 585 (850)
Q Consensus 514 ~~yl~eIl~ll~~~L~d~s~~vr~~aa-~alg~la~~~g~~l~~~l~~llp~L~~~----L~~---r~~~gKe~vL~aL~ 585 (850)
...++.+++.+..--....+..|.... .+++.++.++|..+.+.++.++..+.+. +.. .-++.|...++-+.
T Consensus 66 ~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~ 145 (319)
T PF08767_consen 66 NNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLR 145 (319)
T ss_dssp HHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHH
Confidence 344555555444333334444555443 5677788888887777766666554433 322 23788999999999
Q ss_pred HHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCC
Q 003081 586 SISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRD 638 (850)
Q Consensus 586 ~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~~ 638 (850)
.+...|-..+..-.++....++..+.|.++..+..+...++.+|..++..+..
T Consensus 146 ~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 146 AINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 99988765553323345677889999999999999999999999999988743
No 187
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.18 E-value=88 Score=38.87 Aligned_cols=114 Identities=15% Similarity=0.193 Sum_probs=65.0
Q ss_pred hhHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhc----cC-ChHHHHHHHHHHHHHHHHhhC
Q 003081 93 RGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLV----AD-PKRTIDEHLDLIFDDLLIQSG 167 (850)
Q Consensus 93 ~gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv----~d-~~~~i~~~~~~Il~~Ll~~l~ 167 (850)
.-+..++|.|++--|+.+.+.|-..+=.++.-.-+|++.|++.+..|.-.++ -+ ++-.++++.|-++..+-..++
T Consensus 566 Ci~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~ 645 (1014)
T KOG4524|consen 566 CIVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLN 645 (1014)
T ss_pred hhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhc
Confidence 4556788888887788888776533333344568999999999755444443 22 344667777777777766654
Q ss_pred CC--ChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccC
Q 003081 168 SR--LWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDI 211 (850)
Q Consensus 168 ~~--~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~ 211 (850)
.- ++|+-. ..++ +++ .+.-...+|+.+++...|..+|--
T Consensus 646 ~~~~s~~~~~--Vl~v--Vl~-~s~~~~i~~l~dvvq~i~~~lD~y 686 (1014)
T KOG4524|consen 646 TSGMSPRVPD--VLMV--VLQ-YSDYGTIPNLKDVVQTIFKLLDYY 686 (1014)
T ss_pred cCCCCchhHH--HHHH--Hhh-cCCCCchhhHHHHHHHHHHHHHHh
Confidence 21 222211 1111 111 111123566666666666666643
No 188
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=87.14 E-value=2.4 Score=37.48 Aligned_cols=59 Identities=7% Similarity=0.221 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHH
Q 003081 530 SSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVP--GRLWEGKDALLYAIGSIS 588 (850)
Q Consensus 530 d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~--~r~~~gKe~vL~aL~~l~ 588 (850)
+++|.+|..||..++.++..++.......+.++..+.+.+. .+++...-..+.+|..+.
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG 77 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 56899999999999999999987665556889999999985 345666666666666663
No 189
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=87.07 E-value=51 Score=36.04 Aligned_cols=138 Identities=14% Similarity=0.113 Sum_probs=93.3
Q ss_pred CchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhc
Q 003081 490 DDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEV 569 (850)
Q Consensus 490 ~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L 569 (850)
..-.||..+.++++...-..+..+++.++.++--+...+.+.+.+........+..+...+|.. -++..+|-.++.
T Consensus 109 asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~--~F~~~lwl~ii~-- 184 (307)
T PF04118_consen 109 ASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK--YFWQCLWLCIIT-- 184 (307)
T ss_pred HHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh--HHHHHHHHHHhc--
Confidence 3456888888888876655556889999999999999999999999999999999999988875 246667766663
Q ss_pred CCCChhhHHHHHHHHHHHHHhcccc---ccc-----CCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcC
Q 003081 570 PGRLWEGKDALLYAIGSISTSCHKD---ISA-----EDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFR 637 (850)
Q Consensus 570 ~~r~~~gKe~vL~aL~~l~~~~~~~---l~~-----~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~ 637 (850)
++..|..++.-+..-..+.... ... -..+-...+++++...+.+++.-++|.++..| +..+|
T Consensus 185 ---sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlL---l~~~P 254 (307)
T PF04118_consen 185 ---SPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLL---LSHFP 254 (307)
T ss_pred ---CcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHH---HHhCC
Confidence 3445555554443322221100 000 01233456677888888888888888877664 44555
No 190
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=86.93 E-value=3.8 Score=48.43 Aligned_cols=188 Identities=12% Similarity=0.139 Sum_probs=118.0
Q ss_pred HHHHHHHHHHhhc-CCchhhHHHHHHHHHHHhhchhhh--hhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhh
Q 003081 436 AQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVL--SGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVT 512 (850)
Q Consensus 436 v~~li~~l~~~~~-~d~~~r~~~~~~l~al~~~~~~~f--~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~ 512 (850)
..++++.+.+++. .|...|. .++..+-++ .+++ +.+.++++|.+..|..|.++.+|+........+++-.+..
T Consensus 328 q~~i~p~l~kLF~~~Dr~iR~---~LL~~i~~~-i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 328 QVRIIPVLLKLFKSPDRQIRL---LLLQYIEKY-IDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred ccchhhhHHHHhcCcchHHHH---HHHHhHHHH-hhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence 3445666666664 3444453 333333322 2233 2466789999999999999999988878777777754321
Q ss_pred HHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHH-HHHHHhcCCCChhhHHHHHHHHHHHHHhc
Q 003081 513 LQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLL-ESIMKEVPGRLWEGKDALLYAIGSISTSC 591 (850)
Q Consensus 513 i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~ll-p~L~~~L~~r~~~gKe~vL~aL~~l~~~~ 591 (850)
.--.|++..+.+.-.|.+..+|....-|+|.++..+..... ..++ -....++++--.+-|.+-+.+|.+..
T Consensus 404 --~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R---~~vL~~aftralkdpf~paR~a~v~~l~at~--- 475 (690)
T KOG1243|consen 404 --NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVR---KRVLASAFTRALKDPFVPARKAGVLALAATQ--- 475 (690)
T ss_pred --hhcHHHHHHHHhhCccccCcccccceeeecccccccchhhh---ccccchhhhhhhcCCCCCchhhhhHHHhhcc---
Confidence 23356777777776788888888888888877654432221 2222 22333455444455666665554332
Q ss_pred ccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCC
Q 003081 592 HKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRD 638 (850)
Q Consensus 592 ~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~~ 638 (850)
+.+. ......+|+|.+.-...+.+..+|..|+.++..++.....
T Consensus 476 -~~~~--~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~ 519 (690)
T KOG1243|consen 476 -EYFD--QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEK 519 (690)
T ss_pred -cccc--hhhhhhhccccccccccCcccchhhHHHHHHHHHHhhhhh
Confidence 2221 2345667778777777788889999999998888877643
No 191
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.93 E-value=1.5 Score=44.26 Aligned_cols=90 Identities=14% Similarity=0.060 Sum_probs=70.2
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCC
Q 003081 520 IVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAED 599 (850)
Q Consensus 520 Il~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~ 599 (850)
.++++...|.+.+..-|-.|-..+-++....|+.+.|.+|++++.|..+|..|+-+.+...|+++..++...+ -+....
T Consensus 115 yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~-~vG~aL 193 (262)
T KOG3961|consen 115 YLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVG-CVGAAL 193 (262)
T ss_pred HHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc-ccchhh
Confidence 4566677777777888889999999999999999999999999999999999988888888988888875432 111123
Q ss_pred CCchHHHHHHH
Q 003081 600 PTTPFAIVDMV 610 (850)
Q Consensus 600 ~~~~~~i~~~l 610 (850)
.||..+++|.+
T Consensus 194 VPfYRQlLp~~ 204 (262)
T KOG3961|consen 194 VPFYRQLLPVL 204 (262)
T ss_pred hhHHHHhhhhh
Confidence 45556666544
No 192
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=86.91 E-value=1.3e+02 Score=40.72 Aligned_cols=59 Identities=17% Similarity=0.121 Sum_probs=47.7
Q ss_pred hHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhh-hHHHHHHHHHHhcC
Q 003081 512 TLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSN-YHHVLLESIMKEVP 570 (850)
Q Consensus 512 ~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~-~l~~llp~L~~~L~ 570 (850)
.+...++.++.++..++..++..+-+.+..|+..++...|..|.+ +-..++..+.+.+.
T Consensus 1453 ~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~lf~ 1512 (1780)
T PLN03076 1453 TVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAAN 1512 (1780)
T ss_pred HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 456677888899999988889999999999999999999998876 45666666665553
No 193
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=86.63 E-value=5.5 Score=48.15 Aligned_cols=132 Identities=11% Similarity=0.146 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Q 003081 150 TIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSL 229 (850)
Q Consensus 150 ~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~ 229 (850)
..+++.+.+.+.+-......+-..+..+..|||++-.....+.+.+|+.. -.+....+|.+|..+++.++..
T Consensus 483 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~~i~~l~~~i~~--------~~~~~~~~R~~Ai~Alr~~~~~ 554 (618)
T PF01347_consen 483 IIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHPESIPVLLPYIEG--------KEEVPHFIRVAAIQALRRLAKH 554 (618)
T ss_dssp --GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GGGHHHHHTTSTT--------SS-S-HHHHHHHHHTTTTGGGT
T ss_pred hHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCchhhHHHHhHhhh--------ccccchHHHHHHHHHHHHHhhc
Confidence 34445556666555566666667889999999998322222222222111 0134567898887555433211
Q ss_pred HHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhcc-ccchhh
Q 003081 230 TIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLS-SLEDQG 308 (850)
Q Consensus 230 ~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls-~~ep~~ 308 (850)
....+.+.++|.+.+. ....|+|-.|..+|+.- .|-. .++..+.+.+. +..+|+
T Consensus 555 -------------~~~~v~~~l~~I~~n~---~e~~EvRiaA~~~lm~~--------~P~~-~~l~~i~~~l~~E~~~QV 609 (618)
T PF01347_consen 555 -------------CPEKVREILLPIFMNT---TEDPEVRIAAYLILMRC--------NPSP-SVLQRIAQSLWNEPSNQV 609 (618)
T ss_dssp --------------HHHHHHHHHHHHH-T---TS-HHHHHHHHHHHHHT-----------H-HHHHHHHHHHTT-S-HHH
T ss_pred -------------CcHHHHHHHHHHhcCC---CCChhHHHHHHHHHHhc--------CCCH-HHHHHHHHHHhhCchHHH
Confidence 1334678888887743 35678999998887763 1322 44555555554 344677
Q ss_pred hhHHHH
Q 003081 309 LNYIEL 314 (850)
Q Consensus 309 ~nyl~~ 314 (850)
.+|+..
T Consensus 610 ~sfv~S 615 (618)
T PF01347_consen 610 ASFVYS 615 (618)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
No 194
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=86.62 E-value=1.2e+02 Score=39.68 Aligned_cols=166 Identities=13% Similarity=0.023 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCCCHHH
Q 003081 456 SCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSS 535 (850)
Q Consensus 456 ~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~~v 535 (850)
..-.++..+.+++++. +..++|.+..-...+.+.+|-.+.++.+.+...-...+..-.+.+....+..+.|.+.+|
T Consensus 241 ~~he~i~~L~~~~p~l----l~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~v 316 (1266)
T KOG1525|consen 241 KYHELILELWRIAPQL----LLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEV 316 (1266)
T ss_pred HHHHHHHHHHHhhHHH----HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhh
Confidence 3445556666666543 344777776555555777887777777766554322222224567777778889999999
Q ss_pred HHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHh
Q 003081 536 KRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACR 615 (850)
Q Consensus 536 r~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~ 615 (850)
|..+.....++-..-+.... -..++-.+.... -+++.|....-.++... ...+ .-.+.+.+++.+...++
T Consensus 317 R~~~v~~~~~~l~~~~~~~~--~~~~~~~l~~~~--~D~~~rir~~v~i~~~~---v~~~---~l~~~~~ll~~~~eR~r 386 (1266)
T KOG1525|consen 317 RMECVESIKQCLLNNPSIAK--ASTILLALRERD--LDEDVRVRTQVVIVACD---VMKF---KLVYIPLLLKLVAERLR 386 (1266)
T ss_pred hhhHHHHhHHHHhcCchhhh--HHHHHHHHHhhc--CChhhhheeeEEEEEee---hhHh---hhhhhHHHHHHHHHHHh
Confidence 99888877776654222111 011111222111 12333322211111000 0001 11233447777777788
Q ss_pred hcCHHHHHHHHHHHHHHHHH
Q 003081 616 KKIKKYREAAFSCLEQVIKA 635 (850)
Q Consensus 616 r~~~~~R~~Al~~Lg~l~~~ 635 (850)
++...+|+.|+.-|.++.+.
T Consensus 387 DKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 387 DKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 89999999999999999883
No 195
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=85.54 E-value=54 Score=39.63 Aligned_cols=97 Identities=15% Similarity=0.182 Sum_probs=58.5
Q ss_pred hHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCC---ChhhHHHHHHHHHHHH
Q 003081 512 TLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGR---LWEGKDALLYAIGSIS 588 (850)
Q Consensus 512 ~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r---~~~gKe~vL~aL~~l~ 588 (850)
....|.+.+.+.+....+..+...+..+.++||.+.. +.+++.|..-+.++ +-..|-.++.||..+.
T Consensus 483 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~ 552 (618)
T PF01347_consen 483 IIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLA 552 (618)
T ss_dssp --GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGG
T ss_pred hHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHh
Confidence 3456777777777777777788889989999986542 34666666666555 3456777777776553
Q ss_pred HhcccccccCCCCchHHHHHHHHHHHh--hcCHHHHHHHHHHH
Q 003081 589 TSCHKDISAEDPTTPFAIVDMVSSACR--KKIKKYREAAFSCL 629 (850)
Q Consensus 589 ~~~~~~l~~~~~~~~~~i~~~l~~e~~--r~~~~~R~~Al~~L 629 (850)
..+. ..+.+++..-.. ..+.++|.+|+..|
T Consensus 553 ~~~~-----------~~v~~~l~~I~~n~~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 553 KHCP-----------EKVREILLPIFMNTTEDPEVRIAAYLIL 584 (618)
T ss_dssp GT-H-----------HHHHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred hcCc-----------HHHHHHHHHHhcCCCCChhHHHHHHHHH
Confidence 3222 233334443332 24678999997654
No 196
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=85.23 E-value=8.6 Score=40.87 Aligned_cols=136 Identities=11% Similarity=0.128 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHH-HHHHhccCcHHHHHHHHHHHHHHHH
Q 003081 150 TIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTA-AFRAMDDIKETVRTAGDKLCRSVTS 228 (850)
Q Consensus 150 ~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~-l~~~ldD~k~~VR~aA~~~~~~L~~ 228 (850)
.+.-||+.++..++.- .+-..|+||...+ =...+..++.||+-+.+.. ..+-+.|. .+-.......+.|
T Consensus 194 ELq~YF~kvisal~dE---s~~~~r~aAl~sL---r~dsGlhQLvPYFi~f~~eqit~Nl~nl--~~LtTv~~m~~sL-- 263 (450)
T COG5095 194 ELQMYFDKVISALLDE---SDEQTRDAALESL---RNDSGLHQLVPYFIHFFNEQITKNLKNL--EKLTTVVMMYSSL-- 263 (450)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHh---ccCccHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHH--
Confidence 3455777777766432 2345677766543 3345566777776654321 11111111 0111111111211
Q ss_pred HHHHhhhcccCcchhHHhHHHHhHHHHh----hccCCCchh-----HHHHHHHHHHHHHHHhcCcccccchHHHHHHHHH
Q 003081 229 LTIRLCDVTLTEISDARQSMDIVLPFLL----AEGILSKVD-----SISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLE 299 (850)
Q Consensus 229 ~~~r~~~~~~~~~~~~~~~l~~lLP~Ll----~~gL~s~~~-----evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~ 299 (850)
++.. .....++++.++|-++ .+.+.+... .+|.+|...+.-++++.+..-+..-|.+...++.
T Consensus 264 -----L~N~---~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllK 335 (450)
T COG5095 264 -----LKNK---YIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLK 335 (450)
T ss_pred -----hcCC---ceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHH
Confidence 1111 1223456666666554 333333222 3999999999999999887766666777777777
Q ss_pred hccc
Q 003081 300 SLSS 303 (850)
Q Consensus 300 ~Ls~ 303 (850)
++-+
T Consensus 336 afLD 339 (450)
T COG5095 336 AFLD 339 (450)
T ss_pred HHHh
Confidence 6644
No 197
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=85.00 E-value=18 Score=41.75 Aligned_cols=149 Identities=14% Similarity=0.113 Sum_probs=97.3
Q ss_pred HHHHHhhhcCCchHHHHHHHHhccchhhh----hhhhHHhhHHHHHH----HhhhhhchhhhhHHHHHHhhcC-------
Q 003081 62 ELCNLANEMGQPDLIYKFMDLANYQVSLN----SKRGAAFGFSKIAK----QAGDALKPHLRLLIPKLVRFQY------- 126 (850)
Q Consensus 62 ~l~~lA~~~g~p~lv~~fm~la~~~~~w~----sr~gAa~gl~~I~~----~~~~~l~p~L~~lvp~L~r~~~------- 126 (850)
-|.+|.+|-|=..|++.|.......-.-| --+.- +-+..++. ...=.|+|||.+++|.++.|.-
T Consensus 227 AL~sL~TDsGL~~LlPyFv~fIae~vs~ni~~~nL~lL-~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~ 305 (576)
T KOG2549|consen 227 ALQSLETDSGLQQLLPYFVTFIAEGVSVNIVQNNLELL-IYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLR 305 (576)
T ss_pred HHHhhccCccHHHHHHHHHHHHhhheeeccccccHHHH-HHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCC
Confidence 47778888888899999998663321111 11222 22222222 2223788999999999997654
Q ss_pred ---CCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCC--ChhHHHHHHHHHHHHHccCCchhhhHHHHHHH
Q 003081 127 ---DPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSR--LWRSREASCLSLADIIQGRKFDQVGKHLRRIW 201 (850)
Q Consensus 127 ---Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~--~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~ 201 (850)
|.+=.+|+-+......+..+.......--..|+..+.+.+.|+ .|-...++...|..|-...-.--+.|.|.+.+
T Consensus 306 p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~ 385 (576)
T KOG2549|consen 306 PELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELGHEVIRTVILPNLKEYN 385 (576)
T ss_pred ccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhhhhhhheeccchHHHH
Confidence 3344588888777777776655444444567888888888664 68889999988877744221123567788888
Q ss_pred HHHHHHhccC
Q 003081 202 TAAFRAMDDI 211 (850)
Q Consensus 202 ~~l~~~ldD~ 211 (850)
..+...+++.
T Consensus 386 ~~l~~~l~~~ 395 (576)
T KOG2549|consen 386 ERLQSVLDVE 395 (576)
T ss_pred HHhhhhcccc
Confidence 8777777653
No 198
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.95 E-value=1.5e+02 Score=39.60 Aligned_cols=225 Identities=12% Similarity=0.060 Sum_probs=129.4
Q ss_pred HHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHH-HHHHHHHHHHhhc--CCchhhHHHHHHHHHHHhhchhhh-hhhHhhH
Q 003081 404 LFPVVKEEKSAAAKRAFASACASVLKYATPSQ-AQKLIEETAALHI--DDKNSQISCAILLKSYSSVASDVL-SGYHAVI 479 (850)
Q Consensus 404 Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~-v~~li~~l~~~~~--~d~~~r~~~~~~l~al~~~~~~~f-~~~~~~v 479 (850)
+++.+ .-.|+-.|=.++.+++++....++.. +..+.....+.+. .|+..|..-..+++.+-++.+..- ..++..-
T Consensus 881 ~~~sl-~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~ 959 (2067)
T KOG1822|consen 881 IVNSL-INPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTS 959 (2067)
T ss_pred Hhhhh-ccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccH
Confidence 33444 45778888788888999988766543 3344444444443 467778888888999988875432 2344443
Q ss_pred hHHHHHHhcCCch-HHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhh-cCC--CHHHHHHHHHHHH------HHHHH
Q 003081 480 VPVIFISRFEDDK-YVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGI-ASS--SWSSKRKSAKAIC------KLGEI 549 (850)
Q Consensus 480 lP~l~~~~~d~~~-~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L-~d~--s~~vr~~aa~alg------~la~~ 549 (850)
+.+++.-+.|+.. .|+......+.-+..+.+...+-|....+.++...+ +.+ ..++++.--+++. .+...
T Consensus 960 v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alitt 1039 (2067)
T KOG1822|consen 960 VSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITT 1039 (2067)
T ss_pred HHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHh
Confidence 4455555666544 666655555555555555566788888888887774 443 4567776666666 77777
Q ss_pred hCcchhhhHH--H---HHH--HHHHhc-CCC-ChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHH
Q 003081 550 LGESLSNYHH--V---LLE--SIMKEV-PGR-LWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKK 620 (850)
Q Consensus 550 ~g~~l~~~l~--~---llp--~L~~~L-~~r-~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~ 620 (850)
.|+.+.+... . +-. ..-.++ ... +.......+..|-.+-.-.. ..-..+.+++.+...++-...-
T Consensus 1040 lgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFap------r~~n~~~lV~~L~~~l~s~~~i 1113 (2067)
T KOG1822|consen 1040 LGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAP------RHVNLDSLVLQLCSLLSSSYLI 1113 (2067)
T ss_pred cccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcc------hhccHHHHHHHHHHHhcchhhh
Confidence 7776665421 0 101 011111 121 23333333333333321111 1123456666666666666667
Q ss_pred HHHHHHHHHHHHHHH
Q 003081 621 YREAAFSCLEQVIKA 635 (850)
Q Consensus 621 ~R~~Al~~Lg~l~~~ 635 (850)
+|++++.|+..+.+.
T Consensus 1114 ~r~~~~~clrql~~R 1128 (2067)
T KOG1822|consen 1114 LRRASFSCLRQLVQR 1128 (2067)
T ss_pred hhhhHHhhhhHHhHH
Confidence 788888887775543
No 199
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=84.92 E-value=18 Score=42.57 Aligned_cols=119 Identities=16% Similarity=0.109 Sum_probs=77.1
Q ss_pred HHhhhcCCchHHHHHHHHhccchhhhhhhhHHhhHHHHHHH---hhhhhchhhh-hHHHHHHhhcCCCCHhHHHHHHHHH
Q 003081 65 NLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQ---AGDALKPHLR-LLIPKLVRFQYDPDKNVQDAMAHIW 140 (850)
Q Consensus 65 ~lA~~~g~p~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~---~~~~l~p~L~-~lvp~L~r~~~Dp~~~VR~a~~~iw 140 (850)
.|-+.+.+-+...+++++....+ ..-+|++ +|+|+.- .+..-..++. ..|-+|..|.+||.+++|.......
T Consensus 410 aL~tg~~~~dv~~plvqll~dp~--~~i~~~~--lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~L 485 (678)
T KOG1293|consen 410 ALRTGLKRNDVAQPLVQLLMDPE--IMIMGIT--LGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVL 485 (678)
T ss_pred HHHcCCccchhHHHHHHHhhCcc--hhHHHHH--HHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHH
Confidence 34455566678888888773332 2223333 3444332 2221122332 6788889999999999999999999
Q ss_pred HHhccCChHHHHHHH-HH-HHHHHHHhhCCCChhHHHHHHHHHHHHHcc
Q 003081 141 KSLVADPKRTIDEHL-DL-IFDDLLIQSGSRLWRSREASCLSLADIIQG 187 (850)
Q Consensus 141 ~~Lv~d~~~~i~~~~-~~-Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~ 187 (850)
..++-+........+ .. -...+..-++|++|-|.|.+-.-+.+|+-+
T Consensus 486 r~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 486 RHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 988876654333222 22 334456667999999999999888888755
No 200
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=84.83 E-value=9.3 Score=34.81 Aligned_cols=99 Identities=17% Similarity=0.120 Sum_probs=69.7
Q ss_pred hhhchhhhhHHHHHHhhcCCCC---Hh-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q 003081 108 DALKPHLRLLIPKLVRFQYDPD---KN-VQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLAD 183 (850)
Q Consensus 108 ~~l~p~L~~lvp~L~r~~~Dp~---~~-VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~ 183 (850)
+.+++++-.++-..-.-..|+. |. -|..+....+.+++-....+..+.+.|+-.|..++..+ ..|..++.+-..
T Consensus 3 ~fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~--eL~~~al~~W~~ 80 (107)
T smart00802 3 DFLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIP--ELRSLALRCWHV 80 (107)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHH
Confidence 3556666666666666667777 22 14444445555554334456777788888888888765 489999999999
Q ss_pred HHccCCchhhhHHHHHHHHHHHHHh
Q 003081 184 IIQGRKFDQVGKHLRRIWTAAFRAM 208 (850)
Q Consensus 184 Ll~~~~~~~l~~~L~~i~~~l~~~l 208 (850)
++..-+.+++.+.+.+++..++...
T Consensus 81 ~i~~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 81 LIKTLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 9998888888888888887776554
No 201
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.70 E-value=1.6e+02 Score=39.51 Aligned_cols=137 Identities=14% Similarity=0.147 Sum_probs=81.9
Q ss_pred cCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCc
Q 003081 259 GILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSP 338 (850)
Q Consensus 259 gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~ 338 (850)
.+...++-.|-.+..+++.++...+.. ||+..+...++..+.+..+.... ...
T Consensus 884 sl~~~~p~~rc~~~ea~arLaq~v~~~--~f~a~~aq~~fdklas~~d~i~R------------------~gh------- 936 (2067)
T KOG1822|consen 884 SLINPNPKLRCAAAEALARLAQVVGSA--PFVASLAQNSFDKLASARDPITR------------------TGH------- 936 (2067)
T ss_pred hhccCChHHHHHHHHHHHHHHHhcccc--chHHHHHHHHHHHHHhcCCcHHH------------------HHH-------
Confidence 455677888888999999999988885 88888888888888765443211 000
Q ss_pred HHHHHHHHHhhc----ChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcC--
Q 003081 339 MWDTLDLCINVV----DTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEK-- 412 (850)
Q Consensus 339 l~eal~~~~~~l----d~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~-- 412 (850)
.-+++-+.+|+ +...+..-+..+....+++....++.-+...+..++...+.-+.-|....+..+...+..++
T Consensus 937 -slalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~ 1015 (2067)
T KOG1822|consen 937 -SLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTS 1015 (2067)
T ss_pred -HHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcc
Confidence 01222233333 23334443445555556653223344455555555556666777888888888888885433
Q ss_pred cHHHHHHHHHH
Q 003081 413 SAAAKRAFASA 423 (850)
Q Consensus 413 n~~Vr~~~a~a 423 (850)
..+|++.+-+.
T Consensus 1016 ~~ev~q~~~R~ 1026 (2067)
T KOG1822|consen 1016 HVEVHQCYNRC 1026 (2067)
T ss_pred hhhhhhhhccc
Confidence 23455444333
No 202
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=84.53 E-value=11 Score=33.24 Aligned_cols=84 Identities=5% Similarity=-0.065 Sum_probs=64.8
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCC
Q 003081 520 IVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAED 599 (850)
Q Consensus 520 Il~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~ 599 (850)
.++.+...+.|+...+|..+...|..++..-. .-....+.++.++.+.+++.+.-.=..++++|++++...+
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p------- 75 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP------- 75 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh-------
Confidence 44556677899999999999999999998654 2223579999999999998887788889999998886433
Q ss_pred CCchHHHHHHHHHHHh
Q 003081 600 PTTPFAIVDMVSSACR 615 (850)
Q Consensus 600 ~~~~~~i~~~l~~e~~ 615 (850)
..+++.++.+-.
T Consensus 76 ----~~vl~~L~~~y~ 87 (92)
T PF10363_consen 76 ----DEVLPILLDEYA 87 (92)
T ss_pred ----HHHHHHHHHHHh
Confidence 456666666644
No 203
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.48 E-value=17 Score=39.17 Aligned_cols=125 Identities=15% Similarity=0.193 Sum_probs=84.1
Q ss_pred hhhhhhhHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhC
Q 003081 88 SLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSG 167 (850)
Q Consensus 88 ~w~sr~gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~ 167 (850)
+|-..--....+....+--.+.+.+.|.+++..+.+-+..|...|-+++|-+...+.+....-+..-++.++..|+..-.
T Consensus 101 dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~ 180 (334)
T KOG2933|consen 101 DWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKAS 180 (334)
T ss_pred HHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 47655444444444444445889999999999999999999999999999888888765444444455555555554444
Q ss_pred CCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHH
Q 003081 168 SRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAG 219 (850)
Q Consensus 168 ~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA 219 (850)
...-=||+.+-.||..++....+..+.++ |. ..+...++.+|.-+
T Consensus 181 ~dnrFvreda~kAL~aMV~~vtp~~~L~~---L~----~~~~~~n~r~r~~a 225 (334)
T KOG2933|consen 181 QDNRFVREDAEKALVAMVNHVTPQKLLRK---LI----PILQHSNPRVRAKA 225 (334)
T ss_pred ccchHHHHHHHHHHHHHHhccChHHHHHH---HH----HHHhhhchhhhhhh
Confidence 44456799999999999987765544332 22 23445556665543
No 204
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=84.18 E-value=15 Score=37.48 Aligned_cols=164 Identities=16% Similarity=0.189 Sum_probs=93.8
Q ss_pred hHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhcCCch-hhH
Q 003081 377 GVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKN-SQI 455 (850)
Q Consensus 377 ~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~~d~~-~r~ 455 (850)
.+.+++..+..+++....|++.++++.+-..- ++++...++++=.++|..++..+++.+-++++--.+. .++.+ .|.
T Consensus 19 ~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr-~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~~-~~~~~~~ra 96 (198)
T PF08161_consen 19 EVLNVLSALFEKLGERSSPLLKPILKTLGDLR-ESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLDN-ADDSQPGRA 96 (198)
T ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHHHH-cCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCccC-CCcCCcccc
Confidence 45677778888888888899999998888776 5666788888889999999999988776554422111 11111 121
Q ss_pred HHHHHHHHHHhh-chhhhhhhHhhHhHHHHHHh---cC---Cch--H---HHHHHHHHHHHhcCCC--hhhHHhhHHHHH
Q 003081 456 SCAILLKSYSSV-ASDVLSGYHAVIVPVIFISR---FE---DDK--Y---VSDLFEELWEENTSGD--RVTLQLYLGEIV 521 (850)
Q Consensus 456 ~~~~~l~al~~~-~~~~f~~~~~~vlP~l~~~~---~d---~~~--~---v~~~~~~v~~~l~~~~--~~~i~~yl~eIl 521 (850)
-++.-+-++ .+..+.-+.+.|+|+.-... .+ ..+ + ......++|+-+.+-+ +..+....+.+-
T Consensus 97 ---WLLPlLr~~i~~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~FC~~P~D~~~~F~~~a 173 (198)
T PF08161_consen 97 ---WLLPLLRDHIRNASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGFCNYPTDLAESFPSFA 173 (198)
T ss_pred ---hhHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHhcCCcccHHHHHHHHH
Confidence 111222111 23455566777888763211 11 111 1 1234456676543311 123333346666
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHH
Q 003081 522 SLICEGIASSSWSSKRKSAKAICKL 546 (850)
Q Consensus 522 ~ll~~~L~d~s~~vr~~aa~alg~l 546 (850)
+.+...+.+. .++|.....+|..+
T Consensus 174 ~~L~~~L~~~-~~LR~~Ic~aL~~L 197 (198)
T PF08161_consen 174 KLLGNALYDQ-PDLRPIICQALRRL 197 (198)
T ss_pred HHHHHHHhcC-cchHHHHHHHHHHH
Confidence 6666666553 45666655555443
No 205
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.03 E-value=1.2e+02 Score=39.13 Aligned_cols=116 Identities=9% Similarity=0.132 Sum_probs=81.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhh------HHHHHHHHHHhc-C-CCChhhHHH-------HHHHHH
Q 003081 521 VSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNY------HHVLLESIMKEV-P-GRLWEGKDA-------LLYAIG 585 (850)
Q Consensus 521 l~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~------l~~llp~L~~~L-~-~r~~~gKe~-------vL~aL~ 585 (850)
+..+.++..|.-.+||..|+.++=.+..+-|..+++. ...++|.|-..- + -+.|+||+- ....++
T Consensus 999 l~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltis 1078 (1610)
T KOG1848|consen 999 LVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTIS 1078 (1610)
T ss_pred HHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHH
Confidence 4455666777778999999999999998888888772 466777776333 2 245998865 445555
Q ss_pred HHHHhccccccc--CCCC---chHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHc
Q 003081 586 SISTSCHKDISA--EDPT---TPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAF 636 (850)
Q Consensus 586 ~l~~~~~~~l~~--~~~~---~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~ 636 (850)
+++.-..+.+.. ..+. .-+.++..+.|.....++++.-+|+.+|..++...
T Consensus 1079 gIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~si 1134 (1610)
T KOG1848|consen 1079 GIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFSI 1134 (1610)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHH
Confidence 555544433321 1122 24566778888888899999999999999987654
No 206
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=83.26 E-value=1.1e+02 Score=36.38 Aligned_cols=253 Identities=8% Similarity=0.079 Sum_probs=126.9
Q ss_pred CCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhh
Q 003081 449 DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGI 528 (850)
Q Consensus 449 ~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L 528 (850)
++...+.-++++|..+.+..| .+....+-.++...-|+|..||..+.+-+-.+|.. -..|++.|.++|.+.|
T Consensus 34 g~~k~K~Laaq~I~kffk~FP----~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~----~~~~v~kvaDvL~QlL 105 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFP----DLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKD----NPEHVSKVADVLVQLL 105 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-G----GGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhhCh----hhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHh----HHHHHhHHHHHHHHHH
Confidence 445556667777777665544 34444555555556677778887766655555554 2468889999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHH
Q 003081 529 ASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVD 608 (850)
Q Consensus 529 ~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~ 608 (850)
.+.+..-....-.+|-.+...-+.. .+..++..+... ...+...||.+++.+..-+...+..+. ..-..+..
T Consensus 106 ~tdd~~E~~~v~~sL~~ll~~d~k~---tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~~----~p~~E~e~ 177 (556)
T PF05918_consen 106 QTDDPVELDAVKNSLMSLLKQDPKG---TLTGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPELL----TPQKEMEE 177 (556)
T ss_dssp T---HHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTTS-------HHHHH
T ss_pred hcccHHHHHHHHHHHHHHHhcCcHH---HHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHHh----hchHHHHH
Confidence 9888776666667776666532111 123333333321 122456899999877655443332221 11145556
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHcCC---c---hhHHhHHHHHHhhcccccccCCCCCCCCCCCcccchhhhcccc
Q 003081 609 MVSSACRKKIKKYREAAFSCLEQVIKAFRD---P---KFFNIIFPLLFEMCGSTALNKSGQVPLPSDASKEESADESVSA 682 (850)
Q Consensus 609 ~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~~---~---~~~~iv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (850)
.++.++++--.++-..=+..+=.++..++. . .-.+.+..++.+..+-+. +.+..+ ..
T Consensus 178 ~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~---------~f~~sD--------~e 240 (556)
T PF05918_consen 178 FIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQ---------PFDPSD--------PE 240 (556)
T ss_dssp HHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS------------SSS--------HH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCC---------CCCCcC--------HH
Confidence 666666654444555556666666666653 1 224445555555443111 111111 22
Q ss_pred cHHHHHHhhhhhccccccccHHHHHHHHHHHHHhhcCCCCCc---hHHHHHHHHHHHH
Q 003081 683 PLDKVLDCVSSCIHVAHVNDIIEQEKNLVQLFTISLSPGFPW---TVKMSAFSSIKEL 737 (850)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~ 737 (850)
.++.++.|+..++......-. ...+.+.|+.+.+|.... ..|+-+++.+-++
T Consensus 241 ~Idrli~C~~~Alp~fs~~v~---Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~ 295 (556)
T PF05918_consen 241 SIDRLISCLRQALPFFSRGVS---SSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAEL 295 (556)
T ss_dssp HHHHHHHHHHHHGGG-BTTB-----HHHHHHHHHHTCCCTT-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHhcCCCC---hHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHH
Confidence 444567777766543222111 112444556666776655 6677666655555
No 207
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.07 E-value=2.4 Score=42.80 Aligned_cols=89 Identities=12% Similarity=0.086 Sum_probs=65.2
Q ss_pred hHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH---hCcch
Q 003081 478 VIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEI---LGESL 554 (850)
Q Consensus 478 ~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~---~g~~l 554 (850)
..+|.++.++.+.+-.-+..+.+-..++.-..+..+-+.+|.++.-+...+...+-++...+.++|..++.. .|..+
T Consensus 114 ~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aL 193 (262)
T KOG3961|consen 114 PYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAAL 193 (262)
T ss_pred HHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhh
Confidence 467887888776444444443333333332223557788999999999999999999999999999999865 45788
Q ss_pred hhhHHHHHHHHH
Q 003081 555 SNYHHVLLESIM 566 (850)
Q Consensus 555 ~~~l~~llp~L~ 566 (850)
.|++.+++|.+-
T Consensus 194 VPfYRQlLp~~n 205 (262)
T KOG3961|consen 194 VPFYRQLLPVLN 205 (262)
T ss_pred hhHHHHhhhhhh
Confidence 999999999874
No 208
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=83.00 E-value=1.2e+02 Score=36.67 Aligned_cols=220 Identities=13% Similarity=0.081 Sum_probs=117.3
Q ss_pred HHHHHHHHHhhcChhhH-hhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHH
Q 003081 339 MWDTLDLCINVVDTESL-DQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAK 417 (850)
Q Consensus 339 l~eal~~~~~~ld~~~l-~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr 417 (850)
.++++.+.++.++..++ .+++|.+++.+.+..-.+. .--+..++ ..+.+-..|..++++.+...+..-.+-.++
T Consensus 293 Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~~~vp~----~LP~v~~i-~~~~s~~~~~~~~~p~l~pi~~~~~~~~~~ 367 (700)
T KOG2137|consen 293 FLKGLSKLIPTFPARVLFQKILPTLVAELVNTKMVPI----VLPLVLLI-AEGLSQNEFGPKMLPALKPIYSASDPKQAL 367 (700)
T ss_pred HHHHHHHhhccCCHHHHHHhhhhHHHHHhcccccccc----ccchhhhh-hhccchhhhhhhhhHHHHHHhccCCcccch
Confidence 35567777777777765 6799999988855322221 11111111 123344557778888888777322233333
Q ss_pred HHHHHHHHHHhhhCCHHHH-HHHHHHHHHhhcC-CchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHH-HhcCCchHH
Q 003081 418 RAFASACASVLKYATPSQA-QKLIEETAALHID-DKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFI-SRFEDDKYV 494 (850)
Q Consensus 418 ~~~a~alg~L~~~~~~~~v-~~li~~l~~~~~~-d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~-~~~d~~~~v 494 (850)
-....-+.-|.+..+++.+ +++++-+..-+.. |-..+..+...+..+++... +......++|-+.. +.+...-.|
T Consensus 368 l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~v 445 (700)
T KOG2137|consen 368 LFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYV 445 (700)
T ss_pred hhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHH
Confidence 3333444555555555544 4455544444432 22335566667777766653 44556677887643 233344455
Q ss_pred HHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh-C-cch-hh-hHHHHHHHHHHh
Q 003081 495 SDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEIL-G-ESL-SN-YHHVLLESIMKE 568 (850)
Q Consensus 495 ~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~-g-~~l-~~-~l~~llp~L~~~ 568 (850)
+-...-.+..++..+.. ...+++++ .+.++....+..+..........++... + ..+ .. .+|.+||.....
T Consensus 446 kvn~L~c~~~l~q~lD~--~~v~d~~l-pi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 446 KVNVLPCLAGLIQRLDK--AAVLDELL-PILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred HHHHHHHHHHHHHHHHH--HHhHHHHH-HHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence 54444444444432211 12234444 4456667777778877777777777442 2 122 22 267777765543
No 209
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.07 E-value=1.4e+02 Score=37.10 Aligned_cols=91 Identities=8% Similarity=-0.063 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH---hCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhccc
Q 003081 517 LGEIVSLICEGIASSSWSSKRKSAKAICKLGEI---LGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHK 593 (850)
Q Consensus 517 l~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~---~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~ 593 (850)
+..|+.-....|++++-.+|-.+..++...... ..+.+.|...+.||.+++.+..+++-.-+.+++.+-.++..+++
T Consensus 801 v~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgD 880 (1014)
T KOG4524|consen 801 VLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGD 880 (1014)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhh
Confidence 345666666778999988988888777655533 34567788899999999999998888889999999999998887
Q ss_pred ccccCCCCchHHHHHHH
Q 003081 594 DISAEDPTTPFAIVDMV 610 (850)
Q Consensus 594 ~l~~~~~~~~~~i~~~l 610 (850)
.+.. .+...++|-+
T Consensus 881 Fv~s---R~l~dvlP~l 894 (1014)
T KOG4524|consen 881 FVAS---RFLEDVLPWL 894 (1014)
T ss_pred HHHH---HHHHHHHHHH
Confidence 7643 2444444433
No 210
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=81.55 E-value=12 Score=39.74 Aligned_cols=113 Identities=15% Similarity=0.237 Sum_probs=76.6
Q ss_pred hHHHHHHHhhhcCCc-------hHHHHHHHHhccc-hhh--hhhhhHH--hhHHHHHHHhhhhhchhhhhHHHHHHhhcC
Q 003081 59 TYKELCNLANEMGQP-------DLIYKFMDLANYQ-VSL--NSKRGAA--FGFSKIAKQAGDALKPHLRLLIPKLVRFQY 126 (850)
Q Consensus 59 tyk~l~~lA~~~g~p-------~lv~~fm~la~~~-~~w--~sr~gAa--~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~ 126 (850)
+|..+|.--..-++| ..+...+....+. ..- ..||+|- |.+.+|+......-.+.++..+..|++.-.
T Consensus 120 ~f~~lc~~l~~~~~~~l~~LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~ 199 (255)
T PF10350_consen 120 GFTALCRRLWSSNNPELSELPEEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAK 199 (255)
T ss_pred HHHHHHHHHhcCCCchHHHhHHHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhc
Confidence 344445444433344 3466666666554 322 5788665 667788765432222788899999999888
Q ss_pred CCCHh--------HHHHHHHHHHHhccCCh--HHHHHHHHHHHHHHHHhhCCCCh
Q 003081 127 DPDKN--------VQDAMAHIWKSLVADPK--RTIDEHLDLIFDDLLIQSGSRLW 171 (850)
Q Consensus 127 Dp~~~--------VR~a~~~iw~~Lv~d~~--~~i~~~~~~Il~~Ll~~l~~~~w 171 (850)
.|... -|=-+.+|.++++.|.+ ..+..|+...+.--+.++.++.|
T Consensus 200 ~~~~~~~~~~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~~~l~lai~~f~s~~W 254 (255)
T PF10350_consen 200 SPSTQHEDEKSDLPQVHALNILRAIFRDSKLSEDVSPYIEDALILAIKGFSSPDW 254 (255)
T ss_pred CCcccccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 87663 34446889999998864 45677888888888999999999
No 211
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=81.55 E-value=9.6 Score=33.68 Aligned_cols=72 Identities=14% Similarity=0.030 Sum_probs=58.8
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCC
Q 003081 117 LIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRK 189 (850)
Q Consensus 117 lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~ 189 (850)
.+...+.+..||.+-||--.......|+.... ....+.+.++.-++..+.|++.=|=-+|+.+++.|....+
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 35566677899999999999988888886543 2344578999999999999999999999999999887554
No 212
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=81.25 E-value=15 Score=36.18 Aligned_cols=125 Identities=15% Similarity=0.253 Sum_probs=73.3
Q ss_pred chHHHHHHHhhhcCCchHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhc------hhh----hhHHHHHHhhcCC
Q 003081 58 STYKELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALK------PHL----RLLIPKLVRFQYD 127 (850)
Q Consensus 58 styk~l~~lA~~~g~p~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~------p~L----~~lvp~L~r~~~D 127 (850)
.-+++||+|+...++++--+.+++ + ...+|.=+.--+..+++..|..+. +.+ .++.|.|++....
T Consensus 10 ~vf~~Lc~L~~~~~~~~~~~~~~~---~--~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~ 84 (168)
T PF12783_consen 10 LVFRDLCSLSSKPSDPGNSPDFLS---H--DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSS 84 (168)
T ss_pred HHHHHHHHHhCCCCCCCCCcchhh---h--hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhh
Confidence 346788988865555533333332 1 122333233333666777766655 121 3788888888887
Q ss_pred CCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh-hCCC--ChhHHHHHHHHHHHHHcc
Q 003081 128 PDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQ-SGSR--LWRSREASCLSLADIIQG 187 (850)
Q Consensus 128 p~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~-l~~~--~wRVReaa~~Al~~Ll~~ 187 (850)
+++.|=..+.+|...+.......+....+.++..++.. +.++ .+..|+.+..++..+.+.
T Consensus 85 ~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 85 SDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 77887777777777666444333444445555555542 2222 344899999999998863
No 213
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.29 E-value=1.3e+02 Score=35.29 Aligned_cols=153 Identities=12% Similarity=0.208 Sum_probs=98.2
Q ss_pred chHHHHHHHHHHHHhcCC--------ChhhHHhhHHHHHHHHHHhhcCCC------------HHHHHHHHHHHHHHHHHh
Q 003081 491 DKYVSDLFEELWEENTSG--------DRVTLQLYLGEIVSLICEGIASSS------------WSSKRKSAKAICKLGEIL 550 (850)
Q Consensus 491 ~~~v~~~~~~v~~~l~~~--------~~~~i~~yl~eIl~ll~~~L~d~s------------~~vr~~aa~alg~la~~~ 550 (850)
+-+|.++....|-.+... ..+..++|...+++.+...++-+. ...|......+.|++..+
T Consensus 304 ~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~ii 383 (559)
T KOG2081|consen 304 DTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFII 383 (559)
T ss_pred chhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHh
Confidence 335666655666443321 112347888888888877654322 356777778888888877
Q ss_pred CcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 003081 551 GESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLE 630 (850)
Q Consensus 551 g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg 630 (850)
|+. .-+.++.-.+.+ +..+|+.-|++|-.+..++.+.. .+..+.++.|++.+..-.. ...+|..++..+|
T Consensus 384 gs~--e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~----~~e~~i~pevl~~i~nlp~--Q~~~~~ts~ll~g 453 (559)
T KOG2081|consen 384 GSD--ECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVS----PEENTIMPEVLKLICNLPE--QAPLRYTSILLLG 453 (559)
T ss_pred CcH--HHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCC----ccccchHHHHHHHHhCCcc--chhHHHHHHHHHH
Confidence 763 112222222222 44579999999998888876543 2334567777777765432 2349999999999
Q ss_pred HHHHHcC-CchhHHhHHHHHHhhc
Q 003081 631 QVIKAFR-DPKFFNIIFPLLFEMC 653 (850)
Q Consensus 631 ~l~~~~~-~~~~~~iv~~~l~~~~ 653 (850)
++.+.+. ..+..+.+..++....
T Consensus 454 ~~~ew~~~~p~~le~v~~~~~~~~ 477 (559)
T KOG2081|consen 454 EYSEWVEQHPELLEPVLRYIRQGL 477 (559)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHh
Confidence 9999885 4567777777776644
No 214
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=79.87 E-value=87 Score=33.20 Aligned_cols=58 Identities=17% Similarity=0.255 Sum_probs=37.3
Q ss_pred hcCCchHHHHHHHHh-ccchhhhhhhhHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHH
Q 003081 69 EMGQPDLIYKFMDLA-NYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAM 136 (850)
Q Consensus 69 ~~g~p~lv~~fm~la-~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~ 136 (850)
.+++.+-++.+..-. ..+...--|.-|+++||++.... .++.|-+|..||...||.+.
T Consensus 62 Q~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~~~~----------~~~~l~k~~~dp~~~v~ETc 120 (289)
T KOG0567|consen 62 QMQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGDPE----------SLEILTKYIKDPCKEVRETC 120 (289)
T ss_pred hhccchhhHHHHHHhcccccchHHHHHHHHHHHhhcchh----------hHHHHHHHhcCCccccchHH
Confidence 344455566555533 22333556778999998876221 45666666799999999973
No 215
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=79.24 E-value=84 Score=35.95 Aligned_cols=91 Identities=12% Similarity=0.144 Sum_probs=54.9
Q ss_pred HHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccC
Q 003081 181 LADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGI 260 (850)
Q Consensus 181 l~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL 260 (850)
+.++++..+.+++.+....++..+-++++..+-.|-+.|...+..- ..+..... ....+++.+.|.|....-
T Consensus 279 l~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~--~~~~li~~------~~~~i~p~i~~~L~~~~~ 350 (409)
T PF01603_consen 279 LEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNE--YFLSLISQ------NSRVILPIIFPALYRNSK 350 (409)
T ss_dssp HHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSH--HHHHHHHC------THHHHHHHHHHHHSSTTS
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCH--HHHHHHHh------ChHHHHHHHHHHHHHHHH
Confidence 5566667777788888888999999999998888877765444321 01112221 133466777777652111
Q ss_pred CCchhHHHHHHHHHHHHHH
Q 003081 261 LSKVDSISKASIGVVMKLV 279 (850)
Q Consensus 261 ~s~~~evr~~a~~~L~~la 279 (850)
..=+..||..+..++.-+.
T Consensus 351 ~HWn~~Vr~~a~~vl~~l~ 369 (409)
T PF01603_consen 351 NHWNQTVRNLAQNVLKILM 369 (409)
T ss_dssp S-SSTTHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHH
Confidence 1224678888887776553
No 216
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=79.06 E-value=39 Score=39.99 Aligned_cols=103 Identities=17% Similarity=0.083 Sum_probs=75.9
Q ss_pred hcCCCCHhHHHHHHHHHHHhccCChHHHHHHH-HHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHH
Q 003081 124 FQYDPDKNVQDAMAHIWKSLVADPKRTIDEHL-DLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWT 202 (850)
Q Consensus 124 ~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~-~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~ 202 (850)
...||..+|..++..+..-+|-+...--+.++ ...++.+.+.++++..-+|..+.+++-+++-+..-+.....+..+..
T Consensus 427 ll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a 506 (678)
T KOG1293|consen 427 LLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPA 506 (678)
T ss_pred HhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhH
Confidence 33999999999986655556644433233333 34778888899999999999999999999988765555555566555
Q ss_pred HHH-HHhccCcHHHHHHHHHHHHHH
Q 003081 203 AAF-RAMDDIKETVRTAGDKLCRSV 226 (850)
Q Consensus 203 ~l~-~~ldD~k~~VR~aA~~~~~~L 226 (850)
..+ ....|....|.+.+..+++.+
T Consensus 507 ~~i~~l~nd~d~~Vqeq~fqllRNl 531 (678)
T KOG1293|consen 507 NLILDLINDPDWAVQEQCFQLLRNL 531 (678)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 433 345799999999998887776
No 217
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=79.05 E-value=6.2 Score=40.41 Aligned_cols=78 Identities=14% Similarity=0.129 Sum_probs=58.4
Q ss_pred hhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhh
Q 003081 115 RLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVG 194 (850)
Q Consensus 115 ~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~ 194 (850)
+.+.|.+..+..++|+-+||+..-.+-..+ ...+++.++..+-..+.|+++.||.|..++|.++... .++.+.
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~------~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~-~~~~v~ 191 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYI------RKEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK-DPDEVL 191 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHG------GGCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT--HHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHH------HhcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh-CHHHHH
Confidence 457888899999999999999865332222 2267888999888999999999999999999998544 345555
Q ss_pred HHHHH
Q 003081 195 KHLRR 199 (850)
Q Consensus 195 ~~L~~ 199 (850)
+++.+
T Consensus 192 ~~l~~ 196 (213)
T PF08713_consen 192 EFLQK 196 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55555
No 218
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=78.83 E-value=1.3e+02 Score=34.79 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCC
Q 003081 397 TSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYAT 432 (850)
Q Consensus 397 ~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~ 432 (850)
+..+++.|+..++.+.|...++.+|.++.+++..+.
T Consensus 310 LnPiIrpLMdSIK~Een~~LQ~rsA~slA~Li~~~~ 345 (441)
T PF12054_consen 310 LNPIIRPLMDSIKREENELLQQRSAESLARLIQLCV 345 (441)
T ss_pred ccHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHh
Confidence 456677777777778899999999999999887544
No 219
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=78.74 E-value=29 Score=34.93 Aligned_cols=75 Identities=13% Similarity=0.133 Sum_probs=57.8
Q ss_pred HHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHH
Q 003081 119 PKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLR 198 (850)
Q Consensus 119 p~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~ 198 (850)
+.+..+..|+++-+||+..-++-....+ +.+.+.+++.+...+.|++..||.|..++|.++... .++.+.+++.
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~-~~~~v~~~l~ 181 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK-DPERVIAFLE 181 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh-CHHHHHHHHH
Confidence 7888889999999999997666444321 346788888888889999999999999999998655 3344555554
Q ss_pred H
Q 003081 199 R 199 (850)
Q Consensus 199 ~ 199 (850)
+
T Consensus 182 ~ 182 (197)
T cd06561 182 K 182 (197)
T ss_pred H
Confidence 4
No 220
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=78.74 E-value=25 Score=43.70 Aligned_cols=129 Identities=18% Similarity=0.172 Sum_probs=80.1
Q ss_pred hhhhHHhhHHHHHHHhh----hhhchhhhhHHHHHHhhcCC-CCHhHHHHHHHHHHHhccCChHHH-HHHHHHHHHHHHH
Q 003081 91 SKRGAAFGFSKIAKQAG----DALKPHLRLLIPKLVRFQYD-PDKNVQDAMAHIWKSLVADPKRTI-DEHLDLIFDDLLI 164 (850)
Q Consensus 91 sr~gAa~gl~~I~~~~~----~~l~p~L~~lvp~L~r~~~D-p~~~VR~a~~~iw~~Lv~d~~~~i-~~~~~~Il~~Ll~ 164 (850)
.|--|||-|+.|+.+.. .-+++ .++..-+-.+.| |.|-.|+=.+=+.+.|-.|..... ..--+.--+-|..
T Consensus 573 qrtmaAFVLAviv~nf~lGQ~acl~~---~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~ 649 (1387)
T KOG1517|consen 573 QRTMAAFVLAVIVRNFKLGQKACLNG---NLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLIL 649 (1387)
T ss_pred HHHHHHHHHHHHHcccchhHHHhccc---cHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHH
Confidence 45577899999998652 22333 344444445678 589999998888888777653211 0001222334556
Q ss_pred hhCCCChhHHHHHHHHHHHHHccCC--ch-h----------------hhHHHHHHHHHHHHHhccCcHHHHHHHHHH
Q 003081 165 QSGSRLWRSREASCLSLADIIQGRK--FD-Q----------------VGKHLRRIWTAAFRAMDDIKETVRTAGDKL 222 (850)
Q Consensus 165 ~l~~~~wRVReaa~~Al~~Ll~~~~--~~-~----------------l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~ 222 (850)
.+.|+..+||.||..|||.++.+.. ++ + .+.+..+-...++.+..|..+-||.+..-+
T Consensus 650 ~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ 726 (1387)
T KOG1517|consen 650 LLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVA 726 (1387)
T ss_pred HhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHH
Confidence 6788999999999999999998531 11 1 112222222256666788888898875433
No 221
>KOG1810 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=78.41 E-value=1.1e+02 Score=39.03 Aligned_cols=221 Identities=13% Similarity=0.170 Sum_probs=128.2
Q ss_pred CccchHHHHHHHhhh--cCCc----hHHHHHHHHhccchhhhhhhhH--HhhHHHHHHH-hhhhhchhhhhHHHHHHhhc
Q 003081 55 GKLSTYKELCNLANE--MGQP----DLIYKFMDLANYQVSLNSKRGA--AFGFSKIAKQ-AGDALKPHLRLLIPKLVRFQ 125 (850)
Q Consensus 55 ~~~styk~l~~lA~~--~g~p----~lv~~fm~la~~~~~w~sr~gA--a~gl~~I~~~-~~~~l~p~L~~lvp~L~r~~ 125 (850)
+...+++.+|++-.. ..-| +.+-+.|........|-.||.| =|.+-+|.+. ....+++.+++-+-+|+...
T Consensus 709 ~~~~gf~~lC~f~~s~~~~~~~lp~~wLee~l~~i~~kt~~itRRSaGlP~ll~al~~te~~~~~k~ll~r~~~~Ll~ia 788 (1417)
T KOG1810|consen 709 SARPGFTALCSFLQSNESRFPELPELWLEELLEKILAKTSGITRRSAGLPFLLTALVETELKLGMKELLPRCFCKLLKIA 788 (1417)
T ss_pred hccccHHHHHHHHHhcccccccCcHHHHHHHHHHHHhhcccchhccCCCCHHHHHHHHhhhcccchhhhHHHHHHHHHHh
Confidence 345667788864332 2222 5688888877666678889944 3677666643 33445666776777777666
Q ss_pred CCCCHhHHHH-------HHHHHHHhccCCh--HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHc---cC-----
Q 003081 126 YDPDKNVQDA-------MAHIWKSLVADPK--RTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQ---GR----- 188 (850)
Q Consensus 126 ~Dp~~~VR~a-------~~~iw~~Lv~d~~--~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~---~~----- 188 (850)
.-|.|.++.. +-++.+++..++. ....+++..=|.--+.++.+..|-.|.+|...++.|+. |.
T Consensus 789 ~~p~~~~~~~~~~p~VHA~NvmkaIf~~~~LS~~~sef~s~Al~lAi~~fs~~~W~~RN~atlLfaALi~RvfGv~~s~~ 868 (1417)
T KOG1810|consen 789 ECPLPGEWGEGDEPRVHAMNVMKAIFTSSILSNERSEFQSRALRLAIEGFSHDMWAERNSATLLFAALINRVFGVIRSRL 868 (1417)
T ss_pred cCCCccccCCCcchhhhhHHHHHHHHccchhhHHHHHHHHHHHHHHHHhcCchHHhhhhhHHHHHHHHHHHHHHhhhHHh
Confidence 6666664433 3455666665542 23455677777777888999889999999999988875 20
Q ss_pred ------C--chhhhHHHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHh
Q 003081 189 ------K--FDQVGKHLRRIWTAAFRAMD----DIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLL 256 (850)
Q Consensus 189 ------~--~~~l~~~L~~i~~~l~~~ld----D~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll 256 (850)
. .-.+-..++.+-+-+++-++ +...+-+.. -.++.+--++.|.-.+.. ..+..-+....|+++
T Consensus 869 ~~~~r~~~S~~~FFtkyp~L~~~ll~~Less~a~~sgs~q~s--~aL~piLl~LSrL~~~~~---~~~~~~ls~F~p~l~ 943 (1417)
T KOG1810|consen 869 CLDHRNRLSGLEFFTKYPTLHPLLLTELESSDAQLSGSEQSS--LALWPILLMLSRLYPSAP---RSATLGLSVFVPFLQ 943 (1417)
T ss_pred hcccccccchhhhhhcCccHHHHHHHHhhhhccCCCcccCcc--ccHHHHHHHHHhhcccCC---ccccCCchhhhHHHH
Confidence 0 01122334555555554443 111111111 113333333333322111 111223556788877
Q ss_pred hccCCCchhHHHHHHHHHHHHHHHh
Q 003081 257 AEGILSKVDSISKASIGVVMKLVKG 281 (850)
Q Consensus 257 ~~gL~s~~~evr~~a~~~L~~la~~ 281 (850)
. ...+++..+|..|..++..++..
T Consensus 944 e-ct~q~~~~vRemAs~vl~~L~~~ 967 (1417)
T KOG1810|consen 944 E-CTCQSNLKVREMASLVLLALVDA 967 (1417)
T ss_pred H-HHhhhhHHHHHHHHHHHHHHHHH
Confidence 4 33445588999998888888765
No 222
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=78.35 E-value=1.8e+02 Score=36.00 Aligned_cols=97 Identities=14% Similarity=0.204 Sum_probs=55.2
Q ss_pred hhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCC----hHHHHHHHHHHHHHHHHhhCCCChhH--HHHHHHHHHHHHccC
Q 003081 115 RLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADP----KRTIDEHLDLIFDDLLIQSGSRLWRS--REASCLSLADIIQGR 188 (850)
Q Consensus 115 ~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~----~~~i~~~~~~Il~~Ll~~l~~~~wRV--Reaa~~Al~~Ll~~~ 188 (850)
..++|.++.+.+|++|.+|+=+...|+.+-..+ ...++..+...+...+..++.+.|-. -..-=.++.-+++..
T Consensus 119 ~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~l~~i~~~~~~~~~~~~fW~g~~~Il~~l 198 (727)
T PF12726_consen 119 KELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSHLYRISPNNYNPDSVIRFWSGFSLILRLL 198 (727)
T ss_pred ccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHc
Confidence 678999999999999999999999999997653 22222222222222222232222221 111223455666666
Q ss_pred CchhhhHHHHH-----HHHHHHHHhccC
Q 003081 189 KFDQVGKHLRR-----IWTAAFRAMDDI 211 (850)
Q Consensus 189 ~~~~l~~~L~~-----i~~~l~~~ldD~ 211 (850)
+.+.+..++.. |+..++.-+.+.
T Consensus 199 d~~~i~~~l~~~~~~~i~~L~~~hL~~~ 226 (727)
T PF12726_consen 199 DKEQITHSLRALELDPIYRLLLNHLSSN 226 (727)
T ss_pred cHHHHHHHHhccccchHHHHHHHHhhcc
Confidence 66666666666 344444444433
No 223
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=76.71 E-value=49 Score=35.85 Aligned_cols=163 Identities=12% Similarity=0.173 Sum_probs=103.0
Q ss_pred HHHHHhhhcCCchHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhh---hhhchhh---hhHHHHHHhhcCCCCHhHHHH
Q 003081 62 ELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAG---DALKPHL---RLLIPKLVRFQYDPDKNVQDA 135 (850)
Q Consensus 62 ~l~~lA~~~g~p~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~---~~l~p~L---~~lvp~L~r~~~Dp~~~VR~a 135 (850)
...-|++++-+.++.+.++.....- .|++|+-+++-++.+...-- .....|+ +++++.|..++++ .+.+--.
T Consensus 67 ~~~qLtqef~~~~~l~~lI~~l~~l-~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~ 144 (342)
T KOG1566|consen 67 AVAQLTQEFYNADVLSLLIQHLPKL-EFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALT 144 (342)
T ss_pred HHHHHHHHHHhCCchHHHHHhhhcc-cchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHH
Confidence 5677888888888887777666555 48899999988888876431 1122233 3778888888666 5544433
Q ss_pred HHHH-----------------------------------------HHHhccCChHHH----HHHHHHHHHHHHHh-hCCC
Q 003081 136 MAHI-----------------------------------------WKSLVADPKRTI----DEHLDLIFDDLLIQ-SGSR 169 (850)
Q Consensus 136 ~~~i-----------------------------------------w~~Lv~d~~~~i----~~~~~~Il~~Ll~~-l~~~ 169 (850)
.... ++.+.+.-+.++ ..|++.++++.-+. +.+.
T Consensus 145 cg~mlrEcirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~ 224 (342)
T KOG1566|consen 145 CGNMLRECIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE 224 (342)
T ss_pred HHHHHHHHHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc
Confidence 2222 222222111122 22345555664333 4567
Q ss_pred ChhHHHHHHHHHHHHHccCCch-hhhHHHH--HHHHHHHHHhccCcHHHHHHHHHHHHHH
Q 003081 170 LWRSREASCLSLADIIQGRKFD-QVGKHLR--RIWTAAFRAMDDIKETVRTAGDKLCRSV 226 (850)
Q Consensus 170 ~wRVReaa~~Al~~Ll~~~~~~-~l~~~L~--~i~~~l~~~ldD~k~~VR~aA~~~~~~L 226 (850)
++-.|.-+..++|+++.+++-. .+..|.. +-+..+..+|.|.....+-.|....|..
T Consensus 225 Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvf 284 (342)
T KOG1566|consen 225 NYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVF 284 (342)
T ss_pred ceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHH
Confidence 7888888999999999987644 4556655 5556666777888777777777666654
No 224
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=76.34 E-value=1.7e+02 Score=34.53 Aligned_cols=109 Identities=13% Similarity=0.067 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhhhhcC--cHHHHHHHHHHH---HHHhhhCCHHHHHHHHHHHHHhh----c---------CCchhhHHHH
Q 003081 397 TSMLLRLLFPVVKEEK--SAAAKRAFASAC---ASVLKYATPSQAQKLIEETAALH----I---------DDKNSQISCA 458 (850)
Q Consensus 397 ~~~lL~~Ll~~l~~D~--n~~Vr~~~a~al---g~L~~~~~~~~v~~li~~l~~~~----~---------~d~~~r~~~~ 458 (850)
.+.+++.+..++ ... +.-+|.....-+ ...++.+++..+..+-+.+.... . ++...|..+=
T Consensus 317 ~~~~~~i~~~~l-~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aY 395 (501)
T PF13001_consen 317 FPNILQIVFDGL-YSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAY 395 (501)
T ss_pred CccHHHHHhccc-cCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHH
Confidence 356778888888 445 455555555556 77777888777776666655422 1 1223477778
Q ss_pred HHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcC
Q 003081 459 ILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTS 507 (850)
Q Consensus 459 ~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~ 507 (850)
.+++.|++..+..|..-.. ++..+|....++.++++....+.+..+.+
T Consensus 396 e~lG~L~~~~p~l~~~d~~-li~~LF~sL~~~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 396 ETLGLLAKRAPSLFSKDLS-LIEFLFDSLEDESPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHHHHHccCcccccccHH-HHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence 8999999998887744333 66677877777778888887777766554
No 225
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=76.24 E-value=76 Score=39.75 Aligned_cols=96 Identities=16% Similarity=0.053 Sum_probs=66.3
Q ss_pred HHHH-HHHHHHhccCChHHHHHHH-HHHHHHHHHhhCC-CChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhc
Q 003081 133 QDAM-AHIWKSLVADPKRTIDEHL-DLIFDDLLIQSGS-RLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMD 209 (850)
Q Consensus 133 R~a~-~~iw~~Lv~d~~~~i~~~~-~~Il~~Ll~~l~~-~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ld 209 (850)
+++| .-|...++.+.+.-....+ ..+|.-.+..++| ++|=.|+=.|..||.|-+....-.....-.....++...+.
T Consensus 573 qrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~Ls 652 (1387)
T KOG1517|consen 573 QRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLS 652 (1387)
T ss_pred HHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhc
Confidence 3444 4466666666554444444 3466777778887 47999999999999998755444433333344556777788
Q ss_pred cCcHHHHHHHHHHHHHHHH
Q 003081 210 DIKETVRTAGDKLCRSVTS 228 (850)
Q Consensus 210 D~k~~VR~aA~~~~~~L~~ 228 (850)
|.-+.||.||.-++.++..
T Consensus 653 D~vpEVRaAAVFALgtfl~ 671 (1387)
T KOG1517|consen 653 DPVPEVRAAAVFALGTFLS 671 (1387)
T ss_pred CccHHHHHHHHHHHHHHhc
Confidence 9999999999887777644
No 226
>PF05536 Neurochondrin: Neurochondrin
Probab=76.03 E-value=1.8e+02 Score=34.68 Aligned_cols=186 Identities=10% Similarity=0.032 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCCCH-HHHHHHHHHHHHHHHHhCcchhhh-HHHHHHHHHHhcC
Q 003081 493 YVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSW-SSKRKSAKAICKLGEILGESLSNY-HHVLLESIMKEVP 570 (850)
Q Consensus 493 ~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~-~vr~~aa~alg~la~~~g~~l~~~-l~~llp~L~~~L~ 570 (850)
.-+.+...++..++....-.-.+-+-.-+|.+.+.+.+.+. .+-.-+..+|..++. .+..-... -...+|.|.+.+.
T Consensus 72 ~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~ 150 (543)
T PF05536_consen 72 EYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIP 150 (543)
T ss_pred HHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHH
Confidence 35666667777666532111123344556677777666554 777778888888883 32222111 1223444444443
Q ss_pred CCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCC--------chhH
Q 003081 571 GRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRD--------PKFF 642 (850)
Q Consensus 571 ~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~~--------~~~~ 642 (850)
. ...+++..+..+..++...+...+.++...+..+++.+.+........-+-..+..|+.++...+. ....
T Consensus 151 ~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~ 229 (543)
T PF05536_consen 151 N-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWL 229 (543)
T ss_pred h-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhH
Confidence 3 345689999999998887664445445556777888888888776667788888889998887731 1233
Q ss_pred HhHHHHHHhhcccccccCCCCCCCCCCCcccchhhhcccccHHHHHHhhhhhccccc
Q 003081 643 NIIFPLLFEMCGSTALNKSGQVPLPSDASKEESADESVSAPLDKVLDCVSSCIHVAH 699 (850)
Q Consensus 643 ~iv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (850)
.-+...+..+... .-+.. .|...+. +..++....|..|
T Consensus 230 ~~l~~gl~~iL~s------------r~~~~------~R~~al~-Laa~Ll~~~G~~w 267 (543)
T PF05536_consen 230 SDLRKGLRDILQS------------RLTPS------QRDPALN-LAASLLDLLGPEW 267 (543)
T ss_pred HHHHHHHHHHHhc------------CCCHH------HHHHHHH-HHHHHHHHhChHh
Confidence 3444555555430 11111 3444444 5567777778777
No 227
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.72 E-value=2.6e+02 Score=36.44 Aligned_cols=281 Identities=11% Similarity=0.040 Sum_probs=143.2
Q ss_pred HHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhh
Q 003081 247 SMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKL 326 (850)
Q Consensus 247 ~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~i 326 (850)
....++|.+.-.-..+.--|+|..+++++..|..++|..+-.-.+.++..+-........-. .++.+-..
T Consensus 838 s~~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~eke----------k~ivrlgf 907 (1610)
T KOG1848|consen 838 SLGMLLPSLEVSDNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKE----------KKIVRLGF 907 (1610)
T ss_pred hhHHHHHHHHHHHhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhh----------hhHHHhhh
Confidence 34445555432222345568899999999999999997655445555544442222110000 00011112
Q ss_pred HHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHH---HH----hccccc-----
Q 003081 327 ENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLV---QK----IGMDIK----- 394 (850)
Q Consensus 327 d~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~---~~----~~~~~~----- 394 (850)
+..|+ ...++++.++.+++..++..+....+...+.+.-..|...++.+. .+ .+.+..
T Consensus 908 ~~lrl----------IssDfLqSLp~sci~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~ 977 (1610)
T KOG1848|consen 908 SCLRL----------ISSDFLQSLPTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSV 977 (1610)
T ss_pred hhhhh----------hhhcchhcCChHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcch
Confidence 22222 123456666777777777777766655445554444555444432 21 111111
Q ss_pred -------chH----H----HHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCC----H----HHHHHHHHHHHHh-----
Q 003081 395 -------PYT----S----MLLRLLFPVVKEEKSAAAKRAFASACASVLKYAT----P----SQAQKLIEETAAL----- 446 (850)
Q Consensus 395 -------py~----~----~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~----~----~~v~~li~~l~~~----- 446 (850)
|+- + -++..+...+ +|.-++||+.+++.+=+++..-+ . .-.-.++.++.+.
T Consensus 978 e~~~ss~~~~~~l~e~lwi~ll~~L~~~~-~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~ 1056 (1610)
T KOG1848|consen 978 EDLYSSMKSKEILPEVLWIMLLVHLADLC-EDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQN 1056 (1610)
T ss_pred hhhcccccchhhhhhHHHHHHHHHHHHHh-ccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccc
Confidence 110 1 2344444454 67889999999988766554211 1 2234455555441
Q ss_pred ---hcC--C-chhhHHHHHHHHHHHhhchhhhhhh---------HhhHhHHHHHHhcCCchHHHHHHHHHHH----HhcC
Q 003081 447 ---HID--D-KNSQISCAILLKSYSSVASDVLSGY---------HAVIVPVIFISRFEDDKYVSDLFEELWE----ENTS 507 (850)
Q Consensus 447 ---~~~--d-~~~r~~~~~~l~al~~~~~~~f~~~---------~~~vlP~l~~~~~d~~~~v~~~~~~v~~----~l~~ 507 (850)
+.+ + +++-..++.++++|++..++.|+.+ ...++.++-....+..+++.-.....++ +++.
T Consensus 1057 ~~ewngkeiqkqwtet~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~sii~ 1136 (1610)
T KOG1848|consen 1057 VSEWNGKEIQKQWTETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFSIIE 1136 (1610)
T ss_pred hhhhcchhHhhhhhhhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHHhh
Confidence 111 1 2345678899999998887776532 2334444434445666665544333333 3332
Q ss_pred C--ChhhHHhhHHHHHHHHHHh---hcC----CCHHHHHHHHHHHHHHHH
Q 003081 508 G--DRVTLQLYLGEIVSLICEG---IAS----SSWSSKRKSAKAICKLGE 548 (850)
Q Consensus 508 ~--~~~~i~~yl~eIl~ll~~~---L~d----~s~~vr~~aa~alg~la~ 548 (850)
. ....+..|+..++...... +.+ ..|++.+-....++..+.
T Consensus 1137 ~~~ln~~~~~k~n~vf~~y~~~~~~~ssas~~t~~kv~~eiltgl~~~vq 1186 (1610)
T KOG1848|consen 1137 FGKLNATFTLKINLVFINYGRFCEVSSSASERTLAKVSQEILTGLIESVQ 1186 (1610)
T ss_pred hccccchHHHHhhhhhhhHhhhcccccccchhHHHHHHHHHHhhhHHHHH
Confidence 1 2234445655554433222 222 346677766666665554
No 228
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=74.96 E-value=4.6 Score=30.03 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=26.6
Q ss_pred hHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHH
Q 003081 98 GFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHI 139 (850)
Q Consensus 98 gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~i 139 (850)
+++.|.+.-..-+. -+.+...+.+.+.|+.|.||+++.+.
T Consensus 2 ~l~~iv~~dp~ll~--~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 2 ALSSIVEKDPTLLD--SSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred hHHHHHhcCccccc--hHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 34455544333332 13577788888999999999998763
No 229
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=74.88 E-value=1.1e+02 Score=32.04 Aligned_cols=94 Identities=11% Similarity=0.044 Sum_probs=66.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhc-CCCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHH
Q 003081 530 SSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEV-PGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVD 608 (850)
Q Consensus 530 d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L-~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~ 608 (850)
+..|+..-..+.++.++|...++ +-..+++.+.+.+ +......+.-.++++..++... .+ + .....+
T Consensus 95 ~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~--vv-----d-~~s~w~ 162 (234)
T PF12530_consen 95 DEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE--VV-----D-FYSAWK 162 (234)
T ss_pred cchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh--hc-----c-HHHHHH
Confidence 45789999989999999998766 4566777777777 5556677888899999988421 11 1 233445
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHcCC
Q 003081 609 MVSSACRKKIKKYREAAFSCLEQVIKAFRD 638 (850)
Q Consensus 609 ~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~~ 638 (850)
++.+.+ ...+|+.-++.|..++.-++.
T Consensus 163 vl~~~l---~~~~rp~v~~~l~~l~~l~~~ 189 (234)
T PF12530_consen 163 VLQKKL---SLDYRPLVLKSLCSLFALVPQ 189 (234)
T ss_pred HHHHhc---CCccchHHHHHHHHHHHHhcc
Confidence 666655 456788888888887776653
No 230
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=74.72 E-value=5.8 Score=28.96 Aligned_cols=28 Identities=14% Similarity=0.023 Sum_probs=25.3
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHH
Q 003081 158 IFDDLLIQSGSRLWRSREASCLSLADII 185 (850)
Q Consensus 158 Il~~Ll~~l~~~~wRVReaa~~Al~~Ll 185 (850)
.++.|...+.+.+..+|+.+++||++|.
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 6788888888999999999999999985
No 231
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=73.71 E-value=83 Score=41.80 Aligned_cols=166 Identities=11% Similarity=0.055 Sum_probs=92.9
Q ss_pred HHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhh-cCCchhhHHHHH
Q 003081 381 FISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALH-IDDKNSQISCAI 459 (850)
Q Consensus 381 ~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~-~~d~~~r~~~~~ 459 (850)
.+......++.-+++|.+.++...-..+ ...++.|+.-.+....++......-..++++..++... ++.+..-.++..
T Consensus 417 ll~~~f~~~~~vL~~~f~siL~la~~Ll-~S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~sg~~~ev~~aL~ 495 (1426)
T PF14631_consen 417 LLDQTFKGHSEVLKDYFPSILSLAQSLL-RSKEPSVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIGSGNSQEVDAALD 495 (1426)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHH-TSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 3444445566778899999998888888 56788888777666667776664423344555554443 233333456778
Q ss_pred HHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCCCHHHHHHH
Q 003081 460 LLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKS 539 (850)
Q Consensus 460 ~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~a 539 (850)
++..++...++.+.+|...+.+++-..-.-..+.+|.+|. ++..++-+-...-....+++.-++.+.+.+++...|+.+
T Consensus 496 vL~~L~~~~~~~l~~fa~~l~giLD~l~~Ls~~qiR~lf~-il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~G 574 (1426)
T PF14631_consen 496 VLCELAEKNPSELQPFATFLKGILDYLDNLSLQQIRKLFD-ILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRIG 574 (1426)
T ss_dssp HHHHHHHH-HHHHHHTHHHHHGGGGGGGG--HHHHHHHHH-HHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHHh
Confidence 8888888788877777665555542211223456776652 322222100001112235555566677888888777765
Q ss_pred HHHHHHHHH
Q 003081 540 AKAICKLGE 548 (850)
Q Consensus 540 a~alg~la~ 548 (850)
.-+.-.++.
T Consensus 575 IIGav~~i~ 583 (1426)
T PF14631_consen 575 IIGAVMMIK 583 (1426)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 544333333
No 232
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=73.64 E-value=21 Score=34.11 Aligned_cols=106 Identities=17% Similarity=0.207 Sum_probs=67.2
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccC--CC
Q 003081 523 LICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAE--DP 600 (850)
Q Consensus 523 ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~--~~ 600 (850)
.....+.+++|..= .-|.+++... .......+..|.+.|..+.+......|..|-.++.+|+..+..+ ..
T Consensus 13 ATs~~~~~~Dw~~~----l~icD~i~~~----~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~ 84 (140)
T PF00790_consen 13 ATSESLPSPDWSLI----LEICDLINSS----PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASK 84 (140)
T ss_dssp HT-TTSSS--HHHH----HHHHHHHHTS----TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSH
T ss_pred HhCcCCCCCCHHHH----HHHHHHHHcC----CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHH
Confidence 33344667788542 2344444432 22346788889999988888888899999999999998655321 11
Q ss_pred CchHHHHHHHHHHHhhcCHH---HHHHHHHHHHHHHHHcCCc
Q 003081 601 TTPFAIVDMVSSACRKKIKK---YREAAFSCLEQVIKAFRDP 639 (850)
Q Consensus 601 ~~~~~i~~~l~~e~~r~~~~---~R~~Al~~Lg~l~~~~~~~ 639 (850)
.|+..+.+.+... .... +|..++..+......|+.+
T Consensus 85 ~fl~~l~~l~~~~---~~~~~~~Vk~k~l~ll~~W~~~f~~~ 123 (140)
T PF00790_consen 85 EFLDELVKLIKSK---KTDPETPVKEKILELLQEWAEAFKSD 123 (140)
T ss_dssp HHHHHHHHHHHHT---TTHHHSHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHccC---CCCchhHHHHHHHHHHHHHHHHHCCC
Confidence 2344333333222 2233 8999999999999999654
No 233
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=73.63 E-value=1.3e+02 Score=32.45 Aligned_cols=75 Identities=9% Similarity=0.103 Sum_probs=51.6
Q ss_pred hHHhhHHHHHHHHHHhh------cCC----CHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcC--CCChhhHHH
Q 003081 512 TLQLYLGEIVSLICEGI------ASS----SWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVP--GRLWEGKDA 579 (850)
Q Consensus 512 ~i~~yl~eIl~ll~~~L------~d~----s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~--~r~~~gKe~ 579 (850)
-+.||+..+++-+..|+ +++ ...+|..||..++-+++.++......-|.+...+.+++- .|++...-.
T Consensus 270 FvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YG 349 (450)
T COG5095 270 FVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYG 349 (450)
T ss_pred eecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhh
Confidence 35788888888777764 223 246999999999999998887766556777777777773 344444444
Q ss_pred HHHHHHH
Q 003081 580 LLYAIGS 586 (850)
Q Consensus 580 vL~aL~~ 586 (850)
.+..+..
T Consensus 350 alkgls~ 356 (450)
T COG5095 350 ALKGLSI 356 (450)
T ss_pred hhhhhhh
Confidence 4554443
No 234
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=72.55 E-value=1.5e+02 Score=32.31 Aligned_cols=284 Identities=13% Similarity=0.182 Sum_probs=134.6
Q ss_pred HHHHHHhhcC-hhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhc-ccccch----HHHHHHHHHHhhhhcCcHH
Q 003081 342 TLDLCINVVD-TESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIG-MDIKPY----TSMLLRLLFPVVKEEKSAA 415 (850)
Q Consensus 342 al~~~~~~ld-~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~-~~~~py----~~~lL~~Ll~~l~~D~n~~ 415 (850)
.++.+.+... ....+.++|.|...+..+ +..+|.-++..+..+...+. .++... ...+++.++.++ -..+.+
T Consensus 66 cLERLfkakegahlapnlmpdLQrGLiad-dasVKiLackqigcilEdcDtnaVseillvvNaeilklildcI-ggedde 143 (524)
T KOG4413|consen 66 CLERLFKAKEGAHLAPNLMPDLQRGLIAD-DASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCI-GGEDDE 143 (524)
T ss_pred HHHHHHhhccchhhchhhhHHHHhcccCC-cchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHH-cCCcHH
Confidence 3444444322 234577888888777654 44567766666666666554 222221 236788888888 467889
Q ss_pred HHHHHHHHHHHHhhhCCHHHHHHHHH-----HH--HHhhc-CCchhhHHHHHHHHHHHhhchhhhhhhHhh-HhHHHHHH
Q 003081 416 AKRAFASACASVLKYATPSQAQKLIE-----ET--AALHI-DDKNSQISCAILLKSYSSVASDVLSGYHAV-IVPVIFIS 486 (850)
Q Consensus 416 Vr~~~a~alg~L~~~~~~~~v~~li~-----~l--~~~~~-~d~~~r~~~~~~l~al~~~~~~~f~~~~~~-vlP~l~~~ 486 (850)
|.+++..++.++... +..+..+.+ .+ ..+-. -++-.|.-+-.++-.|.+.++.....+-.. ++..+..-
T Consensus 144 VAkAAiesikrialf--paaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaE 221 (524)
T KOG4413|consen 144 VAKAAIESIKRIALF--PAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAE 221 (524)
T ss_pred HHHHHHHHHHHHHhc--HHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHH
Confidence 999888888776543 111211111 00 00000 012224444555566666666554333221 23333322
Q ss_pred hcC-CchHHHHHHHHHHHHhcCCChhhHHhhHH--HHHHHHHHhh----cCCCHHHHHHHHHHHHHHHHH------hCcc
Q 003081 487 RFE-DDKYVSDLFEELWEENTSGDRVTLQLYLG--EIVSLICEGI----ASSSWSSKRKSAKAICKLGEI------LGES 553 (850)
Q Consensus 487 ~~d-~~~~v~~~~~~v~~~l~~~~~~~i~~yl~--eIl~ll~~~L----~d~s~~vr~~aa~alg~la~~------~g~~ 553 (850)
+.. .|--|+....+.+.++.... +-+.|++ .+++++...+ ++|-.+.|. .-.+|.+-.+ ....
T Consensus 222 lkGteDtLVianciElvteLaete--HgreflaQeglIdlicnIIsGadsdPfekfra--lmgfgkffgkeaimdvseea 297 (524)
T KOG4413|consen 222 LKGTEDTLVIANCIELVTELAETE--HGREFLAQEGLIDLICNIISGADSDPFEKFRA--LMGFGKFFGKEAIMDVSEEA 297 (524)
T ss_pred hcCCcceeehhhHHHHHHHHHHHh--hhhhhcchhhHHHHHHHHhhCCCCCcHHHHHH--HHHHHHHhcchHHhhcCHHH
Confidence 332 22224544455554443311 1123432 2444444443 233333332 2233322211 1111
Q ss_pred hhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccc--cccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 003081 554 LSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKD--ISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQ 631 (850)
Q Consensus 554 l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~--l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~ 631 (850)
.-..++..+..-.+.+...+++.-+..+.++|.+.++.+.. +....+| ..-..+.+...++...-...++.||..
T Consensus 298 icealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgpp---aaehllarafdqnahakqeaaihaLaa 374 (524)
T KOG4413|consen 298 ICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPP---AAEHLLARAFDQNAHAKQEAAIHALAA 374 (524)
T ss_pred HHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCCh---HHHHHHHHHhcccccchHHHHHHHHHH
Confidence 11122223333333444456788999999999887665421 1111222 222233333344444556677788877
Q ss_pred HHHHc
Q 003081 632 VIKAF 636 (850)
Q Consensus 632 l~~~~ 636 (850)
+....
T Consensus 375 Iagel 379 (524)
T KOG4413|consen 375 IAGEL 379 (524)
T ss_pred hhccc
Confidence 66544
No 235
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.86 E-value=52 Score=42.75 Aligned_cols=211 Identities=13% Similarity=0.044 Sum_probs=113.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCc-chhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCC
Q 003081 521 VSLICEGIASSSWSSKRKSAKAICKLGEILGE-SLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAED 599 (850)
Q Consensus 521 l~ll~~~L~d~s~~vr~~aa~alg~la~~~g~-~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~ 599 (850)
+..+.+.+.-.+...|..|...+++++..... .....+|.......+-+-+.+...|+...+.+..+..++++.+.
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~ls--- 119 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLS--- 119 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhh---
Confidence 34445556667788999888889988875432 22222444333444444666788999999999999999987653
Q ss_pred CCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCc---h----hHHhHHHHHHhh-cccccccCCCCCCCCCCCc
Q 003081 600 PTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDP---K----FFNIIFPLLFEM-CGSTALNKSGQVPLPSDAS 671 (850)
Q Consensus 600 ~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~~~---~----~~~iv~~~l~~~-~~~~~~~~~~~~~~~~~~~ 671 (850)
|++..+++...-...+....+-.+|...+.. .+... + +...+.+++.+. ..+..++ -+++...+.
T Consensus 120 -p~LK~li~~wl~~~~d~~~~vs~aa~~sf~~---~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~s---lSd~~~~s~ 192 (1312)
T KOG0803|consen 120 -PFLKSLIPPWLGGQFDLDYPVSEAAKASFKD---GFAEEKDRHVWFKCDPEIFYLVTEILVKETPDS---LSDLRTLSS 192 (1312)
T ss_pred -HHHHhhhhhhhheecccchHHHHHHHHHHHh---hcChhhhHHHHHHhhHHHHHHHHHHHhccCccc---cchhhhcch
Confidence 5777777766555444444455555544443 33321 1 244445555554 2212111 111122222
Q ss_pred ccchhhh-cccccHHHHHHhhhhhccccccccHHHHHHHHHHHH-----HhhcCCCCCchHHHHHHHHHHHHHHHHhhc
Q 003081 672 KEESADE-SVSAPLDKVLDCVSSCIHVAHVNDIIEQEKNLVQLF-----TISLSPGFPWTVKMSAFSSIKELCSRLQKT 744 (850)
Q Consensus 672 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 744 (850)
+ +.|.+ .|-.+.- +.++...++-.-+.+-..+...-.+++ .-+.+.+....++.++++++..+++.+...
T Consensus 193 E-e~E~k~~Rvi~ss--Ll~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~ 268 (1312)
T KOG0803|consen 193 E-ELESKYQRVISSS--LLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNR 268 (1312)
T ss_pred H-HHHHhhHHHHHHH--HHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHh
Confidence 2 22222 2332222 222222221111111111111111111 234556778899999999999999998876
No 236
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=71.74 E-value=46 Score=33.90 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=47.1
Q ss_pred hhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Q 003081 97 FGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLI 164 (850)
Q Consensus 97 ~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~ 164 (850)
--++...++.|..-.|++..++-.|-..+.+++...|+.+.++.++.+.. .-.+.+=.++|--+.
T Consensus 22 ~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~a---mGpe~vL~~lPLnl~ 86 (198)
T PF08161_consen 22 NVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRA---MGPEQVLSILPLNLD 86 (198)
T ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHH---CCHHHHHHHCCCCcc
Confidence 33467777888777888888988888889999988999998888877643 234455556663333
No 237
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.51 E-value=24 Score=38.00 Aligned_cols=65 Identities=14% Similarity=0.097 Sum_probs=47.8
Q ss_pred HhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccC
Q 003081 122 VRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGR 188 (850)
Q Consensus 122 ~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~ 188 (850)
.-+.+||+|.||.++....-.+...+.+...++-...++++.+-+.+... . +-++.|++++.+..
T Consensus 9 v~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~-~-~~a~~alVnlsq~~ 73 (353)
T KOG2973|consen 9 VELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP-A-EPAATALVNLSQKE 73 (353)
T ss_pred HHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc-c-cHHHHHHHHHHhhH
Confidence 33459999999999987777776554456666667889999998887765 3 44556888887653
No 238
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=71.29 E-value=2e+02 Score=33.22 Aligned_cols=67 Identities=16% Similarity=0.139 Sum_probs=39.6
Q ss_pred HHHHHHHhhcChhhHhhHHH-HHHHHHhccCCCchHhhHHHHHHHHHHHhccccc-chHHHHHHHHHHhh
Q 003081 341 DTLDLCINVVDTESLDQLVP-HLARLVRSGIGLNTRVGVASFISLLVQKIGMDIK-PYTSMLLRLLFPVV 408 (850)
Q Consensus 341 eal~~~~~~ld~~~l~~lvp-~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~-py~~~lL~~Ll~~l 408 (850)
.|++.++.++..+.+..+.. .|...+++.. .-.|..++-++...+......-. +..+.+...|...|
T Consensus 109 ~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~s-a~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L 177 (441)
T PF12054_consen 109 KALGLLLSYWPESSLQEIFQPLLLPYLNSPS-ATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL 177 (441)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHhcchh-HHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH
Confidence 57777777776666666554 5777776652 33467777777777665542221 11245555555555
No 239
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=71.17 E-value=18 Score=32.67 Aligned_cols=62 Identities=10% Similarity=-0.022 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhc
Q 003081 148 KRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMD 209 (850)
Q Consensus 148 ~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ld 209 (850)
+..+.-|++.++..+..+|++=...||..|..-|.-+++..+..-+..+-.++++..+.++.
T Consensus 2 ~~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~ 63 (102)
T PF12333_consen 2 PELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLG 63 (102)
T ss_pred hHHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHC
Confidence 35678899999999999999999999999999998888877755466666677777666664
No 240
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=70.64 E-value=35 Score=30.74 Aligned_cols=59 Identities=15% Similarity=0.074 Sum_probs=50.5
Q ss_pred hhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcc-hhhhHHHHHHHHHHhc
Q 003081 511 VTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGES-LSNYHHVLLESIMKEV 569 (850)
Q Consensus 511 ~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~-l~~~l~~llp~L~~~L 569 (850)
..+.||.+.++..+...+++-+.+||.-|...|.-+.+.+|+. +..+...+++-...-+
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll 62 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLL 62 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999999999887 5556666777666666
No 241
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=69.49 E-value=35 Score=32.84 Aligned_cols=101 Identities=15% Similarity=0.169 Sum_probs=68.3
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccC--CCCchH
Q 003081 527 GIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAE--DPTTPF 604 (850)
Q Consensus 527 ~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~--~~~~~~ 604 (850)
.+..++|.+ +-++|..+... ...-...+..|.+.+..+....-...|..|-.++.+|+..+..+ ...|++
T Consensus 12 ~l~~~dw~~-------il~icD~I~~~-~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~ 83 (144)
T cd03568 12 KLTSENWGL-------ILDVCDKVKSD-ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQ 83 (144)
T ss_pred cCCCcCHHH-------HHHHHHHHhcC-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHH
Confidence 355677854 23334333322 22236778888899988888888888999999999998765321 123444
Q ss_pred HHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHcCCc
Q 003081 605 AIVDMVSSACRK-KIKKYREAAFSCLEQVIKAFRDP 639 (850)
Q Consensus 605 ~i~~~l~~e~~r-~~~~~R~~Al~~Lg~l~~~~~~~ 639 (850)
.++ +-+.+ .+..++..++..+......|+++
T Consensus 84 eL~----kl~~~~~~~~Vk~kil~li~~W~~~f~~~ 115 (144)
T cd03568 84 ELK----KLINDRVHPTVKEKLREVVKQWADEFKND 115 (144)
T ss_pred HHH----HHhcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 443 33333 78999999999999999999754
No 242
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=67.48 E-value=1.7e+02 Score=31.00 Aligned_cols=175 Identities=18% Similarity=0.183 Sum_probs=93.8
Q ss_pred hhhHHhhH-HHHHHHhh---hhhchhhh-hHHHHHHhhcC-CCCHhHHHHHHHHHHHhccCChHHHHHHH--HHHHHHHH
Q 003081 92 KRGAAFGF-SKIAKQAG---DALKPHLR-LLIPKLVRFQY-DPDKNVQDAMAHIWKSLVADPKRTIDEHL--DLIFDDLL 163 (850)
Q Consensus 92 r~gAa~gl-~~I~~~~~---~~l~p~L~-~lvp~L~r~~~-Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~--~~Il~~Ll 163 (850)
|--.+.++ ..|+++.. ..++.+++ -++|.|-..-. -|...+|-+...+.+++++.....+-.++ .+|+|-.+
T Consensus 66 RVcnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcL 145 (262)
T PF04078_consen 66 RVCNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCL 145 (262)
T ss_dssp HHHHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHH
Confidence 33445555 66666552 23333333 56777643322 46789999999999999974433344455 56999999
Q ss_pred HhhCCCChhHHHHHHHHHHHHHccC--------CchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhh
Q 003081 164 IQSGSRLWRSREASCLSLADIIQGR--------KFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCD 235 (850)
Q Consensus 164 ~~l~~~~wRVReaa~~Al~~Ll~~~--------~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~ 235 (850)
..|...+--.+..|..-+-.++... ..+.+. .+..++......+ +++-..++++.+.+.-.|.++
T Consensus 146 r~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~-av~~vL~~mV~~l------~~~pS~RLLKhIIrCYlRLsd 218 (262)
T PF04078_consen 146 RIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFF-AVAMVLNKMVEQL------VKQPSPRLLKHIIRCYLRLSD 218 (262)
T ss_dssp HHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHH-HHHHHHHHHHHHH------HHS--HHHHHHHHHHHHHHTT
T ss_pred HHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHH-HHHHHHHHHHHHH------ccCCChhHHHHHHHHHHHHcc
Confidence 9987666566677776666666421 112221 1222222222211 122223566666666667765
Q ss_pred cccCcchhHHhHHHHhHHHHhhcc----CCCchhHHHHHHHHHHHHH
Q 003081 236 VTLTEISDARQSMDIVLPFLLAEG----ILSKVDSISKASIGVVMKL 278 (850)
Q Consensus 236 ~~~~~~~~~~~~l~~lLP~Ll~~g----L~s~~~evr~~a~~~L~~l 278 (850)
.. .+.+.+...+|..+..| +..+++.++..-.+.+.++
T Consensus 219 np-----rar~aL~~~LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 219 NP-----RAREALRQCLPDQLRDGTFSNILKDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp ST-----THHHHHHHHS-GGGTSSTTTTGGCS-HHHHHHHHHHHHHT
T ss_pred CH-----HHHHHHHHhCcHHHhcHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 43 36678888899876433 2234566776665555543
No 243
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.23 E-value=3.2e+02 Score=33.93 Aligned_cols=185 Identities=14% Similarity=0.134 Sum_probs=119.8
Q ss_pred cchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHh
Q 003081 288 PHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVR 367 (850)
Q Consensus 288 P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk 367 (850)
|-..+++..++..+.-..++ .|..|..+. .|.++.-|... .+++..+-..+++..++-++..+.+.+.
T Consensus 405 qIy~qlvei~l~K~~~Ps~e--~~~~W~S~s----~e~F~~YR~di------SD~~~~~Y~ilgd~ll~~L~~~l~q~~a 472 (982)
T KOG2022|consen 405 QIYAQLVEILLKKLALPSKE--IWLSWSSDS----REQFESYRKDI------SDLLMSSYSILGDGLLDFLIDTLEQALA 472 (982)
T ss_pred HHHHHHHHHHHHHhcCCCHH--HhccCCcch----HHHHHHHHHHH------HHHHHHHHHHHhHHHHHHHHHHHHHhhh
Confidence 55566666666666544433 455566553 56777777533 3566666667776667778888888887
Q ss_pred ccCCCch---H-hhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCC--HHHHHHHHH
Q 003081 368 SGIGLNT---R-VGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYAT--PSQAQKLIE 441 (850)
Q Consensus 368 ~~~~~~t---r-~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~--~~~v~~li~ 441 (850)
++.+.|. | .+|+=.+...+...+....+...++++.+...=.+-.|+...+.....+|.+..... +..+...++
T Consensus 473 a~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~ 552 (982)
T KOG2022|consen 473 AGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLP 552 (982)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHH
Confidence 7644443 3 366666777788888888888888887765442233577777888888887765432 223445555
Q ss_pred HHHHhhcCCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHH
Q 003081 442 ETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFI 485 (850)
Q Consensus 442 ~l~~~~~~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~ 485 (850)
.+.+.+. +...-..+...+..+++.++..+.+|...|+.+...
T Consensus 553 ~L~~~Lh-~sk~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e 595 (982)
T KOG2022|consen 553 LLFQGLH-NSKESEQAISTLKTLCETCPESLDPYADQFSAVCYE 595 (982)
T ss_pred HHHHHhc-CchHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHH
Confidence 5555442 222222334457888999999999999999877653
No 244
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=65.58 E-value=2.1e+02 Score=31.24 Aligned_cols=130 Identities=12% Similarity=0.082 Sum_probs=60.7
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHHccCC-chh-hhHHH----HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhh
Q 003081 162 LLIQSGSRLWRSREASCLSLADIIQGRK-FDQ-VGKHL----RRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCD 235 (850)
Q Consensus 162 Ll~~l~~~~wRVReaa~~Al~~Ll~~~~-~~~-l~~~L----~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~ 235 (850)
++..+ +..-.+.+....-++|++...+ ..+ +..+- ...|..+++.++-....++..+...+..+.. ..+
T Consensus 63 lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~----~~~ 137 (312)
T PF03224_consen 63 LLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLS----QGP 137 (312)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHT----STT
T ss_pred HHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHH----cCC
Confidence 44444 3344566666666677666433 111 11111 1267778888877777787776544444321 111
Q ss_pred cccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhc--CcccccchHHHHHHHHHhc
Q 003081 236 VTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGA--GIAIRPHLSDLVSCMLESL 301 (850)
Q Consensus 236 ~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~--g~~l~P~lp~Lvp~LL~~L 301 (850)
. .......+.+..++.+|- ..+.++..+++..++.++..+.+.- ...+-. ...++.+...+
T Consensus 138 ~--~~~~~~~~~l~~ll~~L~-~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~--~~~v~~l~~iL 200 (312)
T PF03224_consen 138 K--RSEKLVKEALPKLLQWLS-SQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK--SNGVSPLFDIL 200 (312)
T ss_dssp T----HHHHHHHHHHHHHHHH--TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT--HHHHHHHHHHH
T ss_pred c--cccchHHHHHHHHHHHHH-HhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh--cCcHHHHHHHH
Confidence 1 111111245555555543 2233455677888999999997653 222211 55566666666
No 245
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=65.29 E-value=2.3e+02 Score=31.51 Aligned_cols=132 Identities=11% Similarity=0.171 Sum_probs=91.7
Q ss_pred HhhHHHHHHHhh--hhhchhh--hhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHH----HHHHHHHHHHHHHHhhC
Q 003081 96 AFGFSKIAKQAG--DALKPHL--RLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRT----IDEHLDLIFDDLLIQSG 167 (850)
Q Consensus 96 a~gl~~I~~~~~--~~l~p~L--~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~----i~~~~~~Il~~Ll~~l~ 167 (850)
|.--|.|+..|- +.+..++ ...+-+++.|...|+=.|..-+-..++.+...-+.. +..|++.++...-..+.
T Consensus 140 al~~g~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~ 219 (335)
T PF08569_consen 140 ALNCGDMLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLE 219 (335)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT
T ss_pred cchHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344477777762 2333322 356677899999999999888877777766544433 45567888887788889
Q ss_pred CCChhHHHHHHHHHHHHHccCCc-hhhhHHH--HHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Q 003081 168 SRLWRSREASCLSLADIIQGRKF-DQVGKHL--RRIWTAAFRAMDDIKETVRTAGDKLCRSVT 227 (850)
Q Consensus 168 ~~~wRVReaa~~Al~~Ll~~~~~-~~l~~~L--~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~ 227 (850)
+.++-+|.-|..-||+|+..+.- ..+..|+ ++-+...+.++.|....+|-.|....+.+.
T Consensus 220 s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFV 282 (335)
T PF08569_consen 220 SSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFV 282 (335)
T ss_dssp -SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH
T ss_pred CCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHH
Confidence 99999999999999999986653 3333442 244555667788999999999988888664
No 246
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.15 E-value=2.1e+02 Score=31.13 Aligned_cols=107 Identities=11% Similarity=0.114 Sum_probs=66.7
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhccc
Q 003081 159 FDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTL 238 (850)
Q Consensus 159 l~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~ 238 (850)
+.++...+.+.++-||.+|..-+..+..+ +...+..|=...++.++.++.|.++ .+.||. .+++..- +.
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~-~~~a~~----alVnlsq---~~-- 73 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP-AEPAAT----ALVNLSQ---KE-- 73 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc-ccHHHH----HHHHHHh---hH--
Confidence 45566777888999999999877777655 6666777777888888888888876 444443 3332210 00
Q ss_pred CcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHH
Q 003081 239 TEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVK 280 (850)
Q Consensus 239 ~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~ 280 (850)
.-.+.+++.++.+++.+ +.++.+......+..+.++++
T Consensus 74 ---~l~~~ll~~~~k~l~~~-~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 74 ---ELRKKLLQDLLKVLMDM-LTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred ---HHHHHHHHHHHHHHHHH-hcCcccchHHHHHHHHHHhcc
Confidence 11223555555555432 444545666677777777754
No 247
>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.
Probab=64.88 E-value=68 Score=35.06 Aligned_cols=32 Identities=25% Similarity=0.462 Sum_probs=23.4
Q ss_pred HHHHHHHHHHcCCchhHHhHHHHHHhhccccc
Q 003081 626 FSCLEQVIKAFRDPKFFNIIFPLLFEMCGSTA 657 (850)
Q Consensus 626 l~~Lg~l~~~~~~~~~~~iv~~~l~~~~~~~~ 657 (850)
-+++..+.+..+..-+.+.+.|++.++.+++.
T Consensus 80 TK~m~~y~k~~G~~YL~~tL~pvI~~i~~~~~ 111 (313)
T cd05394 80 TRCLDEMMKIVGKHYLKVTLKPVLDEICDSPK 111 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 35566677666665678899999999987543
No 248
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=64.19 E-value=53 Score=30.96 Aligned_cols=114 Identities=16% Similarity=0.132 Sum_probs=70.4
Q ss_pred HHHHHhhhc---CCchHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhhh----------------hhchhhhhHHHHHH
Q 003081 62 ELCNLANEM---GQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGD----------------ALKPHLRLLIPKLV 122 (850)
Q Consensus 62 ~l~~lA~~~---g~p~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~----------------~l~p~L~~lvp~L~ 122 (850)
.|..+|... +||+++..++++.+++. ........-|..+.+...+ .+....+.++..++
T Consensus 11 ~l~~i~~~~~P~~Wp~~l~~l~~~~~~~~--~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~ 88 (148)
T PF08389_consen 11 VLAEIAKRDWPQQWPDFLEDLLQLLQSSP--QHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILS 88 (148)
T ss_dssp HHHHHHHHHTTTTSTTHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHChhhCchHHHHHHHHhccch--hHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555554 78999999999887652 3334444444555554422 23334456666666
Q ss_pred hhcCCCC----HhHHHHHHHHHHHhccCChHHHHHHH-HHHHHHHHHhhCCCChhHHHHHHHHH
Q 003081 123 RFQYDPD----KNVQDAMAHIWKSLVADPKRTIDEHL-DLIFDDLLIQSGSRLWRSREASCLSL 181 (850)
Q Consensus 123 r~~~Dp~----~~VR~a~~~iw~~Lv~d~~~~i~~~~-~~Il~~Ll~~l~~~~wRVReaa~~Al 181 (850)
+++.... +.+...+..+++..++..+ ++... ..+++.++..+++++ .|++||.+|
T Consensus 89 ~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 89 QILSQSSSEANEELVKAALKCLKSWISWIP--IELIINSNLLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHhhccccHHHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHHcCCHH--HHHHHHHhC
Confidence 6555544 7888888888888886432 22222 348888888886654 478887654
No 249
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=63.72 E-value=3.4e+02 Score=33.07 Aligned_cols=108 Identities=19% Similarity=0.281 Sum_probs=65.5
Q ss_pred HHHHHhhcCCCCHhHHHHHHHHHHHhc-cCChHHHHHHHHH--HHHHHHHhhCCCChhHHHHHHHHHHHHHccCCc--hh
Q 003081 118 IPKLVRFQYDPDKNVQDAMAHIWKSLV-ADPKRTIDEHLDL--IFDDLLIQSGSRLWRSREASCLSLADIIQGRKF--DQ 192 (850)
Q Consensus 118 vp~L~r~~~Dp~~~VR~a~~~iw~~Lv-~d~~~~i~~~~~~--Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~--~~ 192 (850)
+|..+.|+..++|.|+-.+..-...+. .|.+ +..-... =++.|+..+.++.-+|+..+|.|+-+|+-+... ..
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~--ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNK--IKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhhHH--HHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 455556667777777766644444433 2221 2222211 246678888899999999999999999998765 33
Q ss_pred hh-HHHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHH
Q 003081 193 VG-KHLRRIWTAAFRAMDD-IKETVRTAGDKLCRSVTS 228 (850)
Q Consensus 193 l~-~~L~~i~~~l~~~ldD-~k~~VR~aA~~~~~~L~~ 228 (850)
+. .+.+. ++.+.+++.. ....||+.++.++|.|+.
T Consensus 313 lai~~~~G-v~~l~~~Lr~t~D~ev~e~iTg~LWNLSS 349 (717)
T KOG1048|consen 313 LAIKELNG-VPTLVRLLRHTQDDEVRELITGILWNLSS 349 (717)
T ss_pred hhhhhcCC-hHHHHHHHHhhcchHHHHHHHHHHhcccc
Confidence 32 22222 2333344432 235788888888887764
No 250
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=63.69 E-value=2.4e+02 Score=31.28 Aligned_cols=192 Identities=13% Similarity=0.077 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHH-------H----HHHHHHHHHhhcCCchhhHHHHHHHHHH
Q 003081 396 YTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQ-------A----QKLIEETAALHIDDKNSQISCAILLKSY 464 (850)
Q Consensus 396 y~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~-------v----~~li~~l~~~~~~d~~~r~~~~~~l~al 464 (850)
|...++..++..+ ..-....|+.++..++.+++...... + .+++..+...| ++++.-..|+.++...
T Consensus 73 ~~~dll~~Li~~L-~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy-~~~dial~~g~mlRec 150 (335)
T PF08569_consen 73 YRSDLLYLLIRNL-PKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY-ENPDIALNCGDMLREC 150 (335)
T ss_dssp HHHTHHHHHHHTG-GGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG-GSTTTHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHh-hhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh-cCccccchHHHHHHHH
Confidence 4445666677776 44567788888888888877543221 1 12233344444 3455555666666655
Q ss_pred HhhchhhhhhhH-hhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhh----HHhhHHHHHHHHHHhhcCCCHHHHHHH
Q 003081 465 SSVASDVLSGYH-AVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVT----LQLYLGEIVSLICEGIASSSWSSKRKS 539 (850)
Q Consensus 465 ~~~~~~~f~~~~-~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~----i~~yl~eIl~ll~~~L~d~s~~vr~~a 539 (850)
+++- ...+-.+ +..+--+|.....+.=++..-+..++.++....+.. +..+.+.++......+.+++.-+|+++
T Consensus 151 ~k~e-~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 151 IKHE-SLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp TTSH-HHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred HhhH-HHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 4431 1000000 111111222222222233332223334433332222 334457788888888999999999999
Q ss_pred HHHHHHHHHHhC--cchhhhH--HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHh
Q 003081 540 AKAICKLGEILG--ESLSNYH--HVLLESIMKEVPGRLWEGKDALLYAIGSISTS 590 (850)
Q Consensus 540 a~alg~la~~~g--~~l~~~l--~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~ 590 (850)
.+.||++...-. ..+..|+ +.-+-.++.-|++++-..+-..+..+--++.+
T Consensus 230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 999999996321 1122232 44455555666666656666666666555543
No 251
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=62.68 E-value=67 Score=30.84 Aligned_cols=102 Identities=14% Similarity=0.161 Sum_probs=69.0
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccC--CCCchH
Q 003081 527 GIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAE--DPTTPF 604 (850)
Q Consensus 527 ~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~--~~~~~~ 604 (850)
.+..++|..=- -+.+++..-. . .-...+..|.+.+..++.......|..|-.++.+|+..+..+ ...|++
T Consensus 16 ~l~~~dw~~il----eicD~In~~~--~--~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~ 87 (142)
T cd03569 16 LLGEPDLASIL----EICDMIRSKD--V--QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMD 87 (142)
T ss_pred ccCccCHHHHH----HHHHHHhCCC--C--CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHH
Confidence 44567776422 3444443211 1 235677888888888888888888888899999998755321 234555
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCc
Q 003081 605 AIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDP 639 (850)
Q Consensus 605 ~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~~~ 639 (850)
.+++.+.. .....+|..++..+.....+|+++
T Consensus 88 ~l~~l~~~---~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 88 ELKDLIKT---TKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHHHHcc---cCCHHHHHHHHHHHHHHHHHhCCC
Confidence 55554433 567899999999999999999764
No 252
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=62.43 E-value=10 Score=33.33 Aligned_cols=47 Identities=17% Similarity=0.362 Sum_probs=33.5
Q ss_pred hhhhhHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHH
Q 003081 90 NSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMA 137 (850)
Q Consensus 90 ~sr~gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~ 137 (850)
..|.|+..||++++....=.+-|++++++..|-++..||.| |++++.
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~~~~-I~~tvk 50 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHANDPQP-IRTTVK 50 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS-SS-HHHHTH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCCCch-HHHHHH
Confidence 45779999999999876556667999999999999999764 444443
No 253
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=61.74 E-value=2.6e+02 Score=30.93 Aligned_cols=168 Identities=14% Similarity=0.071 Sum_probs=80.8
Q ss_pred hHhHHHHHHhcCCchHHHHHHHHHHHHhcC-----CChhhHHhhHHHHHHHHHHhhcCCCHHHH---HHHHHHHHHHHHH
Q 003081 478 VIVPVIFISRFEDDKYVSDLFEELWEENTS-----GDRVTLQLYLGEIVSLICEGIASSSWSSK---RKSAKAICKLGEI 549 (850)
Q Consensus 478 ~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~-----~~~~~i~~yl~eIl~ll~~~L~d~s~~vr---~~aa~alg~la~~ 549 (850)
.++..+-.|+.+....+|..|.....+... .....+..+++.+.+.+.+..+.|..... -.+++++-.+...
T Consensus 61 ~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~ 140 (339)
T PF12074_consen 61 KVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSW 140 (339)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccc
Confidence 345555567777666688777655444332 12223456667777777776666543211 1122222211100
Q ss_pred hCcchhhh---H--------H--HHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhh
Q 003081 550 LGESLSNY---H--------H--VLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRK 616 (850)
Q Consensus 550 ~g~~l~~~---l--------~--~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r 616 (850)
..+.+... . + -+.+-+.+.+. +.+--.-++.++..+.......... .....+-.+++.-+..
T Consensus 141 ~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~--~~~d~~w~~~al~~~~~~~~~~~~~---~~~~~~~~a~i~ll~s 215 (339)
T PF12074_consen 141 KLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLA--SEEDLCWLLRALEALLSDHPSELSS---DKSSAWAQAFIYLLCS 215 (339)
T ss_pred cchhhhhhhhhhhhhccCCCcchhcCHHHHhccC--CHhHHHHHHHHHHHHHhcchhhhhh---hHHHHHHHHHHHHHHc
Confidence 00000000 0 0 01122222211 1222334555666665544332211 1134555666666655
Q ss_pred c--CHHHHHHHHHHHHHHHHHcCCchhHHhHHHHHHh
Q 003081 617 K--IKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFE 651 (850)
Q Consensus 617 ~--~~~~R~~Al~~Lg~l~~~~~~~~~~~iv~~~l~~ 651 (850)
. ...+|+.|+.++.++....+.. +...+..-+..
T Consensus 216 ~~~~~~vR~~A~~~l~~l~~~~~~~-l~~~li~~l~~ 251 (339)
T PF12074_consen 216 SNVSWKVRRAALSALKKLYASNPEL-LSKSLISGLWK 251 (339)
T ss_pred CCCCHHHHHHHHHHHHHHHHhChHH-HHHHHHHHHHH
Confidence 5 7899999999999998877642 44444333333
No 254
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.56 E-value=5e+02 Score=34.24 Aligned_cols=113 Identities=14% Similarity=0.091 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhh
Q 003081 155 LDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLC 234 (850)
Q Consensus 155 ~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~ 234 (850)
++.-+..+++.++-++.-.+.-|..-+.+++.....+.+.+.++......-++.-|....||.+.......+..-+-+.
T Consensus 39 ~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~- 117 (1312)
T KOG0803|consen 39 LDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKK- 117 (1312)
T ss_pred cCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHH-
Confidence 6677788888888888889998888899998877777766655554444445667888999999876666654433222
Q ss_pred hcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHH
Q 003081 235 DVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKL 278 (850)
Q Consensus 235 ~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~l 278 (850)
..++++.++|+.+. |..+...+|...|...+.+.
T Consensus 118 ---------lsp~LK~li~~wl~-~~~d~~~~vs~aa~~sf~~~ 151 (1312)
T KOG0803|consen 118 ---------LSPFLKSLIPPWLG-GQFDLDYPVSEAAKASFKDG 151 (1312)
T ss_pred ---------hhHHHHhhhhhhhh-eecccchHHHHHHHHHHHhh
Confidence 34588999998873 55555556665555555443
No 255
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=60.20 E-value=56 Score=32.30 Aligned_cols=97 Identities=13% Similarity=0.144 Sum_probs=58.4
Q ss_pred HHHHHHHHHHH-HHhCcchhhhHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHhccccccc-CCCCchHHHHHHHHHH
Q 003081 537 RKSAKAICKLG-EILGESLSNYHHVLLESIMKEVPG-RLWEGKDALLYAIGSISTSCHKDISA-EDPTTPFAIVDMVSSA 613 (850)
Q Consensus 537 ~~aa~alg~la-~~~g~~l~~~l~~llp~L~~~L~~-r~~~gKe~vL~aL~~l~~~~~~~l~~-~~~~~~~~i~~~l~~e 613 (850)
..|...+.+|. .-.|+-+.|++..++|...+.|.. +..+...-+|-..++++...+ -+.. .+......|++.+++.
T Consensus 60 ~kA~~IF~~L~~~l~~efl~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iq-l~e~~~~~~~vk~L~~~mv~S 138 (174)
T PF04510_consen 60 VKAFHIFICLPMPLYGEFLIPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQ-LLESSMRVDLVKELLPKMVKS 138 (174)
T ss_pred HHHHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHH
Confidence 45677788887 456677888999999999999944 445555555544455443322 1111 1122344444444444
Q ss_pred ----HhhcCH-HHHHHHHHHHHHHHH
Q 003081 614 ----CRKKIK-KYREAAFSCLEQVIK 634 (850)
Q Consensus 614 ----~~r~~~-~~R~~Al~~Lg~l~~ 634 (850)
..+... ..-+.|+.-+..++.
T Consensus 139 v~elV~~g~E~~~l~rgl~~~e~~v~ 164 (174)
T PF04510_consen 139 VKELVERGMEVGFLRRGLRDFESFVS 164 (174)
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 346665 777788887777665
No 256
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=58.95 E-value=82 Score=29.75 Aligned_cols=62 Identities=13% Similarity=-0.015 Sum_probs=41.4
Q ss_pred cCCCCHhHHHHHHHHHHHhccCChHHH-HHHHH-HHHHHHHHhhCC---CChhHHHHHHHHHHHHHc
Q 003081 125 QYDPDKNVQDAMAHIWKSLVADPKRTI-DEHLD-LIFDDLLIQSGS---RLWRSREASCLSLADIIQ 186 (850)
Q Consensus 125 ~~Dp~~~VR~a~~~iw~~Lv~d~~~~i-~~~~~-~Il~~Ll~~l~~---~~wRVReaa~~Al~~Ll~ 186 (850)
+..+||+|+--+..+|..|+.++...+ .+.-. ..+.++..-+.+ .+.+||+-+..-+...-.
T Consensus 46 l~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 46 IKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 467899999999999999999886533 22222 455555554443 467888877765555443
No 257
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=58.53 E-value=1.3e+02 Score=29.04 Aligned_cols=59 Identities=10% Similarity=-0.012 Sum_probs=40.0
Q ss_pred cCCCCHhHHHHHHHHHHHhccCChHHHHHHH--HHHHHHHHHhhCC-CChhHHHHHHHHHHH
Q 003081 125 QYDPDKNVQDAMAHIWKSLVADPKRTIDEHL--DLIFDDLLIQSGS-RLWRSREASCLSLAD 183 (850)
Q Consensus 125 ~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~--~~Il~~Ll~~l~~-~~wRVReaa~~Al~~ 183 (850)
+.++||+|+--+...+.+|++++...+...+ ..++..|...+.+ .+..||+-...-+..
T Consensus 46 l~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~ 107 (144)
T cd03568 46 LNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQ 107 (144)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 3679999999999999999998865443222 4566666665655 456677666544433
No 258
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=58.28 E-value=19 Score=26.77 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=19.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHH
Q 003081 199 RIWTAAFRAMDDIKETVRTAGDKL 222 (850)
Q Consensus 199 ~i~~~l~~~ldD~k~~VR~aA~~~ 222 (850)
.+...+.+.+.|.++.||+||..+
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHH
Confidence 666677777899999999998754
No 259
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=57.68 E-value=10 Score=26.89 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=23.8
Q ss_pred hHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHH
Q 003081 94 GAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQD 134 (850)
Q Consensus 94 gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~ 134 (850)
||++|||-|+.+.++. +++..|..|.+|++..+++
T Consensus 1 gA~lgLGl~~aGs~~~------~~~~~L~~~l~~~~~~~~~ 35 (35)
T PF01851_consen 1 GAILGLGLIYAGSGNE------EVLDLLRPYLSDTSNEMIQ 35 (35)
T ss_dssp HHHHHHHHHTTTT--H------HHHHHHHHHHCTSSHHHHH
T ss_pred CcHHHHHHHHcCCCCH------HHHHHHHHHHHhccccccC
Confidence 6889999999887553 2455555556888777664
No 260
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=57.41 E-value=53 Score=30.32 Aligned_cols=78 Identities=12% Similarity=0.129 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 003081 557 YHHVLLESIMKEVP-GRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKA 635 (850)
Q Consensus 557 ~l~~llp~L~~~L~-~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~ 635 (850)
+++.++|.+..++. .+..+-|....--++.++.+.. +. .+.+..++..+.......+. .+.++.|+..+++.
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~--L~---~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP--LS---DEVLNALMESILKNWTQETV--QRQALICLIVLCQS 75 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC--Cc---HHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHc
Confidence 57899999999997 6667788777777777776542 21 12334444444444333222 68899999999987
Q ss_pred c-CCchh
Q 003081 636 F-RDPKF 641 (850)
Q Consensus 636 ~-~~~~~ 641 (850)
. +.+.+
T Consensus 76 q~~~~~l 82 (121)
T PF12397_consen 76 QENVDSL 82 (121)
T ss_pred ccccccC
Confidence 7 44434
No 261
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=57.07 E-value=14 Score=26.33 Aligned_cols=28 Identities=11% Similarity=-0.021 Sum_probs=22.9
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHH
Q 003081 158 IFDDLLIQSGSRLWRSREASCLSLADII 185 (850)
Q Consensus 158 Il~~Ll~~l~~~~wRVReaa~~Al~~Ll 185 (850)
.++.|+..+.+.++++++.+|.||.++.
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4666666677788999999999999875
No 262
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.24 E-value=2.1e+02 Score=37.72 Aligned_cols=90 Identities=18% Similarity=0.113 Sum_probs=60.6
Q ss_pred HHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 003081 464 YSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAI 543 (850)
Q Consensus 464 l~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~al 543 (850)
++...++.|.++..+++ ....++....|-.+..+...+....+...-..+++++|++.+.+.|.+-.|...+...+
T Consensus 1531 ~~~a~~~d~~pl~~k~l----~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li 1606 (1621)
T KOG1837|consen 1531 DSVADKDDLKPLNQKIL----KKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLI 1606 (1621)
T ss_pred hccCChhhhHHHHHHHH----HHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHH
Confidence 33344544555555444 22233344555555555555555444456678999999999999999999999999988
Q ss_pred HHHHHHhCcchhhh
Q 003081 544 CKLGEILGESLSNY 557 (850)
Q Consensus 544 g~la~~~g~~l~~~ 557 (850)
..+=..+|+.+..|
T Consensus 1607 ~q~e~~lGE~l~~y 1620 (1621)
T KOG1837|consen 1607 RQLEEVLGEPLQSY 1620 (1621)
T ss_pred HHHHHHhchhhhhc
Confidence 88888888866544
No 263
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=54.94 E-value=2.9e+02 Score=29.47 Aligned_cols=202 Identities=13% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCh-hhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHH--------HHHHHHHHhhhhc
Q 003081 341 DTLDLCINVVDT-ESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTS--------MLLRLLFPVVKEE 411 (850)
Q Consensus 341 eal~~~~~~ld~-~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~--------~lL~~Ll~~l~~D 411 (850)
+.+..+.+...+ ...+.+.|.+.+.++++ .+-..+.+++..|+......+-.-.+ ..++.++..+ ++
T Consensus 47 ~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss---~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~-d~ 122 (262)
T PF14225_consen 47 DVLESSQPQLWEWGNFEGLQPLLLKGLRSS---STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAF-DD 122 (262)
T ss_pred HHHHHhCCccccCCCchhHHHHHhCccCCC---CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHh-cc
Q ss_pred Cc----HHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhchhhh-hhhHhhHhHHHHHH
Q 003081 412 KS----AAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVL-SGYHAVIVPVIFIS 486 (850)
Q Consensus 412 ~n----~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~~d~~~r~~~~~~l~al~~~~~~~f-~~~~~~vlP~l~~~ 486 (850)
.+ .......|.+++.+++..+.+.+.+++......-..+.+ +.+..++++..+.| ..+...++-++...
T Consensus 123 ~~~i~~~~~~~~~A~~La~~a~~~~~~~La~il~~ya~~~fr~~~------dfl~~v~~~l~~~f~P~~~~~~l~~Ll~l 196 (262)
T PF14225_consen 123 PNPIQPDQECIEIAEALAQVAEAQGLPNLARILSSYAKGRFRDKD------DFLSQVVSYLREAFFPDHEFQILTFLLGL 196 (262)
T ss_pred cccccccHHHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHHhCchhHHHHHHHHHHH
Q ss_pred hcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhh
Q 003081 487 RFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSN 556 (850)
Q Consensus 487 ~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~ 556 (850)
.....+.++....+++..+.+...-. +++.++++..+.+.++.+-| ..|...+..+....|..+..
T Consensus 197 L~n~~~w~~~~~L~iL~~ll~~~d~~-~~~~~dlispllrlL~t~~~---~eAL~VLd~~v~~s~s~~~~ 262 (262)
T PF14225_consen 197 LENGPPWLRRKTLQILKVLLPHVDMR-SPHGADLISPLLRLLQTDLW---MEALEVLDEIVTRSGSPMDK 262 (262)
T ss_pred HhCCcHHHHHHHHHHHHHHhccccCC-CCcchHHHHHHHHHhCCccH---HHHHHHHHHHHhhcccccCC
No 264
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=52.65 E-value=74 Score=30.05 Aligned_cols=75 Identities=15% Similarity=-0.030 Sum_probs=56.2
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhH--HHHHHHHHHhcCC---CChhhHHHHHHHHHHHHHhcc
Q 003081 518 GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYH--HVLLESIMKEVPG---RLWEGKDALLYAIGSISTSCH 592 (850)
Q Consensus 518 ~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l--~~llp~L~~~L~~---r~~~gKe~vL~aL~~l~~~~~ 592 (850)
.+.+..+.+.+.+++..+...|...+..++..+|..|...+ ...+.-|.+-+.. .....|.++++.+-.....++
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 45677788888999999999999999999999998775432 1333345555533 346799999998888877655
No 265
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=52.04 E-value=1.2e+02 Score=28.32 Aligned_cols=89 Identities=11% Similarity=0.115 Sum_probs=52.8
Q ss_pred CcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHH---HHHHHHHhhh----
Q 003081 337 SPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSM---LLRLLFPVVK---- 409 (850)
Q Consensus 337 s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~---lL~~Ll~~l~---- 409 (850)
+++++-|...... +...+.+++..|.+-|++. +..+|.-|.++|-.++.+-+..|...+.+ +++.+...-.
T Consensus 19 gy~~~Eia~~t~~-s~~~~~ei~d~L~kRL~~~-~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp 96 (122)
T cd03572 19 GYLYEEIAKLTRK-SVGSCQELLEYLLKRLKRS-SPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDP 96 (122)
T ss_pred hHHHHHHHHHHHc-CHHHHHHHHHHHHHHhcCC-CCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCc
Confidence 3444444333322 3344667778888888774 66788899999988888776666555543 3333332221
Q ss_pred ---hcCcHHHHHHHHHHHHHH
Q 003081 410 ---EEKSAAAKRAFASACASV 427 (850)
Q Consensus 410 ---~D~n~~Vr~~~a~alg~L 427 (850)
++.+..||..+..++..+
T Consensus 97 ~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 97 LKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred ccCcchhHHHHHHHHHHHHHH
Confidence 234556777666665544
No 266
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=51.58 E-value=29 Score=25.16 Aligned_cols=28 Identities=14% Similarity=0.099 Sum_probs=24.5
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 003081 520 IVSLICEGIASSSWSSKRKSAKAICKLG 547 (850)
Q Consensus 520 Il~ll~~~L~d~s~~vr~~aa~alg~la 547 (850)
.++.+...+.+++..++..|+.+|+.++
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4677778888999999999999999886
No 267
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=51.07 E-value=1.3e+02 Score=29.33 Aligned_cols=131 Identities=16% Similarity=0.087 Sum_probs=66.9
Q ss_pred CcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhcC-CchhhHHHHHHHHHHHhhchhhhhhhH--hhHhHHHHHHh-
Q 003081 412 KSAAAKRAFASACASVLKYATPSQAQKLIEETAALHID-DKNSQISCAILLKSYSSVASDVLSGYH--AVIVPVIFISR- 487 (850)
Q Consensus 412 ~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~~-d~~~r~~~~~~l~al~~~~~~~f~~~~--~~vlP~l~~~~- 487 (850)
..+.+|..+.-++..+.+..+++....+-+.+..+..+ +.+....+..++.++....++.....+ +.+++.+...+
T Consensus 17 ~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~ 96 (157)
T PF11701_consen 17 QPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLAS 96 (157)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHh
Confidence 35568877777777776444433333333333333321 233455566667777666666544322 33444433222
Q ss_pred -cCCchHHHHHHHHHHHHhcCCChhhHHhh-HHHHHHHHHHhhc-CCCHH-HHHHHHHHHH
Q 003081 488 -FEDDKYVSDLFEELWEENTSGDRVTLQLY-LGEIVSLICEGIA-SSSWS-SKRKSAKAIC 544 (850)
Q Consensus 488 -~d~~~~v~~~~~~v~~~l~~~~~~~i~~y-l~eIl~ll~~~L~-d~s~~-vr~~aa~alg 544 (850)
...++.+...+.+++..-+.. ...+.+ ..+-++.+..... +++.. +|--|+-+|.
T Consensus 97 ~~~~~~~~~~~~lell~aAc~d--~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 97 RKSKDRKVQKAALELLSAACID--KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp -CTS-HHHHHHHHHHHHHHTTS--HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 244555666666776654442 223322 3445566667764 44444 6776666554
No 268
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=49.71 E-value=3.3e+02 Score=28.45 Aligned_cols=169 Identities=9% Similarity=0.035 Sum_probs=82.6
Q ss_pred hhhcCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhcCC-chhhHHHHHHHHHHHhhchhhhhhhHhhHhHH-HHH
Q 003081 408 VKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDD-KNSQISCAILLKSYSSVASDVLSGYHAVIVPV-IFI 485 (850)
Q Consensus 408 l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~~d-~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~-l~~ 485 (850)
+....++.+......++..++.... .....++.-+..+-..+ .+.+..+...+..+-+..+..| +++..++-. ...
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-~~L~~~L~~~~~r 86 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-PFLQPLLLLLILR 86 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHhh
Confidence 3355677777777777777765442 32333333333333221 1222344444445545445455 333333322 111
Q ss_pred Hh---cCCchHHHHHH--HHHHHHhcCCChhhHHhhHHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHhCcchhhhHH
Q 003081 486 SR---FEDDKYVSDLF--EELWEENTSGDRVTLQLYLGEIVSLICEGI-ASSSWSSKRKSAKAICKLGEILGESLSNYHH 559 (850)
Q Consensus 486 ~~---~d~~~~v~~~~--~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L-~d~s~~vr~~aa~alg~la~~~g~~l~~~l~ 559 (850)
.. .+.+......+ .....+++...+. +-.++++.+..++ .+.+..++..|..++..++..---++ .
T Consensus 87 ~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~----~ 158 (234)
T PF12530_consen 87 IPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDF----Y 158 (234)
T ss_pred cccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccH----H
Confidence 11 11122111111 1122333333221 5677888888888 77777888888888888885432233 3
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 003081 560 VLLESIMKEVPGRLWEGKDALLYAIGSIST 589 (850)
Q Consensus 560 ~llp~L~~~L~~r~~~gKe~vL~aL~~l~~ 589 (850)
..|..+...+.. +.+-.+++++.+++.
T Consensus 159 s~w~vl~~~l~~---~~rp~v~~~l~~l~~ 185 (234)
T PF12530_consen 159 SAWKVLQKKLSL---DYRPLVLKSLCSLFA 185 (234)
T ss_pred HHHHHHHHhcCC---ccchHHHHHHHHHHH
Confidence 455555555522 234456665656554
No 269
>KOG1810 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=49.36 E-value=3.8e+02 Score=34.66 Aligned_cols=270 Identities=13% Similarity=0.127 Sum_probs=127.0
Q ss_pred hhhhhhhHHhhHHHHHHHh--hhhhchhhhhHHHHHHhh-----cCC-CCHhHHHH---HHHHHHHhccCChHHHHHHHH
Q 003081 88 SLNSKRGAAFGFSKIAKQA--GDALKPHLRLLIPKLVRF-----QYD-PDKNVQDA---MAHIWKSLVADPKRTIDEHLD 156 (850)
Q Consensus 88 ~w~sr~gAa~gl~~I~~~~--~~~l~p~L~~lvp~L~r~-----~~D-p~~~VR~a---~~~iw~~Lv~d~~~~i~~~~~ 156 (850)
.|.+-|++..+|+.|..++ ...+.|...+-|--+|+. +.- ....+|.- .|+-|...-...+...+.+++
T Consensus 658 ~Wra~Kevs~ll~~Ii~k~~~~~~lt~~qLe~IG~lfl~~LaeikHrGAfe~~~~gf~~lC~f~~s~~~~~~~lp~~wLe 737 (1417)
T KOG1810|consen 658 AWRAVKEVSSLLETIIGKPQQDALLTPAQLEYIGSLFLLQLAEIKHRGAFESARPGFTALCSFLQSNESRFPELPELWLE 737 (1417)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHhccchhhccccHHHHHHHHHhcccccccCcHHHHH
Confidence 4999999999999999986 122333322333333211 000 11112211 243333322222234455666
Q ss_pred HHHHHHHHhhCCCChhHHHHH--HHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHH-------HHHHHHHHHHHHH
Q 003081 157 LIFDDLLIQSGSRLWRSREAS--CLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKET-------VRTAGDKLCRSVT 227 (850)
Q Consensus 157 ~Il~~Ll~~l~~~~wRVReaa--~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~-------VR~aA~~~~~~L~ 227 (850)
.+|.-+... .+|-.|.++ =..+..++..-......+-+++-+-.++++..-.-+. =|.-|....+++-
T Consensus 738 e~l~~i~~k---t~~itRRSaGlP~ll~al~~te~~~~~k~ll~r~~~~Ll~ia~~p~~~~~~~~~~p~VHA~NvmkaIf 814 (1417)
T KOG1810|consen 738 ELLEKILAK---TSGITRRSAGLPFLLTALVETELKLGMKELLPRCFCKLLKIAECPLPGEWGEGDEPRVHAMNVMKAIF 814 (1417)
T ss_pred HHHHHHHhh---cccchhccCCCCHHHHHHHHhhhcccchhhhHHHHHHHHHHhcCCCccccCCCcchhhhhHHHHHHHH
Confidence 666655443 346667632 2333344332222222333444444455544221111 1333433333331
Q ss_pred HHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHh-cC----------------cccccch
Q 003081 228 SLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKG-AG----------------IAIRPHL 290 (850)
Q Consensus 228 ~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~-~g----------------~~l~P~l 290 (850)
. .+ .-.....+++...|-.=+ +|+..+.|++|+.+......+... .| ..+-.-.
T Consensus 815 ~-------~~-~LS~~~sef~s~Al~lAi-~~fs~~~W~~RN~atlLfaALi~RvfGv~~s~~~~~~r~~~S~~~FFtky 885 (1417)
T KOG1810|consen 815 T-------SS-ILSNERSEFQSRALRLAI-EGFSHDMWAERNSATLLFAALINRVFGVIRSRLCLDHRNRLSGLEFFTKY 885 (1417)
T ss_pred c-------cc-hhhHHHHHHHHHHHHHHH-HhcCchHHhhhhhHHHHHHHHHHHHHHhhhHHhhcccccccchhhhhhcC
Confidence 1 00 001223456666665544 578878899999888777776553 12 2333445
Q ss_pred HHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhh--cCh-hhHhhHHHHHHHHHh
Q 003081 291 SDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINV--VDT-ESLDQLVPHLARLVR 367 (850)
Q Consensus 291 p~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~--ld~-~~l~~lvp~L~~~lk 367 (850)
|.+-|.++..|.+..++. . | +.-++..+ . |+.-.+..+-+. -++ -.+..++|.+.+..-
T Consensus 886 p~L~~~ll~~Less~a~~-------s---g---s~q~s~aL--~---piLl~LSrL~~~~~~~~~~~ls~F~p~l~ect~ 947 (1417)
T KOG1810|consen 886 PTLHPLLLTELESSDAQL-------S---G---SEQSSLAL--W---PILLMLSRLYPSAPRSATLGLSVFVPFLQECTC 947 (1417)
T ss_pred ccHHHHHHHHhhhhccCC-------C---c---ccCccccH--H---HHHHHHHhhcccCCccccCCchhhhHHHHHHHh
Confidence 777777776664221110 0 0 00000000 0 010011111100 011 246778999988876
Q ss_pred ccCCCchHhhHHHHHHHHHHH
Q 003081 368 SGIGLNTRVGVASFISLLVQK 388 (850)
Q Consensus 368 ~~~~~~tr~~a~~~l~~L~~~ 388 (850)
+. .+.+|..|+.++..|+..
T Consensus 948 q~-~~~vRemAs~vl~~L~~~ 967 (1417)
T KOG1810|consen 948 QS-NLKVREMASLVLLALVDA 967 (1417)
T ss_pred hh-hHHHHHHHHHHHHHHHHH
Confidence 65 378888888877776654
No 270
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=49.21 E-value=2.1e+02 Score=26.70 Aligned_cols=94 Identities=13% Similarity=0.110 Sum_probs=54.7
Q ss_pred CCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHH---HHHH
Q 003081 127 DPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRR---IWTA 203 (850)
Q Consensus 127 Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~---i~~~ 203 (850)
||.|-==..+..|.+....++ .-+..|+..|++.+++++.+|+.-|..-|.-+++..+ +.+...+.+ ++..
T Consensus 13 d~~p~pgy~~~Eia~~t~~s~-----~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~-~~f~~~~~~~~~~Ik~ 86 (122)
T cd03572 13 DDEPTPGYLYEEIAKLTRKSV-----GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN-SDFKRELQRNSAQIRE 86 (122)
T ss_pred CCCCCchHHHHHHHHHHHcCH-----HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCC-HHHHHHHHHhHHHHHH
Confidence 344433344555555444321 2467899999999999999998888888888777544 333222222 2222
Q ss_pred HHH--H-h-----ccCcHHHHHHHHHHHHHH
Q 003081 204 AFR--A-M-----DDIKETVRTAGDKLCRSV 226 (850)
Q Consensus 204 l~~--~-l-----dD~k~~VR~aA~~~~~~L 226 (850)
+.. . . ||....||.+|..++..+
T Consensus 87 ~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 87 CANYKGPPDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred HHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence 221 1 1 345566888876665543
No 271
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=48.82 E-value=1.6e+02 Score=28.15 Aligned_cols=59 Identities=17% Similarity=0.043 Sum_probs=38.2
Q ss_pred CCCCHhHHHHHHHHHHHhccCChHHH-HHHH-HHHHHHHHHhhC-CCChhHHHHHHHHHHHH
Q 003081 126 YDPDKNVQDAMAHIWKSLVADPKRTI-DEHL-DLIFDDLLIQSG-SRLWRSREASCLSLADI 184 (850)
Q Consensus 126 ~Dp~~~VR~a~~~iw~~Lv~d~~~~i-~~~~-~~Il~~Ll~~l~-~~~wRVReaa~~Al~~L 184 (850)
..+||+|+--+..++.+|+++....+ .++- ..+++.+...+. ..+.+||+-+...+..-
T Consensus 51 ~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W 112 (142)
T cd03569 51 LSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAW 112 (142)
T ss_pred cCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHH
Confidence 66999999999999999999874322 2211 334444444443 45678887776544443
No 272
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=48.82 E-value=2.2e+02 Score=26.98 Aligned_cols=68 Identities=16% Similarity=0.074 Sum_probs=41.1
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHH--HHHHHHHHHhhCCCC--h--hHHHHHHHHHHHH
Q 003081 117 LIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHL--DLIFDDLLIQSGSRL--W--RSREASCLSLADI 184 (850)
Q Consensus 117 lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~--~~Il~~Ll~~l~~~~--w--RVReaa~~Al~~L 184 (850)
.+..|-..+..++|+|+.-+..++..|+.++...+...+ ..++..|...+.++. . +||+-+..-+...
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEW 116 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHH
Confidence 344444455779999999999999999998754332222 334555554433221 1 2777666444333
No 273
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=48.48 E-value=71 Score=28.17 Aligned_cols=45 Identities=22% Similarity=0.288 Sum_probs=32.2
Q ss_pred CCCChhHHHHHHHHHHHHHccC--CchhhhHHHHHHHHHHHHHhccCcHH
Q 003081 167 GSRLWRSREASCLSLADIIQGR--KFDQVGKHLRRIWTAAFRAMDDIKET 214 (850)
Q Consensus 167 ~~~~wRVReaa~~Al~~Ll~~~--~~~~l~~~L~~i~~~l~~~ldD~k~~ 214 (850)
.+++|..|+-|+.-++.++... +.+.+.+ .+...+.+.+-|.+..
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~---Ri~~tl~k~l~d~~~~ 62 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSSSYPTLQP---RITRTLLKALLDPKKP 62 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhccccchHHH---HHHHHHHHHHcCCCCC
Confidence 3568999999999999998743 2333444 7777777877776543
No 274
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=48.20 E-value=1.6e+02 Score=35.99 Aligned_cols=81 Identities=16% Similarity=0.121 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHH
Q 003081 213 ETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSD 292 (850)
Q Consensus 213 ~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~ 292 (850)
+.-|-.+..++..+.. . .+.........+.+..+|-+|. .+.+..+-..|+.+|.-+.-.....+.||+|+
T Consensus 82 ~~~Rl~~L~Ll~~~v~----~-qp~~l~~i~~t~Lf~~LLk~L~----~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~ 152 (668)
T PF04388_consen 82 PSYRLQALTLLGHFVR----S-QPPWLYKILQTPLFKSLLKCLQ----FDTSITVVSSALLVLIMLLPHIPSSLGPHLPD 152 (668)
T ss_pred chhHHHHHHHHHHHHh----c-CCchHHHHhcChhHHHHHHHHh----hcccHHHHHHHHHHHHHHhccccchhhHHHHH
Confidence 4557777666554432 1 1111100111235566666553 24455666788888888888888889999999
Q ss_pred HHHHHHHhcc
Q 003081 293 LVSCMLESLS 302 (850)
Q Consensus 293 Lvp~LL~~Ls 302 (850)
|+..+..+++
T Consensus 153 Lf~If~Rl~~ 162 (668)
T PF04388_consen 153 LFNIFGRLLS 162 (668)
T ss_pred HHHHHHHHHH
Confidence 9999988874
No 275
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=47.87 E-value=18 Score=24.26 Aligned_cols=28 Identities=18% Similarity=0.288 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcC
Q 003081 533 WSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVP 570 (850)
Q Consensus 533 ~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~ 570 (850)
|.+|+.|+.+||.+.. +..++.|++.+.
T Consensus 1 ~~vR~~aa~aLg~~~~----------~~a~~~L~~~l~ 28 (30)
T smart00567 1 PLVRHEAAFALGQLGD----------EEAVPALIKALE 28 (30)
T ss_pred CHHHHHHHHHHHHcCC----------HhHHHHHHHHhc
Confidence 6799999999997732 345566666654
No 276
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=46.68 E-value=2.1e+02 Score=27.05 Aligned_cols=75 Identities=11% Similarity=0.063 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhh--HHHHHHHHHHhcCCCC-hh-hHHHHHHHHHHHHHhcc
Q 003081 518 GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNY--HHVLLESIMKEVPGRL-WE-GKDALLYAIGSISTSCH 592 (850)
Q Consensus 518 ~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~--l~~llp~L~~~L~~r~-~~-gKe~vL~aL~~l~~~~~ 592 (850)
.+.+..+.+.+.+++..+...|...+..++...|..|... -..++..|...+.++. -+ .|+++++.+......++
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 4567778888999999999999999999999999987654 2456777777666543 23 89999988888777654
No 277
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=46.57 E-value=2.3e+02 Score=31.79 Aligned_cols=129 Identities=16% Similarity=0.136 Sum_probs=82.2
Q ss_pred hhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccc
Q 003081 515 LYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKD 594 (850)
Q Consensus 515 ~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~ 594 (850)
+|-..+...-.......+|++ |-++|..+|... ..-...+..|.+++..++..+-...|.-+++++.+|++.
T Consensus 8 ~~e~~v~KAT~e~nT~enW~~-------IlDvCD~v~~~~-~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~ 79 (462)
T KOG2199|consen 8 PFEQDVEKATDEKNTSENWSL-------ILDVCDKVGSDP-DGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKR 79 (462)
T ss_pred hHHHHHHHhcCcccccccHHH-------HHHHHHhhcCCC-cccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchH
Confidence 333444444444456678875 557777776654 345678889999999999999888999999999999976
Q ss_pred cccC--CCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCchhHHhHHHHHHhhcc
Q 003081 595 ISAE--DPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCG 654 (850)
Q Consensus 595 l~~~--~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~~~~~~~iv~~~l~~~~~ 654 (850)
+..+ -..|...+. .|+.. +..+.++..--..+-.....|..+.-...+.-+..++..
T Consensus 80 ~r~EVsSr~F~~el~-al~~~--~~h~kV~~k~~~lv~eWsee~K~Dp~lsLi~~l~~klk~ 138 (462)
T KOG2199|consen 80 FRLEVSSRDFTTELR-ALIES--KAHPKVCEKMRDLVKEWSEEFKKDPSLSLISALYKKLKE 138 (462)
T ss_pred HHHHHhhhhHHHHHH-HHHhh--cccHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 6421 112322222 22221 345677777767777778888766544444455555554
No 278
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=46.43 E-value=67 Score=29.87 Aligned_cols=69 Identities=9% Similarity=0.059 Sum_probs=41.5
Q ss_pred HHHHHHHHhh-CCCChhHHHHHHHHHHHHHccCCch-hhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Q 003081 157 LIFDDLLIQS-GSRLWRSREASCLSLADIIQGRKFD-QVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSV 226 (850)
Q Consensus 157 ~Il~~Ll~~l-~~~~wRVReaa~~Al~~Ll~~~~~~-~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L 226 (850)
.+++.|..-+ .+.+..+-.-||.-+|.+++..|.- .+... ...=..++++|.+..+.||..|..++..+
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~-lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEK-LGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHH-HSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHh-cChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3455555555 3345667778899999998854321 11111 12234567888999999999987555443
No 279
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=45.92 E-value=1.4e+02 Score=27.19 Aligned_cols=72 Identities=13% Similarity=0.013 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHH--HHHHHHHH----hcCCC--ChhhHHHHHHHHHH
Q 003081 515 LYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHH--VLLESIMK----EVPGR--LWEGKDALLYAIGS 586 (850)
Q Consensus 515 ~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~--~llp~L~~----~L~~r--~~~gKe~vL~aL~~ 586 (850)
....+++..+.+.+.+++|.+...|...+..++...|+.|..++. ..+.-+.. ...++ .-..|+++++.+..
T Consensus 33 ~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 33 VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 345678899999999999999999999999999999988765431 11222221 22332 24567777765544
No 280
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=45.21 E-value=1.7e+02 Score=28.68 Aligned_cols=72 Identities=14% Similarity=0.151 Sum_probs=56.7
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHh-cCCC--ChhhHHHHHHHHHHHHH
Q 003081 518 GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKE-VPGR--LWEGKDALLYAIGSIST 589 (850)
Q Consensus 518 ~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~-L~~r--~~~gKe~vL~aL~~l~~ 589 (850)
+.+.+.+.+.+.+++..+-..+...+..+....+..+...+..+++.+... +..+ ++..|+.+|+++..++.
T Consensus 72 ~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 72 DDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 456666777766677888888999999999998888888888888887773 4433 34589999999999985
No 281
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.16 E-value=9.4e+02 Score=32.19 Aligned_cols=156 Identities=6% Similarity=-0.034 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhhcCCc--hhhHHHHHHHHHHHhhchh-hhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCCh
Q 003081 434 SQAQKLIEETAALHIDDK--NSQISCAILLKSYSSVASD-VLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDR 510 (850)
Q Consensus 434 ~~v~~li~~l~~~~~~d~--~~r~~~~~~l~al~~~~~~-~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~ 510 (850)
.....++..+......+. ..|.++...+..+.-...- .+....+.+--.++...+|.+.+||+.+.+++..+..+..
T Consensus 1522 ~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~ 1601 (1710)
T KOG1851|consen 1522 HLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSK 1601 (1710)
T ss_pred hhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhccc
Confidence 334445555554222222 3455555555554322111 2345556666666666778777899999999988877643
Q ss_pred hhHHhhHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Q 003081 511 VTLQLYLGEIVSLICEGIAS--SSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSIS 588 (850)
Q Consensus 511 ~~i~~yl~eIl~ll~~~L~d--~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~ 588 (850)
.. ..+...........+ .+....+.|..++|+++..++..+...+|..+-.|-.-..++ -..|..+=+++..+-
T Consensus 1602 ~~---~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFr 1677 (1710)
T KOG1851|consen 1602 FQ---FVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFR 1677 (1710)
T ss_pred cc---cchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHH
Confidence 22 222233333333333 345677889999999999987766554444443333222222 345777777777665
Q ss_pred Hhccc
Q 003081 589 TSCHK 593 (850)
Q Consensus 589 ~~~~~ 593 (850)
....+
T Consensus 1678 rth~D 1682 (1710)
T KOG1851|consen 1678 RTHAD 1682 (1710)
T ss_pred HHhhh
Confidence 54433
No 282
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=43.86 E-value=1.7e+02 Score=31.00 Aligned_cols=117 Identities=17% Similarity=0.152 Sum_probs=69.2
Q ss_pred hhHH----hhHHHHHHHhh----hhhchhhhhHHHHHHhhcCCC-C---HhHHHHH---HHHHHHhccCChHHHHHHHHH
Q 003081 93 RGAA----FGFSKIAKQAG----DALKPHLRLLIPKLVRFQYDP-D---KNVQDAM---AHIWKSLVADPKRTIDEHLDL 157 (850)
Q Consensus 93 ~gAa----~gl~~I~~~~~----~~l~p~L~~lvp~L~r~~~Dp-~---~~VR~a~---~~iw~~Lv~d~~~~i~~~~~~ 157 (850)
|||+ -||..+++.+- ..+.....+.+-.++.....+ . ...||++ .-|-..|..+++.. ..-++.
T Consensus 111 rGAfe~~~~~f~~lc~~l~~~~~~~l~~LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~-~~ll~~ 189 (255)
T PF10350_consen 111 RGAFESVYPGFTALCRRLWSSNNPELSELPEEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNS-RPLLHR 189 (255)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcc-hhHHHH
Confidence 3555 67888887764 222222234444444444555 2 2689986 22333344444321 256677
Q ss_pred HHHHHHHhhCCCCh--------hHHHHHHHHHHHHHccCC-chhhhHHHHHHHHHHHHHhcc
Q 003081 158 IFDDLLIQSGSRLW--------RSREASCLSLADIIQGRK-FDQVGKHLRRIWTAAFRAMDD 210 (850)
Q Consensus 158 Il~~Ll~~l~~~~w--------RVReaa~~Al~~Ll~~~~-~~~l~~~L~~i~~~l~~~ldD 210 (850)
.|+.|++-...+.- .-|.+|..-|..|+.... .+.+.+|+.+.+...++.+++
T Consensus 190 ~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~~~l~lai~~f~s 251 (255)
T PF10350_consen 190 TMKSLLEIAKSPSTQHEDEKSDLPQVHALNILRAIFRDSKLSEDVSPYIEDALILAIKGFSS 251 (255)
T ss_pred HHHHHHHHhcCCcccccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCC
Confidence 77777766654332 457788877877776543 346788888888888777654
No 283
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=43.86 E-value=61 Score=35.48 Aligned_cols=119 Identities=12% Similarity=0.016 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcc---hhhhH----HHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 003081 515 LYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGES---LSNYH----HVLLESIMKEVPGRLWEGKDALLYAIGSI 587 (850)
Q Consensus 515 ~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~---l~~~l----~~llp~L~~~L~~r~~~gKe~vL~aL~~l 587 (850)
.|..-++.++... +++.++.+.....++++...-+.. |..+- +..+..+.+.+...++..++.....++.+
T Consensus 55 ~~~~~~l~lL~~~--~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~L 132 (312)
T PF03224_consen 55 QYASLFLNLLNKL--SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSL 132 (312)
T ss_dssp -------HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHc--cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4555555555554 556677777777888877654432 11111 12556666666666888999999999988
Q ss_pred HHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 003081 588 STSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKA 635 (850)
Q Consensus 588 ~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~ 635 (850)
+...+..........++.++..+....+..+..+...|+.||+.+++.
T Consensus 133 l~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~ 180 (312)
T PF03224_consen 133 LSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS 180 (312)
T ss_dssp HTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS
T ss_pred HHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc
Confidence 865443211000012333333444434345667889999999998864
No 284
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=43.63 E-value=2.2e+02 Score=27.18 Aligned_cols=111 Identities=12% Similarity=0.143 Sum_probs=69.1
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccC--CCCchH
Q 003081 527 GIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAE--DPTTPF 604 (850)
Q Consensus 527 ~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~--~~~~~~ 604 (850)
.+.+++|..=- -+.+++..-+. .-...+..|.+.++.+....-...|..|-.++.+|+..+..+ ...|+.
T Consensus 13 ~l~~~dw~~il----eicD~In~~~~----~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~ 84 (139)
T cd03567 13 SNREEDWEAIQ----AFCEQINKEPE----GPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLN 84 (139)
T ss_pred cCCCCCHHHHH----HHHHHHHcCCc----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHH
Confidence 35567776422 34444432211 124567778888888887777778888888899998755321 123455
Q ss_pred HHHHHHHHHH--hhcCHHHHHHHHHHHHHHHHHcCC-chhHHhH
Q 003081 605 AIVDMVSSAC--RKKIKKYREAAFSCLEQVIKAFRD-PKFFNII 645 (850)
Q Consensus 605 ~i~~~l~~e~--~r~~~~~R~~Al~~Lg~l~~~~~~-~~~~~iv 645 (850)
.+++.+-.-- +.....+|...+..+.....+|+. +.+.+.+
T Consensus 85 el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~~~~~Y 128 (139)
T cd03567 85 ELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELPHEPKIKEAY 128 (139)
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence 5555442110 135689999999999999999974 3444433
No 285
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=43.60 E-value=5.3e+02 Score=29.12 Aligned_cols=54 Identities=9% Similarity=0.104 Sum_probs=38.6
Q ss_pred CchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhh
Q 003081 372 LNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKY 430 (850)
Q Consensus 372 ~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~ 430 (850)
...|.-++++|+.+..+++ ..++.-+.+-+..+ +|....||+.+...+-.+++.
T Consensus 38 ~k~k~lasq~ip~~fk~fp----~la~~a~da~~d~~-ed~d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 38 SKEKRLASQFIPRFFKHFP----SLADEAIDAQLDLC-EDDDVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred hHHHHHHHHHHHHHHhhCc----hhhhHHHHhhhccc-cccchhhHHHHHhccchhccC
Confidence 4456778888877665544 44566677777777 788889999988777666654
No 286
>cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4). Thus, RASA3 may function as an IP4 receptor. The members of GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. Purified RASA3 stimulates GAP activity on Ras with about a five-fold lower potency than p120RasGAP, but shows no GAP-stimulating activity at all against Rac or Rab3A.
Probab=43.55 E-value=2.4e+02 Score=30.85 Aligned_cols=31 Identities=16% Similarity=0.374 Sum_probs=22.7
Q ss_pred HHHHHHHHHcCCchhHHhHHHHHHhhccccc
Q 003081 627 SCLEQVIKAFRDPKFFNIIFPLLFEMCGSTA 657 (850)
Q Consensus 627 ~~Lg~l~~~~~~~~~~~iv~~~l~~~~~~~~ 657 (850)
+++..+.+..+..-+.+++.|++.++.+++.
T Consensus 81 K~m~~y~k~~G~~YL~~tL~pvI~~i~~~~~ 111 (310)
T cd05134 81 KCIDETMKLAGMHYLQVTLKPIIDEICQEHK 111 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4566666666665678899999999987543
No 287
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=43.25 E-value=1.3e+03 Score=33.70 Aligned_cols=87 Identities=14% Similarity=0.134 Sum_probs=57.7
Q ss_pred HHHHHHHHHhc---ccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHH-----hhc---
Q 003081 380 SFISLLVQKIG---MDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAA-----LHI--- 448 (850)
Q Consensus 380 ~~l~~L~~~~~---~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~-----~~~--- 448 (850)
.....||...+ ..+.||++.+|..+..++. -++.+....-+.+-.++....++.+.+++++..+ ++.
T Consensus 699 dLfvELclTvPvRLS~Llpylp~LM~PLv~aLk--gs~~lvsQgLRtlelcvDnltPefL~~~mepv~~~lmqaLw~~l~ 776 (3550)
T KOG0889|consen 699 DLFVELCLTLPVRLSSLLPYLPLLMKPLVFALK--GSPELVSQGLRTLELCVDNLTPEFLDPIMEPVRDDLMQALWSHLR 776 (3550)
T ss_pred HHHHHHHHhhhHHHHHhhhhhhhhhhHHHHHhc--CCHHHHHHHHhHHHHHHhcCChHhhhHHHHHHHHHHHHHHHHhcc
Confidence 33444444333 3567999999999999993 5677777777888888887777766555554332 221
Q ss_pred C--CchhhHHHHHHHHHHHhhc
Q 003081 449 D--DKNSQISCAILLKSYSSVA 468 (850)
Q Consensus 449 ~--d~~~r~~~~~~l~al~~~~ 468 (850)
. ++.+-..|..+++.+...+
T Consensus 777 ~~~~~s~s~~a~rILGKlgG~N 798 (3550)
T KOG0889|consen 777 PVPNYSYSHRALRILGKLGGRN 798 (3550)
T ss_pred CCCCchHHHHHHHHHHhhcCcc
Confidence 2 3556677888888886554
No 288
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=42.04 E-value=8.7e+02 Score=31.19 Aligned_cols=169 Identities=16% Similarity=0.221 Sum_probs=80.8
Q ss_pred HhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhh--hc-CcHHHHHHHHHHHHHHhhhCCHHHHHHHH---HHHHHhhc
Q 003081 375 RVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVK--EE-KSAAAKRAFASACASVLKYATPSQAQKLI---EETAALHI 448 (850)
Q Consensus 375 r~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~--~D-~n~~Vr~~~a~alg~L~~~~~~~~v~~li---~~l~~~~~ 448 (850)
|..-+.++..|+.+++..-.+|-+.++..++++|. .| +-..+|-.+..++-.+....- ....++. ......|.
T Consensus 172 r~~~~~fl~~lV~q~q~~s~l~d~~lmd~~is~LtamSdSqvR~fRhTaTl~~mklmt~Lv-~va~~Ls~~~~~tskQle 250 (1048)
T KOG2011|consen 172 RENFCEFLPTLVSQCQYGSCLFDSFLMDDLISWLTAMSDSQVRAFRHTATLAAMKLMTALV-SVALNLSSHNDKTSKQLE 250 (1048)
T ss_pred HHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHH
Confidence 34456677777777776455676667776666663 23 233445444433333221110 0011111 11111111
Q ss_pred -CC---chh--hHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhc-CCchHHHHHH---HHHHHHhcCCChhhHHhhHH
Q 003081 449 -DD---KNS--QISCAILLKSYSSVASDVLSGYHAVIVPVIFISRF-EDDKYVSDLF---EELWEENTSGDRVTLQLYLG 518 (850)
Q Consensus 449 -~d---~~~--r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~-d~~~~v~~~~---~~v~~~l~~~~~~~i~~yl~ 518 (850)
+. ... |............-..+....+...++--+|.-++ |-++++|... .++|-...|+.- + -.
T Consensus 251 aEr~k~r~~rarle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~F--l---~d 325 (1048)
T KOG2011|consen 251 AERNKSRGNRARLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIF--L---SD 325 (1048)
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHH--h---cc
Confidence 00 001 12221111222222233334444445544444443 5566666443 366877666420 0 12
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 003081 519 EIVSLICEGIASSSWSSKRKSAKAICKLGEI 549 (850)
Q Consensus 519 eIl~ll~~~L~d~s~~vr~~aa~alg~la~~ 549 (850)
.-+.-+.+.|.|.+-+||..+.++|--|...
T Consensus 326 sYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~ 356 (1048)
T KOG2011|consen 326 SYLKYIGWTLSDKNGTVRLRCLKALIKLYEK 356 (1048)
T ss_pred hHHHHhcceeecCccHHHHHHHHHHHHHHhc
Confidence 2345566788999999999988888877765
No 289
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=41.55 E-value=1.7e+02 Score=29.47 Aligned_cols=67 Identities=10% Similarity=0.093 Sum_probs=49.1
Q ss_pred hHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHc
Q 003081 116 LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQ 186 (850)
Q Consensus 116 ~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~ 186 (850)
+.++.++....++++.||.++.++...+..-- -+ |=...+|.|....+|++..+|.-|-..+.++.+
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qG-Lv---nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQG-LV---NPKQCVPTLIALETSPNPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC-CC---ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHH
Confidence 34566666789999999999998777765210 00 113467888888899999999999887777754
No 290
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=41.51 E-value=1e+03 Score=31.97 Aligned_cols=167 Identities=14% Similarity=0.111 Sum_probs=96.3
Q ss_pred HHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCC-CHHHHHHHH
Q 003081 462 KSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASS-SWSSKRKSA 540 (850)
Q Consensus 462 ~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~-s~~vr~~aa 540 (850)
......+...++.|++.++-+.-..++..++.+++.....|..+-..... -|-++++..+...+.+. +.++ .+|.
T Consensus 419 ~~~f~~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds---~~qqeVv~~Lvthi~sg~~~ev-~~aL 494 (1426)
T PF14631_consen 419 DQTFKGHSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDS---YCQQEVVGALVTHIGSGNSQEV-DAAL 494 (1426)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-H---HHHHHHHHHHHHHHHH--HHHH-HHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccc---hhHHHHHHHHHHHHcCCcHHHH-HHHH
Confidence 33344445667777777777765566777888888777777665444321 24577887777765444 4455 4678
Q ss_pred HHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHH
Q 003081 541 KAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKK 620 (850)
Q Consensus 541 ~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~ 620 (850)
..|..++...+..+.+|-..|.++| +.+..=+..-=..++.-|..++-.-. .......+.+-=++.+++...+..
T Consensus 495 ~vL~~L~~~~~~~l~~fa~~l~giL-D~l~~Ls~~qiR~lf~il~~La~~~~----~~~s~i~del~ivIRKQLss~~~~ 569 (1426)
T PF14631_consen 495 DVLCELAEKNPSELQPFATFLKGIL-DYLDNLSLQQIRKLFDILCTLAFSDS----SSSSSIQDELHIVIRKQLSSSNPK 569 (1426)
T ss_dssp HHHHHHHHH-HHHHHHTHHHHHGGG-GGGGG--HHHHHHHHHHHHHHHHHHS----S---HHHHHHHHHHHHHHT-SSHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHhcCCc----ccchhhHHHHHHHHHHhhcCCcHH
Confidence 8888898877777776644444433 33332222223345666666653221 111223455555677788888888
Q ss_pred HHHHHHHHHHHHHHHcC
Q 003081 621 YREAAFSCLEQVIKAFR 637 (850)
Q Consensus 621 ~R~~Al~~Lg~l~~~~~ 637 (850)
|++..+-..-.+++.+.
T Consensus 570 ~K~~GIIGav~~i~~la 586 (1426)
T PF14631_consen 570 YKRIGIIGAVMMIKHLA 586 (1426)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 88777655555555543
No 291
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=40.77 E-value=2.9e+02 Score=25.33 Aligned_cols=70 Identities=20% Similarity=0.231 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHhCcchhh-hHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 003081 516 YLGEIVSLICEGIA-SSSWSSKRKSAKAICKLGEILGESLSN-YHHVLLESIMKEVPGRLWEGKDALLYAIGSIST 589 (850)
Q Consensus 516 yl~eIl~ll~~~L~-d~s~~vr~~aa~alg~la~~~g~~l~~-~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~ 589 (850)
+++.+++.+...+. +...+.|-++.-.++.++.+.. +.+ .+..++..+.+.....+ .....+.++..+++
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~--L~~~~l~~l~~~i~~~~~~~~--~~~~~l~~L~~l~q 74 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP--LSDEVLNALMESILKNWTQET--VQRQALICLIVLCQ 74 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC--CcHHHHHHHHHHHHhccccch--hHHHHHHHHHHHHH
Confidence 67788999999988 7788999999999999998753 222 23444444444433222 22445666777764
No 292
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=40.28 E-value=3.3e+02 Score=26.01 Aligned_cols=75 Identities=16% Similarity=0.091 Sum_probs=55.1
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhH--HHHHHHHHHhcC----C--CChhhHHHHHHHHHHHHH
Q 003081 518 GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYH--HVLLESIMKEVP----G--RLWEGKDALLYAIGSIST 589 (850)
Q Consensus 518 ~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l--~~llp~L~~~L~----~--r~~~gKe~vL~aL~~l~~ 589 (850)
.+-+..+.+.+.+++..+.-.|...+..+++.+|..|...+ ...+..|.+.++ + ....+|+++++.+-....
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 34566777888999999999999999999999999876532 344445555553 2 236789999988888776
Q ss_pred hcc
Q 003081 590 SCH 592 (850)
Q Consensus 590 ~~~ 592 (850)
.++
T Consensus 117 ~f~ 119 (139)
T cd03567 117 ELP 119 (139)
T ss_pred Hhc
Confidence 554
No 293
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=40.02 E-value=55 Score=28.83 Aligned_cols=56 Identities=5% Similarity=0.076 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHh
Q 003081 534 SSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTS 590 (850)
Q Consensus 534 ~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~ 590 (850)
..|+.+..+|+.++.+.+..+.+++|.++..|.....+ ....+..+=++|+.|-..
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrt 59 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRT 59 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHh
Confidence 35788889999999999989888999998888777764 556777777888877653
No 294
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=39.33 E-value=2.6e+02 Score=26.39 Aligned_cols=60 Identities=5% Similarity=-0.001 Sum_probs=38.7
Q ss_pred cCCCCHhHHHHHHHHHHHhccCChHHHHHHH--HHHHHHHHHhhCCCC--hhHHHHHHHHHHHH
Q 003081 125 QYDPDKNVQDAMAHIWKSLVADPKRTIDEHL--DLIFDDLLIQSGSRL--WRSREASCLSLADI 184 (850)
Q Consensus 125 ~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~--~~Il~~Ll~~l~~~~--wRVReaa~~Al~~L 184 (850)
+.++||+|+.-+..++..+++++...+...+ ...+..|...+.++. ..||+-+...+...
T Consensus 46 l~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W 109 (133)
T smart00288 46 LNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEW 109 (133)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 3679999999999999999998754332222 345666665554432 23777666544443
No 295
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=37.23 E-value=6.4e+02 Score=28.31 Aligned_cols=173 Identities=13% Similarity=0.008 Sum_probs=98.1
Q ss_pred HHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhc------------------CCChhhHHhhHHH
Q 003081 458 AILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENT------------------SGDRVTLQLYLGE 519 (850)
Q Consensus 458 ~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~------------------~~~~~~i~~yl~e 519 (850)
..++..+...+|+.+..+...-+|.++..+.+..+.+|..+..+..+.. ...... .|.+.
T Consensus 155 L~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~--~~~~~ 232 (372)
T PF12231_consen 155 LNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG--KLIQL 232 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc--cHHHH
Confidence 3455666777788888888888898888777766666655433322221 000001 23333
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcc-h--hhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccc
Q 003081 520 IVSLICEGIASSSWSSKRKSAKAICKLGEILGES-L--SNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDIS 596 (850)
Q Consensus 520 Il~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~-l--~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~ 596 (850)
+.+.+...+.++. --..+...=+.+..-+|.. + .++++..+.+...+++..+...|...+.|.-.++-.......
T Consensus 233 ~~~~L~~mi~~~~--~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~ 310 (372)
T PF12231_consen 233 YCERLKEMIKSKD--EYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNEL 310 (372)
T ss_pred HHHHHHHHHhCcC--CcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCcc
Confidence 4444444444421 0112223333333334432 2 346888888888899888888999999999888763322111
Q ss_pred cCCCCchHHHHHHHHHHHhhc-CH----HHHHHHHHHHHHHHHH
Q 003081 597 AEDPTTPFAIVDMVSSACRKK-IK----KYREAAFSCLEQVIKA 635 (850)
Q Consensus 597 ~~~~~~~~~i~~~l~~e~~r~-~~----~~R~~Al~~Lg~l~~~ 635 (850)
..+..+..+...+....+++ .. .+|.+++.+++.++-.
T Consensus 311 -~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~ 353 (372)
T PF12231_consen 311 -TSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYY 353 (372)
T ss_pred -ccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchHHH
Confidence 01122333334444444442 23 7899999888876643
No 296
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=34.70 E-value=4.4e+02 Score=25.60 Aligned_cols=108 Identities=17% Similarity=0.245 Sum_probs=59.5
Q ss_pred ccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHH
Q 003081 285 AIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLAR 364 (850)
Q Consensus 285 ~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~ 364 (850)
.+..+.+.+...+++++.--. .+.. ....+.++.+-.+ +.++.-.++--+.+..+..+.-++.+
T Consensus 3 ~i~~~~~~l~~~~l~ald~R~--------~~~~--~~~~~~v~~vE~~------v~~~~~~lV~KLnE~~FRPlF~~l~d 66 (153)
T PF08146_consen 3 SISKNSPQLFDFFLQALDFRR--------QQRS--KFDLEDVDEVESS------VISAFVSLVLKLNEATFRPLFLKLVD 66 (153)
T ss_pred HHHHhHHHHHHHHHHHHHHHH--------Hhcc--ccCHHHHHHHHHH------HHHHHHHHHHHcccchhHhHHHHHHH
Confidence 345677788888888775211 1100 1112333332211 12333333434445555555555555
Q ss_pred HHhc------cCCCchH-hhHHHHHHHHHHHhcccccchHHHHHHHHHHhh
Q 003081 365 LVRS------GIGLNTR-VGVASFISLLVQKIGMDIKPYTSMLLRLLFPVV 408 (850)
Q Consensus 365 ~lk~------~~~~~tr-~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l 408 (850)
.-.. ..+...| +.--+++..+..++..-+.||.+.++......|
T Consensus 67 WA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~L 117 (153)
T PF08146_consen 67 WATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVDLL 117 (153)
T ss_pred HHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 1122233 245677777888888899999999999988888
No 297
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=34.47 E-value=9.2e+02 Score=29.26 Aligned_cols=232 Identities=16% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 003081 103 AKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLA 182 (850)
Q Consensus 103 ~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~ 182 (850)
++.-+.+++.-|.-+|.++ +||+|..++++.+..+..+..+. .-..-.+.=+++|-..... +.
T Consensus 39 lSEED~~lk~dLellVerv----qdpd~~Lq~~aLe~lr~~irsSt-SSmtsvpkPlKFLrphy~~------------Lk 101 (878)
T KOG2005|consen 39 LSEEDLQLKGDLELLVERV----QDPDPDLQKAALESLREEIRSST-SSMTSVPKPLKFLRPHYGV------------LK 101 (878)
T ss_pred ccHHHHHhhhhHHHHHHHh----cCCChHHHHHHHHHHHHHHHhcc-cccccCCchhhhhccchhH------------HH
Q ss_pred HHHccCCchhhhHHHHHHHHHHHHHhccCcHH-------------------HHHHHHHHHHHHHHHHHHhhhcccCcchh
Q 003081 183 DIIQGRKFDQVGKHLRRIWTAAFRAMDDIKET-------------------VRTAGDKLCRSVTSLTIRLCDVTLTEISD 243 (850)
Q Consensus 183 ~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~-------------------VR~aA~~~~~~L~~~~~r~~~~~~~~~~~ 243 (850)
++...........++.+|+..+--.++..+.. ||.-|...+....+. +....+-.+
T Consensus 102 ~i~~~~~~~n~Kk~laDIlSvLamt~se~~~~l~YRl~G~~~d~~~WGHeYVRhLageIaee~~~~-----~~e~~~~~d 176 (878)
T KOG2005|consen 102 EIYESMADSNLKKWLADILSVLAMTMSERGEHLAYRLLGSIIDLGSWGHEYVRHLAGEIAEEYNNR-----EMEAPSKAD 176 (878)
T ss_pred HHHHhccCchhHhHHHHHHHHHheeecccchheeeeeccccCChhhhHHHHHHHHHHHHHHHHhhc-----cccccchHH
Q ss_pred HHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccch
Q 003081 244 ARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQT 323 (850)
Q Consensus 244 ~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~ 323 (850)
.......++||.+ + .+.|. -|++.|.++
T Consensus 177 l~~l~~~iV~f~m-k----HNAE~--eAiDlL~Ev--------------------------------------------- 204 (878)
T KOG2005|consen 177 LLDLVQEIVPFHM-K----HNAEF--EAIDLLMEV--------------------------------------------- 204 (878)
T ss_pred HHHHHHHHHHHHH-h----ccchh--HHHHHHHHh---------------------------------------------
Q ss_pred hhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHH---
Q 003081 324 EKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSML--- 400 (850)
Q Consensus 324 d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~l--- 400 (850)
+.++.+++++|..+...+.-++.....- +..|.-++..++.-.+-.+++..-......+
T Consensus 205 -----------------e~id~l~~~Vd~~n~~RvclYl~sc~~~-lP~Pdd~~ll~~a~~IYlKf~~~~~al~~ai~l~ 266 (878)
T KOG2005|consen 205 -----------------EGIDLLLDYVDEHNYQRVCLYLTSCVPL-LPGPDDVALLRTALKIYLKFNEYPRALVGAIRLD 266 (878)
T ss_pred -----------------hhHhHHHHHhhhhhHHHHHHHHHHHhhc-CCCchhhHHHHHHHHHHHHHHHhHHHHHHHHhcC
Q ss_pred -HHHHHHhhhhcCcHHHHHHHHHHHHH
Q 003081 401 -LRLLFPVVKEEKSAAAKRAFASACAS 426 (850)
Q Consensus 401 -L~~Ll~~l~~D~n~~Vr~~~a~alg~ 426 (850)
++.....+..-..+..+++++.-+++
T Consensus 267 ~~~~v~~vf~s~~D~~~kKQ~~ymLaR 293 (878)
T KOG2005|consen 267 DMKEVKEVFTSCTDPLLKKQMAYMLAR 293 (878)
T ss_pred cHHHHHHHHHhccCHHHHHHHHHHHHh
No 298
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.43 E-value=2e+02 Score=37.77 Aligned_cols=70 Identities=17% Similarity=0.117 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 003081 155 LDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRS 225 (850)
Q Consensus 155 ~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~ 225 (850)
|.++...++....+...+.|..|...+..+...- .+.+..++++++|.+-.+|.|.+++|-..+..+.+.
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~l-ge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q 1608 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKL-GENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQ 1608 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh-cchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 7777888887777777889998888777666533 367889999999999999999999887665544443
No 299
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=33.05 E-value=1.6e+02 Score=25.58 Aligned_cols=66 Identities=14% Similarity=0.051 Sum_probs=49.0
Q ss_pred HhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 003081 479 IVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAIC 544 (850)
Q Consensus 479 vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg 544 (850)
+-|+..+..+..+.++|+...+....++.+.+..++.=.+.|+.++.....+.+.++-..|..++.
T Consensus 19 L~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 19 LKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 346665555667888999888888887776666677667888888888888877777777766654
No 300
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=32.54 E-value=1.2e+02 Score=28.24 Aligned_cols=70 Identities=10% Similarity=0.087 Sum_probs=40.7
Q ss_pred hHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHH--HHHHHHHhhhhcCcHHHHHHHHHHHHHHh
Q 003081 357 QLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSM--LLRLLFPVVKEEKSAAAKRAFASACASVL 428 (850)
Q Consensus 357 ~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~--lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~ 428 (850)
+++-.|.+.+..+.+..+-..||.=|+.++..++.. +..+++ .=..++..+ +++++.||..+..|+..++
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g-r~ii~~lg~K~~vM~Lm-~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG-RNIIEKLGAKERVMELM-NHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG-HHHHHHHSHHHHHHHHT-S-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhH-HHHHHhcChHHHHHHHh-cCCCHHHHHHHHHHHHHHH
Confidence 455666666644322223345677778888776543 222322 223455666 7899999999988887765
No 301
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=31.62 E-value=5.1e+02 Score=25.46 Aligned_cols=74 Identities=9% Similarity=0.117 Sum_probs=47.7
Q ss_pred HHHHHHhhcCCC--CHhHHHHHHHHHHHhccCChHHHHHHH-HHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCc
Q 003081 117 LIPKLVRFQYDP--DKNVQDAMAHIWKSLVADPKRTIDEHL-DLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKF 190 (850)
Q Consensus 117 lvp~L~r~~~Dp--~~~VR~a~~~iw~~Lv~d~~~~i~~~~-~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~ 190 (850)
.|.|+-.|..-+ ++.|.+.+..|...+|.+++..-.... +--++.|+..+.+.+.+++..+..-+..|+.+.+.
T Consensus 59 FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 59 FIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 344444443433 578999999999999977653222221 33566677777777788888887777777665543
No 302
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=29.72 E-value=4.8e+02 Score=28.34 Aligned_cols=78 Identities=9% Similarity=0.076 Sum_probs=54.9
Q ss_pred hhcCCCCCchHHHHHHHHHHHHHHHHhhcccCCCCCCCCcChhHHHHHHHHhhCchhhhhhhhhhhhhHHHHHHHHHHHH
Q 003081 716 ISLSPGFPWTVKMSAFSSIKELCSRLQKTLDDSAGTSPHAGISSLIQELFHTVSPKVVECISTVKIAQVHISASECLLEI 795 (850)
Q Consensus 716 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~a~~~~~~~ 795 (850)
...+-+....-..++.+++..+.+++.... ++.....+...++...+...+..-.+......+++++.+.+++.+.+
T Consensus 175 ~~a~~ey~~~l~~~~~~a~~~~~~~l~~~~---~~g~~~~s~re~~d~Wi~~ae~~~~~~~~S~ef~~~~g~~~~a~m~~ 251 (293)
T PF09712_consen 175 QRASQEYQAQLSEAWMKAFERMMEKLQERA---EEGEQIKSWREFYDIWIDAAEEAYEELFRSEEFAQAYGQLVNALMDL 251 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccCCCCcCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 444445556666778888888888886542 12122346677788777777766677766778999999999999887
Q ss_pred H
Q 003081 796 C 796 (850)
Q Consensus 796 ~ 796 (850)
-
T Consensus 252 r 252 (293)
T PF09712_consen 252 R 252 (293)
T ss_pred H
Confidence 4
No 303
>PF05536 Neurochondrin: Neurochondrin
Probab=29.65 E-value=1e+03 Score=28.34 Aligned_cols=174 Identities=15% Similarity=0.121 Sum_probs=96.0
Q ss_pred CCCCccchHHHH--HHHhhhcCC------chH---HHHHHHHhccchhhhhhhhHHhhHHHHHHHh-h-h-hhchhhhhH
Q 003081 52 LGGGKLSTYKEL--CNLANEMGQ------PDL---IYKFMDLANYQVSLNSKRGAAFGFSKIAKQA-G-D-ALKPHLRLL 117 (850)
Q Consensus 52 ~~g~~~styk~l--~~lA~~~g~------p~l---v~~fm~la~~~~~w~sr~gAa~gl~~I~~~~-~-~-~l~p~L~~l 117 (850)
|+|+.-..|.+| --|+.-..+ |++ |+.|+....+...-..-.=+...|..|++.. | + .++ ...
T Consensus 65 ~~~~~~~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~---~g~ 141 (543)
T PF05536_consen 65 PSDCPPEEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLE---SGA 141 (543)
T ss_pred CCCCCHHHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHh---cCC
Confidence 566666677643 223333334 444 4444444433322111122334455555322 1 1 222 134
Q ss_pred HHHHHhhcCCCCHhHHHHHHHHHHHhccCCh-HHH---HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCch--
Q 003081 118 IPKLVRFQYDPDKNVQDAMAHIWKSLVADPK-RTI---DEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFD-- 191 (850)
Q Consensus 118 vp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~-~~i---~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~-- 191 (850)
+|.|.....+ ++...+.+..+|-.++.... ... ...+..+++.+-..+...+-+.+--.|.=++.++...+..
T Consensus 142 v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~ 220 (543)
T PF05536_consen 142 VPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPL 220 (543)
T ss_pred HHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCcccc
Confidence 5555444444 78888999999999886543 122 3345677777766666555566777788899999866421
Q ss_pred ---hhhHHHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHH
Q 003081 192 ---QVGKHLRRIWTAAFRAMD-DIKETVRTAGDKLCRSVTSL 229 (850)
Q Consensus 192 ---~l~~~L~~i~~~l~~~ld-D~k~~VR~aA~~~~~~L~~~ 229 (850)
.-...+..++..+...+. -+.+.=|.++..++..+...
T Consensus 221 ~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 221 ESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDL 262 (543)
T ss_pred ccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 223345555555555554 34566688888777776543
No 304
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=28.99 E-value=74 Score=22.39 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=21.7
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 003081 520 IVSLICEGIASSSWSSKRKSAKAICKLG 547 (850)
Q Consensus 520 Il~ll~~~L~d~s~~vr~~aa~alg~la 547 (850)
.++.+...+.++++++++.++.+|+.++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 3455556667889999999999998775
No 305
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=28.70 E-value=2.8e+02 Score=27.79 Aligned_cols=68 Identities=15% Similarity=0.086 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHc-cCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Q 003081 150 TIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQ-GRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVT 227 (850)
Q Consensus 150 ~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~-~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~ 227 (850)
.+..|++.|++ ...+++-.+|..|..-+.-+++ |---| .+.+|.+..+..|..+.+|..|....+.+.
T Consensus 5 l~Qryl~~Il~----~~~~~~~~vr~~Al~~l~~il~qGLvnP------~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~ 73 (187)
T PF12830_consen 5 LVQRYLKNILE----LCLSSDDSVRLAALQVLELILRQGLVNP------KQCVPTLIALETSPNPSIRSRAYQLLKELH 73 (187)
T ss_pred HHHHHHHHHHH----HHhCCCHHHHHHHHHHHHHHHhcCCCCh------HHHHhHhhhhhCCCChHHHHHHHHHHHHHH
Confidence 34556666655 5556788999999988888876 32111 145566667778999999999987777663
No 306
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=28.42 E-value=1.2e+03 Score=28.71 Aligned_cols=91 Identities=9% Similarity=0.040 Sum_probs=61.7
Q ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHHHHhhchhhhhhhH-hhHhHHHHHH-hcCCchHHHHHHHHHHHHhcCCChhhHH
Q 003081 437 QKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYH-AVIVPVIFIS-RFEDDKYVSDLFEELWEENTSGDRVTLQ 514 (850)
Q Consensus 437 ~~li~~l~~~~~~d~~~r~~~~~~l~al~~~~~~~f~~~~-~~vlP~l~~~-~~d~~~~v~~~~~~v~~~l~~~~~~~i~ 514 (850)
..++..+-+ |+....+|..+..+++.+.+.-|...-... ..+++-++.. ++|.+..+...+.-++.-+.+-....+.
T Consensus 69 K~~~~~l~~-~~~~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~ 147 (668)
T PF04388_consen 69 KHLFDKLND-YFVKPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLG 147 (668)
T ss_pred HHHHHHHHH-HHcCchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhh
Confidence 344444444 334677898888888888877665443222 2344545543 5677777777766777777787777889
Q ss_pred hhHHHHHHHHHHhh
Q 003081 515 LYLGEIVSLICEGI 528 (850)
Q Consensus 515 ~yl~eIl~ll~~~L 528 (850)
+|+++|+.++...+
T Consensus 148 ~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 148 PHLPDLFNIFGRLL 161 (668)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988775
No 307
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=28.39 E-value=4.8e+02 Score=24.17 Aligned_cols=48 Identities=13% Similarity=0.135 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHhcCCChhhHHhhH-HHHHHHHHHhhcCCCHHHHHHHHHHH
Q 003081 492 KYVSDLFEELWEENTSGDRVTLQLYL-GEIVSLICEGIASSSWSSKRKSAKAI 543 (850)
Q Consensus 492 ~~v~~~~~~v~~~l~~~~~~~i~~yl-~eIl~ll~~~L~d~s~~vr~~aa~al 543 (850)
+++.....+++...+.-.+ +.... .++++.+...+.+++ ++..|+.+|
T Consensus 100 ~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWIP--IELIINSNLLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHHcCCHH--HHHHHHHhC
Confidence 4555555566555555322 11122 347777777776665 366665553
No 308
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=27.86 E-value=1.4e+03 Score=29.45 Aligned_cols=89 Identities=10% Similarity=0.046 Sum_probs=46.8
Q ss_pred chHHHHHHHHHHHHhcCCChhhHHhhHHH--HHHHHHHhhcCCCHHHHHHHHHHHHHHHHH--hCcchhhhHHHHHH-HH
Q 003081 491 DKYVSDLFEELWEENTSGDRVTLQLYLGE--IVSLICEGIASSSWSSKRKSAKAICKLGEI--LGESLSNYHHVLLE-SI 565 (850)
Q Consensus 491 ~~~v~~~~~~v~~~l~~~~~~~i~~yl~e--Il~ll~~~L~d~s~~vr~~aa~alg~la~~--~g~~l~~~l~~llp-~L 565 (850)
-++.|+...+++-.+.+... -.+.-+.+ ++.++.-.+.+.+..+|.++|..++.+... .|+.+.--+-..+| .+
T Consensus 1825 ~PS~R~~vL~vLYAL~S~~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f 1903 (2235)
T KOG1789|consen 1825 QPSMRARVLDVLYALSSNGQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIF 1903 (2235)
T ss_pred ChHHHHHHHHHHHHHhcCcH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHH
Confidence 56666666666655555432 11221111 222222335677889999999999999842 45544322333333 33
Q ss_pred HHhcCCCChhhHHHHHHHH
Q 003081 566 MKEVPGRLWEGKDALLYAI 584 (850)
Q Consensus 566 ~~~L~~r~~~gKe~vL~aL 584 (850)
..++++ +-|.++.+|
T Consensus 1904 ~d~~RD----~PEAaVH~f 1918 (2235)
T KOG1789|consen 1904 ADSLRD----SPEAAVHMF 1918 (2235)
T ss_pred HHHHhc----CHHHHHHHH
Confidence 444443 225555544
No 309
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=26.81 E-value=1.1e+03 Score=28.00 Aligned_cols=203 Identities=12% Similarity=0.181 Sum_probs=101.0
Q ss_pred HHHHHHHHHHhccc-cc-chHHHHHHHHHHhhhh-cCcH----------HHHHHHHHHHHHHhhhCCHHHHHHHHHHHHH
Q 003081 379 ASFISLLVQKIGMD-IK-PYTSMLLRLLFPVVKE-EKSA----------AAKRAFASACASVLKYATPSQAQKLIEETAA 445 (850)
Q Consensus 379 ~~~l~~L~~~~~~~-~~-py~~~lL~~Ll~~l~~-D~n~----------~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~ 445 (850)
|+++..++...+.+ +. ...+++...++..+.. |+.. .+-.-||.-+|.+.+..-...-.+++..+.+
T Consensus 13 CrvLieil~q~~~~~l~~~l~~~le~i~F~~lk~~d~~~~~~~~s~~~~~~~~l~AellG~lS~~rF~sVsdRF~~eL~~ 92 (552)
T PF14222_consen 13 CRVLIEILKQSPLHSLTEELGDKLEEIVFDQLKTADPVSEQPSTSPLRLANWDLFAELLGVLSEIRFVSVSDRFIAELEK 92 (552)
T ss_pred HHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHhccCccccccccchhHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHH
Confidence 44444444444322 22 2345677777777742 3311 3345667777777765444445566666655
Q ss_pred hhcCCchhhHHHHHHHHHH----Hhhc-hhhhh---hhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcC----CCh---
Q 003081 446 LHIDDKNSQISCAILLKSY----SSVA-SDVLS---GYHAVIVPVIFISRFEDDKYVSDLFEELWEENTS----GDR--- 510 (850)
Q Consensus 446 ~~~~d~~~r~~~~~~l~al----~~~~-~~~f~---~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~----~~~--- 510 (850)
.-.+-.+.+.....++..+ .+.. .+.|. .++..+.++ |...| ...+++..+.+++.++.- ...
T Consensus 93 ~~~~~~~~~~~~~~li~GMr~lrlk~~p~e~~e~s~~Fm~~l~~~-f~~~h-~~~~ik~A~~~~l~~lLlPvA~~~~~ev 170 (552)
T PF14222_consen 93 LRKDSNDAESKIELLIMGMRYLRLKMYPEEAFEESAEFMQSLAKF-FLEAH-KKSDIKHAYCEVLVELLLPVAATATAEV 170 (552)
T ss_pred hcccCCchHHHHHHHHhhcceeeecCCCHHHHHHHHHHHHHHHHH-HHhcc-hhhHHHHHHHHHHHHHHHHHhhcccccc
Confidence 5421112233333344443 1222 24453 344444444 23333 455688777777765432 111
Q ss_pred --hhHHhhHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHh-CcchhhhHH-HHHHHHHHhcCCCChhhHHHHHHHHH
Q 003081 511 --VTLQLYLGEIVSLICEGIAS-SSWSSKRKSAKAICKLGEIL-GESLSNYHH-VLLESIMKEVPGRLWEGKDALLYAIG 585 (850)
Q Consensus 511 --~~i~~yl~eIl~ll~~~L~d-~s~~vr~~aa~alg~la~~~-g~~l~~~l~-~llp~L~~~L~~r~~~gKe~vL~aL~ 585 (850)
......+..|.+.+.+.+.. ..|.. +.-.+..+--.. .+.|..+.. .++..+...+++| ..|-.+++++.
T Consensus 171 n~P~W~~~v~~i~~~~~~~~~K~khw~~---afPL~t~lLCvS~~e~F~~~W~~~~i~~~~~klKdk--~~r~~~l~~l~ 245 (552)
T PF14222_consen 171 NHPKWKEAVETIYPRAAKMMSKPKHWNV---AFPLVTTLLCVSPKEFFLSNWLPSLIESLISKLKDK--ETRPVALECLS 245 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHhCcchhhh---HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhcCCh--hhhHHHHHHHH
Confidence 12234445555555554433 34554 332222222222 244565555 5777777777777 66777777777
Q ss_pred HHH
Q 003081 586 SIS 588 (850)
Q Consensus 586 ~l~ 588 (850)
-++
T Consensus 246 RLl 248 (552)
T PF14222_consen 246 RLL 248 (552)
T ss_pred HHH
Confidence 664
No 310
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=26.66 E-value=9.9e+02 Score=27.23 Aligned_cols=91 Identities=13% Similarity=0.103 Sum_probs=56.7
Q ss_pred HHHHHHHHhcCCCh-hhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcC--CC-
Q 003081 497 LFEELWEENTSGDR-VTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVP--GR- 572 (850)
Q Consensus 497 ~~~~v~~~l~~~~~-~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~--~r- 572 (850)
+|.+..+++....+ .........++..+..+++|++..|-..|...+..=- +-..+..+-..++|.+..++. .+
T Consensus 274 ~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~--~~~li~~~~~~i~p~i~~~L~~~~~~ 351 (409)
T PF01603_consen 274 LFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEY--FLSLISQNSRVILPIIFPALYRNSKN 351 (409)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHH--HHHHHHCTHHHHHHHHHHHHSSTTSS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHH--HHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 34455556555433 4567888899999999999999988776665443211 112234455777788777773 23
Q ss_pred Chh--hHHHHHHHHHHHHH
Q 003081 573 LWE--GKDALLYAIGSIST 589 (850)
Q Consensus 573 ~~~--gKe~vL~aL~~l~~ 589 (850)
-|. +|..+..++..+..
T Consensus 352 HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 352 HWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp -SSTTHHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHHHHH
Confidence 375 57777777765543
No 311
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=26.54 E-value=1.5e+02 Score=31.44 Aligned_cols=67 Identities=13% Similarity=0.228 Sum_probs=35.6
Q ss_pred hhhhhHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh
Q 003081 90 NSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQS 166 (850)
Q Consensus 90 ~sr~gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l 166 (850)
..|-+|.-++..+...- ..-+..+.+.++.++.+.-..++.. +|..|+.+ ..+-|..++++.+-+..
T Consensus 128 yvR~aa~~aL~~l~~~~-~~~Re~vi~~f~~ll~~~l~~~~~~------~~~~Lv~~---~~dL~~~EL~~~I~~~f 194 (249)
T PF06685_consen 128 YVRMAAISALAFLVHEG-PISREEVIQYFRELLNYFLERNPSF------LWGSLVAD---ICDLYPEELLPEIRKAF 194 (249)
T ss_pred HHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHhccCchH------HHHHHHHH---HHhcCHHHhHHHHHHHH
Confidence 44555555665554422 2223345555666666655666555 67777642 45555555555554443
No 312
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=26.27 E-value=3.1e+02 Score=27.27 Aligned_cols=57 Identities=21% Similarity=0.299 Sum_probs=38.9
Q ss_pred hcCCchHHHHHHHHhccchhhhhhhhHHhhHHHHH-HHhhhhhchhhhhHHHHHHhhcCCCCH
Q 003081 69 EMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIA-KQAGDALKPHLRLLIPKLVRFQYDPDK 130 (850)
Q Consensus 69 ~~g~p~lv~~fm~la~~~~~w~sr~gAa~gl~~I~-~~~~~~l~p~L~~lvp~L~r~~~Dp~~ 130 (850)
+-+|++|-.-+.+++++.. +-|+.-|...- ...++.+.|++..+.|..++.+.+|..
T Consensus 41 ~~~W~eL~d~Ils~~~~e~-----~kA~~IF~~L~~~l~~efl~~~~~~L~~~~~~~L~~p~~ 98 (174)
T PF04510_consen 41 EGGWDELSDCILSLSENEP-----VKAFHIFICLPMPLYGEFLIPFMENLLPEISKVLLPPEE 98 (174)
T ss_pred CCCchhHHHHHHHhhccch-----HHHHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCCchh
Confidence 3467777766666664332 23554444332 336789999999999999999999964
No 313
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=26.26 E-value=3.8e+02 Score=24.24 Aligned_cols=36 Identities=6% Similarity=-0.141 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCC
Q 003081 154 HLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRK 189 (850)
Q Consensus 154 ~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~ 189 (850)
....++..|.+.+.+++|++.--+...+-.++...+
T Consensus 34 ~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g 69 (115)
T cd00197 34 GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCG 69 (115)
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHcc
Confidence 456788888888888999999988888888887554
No 314
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=26.22 E-value=77 Score=20.87 Aligned_cols=13 Identities=31% Similarity=0.307 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHH
Q 003081 173 SREASCLSLADII 185 (850)
Q Consensus 173 VReaa~~Al~~Ll 185 (850)
||.++..+|+.+=
T Consensus 1 VR~~Aa~aLg~ig 13 (27)
T PF03130_consen 1 VRRAAARALGQIG 13 (27)
T ss_dssp HHHHHHHHHGGG-
T ss_pred CHHHHHHHHHHcC
Confidence 7899999998873
No 315
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.19 E-value=1.3e+03 Score=28.56 Aligned_cols=117 Identities=15% Similarity=0.123 Sum_probs=83.0
Q ss_pred CCchHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhchh---hhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCC
Q 003081 71 GQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPH---LRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADP 147 (850)
Q Consensus 71 g~p~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~---L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~ 147 (850)
-.++.|--+|....+- +..-|+.+.-=|+++++.-+.+++.- .|.-|.+|.-...|....||..+.-....|+.|.
T Consensus 119 k~qd~I~lll~~~e~~-DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n 197 (970)
T KOG0946|consen 119 KNQDNITLLLQSLEEF-DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDN 197 (970)
T ss_pred cCchhHHHHHHHHHhh-chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccC
Confidence 3456666666666655 46778888888899988665555533 3578888888889999999999988888899876
Q ss_pred hHHHHH--HHHHHHHHHHHhhCCC----ChhHHHHHHHHHHHHHccCC
Q 003081 148 KRTIDE--HLDLIFDDLLIQSGSR----LWRSREASCLSLADIIQGRK 189 (850)
Q Consensus 148 ~~~i~~--~~~~Il~~Ll~~l~~~----~wRVReaa~~Al~~Ll~~~~ 189 (850)
+. |.+ -|+.++..|+.-+... .-=|-+-|..-+.+|+....
T Consensus 198 ~~-IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~ 244 (970)
T KOG0946|consen 198 SS-IQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNI 244 (970)
T ss_pred ch-HHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCc
Confidence 53 333 2677788777666321 23566777777888887543
No 316
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=25.96 E-value=2.3e+02 Score=25.61 Aligned_cols=70 Identities=13% Similarity=0.064 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhh-HHHHHHHHHHhcCCCChhhHHHHHHHH
Q 003081 515 LYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNY-HHVLLESIMKEVPGRLWEGKDALLYAI 584 (850)
Q Consensus 515 ~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~-l~~llp~L~~~L~~r~~~gKe~vL~aL 584 (850)
.|.++|++.+.+.+......-|-.+.+.+.+++...+.....+ ...+.|.+..+...-+.+.|+++..-+
T Consensus 33 ~~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl~ 103 (114)
T cd03562 33 KHAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERLL 103 (114)
T ss_pred HHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5677888888887776666788889999999999887654443 233366666666555566777666544
No 317
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.80 E-value=1.2e+03 Score=27.71 Aligned_cols=337 Identities=11% Similarity=0.096 Sum_probs=158.8
Q ss_pred hhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCCh--HHHHHHH---HHHHHHHHHhhCCCChhHHHHHHHHHHH
Q 003081 109 ALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPK--RTIDEHL---DLIFDDLLIQSGSRLWRSREASCLSLAD 183 (850)
Q Consensus 109 ~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~--~~i~~~~---~~Il~~Ll~~l~~~~wRVReaa~~Al~~ 183 (850)
.+.+....++-.|-.+..++..+=.+....+.+.+.+++. ....+++ .+++.-++..+++.+-. +.|...+..
T Consensus 146 ~l~~~~~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~~~lh--e~At~cic~ 223 (559)
T KOG2081|consen 146 ELAAQVSKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLSDDELH--EEATECICA 223 (559)
T ss_pred HHHHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcccchhh--HHHHHHHHH
Confidence 3444455566666666666665545556666666666653 2223333 24566677777754333 444444444
Q ss_pred HHc-------cCCchhhhHHHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHH
Q 003081 184 IIQ-------GRKFDQVGKHLRRIWTAAFRAMD-DIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFL 255 (850)
Q Consensus 184 Ll~-------~~~~~~l~~~L~~i~~~l~~~ld-D~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~L 255 (850)
++. +.+.....-.-..+++..+..-. .....-+.+..+....++........ .++....+++.. .|
T Consensus 224 ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~---~np~~~l~~vel---lL 297 (559)
T KOG2081|consen 224 LLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLIS---TNPEEFLRIVEL---LL 297 (559)
T ss_pred HHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHh---hCCCcchhHHHH---HH
Confidence 443 21111111111234444444321 11222344444444444433222221 111222223322 22
Q ss_pred hhccCCCchhHHHHHHHHHHHHHHHhc--------CcccccchHHHHHHHHHhccccchhhhhHHHHhhhhccc--chhh
Q 003081 256 LAEGILSKVDSISKASIGVVMKLVKGA--------GIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGI--QTEK 325 (850)
Q Consensus 256 l~~gL~s~~~evr~~a~~~L~~la~~~--------g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~--~~d~ 325 (850)
+-.| ....+|-++++..|-.+.... -..++||.-.++..+..-.+=. |.. .+. +.++
T Consensus 298 l~~~--h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp-~~~----------~~l~Ee~~~ 364 (559)
T KOG2081|consen 298 LVAG--HNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLP-PDQ----------FDLPEEESE 364 (559)
T ss_pred Hhcc--CCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCC-Ccc----------ccCccchhH
Confidence 2233 344689999999999887753 2457899999999888877622 210 011 1233
Q ss_pred hHHHHHhhccCCcHHHHHHHHHhhcCh-hhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHH
Q 003081 326 LENLRISIAKGSPMWDTLDLCINVVDT-ESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLL 404 (850)
Q Consensus 326 id~~r~~~~~~s~l~eal~~~~~~ld~-~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~L 404 (850)
+-..|... .+.+.++.-.+|. +.+..+--++.+ ....|..-.++.-++..++.. +.|.-..+|+-+
T Consensus 365 f~~fR~~v------~dvl~Dv~~iigs~e~lk~~~~~l~e---~~~~We~~EAaLF~l~~~~~~----~~~~e~~i~pev 431 (559)
T KOG2081|consen 365 FFEFRLKV------GDVLKDVAFIIGSDECLKQMYIRLKE---NNASWEEVEAALFILRAVAKN----VSPEENTIMPEV 431 (559)
T ss_pred HHHHHHHH------HHHHHHHHHHhCcHHHHHHHHHHHcc---CCCchHHHHHHHHHHHHHhcc----CCccccchHHHH
Confidence 33344332 3566666655553 234443333322 122344444555555555444 445544555555
Q ss_pred HHhhhh-cCcHHHHHHHHHHHHHHhhhCC--HHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhchhhhhhhHhhHh
Q 003081 405 FPVVKE-EKSAAAKRAFASACASVLKYAT--PSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIV 480 (850)
Q Consensus 405 l~~l~~-D~n~~Vr~~~a~alg~L~~~~~--~~~v~~li~~l~~~~~~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vl 480 (850)
++.+.+ +...-+|.....-+|.+.+... ++.+......+..... +......++.+...++..+.+....+.+.+.
T Consensus 432 l~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~-~~~~as~~a~~~~~i~~~c~~~~~~l~~~~~ 509 (559)
T KOG2081|consen 432 LKLICNLPEQAPLRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQ-LKRLASAAALAFHRICSACRVQMTCLIPSLL 509 (559)
T ss_pred HHHHhCCccchhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhh-hcchhHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 554421 2223388777777787765321 2233333333332221 1223344555555665555444434333333
No 318
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=25.29 E-value=9.4e+02 Score=26.48 Aligned_cols=102 Identities=12% Similarity=0.100 Sum_probs=63.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhcccCCCCCCCCcChhHHHHHHHHhhCchhhhhhhhhhhhhHHHHHHHHHHHHHHHhc
Q 003081 721 GFPWTVKMSAFSSIKELCSRLQKTLDDSAGTSPHAGISSLIQELFHTVSPKVVECISTVKIAQVHISASECLLEICKLFR 800 (850)
Q Consensus 721 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~~~ 800 (850)
+..-....++.+++..+.+.+... .+.....++...++.......+....+......+++++.+-+++.+.+-+...
T Consensus 197 ey~~~~~~~~~ks~e~~~~~l~~~---~~~g~~v~s~re~~d~W~~~ae~~~~e~~~S~efak~~G~lvna~m~lr~~~q 273 (320)
T TIGR01834 197 DYQLLEADIGYKSFAALMSDLLAR---AKSGKPVKTAKALYDLWVIAAEEAYAEVFASEENAKVHGKFINALMRLRIQQQ 273 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc---cccCCCchhHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566777777777777754 12222335577888888888777777776677899999999998888753331
Q ss_pred cc------cccccCccchHHHHHHHHHHhhh
Q 003081 801 QI------SSVYSSNIGIKGELVHQCEMEKN 825 (850)
Q Consensus 801 ~~------~~~~~~~~~~~~~~~~~~~~~~~ 825 (850)
.. .++-++..++.+.=+.+.+-||.
T Consensus 274 e~~e~~L~~LnlPTRsElDe~~krL~ELrR~ 304 (320)
T TIGR01834 274 EIVEALLKMLNLPTRSELDEAHQRIQQLRRE 304 (320)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 11 11224445555555556666654
No 319
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=24.64 E-value=3.6e+02 Score=26.77 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=34.2
Q ss_pred hhhhhHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhc
Q 003081 90 NSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLV 144 (850)
Q Consensus 90 ~sr~gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv 144 (850)
+-||.+..++..-..+ +.++..++..+-+...|+...||.+++-..+.+.
T Consensus 120 ~~rR~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~ 169 (197)
T cd06561 120 WVRRAAIVLLLRLIKK-----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYG 169 (197)
T ss_pred HHHHHHHHHHHHHHHh-----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 4455555444332222 3466778888888899999999999998776665
No 320
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=24.59 E-value=6.8e+02 Score=26.54 Aligned_cols=108 Identities=19% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHhhc--------CCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHH------HhcCCchHHHHHHHHHHHH
Q 003081 439 LIEETAALHI--------DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFI------SRFEDDKYVSDLFEELWEE 504 (850)
Q Consensus 439 li~~l~~~~~--------~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~------~~~d~~~~v~~~~~~v~~~ 504 (850)
++.+++..|. .....|.+-+.++....-..|+.=..++..=+|..+. ....+.|..|-...++.+.
T Consensus 72 LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIga 151 (293)
T KOG3036|consen 72 LLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGA 151 (293)
T ss_pred HHHHHHhcccccCCCCCCccccchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHH
Q ss_pred hcCCChhhHHhhH--HHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 003081 505 NTSGDRVTLQLYL--GEIVSLICEGIASSSWSSKRKSAKAICKL 546 (850)
Q Consensus 505 l~~~~~~~i~~yl--~eIl~ll~~~L~d~s~~vr~~aa~alg~l 546 (850)
++...+..+-.|+ .||++++.+.+...+...|..|...++.+
T Consensus 152 Lvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKI 195 (293)
T KOG3036|consen 152 LVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKI 195 (293)
T ss_pred HHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHH
No 321
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=24.21 E-value=3.5e+02 Score=25.05 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhh---CCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhc---------cCcHHHHHHHH
Q 003081 153 EHLDLIFDDLLIQS---GSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMD---------DIKETVRTAGD 220 (850)
Q Consensus 153 ~~~~~Il~~Ll~~l---~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ld---------D~k~~VR~aA~ 220 (850)
..+..|+..|...+ .+++||+-.-|..-|--|+...+ +.+...+..-...+..+.+ |....||+.|.
T Consensus 35 ~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~-~~~~~~~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~ 113 (125)
T PF01417_consen 35 KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGS-ERFVDELRDHIDIIRELQDFQYVDPKGKDQGQNVREKAK 113 (125)
T ss_dssp HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS--HHHHHHHHHTHHHHHGGGG---BBTTSTBHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHhhcceeeccCCCCccHHHHHHHHHH
Q ss_pred HHHHHH
Q 003081 221 KLCRSV 226 (850)
Q Consensus 221 ~~~~~L 226 (850)
.++.-|
T Consensus 114 ~i~~lL 119 (125)
T PF01417_consen 114 EILELL 119 (125)
T ss_dssp HHHHHH
T ss_pred HHHHHh
No 322
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=23.63 E-value=6.7e+02 Score=25.14 Aligned_cols=93 Identities=9% Similarity=0.083 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCC-----CChhhHHHHHHHHHHHHHhcccccccCCCCchHHHH
Q 003081 533 WSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPG-----RLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIV 607 (850)
Q Consensus 533 ~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~-----r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~ 607 (850)
-.||..|..++..+. ..+..-.+++| =.+.|.+.++. -.|..=...+..+..+.. .+.|...++
T Consensus 21 DrvR~~A~~~l~~ll-~~~~~~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~---------~~~y~~~ll 89 (193)
T PF12612_consen 21 DRVREVAGKCLQRLL-HSQDPTIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLLD---------LPEYRYSLL 89 (193)
T ss_pred HHHHHHHHHHHHHHh-cCCCccccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHhc---------cHHHHHHHH
Confidence 358999999999888 33322112222 12334443422 237666666666665542 224667777
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHc
Q 003081 608 DMVSSACRKKIKKYREAAFSCLEQVIKAF 636 (850)
Q Consensus 608 ~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~ 636 (850)
.-++-.++..++.+.+.|..+|-.++...
T Consensus 90 ~Glv~S~G~~tesl~~~s~~AL~~~~~~~ 118 (193)
T PF12612_consen 90 SGLVVSAGGLTESLVRASSAALLSYLREL 118 (193)
T ss_pred hHHHhcCCCCchhHHHHHHHHHHHHHHHh
Confidence 77788888788889999999999988754
No 323
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=23.24 E-value=4.1e+02 Score=22.96 Aligned_cols=54 Identities=9% Similarity=0.061 Sum_probs=38.1
Q ss_pred HHHHHHHHHh-hcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCC
Q 003081 518 GEIVSLICEG-IASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPG 571 (850)
Q Consensus 518 ~eIl~ll~~~-L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~ 571 (850)
.+++.-+... ...++.++|.....++..+....|..+..-.+.++.++..+..+
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~ 70 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKD 70 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhC
Confidence 3444444444 34467899999999999999988887776566666666666654
No 324
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=23.11 E-value=6.4e+02 Score=25.31 Aligned_cols=37 Identities=16% Similarity=0.164 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcc
Q 003081 151 IDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQG 187 (850)
Q Consensus 151 i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~ 187 (850)
++.|..+++.++..++++..-.+..+|..||.+.+.+
T Consensus 81 ~~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~ 117 (193)
T PF12612_consen 81 LPEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRE 117 (193)
T ss_pred cHHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHH
Confidence 4678888999999888887778888888888887753
No 325
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=23.08 E-value=5.3e+02 Score=24.64 Aligned_cols=64 Identities=9% Similarity=0.005 Sum_probs=38.4
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHH--HHHHHH-HHHhhCC---CChhHHHHHHHHHHH
Q 003081 117 LIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHL--DLIFDD-LLIQSGS---RLWRSREASCLSLAD 183 (850)
Q Consensus 117 lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~--~~Il~~-Ll~~l~~---~~wRVReaa~~Al~~ 183 (850)
|-.+| .+.+||+|+.-+..+..+|+++....+...+ ...+.+ |..-+.. ..-.|+.-...-+..
T Consensus 43 lkkRl---~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~ 112 (141)
T cd03565 43 LKKRL---NGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQA 112 (141)
T ss_pred HHHHH---ccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHH
Confidence 44555 3578999999899999999998754332211 345555 4444432 234666655544433
No 326
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=22.81 E-value=1.7e+03 Score=28.66 Aligned_cols=54 Identities=19% Similarity=0.308 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHhccCChH---HHHHHH-HHHHHHHHHhhCCCChhH-HHHHHHHHHHHH
Q 003081 131 NVQDAMAHIWKSLVADPKR---TIDEHL-DLIFDDLLIQSGSRLWRS-REASCLSLADII 185 (850)
Q Consensus 131 ~VR~a~~~iw~~Lv~d~~~---~i~~~~-~~Il~~Ll~~l~~~~wRV-Reaa~~Al~~Ll 185 (850)
++|..++.-|..++.-.+. ..+.++ +.++ .++.++++..||. |.-|..+.-.+.
T Consensus 170 ~fr~~~~~fl~~lV~q~q~~s~l~d~~lmd~~i-s~LtamSdSqvR~fRhTaTl~~mklm 228 (1048)
T KOG2011|consen 170 NFRENFCEFLPTLVSQCQYGSCLFDSFLMDDLI-SWLTAMSDSQVRAFRHTATLAAMKLM 228 (1048)
T ss_pred HHHHHHHHHHHHHHHHhccCCccccchhHHHHH-HHHHHhccccHHHHHHHHHHHHHHHH
Confidence 6778889999999854321 234443 4444 4677888989997 888887766654
No 327
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=22.71 E-value=5.4e+02 Score=24.61 Aligned_cols=79 Identities=18% Similarity=0.231 Sum_probs=41.9
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhh-hH
Q 003081 117 LIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQV-GK 195 (850)
Q Consensus 117 lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l-~~ 195 (850)
+.-.+++...++++.||+.+.+|.-+-- ++ .+..|- +.|..-+.|+.+| + .+..+..+...+.+ ..
T Consensus 18 l~~~~~~LL~~~d~~vQklAL~cll~~k-~~--~l~pY~----d~L~~Lldd~~fr--d----eL~~f~~~~~~~~I~~e 84 (141)
T PF07539_consen 18 LYDALLRLLSSRDPEVQKLALDCLLTWK-DP--YLTPYK----DNLENLLDDKTFR--D----ELTTFNLSDESSVIEEE 84 (141)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhC-cH--HHHhHH----HHHHHHcCcchHH--H----HHHhhcccCCcCCCCHH
Confidence 3444455579999999999988665432 22 333333 2233334455444 2 23333333221112 35
Q ss_pred HHHHHHHHHHHHh
Q 003081 196 HLRRIWTAAFRAM 208 (850)
Q Consensus 196 ~L~~i~~~l~~~l 208 (850)
|-++++|.++|.+
T Consensus 85 hR~~l~pvvlRIL 97 (141)
T PF07539_consen 85 HRPELMPVVLRIL 97 (141)
T ss_pred HHhHHHHHHHHHH
Confidence 6667777776664
No 328
>TIGR03060 PS_II_psb29 photosystem II biogenesis protein Psp29. Psp29, originally designated sll1414 in Synechocystis 6803, is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.
Probab=22.40 E-value=3.1e+02 Score=28.26 Aligned_cols=69 Identities=26% Similarity=0.428 Sum_probs=45.5
Q ss_pred hcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHH
Q 003081 124 FQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHL 197 (850)
Q Consensus 124 ~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L 197 (850)
|.+||--. --...++..++.+.+ .++|.+.|+..+.++++-..-++|+-|- .+.+...+.+.+++...+
T Consensus 46 F~yDplfA--lGlvt~fd~fm~GY~--Pee~~~~IF~Alc~a~~~dp~~~r~dA~-~l~~~a~~~s~~~i~~~l 114 (214)
T TIGR03060 46 FKYDPLFA--LGLVTVFDRFMEGYR--PEEHLDALFDALCNSNGFDPEQLREDAK-QLLEQAKGKGLDEILSWL 114 (214)
T ss_pred ceeCchHH--hhHHHHHHHHHcCCC--ChHHHHHHHHHHHHhcCCCHHHHHHHHH-HHHHHHhcCCHHHHHHHH
Confidence 66676432 234566777776643 4778899999999999876667787764 455566666665554443
No 329
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=21.61 E-value=1.4e+03 Score=27.14 Aligned_cols=29 Identities=21% Similarity=0.384 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhcCcccccchHHHHHHHHH
Q 003081 271 SIGVVMKLVKGAGIAIRPHLSDLVSCMLE 299 (850)
Q Consensus 271 a~~~L~~la~~~g~~l~P~lp~Lvp~LL~ 299 (850)
.+.++..+.......+.||+|.+++.|.+
T Consensus 182 LLrvlS~Vye~~P~~i~PhlP~l~~lL~q 210 (851)
T KOG3723|consen 182 LLRVLSAVYEKQPQPINPHLPELLALLSQ 210 (851)
T ss_pred HHHHHHHHHhcCCCccCcccHHHHHHhcC
Confidence 35566777777889999999988887654
No 330
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=21.17 E-value=2.1e+03 Score=29.15 Aligned_cols=48 Identities=8% Similarity=0.028 Sum_probs=30.9
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCc-hh--HHhHHHHHHhhcc
Q 003081 607 VDMVSSACRKKIKKYREAAFSCLEQVIKAFRDP-KF--FNIIFPLLFEMCG 654 (850)
Q Consensus 607 ~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~~~-~~--~~iv~~~l~~~~~ 654 (850)
+..++..++...-.+..-|+.+||.|...-+.+ ++ .+--.|.|.++.-
T Consensus 532 Lq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIh 582 (2195)
T KOG2122|consen 532 LQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIH 582 (2195)
T ss_pred HHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHh
Confidence 557777777777778888899999977655432 22 2233456666543
No 331
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=20.90 E-value=1e+03 Score=27.37 Aligned_cols=121 Identities=14% Similarity=0.076 Sum_probs=63.1
Q ss_pred HHHHHHH-HhhCCCChhHHHHHHHHHHHHHccCCchh-hhHHH---HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHH
Q 003081 157 LIFDDLL-IQSGSRLWRSREASCLSLADIIQGRKFDQ-VGKHL---RRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTI 231 (850)
Q Consensus 157 ~Il~~Ll-~~l~~~~wRVReaa~~Al~~Ll~~~~~~~-l~~~L---~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~ 231 (850)
..+.+++ ...-.+.|-.|+.+..|...++...+.-. .+.|+ ..-+..+-+..||+...+-.+-.++++.+..-++
T Consensus 392 dslddileaealcktppdqedallaaikkfgeePiakikedhfenlkagieeiReaIddisaekfqasfelikciiahli 471 (666)
T KOG4825|consen 392 DSLDDILEAEALCKTPPDQEDALLAAIKKFGEEPIAKIKEDHFENLKAGIEEIREAIDDISAEKFQASFELIKCIIAHLI 471 (666)
T ss_pred hhhhhHHHHHHHhcCCccchhhHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444443 22345678888888888777776444322 23333 3333334455677766666666555555543322
Q ss_pred HhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHh
Q 003081 232 RLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKG 281 (850)
Q Consensus 232 r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~ 281 (850)
....-+.-.....+..-+|.++-. -.+....+|..|.+++..++--
T Consensus 472 ---kehkfskledahclehhfctlllp-ngdleariqrtAaefieelAlf 517 (666)
T KOG4825|consen 472 ---KEHKFSKLEDAHCLEHHFCTLLLP-NGDLEARIQRTAAEFIEELALF 517 (666)
T ss_pred ---chhhhhhhhHHHHHHHhhhhhhcC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 111100000112445556665522 1234567888888888877653
No 332
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=20.82 E-value=1.5e+03 Score=27.31 Aligned_cols=214 Identities=14% Similarity=0.165 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHhhc-CCchhhHHHHHHHHHHHhhchhh-hhhhHhhHh-HHHHHHhcC---CchH---HHHHHHHHHHHh
Q 003081 435 QAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDV-LSGYHAVIV-PVIFISRFE---DDKY---VSDLFEELWEEN 505 (850)
Q Consensus 435 ~v~~li~~l~~~~~-~d~~~r~~~~~~l~al~~~~~~~-f~~~~~~vl-P~l~~~~~d---~~~~---v~~~~~~v~~~l 505 (850)
....++..+...|+ +++..|..+..++..++...... |.+++.... -++..+..- .-+- .+..+.++..--
T Consensus 279 ~lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~~~~l~~vlk~mY~afv~nsk~~~~~tl~~i~Fl~~slvEL~~ld 358 (661)
T KOG2256|consen 279 LLKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFKSTCLDPVLKTMYLAFVRNSKFVTVNTLPLINFLQNSLVELLGLD 358 (661)
T ss_pred HHHHHHHHHheeeccCCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCCcccchhHHHHHHHHHHhccC
Confidence 34556666666665 67777888887777776655432 222222111 111111111 1111 233333333211
Q ss_pred cCCChhhHHhhHHHHHHHHHHhhcCC---------CHHHHHHHHHHHHHHH-HHhC-cchhhhHHHHHHHHHHh---cC-
Q 003081 506 TSGDRVTLQLYLGEIVSLICEGIASS---------SWSSKRKSAKAICKLG-EILG-ESLSNYHHVLLESIMKE---VP- 570 (850)
Q Consensus 506 ~~~~~~~i~~yl~eIl~ll~~~L~d~---------s~~vr~~aa~alg~la-~~~g-~~l~~~l~~llp~L~~~---L~- 570 (850)
....-..--.|...+--.+-.++... +|..-++--.=++.|+ .+.+ +.+.|.+.+++.+.... ++
T Consensus 359 ~~~~Yq~aF~yIrQLAihLRnam~~k~K~s~~~VYnWqfi~cL~lW~rvisf~~~~~s~lq~LvYpLvQvi~GvirLipT 438 (661)
T KOG2256|consen 359 LQVSYQHAFVYIRQLAIHLRNAMITKNKESVQSVYNWQYVHCLDLWLRVISFANGSASQLQPLVYPLVQVILGVIRLIPT 438 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccHhhhhhhhhHHHHHHHHHhhhcCc
Confidence 11100111244444444444444332 4555554444445555 2222 23444333333333333 33
Q ss_pred CCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHh-h-----------------------cCHHH----H
Q 003081 571 GRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACR-K-----------------------KIKKY----R 622 (850)
Q Consensus 571 ~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~-r-----------------------~~~~~----R 622 (850)
.+-++.|-.++..|..++..++.++ |..+.++..+-.-.. | +...| +
T Consensus 439 ~qy~PLRlhcir~Li~Ls~ssg~fI-----Pi~~ll~Eml~~~~~nrkp~~~~~k~~D~~~~Lk~sk~~L~sk~yq~~~i 513 (661)
T KOG2256|consen 439 PQYYPLRLHCIRSLISLSRSSGTFI-----PLSPLLVEMLKSVTFNRKPKASSVKPIDFDSTLKLSKRYLRSKAYQDGVI 513 (661)
T ss_pred ccchhHHHHHHHHHHHHHhhcCcee-----ecHHHHHHHHHHhhccCCccccccCCCCeeEEeecCHHHhccHHHHHHHH
Confidence 3558999999999999999888655 333444333221100 0 12233 4
Q ss_pred HHHHHHHHHHHHHcC-CchhHHhHHHHHHhhc
Q 003081 623 EAAFSCLEQVIKAFR-DPKFFNIIFPLLFEMC 653 (850)
Q Consensus 623 ~~Al~~Lg~l~~~~~-~~~~~~iv~~~l~~~~ 653 (850)
.+.+..|.++...+. ...|-+.+.|.+..+.
T Consensus 514 eqv~~lL~ey~a~~s~~IaFPELv~p~i~rLk 545 (661)
T KOG2256|consen 514 EQVIELLLEYFALFSKSIAFPELVLPVIMRLK 545 (661)
T ss_pred HHHHHHHHHHHHHHhccCCchhhhHHHHHHHH
Confidence 455566666666653 3457777777766653
No 333
>PF14837 INTS5_N: Integrator complex subunit 5 N-terminus
Probab=20.74 E-value=9.4e+02 Score=24.82 Aligned_cols=28 Identities=29% Similarity=0.188 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHHHHhc-CcccccchH
Q 003081 264 VDSISKASIGVVMKLVKGA-GIAIRPHLS 291 (850)
Q Consensus 264 ~~evr~~a~~~L~~la~~~-g~~l~P~lp 291 (850)
.+.+-..+++.+++|+++. |....|+.+
T Consensus 103 ap~i~~Wsl~Llgelssk~~~R~~~~~~~ 131 (213)
T PF14837_consen 103 APLISAWSLELLGELSSKYAGRRGVPHSS 131 (213)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 4678888999999998764 554455544
No 334
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=20.65 E-value=1.7e+03 Score=27.87 Aligned_cols=77 Identities=16% Similarity=0.166 Sum_probs=49.1
Q ss_pred hhhhHHHHHHhhcCCCC----HhHHHHHHHHHHHhccCChH-H----------------HHHHHHHHHHHHHHhhCCCCh
Q 003081 113 HLRLLIPKLVRFQYDPD----KNVQDAMAHIWKSLVADPKR-T----------------IDEHLDLIFDDLLIQSGSRLW 171 (850)
Q Consensus 113 ~L~~lvp~L~r~~~Dp~----~~VR~a~~~iw~~Lv~d~~~-~----------------i~~~~~~Il~~Ll~~l~~~~w 171 (850)
-++.++-.|-+++.+++ +.+-+.+..|...++.+... . -.++++-+++.+-......+.
T Consensus 164 al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~ 243 (802)
T PF13764_consen 164 ALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNP 243 (802)
T ss_pred CHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCH
Confidence 35567777777778877 77778888888887754321 0 122344444444433334468
Q ss_pred hHHHHHHHHHHHHHccCC
Q 003081 172 RSREASCLSLADIIQGRK 189 (850)
Q Consensus 172 RVReaa~~Al~~Ll~~~~ 189 (850)
+++++.+..|..|.-|..
T Consensus 244 ~i~~~l~RiLP~Lt~G~~ 261 (802)
T PF13764_consen 244 QILQALARILPFLTYGNE 261 (802)
T ss_pred HHHHHHHHHhhHHhcCCH
Confidence 888888888888877654
No 335
>TIGR03486 cas_csx13_C CRISPR-associated protein, Cas_csx13 family, C-terminal region. Members of this family are found among cas (CRISPR-Associated) genes close to CRISPR repeats in Leptospira interrogans (a spirochete), Myxococcus xanthus (a delta-proteobacterium), and Lyngbya sp. PCC 8106 (a cyanobacterium). It is found with other cas genes in Anabaena variabilis ATCC 29413. In Lyngbya sp., the protein is split into two tandem genes. This model corresponds to the C-terminal region or upstream gene; the N-terminal region is modelled by TIGR03485. CRISPR/cas systems are associated with prokaryotic acquired resistance to phage and other exogenous DNA.
Probab=20.55 E-value=5.6e+02 Score=24.87 Aligned_cols=78 Identities=15% Similarity=0.285 Sum_probs=48.2
Q ss_pred HHHHHHHhhh----hhchhhhhHHHHHHhhcCCC--CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChh
Q 003081 99 FSKIAKQAGD----ALKPHLRLLIPKLVRFQYDP--DKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWR 172 (850)
Q Consensus 99 l~~I~~~~~~----~l~p~L~~lvp~L~r~~~Dp--~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wR 172 (850)
++.|++...+ ...+.+.+--.+++.-+..+ .+.+|..+++-|.-=-.. ..+.+|...|++.|. . + +|+
T Consensus 65 ~~qI~~~tk~~g~~~~~~~~e~e~erir~~l~r~kt~~~fr~~i~df~srAg~~--~~Lqe~~~~il~~l~-~--~-nw~ 138 (152)
T TIGR03486 65 YAKIASHTKRRGSETLGDRWKRENERIYSSLARAKTSEQFRTFIADLWARAGRI--PSLQEHWGALLKLIS-K--D-NWE 138 (152)
T ss_pred HHHHHHHhhhhcccchhHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHccCC--cchHHHHHHHHHHHh-h--c-cHH
Confidence 3666666543 23344444444444333333 567999999998554333 357999999999877 2 3 687
Q ss_pred H-HHHHHHHHH
Q 003081 173 S-REASCLSLA 182 (850)
Q Consensus 173 V-Reaa~~Al~ 182 (850)
. |.-+..||+
T Consensus 139 ~aRdLaLlALA 149 (152)
T TIGR03486 139 YARDLALVALA 149 (152)
T ss_pred HHHHHHHHHHh
Confidence 5 666666664
No 336
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=20.19 E-value=9.3e+02 Score=24.53 Aligned_cols=77 Identities=17% Similarity=0.157 Sum_probs=56.8
Q ss_pred hHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhH
Q 003081 116 LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGK 195 (850)
Q Consensus 116 ~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~ 195 (850)
.+.+.++....|+|.=+||++.-..-.... ...++.++.-+...++|+++=|+.|..++|.++... .++.+..
T Consensus 115 ~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~------~~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~-d~~~V~~ 187 (208)
T cd07064 115 EFEPVMDEWSTDENFWLRRTAILHQLKYKE------KTDTDLLFEIILANLGSKEFFIRKAIGWALREYSKT-NPDWVRD 187 (208)
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHHHH------ccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcc-CHHHHHH
Confidence 346788888999999999998754322221 234567777778889999999999999999998654 4456666
Q ss_pred HHHH
Q 003081 196 HLRR 199 (850)
Q Consensus 196 ~L~~ 199 (850)
|+.+
T Consensus 188 fl~~ 191 (208)
T cd07064 188 FVAA 191 (208)
T ss_pred HHHH
Confidence 6554
Done!