Query 003081
Match_columns 850
No_of_seqs 378 out of 1179
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 12:36:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003081.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003081hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 100.0 1.9E-29 6.4E-34 312.3 59.3 562 59-653 110-764 (852)
2 2bpt_A Importin beta-1 subunit 100.0 7.4E-29 2.5E-33 306.3 58.7 679 9-769 89-835 (861)
3 2bpt_A Importin beta-1 subunit 100.0 3.2E-28 1.1E-32 300.7 52.7 540 57-640 199-817 (861)
4 1qgr_A Protein (importin beta 100.0 2.9E-27 9.9E-32 292.7 58.1 563 59-653 109-851 (876)
5 4fdd_A Transportin-1; heat rep 100.0 9.6E-28 3.3E-32 297.0 53.1 645 89-801 104-788 (852)
6 1u6g_C TIP120 protein, CAND1; 100.0 2.4E-27 8.3E-32 304.5 55.8 602 117-799 7-681 (1230)
7 1u6g_C TIP120 protein, CAND1; 100.0 2.2E-28 7.5E-33 314.2 44.3 545 74-653 48-659 (1230)
8 1b3u_A Protein (protein phosph 100.0 1.5E-27 5.2E-32 281.4 43.9 567 76-737 12-585 (588)
9 1qgr_A Protein (importin beta 100.0 5.5E-26 1.9E-30 281.2 51.0 495 74-589 321-871 (876)
10 1b3u_A Protein (protein phosph 100.0 3.2E-26 1.1E-30 270.1 43.6 530 59-654 30-568 (588)
11 1ibr_B P95, importin beta-1 su 99.8 7.5E-18 2.6E-22 192.2 39.0 392 159-638 3-441 (462)
12 1ibr_B P95, importin beta-1 su 99.8 1.6E-16 5.4E-21 181.2 36.0 400 120-570 5-461 (462)
13 2x19_B Importin-13; nuclear tr 99.8 1.6E-13 5.6E-18 171.6 59.4 547 62-638 126-756 (963)
14 2x1g_F Cadmus; transport prote 99.7 1.7E-13 5.7E-18 171.8 57.5 552 62-639 108-765 (971)
15 2x1g_F Cadmus; transport prote 99.7 1.2E-12 4.3E-17 163.9 47.4 497 89-636 258-860 (971)
16 2jdq_A Importin alpha-1 subuni 99.6 7E-13 2.4E-17 150.6 35.6 399 159-633 22-442 (450)
17 2x19_B Importin-13; nuclear tr 99.6 1.4E-11 4.9E-16 154.0 50.5 525 58-637 221-849 (963)
18 1wa5_C Importin alpha RE-expor 99.6 1.7E-12 5.8E-17 162.4 41.7 440 108-636 327-845 (960)
19 2jdq_A Importin alpha-1 subuni 99.6 3.9E-13 1.3E-17 152.7 27.9 393 118-547 22-442 (450)
20 1wa5_B Importin alpha subunit; 99.6 1.6E-12 5.5E-17 151.7 31.5 404 114-633 85-509 (530)
21 2vgl_B AP-2 complex subunit be 99.6 2.1E-12 7E-17 152.9 32.7 405 116-638 49-461 (591)
22 2qk2_A LP04448P; mini spindles 99.5 7.8E-14 2.7E-18 145.7 17.5 200 79-295 20-221 (242)
23 2vgl_B AP-2 complex subunit be 99.5 4E-12 1.4E-16 150.5 33.7 468 74-631 49-529 (591)
24 3m1i_C Exportin-1; heat repeat 99.5 4.6E-10 1.6E-14 141.7 53.3 482 63-566 124-694 (1049)
25 1wa5_C Importin alpha RE-expor 99.5 2.5E-10 8.6E-15 142.7 49.0 455 114-590 121-671 (960)
26 1wa5_B Importin alpha subunit; 99.5 1.8E-12 6.2E-17 151.2 26.6 394 74-548 87-510 (530)
27 4b8j_A Importin subunit alpha- 99.5 1.1E-11 3.8E-16 144.4 33.0 402 157-635 74-497 (528)
28 3m1i_C Exportin-1; heat repeat 99.5 1.6E-10 5.4E-15 145.9 45.9 436 110-637 338-881 (1049)
29 4b8j_A Importin subunit alpha- 99.5 1.6E-11 5.5E-16 143.0 33.4 394 116-548 74-496 (528)
30 2qk1_A Protein STU2; STU2P, XM 99.5 1E-13 3.4E-18 145.6 13.0 206 79-293 21-234 (249)
31 4hat_C Exportin-1; heat repeat 99.4 3.1E-08 1.1E-12 123.4 57.9 640 70-743 134-882 (1023)
32 2z6g_A B-catenin; FULL-length, 99.4 2.1E-10 7E-15 140.0 36.7 486 117-637 116-666 (780)
33 4hat_C Exportin-1; heat repeat 99.4 4.7E-10 1.6E-14 139.7 39.9 433 108-637 383-881 (1023)
34 1w63_A Adapter-related protein 99.4 1.7E-09 5.7E-14 128.6 42.7 465 117-634 71-576 (618)
35 2z6h_A Catenin beta-1, beta-ca 99.4 5.5E-10 1.9E-14 133.4 38.6 453 60-551 35-530 (644)
36 1w63_A Adapter-related protein 99.4 3.5E-09 1.2E-13 125.8 43.3 400 158-638 71-494 (618)
37 2z6h_A Catenin beta-1, beta-ca 99.4 3.3E-10 1.1E-14 135.4 34.1 465 116-636 14-529 (644)
38 1jdh_A Beta-catenin; beta-cate 99.4 6.7E-10 2.3E-14 128.7 35.5 457 116-632 17-528 (529)
39 3now_A UNC-45 protein, SD10334 99.4 2.4E-09 8.1E-14 128.7 40.4 524 89-636 218-784 (810)
40 1jdh_A Beta-catenin; beta-cate 99.4 1.3E-09 4.3E-14 126.5 36.9 430 72-546 57-528 (529)
41 2z6g_A B-catenin; FULL-length, 99.3 1.5E-09 5E-14 132.5 36.2 439 72-553 190-668 (780)
42 2vgl_A Adaptor protein complex 99.3 2.7E-08 9.2E-13 118.0 44.1 466 117-634 75-588 (621)
43 3now_A UNC-45 protein, SD10334 99.3 1.3E-08 4.4E-13 122.4 41.4 470 74-589 246-782 (810)
44 3ibv_A Exportin-T; karyopherin 99.3 4E-08 1.4E-12 122.2 46.2 558 63-652 114-789 (980)
45 3ibv_A Exportin-T; karyopherin 99.3 2.9E-09 9.9E-14 132.4 34.4 442 108-575 374-902 (980)
46 2qk2_A LP04448P; mini spindles 99.2 6.4E-10 2.2E-14 115.8 21.0 195 355-593 13-209 (242)
47 2qk1_A Protein STU2; STU2P, XM 99.2 1.8E-10 6.1E-15 120.8 15.7 157 74-230 60-222 (249)
48 3ul1_B Importin subunit alpha- 99.2 3.6E-08 1.2E-12 114.3 35.3 354 159-591 59-432 (510)
49 3tpo_A Importin subunit alpha- 99.1 1.2E-07 4E-12 110.5 36.1 357 158-591 77-451 (529)
50 2iw3_A Elongation factor 3A; a 99.1 3E-09 1E-13 129.6 21.1 297 116-467 18-325 (986)
51 3gjx_A Exportin-1; transport, 99.1 5.1E-07 1.7E-11 112.2 40.1 402 132-638 455-908 (1073)
52 2vgl_A Adaptor protein complex 99.1 2.5E-07 8.4E-12 109.8 35.7 405 158-638 75-513 (621)
53 3tpo_A Importin subunit alpha- 99.0 9.6E-08 3.3E-12 111.2 30.6 316 75-467 120-450 (529)
54 3ul1_B Importin subunit alpha- 99.0 7.7E-08 2.6E-12 111.6 28.3 317 75-468 101-432 (510)
55 1oyz_A Hypothetical protein YI 99.0 2.7E-08 9.4E-13 105.5 21.9 252 76-424 25-277 (280)
56 2iw3_A Elongation factor 3A; a 98.9 1.1E-08 3.7E-13 124.7 17.0 211 93-308 70-311 (986)
57 4db8_A Armadillo-repeat protei 98.9 8.3E-08 2.8E-12 99.7 19.8 221 76-308 14-238 (252)
58 3gjx_A Exportin-1; transport, 98.8 7E-07 2.4E-11 110.9 29.9 427 55-532 451-936 (1073)
59 1oyz_A Hypothetical protein YI 98.8 2.7E-07 9.3E-12 97.7 21.8 236 359-654 25-262 (280)
60 4hxt_A De novo protein OR329; 98.8 2.7E-07 9.3E-12 95.3 19.4 220 76-307 4-227 (252)
61 3ltm_A Alpha-REP4; protein eng 98.7 2.1E-07 7.1E-12 94.2 16.6 176 70-308 15-190 (211)
62 4db6_A Armadillo repeat protei 98.7 2.5E-07 8.4E-12 93.4 16.9 193 75-280 13-209 (210)
63 3ltj_A Alpharep-4; protein eng 98.7 5.9E-07 2E-11 90.1 19.5 190 392-633 7-197 (201)
64 4hxt_A De novo protein OR329; 98.7 1.1E-06 3.7E-11 90.8 21.6 234 401-638 4-245 (252)
65 4db8_A Armadillo-repeat protei 98.7 2.2E-07 7.4E-12 96.6 16.2 211 57-280 30-251 (252)
66 3l6x_A Catenin delta-1; cateni 98.7 6.1E-05 2.1E-09 87.6 38.2 407 91-548 24-476 (584)
67 3ltj_A Alpharep-4; protein eng 98.6 8.9E-07 3E-11 88.7 17.6 174 72-308 12-185 (201)
68 3ltm_A Alpha-REP4; protein eng 98.6 1.2E-06 4.1E-11 88.5 18.6 186 399-636 19-205 (211)
69 4ady_A RPN2, 26S proteasome re 98.6 2.4E-05 8.2E-10 94.4 31.2 354 63-548 338-719 (963)
70 3a6p_A Exportin-5; exportin-5, 98.6 6.6E-05 2.2E-09 95.6 37.2 442 71-531 131-683 (1204)
71 3a6p_A Exportin-5; exportin-5, 98.6 5.5E-05 1.9E-09 96.4 36.2 471 128-636 108-699 (1204)
72 4ffb_C Protein STU2; tubulin f 98.5 4.4E-06 1.5E-10 88.6 18.5 196 162-433 14-216 (278)
73 2db0_A 253AA long hypothetical 98.4 0.0001 3.5E-09 70.8 25.0 214 357-589 32-246 (253)
74 1xm9_A Plakophilin 1; armadill 98.4 0.00017 5.7E-09 82.2 32.0 354 159-547 4-448 (457)
75 4db6_A Armadillo repeat protei 98.4 3.4E-06 1.2E-10 84.8 15.7 178 117-307 13-195 (210)
76 1xm9_A Plakophilin 1; armadill 98.3 9.2E-05 3.1E-09 84.3 26.7 368 118-505 4-447 (457)
77 1xqr_A HSPBP1 protein; armadil 98.3 5.2E-05 1.8E-09 81.0 22.0 177 90-281 55-239 (296)
78 4ffb_C Protein STU2; tubulin f 98.2 1.2E-05 4.1E-10 85.2 15.3 188 83-285 18-217 (278)
79 4ady_A RPN2, 26S proteasome re 98.1 0.00013 4.5E-09 88.1 22.3 279 89-448 409-698 (963)
80 2of3_A ZYG-9; multifunctional 98.1 0.00039 1.3E-08 72.4 22.8 188 161-434 50-241 (266)
81 3nmz_A APC variant protein; pr 98.0 0.00094 3.2E-08 75.6 26.2 214 375-591 217-452 (458)
82 3l6x_A Catenin delta-1; cateni 98.0 0.0072 2.5E-07 70.2 32.8 354 250-634 48-476 (584)
83 3nmz_A APC variant protein; pr 98.0 0.0027 9.3E-08 71.8 28.1 231 263-550 212-452 (458)
84 2db0_A 253AA long hypothetical 97.9 0.0028 9.5E-08 61.0 22.9 216 396-634 29-246 (253)
85 2of3_A ZYG-9; multifunctional 97.9 0.00044 1.5E-08 72.0 18.7 180 449-643 58-244 (266)
86 1xqr_A HSPBP1 protein; armadil 97.9 0.00025 8.5E-09 75.7 17.4 151 75-228 82-238 (296)
87 3nmw_A APC variant protein; AR 97.9 0.0014 4.7E-08 71.8 22.5 230 128-433 96-338 (354)
88 1te4_A Conserved protein MTH18 97.8 6.2E-06 2.1E-10 76.9 2.6 117 73-222 11-127 (131)
89 3oc3_A Helicase MOT1, MOT1; re 97.8 0.00044 1.5E-08 77.3 16.7 243 155-462 173-432 (800)
90 3oc3_A Helicase MOT1, MOT1; re 97.8 0.00017 5.9E-09 80.5 13.1 204 69-303 168-386 (800)
91 3opb_A SWI5-dependent HO expre 97.7 0.077 2.6E-06 63.0 36.1 228 357-589 457-728 (778)
92 3opb_A SWI5-dependent HO expre 97.7 0.15 5.3E-06 60.4 43.6 229 400-636 458-730 (778)
93 1te4_A Conserved protein MTH18 97.6 1.2E-05 4.2E-10 74.8 1.1 120 115-277 11-130 (131)
94 1vsy_5 Proteasome activator BL 97.6 0.016 5.4E-07 71.6 28.2 384 68-483 457-943 (997)
95 3grl_A General vesicular trans 97.5 0.038 1.3E-06 64.0 28.1 516 74-626 21-584 (651)
96 3nmw_A APC variant protein; AR 97.4 0.0053 1.8E-07 67.1 18.5 217 374-593 100-338 (354)
97 3l9t_A Putative uncharacterize 97.3 0.00076 2.6E-08 68.2 10.3 167 97-300 51-219 (240)
98 3b2a_A TON_1937, putative unch 97.2 0.012 4E-07 59.1 16.9 210 62-301 23-233 (265)
99 3tt9_A Plakophilin-2; cell adh 97.0 0.0097 3.3E-07 60.9 14.8 172 117-302 9-204 (233)
100 3tjz_B Coatomer subunit gamma; 96.9 0.0085 2.9E-07 65.2 14.2 239 116-421 104-345 (355)
101 3tjz_B Coatomer subunit gamma; 96.6 0.024 8.1E-07 61.6 15.0 312 117-497 27-343 (355)
102 1vsy_5 Proteasome activator BL 96.5 0.074 2.5E-06 65.7 20.3 336 262-638 519-928 (997)
103 4gmo_A Putative uncharacterize 95.7 4.7 0.00016 47.7 35.1 69 158-227 36-104 (684)
104 1vsy_4 Proteasome activator BL 95.6 5.5 0.00019 47.8 35.4 361 154-548 229-687 (799)
105 3b2a_A TON_1937, putative unch 95.3 0.99 3.4E-05 45.4 18.1 187 398-635 32-219 (265)
106 3l9t_A Putative uncharacterize 93.7 1.5 5.2E-05 44.2 15.4 138 355-508 69-208 (240)
107 4gmo_A Putative uncharacterize 93.5 0.75 2.6E-05 54.6 15.2 73 116-189 35-108 (684)
108 3u0r_A Apoptosis inhibitor 5; 93.4 6.2 0.00021 43.9 20.8 117 372-504 42-160 (507)
109 4atg_A TAF6; transcription, TF 92.9 5.5 0.00019 39.0 17.7 131 149-303 7-142 (196)
110 3o2t_A Symplekin; heat repeat, 91.5 7.2 0.00025 42.4 18.3 108 113-227 60-182 (386)
111 3gs3_A Symplekin, LD45768P; he 91.3 13 0.00044 38.1 19.1 110 113-227 50-172 (257)
112 3tt9_A Plakophilin-2; cell adh 91.0 6.8 0.00023 39.6 16.6 111 76-187 10-125 (233)
113 4atg_A TAF6; transcription, TF 89.6 12 0.00043 36.5 16.3 88 500-587 68-160 (196)
114 1w9c_A CRM1 protein, exportin 89.4 11 0.00037 39.9 16.8 124 514-637 68-199 (321)
115 3grl_A General vesicular trans 88.9 7.6 0.00026 45.0 16.5 196 436-635 19-242 (651)
116 1lrv_A LRV, leucine-rich repea 88.1 0.29 9.8E-06 50.3 3.6 39 163-220 200-238 (244)
117 1w9c_A CRM1 protein, exportin 82.2 13 0.00044 39.3 12.9 146 74-219 69-237 (321)
118 1vsy_4 Proteasome activator BL 80.9 1E+02 0.0035 36.9 27.4 258 150-417 332-675 (799)
119 1upk_A MO25 protein; transfera 75.1 89 0.003 33.1 17.7 133 95-227 139-282 (341)
120 1lrv_A LRV, leucine-rich repea 74.7 2.7 9.3E-05 42.9 4.9 16 260-275 226-241 (244)
121 1lsh_A Lipovitellin (LV-1N, LV 71.6 8 0.00027 48.2 9.0 111 531-652 407-524 (1056)
122 2npp_B PP2A, B subunit, serine 70.3 1.2E+02 0.004 33.6 16.9 228 157-430 162-400 (449)
123 3gs3_A Symplekin, LD45768P; he 67.2 1.1E+02 0.0039 31.0 18.8 117 516-636 50-175 (257)
124 3ldz_A STAM-1, signal transduc 66.5 47 0.0016 30.4 11.0 108 520-639 10-119 (140)
125 1sz9_A PCF11 protein; RNA poly 63.4 23 0.00078 32.8 8.2 74 515-588 39-113 (144)
126 3o2t_A Symplekin; heat repeat, 63.3 81 0.0028 34.1 13.7 122 154-281 60-184 (386)
127 3u0r_A Apoptosis inhibitor 5; 62.3 2E+02 0.0067 32.0 25.8 183 449-654 40-225 (507)
128 1lsh_A Lipovitellin (LV-1N, LV 62.1 50 0.0017 41.0 13.4 177 71-284 388-580 (1056)
129 1upk_A MO25 protein; transfera 61.7 1.7E+02 0.0057 31.0 23.8 189 396-589 75-283 (341)
130 1x5b_A Signal transducing adap 54.1 1.2E+02 0.004 28.5 11.6 114 515-639 15-130 (163)
131 2b6c_A Hypothetical protein EF 50.4 56 0.0019 32.3 9.2 75 116-197 124-198 (220)
132 3g2s_A C-terminal fragment of 49.0 92 0.0031 28.8 9.7 111 526-644 22-137 (149)
133 1mhq_A ADP-ribosylation factor 49.0 90 0.0031 28.8 9.7 75 518-592 37-119 (148)
134 3g2s_A C-terminal fragment of 48.3 87 0.003 29.0 9.4 75 518-592 47-129 (149)
135 3s4w_B Protein FACD2, fanconi 48.0 3.8E+02 0.013 33.8 17.6 160 387-550 388-551 (1323)
136 3ldz_A STAM-1, signal transduc 47.1 56 0.0019 29.9 7.9 75 518-592 41-117 (140)
137 3zyq_A Hepatocyte growth facto 47.1 1E+02 0.0035 30.6 10.5 104 525-639 18-123 (226)
138 1x5b_A Signal transducing adap 45.2 62 0.0021 30.5 8.0 75 518-592 51-128 (163)
139 3s4w_B Protein FACD2, fanconi 43.5 6E+02 0.02 32.0 29.1 164 466-637 388-552 (1323)
140 3jxy_A Alkylpurine DNA glycosy 42.3 27 0.00094 34.9 5.4 76 117-199 132-207 (232)
141 1juq_A ADP-ribosylation factor 41.7 1E+02 0.0035 29.2 9.0 75 518-592 49-131 (171)
142 1vdy_A Hypothetical protein (R 40.9 1.1E+02 0.0038 28.0 8.7 95 127-226 23-128 (140)
143 1t06_A Hypothetical protein; s 40.2 59 0.002 32.5 7.5 69 115-185 107-179 (235)
144 2fv2_A RCD1 required for cell 40.0 2.1E+02 0.0071 29.1 11.2 117 60-186 50-174 (268)
145 1juq_A ADP-ribosylation factor 37.3 2.7E+02 0.0092 26.2 14.0 57 125-181 59-123 (171)
146 1dvp_A HRS, hepatocyte growth 37.0 1.9E+02 0.0065 28.4 10.6 103 526-639 16-120 (220)
147 2fv2_A RCD1 required for cell 36.3 2.7E+02 0.0092 28.2 11.3 98 122-220 57-166 (268)
148 3zyq_A Hepatocyte growth facto 32.9 1.1E+02 0.0039 30.3 8.2 75 518-592 44-121 (226)
149 2npp_B PP2A, B subunit, serine 32.6 5.3E+02 0.018 28.3 17.6 90 181-278 308-397 (449)
150 3ut4_A CTHE_2751, putative unc 31.0 2.6E+02 0.0089 25.3 9.3 84 348-447 22-105 (134)
151 3ebb_A Phospholipase A2-activa 30.2 4.8E+02 0.016 26.9 14.6 139 131-280 117-263 (304)
152 1vdy_A Hypothetical protein (R 29.7 1.1E+02 0.0038 27.9 6.8 73 513-590 7-79 (140)
153 1elk_A Target of MYB1; superhe 27.7 2.2E+02 0.0076 26.3 8.7 75 518-592 52-133 (157)
154 2jtt_C Calcyclin-binding prote 25.5 19 0.00063 24.8 0.5 19 4-22 15-33 (35)
155 1dvp_A HRS, hepatocyte growth 23.0 3.8E+02 0.013 26.1 9.9 72 518-592 41-118 (220)
156 3ut4_A CTHE_2751, putative unc 22.5 4.3E+02 0.015 23.8 11.7 83 247-371 28-110 (134)
157 3fga_B Serine/threonine-protei 21.1 8E+02 0.027 26.4 23.3 97 181-285 275-371 (403)
158 3d9j_A RNA-binding protein 16; 21.0 3E+02 0.01 25.0 8.1 73 515-587 38-117 (145)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=1.9e-29 Score=312.34 Aligned_cols=562 Identities=14% Similarity=0.157 Sum_probs=432.3
Q ss_pred hHHHHHHHhhh---cCCchHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhc-----hhhhhHHHHHHhhcCCCCH
Q 003081 59 TYKELCNLANE---MGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALK-----PHLRLLIPKLVRFQYDPDK 130 (850)
Q Consensus 59 tyk~l~~lA~~---~g~p~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~-----p~L~~lvp~L~r~~~Dp~~ 130 (850)
+...|..+|.. -.||+++..+..+.++. .+..|++|+.+|+.|++..++.+. .++..++|.|++.+.|+++
T Consensus 110 ~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~-~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~ 188 (852)
T 4fdd_A 110 VGILITTIASKGELQNWPDLLPKLCSLLDSE-DYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSP 188 (852)
T ss_dssp HHHHHHHHHHHTTTTTCTTHHHHHHHHHSCS-SHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCH
Confidence 33455555554 37899999999988775 488999999999999998865543 3478899999999999999
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhcc
Q 003081 131 NVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDD 210 (850)
Q Consensus 131 ~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD 210 (850)
.||.++..+...++...+.....+++.+++.++..++|++++||..+|.+|+.+.+..+ +.+.+|+..+++.++..+.|
T Consensus 189 ~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~-~~~~~~l~~l~~~l~~~~~~ 267 (852)
T 4fdd_A 189 KIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRM-DRLLPHMHNIVEYMLQRTQD 267 (852)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCH-HHHGGGHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHccC
Confidence 99999999888887655455666788999999999999999999999999999998654 66889999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHH-----------------HHHHhh------------hc----------ccCc-c---------
Q 003081 211 IKETVRTAGDKLCRSVTS-----------------LTIRLC------------DV----------TLTE-I--------- 241 (850)
Q Consensus 211 ~k~~VR~aA~~~~~~L~~-----------------~~~r~~------------~~----------~~~~-~--------- 241 (850)
..+.||..|...+.++++ .++... ++ ..-. .
T Consensus 268 ~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~ 347 (852)
T 4fdd_A 268 QDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDV 347 (852)
T ss_dssp SSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHH
Confidence 999999988766555432 111111 10 0000 0
Q ss_pred ---hhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhhh
Q 003081 242 ---SDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAAN 318 (850)
Q Consensus 242 ---~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~ 318 (850)
.....+++.++|++.+ .+.++++.+|..++.+++.+++.++..+.||+++++|.++..+++.+|.+..-..+..+.
T Consensus 348 la~~~~~~~~~~l~~~l~~-~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~ 426 (852)
T 4fdd_A 348 LANVYRDELLPHILPLLKE-LLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSR 426 (852)
T ss_dssp HHHHHGGGGHHHHHHHHHH-HHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 0012345667887763 466788999999999999999998888999999999999999998776654323222221
Q ss_pred cccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHH
Q 003081 319 AGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTS 398 (850)
Q Consensus 319 ~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~ 398 (850)
+. +.+-.......+..++|.+.+.+++. ....|..++..+..++..++..+.||.+
T Consensus 427 l~-----------------------~~~~~~~~~~~~~~ll~~L~~~L~d~-~~~vr~~a~~aL~~l~~~~~~~l~~~l~ 482 (852)
T 4fdd_A 427 YA-----------------------HWVVSQPPDTYLKPLMTELLKRILDS-NKRVQEAACSAFATLEEEACTELVPYLA 482 (852)
T ss_dssp TH-----------------------HHHHHSCTTTTHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHGGGGGGGHH
T ss_pred HH-----------------------HHhccchHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHhhHhhHhHHH
Confidence 10 00111112345678899999988765 4567889999999999999999999999
Q ss_pred HHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCC-----HHHHHHHHHHHHHhhc----CCchhhHHHHHHHHHHHhhch
Q 003081 399 MLLRLLFPVVKEEKSAAAKRAFASACASVLKYAT-----PSQAQKLIEETAALHI----DDKNSQISCAILLKSYSSVAS 469 (850)
Q Consensus 399 ~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~-----~~~v~~li~~l~~~~~----~d~~~r~~~~~~l~al~~~~~ 469 (850)
.+++.++..+ ++.+.........+++.++...+ ++.+..+++.+.+.+. ++++.+ .+..+++.+++..+
T Consensus 483 ~ll~~L~~~l-~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g 560 (852)
T 4fdd_A 483 YILDTLVFAF-SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQ 560 (852)
T ss_dssp HHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHG
T ss_pred HHHHHHHHHH-HHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHh
Confidence 9999999999 55555555667788888875433 3456677777765542 233344 56788888888888
Q ss_pred hhhhhhHhhHhHHHHHHhc-----------------CCchHHHHHHHHHHHHhcCCChhhHHhhH--HHHHHHHHHhhcC
Q 003081 470 DVLSGYHAVIVPVIFISRF-----------------EDDKYVSDLFEELWEENTSGDRVTLQLYL--GEIVSLICEGIAS 530 (850)
Q Consensus 470 ~~f~~~~~~vlP~l~~~~~-----------------d~~~~v~~~~~~v~~~l~~~~~~~i~~yl--~eIl~ll~~~L~d 530 (850)
..|.+|.+.++|.+..... .++.+++....+.++.++.+.+..+.+|+ +.+++++..++.|
T Consensus 561 ~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~ 640 (852)
T 4fdd_A 561 SGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQD 640 (852)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCC
Confidence 8999999988885432110 12455776667777777777767788998 7899999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHH
Q 003081 531 SSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMV 610 (850)
Q Consensus 531 ~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l 610 (850)
++..+|+.+..++++++..+|..+.+|++.++|.+.+.+....++.|..+..+++.++...+..+ .+|++.+++.+
T Consensus 641 ~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~----~p~~~~il~~L 716 (852)
T 4fdd_A 641 KMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEM----QPYIPMVLHQL 716 (852)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGG----GGGTHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhH----HHHHHHHHHHH
Confidence 99999999999999999999999999999999999999977778899999999999998876544 46888999988
Q ss_pred HHHHhhc--CHHHHHHHHHHHHHHHHHcCC---chhHHhHHHHHHhhc
Q 003081 611 SSACRKK--IKKYREAAFSCLEQVIKAFRD---PKFFNIIFPLLFEMC 653 (850)
Q Consensus 611 ~~e~~r~--~~~~R~~Al~~Lg~l~~~~~~---~~~~~iv~~~l~~~~ 653 (850)
++-++.. ...++..|+.++|++....+. +.+.+++.+++..+.
T Consensus 717 ~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~ 764 (852)
T 4fdd_A 717 VEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLR 764 (852)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhc
Confidence 8887654 468999999999999998653 345677777777664
No 2
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=7.4e-29 Score=306.32 Aligned_cols=679 Identities=12% Similarity=0.096 Sum_probs=470.5
Q ss_pred ChhhHHHHHHHHHHHhccCcccccccccccCcccccCCcccccCCCCccchHHHHHHHhhh----cCCchHHHHHHHHhc
Q 003081 9 DASMKQNLVDALVTTLTGSGKRKRTVKLAEDSEVFQEGAIGEGLGGGKLSTYKELCNLANE----MGQPDLIYKFMDLAN 84 (850)
Q Consensus 9 ~~~~~~~lv~~l~~~~~~~~~~~~~~~~~~~t~lf~~g~~~~~~~g~~~styk~l~~lA~~----~g~p~lv~~fm~la~ 84 (850)
+++.|+.+-..|++.+.......+ ......|..++.. -.||++++.++....
T Consensus 89 ~~~~~~~ik~~ll~~l~~~~~~vr------------------------~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~ 144 (861)
T 2bpt_A 89 SPEAKNQIKTNALTALVSIEPRIA------------------------NAAAQLIAAIADIELPHGAWPELMKIMVDNTG 144 (861)
T ss_dssp CHHHHHHHHHHHHHHHTCSSHHHH------------------------HHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHHCCCchHHH------------------------HHHHHHHHHHHHhhCcccccHHHHHHHHHHHh
Confidence 456677777777776654332110 1222334444443 268999999999987
Q ss_pred cchhhhhhhhHHhhHHHHHHHhhhh---hchhhhhHHHHHHhhcCCC--CHhHHHHHHHHHHHhccCChHHH--HHHHHH
Q 003081 85 YQVSLNSKRGAAFGFSKIAKQAGDA---LKPHLRLLIPKLVRFQYDP--DKNVQDAMAHIWKSLVADPKRTI--DEHLDL 157 (850)
Q Consensus 85 ~~~~w~sr~gAa~gl~~I~~~~~~~---l~p~L~~lvp~L~r~~~Dp--~~~VR~a~~~iw~~Lv~d~~~~i--~~~~~~ 157 (850)
+...+..|++|+..++.|++..+.. +.++.+.++|.+.....|+ ++.||.++..++..++.-..... ....+.
T Consensus 145 ~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ 224 (861)
T 2bpt_A 145 AEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNY 224 (861)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHH
Confidence 7535788999999999999876544 6789999999999999998 89999999999888764221111 112345
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHH-HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhc
Q 003081 158 IFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLR-RIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDV 236 (850)
Q Consensus 158 Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~-~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~ 236 (850)
+++.|...+.+++|++|+.+|.+++.+++..+ +.+.+|+. .+++.++..+.|..+.||..|...+..++......-..
T Consensus 225 ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 303 (861)
T 2bpt_A 225 LMQVVCEATQAEDIEVQAAAFGCLCKIMSKYY-TFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYE 303 (861)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHG-GGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 78888888899999999999999999998654 56788999 99999999999999999999988777776542110000
Q ss_pred cc-------CcchhHHhHHHHhHHHHhhccCC-------CchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhcc
Q 003081 237 TL-------TEISDARQSMDIVLPFLLAEGIL-------SKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLS 302 (850)
Q Consensus 237 ~~-------~~~~~~~~~l~~lLP~Ll~~gL~-------s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls 302 (850)
.. ..+.....++..++|.|+. .+. ++.+.+|..+..++..++...|. ..++.++|.+.+.+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~il~~ll~-~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~---~~~~~l~~~l~~~l~ 379 (861)
T 2bpt_A 304 LAQFPQSPLQSYNFALSSIKDVVPNLLN-LLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN---HILEPVLEFVEQNIT 379 (861)
T ss_dssp HHHCTTCSCCCCCHHHHHHHHHHHHHHH-HTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTT
T ss_pred hhhccCCchhhHHHHHHHHHHHHHHHHH-HHHhcccccccccCcHHHHHHHHHHHHHHHccH---hHHHHHHHHHHHHcC
Confidence 00 0011234466788888874 232 23468999999999999998885 467888999988887
Q ss_pred ccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcC----hhhHhhHHHHHHHHHhccCCCchHhhH
Q 003081 303 SLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVD----TESLDQLVPHLARLVRSGIGLNTRVGV 378 (850)
Q Consensus 303 ~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld----~~~l~~lvp~L~~~lk~~~~~~tr~~a 378 (850)
+.++.... .+ ..++..+..... ...++.++|.+...+++. ....|..+
T Consensus 380 ~~~~~~r~---------------------~a------~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~-~~~vr~~a 431 (861)
T 2bpt_A 380 ADNWRNRE---------------------AA------VMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQ-SLQVKETT 431 (861)
T ss_dssp CSSHHHHH---------------------HH------HHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCS-CHHHHHHH
T ss_pred CCChhHHH---------------------HH------HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCC-cHHHHHHH
Confidence 54432211 00 012222222211 123567788888887765 45578888
Q ss_pred HHHHHHHHHHhcccc--cchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCH---H----HHHHHHHHHHHhhc-
Q 003081 379 ASFISLLVQKIGMDI--KPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATP---S----QAQKLIEETAALHI- 448 (850)
Q Consensus 379 ~~~l~~L~~~~~~~~--~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~---~----~v~~li~~l~~~~~- 448 (850)
+.+++.++...+..+ .+|.+.+++.++..+ .|. +.||..++.+++.+++.+++ . .+..+++.+.....
T Consensus 432 ~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l-~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~ 509 (861)
T 2bpt_A 432 AWCIGRIADSVAESIDPQQHLPGVVQACLIGL-QDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANR 509 (861)
T ss_dssp HHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHH-TSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHh-ccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhC
Confidence 999999988887765 679999999999999 565 89999999999999887542 2 34455555555553
Q ss_pred CC--chhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcC---------------CchHHHHHHHHHHHHhcCCChh
Q 003081 449 DD--KNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFE---------------DDKYVSDLFEELWEENTSGDRV 511 (850)
Q Consensus 449 ~d--~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d---------------~~~~v~~~~~~v~~~l~~~~~~ 511 (850)
.| ++.|..+..+++.+....++.+.+|...++|.++....+ ....++....+.+..++.+.+.
T Consensus 510 ~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 589 (861)
T 2bpt_A 510 IDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS 589 (861)
T ss_dssp SCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred cCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 23 566888999999999999888889999999988754321 1234666677777777776666
Q ss_pred hHHhhHHHHHHHHHHhhcCCCH-HHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHh
Q 003081 512 TLQLYLGEIVSLICEGIASSSW-SSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTS 590 (850)
Q Consensus 512 ~i~~yl~eIl~ll~~~L~d~s~-~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~ 590 (850)
.+.+|++.+++.+...+++.++ .+|..+..+++.++...|..+.+|++.++|.|.+.+..+.+..|...+.+++.++..
T Consensus 590 ~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~ 669 (861)
T 2bpt_A 590 SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNS 669 (861)
T ss_dssp GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999888 899999999999999999999999999999999999877889999999999999988
Q ss_pred cccccccCCCCchHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHHcCCc--hhHHhHHHHHHhhcccccccCCCCCCC
Q 003081 591 CHKDISAEDPTTPFAIVDMVSSACRKKI--KKYREAAFSCLEQVIKAFRDP--KFFNIIFPLLFEMCGSTALNKSGQVPL 666 (850)
Q Consensus 591 ~~~~l~~~~~~~~~~i~~~l~~e~~r~~--~~~R~~Al~~Lg~l~~~~~~~--~~~~iv~~~l~~~~~~~~~~~~~~~~~ 666 (850)
++..+ .++.+.+++.+...+...+ ..+|..++.++|.++..++.. .+.+.+.|.+....+... .
T Consensus 670 ~~~~~----~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~-~------- 737 (861)
T 2bpt_A 670 LEEDF----RRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKP-E------- 737 (861)
T ss_dssp TGGGG----HHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCC-S-------
T ss_pred hchhc----cchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCC-C-------
Confidence 77543 3578889999888887654 789999999999999998653 234455555555443110 0
Q ss_pred CCCCcccchhhhcccccHHHHHHhhhhhccccccccHHHHHHHHHHHHHhhcCCCC----CchHHHHHHHHHHHHHHHH-
Q 003081 667 PSDASKEESADESVSAPLDKVLDCVSSCIHVAHVNDIIEQEKNLVQLFTISLSPGF----PWTVKMSAFSSIKELCSRL- 741 (850)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~- 741 (850)
.+|....+.....|...++ .++.+...+|.. +.........+.+. +.+.+.+. .+.||.+++.++..++..+
T Consensus 738 ~~d~d~~~~~~~vr~~~l~-~~~~i~~~l~~~-~~~~~~~~~~i~~~-l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~ 814 (861)
T 2bpt_A 738 NGTLEALDYQIKVLEAVLD-AYVGIVAGLHDK-PEALFPYVGTIFQF-IAQVAEDPQLYSEDATSRAAVGLIGDIAAMFP 814 (861)
T ss_dssp SSSHHHHHHHHHHHHHHHH-HHHHHHHHTTTC-HHHHGGGHHHHHHH-HHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCT
T ss_pred CCChHHHHHHHHHHHHHHH-HHHHHHHHHccC-HHHHHHHHHHHHHH-HHHHHcCcccCCcHHHHHHHHHHHHHHHHHcC
Confidence 0000000111113333333 333344444421 10000001111212 23333342 8999999999999998876
Q ss_pred hhcccCCCCCCCCcChh-HHHHHHHHhhC
Q 003081 742 QKTLDDSAGTSPHAGIS-SLIQELFHTVS 769 (850)
Q Consensus 742 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ 769 (850)
.. ....... .++..++..++
T Consensus 815 g~--------~~~~~~~~~~~~~ll~~l~ 835 (861)
T 2bpt_A 815 DG--------SIKQFYGQDWVIDYIKRTR 835 (861)
T ss_dssp TS--------TTGGGTTCHHHHHHHHHHH
T ss_pred Cc--------hHHHHHhcHHHHHHHHHHh
Confidence 22 1233334 55666665543
No 3
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.97 E-value=3.2e-28 Score=300.69 Aligned_cols=540 Identities=12% Similarity=0.095 Sum_probs=412.0
Q ss_pred cchHHHHHHHhhhcC--------CchHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhchhhh-hHHHHHHhhcCC
Q 003081 57 LSTYKELCNLANEMG--------QPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLR-LLIPKLVRFQYD 127 (850)
Q Consensus 57 ~styk~l~~lA~~~g--------~p~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L~-~lvp~L~r~~~D 127 (850)
.++-+++..+...++ ++.++..+..+..+ ..|..|++|+-.|+.+++..++.+.||+. .+++.+.....|
T Consensus 199 ~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~ 277 (861)
T 2bpt_A 199 LAALNALADSLIFIKNNMEREGERNYLMQVVCEATQA-EDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKS 277 (861)
T ss_dssp HHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTC-SCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345566665543222 12344444444433 35899999999999999999889999999 999999999999
Q ss_pred CCHhHHHHHHHHHHHhccCCh-----------------HHHHHHHHHHHHHHHHhhCC-------CChhHHHHHHHHHHH
Q 003081 128 PDKNVQDAMAHIWKSLVADPK-----------------RTIDEHLDLIFDDLLIQSGS-------RLWRSREASCLSLAD 183 (850)
Q Consensus 128 p~~~VR~a~~~iw~~Lv~d~~-----------------~~i~~~~~~Il~~Ll~~l~~-------~~wRVReaa~~Al~~ 183 (850)
+++.||..+..+|..++.... ..+..++..+++.++..+.+ .+|.+|.+++.+++.
T Consensus 278 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~ 357 (861)
T 2bpt_A 278 PNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQL 357 (861)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHH
Confidence 999999999999999885321 13456778899999988864 469999999999999
Q ss_pred HHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCc
Q 003081 184 IIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSK 263 (850)
Q Consensus 184 Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~ 263 (850)
+....+ + ..++.+++.+...+.|.+..+|++|..++..++. .+. +....+++..++|.|+ ..+.++
T Consensus 358 l~~~~~-~---~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~----~~~-----~~~~~~~l~~il~~l~-~~l~d~ 423 (861)
T 2bpt_A 358 FAQNCG-N---HILEPVLEFVEQNITADNWRNREAAVMAFGSIMD----GPD-----KVQRTYYVHQALPSIL-NLMNDQ 423 (861)
T ss_dssp HHHHHG-G---GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS----SSC-----HHHHHHHHHHHHHHHH-HGGGCS
T ss_pred HHHHcc-H---hHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHc----CCC-----HHHHHHHHHHHHHHHH-HHcCCC
Confidence 987543 2 3456777777788888889999998655444321 111 1223457788899888 457778
Q ss_pred hhHHHHHHHHHHHHHHHhcCccc--ccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHH
Q 003081 264 VDSISKASIGVVMKLVKGAGIAI--RPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWD 341 (850)
Q Consensus 264 ~~evr~~a~~~L~~la~~~g~~l--~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~e 341 (850)
.+.||..++.+++.++...++.+ .+|++.++|.++..+++. |.+..+.+ .
T Consensus 424 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~---------------------------~ 475 (861)
T 2bpt_A 424 SLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCS---------------------------W 475 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHH---------------------------H
T ss_pred cHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHH---------------------------H
Confidence 89999999999999999887765 689999999999999763 43322111 1
Q ss_pred HHHHHHhhcC-------hhhHhhHHHHHHHHHhccC-CCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhh---
Q 003081 342 TLDLCINVVD-------TESLDQLVPHLARLVRSGI-GLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKE--- 410 (850)
Q Consensus 342 al~~~~~~ld-------~~~l~~lvp~L~~~lk~~~-~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~--- 410 (850)
++..+++..+ ...++.++|.+...+++.. ....|..++.++..++...+..+.||.+.+++.++..+..
T Consensus 476 al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 555 (861)
T 2bpt_A 476 TIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMS 555 (861)
T ss_dssp HHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHh
Confidence 2222222211 1345778888888887531 2567889999999999999999999999999988888731
Q ss_pred -----------cCcHHHHHHHHHHHHHHhhhCCHH---HHHHHHHHHHHhhc-CCc-hhhHHHHHHHHHHHhhchhhhhh
Q 003081 411 -----------EKSAAAKRAFASACASVLKYATPS---QAQKLIEETAALHI-DDK-NSQISCAILLKSYSSVASDVLSG 474 (850)
Q Consensus 411 -----------D~n~~Vr~~~a~alg~L~~~~~~~---~v~~li~~l~~~~~-~d~-~~r~~~~~~l~al~~~~~~~f~~ 474 (850)
+....++..+..+++.+++..+.. .+..+++.+...+. .+. ..|..+..+++.++...++.|.+
T Consensus 556 ~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~ 635 (861)
T 2bpt_A 556 VDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEK 635 (861)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHH
T ss_pred hhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHH
Confidence 224567888899999999877653 34556666666554 233 56888888999999999999999
Q ss_pred hHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHHHHhCc
Q 003081 475 YHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSS--WSSKRKSAKAICKLGEILGE 552 (850)
Q Consensus 475 ~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s--~~vr~~aa~alg~la~~~g~ 552 (850)
|++.++|.++....+.++.++..+.+++..++...+..+.+|++.+++.+...+.+++ +++|..+..++|.++..+|+
T Consensus 636 ~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~ 715 (861)
T 2bpt_A 636 YLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA 715 (861)
T ss_dssp HHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhh
Confidence 9999999998777666777888888888887776666789999999999999998875 89999999999999999999
Q ss_pred chhhhHHHHHHHHHHhcCCCC-----------hhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhc----
Q 003081 553 SLSNYHHVLLESIMKEVPGRL-----------WEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKK---- 617 (850)
Q Consensus 553 ~l~~~l~~llp~L~~~L~~r~-----------~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~---- 617 (850)
.|.+|++.++|.+.+.+.... +..|+.++++++.++...+.. .....++++.+++.+.+.+.+.
T Consensus 716 ~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~-~~~~~~~~~~i~~~l~~~~~d~~~~~ 794 (861)
T 2bpt_A 716 DFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDK-PEALFPYVGTIFQFIAQVAEDPQLYS 794 (861)
T ss_dssp GGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTC-HHHHGGGHHHHHHHHHHHHHCHHHHT
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHHHHHcCcccCC
Confidence 999999999999999886421 457899999999999876631 0112467888888888877653
Q ss_pred CHHHHHHHHHHHHHHHHHcCCch
Q 003081 618 IKKYREAAFSCLEQVIKAFRDPK 640 (850)
Q Consensus 618 ~~~~R~~Al~~Lg~l~~~~~~~~ 640 (850)
+..+|..|+.+++.++..+++.+
T Consensus 795 ~~~vr~~a~~~l~~l~~~~~g~~ 817 (861)
T 2bpt_A 795 EDATSRAAVGLIGDIAAMFPDGS 817 (861)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTST
T ss_pred cHHHHHHHHHHHHHHHHHcCCch
Confidence 88999999999999999994333
No 4
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.97 E-value=2.9e-27 Score=292.66 Aligned_cols=563 Identities=13% Similarity=0.108 Sum_probs=401.9
Q ss_pred hHHHHHHHhhh----cCCchHHHHHHHHhccch-hhhhhhhHHhhHHHHHHHh-hhhhchhhhhHHHHHHhhcCCC--CH
Q 003081 59 TYKELCNLANE----MGQPDLIYKFMDLANYQV-SLNSKRGAAFGFSKIAKQA-GDALKPHLRLLIPKLVRFQYDP--DK 130 (850)
Q Consensus 59 tyk~l~~lA~~----~g~p~lv~~fm~la~~~~-~w~sr~gAa~gl~~I~~~~-~~~l~p~L~~lvp~L~r~~~Dp--~~ 130 (850)
.-..|..++.. -.||++++.++...++.. .+..|++++.+|+.+++.. ++.+.++++.++|.|..+..|+ ++
T Consensus 109 ~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~ 188 (876)
T 1qgr_A 109 ASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSN 188 (876)
T ss_dssp HHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCH
T ss_pred HHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCH
Confidence 33445555543 458999999999887652 4788999999999999876 5678899999999999999998 79
Q ss_pred hHHHHHHHHHHHhccCChHHHH--HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHH-HHHHHHHHH
Q 003081 131 NVQDAMAHIWKSLVADPKRTID--EHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLR-RIWTAAFRA 207 (850)
Q Consensus 131 ~VR~a~~~iw~~Lv~d~~~~i~--~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~-~i~~~l~~~ 207 (850)
.||..+..+...++......+. ...+.+++.+...+.+.++++|.+++.+++.+++..+ +.+.+|+. .+++.++..
T Consensus 189 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~l~~~~~~~ 267 (876)
T 1qgr_A 189 NVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY-QYMETYMGPALFAITIEA 267 (876)
T ss_dssp HHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSG-GGCHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHH
Confidence 9999999998887753221111 1113478888888888999999999999999997544 45788998 999999998
Q ss_pred hccCcHHHHHHHHHHHHHHHHHH------------------------------------HHhhhcc-------cCc----
Q 003081 208 MDDIKETVRTAGDKLCRSVTSLT------------------------------------IRLCDVT-------LTE---- 240 (850)
Q Consensus 208 ldD~k~~VR~aA~~~~~~L~~~~------------------------------------~r~~~~~-------~~~---- 240 (850)
+.|..+.||..|...+..+.+.. ++.+... .-.
T Consensus 268 ~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~ 347 (876)
T 1qgr_A 268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKA 347 (876)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHH
Confidence 88888999988876665554321 1111000 000
Q ss_pred ---------chhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcC-cccccchHHHHHHHHHhccccchhhhh
Q 003081 241 ---------ISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAG-IAIRPHLSDLVSCMLESLSSLEDQGLN 310 (850)
Q Consensus 241 ---------~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g-~~l~P~lp~Lvp~LL~~Ls~~ep~~~n 310 (850)
......++..++|++. ..+.+.+|.+|..++.+++.++...+ ..+.||++.++|.++..+.+..+.+..
T Consensus 348 a~~~l~~l~~~~~~~~~~~~l~~l~-~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~ 426 (876)
T 1qgr_A 348 AGVCLMLLATCCEDDIVPHVLPFIK-EHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRD 426 (876)
T ss_dssp HHHHHHHHHHHHGGGGHHHHHHHHH-HHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHH
T ss_pred HHHHHHHHHHHCcHhhHHHHHHHHH-HHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 0001124556677665 35667788999999999999987776 557789999999999999876655433
Q ss_pred HHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhc-----ChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHH
Q 003081 311 YIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVV-----DTESLDQLVPHLARLVRSGIGLNTRVGVASFISLL 385 (850)
Q Consensus 311 yl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~l-----d~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L 385 (850)
...+ ++..+.... ..+.++.++|.+...+++. ...|..++..+..+
T Consensus 427 ~a~~---------------------------~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~--~~v~~~a~~al~~l 477 (876)
T 1qgr_A 427 TAAW---------------------------TVGRICELLPEAAINDVYLAPLLQCLIEGLSAE--PRVASNVCWAFSSL 477 (876)
T ss_dssp HHHH---------------------------HHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC--HHHHHHHHHHHHHH
T ss_pred HHHH---------------------------HHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHH
Confidence 2222 233222221 1244667777777777652 34566777777777
Q ss_pred HHHhc--------------ccccchHHHHHHHHHHhhhhcC---cHHHHHHHHHH-------------------------
Q 003081 386 VQKIG--------------MDIKPYTSMLLRLLFPVVKEEK---SAAAKRAFASA------------------------- 423 (850)
Q Consensus 386 ~~~~~--------------~~~~py~~~lL~~Ll~~l~~D~---n~~Vr~~~a~a------------------------- 423 (850)
+..++ ..+.||.+.+++.++..+ .+. +..+|..+..+
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l-~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~ 556 (876)
T 1qgr_A 478 AEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETT-DRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIME 556 (876)
T ss_dssp HHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHT-TSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHH
T ss_pred HHHhhhccccccccccccchhhhHhHHHHHHHHHHHH-hCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHH
Confidence 76654 347788888888887776 322 22344444444
Q ss_pred -------------------------------HHHHhhhCCHHHH----HHHHHHHHHhhcCC---chhhHHHHHHHHHHH
Q 003081 424 -------------------------------CASVLKYATPSQA----QKLIEETAALHIDD---KNSQISCAILLKSYS 465 (850)
Q Consensus 424 -------------------------------lg~L~~~~~~~~v----~~li~~l~~~~~~d---~~~r~~~~~~l~al~ 465 (850)
++.+++..+.+.+ ..+++.+...+... ...|..+..+++.++
T Consensus 557 ~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~ 636 (876)
T 1qgr_A 557 RLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLV 636 (876)
T ss_dssp HHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHH
Confidence 4444444441112 22333333333221 245777888899999
Q ss_pred hhchhhhhhhHhhHhHHHHHHhcCC-chHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcC--CCHHHHHHHHHH
Q 003081 466 SVASDVLSGYHAVIVPVIFISRFED-DKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIAS--SSWSSKRKSAKA 542 (850)
Q Consensus 466 ~~~~~~f~~~~~~vlP~l~~~~~d~-~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d--~s~~vr~~aa~a 542 (850)
...+..|.+|.+.++|.++....+. ++.+|..+.+++..++...+..+.+|++++++.+...+.+ .+.++|..+..+
T Consensus 637 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~ 716 (876)
T 1qgr_A 637 EVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSV 716 (876)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHH
Confidence 8888899999999999988776654 6779988888888887766667899999999999999987 467899999999
Q ss_pred HHHHHHHhCcchhhhHHHHHHHHHHhcCCCC-----------hhhHHHHHHHHHHHHHhccccc------ccCCCCchHH
Q 003081 543 ICKLGEILGESLSNYHHVLLESIMKEVPGRL-----------WEGKDALLYAIGSISTSCHKDI------SAEDPTTPFA 605 (850)
Q Consensus 543 lg~la~~~g~~l~~~l~~llp~L~~~L~~r~-----------~~gKe~vL~aL~~l~~~~~~~l------~~~~~~~~~~ 605 (850)
+|.++..+|..+.+|++.++|.|.+.+..+. ...|+.+++++..++...+... .....+|++.
T Consensus 717 l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 796 (876)
T 1qgr_A 717 FGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEF 796 (876)
T ss_dssp HHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHH
T ss_pred HHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHH
Confidence 9999999999999999999999999987653 2679999999999988765421 0123568899
Q ss_pred HHHHHHHHHhhc--CHHHHHHHHHHHHHHHHHcCCchh-----HHhHHHHHHhhc
Q 003081 606 IVDMVSSACRKK--IKKYREAAFSCLEQVIKAFRDPKF-----FNIIFPLLFEMC 653 (850)
Q Consensus 606 i~~~l~~e~~r~--~~~~R~~Al~~Lg~l~~~~~~~~~-----~~iv~~~l~~~~ 653 (850)
+++.+...+.+. +..+|..|+.|||.++..++.+.+ ..++.|++.+..
T Consensus 797 i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l 851 (876)
T 1qgr_A 797 ILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGR 851 (876)
T ss_dssp HHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHh
Confidence 998887776665 789999999999999999976233 245667776343
No 5
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.97 E-value=9.6e-28 Score=297.01 Aligned_cols=645 Identities=13% Similarity=0.111 Sum_probs=447.4
Q ss_pred hhhhhhHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHH-----HHHHHHHHHH
Q 003081 89 LNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDE-----HLDLIFDDLL 163 (850)
Q Consensus 89 w~sr~gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~-----~~~~Il~~Ll 163 (850)
..-|+.++..++.|+.... ....+.++|.|.....++++.+|+.+..+...++.+.+...+. +++.+++.++
T Consensus 104 ~~vr~~~a~~i~~ia~~~~---~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~ 180 (852)
T 4fdd_A 104 PLIRATVGILITTIASKGE---LQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFL 180 (852)
T ss_dssp HHHHHHHHHHHHHHHHHTT---TTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcC---ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHH
Confidence 3567777788888877542 2356789999999999999999999998888887553332221 2788999999
Q ss_pred HhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchh
Q 003081 164 IQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISD 243 (850)
Q Consensus 164 ~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~ 243 (850)
+.+.++++.||.+|+.+++.++...+ ..+.++++.+++.++..+.|..+.||..|...+..+.+... ..
T Consensus 181 ~~l~~~~~~vR~~A~~aL~~~~~~~~-~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~----------~~ 249 (852)
T 4fdd_A 181 QFFKHSSPKIRSHAVACVNQFIISRT-QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRM----------DR 249 (852)
T ss_dssp TTTTCSSHHHHHHHHHHHHTTTTTTC-HHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCH----------HH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCH----------HH
Confidence 99999999999999999999987654 45778888999999999999999999988766555543221 12
Q ss_pred HHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHh--cCcccccchHHHHHHHHHhccccchhhhhHHHHhhhhccc
Q 003081 244 ARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKG--AGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGI 321 (850)
Q Consensus 244 ~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~--~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~ 321 (850)
..+++..++|+++. .+.+..++||..++++|..+++. ....++||++.++|.++..+...+.+. .+.....+....
T Consensus 250 ~~~~l~~l~~~l~~-~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~-~~~~~d~~ed~~ 327 (852)
T 4fdd_A 250 LLPHMHNIVEYMLQ-RTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDI-ILLKGDVEGGSG 327 (852)
T ss_dssp HGGGHHHHHHHHHH-HHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHH-HHHHC-------
T ss_pred HHHHHHHHHHHHHH-HccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHH-HHhcCCcccccc
Confidence 33467778888873 56677789999999999999874 345579999999999999996443221 111100000000
Q ss_pred chh--hhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHH
Q 003081 322 QTE--KLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSM 399 (850)
Q Consensus 322 ~~d--~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~ 399 (850)
++| .--..|..+ ..++..+....++..++.++|.+.+.+++. .+..|.+++..++.++..++..+.||.+.
T Consensus 328 ~dd~~~~~~vr~~a------~~~L~~la~~~~~~~~~~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~~l~~ 400 (852)
T 4fdd_A 328 GDDTISDWNLRKCS------AAALDVLANVYRDELLPHILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPYLPE 400 (852)
T ss_dssp -----CCCCHHHHH------HHHHHHHHHHHGGGGHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGGGHHH
T ss_pred cccccccchHHHHH------HHHHHHHHHhccHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 000 000123222 345666666666677888999999999875 68889999999999988887788899999
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCH----HHHHHHHHHHHHhhc-CCchhhHHHHHHHHHHHhhchhhhhh
Q 003081 400 LLRLLFPVVKEEKSAAAKRAFASACASVLKYATP----SQAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSG 474 (850)
Q Consensus 400 lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~----~~v~~li~~l~~~~~-~d~~~r~~~~~~l~al~~~~~~~f~~ 474 (850)
+++.+++.+ .|+++.||.+++.++|.+....+. ..+..+++.+.+.+. .++..|..++.++..+++.+++.+.+
T Consensus 401 ~l~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~ 479 (852)
T 4fdd_A 401 LIPHLIQCL-SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVP 479 (852)
T ss_dssp HHHHHHHHT-TCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHh
Confidence 999999999 799999999999999998875432 345566677766664 35667889999999999888888899
Q ss_pred hHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhH--HhhHHHHHHHHHH---hhcCCCHHHHHHHHHHHHHHHHH
Q 003081 475 YHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTL--QLYLGEIVSLICE---GIASSSWSSKRKSAKAICKLGEI 549 (850)
Q Consensus 475 ~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i--~~yl~eIl~ll~~---~L~d~s~~vr~~aa~alg~la~~ 549 (850)
|.+.++|.+................+....++...+..+ ..|++.+++.+.. .+.+++..++ .+..+++.++..
T Consensus 480 ~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~ 558 (852)
T 4fdd_A 480 YLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATA 558 (852)
T ss_dssp GHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHH
Confidence 999999988765443333333333333333332222222 3588888888874 4567777775 788999999999
Q ss_pred hCcchhhhHHHHHHHHHHhcCC-----------------CChhhHHHHHHHHHHHHHhcccccccCCCCch--HHHHHHH
Q 003081 550 LGESLSNYHHVLLESIMKEVPG-----------------RLWEGKDALLYAIGSISTSCHKDISAEDPTTP--FAIVDMV 610 (850)
Q Consensus 550 ~g~~l~~~l~~llp~L~~~L~~-----------------r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~--~~i~~~l 610 (850)
+|..+.||++.+++.+.+.+.. .+.+.+..++.+++.++.+.+..+. +++ +.+++.+
T Consensus 559 ~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~----~~~~~~~~~~~l 634 (852)
T 4fdd_A 559 LQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIE----QLVARSNILTLM 634 (852)
T ss_dssp HGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGH----HHHHTCCHHHHH
T ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHH----HHhcCCcHHHHH
Confidence 9999999999988865544321 1345678889999999988875543 233 4678888
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHcCCc--hhHHhHHHHHHhhcccccccCCCCCCCCCCCcccchhhhcccccHHHHH
Q 003081 611 SSACRKKIKKYREAAFSCLEQVIKAFRDP--KFFNIIFPLLFEMCGSTALNKSGQVPLPSDASKEESADESVSAPLDKVL 688 (850)
Q Consensus 611 ~~e~~r~~~~~R~~Al~~Lg~l~~~~~~~--~~~~iv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (850)
...+.+++..+|..|+.++++++..++.. .+.+.+.|.+.+..+ .+.. +.+...+. .+
T Consensus 635 ~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~-------------~~~~------~v~~~a~~-al 694 (852)
T 4fdd_A 635 YQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLN-------------PEFI------SVCNNATW-AI 694 (852)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCC-------------TTSH------HHHHHHHH-HH
T ss_pred HHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcC-------------ccch------HHHHHHHH-HH
Confidence 88888788999999999999999988742 234556666665553 1111 12333333 34
Q ss_pred HhhhhhccccccccHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHhhcccCCCCCCCCcChhHHHHHHHHhh
Q 003081 689 DCVSSCIHVAHVNDIIEQEKNLVQLFTISLSPGFPWTVKMSAFSSIKELCSRLQKTLDDSAGTSPHAGISSLIQELFHTV 768 (850)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 768 (850)
+.+...+|..+.+-...-...+.+. + .-++....++..+..++..+....... ..+++..++..+|.+|
T Consensus 695 g~i~~~~~~~~~p~~~~il~~L~~~-l--~~~~~~~~~~~~a~~~igrl~~~~~~~--------~~~~l~~~~~~~~~~l 763 (852)
T 4fdd_A 695 GEISIQMGIEMQPYIPMVLHQLVEI-I--NRPNTPKTLLENTAITIGRLGYVCPQE--------VAPMLQQFIRPWCTSL 763 (852)
T ss_dssp HHHHHHHGGGGGGGTHHHHHHHHHH-H--TCSSCCHHHHHHHHHHHHHHHHHCHHH--------HGGGHHHHHHHHHHHH
T ss_pred HHHHHHhhHhHHHHHHHHHHHHHHH-h--CCCCCCchHHHHHHHHHHHHHHhCHHH--------hCccHHHHHHHHHHHh
Confidence 4444444544433332222223333 2 235556788888889998887764432 2367788888888877
Q ss_pred CchhhhhhhhhhhhhHHHHHHHHHHHHHHHhcc
Q 003081 769 SPKVVECISTVKIAQVHISASECLLEICKLFRQ 801 (850)
Q Consensus 769 ~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~~~~ 801 (850)
.. + +-...|..|..++-.+++...+
T Consensus 764 ~~-~-------~d~~e~~~a~~~l~~li~~~p~ 788 (852)
T 4fdd_A 764 RN-I-------RDNEEKDSAFRGICTMISVNPS 788 (852)
T ss_dssp HT-S-------CSSHHHHHHHHHHHHHHHHCGG
T ss_pred cc-c-------cccHHHHHHHHHHHHHHHhChH
Confidence 41 1 1122346777778777765543
No 6
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.97 E-value=2.4e-27 Score=304.54 Aligned_cols=602 Identities=13% Similarity=0.115 Sum_probs=425.4
Q ss_pred HHHHHHhhcCCCCHhHHHHH-HHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhH
Q 003081 117 LIPKLVRFQYDPDKNVQDAM-AHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGK 195 (850)
Q Consensus 117 lvp~L~r~~~Dp~~~VR~a~-~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~ 195 (850)
-++.|+.-..+|++.+|+.+ .++++.+..+....-+...+.+++.|+..+.|++|++|.+|+.+++.+.++.+. +
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~----~ 82 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE----Y 82 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH----H
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH----H
Confidence 45566666689999999966 678887765432222345678899999999999999999999999999987653 6
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCC-CchhHHHHHHHHH
Q 003081 196 HLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGIL-SKVDSISKASIGV 274 (850)
Q Consensus 196 ~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~-s~~~evr~~a~~~ 274 (850)
+++.+++.++..+.|.++.||.+|..++..+... +.+..........+.+.++|.|+. ++. ++++++|..++.+
T Consensus 83 ~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~----l~~~~~~~~~~~~~~~~llp~L~~-~l~~~~~~~~~~~al~~ 157 (1230)
T 1u6g_C 83 QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGE----LPPASSGSALAANVCKKITGRLTS-AIAKQEDVSVQLEALDI 157 (1230)
T ss_dssp HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHH----CC-----CCTHHHHHHHHHHHHHH-HHSCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh----CCCcccccchHHHHHHHHHHHHHH-HHcCCCchHHHHHHHHH
Confidence 7888999999999999899999987666555432 221100001234578899999984 666 4778999999999
Q ss_pred HHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhh
Q 003081 275 VMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTES 354 (850)
Q Consensus 275 L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~ 354 (850)
|.++++..|+.+.||++++++.|+..+.+.++.+ |..+ ..++..+......+.
T Consensus 158 l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~v---------------------R~~a------~~al~~l~~~~~~~~ 210 (1230)
T 1u6g_C 158 MADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAV---------------------RKRT------IIALGHLVMSCGNIV 210 (1230)
T ss_dssp HHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHH---------------------HHHH------HHHHHHHTTTC----
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHH---------------------HHHH------HHHHHHHHHhcCHHH
Confidence 9999999999999999999999999998654332 2111 234555555555555
Q ss_pred HhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHH
Q 003081 355 LDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPS 434 (850)
Q Consensus 355 l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~ 434 (850)
++.++|.+.+.+++..+...|..+++.++.++...|..|.||++.+++.++..+ .|.++.||+.+..+++.+++.++.+
T Consensus 211 ~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l-~d~~~~vR~~a~~~l~~l~~~~~~~ 289 (1230)
T 1u6g_C 211 FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFC-NVDDDELREYCIQAFESFVRRCPKE 289 (1230)
T ss_dssp CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHH-SSCCTTTHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHChHH
Confidence 677888888888765445678889999999999999999999999999999999 6888999999999999999887653
Q ss_pred ---HHHHHHHHHHHhhcC------------------------------------C--chhhHHHHHHHHHHHhhchhhhh
Q 003081 435 ---QAQKLIEETAALHID------------------------------------D--KNSQISCAILLKSYSSVASDVLS 473 (850)
Q Consensus 435 ---~v~~li~~l~~~~~~------------------------------------d--~~~r~~~~~~l~al~~~~~~~f~ 473 (850)
.+..+++.+...+.. | ...|..++.++..++...++.|.
T Consensus 290 ~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~ 369 (1230)
T 1u6g_C 290 VYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLP 369 (1230)
T ss_dssp CHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHH
Confidence 344444444332210 0 11377889999999987787899
Q ss_pred hhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcC-------------------CChhhHHhhHHHHHHHHHHhhcCCCHH
Q 003081 474 GYHAVIVPVIFISRFEDDKYVSDLFEELWEENTS-------------------GDRVTLQLYLGEIVSLICEGIASSSWS 534 (850)
Q Consensus 474 ~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~-------------------~~~~~i~~yl~eIl~ll~~~L~d~s~~ 534 (850)
+++..++|.+.....|.+++||....+.+..++. ++...+..+++.|++.+...+.+++|.
T Consensus 370 ~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~ 449 (1230)
T 1u6g_C 370 EFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVK 449 (1230)
T ss_dssp HHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHH
Confidence 9999999987666667788888666555544432 222356788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCh--hhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHH
Q 003081 535 SKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLW--EGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSS 612 (850)
Q Consensus 535 vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~--~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~ 612 (850)
+|..+..+++.++...+..+.+|++.++|.+.+.+.++.+ ..++.++.+++.++...+.. ...++.+.++|.+..
T Consensus 450 vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~---~~~~~l~~llp~L~~ 526 (1230)
T 1u6g_C 450 TRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQ---VFHPHVQALVPPVVA 526 (1230)
T ss_dssp HHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGG---GGHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHH---HHHhHHHHHHHHHHH
Confidence 9999999999999988888889999999999999988765 77888888888887644322 123467788899988
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHHcCC------c---hhHHhHHHHHHhhcccccccCCCCCCCCCCCcccchhhhccccc
Q 003081 613 ACRKKIKKYREAAFSCLEQVIKAFRD------P---KFFNIIFPLLFEMCGSTALNKSGQVPLPSDASKEESADESVSAP 683 (850)
Q Consensus 613 e~~r~~~~~R~~Al~~Lg~l~~~~~~------~---~~~~iv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (850)
...+++..+|..|+.+++.+++.++. . .+.+.+.|.+...... .|. + .+.|...
T Consensus 527 ~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~------------~d~---~--~~vr~~a 589 (1230)
T 1u6g_C 527 CVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKA------------ADI---D--QEVKERA 589 (1230)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSC------------SSS---C--HHHHHHH
T ss_pred HHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhc------------cCC---C--HHHHHHH
Confidence 88888999999999999999998865 1 3455566665554320 000 0 0134444
Q ss_pred HHHHHHhhhhhccccccccHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHhhcccCCCCCCCCcChhHHHHH
Q 003081 684 LDKVLDCVSSCIHVAHVNDIIEQEKNLVQLFTISLSPGFPWTVKMSAFSSIKELCSRLQKTLDDSAGTSPHAGISSLIQE 763 (850)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (850)
.. .++.+....|..+.+.. ..+... +..++.+ ..+|.....++..+... ..+.....++..
T Consensus 590 ~~-~lg~L~~~~g~~~~~~~----~~~l~~-L~~~l~~--e~~r~~~~~al~~i~~~-----------~~~~~~~~~~~~ 650 (1230)
T 1u6g_C 590 IS-CMGQIICNLGDNLGSDL----PNTLQI-FLERLKN--EITRLTTVKALTLIAGS-----------PLKIDLRPVLGE 650 (1230)
T ss_dssp HH-HHHHHHHHTGGGCCTHH----HHHHHH-HHHHTTS--SSHHHHHHHHHHHHTTC-----------SSCCCCHHHHHH
T ss_pred HH-HHHHHHHHhCchhhhhH----HHHHHH-HHHHhcc--chhHHHHHHHHHHHHhC-----------ccccchHHHHHH
Confidence 43 55566666676665432 112222 3334443 23677667766655321 011223344444
Q ss_pred HHHhhCchhhhhhhhhhhhhHHHHHHHHHHHHHHHh
Q 003081 764 LFHTVSPKVVECISTVKIAQVHISASECLLEICKLF 799 (850)
Q Consensus 764 ~~~~l~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~~ 799 (850)
++..| ...+++ ....+|..|++|+-.+++.+
T Consensus 651 i~~~L----~~~l~~-~~~~~r~~a~~al~~l~~~~ 681 (1230)
T 1u6g_C 651 GVPIL----ASFLRK-NQRALKLGTLSALDILIKNY 681 (1230)
T ss_dssp HHHHH----HHHTTS-CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH----HHHHHh-CCHHHHHHHHHHHHHHHhcc
Confidence 44333 333322 34567788888888887555
No 7
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.97 E-value=2.2e-28 Score=314.25 Aligned_cols=545 Identities=11% Similarity=0.084 Sum_probs=387.2
Q ss_pred hHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChH----
Q 003081 74 DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKR---- 149 (850)
Q Consensus 74 ~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~---- 149 (850)
.++..++....+ ..|..|++|+.+++.+++.+++ ++++.++|.|...+.||++.||.+++.+...++.....
T Consensus 48 ~il~~Ll~~L~d-~~~~vR~~A~~~L~~l~~~~~~---~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~ 123 (1230)
T 1u6g_C 48 KVVKMILKLLED-KNGEVQNLAVKCLGPLVSKVKE---YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 123 (1230)
T ss_dssp HHHHHHHHHTTC-SSHHHHHHHHHHHHHHHTTSCH---HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccc
Confidence 456666665554 4699999999999999987755 67888999999999999999999999988888754322
Q ss_pred --HHHHHHHHHHHHHHHhhC-CCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Q 003081 150 --TIDEHLDLIFDDLLIQSG-SRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSV 226 (850)
Q Consensus 150 --~i~~~~~~Il~~Ll~~l~-~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L 226 (850)
....+.+.+++.|+..+. +++|++|++++.+++++++..+ +.+.+|++++++.++..+.|.+..||.+|..++..+
T Consensus 124 ~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~-~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l 202 (1230)
T 1u6g_C 124 SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG-GLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHL 202 (1230)
T ss_dssp CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC-SSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhH-hHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 245688999999999998 5899999999999999997433 356789999999999999999999999987666655
Q ss_pred HHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCC-chhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccc
Q 003081 227 TSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILS-KVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLE 305 (850)
Q Consensus 227 ~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s-~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~e 305 (850)
+.. +. ...+..++|.|+. .+.+ ..+.+|..++.+|+.++...|+.+.||+++++|.+++.+.+.+
T Consensus 203 ~~~----~~---------~~~~~~~l~~l~~-~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~ 268 (1230)
T 1u6g_C 203 VMS----CG---------NIVFVDLIEHLLS-ELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDD 268 (1230)
T ss_dssp TTT----C-------------CTTHHHHHHH-HHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCC
T ss_pred HHh----cC---------HHHHHHHHHHHHH-HhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 321 11 1123444555442 2221 2246788899999999999999999999999999999998766
Q ss_pred hhhhhHHHHhhhhcc-cchhhhHHHHHhhccCCcHHHHHHHHHhhcCh--hh-----------Hhh--HHHHH---HH--
Q 003081 306 DQGLNYIELHAANAG-IQTEKLENLRISIAKGSPMWDTLDLCINVVDT--ES-----------LDQ--LVPHL---AR-- 364 (850)
Q Consensus 306 p~~~nyl~~~a~~~~-~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~--~~-----------l~~--lvp~L---~~-- 364 (850)
+++..+.....+... .-.+.+. .++.+.+..++..+.. .. ++. ..... ..
T Consensus 269 ~~vR~~a~~~l~~l~~~~~~~~~---------~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 339 (1230)
T 1u6g_C 269 DELREYCIQAFESFVRRCPKEVY---------PHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEY 339 (1230)
T ss_dssp TTTHHHHHHHHHHHHHCTTCCCH---------HHHHHHHHHHTTCCCCC-------------------------------
T ss_pred HHHHHHHHHHHHHHHHHChHHHH---------HhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhccccc
Confidence 655433222111100 0000000 0011111111111100 00 000 00000 00
Q ss_pred HHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCC------------
Q 003081 365 LVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYAT------------ 432 (850)
Q Consensus 365 ~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~------------ 432 (850)
...+...|..|.+++..+..++...+..+.||.+.+++.+...+ .|+++.||..+..+++.+++..+
T Consensus 340 ~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 418 (1230)
T 1u6g_C 340 SDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRF-KEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAM 418 (1230)
T ss_dssp -----CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTT-SCSSSHHHHHHHHHHHHHHHHHCCC----------
T ss_pred ccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHHhccccccccCcccc
Confidence 00112235568899999999988777678899999999999988 79999999999999998887432
Q ss_pred ------HHHHHHHHHHHHH----hhc-CCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCch--HHHHHHH
Q 003081 433 ------PSQAQKLIEETAA----LHI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDK--YVSDLFE 499 (850)
Q Consensus 433 ------~~~v~~li~~l~~----~~~-~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~--~v~~~~~ 499 (850)
...+..+++.+.. .+. +++..|..++.+++.++...++.+.+|.+.++|.++....+..+ .++....
T Consensus 419 ~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~ 498 (1230)
T 1u6g_C 419 EQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDAL 498 (1230)
T ss_dssp --CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHH
T ss_pred ccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHH
Confidence 1233444444443 343 34456888889999998888888888999999999888777543 6665555
Q ss_pred HHHHHhcCCC-hhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCc-------chhhhHHHHHHHHHHhc--
Q 003081 500 ELWEENTSGD-RVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGE-------SLSNYHHVLLESIMKEV-- 569 (850)
Q Consensus 500 ~v~~~l~~~~-~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~-------~l~~~l~~llp~L~~~L-- 569 (850)
..+..+.... +..+.+|++.+++.+...+.|++|.+|..+..+++.++..+|. .+.+|++.++|.+.+.+
T Consensus 499 ~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~ 578 (1230)
T 1u6g_C 499 SCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKA 578 (1230)
T ss_dssp HHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhc
Confidence 5555544322 2347789999999999999999999999999999999999887 78899999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCC---chhHHhHH
Q 003081 570 PGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRD---PKFFNIIF 646 (850)
Q Consensus 570 ~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~~---~~~~~iv~ 646 (850)
.+..++.|+.++.+++.++...++.+ .++.+.+++.+...+. ++..|..++++++.++..... ..+...+.
T Consensus 579 ~d~~~~vr~~a~~~lg~L~~~~g~~~----~~~~~~~l~~L~~~l~--~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~ 652 (1230)
T 1u6g_C 579 ADIDQEVKERAISCMGQIICNLGDNL----GSDLPNTLQIFLERLK--NEITRLTTVKALTLIAGSPLKIDLRPVLGEGV 652 (1230)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHTGGGC----CTHHHHHHHHHHHHTT--SSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHhCchh----hhhHHHHHHHHHHHhc--cchhHHHHHHHHHHHHhCccccchHHHHHHHH
Confidence 55668899999999999999887654 3577888888877765 345799999999998875432 23455555
Q ss_pred HHHHhhc
Q 003081 647 PLLFEMC 653 (850)
Q Consensus 647 ~~l~~~~ 653 (850)
|.+....
T Consensus 653 ~~L~~~l 659 (1230)
T 1u6g_C 653 PILASFL 659 (1230)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 6655544
No 8
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.97 E-value=1.5e-27 Score=281.40 Aligned_cols=567 Identities=12% Similarity=0.078 Sum_probs=405.7
Q ss_pred HHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHH
Q 003081 76 IYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHL 155 (850)
Q Consensus 76 v~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~ 155 (850)
+..++....+. ++..|+.|+.+++.+....+. +....+++|.|.... |+++.||+.+..+++.+..... -..|.
T Consensus 12 i~~l~~~l~s~-~~~~R~~A~~~l~~i~~~~~~--~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~--~~~~~ 85 (588)
T 1b3u_A 12 IAVLIDELRNE-DVQLRLNSIKKLSTIALALGV--ERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVG--GPEYV 85 (588)
T ss_dssp HHHHHHHTTCS-CHHHHHHHHHTHHHHHHHSCH--HHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGT--SGGGG
T ss_pred HHHHHHHhhcc-cHHHHHHHHHhHHHHHHHhCH--HHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccC--cHHHH
Confidence 44555544444 588899999999888765432 123557899987766 9999999999988877653211 12356
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhh
Q 003081 156 DLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCD 235 (850)
Q Consensus 156 ~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~ 235 (850)
..+++.|...+.++++.||++++.+++.+....+.+.+.+++ ++.+.++..+....+|.+|..++..+.. .+
T Consensus 86 ~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l---~~~l~~l~~~~~~~~R~~a~~~l~~~~~----~~- 157 (588)
T 1b3u_A 86 HCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF---VPLVKRLAGGDWFTSRTSACGLFSVCYP----RV- 157 (588)
T ss_dssp GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTH---HHHHHHHHTCSSHHHHHHHGGGHHHHTT----TS-
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHH---HHHHHHHhcCCCcHHHHHHHHHHHHHHH----hc-
Confidence 778888877778899999999999999999877766555544 4444555566678899988765554421 11
Q ss_pred cccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHh
Q 003081 236 VTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELH 315 (850)
Q Consensus 236 ~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~ 315 (850)
.....+.++|.+. ..+.+++++||..++.+|+.+++..|.. .+.+.++|.++..+++.++.+
T Consensus 158 --------~~~~~~~l~~~l~-~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~v------- 219 (588)
T 1b3u_A 158 --------SSAVKAELRQYFR-NLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSV------- 219 (588)
T ss_dssp --------CHHHHHHHHHHHH-HHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHH-------
T ss_pred --------CHHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHH-------
Confidence 1235677888876 3566788999999999999999987763 567889999998887544322
Q ss_pred hhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChh-hHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhccccc
Q 003081 316 AANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTE-SLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIK 394 (850)
Q Consensus 316 a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~-~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~ 394 (850)
|..+ .+++..+...++.+ ..+.++|.+.+.+++. .+..|..++..++.++...+...
T Consensus 220 --------------r~~a------~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~~~- 277 (588)
T 1b3u_A 220 --------------RLLA------VEACVNIAQLLPQEDLEALVMPTLRQAAEDK-SWRVRYMVADKFTELQKAVGPEI- 277 (588)
T ss_dssp --------------HTTH------HHHHHHHHHHSCHHHHHHHTHHHHHHHHTCS-SHHHHHHHHHTHHHHHHHHCHHH-
T ss_pred --------------HHHH------HHHHHHHHHhCCHHHHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHHhCccc-
Confidence 2111 23444444444433 3456788888888764 67789999999999988766532
Q ss_pred chHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHH-----HHHHHHHHHHHhhc-CCchhhHHHHHHHHHHHhhc
Q 003081 395 PYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPS-----QAQKLIEETAALHI-DDKNSQISCAILLKSYSSVA 468 (850)
Q Consensus 395 py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~-----~v~~li~~l~~~~~-~d~~~r~~~~~~l~al~~~~ 468 (850)
+.+.+++.++..+ .|.++.||+.++.+++.++...+.+ ....+++.+..... .++..|..++.+++.++...
T Consensus 278 -~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~ 355 (588)
T 1b3u_A 278 -TKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL 355 (588)
T ss_dssp -HHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHH
T ss_pred -chhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 5677888899988 7899999999999999999887654 34556666665553 34567888888888887766
Q ss_pred hhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 003081 469 SDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGE 548 (850)
Q Consensus 469 ~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~ 548 (850)
++.. ..+.++|.+.....|++++||....+.+..+....+. ..+.+.+++.+...+.|++|.+|..++.+++.++.
T Consensus 356 ~~~~--~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~ 431 (588)
T 1b3u_A 356 GKDN--TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAG 431 (588)
T ss_dssp CHHH--HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred hHhH--HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 6532 3466888887777888889998877666655443221 23556788888888899999999999999999999
Q ss_pred HhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHH
Q 003081 549 ILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSC 628 (850)
Q Consensus 549 ~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~ 628 (850)
.+|..+ +.+.++|.+.+.+.+..|..|+..+.+++.++...+.. .+.+.++|.+.....+.+..+|..++.+
T Consensus 432 ~~~~~~--~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~------~~~~~llp~l~~~~~~~~~~~R~~a~~~ 503 (588)
T 1b3u_A 432 QLGVEF--FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE------WAHATIIPKVLAMSGDPNYLHRMTTLFC 503 (588)
T ss_dssp HHCGGG--CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH------HHHHHTHHHHHHTTTCSCHHHHHHHHHH
T ss_pred HcCHHH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch------hHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 888753 34779999999999989999999999999999876542 1356788888877777889999999999
Q ss_pred HHHHHHHcCCchhHHhHHHHHHhhcccccccCCCCCCCCCCCcccchhhhcccccHHHHHHhhhhhccccccccHHHHHH
Q 003081 629 LEQVIKAFRDPKFFNIIFPLLFEMCGSTALNKSGQVPLPSDASKEESADESVSAPLDKVLDCVSSCIHVAHVNDIIEQEK 708 (850)
Q Consensus 629 Lg~l~~~~~~~~~~~iv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (850)
++.++..++...+.+.+.|.+..... ++... -|...+. .++.+...+|..... .
T Consensus 504 l~~l~~~~~~~~~~~~~~~~l~~~l~-------------d~~~~------Vr~~a~~-~l~~l~~~~~~~~~~------~ 557 (588)
T 1b3u_A 504 INVLSEVCGQDITTKHMLPTVLRMAG-------------DPVAN------VRFNVAK-SLQKIGPILDNSTLQ------S 557 (588)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHGGG-------------CSCHH------HHHHHHH-HHHHHGGGSCHHHHH------H
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhhCC-------------CCCch------HHHHHHH-HHHHHHHHhchhhhH------H
Confidence 99999988765566677777776653 11111 2333333 334444444432111 1
Q ss_pred HHHHHHHhhcCCCCCchHHHHHHHHHHHH
Q 003081 709 NLVQLFTISLSPGFPWTVKMSAFSSIKEL 737 (850)
Q Consensus 709 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 737 (850)
.+. +.+.+.+.+..+.||.++.+++..+
T Consensus 558 ~~~-p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 558 EVK-PILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHH-HHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHH-HHHHHHcCCCchhHHHHHHHHHHHh
Confidence 122 3345566789999999999888654
No 9
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.96 E-value=5.5e-26 Score=281.15 Aligned_cols=495 Identities=12% Similarity=0.103 Sum_probs=367.8
Q ss_pred hHHHHHHHHhcc------chhhhhhhhHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCC
Q 003081 74 DLIYKFMDLANY------QVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADP 147 (850)
Q Consensus 74 ~lv~~fm~la~~------~~~w~sr~gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~ 147 (850)
.+++.++..... ...|+.|++|+.+++.++...++. .++.++|.+..++.|+++.||.++..+++.++...
T Consensus 321 ~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~ 397 (876)
T 1qgr_A 321 YLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGP 397 (876)
T ss_dssp HHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS
T ss_pred HHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh---hHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCC
Confidence 455555555432 235999999999999999988753 46779999999999999999999999999999766
Q ss_pred h-HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchh-hhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 003081 148 K-RTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQ-VGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRS 225 (850)
Q Consensus 148 ~-~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~-l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~ 225 (850)
. ..+..|++.+++.++..+.|++++||.++|.+++.+.+..+... ..+|++.+++.+++.++|. +.||..+..++..
T Consensus 398 ~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~ 476 (876)
T 1qgr_A 398 EPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSS 476 (876)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Confidence 4 55777999999999999999999999999999999998654322 4688999999999999986 8899887666655
Q ss_pred HHHHHHHhh---hccc-CcchhHHhHHHHhHHHHhhccCCC---chhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHH
Q 003081 226 VTSLTIRLC---DVTL-TEISDARQSMDIVLPFLLAEGILS---KVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCML 298 (850)
Q Consensus 226 L~~~~~r~~---~~~~-~~~~~~~~~l~~lLP~Ll~~gL~s---~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL 298 (850)
+...+-... ++.. .......+++..++|.|+. -+.. +...+|..++++++.+++..|..+.||++.++|.++
T Consensus 477 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~-~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~ 555 (876)
T 1qgr_A 477 LAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLE-TTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIM 555 (876)
T ss_dssp HHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHH-HTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHH
T ss_pred HHHHhhhccccccccccccchhhhHhHHHHHHHHHH-HHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHH
Confidence 544321000 0000 0001123467788888774 2222 246789999999999999999999999999999999
Q ss_pred Hhcccc---chhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcC-h---hhHhhHHHHHHHHHhccCC
Q 003081 299 ESLSSL---EDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVD-T---ESLDQLVPHLARLVRSGIG 371 (850)
Q Consensus 299 ~~Ls~~---ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld-~---~~l~~lvp~L~~~lk~~~~ 371 (850)
+.+... +.+.. . ..+.+.+...|.. +..++..++..++ . ..++.++|.+...+++..+
T Consensus 556 ~~l~~~~~~~~~~~-------~--~~d~~~~~~~~~~------~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 620 (876)
T 1qgr_A 556 ERLQQVLQMESHIQ-------S--TSDRIQFNDLQSL------LCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAG 620 (876)
T ss_dssp HHHHHHHTTTTSCC-------S--TTHHHHHHHHHHH------HHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHhccC-------C--hhhHHHHHHHHHH------HHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccC
Confidence 887631 00000 0 0001111222221 2345666666666 3 2457788888888876532
Q ss_pred -CchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcC-cHHHHHHHHHHHHHHhhhCCHH---HHHHHHHHHHHh
Q 003081 372 -LNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEK-SAAAKRAFASACASVLKYATPS---QAQKLIEETAAL 446 (850)
Q Consensus 372 -~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~-n~~Vr~~~a~alg~L~~~~~~~---~v~~li~~l~~~ 446 (850)
...|..++.++..++...+..+.||.+.+++.+...+ .+. ++.||..+..++|.+++..+.. .+..+++.+.+.
T Consensus 621 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~ 699 (876)
T 1qgr_A 621 SGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGL-KNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLEN 699 (876)
T ss_dssp CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH-HHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-cCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 2467889999999999999999999999999999999 566 8999999999999998876532 234555555555
Q ss_pred hcC---CchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCC----ch-------HHHHHHHHHHHHhcCCCh--
Q 003081 447 HID---DKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFED----DK-------YVSDLFEELWEENTSGDR-- 510 (850)
Q Consensus 447 ~~~---d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~----~~-------~v~~~~~~v~~~l~~~~~-- 510 (850)
+.. +.+.|..+..+++.++...++.|.+|++.++|.+..+..+. ++ .+|..+.+.|..++.+.+
T Consensus 700 l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~ 779 (876)
T 1qgr_A 700 LGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGD 779 (876)
T ss_dssp HTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred hCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 543 34578889999999999889999999999999987765432 12 567666677765544321
Q ss_pred --------hhHHhhHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHHHHHhCc-chhhh-HHHHHHHHHH-hcCCCChhhH
Q 003081 511 --------VTLQLYLGEIVSLICEGIASS--SWSSKRKSAKAICKLGEILGE-SLSNY-HHVLLESIMK-EVPGRLWEGK 577 (850)
Q Consensus 511 --------~~i~~yl~eIl~ll~~~L~d~--s~~vr~~aa~alg~la~~~g~-~l~~~-l~~llp~L~~-~L~~r~~~gK 577 (850)
..+.+|++.|++++.....++ +..+|+.|+.+||+++...|. .+.++ .+.+++.|++ ++.+.+...|
T Consensus 780 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r 859 (876)
T 1qgr_A 780 QENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAK 859 (876)
T ss_dssp SSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHH
Confidence 357899999999988877777 679999999999999999998 88888 5788888888 8878888899
Q ss_pred HHHHHHHHHHHH
Q 003081 578 DALLYAIGSIST 589 (850)
Q Consensus 578 e~vL~aL~~l~~ 589 (850)
..+..|++.+..
T Consensus 860 ~~a~~a~~~~~~ 871 (876)
T 1qgr_A 860 TLARWATKELRK 871 (876)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998874
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.96 E-value=3.2e-26 Score=270.09 Aligned_cols=530 Identities=13% Similarity=0.122 Sum_probs=388.2
Q ss_pred hHHHHHHHhhhcCC----chHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHH
Q 003081 59 TYKELCNLANEMGQ----PDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQD 134 (850)
Q Consensus 59 tyk~l~~lA~~~g~----p~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~ 134 (850)
+-+.|..++..+|. +++++.+.... ...+.-|+.++..|+.+.+..+. .++...++|.|.....|+++.||+
T Consensus 30 A~~~l~~i~~~~~~~~~~~~l~~~L~~~~--d~~~~vr~~~~~~L~~~~~~~~~--~~~~~~ll~~L~~l~~~~~~~vR~ 105 (588)
T 1b3u_A 30 SIKKLSTIALALGVERTRSELLPFLTDTI--YDEDEVLLALAEQLGTFTTLVGG--PEYVHCLLPPLESLATVEETVVRD 105 (588)
T ss_dssp HHHTHHHHHHHSCHHHHHHTHHHHHHHTC--CCCHHHHHHHHHHHTTCSGGGTS--GGGGGGGHHHHHHHTTSSCHHHHH
T ss_pred HHHhHHHHHHHhCHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHhccCc--HHHHHHHHHHHHHHHhCchHHHHH
Confidence 33445555655554 34566665544 23467788888777766554322 246778999998888999999999
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHH
Q 003081 135 AMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKET 214 (850)
Q Consensus 135 a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~ 214 (850)
++..++..+....+. +...+.+++.+.....+++|++|.+++..++.+....+. .+.+++++.+..+++|..+.
T Consensus 106 ~a~~~L~~l~~~~~~--~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~----~~~~~l~~~l~~l~~d~~~~ 179 (588)
T 1b3u_A 106 KAVESLRAISHEHSP--SDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS----AVKAELRQYFRNLCSDDTPM 179 (588)
T ss_dssp HHHHHHHHHHTTSCH--HHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH----HHHHHHHHHHHHHHTCSCHH
T ss_pred HHHHHHHHHHHHCCH--HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHHhCCCCHH
Confidence 999999998865432 222234555555556788999999999999998876552 24568888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHH
Q 003081 215 VRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLV 294 (850)
Q Consensus 215 VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lv 294 (850)
||.+|...+..++..+ . ...+.+.++|.|+. .+.++.+.+|..++.+++.++...++. .+.+.++
T Consensus 180 VR~~a~~~l~~l~~~~----~--------~~~~~~~l~~~l~~-~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~ 244 (588)
T 1b3u_A 180 VRRAAASKLGEFAKVL----E--------LDNVKSEIIPMFSN-LASDEQDSVRLLAVEACVNIAQLLPQE--DLEALVM 244 (588)
T ss_dssp HHHHHHHHHHHHHHTS----C--------HHHHHHTHHHHHHH-HHTCSCHHHHTTHHHHHHHHHHHSCHH--HHHHHTH
T ss_pred HHHHHHHHHHHHHHHh----c--------HHhHHHHHHHHHHH-HhcCCcHHHHHHHHHHHHHHHHhCCHH--HHHHHHH
Confidence 9999876555553321 1 12355778888773 456778899999999999999887653 3556778
Q ss_pred HHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChh-hHhhHHHHHHHHHhccCCCc
Q 003081 295 SCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTE-SLDQLVPHLARLVRSGIGLN 373 (850)
Q Consensus 295 p~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~-~l~~lvp~L~~~lk~~~~~~ 373 (850)
|.+...+.+..+.+ |..+ .+++..+....+.+ ..+.++|.+.+.+++. ...
T Consensus 245 ~~l~~~~~d~~~~v---------------------R~~a------~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~ 296 (588)
T 1b3u_A 245 PTLRQAAEDKSWRV---------------------RYMV------ADKFTELQKAVGPEITKTDLVPAFQNLMKDC-EAE 296 (588)
T ss_dssp HHHHHHHTCSSHHH---------------------HHHH------HHTHHHHHHHHCHHHHHHTHHHHHHHHHTCS-SHH
T ss_pred HHHHHHccCCCHHH---------------------HHHH------HHHHHHHHHHhCcccchhHHHHHHHHHhCCC-cHH
Confidence 88777776543332 2111 12333333333333 2467899999999875 566
Q ss_pred hHhhHHHHHHHHHHHhccccc--chHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHH-HHHHHHHHHhhc-C
Q 003081 374 TRVGVASFISLLVQKIGMDIK--PYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQA-QKLIEETAALHI-D 449 (850)
Q Consensus 374 tr~~a~~~l~~L~~~~~~~~~--py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v-~~li~~l~~~~~-~ 449 (850)
.|.+++..+..++...+.... +|.+.+++.+...+ +|.++.||+.++.+++.+....+.+.. ..+++.+...+. +
T Consensus 297 vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~ 375 (588)
T 1b3u_A 297 VRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDE 375 (588)
T ss_dssp HHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC
Confidence 788999999999888776544 67888999998888 799999999999999999887776543 344555555554 3
Q ss_pred CchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhc
Q 003081 450 DKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIA 529 (850)
Q Consensus 450 d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~ 529 (850)
+++.|..+..+++.+....+.. .+.+.++|.+.....+.+..+|..+.+.+..+....+.. .+.+.+++.+...+.
T Consensus 376 ~~~Vr~~a~~~l~~l~~~~~~~--~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~ 451 (588)
T 1b3u_A 376 CPEVRLNIISNLDCVNEVIGIR--QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLCMAWLV 451 (588)
T ss_dssp CHHHHHHHHTTCHHHHHHSCHH--HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHHHHGGG
T ss_pred chHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHhc
Confidence 4567888888888877665432 245678888776677777778888777776655432221 345778999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHH
Q 003081 530 SSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDM 609 (850)
Q Consensus 530 d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~ 609 (850)
|+++.||..|+.+++.++..+|..+ +++.++|.|.+.+.+..|..|...+.+++.++..++.. .+.+.++|.
T Consensus 452 d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~------~~~~~~~~~ 523 (588)
T 1b3u_A 452 DHVYAIREAATSNLKKLVEKFGKEW--AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD------ITTKHMLPT 523 (588)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCHHH--HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH------HHHHHTHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHH
Confidence 9999999999999999999988753 47889999998888888999999999999999876532 267888999
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHcCCchhHHhHHHHHHhhcc
Q 003081 610 VSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCG 654 (850)
Q Consensus 610 l~~e~~r~~~~~R~~Al~~Lg~l~~~~~~~~~~~iv~~~l~~~~~ 654 (850)
+.+.+++.++.+|..++++|+.+...++...+.+.+.|.+..+.+
T Consensus 524 l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~ 568 (588)
T 1b3u_A 524 VLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQ 568 (588)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTT
T ss_pred HHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHcC
Confidence 999999999999999999999999988654455778888888753
No 11
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.84 E-value=7.5e-18 Score=192.16 Aligned_cols=392 Identities=11% Similarity=0.114 Sum_probs=271.0
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHHHH--HHHhh
Q 003081 159 FDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDD--IKETVRTAGDKLCRSVTSL--TIRLC 234 (850)
Q Consensus 159 l~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD--~k~~VR~aA~~~~~~L~~~--~~r~~ 234 (850)
+..++.++.+++..+|..|-..|..+-.. ..+..|..++..+.+ ....||..|..+++.+.+. ..+.-
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~--------~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~ 74 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVE--------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA 74 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHH
Confidence 34577778888999999999888775431 122344444444433 4688999998777776421 00000
Q ss_pred ---hc-ccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhh
Q 003081 235 ---DV-TLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLN 310 (850)
Q Consensus 235 ---~~-~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~n 310 (850)
.. ...+......+...+++. +.++.+.+ ..++.+++.|++..++. ..+|+++|.|++.+.+.
T Consensus 75 ~~~~~~~~l~~~~~~~ik~~ll~~-----l~~~~~~v-~~~~~~i~~ia~~~~~~--~~w~~ll~~L~~~l~~~------ 140 (462)
T 1ibr_B 75 QYQQRWLAIDANARREVKNYVLQT-----LGTETYRP-SSASQCVAGIACAEIPV--NQWPELIPQLVANVTNP------ 140 (462)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHH-----TTCCCSSS-CSHHHHHHHHHHHHGGG--TCCTTHHHHHHHHHHCT------
T ss_pred HHHhhhhcCCHHHHHHHHHHHHHH-----hCCCCchh-hHHHHHHHHHHHHhccc--cccHHHHHHHHHHhccC------
Confidence 00 000111112233334443 33334455 66777777777665431 24566666666655432
Q ss_pred HHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccC-CCchHhhHHHHHHHHHHHh
Q 003081 311 YIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGI-GLNTRVGVASFISLLVQKI 389 (850)
Q Consensus 311 yl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~-~~~tr~~a~~~l~~L~~~~ 389 (850)
. ....|.+++.++..++...
T Consensus 141 -----------------------------------------------------------~~~~~~r~~al~~l~~l~~~~ 161 (462)
T 1ibr_B 141 -----------------------------------------------------------NSTEHMKESTLEAIGYICQDI 161 (462)
T ss_dssp -----------------------------------------------------------TCCHHHHHHHHHHHHHHHHHS
T ss_pred -----------------------------------------------------------CCCHHHHHHHHHHHHHHHHhC
Confidence 0 1123444555555555554
Q ss_pred -cccccchHHHHHHHHHHhhhhcC--cHHHHHHHHHHHHHHhhhCCHH----HHHHH-HHHHHHhhc-CCchhhHHHHHH
Q 003081 390 -GMDIKPYTSMLLRLLFPVVKEEK--SAAAKRAFASACASVLKYATPS----QAQKL-IEETAALHI-DDKNSQISCAIL 460 (850)
Q Consensus 390 -~~~~~py~~~lL~~Ll~~l~~D~--n~~Vr~~~a~alg~L~~~~~~~----~v~~l-i~~l~~~~~-~d~~~r~~~~~~ 460 (850)
+..+.+|.+.+++.++..+ .|. ++.||..++.+++.++....+. ...++ ++.+.+... .|++.|..++.+
T Consensus 162 ~~~~~~~~~~~ll~~l~~~l-~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~ 240 (462)
T 1ibr_B 162 DPEQLQDKSNEILTAIIQGM-RKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQN 240 (462)
T ss_dssp CGGGTGGGHHHHHHHHHHHH-STTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred CchhhHhHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 4457789999999999999 566 7999999999999877654321 12232 343443333 356678899999
Q ss_pred HHHHHhhchhhhhhhHh-hHhHHHHHHhcCCchHHHHHHHHHHHHhcCC---------------------ChhhHHhhHH
Q 003081 461 LKSYSSVASDVLSGYHA-VIVPVIFISRFEDDKYVSDLFEELWEENTSG---------------------DRVTLQLYLG 518 (850)
Q Consensus 461 l~al~~~~~~~f~~~~~-~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~---------------------~~~~i~~yl~ 518 (850)
+..++...++.|.+|.. .++|+++....+.++.++....+.|..++.. ....+++|++
T Consensus 241 l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (462)
T 1ibr_B 241 LVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQ 320 (462)
T ss_dssp HHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhh
Confidence 99999998988999999 9999888777788888988877888766432 1223456788
Q ss_pred HHHHHHHHhhc-------CCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhc
Q 003081 519 EIVSLICEGIA-------SSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSC 591 (850)
Q Consensus 519 eIl~ll~~~L~-------d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~ 591 (850)
.+++.+...+. +.+|.+|+.|+.+++.++..+|. ..++.++|.+.+.+.+..|..|+.++.+++.++.++
T Consensus 321 ~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~ 397 (462)
T 1ibr_B 321 YLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGP 397 (462)
T ss_dssp HHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS
T ss_pred hccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCC
Confidence 89998887774 35799999999999999999884 457889999999999989999999999999998766
Q ss_pred ccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCC
Q 003081 592 HKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRD 638 (850)
Q Consensus 592 ~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~~ 638 (850)
... ...++++.++|.+...+++.++.+|..|+++|+.++..++.
T Consensus 398 ~~~---~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 398 EPS---QLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp CTT---TTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred cHH---HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence 411 12356788999999999999999999999999999998864
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.79 E-value=1.6e-16 Score=181.18 Aligned_cols=400 Identities=11% Similarity=0.127 Sum_probs=274.6
Q ss_pred HHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCc---------
Q 003081 120 KLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKF--------- 190 (850)
Q Consensus 120 ~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~--------- 190 (850)
.++....+|++.+|+.+....+.+... ..+.++..++. ++.+ .+.++.+|+.|+..|.+++.....
T Consensus 5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~---~~~~~~~~L~~-il~~-~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (462)
T 1ibr_B 5 TILEKTVSPDRLELEAAQKFLERAAVE---NLPTFLVELSR-VLAN-PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (462)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HHHC-TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhh---ChHHHHHHHHH-HHHc-CCCChHHHHHHHHHHHHhccccchHHHHHHHhh
Confidence 445556899999999998877665321 12333333333 3332 334789999999999999865421
Q ss_pred -hhhh-HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCc--hhH
Q 003081 191 -DQVG-KHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSK--VDS 266 (850)
Q Consensus 191 -~~l~-~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~--~~e 266 (850)
..+. +....|-..++..+.+..+.| ..+..++..++... . + ....+.++|.|++ .+.++ ++.
T Consensus 80 ~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~---~-~--------~~~w~~ll~~L~~-~l~~~~~~~~ 145 (462)
T 1ibr_B 80 WLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAE---I-P--------VNQWPELIPQLVA-NVTNPNSTEH 145 (462)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHH---G-G--------GTCCTTHHHHHHH-HHHCTTCCHH
T ss_pred hhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHh---c-c--------ccccHHHHHHHHH-HhccCCCCHH
Confidence 1111 122334445566666665556 44433333333221 1 1 0134567888774 35555 788
Q ss_pred HHHHHHHHHHHHHHhc-CcccccchHHHHHHHHHhccccc--hhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHH
Q 003081 267 ISKASIGVVMKLVKGA-GIAIRPHLSDLVSCMLESLSSLE--DQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTL 343 (850)
Q Consensus 267 vr~~a~~~L~~la~~~-g~~l~P~lp~Lvp~LL~~Ls~~e--p~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal 343 (850)
+|..++.+++.+++.. +..+.+|++.+++.++..+.+.+ +.+ |..+ ..++
T Consensus 146 ~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~v---------------------r~~a------~~~l 198 (462)
T 1ibr_B 146 MKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNV---------------------KLAA------TNAL 198 (462)
T ss_dssp HHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHH---------------------HHHH------HHHH
T ss_pred HHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHH---------------------HHHH------HHHH
Confidence 9999999999999976 67789999999999999998653 222 1111 1122
Q ss_pred HHHHhhcC----hhh-HhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHH-HHHHHHHHhhhhcCcHHHH
Q 003081 344 DLCINVVD----TES-LDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTS-MLLRLLFPVVKEEKSAAAK 417 (850)
Q Consensus 344 ~~~~~~ld----~~~-l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~-~lL~~Ll~~l~~D~n~~Vr 417 (850)
..++.++. ... .+.+++.+.+.+.+. ....|..+++++..++.+.+..+.||.+ .+++.++..+ .|.++.||
T Consensus 199 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~ 276 (462)
T 1ibr_B 199 LNSLEFTKANFDKESERHFIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVA 276 (462)
T ss_dssp HHHTTTTHHHHTSHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHH-HCSSHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCchHHH
Confidence 22222211 111 122466665555443 4567889999999999999999999999 9999999988 68999999
Q ss_pred HHHHHHHHHHhhhC--------------------CH----HHHHHHHHHHHHhhcC--------CchhhHHHHHHHHHHH
Q 003081 418 RAFASACASVLKYA--------------------TP----SQAQKLIEETAALHID--------DKNSQISCAILLKSYS 465 (850)
Q Consensus 418 ~~~a~alg~L~~~~--------------------~~----~~v~~li~~l~~~~~~--------d~~~r~~~~~~l~al~ 465 (850)
..+...++.+++.. .. ..+..+++.+.+.+.+ +...|..++.++..++
T Consensus 277 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~ 356 (462)
T 1ibr_B 277 LQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLA 356 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHH
Confidence 98888877776541 00 1234455555554421 1245889999999998
Q ss_pred hhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCCh-hhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 003081 466 SVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDR-VTLQLYLGEIVSLICEGIASSSWSSKRKSAKAIC 544 (850)
Q Consensus 466 ~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~-~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg 544 (850)
...++ .+.+.++|.+.....+.+..+|......++.++.+.. ..+.+|++++++.+...+.|+++.||..|+.++|
T Consensus 357 ~~~~~---~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~ 433 (462)
T 1ibr_B 357 TCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVG 433 (462)
T ss_dssp HHTTT---THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HhccH---HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 88774 5667788888777777788899998888988888764 4577899999999999999999999999999999
Q ss_pred HHHHHhCcch--hhhHHHHHHHHHHhcC
Q 003081 545 KLGEILGESL--SNYHHVLLESIMKEVP 570 (850)
Q Consensus 545 ~la~~~g~~l--~~~l~~llp~L~~~L~ 570 (850)
.++...+..+ .+|++.++|.|.++|+
T Consensus 434 ~~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 434 RICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp HHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred HHHHhcccccccHHHHHHHHHHHHHHhc
Confidence 9999988765 4789999999988774
No 13
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.76 E-value=1.6e-13 Score=171.65 Aligned_cols=547 Identities=12% Similarity=0.080 Sum_probs=342.9
Q ss_pred HHHHHhhh---cCCchHHHHHHHHhccc----hhhhhhhhHHhhHHHHHHHh-------------hhhhchhhhhHHHHH
Q 003081 62 ELCNLANE---MGQPDLIYKFMDLANYQ----VSLNSKRGAAFGFSKIAKQA-------------GDALKPHLRLLIPKL 121 (850)
Q Consensus 62 ~l~~lA~~---~g~p~lv~~fm~la~~~----~~w~sr~gAa~gl~~I~~~~-------------~~~l~p~L~~lvp~L 121 (850)
.|..++.. -+||+++..++.+.+++ +.-..+.++..-|..+.+.. .+.+..+++.+++.+
T Consensus 126 ~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll 205 (963)
T 2x19_B 126 ALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLL 205 (963)
T ss_dssp HHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHH
T ss_pred HHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 36899999999987651 01234566666677777643 223456677788888
Q ss_pred HhhcCCCCH--hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHH
Q 003081 122 VRFQYDPDK--NVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRR 199 (850)
Q Consensus 122 ~r~~~Dp~~--~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~ 199 (850)
..+..+++. .++..+.++....+. ...... ....+++.++..+. +|++|++++.++.+++.+...+...+++..
T Consensus 206 ~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~-~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~ 281 (963)
T 2x19_B 206 EQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQ-DCEALIQAAFAALQ--DSELFDSSVEAIVNAISQPDAQRYVNTLLK 281 (963)
T ss_dssp HHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGG-GTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTCTTGGGCHHHHHH
T ss_pred HHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcc-cchHHHHHHHHHhC--CchHHHHHHHHHHHHHcccccccCHHHHHH
Confidence 777776643 366666665544332 111111 12566777777774 589999999999999997655555667777
Q ss_pred HHHHHHHHh-------ccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhc----cCCCchhHHH
Q 003081 200 IWTAAFRAM-------DDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAE----GILSKVDSIS 268 (850)
Q Consensus 200 i~~~l~~~l-------dD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~----gL~s~~~evr 268 (850)
+|+.++..+ ++.+........++...++......+.... ...+.+..++.+|+.- |.-+..+++.
T Consensus 282 l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~----~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~ 357 (963)
T 2x19_B 282 LIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQV----EHWQSFLALVNMIMFCTGIPGHYPVNETTS 357 (963)
T ss_dssp HHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHHHHHTCSSCTTTTCGGG
T ss_pred HHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCc----cchHHHHHHHHHHHHHHcCCCCCCchhhhh
Confidence 777655432 111122222222222223222111221000 0123444566666531 2112345678
Q ss_pred HHHHHHHHHHHHhc-----------CcccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCC
Q 003081 269 KASIGVVMKLVKGA-----------GIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGS 337 (850)
Q Consensus 269 ~~a~~~L~~la~~~-----------g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s 337 (850)
..++..|..+++.. ...++|++++|++.++..+.-.+.. .+..+..+ +++.++..|..
T Consensus 358 ~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~--~~~~~~~d----e~~~~~~~r~~----- 426 (963)
T 2x19_B 358 SLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDE--EYGFWSSD----EKEQFRIYRVD----- 426 (963)
T ss_dssp GGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHH--HHHTSCHH----HHHHHHHHHHH-----
T ss_pred hhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcc--cccCCChh----HHHHHHHHHHH-----
Confidence 88899999888732 2446799999999999988532211 11100000 12334444433
Q ss_pred cHHHHHHHHHhhcChhhHhhHHHHHHHHHh---ccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcH
Q 003081 338 PMWDTLDLCINVVDTESLDQLVPHLARLVR---SGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSA 414 (850)
Q Consensus 338 ~l~eal~~~~~~ld~~~l~~lvp~L~~~lk---~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~ 414 (850)
+.+++..+......+.++.+++.+...+. +...|..|.+++..++.++..+.....++++.+++.+. .+ .+.++
T Consensus 427 -~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~-~l-~~~~~ 503 (963)
T 2x19_B 427 -ISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP-RI-SISNV 503 (963)
T ss_dssp -HHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG-GS-CCCSH
T ss_pred -HHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH-hC-CCCcH
Confidence 23566666666666677778888877773 22356778899999998887777777889999888554 44 34688
Q ss_pred HHHHHHHHHHHHHhhhCC--HHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhc--CC
Q 003081 415 AAKRAFASACASVLKYAT--PSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRF--ED 490 (850)
Q Consensus 415 ~Vr~~~a~alg~L~~~~~--~~~v~~li~~l~~~~~~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~--d~ 490 (850)
.||..++.++|...+... .+.+..+++.+...+ .++..+..|+.++..+++.+++.+.+|.+.++..++.... +.
T Consensus 504 ~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~~~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~ 582 (963)
T 2x19_B 504 QLADTVMFTIGALSEWLADHPVMINSVLPLVLHAL-GNPELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIH 582 (963)
T ss_dssp HHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHT-TCGGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHh-CCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCC
Confidence 899999999998876532 344555666666555 3567788899999999988888899999999987765443 23
Q ss_pred chHHHHHHHHHHHHhcCCCh-hhHHhhHHHHHHHHHHhhc----C-CCHHHHHH---HHHHHHHHHHHhCcc--------
Q 003081 491 DKYVSDLFEELWEENTSGDR-VTLQLYLGEIVSLICEGIA----S-SSWSSKRK---SAKAICKLGEILGES-------- 553 (850)
Q Consensus 491 ~~~v~~~~~~v~~~l~~~~~-~~i~~yl~eIl~ll~~~L~----d-~s~~vr~~---aa~alg~la~~~g~~-------- 553 (850)
+...+..+.+....++...+ ....+|++.+++.+...+. . .+.+.+.. ...+++.++..++..
T Consensus 583 ~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~ 662 (963)
T 2x19_B 583 KTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEG 662 (963)
T ss_dssp CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC-----
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccc
Confidence 45667666666666665443 5677899888877776553 2 24555553 445566666665531
Q ss_pred --------------hhhhHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhc
Q 003081 554 --------------LSNYHHVLLESIMKEVP--GRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKK 617 (850)
Q Consensus 554 --------------l~~~l~~llp~L~~~L~--~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~ 617 (850)
+.++.+.++|.+.+.+. ..+.+..+.++.++..++...++.+ .++++.+++.+.+.....
T Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~----~~~l~~~~~~l~~~~~~~ 738 (963)
T 2x19_B 663 PELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDF----APMVPQLCEMLGRMYSTI 738 (963)
T ss_dssp ----------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTT----GGGHHHHHHHHHHHHHHS
T ss_pred cccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccc----cccHHHHHHHHHHHHHcC
Confidence 34467889998887773 2345788999999998887666433 468888888888876553
Q ss_pred CHHHHHHHHHHHHHHHHHcCC
Q 003081 618 IKKYREAAFSCLEQVIKAFRD 638 (850)
Q Consensus 618 ~~~~R~~Al~~Lg~l~~~~~~ 638 (850)
.. ...+..++.++..++.
T Consensus 739 ~~---~~~l~l~~~li~~f~~ 756 (963)
T 2x19_B 739 PQ---ASALDLTRQLVHIFAH 756 (963)
T ss_dssp CC---HHHHHHHHHHHHHHTT
T ss_pred Cc---cHHHHHHHHHHHHhCC
Confidence 21 2467788888886543
No 14
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.75 E-value=1.7e-13 Score=171.85 Aligned_cols=552 Identities=11% Similarity=0.033 Sum_probs=330.8
Q ss_pred HHHHHhhhc--CCchHHHHHHHHhccc--h---hhhhhhhHHhhHHHHHHHh------------hhhhchhhhhHHHHHH
Q 003081 62 ELCNLANEM--GQPDLIYKFMDLANYQ--V---SLNSKRGAAFGFSKIAKQA------------GDALKPHLRLLIPKLV 122 (850)
Q Consensus 62 ~l~~lA~~~--g~p~lv~~fm~la~~~--~---~w~sr~gAa~gl~~I~~~~------------~~~l~p~L~~lvp~L~ 122 (850)
.|..++... +||+++..++.+.++. + ....+.++...|..+.+.. .+.+..+++.+++.+.
T Consensus 108 ~la~i~~~~~p~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~ 187 (971)
T 2x1g_F 108 SLGAYIVHMLGEWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVE 187 (971)
T ss_dssp HHHHHHHHTTCC------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHccccccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555442 6999999999887552 0 1234566666778777642 1334455666666666
Q ss_pred hhcCCC-CH-------hHHHHHHHHHHHhcc--CChHHHHHHHHHHHHHHHHhh----------------CCCChhHHHH
Q 003081 123 RFQYDP-DK-------NVQDAMAHIWKSLVA--DPKRTIDEHLDLIFDDLLIQS----------------GSRLWRSREA 176 (850)
Q Consensus 123 r~~~Dp-~~-------~VR~a~~~iw~~Lv~--d~~~~i~~~~~~Il~~Ll~~l----------------~~~~wRVRea 176 (850)
.+..++ ++ .++..+.+++...+. ..+.. ....+++.++. + .+...++|++
T Consensus 188 ~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~---~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (971)
T 2x1g_F 188 RYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE---GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAES 263 (971)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG---GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHH
T ss_pred HHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc---ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHH
Confidence 555432 11 688888887776554 22211 33556666665 4 1145789999
Q ss_pred HHHHHHHHHccCCchhhhHHHHHHHHHHHHHh-------ccCc---HHHHHHHHHHHHHHHHHHHHhhhccc-CcchhHH
Q 003081 177 SCLSLADIIQGRKFDQVGKHLRRIWTAAFRAM-------DDIK---ETVRTAGDKLCRSVTSLTIRLCDVTL-TEISDAR 245 (850)
Q Consensus 177 a~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~l-------dD~k---~~VR~aA~~~~~~L~~~~~r~~~~~~-~~~~~~~ 245 (850)
+|.++.++++....++..+.+..+++.++.+. .+.+ +.+.....+++..++....+.+.... .......
T Consensus 264 a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 343 (971)
T 2x1g_F 264 CLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELS 343 (971)
T ss_dssp HHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCccccc
Confidence 99999999987554445556666666555432 2222 13333333444444322111111000 0000122
Q ss_pred hHHHHhHHHHhh----ccCCCchhHHHHHHHHHHHHHHHhc------------CcccccchHHHHHHHHHhccccchhhh
Q 003081 246 QSMDIVLPFLLA----EGILSKVDSISKASIGVVMKLVKGA------------GIAIRPHLSDLVSCMLESLSSLEDQGL 309 (850)
Q Consensus 246 ~~l~~lLP~Ll~----~gL~s~~~evr~~a~~~L~~la~~~------------g~~l~P~lp~Lvp~LL~~Ls~~ep~~~ 309 (850)
..+..+++.|+. .|.....+++...++..|..+++.. ...++|+++.+++.++..+.-.+...
T Consensus 344 ~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~- 422 (971)
T 2x1g_F 344 ILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKS- 422 (971)
T ss_dssp HHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTT-
T ss_pred HHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCccc-
Confidence 355566777663 1333446789999999999987622 13468999999999999885322110
Q ss_pred hHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhc----cCCCchHhhHHHHHHHH
Q 003081 310 NYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRS----GIGLNTRVGVASFISLL 385 (850)
Q Consensus 310 nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~----~~~~~tr~~a~~~l~~L 385 (850)
+..+.. .++++++..|.. +.+++..+...+....++.+++.+.+.+.. ...|..|.++...++.+
T Consensus 423 -~~~~d~----~e~~~f~~~R~~------~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~i 491 (971)
T 2x1g_F 423 -LAKWSS----DDLECFRCYRQD------ISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSV 491 (971)
T ss_dssp -TSCSCH----HHHHHHHHHHHH------HHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHT
T ss_pred -ccccCH----hHHHHHHHHHHH------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHH
Confidence 000000 012344455543 246677777777767788888888887764 24678888999999888
Q ss_pred HHHhcccccchHHHHHHHHHHhhhh-cCcHHHHHHHHHHHHHHhhhCC--HHHHHHHHHHHHHhhcCCchhhHHHHHHHH
Q 003081 386 VQKIGMDIKPYTSMLLRLLFPVVKE-EKSAAAKRAFASACASVLKYAT--PSQAQKLIEETAALHIDDKNSQISCAILLK 462 (850)
Q Consensus 386 ~~~~~~~~~py~~~lL~~Ll~~l~~-D~n~~Vr~~~a~alg~L~~~~~--~~~v~~li~~l~~~~~~d~~~r~~~~~~l~ 462 (850)
+..+.....++++.+++ ++..+.. |.++.||..++.++|.+.+... .+.+..+++.+...+ |+..+..++.++.
T Consensus 492 ae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l--~~~v~~~A~~al~ 568 (971)
T 2x1g_F 492 AEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL--NSSMSAQATLGLK 568 (971)
T ss_dssp TTC------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH--HSSCHHHHHHHHH
T ss_pred HhhcChhhhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--ChHHHHHHHHHHH
Confidence 77766666789999998 5555522 5689999999999999877543 344666677666655 3667888899999
Q ss_pred HHHhhchhhhhhhHhhHhHHHHHHhcC--CchHHHHHHHHHHHHhcCCC-hhhHHhhHHHHH----HHHHHhhcCC--CH
Q 003081 463 SYSSVASDVLSGYHAVIVPVIFISRFE--DDKYVSDLFEELWEENTSGD-RVTLQLYLGEIV----SLICEGIASS--SW 533 (850)
Q Consensus 463 al~~~~~~~f~~~~~~vlP~l~~~~~d--~~~~v~~~~~~v~~~l~~~~-~~~i~~yl~eIl----~ll~~~L~d~--s~ 533 (850)
.+++.++..+.+|.+.++..++..... .+...+....+....++... .....+|+..++ +.+...++.+ +.
T Consensus 569 ~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~ 648 (971)
T 2x1g_F 569 ELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTP 648 (971)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CH
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 999988888999999999887655443 33455555445544443322 133445555544 4444444333 34
Q ss_pred HHHHHHHHHHHHHH---HHhCc-------------chhhhHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHhccccc
Q 003081 534 SSKRKSAKAICKLG---EILGE-------------SLSNYHHVLLESIMKEVP--GRLWEGKDALLYAIGSISTSCHKDI 595 (850)
Q Consensus 534 ~vr~~aa~alg~la---~~~g~-------------~l~~~l~~llp~L~~~L~--~r~~~gKe~vL~aL~~l~~~~~~~l 595 (850)
+-+.....+++.++ ..++. .+.++.+.+||.+.+.+. ..+.+..+.++.+++.++...+..+
T Consensus 649 ~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~ 728 (971)
T 2x1g_F 649 AARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSF 728 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--
T ss_pred hhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhc
Confidence 34455555555444 43332 355678899999888874 2356788999999999888766543
Q ss_pred ccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCc
Q 003081 596 SAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDP 639 (850)
Q Consensus 596 ~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~~~ 639 (850)
.++++.+++.+......... ..++..++.++..++.+
T Consensus 729 ----~p~l~~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~ 765 (971)
T 2x1g_F 729 ----QPMLQDLCLFIVASFQTRCC---APTLEISKTAIVMFFKD 765 (971)
T ss_dssp ----CTHHHHHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC-
T ss_pred ----cccHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCC
Confidence 47899999998877654322 45889999999999764
No 15
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.66 E-value=1.2e-12 Score=163.88 Aligned_cols=497 Identities=9% Similarity=0.040 Sum_probs=311.7
Q ss_pred hhhhhhHHhhHHHHHHHhh-hhhchhhhhHHHHHHhhc-------CCCC---HhHHHHHHHHHHHhccCChHHH------
Q 003081 89 LNSKRGAAFGFSKIAKQAG-DALKPHLRLLIPKLVRFQ-------YDPD---KNVQDAMAHIWKSLVADPKRTI------ 151 (850)
Q Consensus 89 w~sr~gAa~gl~~I~~~~~-~~l~p~L~~lvp~L~r~~-------~Dp~---~~VR~a~~~iw~~Lv~d~~~~i------ 151 (850)
-..|+.|+.+|..|++... ....+.+.+++|.+.... .+.+ ..+....+.+|..+.......+
T Consensus 258 ~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 337 (971)
T 2x1g_F 258 NELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITS 337 (971)
T ss_dssp HHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3567888899999988532 223355667777765421 3334 3777888999888774332222
Q ss_pred -----HHHHHHHHHHHHHhhCC-----CChhHHHHHHHHHHHHHcc--------C---CchhhhHHHHHHHHHHHHHhc-
Q 003081 152 -----DEHLDLIFDDLLIQSGS-----RLWRSREASCLSLADIIQG--------R---KFDQVGKHLRRIWTAAFRAMD- 209 (850)
Q Consensus 152 -----~~~~~~Il~~Ll~~l~~-----~~wRVReaa~~Al~~Ll~~--------~---~~~~l~~~L~~i~~~l~~~ld- 209 (850)
..++..+++.++....+ .+.+|+..++.....+.+. . ..+.+.+++.++++.++..+.
T Consensus 338 ~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 417 (971)
T 2x1g_F 338 ADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQ 417 (971)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 36788899988886633 4678999998887666541 1 124567899999998888772
Q ss_pred --cC-----c-------HHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCC-----CchhHHHHH
Q 003081 210 --DI-----K-------ETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGIL-----SKVDSISKA 270 (850)
Q Consensus 210 --D~-----k-------~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~-----s~~~evr~~ 270 (850)
|. . ...|.++..++..+... + ...++..+++++.+ .+. +.+|..++.
T Consensus 418 p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~----~---------~~~~l~~~~~~l~~-~l~~~~~~~~~w~~~ea 483 (971)
T 2x1g_F 418 PDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDV----L---------NDYILEILAAMLDE-AIADLQRHPTHWTKLEA 483 (971)
T ss_dssp CCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTT----C---------TTHHHHHHHHHHHH-HHHHHHHCTTCCHHHHH
T ss_pred CCcccccccCHhHHHHHHHHHHHHHHHHHHHHHH----H---------hHHHHHHHHHHHHH-HHHhccCCCCcHHHHHH
Confidence 11 1 13455554444333211 1 12356666666542 122 256888999
Q ss_pred HHHHHHHHHHhcCcccccchHHHHHHHHHhcc-ccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhh
Q 003081 271 SIGVVMKLVKGAGIAIRPHLSDLVSCMLESLS-SLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINV 349 (850)
Q Consensus 271 a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls-~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ 349 (850)
++.+++.+++.+.....+++|.+++.+.+..+ +..|.+..-. ..++..+..+
T Consensus 484 al~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a---------------------------~~~l~~~~~~ 536 (971)
T 2x1g_F 484 CIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTA---------------------------LETMGSYCNW 536 (971)
T ss_dssp HHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHH---------------------------HHHHHHTHHH
T ss_pred HHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHH---------------------------HHHHHHHHHH
Confidence 99999999988877778999999994433332 2233322111 1233333333
Q ss_pred cC--hhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhc--CcHHHHHHHHHHHH
Q 003081 350 VD--TESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEE--KSAAAKRAFASACA 425 (850)
Q Consensus 350 ld--~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D--~n~~Vr~~~a~alg 425 (850)
+. .+.++.++|.+...+ + .+.+..|+..+..|+..++..+.||.+.+++.+...+ +. -...++..+..++|
T Consensus 537 l~~~~~~l~~vl~~l~~~l-~---~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l-~~~~~~~~~~~~~~~ai~ 611 (971)
T 2x1g_F 537 LMENPAYIPPAINLLVRGL-N---SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASL-NTGRMKNSDSVRLMFSIG 611 (971)
T ss_dssp HC----CHHHHHHHHHHHH-H---SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-HSTTSCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHh-C---hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH-cCCCCChHHHHHHHHHHH
Confidence 22 245777888888877 3 4567889999999999999999999999999999998 43 24678888999999
Q ss_pred HHhhhCCHHH----HHHHHHHHHHhhc---C----CchhhHHHHHHHHHHH---hhc-------------hhhhhhhHhh
Q 003081 426 SVLKYATPSQ----AQKLIEETAALHI---D----DKNSQISCAILLKSYS---SVA-------------SDVLSGYHAV 478 (850)
Q Consensus 426 ~L~~~~~~~~----v~~li~~l~~~~~---~----d~~~r~~~~~~l~al~---~~~-------------~~~f~~~~~~ 478 (850)
.++...+.+. +..+++.+.+.+. + +++.+......+..++ ... ++.+.++.+.
T Consensus 612 ~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 691 (971)
T 2x1g_F 612 KLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQR 691 (971)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHH
Confidence 9988665333 3444444444331 1 2223333333333322 211 2356778888
Q ss_pred HhHHHHHHh--cCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcc--h
Q 003081 479 IVPVIFISR--FEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGES--L 554 (850)
Q Consensus 479 vlP~l~~~~--~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~--l 554 (850)
++|++.... +..++.+.+....+|..++...+..+.+|++.+++.+...+..... ......++.++..+|.. .
T Consensus 692 i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~~~ 768 (971)
T 2x1g_F 692 TMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC---APTLEISKTAIVMFFKDEGC 768 (971)
T ss_dssp THHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC----
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCcch
Confidence 999876432 3345677777778888876655566789999999999988766432 34667788888877763 3
Q ss_pred hhhH----HHHHHHHHHhcCC-------CChhhHHHHHHHHHHHHHhcccccccCCCCc-hHHHHHHHHHHHhhcCHHHH
Q 003081 555 SNYH----HVLLESIMKEVPG-------RLWEGKDALLYAIGSISTSCHKDISAEDPTT-PFAIVDMVSSACRKKIKKYR 622 (850)
Q Consensus 555 ~~~l----~~llp~L~~~L~~-------r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~-~~~i~~~l~~e~~r~~~~~R 622 (850)
.+.+ ..+.....+.+.. ..++.++..+.-+..++..+...+-. .+. ++.+++..+..++-......
T Consensus 769 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~--s~~~l~~i~~~~~~~l~~~~~~~~ 846 (971)
T 2x1g_F 769 KPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLED--KTLAYDRLVFYAQRGMTLPESGAI 846 (971)
T ss_dssp -HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGC--TTSCHHHHHHHHHHHHTSSCSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcC--CcccHHHHHHHHHHHcCCCCHHHH
Confidence 3333 3333333333322 24678888888888988887766532 356 78899988888877777777
Q ss_pred HHHHHHHHHHHHHc
Q 003081 623 EAAFSCLEQVIKAF 636 (850)
Q Consensus 623 ~~Al~~Lg~l~~~~ 636 (850)
+.++..+..++..-
T Consensus 847 ~s~~~fl~~~i~~~ 860 (971)
T 2x1g_F 847 RNSIQFLTHFVMQS 860 (971)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC
Confidence 88888888877653
No 16
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.62 E-value=7e-13 Score=150.57 Aligned_cols=399 Identities=9% Similarity=0.020 Sum_probs=261.9
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHH--HHHHHHHHHhccC-cHHHHHHHHHHHHHHHHHHHHhhh
Q 003081 159 FDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLR--RIWTAAFRAMDDI-KETVRTAGDKLCRSVTSLTIRLCD 235 (850)
Q Consensus 159 l~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~--~i~~~l~~~ldD~-k~~VR~aA~~~~~~L~~~~~r~~~ 235 (850)
++.++..+.+.+..+|+.|+.++..++.....+.+...+. .+++.+.+.+.+. .+.||..|..++..++..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~------ 95 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASG------ 95 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSS------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcC------
Confidence 7888888888899999999999999876322222333443 5788888888877 789998876555544321
Q ss_pred cccCcchhHHhHH-HHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHH
Q 003081 236 VTLTEISDARQSM-DIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIEL 314 (850)
Q Consensus 236 ~~~~~~~~~~~~l-~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~ 314 (850)
.+.....++ ..++|.|+. -+.++++++|..++.+|++++...... +..
T Consensus 96 ----~~~~~~~~~~~~~i~~L~~-lL~~~~~~vr~~a~~~L~~l~~~~~~~-~~~------------------------- 144 (450)
T 2jdq_A 96 ----NSLQTRIVIQAGAVPIFIE-LLSSEFEDVQEQAVWALGNIAGDSTMC-RDY------------------------- 144 (450)
T ss_dssp ----CHHHHHHHHHTTHHHHHHH-HTTCSCHHHHHHHHHHHHHHHTTCHHH-HHH-------------------------
T ss_pred ----CHHHHHHHHhCCCHHHHHH-HHcCCCHHHHHHHHHHHHHHccCCHHH-HHH-------------------------
Confidence 000111122 346777763 355678899999999999986421100 000
Q ss_pred hhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHh-cccc
Q 003081 315 HAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKI-GMDI 393 (850)
Q Consensus 315 ~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~-~~~~ 393 (850)
++. ...+|.+.+.+++......|..++.++..++... +..-
T Consensus 145 -------------------------------~~~-------~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 186 (450)
T 2jdq_A 145 -------------------------------VLD-------CNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPE 186 (450)
T ss_dssp -------------------------------HHH-------TTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred -------------------------------HHH-------CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCC
Confidence 000 1234555555553223455667777777776433 2222
Q ss_pred cchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHH--H--HHHHHHHHHhhc-CCchhhHHHHHHHHHHHhhc
Q 003081 394 KPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQ--A--QKLIEETAALHI-DDKNSQISCAILLKSYSSVA 468 (850)
Q Consensus 394 ~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~--v--~~li~~l~~~~~-~d~~~r~~~~~~l~al~~~~ 468 (850)
..+...+++.++..+ .+.++.++..++.+++++....++.. + ...++.+...+. .|+..|..++.+++.++...
T Consensus 187 ~~~~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 265 (450)
T 2jdq_A 187 FAKVSPCLNVLSWLL-FVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGD 265 (450)
T ss_dssp GGGTGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCC
Confidence 233466788888888 67889999999999999987543211 1 135666666664 45667888888888887765
Q ss_pred hhhhhhhH-hhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhH-HHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 003081 469 SDVLSGYH-AVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYL-GEIVSLICEGIASSSWSSKRKSAKAICKL 546 (850)
Q Consensus 469 ~~~f~~~~-~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl-~eIl~ll~~~L~d~s~~vr~~aa~alg~l 546 (850)
++...... ..++|.+.....++++.++.....++..++.+......... ..+++.+...+.++++.+|..|+.+|+.+
T Consensus 266 ~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l 345 (450)
T 2jdq_A 266 DIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNA 345 (450)
T ss_dssp HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 54333322 24777777667777888998888888888876554444444 36788888888899999999999999999
Q ss_pred HHHhCcc-hhhhH-HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccc---cCCCCchHHH-----HHHHHHHHhh
Q 003081 547 GEILGES-LSNYH-HVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDIS---AEDPTTPFAI-----VDMVSSACRK 616 (850)
Q Consensus 547 a~~~g~~-l~~~l-~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~---~~~~~~~~~i-----~~~l~~e~~r 616 (850)
+...... ....+ ..++|.|.+.+...++..++.++.+|..++........ ....++...+ ++.+..-...
T Consensus 346 ~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~ 425 (450)
T 2jdq_A 346 TSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSH 425 (450)
T ss_dssp HHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCH
T ss_pred HcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcC
Confidence 9763322 22222 35889999999888899999999999999876542110 0012344444 3445444455
Q ss_pred cCHHHHHHHHHHHHHHH
Q 003081 617 KIKKYREAAFSCLEQVI 633 (850)
Q Consensus 617 ~~~~~R~~Al~~Lg~l~ 633 (850)
.+..+|..|+..+..+.
T Consensus 426 ~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 426 ENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC
Confidence 66778888887777665
No 17
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.61 E-value=1.4e-11 Score=154.01 Aligned_cols=525 Identities=9% Similarity=0.010 Sum_probs=326.3
Q ss_pred chHHHHHHHhhhcCC-----chHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhh-hhhchhhhhHHHHHHhh-------
Q 003081 58 STYKELCNLANEMGQ-----PDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAG-DALKPHLRLLIPKLVRF------- 124 (850)
Q Consensus 58 styk~l~~lA~~~g~-----p~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~-~~l~p~L~~lvp~L~r~------- 124 (850)
.+.+++.+... +|. +.++..+.... ..|..|..|+-+|..|+.+.. ....+++..++|.++..
T Consensus 221 ~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l---~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 296 (963)
T 2x19_B 221 KVLKCFSSWVQ-LEVPLQDCEALIQAAFAAL---QDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQA 296 (963)
T ss_dssp HHHHHHHHHHT-SSCCGGGTHHHHHHHHHHT---TSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCcccchHHHHHHHHHh---CCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHH
Confidence 45566655544 444 23444444333 247788899999999887532 22345666666666543
Q ss_pred cCCCCHhHHHHHHHHHHHhccCChHHH------HHHHHHHHHHHHHhhCC-----CChhHHHHHHHHHHHHHcc------
Q 003081 125 QYDPDKNVQDAMAHIWKSLVADPKRTI------DEHLDLIFDDLLIQSGS-----RLWRSREASCLSLADIIQG------ 187 (850)
Q Consensus 125 ~~Dp~~~VR~a~~~iw~~Lv~d~~~~i------~~~~~~Il~~Ll~~l~~-----~~wRVReaa~~Al~~Ll~~------ 187 (850)
..+.+....+..+.+...+.......+ ..++..+++.++....+ .+++++..++.-...+++.
T Consensus 297 ~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~ 376 (963)
T 2x19_B 297 VQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEA 376 (963)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhh
Confidence 122334555555665555543222222 35777888888877664 3567766665544555441
Q ss_pred ----CCchhhhHHHHHHHHHHHHHhccC------------cH---HHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHH
Q 003081 188 ----RKFDQVGKHLRRIWTAAFRAMDDI------------KE---TVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSM 248 (850)
Q Consensus 188 ----~~~~~l~~~L~~i~~~l~~~ldD~------------k~---~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l 248 (850)
.....+.+++.++++.++..|.-. .+ ..|.++..++..+.... ...++
T Consensus 377 ~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~-------------~~~~l 443 (963)
T 2x19_B 377 EKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEML-------------GAELL 443 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH-------------THHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHc-------------cHHHH
Confidence 113346788889988888776211 01 22455444444333221 22355
Q ss_pred HHhHHHHhhccC----CCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchh
Q 003081 249 DIVLPFLLAEGI----LSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTE 324 (850)
Q Consensus 249 ~~lLP~Ll~~gL----~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d 324 (850)
..+++++.. .+ .+.+|..++.++.+++.++..+.....++++.+++.+.+... ..|.+..-.
T Consensus 444 ~~~~~~l~~-~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~-~~~~vr~~~------------ 509 (963)
T 2x19_B 444 SNLYDKLGR-LLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISI-SNVQLADTV------------ 509 (963)
T ss_dssp HHHHHHHHH-HHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCC-CSHHHHHHH------------
T ss_pred HHHHHHHHH-HHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCC-CcHHHHHHH------------
Confidence 556665542 23 346788999999999999998877778999999986554332 233221111
Q ss_pred hhHHHHHhhccCCcHHHHHHHHHhhc--ChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHH
Q 003081 325 KLENLRISIAKGSPMWDTLDLCINVV--DTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLR 402 (850)
Q Consensus 325 ~id~~r~~~~~~s~l~eal~~~~~~l--d~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~ 402 (850)
+.+++....++ ..+.++.+++.+...+++ .+.+..|+..+..++..++..+.||.+.+++
T Consensus 510 ---------------~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~---~~V~~~A~~al~~l~~~~~~~l~p~~~~il~ 571 (963)
T 2x19_B 510 ---------------MFTIGALSEWLADHPVMINSVLPLVLHALGN---PELSVSSVSTLKKICRECKYDLPPYAANIVA 571 (963)
T ss_dssp ---------------HHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC---GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHH
T ss_pred ---------------HHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC---chHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 12233332222 234567788888887754 3567789999999999999999999999999
Q ss_pred HHHHhhhh-cCcHHHHHHHHHHHHHHhhhCCHHHHHHH----HHHHHHhhc----C--CchhhH---HHHHHHHHHHhhc
Q 003081 403 LLFPVVKE-EKSAAAKRAFASACASVLKYATPSQAQKL----IEETAALHI----D--DKNSQI---SCAILLKSYSSVA 468 (850)
Q Consensus 403 ~Ll~~l~~-D~n~~Vr~~~a~alg~L~~~~~~~~v~~l----i~~l~~~~~----~--d~~~r~---~~~~~l~al~~~~ 468 (850)
.+...+.. +-+...+..+..|+|.++...+.+...++ ++.+.+.+. . +++.+. ....++..+.+..
T Consensus 572 ~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~ 651 (963)
T 2x19_B 572 VSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTL 651 (963)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 99998832 23567888889999999987764444444 433333331 1 333333 2333444444432
Q ss_pred h----------------------hhhhhhHhhHhHHHHHHh--cCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHH
Q 003081 469 S----------------------DVLSGYHAVIVPVIFISR--FEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLI 524 (850)
Q Consensus 469 ~----------------------~~f~~~~~~vlP~l~~~~--~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll 524 (850)
+ +.+.++...++|.+.... +..+.++.+.....|..++...+..+.+|++.+++.+
T Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l 731 (963)
T 2x19_B 652 DISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEML 731 (963)
T ss_dssp CSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHH
T ss_pred CCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHH
Confidence 2 225567778888765432 2335567777777887766555556779999998887
Q ss_pred HHhhcC-CCHHHHHHHHHHHHHHHHHhC--cchhhhHHHHHHHHHHh----cC---CCChhhHHHHHHHHHHHHHhcccc
Q 003081 525 CEGIAS-SSWSSKRKSAKAICKLGEILG--ESLSNYHHVLLESIMKE----VP---GRLWEGKDALLYAIGSISTSCHKD 594 (850)
Q Consensus 525 ~~~L~d-~s~~vr~~aa~alg~la~~~g--~~l~~~l~~llp~L~~~----L~---~r~~~gKe~vL~aL~~l~~~~~~~ 594 (850)
...... +.. .....++.++..+| +.+.++++.++..+.+. +. ...++.+...+..+..++..+...
T Consensus 732 ~~~~~~~~~~----~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~ 807 (963)
T 2x19_B 732 GRMYSTIPQA----SALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDL 807 (963)
T ss_dssp HHHHHHSCCH----HHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHcCCcc----HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHH
Confidence 766443 222 34456777777433 33445555554444333 21 234789999999999999988866
Q ss_pred cccCCCCc-hHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcC
Q 003081 595 ISAEDPTT-PFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFR 637 (850)
Q Consensus 595 l~~~~~~~-~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~ 637 (850)
+-. ++. ...+++.+.+.++..+..+.+.++..+..++...+
T Consensus 808 ~~~--~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~ 849 (963)
T 2x19_B 808 FLC--ERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCG 849 (963)
T ss_dssp GGC--TTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTT
T ss_pred HcC--CcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC
Confidence 542 344 88899999999998889999999999999887654
No 18
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.61 E-value=1.7e-12 Score=162.40 Aligned_cols=440 Identities=10% Similarity=0.063 Sum_probs=268.6
Q ss_pred hhhc--hhhhhHH-HHHHhhcC-----------CCC------------HhHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Q 003081 108 DALK--PHLRLLI-PKLVRFQY-----------DPD------------KNVQDAMAHIWKSLVADPKRTIDEHLDLIFDD 161 (850)
Q Consensus 108 ~~l~--p~L~~lv-p~L~r~~~-----------Dp~------------~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~ 161 (850)
..+. |++.+++ +.++.++. ||+ -.+|.++.+....++...+ +..++.+++.
T Consensus 327 ~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~---~~v~~~~l~~ 403 (960)
T 1wa5_C 327 EIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE---VLVTNIFLAH 403 (960)
T ss_dssp GGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH---HHHHHHHHHH
T ss_pred HHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc---hhHHHHHHHH
Confidence 3455 8888888 67766542 222 2577788887777775432 3445666666
Q ss_pred HHHhhC------CCChhHHHHHHHHHHHHHccC-C----ch------hhhHHHHHHHHHHHHHhccC---cHHHHHHHHH
Q 003081 162 LLIQSG------SRLWRSREASCLSLADIIQGR-K----FD------QVGKHLRRIWTAAFRAMDDI---KETVRTAGDK 221 (850)
Q Consensus 162 Ll~~l~------~~~wRVReaa~~Al~~Ll~~~-~----~~------~l~~~L~~i~~~l~~~ldD~---k~~VR~aA~~ 221 (850)
+...+. +.+||.|++|..|++.+.++. . .. ++.+++.+ .++..+.|. ++.||.+|.
T Consensus 404 i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~---~v~p~l~~~~~~~p~vr~~a~- 479 (960)
T 1wa5_C 404 MKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTK---EIAPDLTSNNIPHIILRVDAI- 479 (960)
T ss_dssp HHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHH---HTHHHHHCSSCSCHHHHHHHH-
T ss_pred HHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHH---HhHHHhcCCCCCCceehHHHH-
Confidence 665555 678999999999999998642 1 11 34444332 233444566 899999874
Q ss_pred HHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHh-----------cCcccccch
Q 003081 222 LCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKG-----------AGIAIRPHL 290 (850)
Q Consensus 222 ~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~-----------~g~~l~P~l 290 (850)
+.++++. +-- ..+.+..++|.++ +++.+++..||..|+.++..++.. ....+.||+
T Consensus 480 --~~lg~~~----~~~------~~~~l~~~l~~l~-~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l 546 (960)
T 1wa5_C 480 --KYIYTFR----NQL------TKAQLIELMPILA-TFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNST 546 (960)
T ss_dssp --HHHHHTG----GGS------CHHHHHHHHHHHH-HHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTH
T ss_pred --HHHHHHH----hhC------CHHHHHHHHHHHH-HHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhH
Confidence 6665443 110 1246788888888 478777889999999999999874 245699999
Q ss_pred HHHHHHHHHhccccc--hhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhc
Q 003081 291 SDLVSCMLESLSSLE--DQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRS 368 (850)
Q Consensus 291 p~Lvp~LL~~Ls~~e--p~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~ 368 (850)
++|++.|+..+.... |+. .
T Consensus 547 ~~ll~~L~~ll~~~~~~~~~-----------------~------------------------------------------ 567 (960)
T 1wa5_C 547 EILLKNLIALILKHGSSPEK-----------------L------------------------------------------ 567 (960)
T ss_dssp HHHHHHHHHHHHTTCCCHHH-----------------H------------------------------------------
T ss_pred HHHHHHHHHHHHhccCCCCc-----------------c------------------------------------------
Confidence 999999998886320 100 0
Q ss_pred cCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhh----hcCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHH
Q 003081 369 GIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVK----EEKSAAAKRAFASACASVLKYATPSQAQKLIEETA 444 (850)
Q Consensus 369 ~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~----~D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~ 444 (850)
.....+..++..++...+..+.||.+.+++.+...+. +..+...+.....+++.+++..+++....+.+.+.
T Consensus 568 ----~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~ 643 (960)
T 1wa5_C 568 ----AENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMM 643 (960)
T ss_dssp ----TSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHH
T ss_pred ----cccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 0001223334444555567788888888777776663 12456676667788999888755554444444433
Q ss_pred H----hhcCC-chhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHH--HHhcCCchHHHHHHHHHHHHhcCCChhhHHhhH
Q 003081 445 A----LHIDD-KNSQISCAILLKSYSSVASDVLSGYHAVIVPVIF--ISRFEDDKYVSDLFEELWEENTSGDRVTLQLYL 517 (850)
Q Consensus 445 ~----~~~~d-~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~--~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl 517 (850)
. .+..+ .+....+..++..+.... +.|.+++..++|.++ ...... ..+. .....+..........+.. +
T Consensus 644 p~~~~iL~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~-~~~~-~~~~~L~~~~~~~~~~~~~-~ 719 (960)
T 1wa5_C 644 PTFLTVFSEDIQEFIPYVFQIIAFVVEQS-ATIPESIKPLAQPLLAPNVWELK-GNIP-AVTRLLKSFIKTDSSIFPD-L 719 (960)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHHHHHHHC-SSCCTTTGGGHHHHTSGGGGCCT-TTHH-HHHHHHHHHHHHHGGGCSC-S
T ss_pred HHHHHHHHhhhHhhHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHcCHHHhcCC-CCch-hHHHHHHHHHHhChHHHHH-H
Confidence 3 22222 234555677777777666 567788888888776 322221 1222 1222332222111111111 2
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcc-hhhhHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHhcccc-
Q 003081 518 GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGES-LSNYHHVLLESIMKEVPG-RLWEGKDALLYAIGSISTSCHKD- 594 (850)
Q Consensus 518 ~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~-l~~~l~~llp~L~~~L~~-r~~~gKe~vL~aL~~l~~~~~~~- 594 (850)
+.++..+...+.+.. .+..+...+++++..+|.. +.||++.+++.+.+.+.. ++...+...+..++.++.+.+..
T Consensus 720 ~~~l~~~~~~~~~~~--~~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 797 (960)
T 1wa5_C 720 VPVLGIFQRLIASKA--YEVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDF 797 (960)
T ss_dssp HHHHHHHHHHHTCTT--THHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHhCCCc--ccchHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHcCHHH
Confidence 446666666666655 3488999999999999988 999999999999999953 45555555666666665443321
Q ss_pred ----cccCCCC-chHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHc
Q 003081 595 ----ISAEDPT-TPFAIVDMVSSACRK-KIKKYREAAFSCLEQVIKAF 636 (850)
Q Consensus 595 ----l~~~~~~-~~~~i~~~l~~e~~r-~~~~~R~~Al~~Lg~l~~~~ 636 (850)
+..-.+. |...+.+..+....+ ....-|+.++..++.++...
T Consensus 798 ~~~~l~~i~~~~f~~~~~~~w~~~~~~~~~~~erk~~~~gl~~ll~~~ 845 (960)
T 1wa5_C 798 LIHFIDEVQDGLFQQIWGNFIITTLPTIGNLLDRKIALIGVLNMVING 845 (960)
T ss_dssp HHHHHHTTSTTHHHHHHHHTHHHHGGGCCSHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcchhHHHHHHHHHhccchhhccCHHHHHHHHHHHHHHHhcc
Confidence 0000111 223233333444433 34677999999999888754
No 19
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.57 E-value=3.9e-13 Score=152.68 Aligned_cols=393 Identities=10% Similarity=0.040 Sum_probs=251.2
Q ss_pred HHHHHhhcCCCCHhHHHHHHHHHHHhcc-CChHHHHHHHH--HHHHHHHHhhCCC-ChhHHHHHHHHHHHHHccCCchhh
Q 003081 118 IPKLVRFQYDPDKNVQDAMAHIWKSLVA-DPKRTIDEHLD--LIFDDLLIQSGSR-LWRSREASCLSLADIIQGRKFDQV 193 (850)
Q Consensus 118 vp~L~r~~~Dp~~~VR~a~~~iw~~Lv~-d~~~~i~~~~~--~Il~~Ll~~l~~~-~wRVReaa~~Al~~Ll~~~~~~~l 193 (850)
+|.|.....++++.||..+......+.. .....++..+. .+++.|+..+.+. ++.+|..++.+++.+..+.+. ..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~-~~ 100 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSL-QT 100 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHH-HH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH-HH
Confidence 7788888889999999999888877643 11112444454 5888899999888 799999999999999875431 11
Q ss_pred hHHH-HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHH-HHhHHHHhhccCCC-chhHHHHH
Q 003081 194 GKHL-RRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSM-DIVLPFLLAEGILS-KVDSISKA 270 (850)
Q Consensus 194 ~~~L-~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l-~~lLP~Ll~~gL~s-~~~evr~~ 270 (850)
.... ..+++.+++++.+..+.||..|..++..++... +.....++ ..++|.|+. -+.+ .++++|..
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~----------~~~~~~~~~~~~i~~L~~-~l~~~~~~~v~~~ 169 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDS----------TMCRDYVLDCNILPPLLQ-LFSKQNRLTMTRN 169 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC----------HHHHHHHHHTTCHHHHHH-HTTSCCCHHHHHH
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCC----------HHHHHHHHHCCCHHHHHH-HhcCCCCHHHHHH
Confidence 1111 357888999999999999998875555553210 00011122 245676663 2443 57899999
Q ss_pred HHHHHHHHHHhc-CcccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhh
Q 003081 271 SIGVVMKLVKGA-GIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINV 349 (850)
Q Consensus 271 a~~~L~~la~~~-g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ 349 (850)
++.++++++... ...-......++|.|+..+.+.++.+.....+...... ...+ +....+.
T Consensus 170 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~--------------~~~~--~~~~~~~-- 231 (450)
T 2jdq_A 170 AVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLS--------------DGPN--DKIQAVI-- 231 (450)
T ss_dssp HHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHT--------------SSSH--HHHHHHH--
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH--------------CCCc--HHHHHHH--
Confidence 999999999764 22223455788999999998655544322222211110 0000 0000000
Q ss_pred cChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHH-HHHHHHHHhhhhcCcHHHHHHHHHHHHHHh
Q 003081 350 VDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTS-MLLRLLFPVVKEEKSAAAKRAFASACASVL 428 (850)
Q Consensus 350 ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~-~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~ 428 (850)
-..++|.|.+.+++. ....+..++..+..++...+.......+ .+++.++..+ .+.++.+|+.++.+++.+.
T Consensus 232 -----~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~vr~~a~~~L~~l~ 304 (450)
T 2jdq_A 232 -----DAGVCRRLVELLMHN-DYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLL-SSPKESIKKEACWTISNIT 304 (450)
T ss_dssp -----HTTTHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHT
T ss_pred -----HcCcHHHHHHHHCCC-chhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHH-cCCCHHHHHHHHHHHHHHH
Confidence 124678888888754 4567778888888876543221111121 4788888888 6789999999999999998
Q ss_pred hhCCHHH---H-HHHHHHHHHhhc-CCchhhHHHHHHHHHHHhh-chhhhhhhH-hhHhHHHHHHhcCCchHHHHHHHHH
Q 003081 429 KYATPSQ---A-QKLIEETAALHI-DDKNSQISCAILLKSYSSV-ASDVLSGYH-AVIVPVIFISRFEDDKYVSDLFEEL 501 (850)
Q Consensus 429 ~~~~~~~---v-~~li~~l~~~~~-~d~~~r~~~~~~l~al~~~-~~~~f~~~~-~~vlP~l~~~~~d~~~~v~~~~~~v 501 (850)
...++.. + ..+++.+...+. +++..|..++.++..++.. .++....+. ..++|.++....+.++.++......
T Consensus 305 ~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a 384 (450)
T 2jdq_A 305 AGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNG 384 (450)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHH
Confidence 7543221 1 245566666654 4667788888888888765 344444333 3477877766667777888776666
Q ss_pred HHHhcCCChh-------hHHhhHHHH-----HHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 003081 502 WEENTSGDRV-------TLQLYLGEI-----VSLICEGIASSSWSSKRKSAKAICKLG 547 (850)
Q Consensus 502 ~~~l~~~~~~-------~i~~yl~eI-----l~ll~~~L~d~s~~vr~~aa~alg~la 547 (850)
+..+....+. .+.+|.+.+ ++.+...+.+++..++..|..++..+.
T Consensus 385 L~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 385 LENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 5554432211 123566665 456666677788889988887777654
No 20
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.55 E-value=1.6e-12 Score=151.67 Aligned_cols=404 Identities=12% Similarity=0.071 Sum_probs=247.8
Q ss_pred hhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCC-hHHHHHHH-HHHHHHHHHhhCCC-ChhHHHHHHHHHHHHHccCCc
Q 003081 114 LRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADP-KRTIDEHL-DLIFDDLLIQSGSR-LWRSREASCLSLADIIQGRKF 190 (850)
Q Consensus 114 L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~-~~~i~~~~-~~Il~~Ll~~l~~~-~wRVReaa~~Al~~Ll~~~~~ 190 (850)
+...+|.|+..+.++++.+|..+...+..+.... ...+.... ..+++.|+..+.++ ++.+|..++.+|+++..+.+
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~- 163 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS- 163 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH-
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH-
Confidence 4456788888889999999999988888776431 11223222 35788899999887 89999999999999987642
Q ss_pred hhhhHHH--HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHh-HHHHhHHHHhhccCCCchhHH
Q 003081 191 DQVGKHL--RRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQ-SMDIVLPFLLAEGILSKVDSI 267 (850)
Q Consensus 191 ~~l~~~L--~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~-~l~~lLP~Ll~~gL~s~~~ev 267 (850)
.....+ ..+++.+++++.+..+.||..|..++..++... + ..... .-..++|.|+. -+.+...++
T Consensus 164 -~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~-----~-----~~~~~~~~~~~l~~L~~-ll~~~~~~v 231 (530)
T 1wa5_B 164 -AQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDS-----T-----DYRDYVLQCNAMEPILG-LFNSNKPSL 231 (530)
T ss_dssp -HHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTC-----H-----HHHHHHHHTTCHHHHHH-GGGSCCHHH
T ss_pred -HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-----c-----cchHHHHHcCcHHHHHH-HhccCCHHH
Confidence 122222 356778888888888999998865555443210 0 00111 11246777663 244567889
Q ss_pred HHHHHHHHHHHHHhc-CcccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHH
Q 003081 268 SKASIGVVMKLVKGA-GIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLC 346 (850)
Q Consensus 268 r~~a~~~L~~la~~~-g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~ 346 (850)
+..++.+|..++... ...-......++|.|+..+.+.++.
T Consensus 232 ~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~--------------------------------------- 272 (530)
T 1wa5_B 232 IRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTE--------------------------------------- 272 (530)
T ss_dssp HHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHH---------------------------------------
T ss_pred HHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHH---------------------------------------
Confidence 999999999998654 2211223344555555555432221
Q ss_pred HhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHH-HHHHHHHHhhhhcCcHHHHHHHHHHHH
Q 003081 347 INVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTS-MLLRLLFPVVKEEKSAAAKRAFASACA 425 (850)
Q Consensus 347 ~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~-~lL~~Ll~~l~~D~n~~Vr~~~a~alg 425 (850)
.+..++.+|..|+...+..+....+ .+++.++..+ .+.+..|+..++.+++
T Consensus 273 ---------------------------v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL-~~~~~~v~~~a~~~L~ 324 (530)
T 1wa5_B 273 ---------------------------TLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL-SHESTLVQTPALRAVG 324 (530)
T ss_dssp ---------------------------HHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGG-GCSCHHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHH-CCCChhhHHHHHHHHH
Confidence 2222333333322111111111111 3466677777 5788899999888888
Q ss_pred HHhhhCCHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHh
Q 003081 426 SVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEEN 505 (850)
Q Consensus 426 ~L~~~~~~~~v~~li~~l~~~~~~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l 505 (850)
.++...+. . . ..+. ...++|.+.....++++.++..+...+..+
T Consensus 325 ~l~~~~~~-~------------------~-------~~~~----------~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l 368 (530)
T 1wa5_B 325 NIVTGNDL-Q------------------T-------QVVI----------NAGVLPALRLLLSSPKENIKKEACWTISNI 368 (530)
T ss_dssp HHTTSCHH-H------------------H-------HHHH----------HTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHcCCHH-H------------------H-------HHHH----------HcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 87643210 0 0 0010 012455555555666778888888888888
Q ss_pred cCCChhhHHhhH-HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCc--chhhhH--HHHHHHHHHhcCCCChhhHHHH
Q 003081 506 TSGDRVTLQLYL-GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGE--SLSNYH--HVLLESIMKEVPGRLWEGKDAL 580 (850)
Q Consensus 506 ~~~~~~~i~~yl-~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~--~l~~~l--~~llp~L~~~L~~r~~~gKe~v 580 (850)
+.+....++.++ ..+++.+...+.++++.+|..|+.+|+.++...+. ....++ ..++|.|...+....+..++.+
T Consensus 369 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a 448 (530)
T 1wa5_B 369 TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT 448 (530)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHH
Confidence 776554444433 34677777888889999999999999999986543 333332 2478899999988889999999
Q ss_pred HHHHHHHHHhcccccc---cCCCCchHHH-----HHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 003081 581 LYAIGSISTSCHKDIS---AEDPTTPFAI-----VDMVSSACRKKIKKYREAAFSCLEQVI 633 (850)
Q Consensus 581 L~aL~~l~~~~~~~l~---~~~~~~~~~i-----~~~l~~e~~r~~~~~R~~Al~~Lg~l~ 633 (850)
+.+|..++........ ....++...+ ++.+..-....+..++..|...+..+.
T Consensus 449 l~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 449 LDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 509 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 9999999876543110 0011233322 334444444556666666666665544
No 21
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.55 E-value=2.1e-12 Score=152.93 Aligned_cols=405 Identities=10% Similarity=0.070 Sum_probs=265.4
Q ss_pred hHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhH
Q 003081 116 LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGK 195 (850)
Q Consensus 116 ~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~ 195 (850)
.++|.+.+.+.++++.+|+...-.|..+.... ++....+++.+.+.++|+++-+|..|..+++.+. .+++.
T Consensus 49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~----~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~----~~~~~- 119 (591)
T 2vgl_B 49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ----PDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR----VDKIT- 119 (591)
T ss_dssp GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS----HHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC----SGGGH-
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC----chHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC----hHHHH-
Confidence 35666667789999999999988888776421 2334456678888899999999999988888773 23343
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHH
Q 003081 196 HLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVV 275 (850)
Q Consensus 196 ~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L 275 (850)
+.+.+.+.+++.|.++.||+.|..++..+.+. .+. .... ..++|.|. .-+.++++.|+..|+.++
T Consensus 120 --~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~-----~p~-----~~~~--~~~~~~l~-~lL~d~d~~V~~~A~~aL 184 (591)
T 2vgl_B 120 --EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDI-----NAQ-----MVED--QGFLDSLR-DLIADSNPMVVANAVAAL 184 (591)
T ss_dssp --HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHS-----SCC-----CHHH--HHHHHHHH-HTTSCSCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhh-----Chh-----hccc--ccHHHHHH-HHhCCCChhHHHHHHHHH
Confidence 35667778889999999999886555444321 111 1110 24566665 346677889999999999
Q ss_pred HHHHHhcCcc-cccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhh
Q 003081 276 MKLVKGAGIA-IRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTES 354 (850)
Q Consensus 276 ~~la~~~g~~-l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~ 354 (850)
++++...+.. ..+..+..++.|+..+.+..|.. +
T Consensus 185 ~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~---------------------q------------------------ 219 (591)
T 2vgl_B 185 SEISESHPNSNLLDLNPQNINKLLTALNECTEWG---------------------Q------------------------ 219 (591)
T ss_dssp HHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHH---------------------H------------------------
T ss_pred HHHHhhCCCccchhccHHHHHHHHHcCCCCCchH---------------------H------------------------
Confidence 9998765433 34455566666665554221110 0
Q ss_pred HhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhC--C
Q 003081 355 LDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYA--T 432 (850)
Q Consensus 355 l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~--~ 432 (850)
..+++.+.. +...-.+....+++.+...+ ++.|+.|+-+++.+++++.... .
T Consensus 220 -----~~il~~l~~--------------------l~~~~~~~~~~~l~~l~~~l-~~~~~~V~~ea~~~i~~l~~~~~~~ 273 (591)
T 2vgl_B 220 -----IFILDCLSN--------------------YNPKDDREAQSICERVTPRL-SHANSAVVLSAVKVLMKFLELLPKD 273 (591)
T ss_dssp -----HHHHHHHHT--------------------SCCCSHHHHHHHHHHHTTCS-CSSTTHHHHHHHHHHHHSCCSCCBT
T ss_pred -----HHHHHHHHH--------------------hCCCChHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHhhccCCC
Confidence 001111111 00000122356677777777 6889999999999999887533 2
Q ss_pred HHHHH----HHHHHHHHhhcCCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCC
Q 003081 433 PSQAQ----KLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSG 508 (850)
Q Consensus 433 ~~~v~----~li~~l~~~~~~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~ 508 (850)
++.+. ++.+.+..+...|++.|..+...+..+....++.|.++...|+ ...+++.++|....+++..++..
T Consensus 274 ~~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~-----~~~~d~~~Ir~~al~~L~~l~~~ 348 (591)
T 2vgl_B 274 SDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFF-----VKYNDPIYVKLEKLDIMIRLASQ 348 (591)
T ss_dssp TBSHHHHHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTS-----CCTTSCHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhhe-----eccCChHHHHHHHHHHHHHHCCh
Confidence 23333 3444444444467788999999999998888887776655432 23334478998888888887654
Q ss_pred ChhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Q 003081 509 DRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSIS 588 (850)
Q Consensus 509 ~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~ 588 (850)
. . .+.|++.+..++.+.++++|+.++.+++.++..++.. ....++.|.+-+.......+..++.++..++
T Consensus 349 ~--n----v~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~----~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii 418 (591)
T 2vgl_B 349 A--N----IAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQS----AERCVSTLLDLIQTKVNYVVQEAIVVIRDIF 418 (591)
T ss_dssp S--T----HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred h--h----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhH----HHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 2 2 3567777778888999999999999999999876433 3455566666665555556666677888887
Q ss_pred HhcccccccCCCCchHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHcCC
Q 003081 589 TSCHKDISAEDPTTPFAIVDMVSSACR-KKIKKYREAAFSCLEQVIKAFRD 638 (850)
Q Consensus 589 ~~~~~~l~~~~~~~~~~i~~~l~~e~~-r~~~~~R~~Al~~Lg~l~~~~~~ 638 (850)
....+ ....+++.+...+. ...+..|..+++++|++....++
T Consensus 419 ~~~p~--------~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~ 461 (591)
T 2vgl_B 419 RKYPN--------KYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN 461 (591)
T ss_dssp HHSCS--------SCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT
T ss_pred HHCcc--------hHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC
Confidence 65432 11233344444443 25688899999999998776643
No 22
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.55 E-value=7.8e-14 Score=145.69 Aligned_cols=200 Identities=11% Similarity=0.082 Sum_probs=159.7
Q ss_pred HHHHhccchhhhhhhhHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcC-CCCHhHHHHHHHHHHHhccCChHHHHHHHHH
Q 003081 79 FMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQY-DPDKNVQDAMAHIWKSLVADPKRTIDEHLDL 157 (850)
Q Consensus 79 fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~-Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~ 157 (850)
|....++ ..|..|++|+.+|..+++++++...+.+.++++.|...+. |+|+.||..++.+...|+......+..|...
T Consensus 20 l~~~l~s-~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ 98 (242)
T 2qk2_A 20 FYDKLEE-KKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASA 98 (242)
T ss_dssp HHHHHTC-SSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred HHhhhcc-CCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4444443 3699999999999999998655555667889999998885 9999999999999999996655567789999
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcc
Q 003081 158 IFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVT 237 (850)
Q Consensus 158 Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~ 237 (850)
+++.|+..++|+..+||++++.|+..++...+ +..+++.++..++|.++.||..+...+..+ + ....+.
T Consensus 99 ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~---l-~~~~~~ 167 (242)
T 2qk2_A 99 CVPSLLEKFKEKKPNVVTALREAIDAIYASTS-------LEAQQESIVESLSNKNPSVKSETALFIARA---L-TRTQPT 167 (242)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHH---H-TTCCGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHcCCChHHHHHHHHHHHHH---H-HHcCCC
Confidence 99999999999999999999999999987543 457778888889999999999876554443 1 111111
Q ss_pred cCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcc-cccchHHHHH
Q 003081 238 LTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIA-IRPHLSDLVS 295 (850)
Q Consensus 238 ~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~-l~P~lp~Lvp 295 (850)
.....+++.++|.|. ..+.++.++||..+..+++.+++..|.. +.||++.|=+
T Consensus 168 ----~~~~~~l~~l~p~l~-~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~ 221 (242)
T 2qk2_A 168 ----ALNKKLLKLLTTSLV-KTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDP 221 (242)
T ss_dssp ----GCCHHHHHHHHHHHH-HHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCH
T ss_pred ----CccHHHHHHHHHHHH-HHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCH
Confidence 123457889999988 4678889999999999999999999875 8888766533
No 23
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.54 E-value=4e-12 Score=150.47 Aligned_cols=468 Identities=12% Similarity=0.077 Sum_probs=285.7
Q ss_pred hHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHH
Q 003081 74 DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDE 153 (850)
Q Consensus 74 ~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~ 153 (850)
.+....+.+..++ ...-||.+..+++.+.+...+ .+.-+++.|.+-+.||||.||..+......+. .++
T Consensus 49 ~~~~~vi~l~~s~-~~~~Krl~yl~l~~~~~~~~e----~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~------~~~ 117 (591)
T 2vgl_B 49 SLFPDVVNCMQTD-NLELKKLVYLYLMNYAKSQPD----MAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR------VDK 117 (591)
T ss_dssp GGHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHSHH----HHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC------SGG
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHcccCch----HHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC------hHH
Confidence 4555555555444 467788888888887665333 23446788888889999999998877666554 123
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHh
Q 003081 154 HLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRL 233 (850)
Q Consensus 154 ~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~ 233 (850)
..+.+++.+.+.+.|+++.||..|+.|+..+.+..+ +.+.. ..+++.+..+++|.++.||.+|..++..+.. .
T Consensus 118 ~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p-~~~~~--~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~---~- 190 (591)
T 2vgl_B 118 ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINA-QMVED--QGFLDSLRDLIADSNPMVVANAVAALSEISE---S- 190 (591)
T ss_dssp GHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSC-CCHHH--HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTT---S-
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhCh-hhccc--ccHHHHHHHHhCCCChhHHHHHHHHHHHHHh---h-
Confidence 455678888999999999999999999999988432 33322 3577888888999999999988755544421 0
Q ss_pred hhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHH
Q 003081 234 CDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIE 313 (850)
Q Consensus 234 ~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~ 313 (850)
++....-......+..++..+- +.++-.+...+.++..++ +.-.+....+++.++..+.+..+.++
T Consensus 191 -~~~~~~~~l~~~~~~~Ll~~l~-----~~~~~~q~~il~~l~~l~----~~~~~~~~~~l~~l~~~l~~~~~~V~---- 256 (591)
T 2vgl_B 191 -HPNSNLLDLNPQNINKLLTALN-----ECTEWGQIFILDCLSNYN----PKDDREAQSICERVTPRLSHANSAVV---- 256 (591)
T ss_dssp -CCSCCSCCCHHHHHHHHHHHHH-----HCCHHHHHHHHHHHHTSC----CCSHHHHHHHHHHHTTCSCSSTTHHH----
T ss_pred -CCCccchhccHHHHHHHHHcCC-----CCCchHHHHHHHHHHHhC----CCChHHHHHHHHHHHHHHcCCChHHH----
Confidence 1000000011123334444332 223444555555544332 21123455677777776665433321
Q ss_pred HhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhh---c--Chhh----HhhHHHHHHHHHhccCCCchHhhHHHHHHH
Q 003081 314 LHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINV---V--DTES----LDQLVPHLARLVRSGIGLNTRVGVASFISL 384 (850)
Q Consensus 314 ~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~---l--d~~~----l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~ 384 (850)
.+|+..+... + +.+. .+.+.+.|...+. ...+.|..+++.+..
T Consensus 257 --------------------------~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~--~d~~vr~~aL~~l~~ 308 (591)
T 2vgl_B 257 --------------------------LSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS--GEPEVQYVALRNINL 308 (591)
T ss_dssp --------------------------HHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT--SCHHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHH
Confidence 1222222211 1 1122 2345555554443 245678899999999
Q ss_pred HHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhc-CCchhhHHHHHHHHH
Q 003081 385 LVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI-DDKNSQISCAILLKS 463 (850)
Q Consensus 385 L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~-~d~~~r~~~~~~l~a 463 (850)
++.+.+..+.++...+ +... +|+ ..||+.+...+..++ .++.+..+++.+.+... .|.+.|..++..++.
T Consensus 309 i~~~~p~~~~~~~~~~----~~~~-~d~-~~Ir~~al~~L~~l~---~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~ 379 (591)
T 2vgl_B 309 IVQKRPEILKQEIKVF----FVKY-NDP-IYVKLEKLDIMIRLA---SQANIAQVLAELKEYATEVDVDFVRKAVRAIGR 379 (591)
T ss_dssp HHHHCCSTTTTCTTTT----SCCT-TSC-HHHHHHHHHHHHHTC---CSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHhChHHHHHHHHhh----eecc-CCh-HHHHHHHHHHHHHHC---ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9998888887775543 2222 444 899998877776654 44556777777776554 466788888888888
Q ss_pred HHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhc-CCCHHHHHHHHHH
Q 003081 464 YSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIA-SSSWSSKRKSAKA 542 (850)
Q Consensus 464 l~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~-d~s~~vr~~aa~a 542 (850)
++...++.+..+.+.++.++ .+..++++........++....+. .+ +.++..+...+. ..+..+|..++-+
T Consensus 380 la~~~~~~~~~~v~~Ll~ll----~~~~~~v~~e~i~~l~~ii~~~p~-~~---~~~v~~L~~~l~~~~~~~~~~~~~wi 451 (591)
T 2vgl_B 380 CAIKVEQSAERCVSTLLDLI----QTKVNYVVQEAIVVIRDIFRKYPN-KY---ESIIATLCENLDSLDEPDARAAMIWI 451 (591)
T ss_dssp HHTTCHHHHHHHHHHHHHHH----HTCCHHHHHHHHHHHHHHHHHSCS-SC---CTTHHHHHHTTTTCCSHHHHHHHHHH
T ss_pred HHHhChhHHHHHHHHHHHHH----cccchHHHHHHHHHHHHHHHHCcc-hH---HHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 88766655555555554443 344555544333333333322111 11 223444555665 4567889988888
Q ss_pred HHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCch-HHHHHHHHHHHhh-cCHH
Q 003081 543 ICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTP-FAIVDMVSSACRK-KIKK 620 (850)
Q Consensus 543 lg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~-~~i~~~l~~e~~r-~~~~ 620 (850)
+|+.+....+ .+.++..+.+.+...+...|..++.|+..+..... +.. +.+...+.+...+ .+.+
T Consensus 452 lGey~~~~~~-----~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p--------~~~~~~i~~ll~~~~~d~~d~e 518 (591)
T 2vgl_B 452 VGEYAERIDN-----ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKP--------SETQELVQQVLSLATQDSDNPD 518 (591)
T ss_dssp HHTTCTTCTT-----HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCC--------STTHHHHHHHHHHHHTTCCCHH
T ss_pred HHcccccccC-----HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHHHhhhcCCChH
Confidence 8876554322 46777888888877778899999999999986443 222 3333344443344 6789
Q ss_pred HHHHHHHHHHH
Q 003081 621 YREAAFSCLEQ 631 (850)
Q Consensus 621 ~R~~Al~~Lg~ 631 (850)
+|..|...++-
T Consensus 519 vrdRA~~y~~l 529 (591)
T 2vgl_B 519 LRDRGYIYWRL 529 (591)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 99999866544
No 24
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.53 E-value=4.6e-10 Score=141.66 Aligned_cols=482 Identities=9% Similarity=0.058 Sum_probs=281.2
Q ss_pred HHHHhhh---cCCchHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhh----------------hhhchhhhhHHHHHHh
Q 003081 63 LCNLANE---MGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAG----------------DALKPHLRLLIPKLVR 123 (850)
Q Consensus 63 l~~lA~~---~g~p~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~----------------~~l~p~L~~lvp~L~r 123 (850)
|..+|.. -.||+++..++++.+.+. ..++++...|..+.+... +.+..+++++++.++.
T Consensus 124 ia~Ia~~~~p~~Wp~ll~~L~~~~~~~~--~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~ 201 (1049)
T 3m1i_C 124 LVQILKQEWPQNWPEFIPELIGSSSSSV--NVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQ 201 (1049)
T ss_dssp HHHHHHHHTTTTCTTHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccchHHHHHHHHHHccCh--HHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443 368999999999886432 456777778888887653 3355667777777776
Q ss_pred hcCC-CCHhHHHHHHHHHHHhccCChHHHHHHH-HHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchh---hhHHHH
Q 003081 124 FQYD-PDKNVQDAMAHIWKSLVADPKRTIDEHL-DLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQ---VGKHLR 198 (850)
Q Consensus 124 ~~~D-p~~~VR~a~~~iw~~Lv~d~~~~i~~~~-~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~---l~~~L~ 198 (850)
+..+ +++.++..+.++...++...+ +...+ +.+++.++..+.+ +..+|.+++.++.+++.....+. +..++.
T Consensus 202 ~l~~~~~~~~~~~aL~~l~~~l~wi~--~~~~~~~~ll~~l~~~~l~-~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~ 278 (1049)
T 3m1i_C 202 VLEQGSSSSLIVATLESLLRYLHWIP--YRYIYETNILELLSTKFMT-SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTV 278 (1049)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHTHHHH-SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhhCC--HHHHhhhhHHHHHHHHhCC-CHhHHHHHHHHHHHHHhCCCCcchhhHHHHHH
Confidence 6654 467899988888877664322 11111 3455555533222 57899999999999997532221 333443
Q ss_pred HHHHHHHHHh------------------ccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccC
Q 003081 199 RIWTAAFRAM------------------DDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGI 260 (850)
Q Consensus 199 ~i~~~l~~~l------------------dD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL 260 (850)
.+++..+..+ +|....+++...++...++......++.. ....+.+..++++++.- .
T Consensus 279 ~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~l~~~l~~ll~~-~ 353 (1049)
T 3m1i_C 279 LFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESD----ESLRELLLNAHQYLIQL-S 353 (1049)
T ss_dssp HHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSC----GGGHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCC----hhhHHHHHHHHHHHHHH-H
Confidence 4433332211 23344444444444444443333333321 11234667788888842 2
Q ss_pred CCchhHHHHHHHHHHHHHHHh------cCcccccchHHHHHHHHHhccccchhhhhHHHHhhhhcc-------cchhhhH
Q 003081 261 LSKVDSISKASIGVVMKLVKG------AGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAG-------IQTEKLE 327 (850)
Q Consensus 261 ~s~~~evr~~a~~~L~~la~~------~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~-------~~~d~id 327 (850)
..+..++...++..|..+++. ....++|++++|++.++..+.-.+ +. . +..++.+ .+.|.+
T Consensus 354 ~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~e-d~-~---~~~dd~~e~~r~~~~d~d~~- 427 (1049)
T 3m1i_C 354 KIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPE-EV-L---VVENDEGEIVREFVKESDTI- 427 (1049)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCT-TC-C---EEECTTSCEEECSSCCHHHH-
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCc-ce-e---eeeCCCCcchHhhhccchHH-
Confidence 234678999999999999882 235678999999999999885321 11 1 1111101 011111
Q ss_pred HHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhc-cCCCchHhhHHHHHHHHHHHhcccc-cchHHHHHHHHH
Q 003081 328 NLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRS-GIGLNTRVGVASFISLLVQKIGMDI-KPYTSMLLRLLF 405 (850)
Q Consensus 328 ~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~-~~~~~tr~~a~~~l~~L~~~~~~~~-~py~~~lL~~Ll 405 (850)
..|.. +.+++..+......+.++.+.+.+.+.+.. ...|..+.+++..++.++..+.... .++.+.+++.+.
T Consensus 428 ~~~~~------~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~ 501 (1049)
T 3m1i_C 428 QLYKS------EREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLL 501 (1049)
T ss_dssp HHHHH------HHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHH------HHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHH
Confidence 22211 234455554333344566677777766653 2356778888888887764443322 245677777666
Q ss_pred Hhhh----hcCcHHHHHHHHHHHHHHhhhC--CHHHHHHHHHHHHHhhcC-CchhhHHHHHHHHHHHhhchhhhh-----
Q 003081 406 PVVK----EEKSAAAKRAFASACASVLKYA--TPSQAQKLIEETAALHID-DKNSQISCAILLKSYSSVASDVLS----- 473 (850)
Q Consensus 406 ~~l~----~D~n~~Vr~~~a~alg~L~~~~--~~~~v~~li~~l~~~~~~-d~~~r~~~~~~l~al~~~~~~~f~----- 473 (850)
.... +|+.+.|+..++.++|+..+.. .++.+..+++.+.+.+.+ ++..+..|+.++..++..++..+.
T Consensus 502 ~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~ 581 (1049)
T 3m1i_C 502 DLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPR 581 (1049)
T ss_dssp HHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTT
T ss_pred HHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 5331 1345667667778888765532 234566667766665543 456788999999999988887774
Q ss_pred ---hhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCCh--hhHHhhHHHHHHHHHHhhc--------CC----CHH-H
Q 003081 474 ---GYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDR--VTLQLYLGEIVSLICEGIA--------SS----SWS-S 535 (850)
Q Consensus 474 ---~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~--~~i~~yl~eIl~ll~~~L~--------d~----s~~-v 535 (850)
+|.+.++..+.......+.+-...+.+....++...+ ....+|+..+++.+...+. ++ +.+ +
T Consensus 582 ~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 661 (1049)
T 3m1i_C 582 ESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETV 661 (1049)
T ss_dssp CSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHH
Confidence 8888888766554444333222333333333333222 3456777777766544332 11 121 2
Q ss_pred HH--HHHHHHHHHHHHhCcchhhhHHHHHHHHH
Q 003081 536 KR--KSAKAICKLGEILGESLSNYHHVLLESIM 566 (850)
Q Consensus 536 r~--~aa~alg~la~~~g~~l~~~l~~llp~L~ 566 (850)
+. ....++..++..+|..|.|+++.+++-+.
T Consensus 662 ~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l 694 (1049)
T 3m1i_C 662 KIIANIIKTNVAVCTSMGADFYPQLGHIYYNML 694 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 22 23457788889999999888776665443
No 25
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.52 E-value=2.5e-10 Score=142.75 Aligned_cols=455 Identities=9% Similarity=0.023 Sum_probs=273.4
Q ss_pred hhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCCh------H-------HHHHHHHHHHH---HHHHhhCCCC---hhHH
Q 003081 114 LRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPK------R-------TIDEHLDLIFD---DLLIQSGSRL---WRSR 174 (850)
Q Consensus 114 L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~------~-------~i~~~~~~Il~---~Ll~~l~~~~---wRVR 174 (850)
-+.++|.|+.....+++..+..+..+...++++.. . .+..+++.+++ .+...+.+.. ..+|
T Consensus 121 Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~ 200 (960)
T 1wa5_C 121 WPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLN 200 (960)
T ss_dssp CTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHH
T ss_pred hhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 47899999999998888888888888887775321 1 13334443333 2222344432 2344
Q ss_pred H------HHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhcc-----------Cc----HHHHHHHHHHHHHHHHHHHHh
Q 003081 175 E------ASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDD-----------IK----ETVRTAGDKLCRSVTSLTIRL 233 (850)
Q Consensus 175 e------aa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD-----------~k----~~VR~aA~~~~~~L~~~~~r~ 233 (850)
. .++.++..+....-++.+..++...++.+++++.. .. ..||+.+.. .+....-+.
T Consensus 201 ~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~---~l~~l~~~~ 277 (960)
T 1wa5_C 201 ILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQE---LVQLYTTRY 277 (960)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHH---HHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHH---HHHHHHHHH
Confidence 3 35666666554333445566677777766666632 11 235554433 332222111
Q ss_pred hhcccCcchhHHhHHHHhHHHHhh----ccCCCchhHHHHHHHHHHHHHHHhc--Ccccc--cchHHHH-HHHHHhcccc
Q 003081 234 CDVTLTEISDARQSMDIVLPFLLA----EGILSKVDSISKASIGVVMKLVKGA--GIAIR--PHLSDLV-SCMLESLSSL 304 (850)
Q Consensus 234 ~~~~~~~~~~~~~~l~~lLP~Ll~----~gL~s~~~evr~~a~~~L~~la~~~--g~~l~--P~lp~Lv-p~LL~~Ls~~ 304 (850)
. ....+++..++++++. .+-....++++..++..|..+++.. ...++ ||+++|+ +.++..+.-.
T Consensus 278 ~-------~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~ 350 (960)
T 1wa5_C 278 E-------DVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLR 350 (960)
T ss_dssp H-------HHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCC
T ss_pred H-------HHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCC
Confidence 1 1123455555555542 1212345688999999999988643 35566 8999999 6777766411
Q ss_pred chh-------hhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhc-----cCCC
Q 003081 305 EDQ-------GLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRS-----GIGL 372 (850)
Q Consensus 305 ep~-------~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~-----~~~~ 372 (850)
+.+ ...|+....+ .++.+..|..+ .+.+..+........++.+++.+.+.+.. ...|
T Consensus 351 ~~d~e~w~~dp~e~i~~d~e-----~~d~~s~R~aa------~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w 419 (960)
T 1wa5_C 351 EEDVELFEDDPIEYIRRDLE-----GSDTDTRRRAC------TDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNW 419 (960)
T ss_dssp GGGTTTTTTCHHHHHHHHHH-----C----CHHHHH------HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CH
T ss_pred HHHHHHHhcCHHHHHHhccC-----cccccCcHHHH------HHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhH
Confidence 111 1123221111 12223445432 24455555555556677778887777762 2357
Q ss_pred chHhhHHHHHHHHHHHh---cccccc-----hHHHH-HHHHHHhhhhcC---cHHHHHHHHHHHHHHhhhCCHHHHHHHH
Q 003081 373 NTRVGVASFISLLVQKI---GMDIKP-----YTSML-LRLLFPVVKEEK---SAAAKRAFASACASVLKYATPSQAQKLI 440 (850)
Q Consensus 373 ~tr~~a~~~l~~L~~~~---~~~~~p-----y~~~l-L~~Ll~~l~~D~---n~~Vr~~~a~alg~L~~~~~~~~v~~li 440 (850)
..|.+|...++.++... .....+ ....+ .+.+++.+ .|. ++-||..++.++|+.....+++....++
T Consensus 420 ~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l-~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l 498 (960)
T 1wa5_C 420 KFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDL-TSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELM 498 (960)
T ss_dssp HHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHH-HCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHh-cCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHH
Confidence 78889999998886432 111221 33343 44567777 566 8999999999999998877777777777
Q ss_pred HHHHHhhcC-CchhhHHHHHHHHHHHhh-----------chhhhhhhHhhHhHHHHHHhcCC---chH--HHHHHHHHHH
Q 003081 441 EETAALHID-DKNSQISCAILLKSYSSV-----------ASDVLSGYHAVIVPVIFISRFED---DKY--VSDLFEELWE 503 (850)
Q Consensus 441 ~~l~~~~~~-d~~~r~~~~~~l~al~~~-----------~~~~f~~~~~~vlP~l~~~~~d~---~~~--v~~~~~~v~~ 503 (850)
+.+...+.+ +...|..|+.++..++.. ..+.+.+|++.+++.++...... .+. ..+...++..
T Consensus 499 ~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~ 578 (960)
T 1wa5_C 499 PILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIF 578 (960)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHH
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHH
Confidence 777776643 344688888888888764 24567899999998877654432 000 1122223333
Q ss_pred HhcCCChhhHHhhHHHHHHHHHHhh----cC-CCHHHHHHHHHHHHHHHHHhC-cchhhhHHHHHHHHHHhcCCCChhhH
Q 003081 504 ENTSGDRVTLQLYLGEIVSLICEGI----AS-SSWSSKRKSAKAICKLGEILG-ESLSNYHHVLLESIMKEVPGRLWEGK 577 (850)
Q Consensus 504 ~l~~~~~~~i~~yl~eIl~ll~~~L----~d-~s~~vr~~aa~alg~la~~~g-~~l~~~l~~llp~L~~~L~~r~~~gK 577 (850)
.++...+..+.+|.+.+++.+...+ .+ .+...+.....+++.++...+ +.+.++.+.++|.+...+.....+-.
T Consensus 579 ~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~ 658 (960)
T 1wa5_C 579 RVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFI 658 (960)
T ss_dssp HHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhH
Confidence 3333223456788888877666554 23 356788888899999998744 35666788999999988855445567
Q ss_pred HHHHHHHHHHHHh
Q 003081 578 DALLYAIGSISTS 590 (850)
Q Consensus 578 e~vL~aL~~l~~~ 590 (850)
+.+++.+..+...
T Consensus 659 ~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 659 PYVFQIIAFVVEQ 671 (960)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7788888777654
No 26
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.51 E-value=1.8e-12 Score=151.21 Aligned_cols=394 Identities=11% Similarity=0.042 Sum_probs=244.8
Q ss_pred hHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhh-hhhchhh-hhHHHHHHhhcCCC-CHhHHHHHHHHHHHhccCChHH
Q 003081 74 DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAG-DALKPHL-RLLIPKLVRFQYDP-DKNVQDAMAHIWKSLVADPKRT 150 (850)
Q Consensus 74 ~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~-~~l~p~L-~~lvp~L~r~~~Dp-~~~VR~a~~~iw~~Lv~d~~~~ 150 (850)
..+..++....+. .+..+..|+..|..+++... ......+ ..++|.|..++.++ ++.||..+..+...+..+.+..
T Consensus 87 ~~i~~lv~~L~s~-~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 87 QELPQMTQQLNSD-DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp CCHHHHHHHHSCS-SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 4477777777665 47888899999988875421 1111111 36899999999998 9999999999888888754332
Q ss_pred HHHHH-HHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHH--HHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Q 003081 151 IDEHL-DLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHL--RRIWTAAFRAMDDIKETVRTAGDKLCRSVT 227 (850)
Q Consensus 151 i~~~~-~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L--~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~ 227 (850)
....+ ..+++.|+..+.++++.+|+.|+.+|+++....+ .....+ ..+++.++.++.+....||..|..++..+.
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~--~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 243 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST--DYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC 243 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCH--HHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCc--cchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 22222 3467788888888899999999999999986532 111211 246778888888888899988754444332
Q ss_pred HHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchH-HHHHHHHHhccccch
Q 003081 228 SLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLS-DLVSCMLESLSSLED 306 (850)
Q Consensus 228 ~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp-~Lvp~LL~~Ls~~ep 306 (850)
. ..++. ........++|.|+. -+.+++++++..++.+|..++......+...+. .+
T Consensus 244 ~----~~~~~-----~~~~~~~~~l~~L~~-lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~------------- 300 (530)
T 1wa5_B 244 R----GKKPQ-----PDWSVVSQALPTLAK-LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRI------------- 300 (530)
T ss_dssp C----CSSSC-----CCHHHHGGGHHHHHH-HTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTC-------------
T ss_pred C----CCCCC-----CcHHHHHhHHHHHHH-HHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCc-------------
Confidence 1 00011 112344567777773 355667899999999999997432211111110 22
Q ss_pred hhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHH
Q 003081 307 QGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLV 386 (850)
Q Consensus 307 ~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~ 386 (850)
+|.|.+.+++. ....+..++.++..++
T Consensus 301 ----------------------------------------------------v~~Lv~lL~~~-~~~v~~~a~~~L~~l~ 327 (530)
T 1wa5_B 301 ----------------------------------------------------PKRLVELLSHE-STLVQTPALRAVGNIV 327 (530)
T ss_dssp ----------------------------------------------------HHHHHHGGGCS-CHHHHHHHHHHHHHHT
T ss_pred ----------------------------------------------------HHHHHHHHCCC-ChhhHHHHHHHHHHHH
Confidence 33333333322 2233444555554443
Q ss_pred HHhcccccchH-HHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHHH-----HHHHHHHHhhc-CCchhhHHHHH
Q 003081 387 QKIGMDIKPYT-SMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQ-----KLIEETAALHI-DDKNSQISCAI 459 (850)
Q Consensus 387 ~~~~~~~~py~-~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~-----~li~~l~~~~~-~d~~~r~~~~~ 459 (850)
...+....... ..+++.++..+ .+.+..||+.++.+++.+....+ +.+. .+++.+...+. .++..|..++.
T Consensus 328 ~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~vr~~A~~aL~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~ 405 (530)
T 1wa5_B 328 TGNDLQTQVVINAGVLPALRLLL-SSPKENIKKEACWTISNITAGNT-EQIQAVIDANLIPPLVKLLEVAEYKTKKEACW 405 (530)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHcchHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 22111111111 24677788888 67889999999999999987543 3222 34556666654 46677888888
Q ss_pred HHHHHHhhch---hhhhhh-HhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChh-------hHHhhHHHH-----HHH
Q 003081 460 LLKSYSSVAS---DVLSGY-HAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRV-------TLQLYLGEI-----VSL 523 (850)
Q Consensus 460 ~l~al~~~~~---~~f~~~-~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~-------~i~~yl~eI-----l~l 523 (850)
++..++.... +..... ...++|.+.....+.++.++......+..+...... .+.+|...+ ++.
T Consensus 406 aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 485 (530)
T 1wa5_B 406 AISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEK 485 (530)
T ss_dssp HHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHH
Confidence 8888876543 232221 234677776666667788887766665554432211 112344433 667
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHH
Q 003081 524 ICEGIASSSWSSKRKSAKAICKLGE 548 (850)
Q Consensus 524 l~~~L~d~s~~vr~~aa~alg~la~ 548 (850)
+...+.+++..++..|..+|..+..
T Consensus 486 L~~L~~~~~~~v~~~a~~il~~~~~ 510 (530)
T 1wa5_B 486 IFNCQQNENDKIYEKAYKIIETYFG 510 (530)
T ss_dssp HHGGGGCSCHHHHHHHHHHHHHHSS
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 7778889999999988877776553
No 27
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.50 E-value=1.1e-11 Score=144.39 Aligned_cols=402 Identities=9% Similarity=0.008 Sum_probs=256.5
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhH-HHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHhh
Q 003081 157 LIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGK-HLRRIWTAAFRAMDDIK-ETVRTAGDKLCRSVTSLTIRLC 234 (850)
Q Consensus 157 ~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~-~L~~i~~~l~~~ldD~k-~~VR~aA~~~~~~L~~~~~r~~ 234 (850)
.-++.++..+.+.++.+|..|+.++..++.+...+.... .-..+++.+..++.+.. +.||..|..++..++..
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~----- 148 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASG----- 148 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS-----
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC-----
Confidence 347788888888899999999999999988654121111 12257788888888776 89998875444444321
Q ss_pred hcccCcchhHHhHHH-HhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHH
Q 003081 235 DVTLTEISDARQSMD-IVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIE 313 (850)
Q Consensus 235 ~~~~~~~~~~~~~l~-~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~ 313 (850)
++.....++. ..+|.|+. -+.++++++|..++.+|++|+..... .+..+-.
T Consensus 149 -----~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~aL~~l~~~~~~-~~~~i~~--------------------- 200 (528)
T 4b8j_A 149 -----TSENTKVVIDHGAVPIFVK-LLGSSSDDVREQAVWALGNVAGDSPK-CRDLVLA--------------------- 200 (528)
T ss_dssp -----CHHHHHHHHHTTHHHHHHH-HTTCSCHHHHHHHHHHHHHHHHTCHH-HHHHHHH---------------------
T ss_pred -----CHHHHHHHHhCCcHHHHHH-HhcCCCHHHHHHHHHHHHHHhCCChh-hHHHHHH---------------------
Confidence 0011111222 46777763 35567889999999999999742111 0000000
Q ss_pred HhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccc
Q 003081 314 LHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDI 393 (850)
Q Consensus 314 ~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~ 393 (850)
...+|.|+..++.......+..++.+|..|+...+..-
T Consensus 201 ------------------------------------------~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~ 238 (528)
T 4b8j_A 201 ------------------------------------------NGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPS 238 (528)
T ss_dssp ------------------------------------------TTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCC
T ss_pred ------------------------------------------CCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCc
Confidence 01233344444222233445566666666654432222
Q ss_pred cchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHHH-----HHHHHHHHhhc-CCchhhHHHHHHHHHHHhh
Q 003081 394 KPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQ-----KLIEETAALHI-DDKNSQISCAILLKSYSSV 467 (850)
Q Consensus 394 ~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~-----~li~~l~~~~~-~d~~~r~~~~~~l~al~~~ 467 (850)
.......++.++..+ .+.++.|+..++.+++++....+. ... ..++.+...+. .++..+..++.+++.++..
T Consensus 239 ~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~~-~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~ 316 (528)
T 4b8j_A 239 FEQTRPALPALARLI-HSNDEEVLTDACWALSYLSDGTND-KIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTG 316 (528)
T ss_dssp HHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHTSSCHH-HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCHH-HHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcC
Confidence 234456788888888 678899999999999999865432 222 34667777765 4556788888888888765
Q ss_pred chhhhhhhH-hhHhHHHHHHhcCC-chHHHHHHHHHHHHhcCCChhhHHhhH-HHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 003081 468 ASDVLSGYH-AVIVPVIFISRFED-DKYVSDLFEELWEENTSGDRVTLQLYL-GEIVSLICEGIASSSWSSKRKSAKAIC 544 (850)
Q Consensus 468 ~~~~f~~~~-~~vlP~l~~~~~d~-~~~v~~~~~~v~~~l~~~~~~~i~~yl-~eIl~ll~~~L~d~s~~vr~~aa~alg 544 (850)
.++...... ..++|.+.....+. ++.++..+..++..++.+....+.... ..+++.+...+.+.++.+|..|+.+|+
T Consensus 317 ~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~ 396 (528)
T 4b8j_A 317 DDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAIS 396 (528)
T ss_dssp CHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 554433333 34677776666665 788888877777777765544333222 356778888888889999999999999
Q ss_pred HHHHHhCcchhhhH--HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccc---cCCCCchHHH-----HHHHHHHH
Q 003081 545 KLGEILGESLSNYH--HVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDIS---AEDPTTPFAI-----VDMVSSAC 614 (850)
Q Consensus 545 ~la~~~g~~l~~~l--~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~---~~~~~~~~~i-----~~~l~~e~ 614 (850)
.++.........++ ..+++.|.+.+...++..+..++.+|..++......-. ....++...+ +..+..-.
T Consensus 397 nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~ 476 (528)
T 4b8j_A 397 NATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQ 476 (528)
T ss_dssp HHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGG
T ss_pred HHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHH
Confidence 99987444444443 45788899999888899999999999999875432100 0112233333 33444545
Q ss_pred hhcCHHHHHHHHHHHHHHHHH
Q 003081 615 RKKIKKYREAAFSCLEQVIKA 635 (850)
Q Consensus 615 ~r~~~~~R~~Al~~Lg~l~~~ 635 (850)
...++.++..|...+..+...
T Consensus 477 ~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 477 SHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp GCSSHHHHHHHHHHHHHHCC-
T ss_pred cCCCHHHHHHHHHHHHHHCCC
Confidence 567888899988888776543
No 28
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.50 E-value=1.6e-10 Score=145.88 Aligned_cols=436 Identities=11% Similarity=0.133 Sum_probs=262.9
Q ss_pred hchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhcc----CC--hHHHHHHHH---------------------------
Q 003081 110 LKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVA----DP--KRTIDEHLD--------------------------- 156 (850)
Q Consensus 110 l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~----d~--~~~i~~~~~--------------------------- 156 (850)
+.+++..+++.+++..++++..|+..+...|..++. .+ ......++.
T Consensus 338 ~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~ 417 (1049)
T 3m1i_C 338 LRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIV 417 (1049)
T ss_dssp GHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEE
T ss_pred hHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcch
Confidence 466788889999988888898999999888988764 11 111111221
Q ss_pred ---------------------------------HHHHHHHHhhC--CCChhHHHHHHHHHHHHHccCCchhhhHHHHHHH
Q 003081 157 ---------------------------------LIFDDLLIQSG--SRLWRSREASCLSLADIIQGRKFDQVGKHLRRIW 201 (850)
Q Consensus 157 ---------------------------------~Il~~Ll~~l~--~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~ 201 (850)
.+++.+-+.+. +.+||.|++++.|++.+.++...+.-.+++++++
T Consensus 418 r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~ 497 (1049)
T 3m1i_C 418 REFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVI 497 (1049)
T ss_dssp ECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHH
Confidence 12222222232 3689999999999999987665443345688998
Q ss_pred HHHHHHhc-----cCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHH
Q 003081 202 TAAFRAMD-----DIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVM 276 (850)
Q Consensus 202 ~~l~~~ld-----D~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~ 276 (850)
+.+....+ |.++.||..+..++...++|+ .. ..+++..+++.|+ .++.++++.|+..|+.++.
T Consensus 498 ~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~----~~-------~~~~l~~vl~~ll-~~l~~~~~~V~~~A~~al~ 565 (1049)
T 3m1i_C 498 KDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFL----KA-------HWNFLRTVILKLF-EFMHETHEGVQDMACDTFI 565 (1049)
T ss_dssp HHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHH----HH-------CHHHHHHHHHHHH-HHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHHHHHHHH----Hh-------HHHHHHHHHHHHH-HHhcCCCHHHHHHHHHHHH
Confidence 88877543 456666654433333333333 11 1247888889888 4787778999999999999
Q ss_pred HHHHhcCcccc--------cchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHh
Q 003081 277 KLVKGAGIAIR--------PHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCIN 348 (850)
Q Consensus 277 ~la~~~g~~l~--------P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~ 348 (850)
++++.++..+. ||+++|+..+...+...+++...+ +++++..++.
T Consensus 566 ~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~---------------------------~~eai~~ii~ 618 (1049)
T 3m1i_C 566 KIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHT---------------------------FYKACGIIIS 618 (1049)
T ss_dssp HHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHH---------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHH---------------------------HHHHHHHHHH
Confidence 99999887764 999999999998887654332111 2344444443
Q ss_pred hcCh-h----hHhhHHHHHHHH----Hhcc---CC---Cch--H--hhHHHHHHHHHHHhcccccchHHHHHHHHHHhhh
Q 003081 349 VVDT-E----SLDQLVPHLARL----VRSG---IG---LNT--R--VGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVK 409 (850)
Q Consensus 349 ~ld~-~----~l~~lvp~L~~~----lk~~---~~---~~t--r--~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~ 409 (850)
..+. + .+..+++.+.+. +... .. .+. + ...++.+..++...|..|.|+++.++..++..+
T Consensus 619 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~~~- 697 (1049)
T 3m1i_C 619 EERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLY- 697 (1049)
T ss_dssp TCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHH-
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-
Confidence 3331 1 123333333222 2110 00 111 1 123445566677888888888887776665433
Q ss_pred hcCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcC
Q 003081 410 EEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFE 489 (850)
Q Consensus 410 ~D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d 489 (850)
... ...-.....+.|.. . ...-+..+...+.|.+....
T Consensus 698 ~~~-~~~~~~~~~~~g~~-------------------------------------~--~~~p~~~~~~~~~~~l~~ll-- 735 (1049)
T 3m1i_C 698 RAV-SSMISAQVAAEGLI-------------------------------------A--TKTPKVRGLRTIKKEILKLV-- 735 (1049)
T ss_dssp HHH-HHHHHHHHHHHCGG-------------------------------------G--GGSHHHHHHHHHHHHHHHHH--
T ss_pred HHH-HHHHHHHHHccCch-------------------------------------h--hhhHHHHHHHHHHHHHHHHH--
Confidence 110 00000000000000 0 01112223333444332110
Q ss_pred CchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCCCHHHH-HHHHHHHHHHHHHhCcchhhhHHHHHHHHHHh
Q 003081 490 DDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSK-RKSAKAICKLGEILGESLSNYHHVLLESIMKE 568 (850)
Q Consensus 490 ~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~~vr-~~aa~alg~la~~~g~~l~~~l~~llp~L~~~ 568 (850)
+.|..-....+....+|++.+++.+......+....| ..+..+++.++..+|+.+.++++.+++.+.++
T Consensus 736 ----------~~~~~~~~~l~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~ 805 (1049)
T 3m1i_C 736 ----------ETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFEC 805 (1049)
T ss_dssp ----------HHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHH
T ss_pred ----------HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 1111111111223456777776666554322211111 45678899999999999999999999988877
Q ss_pred c-----C--CCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcC
Q 003081 569 V-----P--GRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFR 637 (850)
Q Consensus 569 L-----~--~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~ 637 (850)
. . ...++.++..+.-++.++.+|...+-...+.....++..++|.++.....+.+.++..+-.++....
T Consensus 806 ~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~ 881 (1049)
T 3m1i_C 806 TLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIE 881 (1049)
T ss_dssp HHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Confidence 4 2 2347899999999999999887665321222356788899999999999999999999999888653
No 29
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.50 E-value=1.6e-11 Score=143.03 Aligned_cols=394 Identities=12% Similarity=0.047 Sum_probs=249.3
Q ss_pred hHHHHHHhhcCCCCHhHHHHHHHHHHHhccCCh-HHHHHHH-HHHHHHHHHhhCCCC-hhHHHHHHHHHHHHHccCCchh
Q 003081 116 LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPK-RTIDEHL-DLIFDDLLIQSGSRL-WRSREASCLSLADIIQGRKFDQ 192 (850)
Q Consensus 116 ~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~-~~i~~~~-~~Il~~Ll~~l~~~~-wRVReaa~~Al~~Ll~~~~~~~ 192 (850)
.-+|.|...+.++++.+|..+...+..+..... ..+.... ..+++.|+..+.+++ +.+|..|+.+|+++..+.+ .
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~--~ 151 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTS--E 151 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCH--H
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH--H
Confidence 347777777789999999998887777754321 2233322 357888888888876 9999999999999988643 2
Q ss_pred hhHHHH--HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHH-HhHHHHhhccC-CCchhHHH
Q 003081 193 VGKHLR--RIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMD-IVLPFLLAEGI-LSKVDSIS 268 (850)
Q Consensus 193 l~~~L~--~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~-~lLP~Ll~~gL-~s~~~evr 268 (850)
....+. ..++.++.++.+..+.||..|..++..++.. .+ .....++. .++|.|+. -+ .+..+.++
T Consensus 152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~-----~~-----~~~~~i~~~g~l~~Ll~-lL~~~~~~~v~ 220 (528)
T 4b8j_A 152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGD-----SP-----KCRDLVLANGALLPLLA-QLNEHTKLSML 220 (528)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHT-----CH-----HHHHHHHHTTCHHHHHH-TCCTTCCHHHH
T ss_pred HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-----Ch-----hhHHHHHHCCcHHHHHH-HHhcCCCHHHH
Confidence 222222 4788889999999999999886555544321 00 00111222 36777763 34 34678999
Q ss_pred HHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHh
Q 003081 269 KASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCIN 348 (850)
Q Consensus 269 ~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~ 348 (850)
..++.+|.+++......-......++|.|+..+.+.++.+.....+....... .++ +.+..++
T Consensus 221 ~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~--------------~~~--~~~~~~~- 283 (528)
T 4b8j_A 221 RNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSD--------------GTN--DKIQAVI- 283 (528)
T ss_dssp HHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTS--------------SCH--HHHHHHH-
T ss_pred HHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHc--------------CCH--HHHHHHH-
Confidence 99999999999865433344567889999999987665544322222211100 000 0000011
Q ss_pred hcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchH-HHHHHHHHHhhhhcC-cHHHHHHHHHHHHH
Q 003081 349 VVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYT-SMLLRLLFPVVKEEK-SAAAKRAFASACAS 426 (850)
Q Consensus 349 ~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~-~~lL~~Ll~~l~~D~-n~~Vr~~~a~alg~ 426 (850)
-..++|.|.+.+++. ....+..|+.+|..++........... ..+++.++..+ .+. ++.|++.++.+++.
T Consensus 284 ------~~g~v~~Lv~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~~v~~~A~~~L~n 355 (528)
T 4b8j_A 284 ------EAGVCPRLVELLLHP-SPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLL-TQNLKKSIKKEACWTISN 355 (528)
T ss_dssp ------HTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHH-HSCCCHHHHHHHHHHHHH
T ss_pred ------HcCHHHHHHHHHcCC-ChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHH-cCCCcHHHHHHHHHHHHH
Confidence 124678888888765 455677888888888653322222222 24678888888 566 89999999999999
Q ss_pred HhhhCCHHHHH-----HHHHHHHHhhc-CCchhhHHHHHHHHHHHhhchhhhhhhH--hhHhHHHHHHhcCCchHHHHHH
Q 003081 427 VLKYATPSQAQ-----KLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYH--AVIVPVIFISRFEDDKYVSDLF 498 (850)
Q Consensus 427 L~~~~~~~~v~-----~li~~l~~~~~-~d~~~r~~~~~~l~al~~~~~~~f~~~~--~~vlP~l~~~~~d~~~~v~~~~ 498 (850)
+.... ++.+. .+++.+...+. .|+..|..++.++..++....+....++ ..++|.+.....+.++.++..+
T Consensus 356 l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~a 434 (528)
T 4b8j_A 356 ITAGN-KDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVC 434 (528)
T ss_dssp HHTSC-HHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred HHCCC-HHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence 98743 33332 34566666664 5667788888888888876323332332 3466766666666777887776
Q ss_pred HHHHHHhcCCChh-------hHHhhHHH-----HHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 003081 499 EELWEENTSGDRV-------TLQLYLGE-----IVSLICEGIASSSWSSKRKSAKAICKLGE 548 (850)
Q Consensus 499 ~~v~~~l~~~~~~-------~i~~yl~e-----Il~ll~~~L~d~s~~vr~~aa~alg~la~ 548 (850)
.+.+..+...... ...+|... .++.+.....+++.+++..|...+..+..
T Consensus 435 l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 496 (528)
T 4b8j_A 435 LEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWM 496 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 6666555432111 01123332 24567777788999999999888887654
No 30
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1e-13 Score=145.61 Aligned_cols=206 Identities=14% Similarity=0.104 Sum_probs=161.5
Q ss_pred HHHHhccchhhhhhhhHHhhHHH-HHHHhhhhh--chhhhhHHHHHHhhc-CCCCHhHHHHHHHHHHHhccCCh-HHHH-
Q 003081 79 FMDLANYQVSLNSKRGAAFGFSK-IAKQAGDAL--KPHLRLLIPKLVRFQ-YDPDKNVQDAMAHIWKSLVADPK-RTID- 152 (850)
Q Consensus 79 fm~la~~~~~w~sr~gAa~gl~~-I~~~~~~~l--~p~L~~lvp~L~r~~-~Dp~~~VR~a~~~iw~~Lv~d~~-~~i~- 152 (850)
|.+...+. .|..|++|...++. +++++.+.. ......++..|.... .|+|+.||..++.+...++.+.+ ..+.
T Consensus 21 f~~~l~s~-~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERITSS-KWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHHTCS-SHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHhhcC-CHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 44444443 69999999999999 998775544 334457788888888 89999999999999999996654 4566
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHH
Q 003081 153 EHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIR 232 (850)
Q Consensus 153 ~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r 232 (850)
.|...+++.++..++|+...||+++..|+..+++..++....+|++.+++.++..+++.++.||.++...+..+..
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~---- 175 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK---- 175 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH----
Confidence 8999999999999999999999999999999998765433334589999999999999999999988655544432
Q ss_pred hhhcccCcchhHHhHH-HHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCc-ccccchHHH
Q 003081 233 LCDVTLTEISDARQSM-DIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGI-AIRPHLSDL 293 (850)
Q Consensus 233 ~~~~~~~~~~~~~~~l-~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~-~l~P~lp~L 293 (850)
.....+.....++ +.++|.|. +.+.++.++||..|..+++.+++..|. .+.||++.+
T Consensus 176 ---~~~~~~~~l~~~l~~~iip~l~-~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 176 ---EEKDGYSTLQRYLKDEVVPIVI-QIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp ---HCCSCSHHHHHHHTTTHHHHHH-HHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred ---HcCCcchhHHHHHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 1111112233578 88999887 568888999999999999999999886 488887653
No 31
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.43 E-value=3.1e-08 Score=123.39 Aligned_cols=640 Identities=10% Similarity=0.051 Sum_probs=356.4
Q ss_pred cCCchHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhh----------------hhhchhhhhHHHHHHhhcCC-CCHhH
Q 003081 70 MGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAG----------------DALKPHLRLLIPKLVRFQYD-PDKNV 132 (850)
Q Consensus 70 ~g~p~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~----------------~~l~p~L~~lvp~L~r~~~D-p~~~V 132 (850)
-.||+++..++++.+.+. ........-|..+.+... +.|...++++++.++.+..+ .++.+
T Consensus 134 ~~Wp~~l~dL~~~l~~~~--~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l 211 (1023)
T 4hat_C 134 QNWPEFIPELIGSSSSSV--NVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSL 211 (1023)
T ss_dssp TTCTTHHHHHHHHTTTCH--HHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHH
T ss_pred hhchHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 378999999999886553 334444444555555521 23344556677777666654 46778
Q ss_pred HHHHHHHHHHhccCChHHHHHHH-HHHHHHHH-HhhCCCChhHHHHHHHHHHHHHccCC-ch--hhhHHHHHHHHHHHHH
Q 003081 133 QDAMAHIWKSLVADPKRTIDEHL-DLIFDDLL-IQSGSRLWRSREASCLSLADIIQGRK-FD--QVGKHLRRIWTAAFRA 207 (850)
Q Consensus 133 R~a~~~iw~~Lv~d~~~~i~~~~-~~Il~~Ll-~~l~~~~wRVReaa~~Al~~Ll~~~~-~~--~l~~~L~~i~~~l~~~ 207 (850)
.....++.+..++-.+ +...+ ..+++.++ ..+.+ ...|.+||.+|.+++.... .+ .+.+.+..+++..+..
T Consensus 212 ~~~~L~~l~s~l~WI~--i~~i~~~~ll~~l~~~~L~~--~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~ 287 (1023)
T 4hat_C 212 IVATLESLLRYLHWIP--YRYIYETNILELLSTKFMTS--PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQ 287 (1023)
T ss_dssp HHHHHHHHHHHTTTSC--THHHHSSSHHHHHHTHHHHS--HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--HHHhcchhHHHHHHHHHcCC--HHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHH
Confidence 7888888887775422 11111 34666666 55543 5799999999999997332 22 3555555555554332
Q ss_pred h------------------ccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHH
Q 003081 208 M------------------DDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISK 269 (850)
Q Consensus 208 l------------------dD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~ 269 (850)
+ ++..+.+.+.-..+...++..-.+.++.. ....+++...+-.|+. .-..+..++-.
T Consensus 288 l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~----~~~~~~l~~~l~~Ll~-~~~~~d~ei~~ 362 (1023)
T 4hat_C 288 IATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESD----ESLRELLLNAHQYLIQ-LSKIEERELFK 362 (1023)
T ss_dssp HHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSC----GGGHHHHHHHHHHHHH-HTTSSCHHHHH
T ss_pred HHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCC----cchhHHHHHHHHHHHH-hhCCCcHHHHH
Confidence 2 11112222222222223333223333211 1123344444555653 11224678888
Q ss_pred HHHHHHHHHHHhc------CcccccchHHHHHHHHHhccccchhhhhHHHHhhhh----cccchhhhHHHHHhhccCCcH
Q 003081 270 ASIGVVMKLVKGA------GIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAAN----AGIQTEKLENLRISIAKGSPM 339 (850)
Q Consensus 270 ~a~~~L~~la~~~------g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~----~~~~~d~id~~r~~~~~~s~l 339 (850)
.+++.|..++... ...++|++..+++.++.-+.-.+ ++. ......+. +..+.|+++.-|. +
T Consensus 363 ~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~-e~~-ive~d~~~~~~e~~~d~d~~~~f~~-------~ 433 (1023)
T 4hat_C 363 TTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPE-EVL-VVENDEGEIVREFVKESDTIQLYKS-------E 433 (1023)
T ss_dssp HHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCT-TCC-EEECTTSCEEECSSCCGGGHHHHHH-------H
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCc-ccc-cCCCCCccHHHHhccchHHHHHHHH-------H
Confidence 9999999998753 24578999999999998886432 110 00000000 0001222222221 1
Q ss_pred HHHHHHHHhhcChhhHhhHHHHHHHHHhcc-CCCchHhhHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhh----cCc
Q 003081 340 WDTLDLCINVVDTESLDQLVPHLARLVRSG-IGLNTRVGVASFISLLVQKIGMD-IKPYTSMLLRLLFPVVKE----EKS 413 (850)
Q Consensus 340 ~eal~~~~~~ld~~~l~~lvp~L~~~lk~~-~~~~tr~~a~~~l~~L~~~~~~~-~~py~~~lL~~Ll~~l~~----D~n 413 (850)
-+++..+......+.++.+++.+.+.+... ..|+.+.+++-.++.++...... ..|++..+++.++..+.. |.+
T Consensus 434 Rd~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k 513 (1023)
T 4hat_C 434 REVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNK 513 (1023)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcch
Confidence 144443333333455667788877776542 35788888888888876554433 678899999988887721 456
Q ss_pred HHHHHHHHHHHHHHhhhC--CHHHHHHHHHHHHHhhcC-CchhhHHHHHHHHHHHhhchhhhh--------hhHhhHhHH
Q 003081 414 AAAKRAFASACASVLKYA--TPSQAQKLIEETAALHID-DKNSQISCAILLKSYSSVASDVLS--------GYHAVIVPV 482 (850)
Q Consensus 414 ~~Vr~~~a~alg~L~~~~--~~~~v~~li~~l~~~~~~-d~~~r~~~~~~l~al~~~~~~~f~--------~~~~~vlP~ 482 (850)
..||...+-.+|+..+.. .++.+..++..+.+...+ ++.....|+.++..|+..+...+. +|...++..
T Consensus 514 ~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~ 593 (1023)
T 4hat_C 514 AVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRD 593 (1023)
T ss_dssp HHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHH
Confidence 678888888888876643 344566667676666543 345678889999999988877773 577777766
Q ss_pred HHHHhcCCchHHHHHHHHHHHHhcCCCh--hhHHhhHHHHHHHHHHhhc--------CCC-H----HHHHH--HHHHHHH
Q 003081 483 IFISRFEDDKYVSDLFEELWEENTSGDR--VTLQLYLGEIVSLICEGIA--------SSS-W----SSKRK--SAKAICK 545 (850)
Q Consensus 483 l~~~~~d~~~~v~~~~~~v~~~l~~~~~--~~i~~yl~eIl~ll~~~L~--------d~s-~----~vr~~--aa~alg~ 545 (850)
+......-+...+..+-+....++...+ .....|++.+++.+...++ +++ | .++.- -.+++..
T Consensus 594 l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~ 673 (1023)
T 4hat_C 594 IQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVA 673 (1023)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHH
Confidence 5544433334333444455555555433 2234566666655444332 222 2 23332 2367788
Q ss_pred HHHHhCcchhhhHHHHHHHHHHhcC-------------CC----Ch------hhHHHHHHHHHHHHHhcccccccCCCCc
Q 003081 546 LGEILGESLSNYHHVLLESIMKEVP-------------GR----LW------EGKDALLYAIGSISTSCHKDISAEDPTT 602 (850)
Q Consensus 546 la~~~g~~l~~~l~~llp~L~~~L~-------------~r----~~------~gKe~vL~aL~~l~~~~~~~l~~~~~~~ 602 (850)
+|...|..+.|++..++|.+.+-.+ |. +. ..|..+++-+..++.++.+.-. -...+
T Consensus 674 v~~~lg~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~-~~~~~ 752 (1023)
T 4hat_C 674 VCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDD-VVKVL 752 (1023)
T ss_dssp HHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHH-HHHHT
T ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHh
Confidence 8999999999999888887764311 21 11 3356667767666665532100 01125
Q ss_pred hHHHHHHHHHHHhhcCHHHHH-HHHHHHHHHHHHcCCchhHHhHHHHHHhhccccc-ccCCCCCCCCCCCcccchhhhcc
Q 003081 603 PFAIVDMVSSACRKKIKKYRE-AAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGSTA-LNKSGQVPLPSDASKEESADESV 680 (850)
Q Consensus 603 ~~~i~~~l~~e~~r~~~~~R~-~Al~~Lg~l~~~~~~~~~~~iv~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 680 (850)
++.++..++..-.+..+..|. ..+.++..++..++. .+.+.+..++..+.+-.- |= .+|-.+ --++|
T Consensus 753 ~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~-~~~~~~~~il~~vf~~Tl~mi-------~~~~~~---~Pe~r 821 (1023)
T 4hat_C 753 VEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGH-MIPQGVILILQSVFECTLDMI-------NKDFTE---YPEHR 821 (1023)
T ss_dssp HHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGG-GCHHHHHHHHHHHHHHHHHHH-------SSCSSS---SHHHH
T ss_pred HHHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHH-hhhhhhHHHHHHHHHHHHHHH-------hccccc---ChHHH
Confidence 666777777776666666664 445777777777764 333333333333322100 00 000000 01123
Q ss_pred cccHHHHHHhhhhhccccccccHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHhh
Q 003081 681 SAPLDKVLDCVSSCIHVAHVNDIIEQEKNLVQLFTISLSPGFPWTVKMSAFSSIKELCSRLQK 743 (850)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 743 (850)
..-.+ ++..+...+..++..-...+.+.+..- +.-...+..+++-.+.++.+.++++++..
T Consensus 822 ~~ff~-ll~~~~~~~f~~~~~~~~~~~~~~~~~-~~~a~~h~~r~~~~~~l~~~~~ll~~~~~ 882 (1023)
T 4hat_C 822 VEFYK-LLKVINEKSFAAFLELPPAAFKLFVDA-ICWAFKHNNRDVEVNGLQIALDLVKNIER 882 (1023)
T ss_dssp HHHHH-HHHHHHHHCTHHHHTSCHHHHHHHHHH-HHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHChHHHHcCCHHHHHHHHHH-HHHHcCCCchHHHHHHHHHHHHHHHHHHh
Confidence 33222 443333333222221112233333332 23356688999999999999999998885
No 32
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.42 E-value=2.1e-10 Score=140.04 Aligned_cols=486 Identities=9% Similarity=-0.037 Sum_probs=271.3
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHH
Q 003081 117 LIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKH 196 (850)
Q Consensus 117 lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~ 196 (850)
-+|.+.+.+.+|++.+|+++......+- + . ..-...++.|...+.+++..||+.|+.+|+.|............
T Consensus 116 ~i~~lv~~L~~~~~~~r~~a~~~l~~~~-~--~---~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~ 189 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHAVVNLINYQD-D--A---ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMR 189 (780)
T ss_dssp ----------CCSCHHHHHHHHHHHHHH-H--H---HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTT
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHhhh-H--H---HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHh
Confidence 3666777779999999999877665431 1 1 12245677777777788999999999999999864321111111
Q ss_pred HHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHH-HHhHHHHhhccCCCchhHHHHHHHHH
Q 003081 197 LRRIWTAAFRAMDD-IKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSM-DIVLPFLLAEGILSKVDSISKASIGV 274 (850)
Q Consensus 197 L~~i~~~l~~~ldD-~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l-~~lLP~Ll~~gL~s~~~evr~~a~~~ 274 (850)
.+.+++.+++.|.+ ..+.+|..|..++..++..- + ....+. ...+|.|+. -+.+..+.+|..++.+
T Consensus 190 ~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~----~-------~~~~i~~~g~I~~Lv~-lL~~~~~~v~~~A~~a 257 (780)
T 2z6g_A 190 SPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR----E-------GLLAIFKSGGIPALVN-MLGSPVDSVLFHAITT 257 (780)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSH----H-------HHHHHHHTTHHHHHHH-HTTCSCHHHHHHHHHH
T ss_pred ccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc----h-------hHHHHHHcCCHHHHHH-HHcCCCHHHHHHHHHH
Confidence 23677777777764 37788888876666554210 0 001111 235676663 3455678999999999
Q ss_pred HHHHHHhcCcccccch-HHHHHHHHHhccccchhhhhHHHHhhhhccc----------chhhhHHHHHhhccCCcH----
Q 003081 275 VMKLVKGAGIAIRPHL-SDLVSCMLESLSSLEDQGLNYIELHAANAGI----------QTEKLENLRISIAKGSPM---- 339 (850)
Q Consensus 275 L~~la~~~g~~l~P~l-p~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~----------~~d~id~~r~~~~~~s~l---- 339 (850)
|.+|+......-.... ...+|.|+..|.+..+.+............. ..+.++.+- ...+.+..
T Consensus 258 L~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv-~lL~~~~~~~~~ 336 (780)
T 2z6g_A 258 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV-NIMRTYTYEKLL 336 (780)
T ss_dssp HHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHH-HHHTTCCCHHHH
T ss_pred HHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHH-HHHhcCCHHHHH
Confidence 9999987543222222 4678999999986544432211110000000 001111000 00111100
Q ss_pred ---HHHHHHHHhhcC--hhh-HhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCc
Q 003081 340 ---WDTLDLCINVVD--TES-LDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKS 413 (850)
Q Consensus 340 ---~eal~~~~~~ld--~~~-l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n 413 (850)
..++..+...-. ... -...+|.|...+++. ....+..++.++..|+...... .....+++.++..+ .+.+
T Consensus 337 ~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~-~~~~~~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL-~~~d 412 (780)
T 2z6g_A 337 WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLL-GSDD 412 (780)
T ss_dssp HHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCS-CHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHT-TCSC
T ss_pred HHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCC-chHHHHHHHHHHHHHhccchhh--hhhhhHHHHHHHHH-cCCC
Confidence 011111111000 001 123567777777654 3345667777777776544321 12356888888888 6889
Q ss_pred HHHHHHHHHHHHHHhhhCCHHH--H--HHHHHHHHHhhc--CCc-hhhHHHHHHHHHHHhhchhh--hh-h-hHhhHhHH
Q 003081 414 AAAKRAFASACASVLKYATPSQ--A--QKLIEETAALHI--DDK-NSQISCAILLKSYSSVASDV--LS-G-YHAVIVPV 482 (850)
Q Consensus 414 ~~Vr~~~a~alg~L~~~~~~~~--v--~~li~~l~~~~~--~d~-~~r~~~~~~l~al~~~~~~~--f~-~-~~~~vlP~ 482 (850)
+.||+.++.+++++....+... + ...++.+.+.+. ++. ..|..++.+++.|+...++. .+ . .....+|.
T Consensus 413 ~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~ 492 (780)
T 2z6g_A 413 INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPV 492 (780)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHH
Confidence 9999999999999976532211 1 123555555553 232 66778888888886543331 11 1 11234666
Q ss_pred HHHHhcCCc-hHHHHHHHHHHHHhcCCChhhHHhhH-HHHHHHHHHhhcCCC----------------------HHHHHH
Q 003081 483 IFISRFEDD-KYVSDLFEELWEENTSGDRVTLQLYL-GEIVSLICEGIASSS----------------------WSSKRK 538 (850)
Q Consensus 483 l~~~~~d~~-~~v~~~~~~v~~~l~~~~~~~i~~yl-~eIl~ll~~~L~d~s----------------------~~vr~~ 538 (850)
+.......+ +.++.....++..++.+.... .... ..+++.+...+.+.+ .+++..
T Consensus 493 L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~ 571 (780)
T 2z6g_A 493 VVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEA 571 (780)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHHHHHSSHHHH-HHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHH
T ss_pred HHHHhcCCChHHHHHHHHHHHHHHhcCHHHH-HHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHH
Confidence 655544444 478777666766666542211 1111 123444444443332 346667
Q ss_pred HHHHHHHHHHHhCcchhhhH--HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCchHH-----HHHHHH
Q 003081 539 SAKAICKLGEILGESLSNYH--HVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFA-----IVDMVS 611 (850)
Q Consensus 539 aa~alg~la~~~g~~l~~~l--~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~-----i~~~l~ 611 (850)
++.+|+.++.. ......+ ...+|.|++.+.......+..+..+|..++.. . +.... .++.|.
T Consensus 572 a~~aL~~La~~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~-~--------~~~~~i~~~g~i~~L~ 640 (780)
T 2z6g_A 572 CTGALHILARD--IHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-K--------EAAEAIEAEGATAPLT 640 (780)
T ss_dssp HHHHHHHHTTS--HHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS-H--------HHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhcC--hhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-H--------HHHHHHHHCCCHHHHH
Confidence 77777777631 1111111 34578888888888888999989888887631 1 11111 355677
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHcC
Q 003081 612 SACRKKIKKYREAAFSCLEQVIKAFR 637 (850)
Q Consensus 612 ~e~~r~~~~~R~~Al~~Lg~l~~~~~ 637 (850)
.-+...+..+|..|.++|..++..-+
T Consensus 641 ~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 641 ELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 77778899999999999999887554
No 33
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.41 E-value=4.7e-10 Score=139.67 Aligned_cols=433 Identities=11% Similarity=0.125 Sum_probs=251.1
Q ss_pred hhhchhhhhHHHHHHhhcCCCC---------Hh-HH------------HHHHHHHHHhccCChHHHHHHHHHHHHHHHHh
Q 003081 108 DALKPHLRLLIPKLVRFQYDPD---------KN-VQ------------DAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQ 165 (850)
Q Consensus 108 ~~l~p~L~~lvp~L~r~~~Dp~---------~~-VR------------~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~ 165 (850)
....|++.++++.|++.+.=|. .. || +.+-++...+..- ..++-++.+++.+.+.
T Consensus 383 ~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l---~~~~~~~~~~~~l~~~ 459 (1023)
T 4hat_C 383 HIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHL---NVIDTEEIMISKLARQ 459 (1023)
T ss_dssp GGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHH
Confidence 3467888899999987655443 00 01 0111222222110 1123344455555555
Q ss_pred hCC--CChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhc-----cCcHHHHHHHHHHHHHHHHHHHHhhhccc
Q 003081 166 SGS--RLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMD-----DIKETVRTAGDKLCRSVTSLTIRLCDVTL 238 (850)
Q Consensus 166 l~~--~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ld-----D~k~~VR~aA~~~~~~L~~~~~r~~~~~~ 238 (850)
+.+ .+|+.|||+|+|+|.+.++...+...++++++++.++.+++ |.+..||..+.-++....+|+ ..
T Consensus 460 l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl----~~-- 533 (1023)
T 4hat_C 460 IDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFL----KA-- 533 (1023)
T ss_dssp HSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHH----HH--
T ss_pred hcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHH----hc--
Confidence 553 68999999999999999988877788999999999999887 577777766533333333444 11
Q ss_pred CcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCccc--------ccchHHHHHHHHHhccccchhhhh
Q 003081 239 TEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAI--------RPHLSDLVSCMLESLSSLEDQGLN 310 (850)
Q Consensus 239 ~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l--------~P~lp~Lvp~LL~~Ls~~ep~~~n 310 (850)
..++++.++.+|+ .|+.++.+.|+..|+.++..|++.++..+ .||+++|+..+.+.+...++....
T Consensus 534 -----~~~~L~~vl~~L~-~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~ 607 (1023)
T 4hat_C 534 -----HWNFLRTVILKLF-EFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVH 607 (1023)
T ss_dssp -----CHHHHHHHHHHHH-HHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHH
T ss_pred -----cHHHHHHHHHHHH-HHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHH
Confidence 2347888888888 47877778999999999999999988665 689999999999888765543321
Q ss_pred HHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChh-----hHhhHHHHHHHHHhcc-------CC-C--c--
Q 003081 311 YIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTE-----SLDQLVPHLARLVRSG-------IG-L--N-- 373 (850)
Q Consensus 311 yl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~-----~l~~lvp~L~~~lk~~-------~~-~--~-- 373 (850)
- +++++..++..+..+ .++.+++.+...++.- .. + +
T Consensus 608 ~---------------------------lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~ 660 (1023)
T 4hat_C 608 T---------------------------FYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSET 660 (1023)
T ss_dssp H---------------------------HHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHH
T ss_pred H---------------------------HHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHH
Confidence 1 244555555544321 1233333333322210 00 0 0
Q ss_pred hHh--hHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhcCCc
Q 003081 374 TRV--GVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDK 451 (850)
Q Consensus 374 tr~--~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~~d~ 451 (850)
.+. ...+++..++...|..|.||++.+.+.+++... --+..+.+.. ..-|..+.
T Consensus 661 ~~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~-~~s~~i~~~~-~~~g~~~~---------------------- 716 (1023)
T 4hat_C 661 VKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYR-AVSSMISAQV-AAEGLIAT---------------------- 716 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHCGGGG----------------------
T ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HhCCchhh----------------------
Confidence 111 234455556667777788888877777766551 1111111111 00011100
Q ss_pred hhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHH--HHhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhc
Q 003081 452 NSQISCAILLKSYSSVASDVLSGYHAVIVPVIF--ISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIA 529 (850)
Q Consensus 452 ~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~--~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~ 529 (850)
+......+. .....++.++. +...++.+.+ ...+++.+++.+..--.
T Consensus 717 --~~~~~r~~r-----------~ik~~il~l~~~~i~~~~~~~~~------------------~~~~~~~l~~~vl~dY~ 765 (1023)
T 4hat_C 717 --KTPKVRGLR-----------TIKKEILKLVETYISKARNLDDV------------------VKVLVEPLLNAVLEDYM 765 (1023)
T ss_dssp --GSHHHHHHH-----------HHHHHHHHHHHHHHHHCSCHHHH------------------HHHTHHHHHHHHHHHHH
T ss_pred --ccHHHHHHH-----------HHHHHHHHHHHHHHhcCCCHHHH------------------HHHhHHHHHHHHHHHHH
Confidence 000000011 11112222221 1122111111 11223333333333222
Q ss_pred CCCHHHHHHHH-HHHHHHHHHhCcchhhhHHHHHHHHH----HhcCC--C-ChhhHHHHHHHHHHHHHhcccccccCCCC
Q 003081 530 SSSWSSKRKSA-KAICKLGEILGESLSNYHHVLLESIM----KEVPG--R-LWEGKDALLYAIGSISTSCHKDISAEDPT 601 (850)
Q Consensus 530 d~s~~vr~~aa-~alg~la~~~g~~l~~~l~~llp~L~----~~L~~--r-~~~gKe~vL~aL~~l~~~~~~~l~~~~~~ 601 (850)
......|.+.. .++..++..+|..+.+.++.++..+. +.++. . -++.|...++-+..+...|-..+-.-.++
T Consensus 766 ~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~ 845 (1023)
T 4hat_C 766 NNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPA 845 (1023)
T ss_dssp HSCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHH
T ss_pred hCChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHH
Confidence 22233444433 55666778888877777777766554 33332 2 37889999999999999886655332233
Q ss_pred chHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcC
Q 003081 602 TPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFR 637 (850)
Q Consensus 602 ~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~ 637 (850)
....++..++|.++....++-..++..+-+++..+.
T Consensus 846 ~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~ 881 (1023)
T 4hat_C 846 AFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIE 881 (1023)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHH
Confidence 567788999999999999999999999988887664
No 34
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.41 E-value=1.7e-09 Score=128.59 Aligned_cols=465 Identities=11% Similarity=0.012 Sum_probs=274.7
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHH
Q 003081 117 LIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKH 196 (850)
Q Consensus 117 lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~ 196 (850)
+.+...+++.+++..+|+...-....+.... ++-.-.++..+.+.+.|++.-+|..|..+++.+.. +++
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~----~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~----~~~--- 139 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDER----QDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS----SEM--- 139 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC----HHH---
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC----HHH---
Confidence 4555556667899999988876666666433 22334567778888899999999999999999842 233
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHH
Q 003081 197 LRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVM 276 (850)
Q Consensus 197 L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~ 276 (850)
.+.+.+.+.+.+.|.++.||++|..++..+... .+ +.+..++|.+. .-+.+.++.|+..++.++.
T Consensus 140 ~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~-----~p---------~~v~~~~~~l~-~lL~D~d~~V~~~Al~~L~ 204 (618)
T 1w63_A 140 CRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRK-----VP---------ELMEMFLPATK-NLLNEKNHGVLHTSVVLLT 204 (618)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH-----CG---------GGGGGGGGGTT-TSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-----Ch---------HHHHHHHHHHH-HHhCCCCHhHHHHHHHHHH
Confidence 456777888889999999999987555554332 11 13345666654 3456678899999999999
Q ss_pred HHHHhcCc---ccccchHHHHHHHHHhccc-----------cchhhhhHHHHhhhhcccch----hh-hHHHHHhh----
Q 003081 277 KLVKGAGI---AIRPHLSDLVSCMLESLSS-----------LEDQGLNYIELHAANAGIQT----EK-LENLRISI---- 333 (850)
Q Consensus 277 ~la~~~g~---~l~P~lp~Lvp~LL~~Ls~-----------~ep~~~nyl~~~a~~~~~~~----d~-id~~r~~~---- 333 (850)
.++..... .+.+.+|.++..|-+...+ ..|.....+-.-...+.... +. ++-+..-.
T Consensus 205 ~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~ 284 (618)
T 1w63_A 205 EMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTE 284 (618)
T ss_dssp HHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSC
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccc
Confidence 99765332 3334444444433332211 12322111111111111110 11 11111000
Q ss_pred ----ccCCcHHHHHHHHHhhcChh-hHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhh
Q 003081 334 ----AKGSPMWDTLDLCINVVDTE-SLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVV 408 (850)
Q Consensus 334 ----~~~s~l~eal~~~~~~ld~~-~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l 408 (850)
...+...+++..+...-... .....++.|...+.+. ..+.|..+...+..++.+.+..+.+|.. .++..+
T Consensus 285 ~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~-d~~vr~~aL~~L~~i~~~~p~~~~~~~~----~i~~~l 359 (618)
T 1w63_A 285 TSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNN-DKNIRYVALTSLLKTVQTDHNAVQRHRS----TIVDCL 359 (618)
T ss_dssp CSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCS-STTTHHHHHHHHHHHHHHHHHHHGGGHH----HHHHGG
T ss_pred cccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHHhhCHHHHHHHHH----HHHHHc
Confidence 00012334444433322212 2234567777777764 5678889999999999888877777655 455556
Q ss_pred hhcCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhc-CCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHh
Q 003081 409 KEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISR 487 (850)
Q Consensus 409 ~~D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~-~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~ 487 (850)
+|++..||+.+...+..++... .+..+++.+.+... .|.+.|..+...++.++...++.+..|.+.++.++-...
T Consensus 360 -~d~d~~Ir~~alelL~~l~~~~---nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~ 435 (618)
T 1w63_A 360 -KDLDVSIKRRAMELSFALVNGN---NIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAG 435 (618)
T ss_dssp -GSSCHHHHHHHHHHHHHHCCSS---STHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTG
T ss_pred -cCCChhHHHHHHHHHHHHcccc---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhcc
Confidence 6889999999888887776533 24444555554443 567789888889999887666667777777775543322
Q ss_pred cCCchHHHHHHHHHHHHhcCCChhhHHh-hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcc---------hhhh
Q 003081 488 FEDDKYVSDLFEELWEENTSGDRVTLQL-YLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGES---------LSNY 557 (850)
Q Consensus 488 ~d~~~~v~~~~~~v~~~l~~~~~~~i~~-yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~---------l~~~ 557 (850)
..-..++.....++... .+. ++. .+..+...+.... ....+.+.++-.+|+.+..+... +.|
T Consensus 436 ~~v~~~~~~~l~~ii~~-~p~----l~~~~v~~L~~~l~~~~--~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~- 507 (618)
T 1w63_A 436 SYVRDDAVPNLIQLITN-SVE----MHAYTVQRLYKAILGDY--SQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTE- 507 (618)
T ss_dssp GGSCSSHHHHHHHHHHH-SCS----THHHHHHHHHHHHHHCC--SCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCH-
T ss_pred chhHHHHHHHHHHHHhc-Chh----HHHHHHHHHHHHHhccc--ccHHHHHHHHHHHhhhHHHhcccccccccccCCCH-
Confidence 11112222333333322 122 222 2344444444321 23345557899999998765321 111
Q ss_pred HHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 003081 558 HHVLLESIMKEVP--GRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIK 634 (850)
Q Consensus 558 l~~llp~L~~~L~--~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~ 634 (850)
..+++.|...++ ..+...|..++.|++.+..... +..+.+...+.+.....+.++|..|...+ .++.
T Consensus 508 -~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~--------~~~~~l~~~L~~~~~~~d~evrdRA~~y~-~ll~ 576 (618)
T 1w63_A 508 -DEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFT--------CTVNRIKKVVSIYGSSIDVELQQRAVEYN-ALFK 576 (618)
T ss_dssp -HHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCS--------SCHHHHHHHHHHHTTCSCHHHHHHHHHHH-HHHH
T ss_pred -HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCc--------chHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHHc
Confidence 223334443332 3457889999999999986543 23466666666666667899999998754 4444
No 35
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.41 E-value=5.5e-10 Score=133.45 Aligned_cols=453 Identities=9% Similarity=0.007 Sum_probs=264.8
Q ss_pred HHHHHHHhhhcC-------CchHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhH
Q 003081 60 YKELCNLANEMG-------QPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNV 132 (850)
Q Consensus 60 yk~l~~lA~~~g-------~p~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~V 132 (850)
-+.|.+|+.+-. .+..+..++.+..+......++.|+.+|..+.........-.-...+|.|.+...++++.|
T Consensus 35 ~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v 114 (644)
T 2z6h_A 35 AVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 114 (644)
T ss_dssp HHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHH
Confidence 334555555432 2356777777766543456777888788766543210000111258999999999999999
Q ss_pred HHHHHHHHHHhccCChHHHHHHH-HHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccC
Q 003081 133 QDAMAHIWKSLVADPKRTIDEHL-DLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDI 211 (850)
Q Consensus 133 R~a~~~iw~~Lv~d~~~~i~~~~-~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~ 211 (850)
|..+..+...+..+......... ..+++.|+..+.+++++++..++.+|..+..+.+.....-.-...++.+.+++.+.
T Consensus 115 ~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~ 194 (644)
T 2z6h_A 115 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY 194 (644)
T ss_dssp HHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcC
Confidence 99998888877754322233232 45788899999999999999999999999865321111101114466666777654
Q ss_pred -cHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHH-HhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccc
Q 003081 212 -KETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMD-IVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPH 289 (850)
Q Consensus 212 -k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~-~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~ 289 (850)
.+.++..+..+++.++. +. .....++. ..+|.|+. -+.+...+++..++.+|.+++...... ..
T Consensus 195 ~~~~~~~~a~~~L~nLs~-----~~------~~~~~l~~~g~l~~L~~-ll~~~~~~~~~~a~~~L~nL~~~~~~~--~~ 260 (644)
T 2z6h_A 195 TYEKLLWTTSRVLKVLSV-----CS------SNKPAIVEAGGMQALGL-HLTDPSQRLVQNCLWTLRNLSDAATKQ--EG 260 (644)
T ss_dssp CCHHHHHHHHHHHHHHTT-----CT------THHHHHHHTTHHHHHHT-TTTCSCHHHHHHHHHHHHHHGGGCTTC--CS
T ss_pred ChHHHHHHHHHHHHHHhc-----Cc------ccHHHHHHCCCHHHHHH-HHhcCCHHHHHHHHHHHHHHhhcchhh--hh
Confidence 35666666655555431 11 01112222 35676663 344567889999999999998765432 34
Q ss_pred hHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhcc
Q 003081 290 LSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSG 369 (850)
Q Consensus 290 lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~ 369 (850)
...++|.|+..+.+.++++.....+...+.. ..++ +....+.+ ...+|.|++.+++.
T Consensus 261 ~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~--------------~~~~--~~~~~v~~-------~g~v~~Lv~lL~~~ 317 (644)
T 2z6h_A 261 MEGLLGTLVQLLGSDDINVVTCAAGILSNLT--------------CNNY--KNKMMVCQ-------VGGIEALVRTVLRA 317 (644)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH--------------TTCH--HHHHHHHH-------TTHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH--------------cCCH--HHHHHHHH-------cCCHHHHHHHHHcc
Confidence 5688999999998766555433222221110 0000 00000110 23577777777654
Q ss_pred CC-CchHhhHHHHHHHHHHHhccc--ccc--hHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHH-HH--HHHHH
Q 003081 370 IG-LNTRVGVASFISLLVQKIGMD--IKP--YTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPS-QA--QKLIE 441 (850)
Q Consensus 370 ~~-~~tr~~a~~~l~~L~~~~~~~--~~p--y~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~-~v--~~li~ 441 (850)
.. ...+..++.+|..|+.+.+.. .+. .....++.+...+..+.+..+++.++.+++.+....... .+ ...++
T Consensus 318 ~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~ 397 (644)
T 2z6h_A 318 GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIP 397 (644)
T ss_dssp TTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHH
T ss_pred CCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHH
Confidence 22 456778888888875432210 000 112457788888843334789999999999987542211 11 12344
Q ss_pred HHHHhhcC-----------------------CchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHH
Q 003081 442 ETAALHID-----------------------DKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLF 498 (850)
Q Consensus 442 ~l~~~~~~-----------------------d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~ 498 (850)
.+.+.+.. +++.+..++.++..++........-.....+|.+.....+.+++++...
T Consensus 398 ~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a 477 (644)
T 2z6h_A 398 RLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVA 477 (644)
T ss_dssp HHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHH
Confidence 44443321 1223445555666665432111111123456766666677788888877
Q ss_pred HHHHHHhcCCChhhHHhhHH--HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhC
Q 003081 499 EELWEENTSGDRVTLQLYLG--EIVSLICEGIASSSWSSKRKSAKAICKLGEILG 551 (850)
Q Consensus 499 ~~v~~~l~~~~~~~i~~yl~--eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g 551 (850)
..++..+... ...+..+. ..++.+...+.+++.++|..|+.+|+.++...+
T Consensus 478 ~~aL~~l~~~--~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~ 530 (644)
T 2z6h_A 478 AGVLCELAQD--KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 530 (644)
T ss_dssp HHHHHHHHTS--HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHcC--HHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCc
Confidence 7766665543 11222221 235677788899999999999999999876543
No 36
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.38 E-value=3.5e-09 Score=125.76 Aligned_cols=400 Identities=11% Similarity=0.026 Sum_probs=245.1
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcc
Q 003081 158 IFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVT 237 (850)
Q Consensus 158 Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~ 237 (850)
.+.++++.+.+++...|..+-.++..++...+ + .+.-+...+.+-+.|.++.||..|..++..++ .
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~--e---~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~-------~-- 136 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDERQ--D---VHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG-------S-- 136 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCH--H---HHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC-------C--
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhCCCc--H---HHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC-------C--
Confidence 44555667778899999999999988876431 1 22344556667788999999988754443331 1
Q ss_pred cCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhh
Q 003081 238 LTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAA 317 (850)
Q Consensus 238 ~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~ 317 (850)
.++...++|.+. +.+.+.++.||..|+.++.++.+..+..+. .+++.+...+.+.+|.+......
T Consensus 137 -------~~~~~~l~~~l~-~~L~~~~~~VRk~A~~al~~l~~~~p~~v~----~~~~~l~~lL~D~d~~V~~~Al~--- 201 (618)
T 1w63_A 137 -------SEMCRDLAGEVE-KLLKTSNSYLRKKAALCAVHVIRKVPELME----MFLPATKNLLNEKNHGVLHTSVV--- 201 (618)
T ss_dssp -------HHHHHHHHHHHH-HHHHSCCHHHHHHHHHHHHHHHHHCGGGGG----GGGGGTTTSTTCCCHHHHHHHHH---
T ss_pred -------HHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHChHHHH----HHHHHHHHHhCCCCHhHHHHHHH---
Confidence 135566777765 456778899999999999999987665443 44555666666665554321110
Q ss_pred hcccchhhhHHHHHhhccCCcHHHHHHHHHhhcC--hhhHhhHHHHHHHHHhcc-------------CCCc-hHhhHHHH
Q 003081 318 NAGIQTEKLENLRISIAKGSPMWDTLDLCINVVD--TESLDQLVPHLARLVRSG-------------IGLN-TRVGVASF 381 (850)
Q Consensus 318 ~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld--~~~l~~lvp~L~~~lk~~-------------~~~~-tr~~a~~~ 381 (850)
++..+...-. ...+..++|.+.+.+++- +..+ .++...++
T Consensus 202 ------------------------~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~ 257 (618)
T 1w63_A 202 ------------------------LLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRL 257 (618)
T ss_dssp ------------------------HHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHH
T ss_pred ------------------------HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHH
Confidence 1111110000 012344566666666531 0111 23344455
Q ss_pred HHHHHHHhcccccchHHHHHHHHHHhhh-----hcCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhc-CCchhhH
Q 003081 382 ISLLVQKIGMDIKPYTSMLLRLLFPVVK-----EEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI-DDKNSQI 455 (850)
Q Consensus 382 l~~L~~~~~~~~~py~~~lL~~Ll~~l~-----~D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~-~d~~~r~ 455 (850)
+..++...+ ...+.+++.+.+.+. .+.+..|.-+++.++..+.. .+......++.+...+. .|++.|.
T Consensus 258 L~~l~~~~~----~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~--~~~l~~~a~~~L~~~L~~~d~~vr~ 331 (618)
T 1w63_A 258 LRILGRNDD----DSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS--ESGLRVLAINILGRFLLNNDKNIRY 331 (618)
T ss_dssp HHHHTTTCH----HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC--CHHHHHHHHHHHHHHHTCSSTTTHH
T ss_pred HHHhCCCCH----HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhCCCCchHH
Confidence 544432211 112233333333321 12345777777777766521 22223334455555554 5778899
Q ss_pred HHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCCCHHH
Q 003081 456 SCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSS 535 (850)
Q Consensus 456 ~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~~v 535 (850)
.+...+..++...|+.|.++...+++ ...|++.++|....+++..++... .+. .|++.+...+.+.+.++
T Consensus 332 ~aL~~L~~i~~~~p~~~~~~~~~i~~----~l~d~d~~Ir~~alelL~~l~~~~--nv~----~iv~eL~~~l~~~d~e~ 401 (618)
T 1w63_A 332 VALTSLLKTVQTDHNAVQRHRSTIVD----CLKDLDVSIKRRAMELSFALVNGN--NIR----GMMKELLYFLDSCEPEF 401 (618)
T ss_dssp HHHHHHHHHHHHHHHHHGGGHHHHHH----GGGSSCHHHHHHHHHHHHHHCCSS--STH----HHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHH----HccCCChhHHHHHHHHHHHHcccc--cHH----HHHHHHHHHHHhCCHHH
Confidence 99999999998888888777665554 456788899999889988887743 233 34455555566678899
Q ss_pred HHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHh
Q 003081 536 KRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACR 615 (850)
Q Consensus 536 r~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~ 615 (850)
|..+..+||.+|..+.+.+..+++.++..|...- ...+..++..+..++.... .....+++.+...+.
T Consensus 402 r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~----~~v~~~~~~~l~~ii~~~p--------~l~~~~v~~L~~~l~ 469 (618)
T 1w63_A 402 KADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAG----SYVRDDAVPNLIQLITNSV--------EMHAYTVQRLYKAIL 469 (618)
T ss_dssp HHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTG----GGSCSSHHHHHHHHHHHSC--------STHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhcc----chhHHHHHHHHHHHHhcCh--------hHHHHHHHHHHHHHh
Confidence 9999999999999887777777777776665543 2234456666777765432 233445555555544
Q ss_pred h--cCHHHHHHHHHHHHHHHHHcCC
Q 003081 616 K--KIKKYREAAFSCLEQVIKAFRD 638 (850)
Q Consensus 616 r--~~~~~R~~Al~~Lg~l~~~~~~ 638 (850)
. ......+.++|++|++...+.+
T Consensus 470 ~~~~~~~~~~~~~wilGEy~~~i~~ 494 (618)
T 1w63_A 470 GDYSQQPLVQVAAWCIGEYGDLLVS 494 (618)
T ss_dssp HCCSCSHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHHhhhHHHhcc
Confidence 3 2344556799999999987643
No 37
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.38 E-value=3.3e-10 Score=135.39 Aligned_cols=465 Identities=8% Similarity=-0.037 Sum_probs=277.4
Q ss_pred hHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHH--HHHHHHHHHhhCC-CChhHHHHHHHHHHHHHccCCc-h
Q 003081 116 LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHL--DLIFDDLLIQSGS-RLWRSREASCLSLADIIQGRKF-D 191 (850)
Q Consensus 116 ~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~--~~Il~~Ll~~l~~-~~wRVReaa~~Al~~Ll~~~~~-~ 191 (850)
..+|.|..+..++++.||..+..+...+..+.. .....+ ..+++.|+..+.+ .++.+|..++.+|..|...... .
T Consensus 14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~-~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~ 92 (644)
T 2z6h_A 14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL 92 (644)
T ss_dssp TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTT-HHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCh-hHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHH
Confidence 357777777789999999999999999987653 222222 3577888888765 4789999999999987654210 1
Q ss_pred hhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHH-HHhHHHHhhccCCCchhHHHHH
Q 003081 192 QVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSM-DIVLPFLLAEGILSKVDSISKA 270 (850)
Q Consensus 192 ~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l-~~lLP~Ll~~gL~s~~~evr~~ 270 (850)
.+.. ...++.+.+++.+..+.||..|..++..++... + .....+. ...+|.|+. -+.+.+++++..
T Consensus 93 ~i~~--~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~----~------~~~~~v~~~g~i~~Lv~-lL~~~~~~~~~~ 159 (644)
T 2z6h_A 93 AIFK--SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ----E------GAKMAVRLAGGLQKMVA-LLNKTNVKFLAI 159 (644)
T ss_dssp HHHT--TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS----T------THHHHHHHTTHHHHHHH-GGGCCCHHHHHH
T ss_pred HHHH--cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc----c------hhHHHHHHCCChHHHHH-HHCcCCHHHHHH
Confidence 1111 247788888998888999998876666554210 0 0011122 356777763 355556788888
Q ss_pred HHHHHHHHHHhcCcc-cccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhh
Q 003081 271 SIGVVMKLVKGAGIA-IRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINV 349 (850)
Q Consensus 271 a~~~L~~la~~~g~~-l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ 349 (850)
++.+|..++...... ..-.-...+|.|+..+.+..++...+... .++..+...
T Consensus 160 a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~--------------------------~~L~nLs~~ 213 (644)
T 2z6h_A 160 TTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTS--------------------------RVLKVLSVC 213 (644)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHH--------------------------HHHHHHTTC
T ss_pred HHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHH--------------------------HHHHHHhcC
Confidence 899999988532110 00011245777777776543221111000 011111000
Q ss_pred cC--hhhH-hhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHH
Q 003081 350 VD--TESL-DQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACAS 426 (850)
Q Consensus 350 ld--~~~l-~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~ 426 (850)
-. ...+ ...+|.|.+.+++. ....+..++.++..|+..... . .....+++.++..+ .+.++.|++.++.++++
T Consensus 214 ~~~~~~l~~~g~l~~L~~ll~~~-~~~~~~~a~~~L~nL~~~~~~-~-~~~~~~i~~Lv~lL-~~~d~~v~~~a~~aL~~ 289 (644)
T 2z6h_A 214 SSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWTLRNLSDAATK-Q-EGMEGLLGTLVQLL-GSDDINVVTCAAGILSN 289 (644)
T ss_dssp TTHHHHHHHTTHHHHHHTTTTCS-CHHHHHHHHHHHHHHGGGCTT-C-CSCHHHHHHHHHHT-TCSCHHHHHHHHHHHHH
T ss_pred cccHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHhhcchh-h-hhhhhHHHHHHHHH-cCCCHHHHHHHHHHHHH
Confidence 00 0001 23567777777664 445566788888877654322 1 23457888899988 67889999999999999
Q ss_pred HhhhCCHH--HH--HHHHHHHHHhhc--CC-chhhHHHHHHHHHHHhhchh--hhhh--hHhhHhHHHHHHhcCC-chHH
Q 003081 427 VLKYATPS--QA--QKLIEETAALHI--DD-KNSQISCAILLKSYSSVASD--VLSG--YHAVIVPVIFISRFED-DKYV 494 (850)
Q Consensus 427 L~~~~~~~--~v--~~li~~l~~~~~--~d-~~~r~~~~~~l~al~~~~~~--~f~~--~~~~vlP~l~~~~~d~-~~~v 494 (850)
+....+.. .+ ...++.+...+. ++ +..+..++.+++.|+...++ ..+. .....+|.+.....++ ++.+
T Consensus 290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v 369 (644)
T 2z6h_A 290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 369 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHH
T ss_pred HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHH
Confidence 97643221 11 123555555553 22 46677888888888654332 1111 1123567666555544 3577
Q ss_pred HHHHHHHHHHhcCCChhhHHhh-HHHHHHHHHHhhcCCC----------------------HHHHHHHHHHHHHHHHHhC
Q 003081 495 SDLFEELWEENTSGDRVTLQLY-LGEIVSLICEGIASSS----------------------WSSKRKSAKAICKLGEILG 551 (850)
Q Consensus 495 ~~~~~~v~~~l~~~~~~~i~~y-l~eIl~ll~~~L~d~s----------------------~~vr~~aa~alg~la~~~g 551 (850)
+.....++..++.+.... ... -..+++.+...+.+.+ .+++..+..+|+.++...
T Consensus 370 ~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~- 447 (644)
T 2z6h_A 370 IKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV- 447 (644)
T ss_dssp HHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSH-
T ss_pred HHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCH-
Confidence 777777766666543221 111 1234444444444433 345666667777666422
Q ss_pred cchhhhH--HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCchHH-----HHHHHHHHHhhcCHHHHHH
Q 003081 552 ESLSNYH--HVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFA-----IVDMVSSACRKKIKKYREA 624 (850)
Q Consensus 552 ~~l~~~l--~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~-----i~~~l~~e~~r~~~~~R~~ 624 (850)
.....+ ...+|.|.+.+.+...+.+..+..+|..++.. . +.... .++.+..-+...++.+|..
T Consensus 448 -~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~-~--------~~~~~i~~~g~l~~L~~ll~~~~~~vr~~ 517 (644)
T 2z6h_A 448 -HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-K--------EAAEAIEAEGATAPLTELLHSRNEGVATY 517 (644)
T ss_dssp -HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-H--------HHHHHHHHTTCHHHHHHHTTCSCHHHHHH
T ss_pred -HHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-H--------HHHHHHHHcCChhHHHHHHcCCCHHHHHH
Confidence 111111 24678888888887888888888888877632 1 11111 2456677777889999999
Q ss_pred HHHHHHHHHHHc
Q 003081 625 AFSCLEQVIKAF 636 (850)
Q Consensus 625 Al~~Lg~l~~~~ 636 (850)
|..+|+.+...-
T Consensus 518 A~~aL~~l~~~~ 529 (644)
T 2z6h_A 518 AAAVLFRMSEDK 529 (644)
T ss_dssp HHHHHHHHTTTS
T ss_pred HHHHHHHHhccC
Confidence 999999986543
No 38
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.37 E-value=6.7e-10 Score=128.75 Aligned_cols=457 Identities=9% Similarity=-0.027 Sum_probs=267.6
Q ss_pred hHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHH--HHHHHHHHHhhC-CCChhHHHHHHHHHHHHHccCCchh
Q 003081 116 LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHL--DLIFDDLLIQSG-SRLWRSREASCLSLADIIQGRKFDQ 192 (850)
Q Consensus 116 ~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~--~~Il~~Ll~~l~-~~~wRVReaa~~Al~~Ll~~~~~~~ 192 (850)
..+|.|..+..++++.||..+..+...+..+.. .....+ ...++.|+..+. +++|.+|..++.+|..+.....
T Consensus 17 ~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~-~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~--- 92 (529)
T 1jdh_A 17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE--- 92 (529)
T ss_dssp CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHH-HHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH---
T ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCc-cHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCch---
Confidence 467888888899999999999998888886542 222222 246777777774 4589999999999999865421
Q ss_pred hhHHHH--HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHH-HHhHHHHhhccCCCchhHHHH
Q 003081 193 VGKHLR--RIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSM-DIVLPFLLAEGILSKVDSISK 269 (850)
Q Consensus 193 l~~~L~--~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l-~~lLP~Ll~~gL~s~~~evr~ 269 (850)
....+. ..++.+.+.+.+..+.||..|..++..+... ++. ....+. ...+|.|+. -+.++.++++.
T Consensus 93 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-----~~~-----~~~~i~~~g~i~~L~~-ll~~~~~~~~~ 161 (529)
T 1jdh_A 93 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH-----QEG-----AKMAVRLAGGLQKMVA-LLNKTNVKFLA 161 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH-----CTT-----HHHHHHHHTHHHHHHH-GGGCCCHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-----Ccc-----hHHHHHHcCCHHHHHH-HHhcCCHHHHH
Confidence 111111 4778888899888899998887665555321 000 011121 346777763 34556788999
Q ss_pred HHHHHHHHHHHhcC---cccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHH
Q 003081 270 ASIGVVMKLVKGAG---IAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLC 346 (850)
Q Consensus 270 ~a~~~L~~la~~~g---~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~ 346 (850)
.++.++..++.... ..+.. ...+|.|+..+.+.+++...+... .++..+
T Consensus 162 ~~~~~L~~la~~~~~~~~~i~~--~~~i~~L~~ll~~~~~~~~~~~a~--------------------------~~L~~l 213 (529)
T 1jdh_A 162 ITTDCLQILAYGNQESKLIILA--SGGPQALVNIMRTYTYEKLLWTTS--------------------------RVLKVL 213 (529)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH--TTHHHHHHHHHHHCCCHHHHHHHH--------------------------HHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHH--CCCHHHHHHHHHhCChHHHHHHHH--------------------------HHHHHH
Confidence 99899988875311 11111 134666666665443332211110 011111
Q ss_pred HhhcC--hhh-HhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHH
Q 003081 347 INVVD--TES-LDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASA 423 (850)
Q Consensus 347 ~~~ld--~~~-l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~a 423 (850)
...-+ ... -...+|.|.+.+++. ....+..++.++..|+...+. . .....+++.+++.+ .+.++.++..++.+
T Consensus 214 ~~~~~~~~~~~~~g~~~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~-~-~~~~~~i~~L~~ll-~~~~~~v~~~a~~~ 289 (529)
T 1jdh_A 214 SVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWTLRNLSDAATK-Q-EGMEGLLGTLVQLL-GSDDINVVTCAAGI 289 (529)
T ss_dssp TTSTTHHHHHHHTTHHHHHHTTTTSS-CHHHHHHHHHHHHHHHTTCTT-C-SCCHHHHHHHHHHT-TCSCHHHHHHHHHH
T ss_pred hcCcccHHHHHHCCCHHHHHHHHhCC-ChHHHHHHHHHHHHHhcCChh-h-HHHHhHHHHHHHHH-cCCCHHHHHHHHHH
Confidence 00000 000 123567777777664 444566788888877654332 1 23457888899988 68899999999999
Q ss_pred HHHHhhhCCHHHHH-----HHHHHHHHhhc---CCchhhHHHHHHHHHHHhhchhh--hh-hh-HhhHhHHHHHHhcCCc
Q 003081 424 CASVLKYATPSQAQ-----KLIEETAALHI---DDKNSQISCAILLKSYSSVASDV--LS-GY-HAVIVPVIFISRFEDD 491 (850)
Q Consensus 424 lg~L~~~~~~~~v~-----~li~~l~~~~~---~d~~~r~~~~~~l~al~~~~~~~--f~-~~-~~~vlP~l~~~~~d~~ 491 (850)
++++....+ +... ..++.+.+.+. +++..+..+..+++.++...++. .. .. ....+|.+.....++.
T Consensus 290 L~~L~~~~~-~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~ 368 (529)
T 1jdh_A 290 LSNLTCNNY-KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS 368 (529)
T ss_dssp HHHHTTTCH-HHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTC
T ss_pred HHHHhcCCH-HHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhcccc
Confidence 999976432 2211 23455555553 22456777888888886543321 11 11 1234666655555544
Q ss_pred -hHHHHHHHHHHHHhcCCChhhHHhhH-HHHHHHHHHhhcCCCHHHHHHHHHHHH----------------------HHH
Q 003081 492 -KYVSDLFEELWEENTSGDRVTLQLYL-GEIVSLICEGIASSSWSSKRKSAKAIC----------------------KLG 547 (850)
Q Consensus 492 -~~v~~~~~~v~~~l~~~~~~~i~~yl-~eIl~ll~~~L~d~s~~vr~~aa~alg----------------------~la 547 (850)
+.++.....++..++.+.... .... ..+++.+...+.+.++.+|..|+.+++ .++
T Consensus 369 ~~~v~~~a~~~l~nl~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~ 447 (529)
T 1jdh_A 369 HWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA 447 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHhcChhhh-HHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHh
Confidence 477777666766666543222 2221 346677777777777777776554443 332
Q ss_pred HHhCcchhhh--HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCchHH-----HHHHHHHHHhhcCHH
Q 003081 548 EILGESLSNY--HHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFA-----IVDMVSSACRKKIKK 620 (850)
Q Consensus 548 ~~~g~~l~~~--l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~-----i~~~l~~e~~r~~~~ 620 (850)
... ..... -...+|.|++.+.+...+.+.....+|..++.. . +.... .++.+..-....++.
T Consensus 448 ~~~--~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~-~--------~~~~~i~~~~~~~~L~~l~~~~~~~ 516 (529)
T 1jdh_A 448 RDV--HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-K--------EAAEAIEAEGATAPLTELLHSRNEG 516 (529)
T ss_dssp TSH--HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-H--------HHHHHHHHTTCHHHHHHGGGCSSHH
T ss_pred cCc--hHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC-H--------HHHHHHHHcCChHHHHHHhcCCCHH
Confidence 210 00000 123557888888777788888888888876521 1 11111 245666677778999
Q ss_pred HHHHHHHHHHHH
Q 003081 621 YREAAFSCLEQV 632 (850)
Q Consensus 621 ~R~~Al~~Lg~l 632 (850)
+|..|.++|..+
T Consensus 517 v~~~a~~aL~~l 528 (529)
T 1jdh_A 517 VATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999998765
No 39
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.37 E-value=2.4e-09 Score=128.73 Aligned_cols=524 Identities=12% Similarity=0.062 Sum_probs=302.9
Q ss_pred hhhhhhHHhhHHHHHHHhh-----hhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHH--HHHHHH
Q 003081 89 LNSKRGAAFGFSKIAKQAG-----DALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHL--DLIFDD 161 (850)
Q Consensus 89 w~sr~gAa~gl~~I~~~~~-----~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~--~~Il~~ 161 (850)
-++|..|+.++..+++..+ +.+...+.+.|...+ ...|...+|+- ......+.+.+.+.....+ +-.++.
T Consensus 218 ~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a--~~alt~i~~g~~~~~~~~~~~~G~v~~ 294 (810)
T 3now_A 218 GSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKL-LAPDMESKVRV--TVAITALLNGPLDVGNQVVAREGILQM 294 (810)
T ss_dssp TTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHH-SSCCHHHHHHH--HHHHHHHHSSSHHHHHHHHHTTTHHHH
T ss_pred hhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHh-ccCChHhHHHH--HHHHHHHhcCCHHHHHHHHhccchHHH
Confidence 3677788888999988653 333333333333321 11233334432 3333445566655544444 357888
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHHccCCchh-hhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCc
Q 003081 162 LLIQSGSRLWRSREASCLSLADIIQGRKFDQ-VGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTE 240 (850)
Q Consensus 162 Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~-l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~ 240 (850)
++..+++++..+++.|+++++....+...-. +..+ .+ +.+..++....+.+|.-|...+..++... ..++..
T Consensus 295 li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~--gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~--~~d~~~-- 367 (810)
T 3now_A 295 ILAMATTDDELQQRVACECLIAASSKKDKAKALCEQ--GV-DILKRLYHSKNDGIRVRALVGLCKLGSYG--GQDAAI-- 367 (810)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHH--HH-HHHHHHTTCSCHHHHHHHHHHHHHHHTTT--TTTTSC--
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHc--Cc-HHHHHHHcCCCHHHHHHHHHHHHHhcccc--ccCccc--
Confidence 8999999999999999999999766522111 2222 12 66666676666778875543333332100 001110
Q ss_pred chhHHhHHHHhHHHHhhccCCCc--hhHHHHHHHHHHHHHHHhcC--cccccchHHHHHHHHHhccccchhhhhHHHH-h
Q 003081 241 ISDARQSMDIVLPFLLAEGILSK--VDSISKASIGVVMKLVKGAG--IAIRPHLSDLVSCMLESLSSLEDQGLNYIEL-H 315 (850)
Q Consensus 241 ~~~~~~~l~~lLP~Ll~~gL~s~--~~evr~~a~~~L~~la~~~g--~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~-~ 315 (850)
.......+..++|.+. +.|.++ ..+++..+++.|..++.... ..+.- -+..+|.|++.+++.++.. .|-.. .
T Consensus 368 ~~~~~g~i~~Lv~~l~-~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~-d~g~Ip~LV~LL~s~d~~i-~~~al~~ 444 (810)
T 3now_A 368 RPFGDGAALKLAEACR-RFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIE-DKASIHALMDLARGGNQSC-LYGVVTT 444 (810)
T ss_dssp CSSTTTHHHHHHHHHH-HHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHH-CHHHHHHHHHHHHTTCGGG-HHHHHHH
T ss_pred cchhhccHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHH-ccchHHHHHHHhCCCChHH-HHHHHHH
Confidence 1111123445555554 233444 67899999999999976432 11111 1467888888887655443 34322 2
Q ss_pred hhhcccc---hhhhHHHHHh--hc-----cCCcHHHH--HHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHH
Q 003081 316 AANAGIQ---TEKLENLRIS--IA-----KGSPMWDT--LDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFIS 383 (850)
Q Consensus 316 a~~~~~~---~d~id~~r~~--~~-----~~s~l~ea--l~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~ 383 (850)
..+.... ++.++.++.- .. ..+|+.+. ...-++.+- -...+|.|.++++++ ....|..++.+|.
T Consensus 445 L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vv---eaGaVp~LV~LL~s~-s~~vqe~Aa~aL~ 520 (810)
T 3now_A 445 FVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLA---NEGITTALCALAKTE-SHNSQELIARVLN 520 (810)
T ss_dssp HHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHH---HTTHHHHHHHHHTCC-CHHHHHHHHHHHH
T ss_pred HHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHH---HCcCHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 2221100 1111111000 00 01122111 110011110 124789999999875 4567888999998
Q ss_pred HHHHHhcccccchH-H-HHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHH------HHHHHHHHHHhhcCCch--h
Q 003081 384 LLVQKIGMDIKPYT-S-MLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQ------AQKLIEETAALHIDDKN--S 453 (850)
Q Consensus 384 ~L~~~~~~~~~py~-~-~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~------v~~li~~l~~~~~~d~~--~ 453 (850)
.++... ..+..+ + ..++.|+..+ .+.++.+++.++.|++.++....++. +...++.|..++..+.. .
T Consensus 521 NLA~d~--~~r~~Vv~~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~ 597 (810)
T 3now_A 521 AVCGLK--ELRGKVVQEGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALE 597 (810)
T ss_dssp HHHTSH--HHHHHHHHTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHH
T ss_pred HHcCCH--HHHHHHHHCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHH
Confidence 887421 122221 1 3577788888 56778899999999999987655433 23467888887754322 2
Q ss_pred hHHHHHHHHHHHhhchhhhhhhH-hhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhH--HHHHHHHHHhhcC
Q 003081 454 QISCAILLKSYSSVASDVLSGYH-AVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYL--GEIVSLICEGIAS 530 (850)
Q Consensus 454 r~~~~~~l~al~~~~~~~f~~~~-~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl--~eIl~ll~~~L~d 530 (850)
+..++.++..++....+.-.... .-.+|.+...+.+.++.++..+.+++..++.+.. ....+. ...++.+...+.+
T Consensus 598 ~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~-~~~~~v~~~g~l~~Lv~LL~s 676 (810)
T 3now_A 598 NFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED-VIKMFEGNNDRVKFLALLCED 676 (810)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHH-HHHHHHSSSSHHHHHHHGGGC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChH-HHHHHHhccCcHHHHHHHhcC
Confidence 34566677777665433221111 2345555544455677899888888888877543 344444 2478889999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhCcchhhhH--HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHH
Q 003081 531 SSWSSKRKSAKAICKLGEILGESLSNYH--HVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVD 608 (850)
Q Consensus 531 ~s~~vr~~aa~alg~la~~~g~~l~~~l--~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~ 608 (850)
++..+|..|+.+|+.++..........+ ...+|.|.+-+...+...|...+.++..++.+..+... .- .-...++
T Consensus 677 ~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~-~l--~e~G~i~ 753 (810)
T 3now_A 677 EDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAK-KL--FETDIME 753 (810)
T ss_dssp SSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHH-HH--HTSTHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHH-HH--HHCCCHH
Confidence 9999999999999999974332222222 35778888888888889999999999998864321100 00 0011344
Q ss_pred HHHHHHhh---cCHHHHHHHHHHHHHHHHHc
Q 003081 609 MVSSACRK---KIKKYREAAFSCLEQVIKAF 636 (850)
Q Consensus 609 ~l~~e~~r---~~~~~R~~Al~~Lg~l~~~~ 636 (850)
.+..-++. ++.+++..|+.+|..+++.-
T Consensus 754 ~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g 784 (810)
T 3now_A 754 LLSGLGQLPDDTRAKAREVATQCLAAAERYR 784 (810)
T ss_dssp HHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence 55544432 46889999999998877653
No 40
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.36 E-value=1.3e-09 Score=126.45 Aligned_cols=430 Identities=10% Similarity=0.015 Sum_probs=250.6
Q ss_pred CchHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhchhh--hhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChH
Q 003081 72 QPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHL--RLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKR 149 (850)
Q Consensus 72 ~p~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L--~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~ 149 (850)
.+..+..++.+..+...|..++.|+.+|..+..... ....+ ...+|.|.++..++++.||..+..+...+..+...
T Consensus 57 ~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~--~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 134 (529)
T 1jdh_A 57 SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE--GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG 134 (529)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH--HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTT
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCch--hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcc
Confidence 346777788777655458888899988888754321 11111 25899999999999999999998877777654322
Q ss_pred HHHHHH-HHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCch--hhhHHHHHHHHHHHHHhccC-cHHHHHHHHHHHHH
Q 003081 150 TIDEHL-DLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFD--QVGKHLRRIWTAAFRAMDDI-KETVRTAGDKLCRS 225 (850)
Q Consensus 150 ~i~~~~-~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~--~l~~~L~~i~~~l~~~ldD~-k~~VR~aA~~~~~~ 225 (850)
...... ...++.|+..+.+++|++|..++.++..+..+.+.. .+.. ...++.+.+++.+. .+.++.++..+++.
T Consensus 135 ~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~--~~~i~~L~~ll~~~~~~~~~~~a~~~L~~ 212 (529)
T 1jdh_A 135 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA--SGGPQALVNIMRTYTYEKLLWTTSRVLKV 212 (529)
T ss_dssp HHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHH--TTHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHH--CCCHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 222222 357888888999999999999999999987653211 1111 13455555655543 34455555554444
Q ss_pred HHHHHHHhhhcccCcchhHHhHH-HHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhcccc
Q 003081 226 VTSLTIRLCDVTLTEISDARQSM-DIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSL 304 (850)
Q Consensus 226 L~~~~~r~~~~~~~~~~~~~~~l-~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ 304 (850)
++. ++ .....++ ...+|.|+. -+.+..++++..++.++.+++...... .....++|.|++.+.+.
T Consensus 213 l~~-----~~------~~~~~~~~~g~~~~L~~-ll~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~i~~L~~ll~~~ 278 (529)
T 1jdh_A 213 LSV-----CS------SNKPAIVEAGGMQALGL-HLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSD 278 (529)
T ss_dssp HTT-----ST------THHHHHHHTTHHHHHHT-TTTSSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCS
T ss_pred Hhc-----Cc------ccHHHHHHCCCHHHHHH-HHhCCChHHHHHHHHHHHHHhcCChhh--HHHHhHHHHHHHHHcCC
Confidence 431 11 0111122 246777663 344567889999999999999765432 24568899999999876
Q ss_pred chhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccC-CCchHhhHHHHHH
Q 003081 305 EDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGI-GLNTRVGVASFIS 383 (850)
Q Consensus 305 ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~-~~~tr~~a~~~l~ 383 (850)
++++.....+...+... .++ +....+.+ ...+|.|.+.+++.. ....+..++.++.
T Consensus 279 ~~~v~~~a~~~L~~L~~--------------~~~--~~~~~~~~-------~~~v~~L~~ll~~~~~~~~v~~~a~~~L~ 335 (529)
T 1jdh_A 279 DINVVTCAAGILSNLTC--------------NNY--KNKMMVCQ-------VGGIEALVRTVLRAGDREDITEPAICALR 335 (529)
T ss_dssp CHHHHHHHHHHHHHHTT--------------TCH--HHHHHHHH-------TTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhc--------------CCH--HHHHHHHH-------cCChHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 66554333222221100 000 00011111 135677777776532 2356678888888
Q ss_pred HHHHHhccc--cc-ch-HHHHHHHHHHhhhhcCc-HHHHHHHHHHHHHHhhhCCHH-HH--HHHHHHHHHhhc-CCchhh
Q 003081 384 LLVQKIGMD--IK-PY-TSMLLRLLFPVVKEEKS-AAAKRAFASACASVLKYATPS-QA--QKLIEETAALHI-DDKNSQ 454 (850)
Q Consensus 384 ~L~~~~~~~--~~-py-~~~lL~~Ll~~l~~D~n-~~Vr~~~a~alg~L~~~~~~~-~v--~~li~~l~~~~~-~d~~~r 454 (850)
.|+...+.. .+ .. ....++.+...+ .+.+ ..+++.++.+++.+....... .+ ...++.+.+.+. .+++.|
T Consensus 336 nl~~~~~~~~~~~~~i~~~~~i~~L~~lL-~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~ 414 (529)
T 1jdh_A 336 HLTSRHQEAEMAQNAVRLHYGLPVVVKLL-HPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQ 414 (529)
T ss_dssp HHTSSSTTHHHHHHHHHHTTCHHHHHHTT-STTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC
T ss_pred HHHcCCchHHHHHHHHHHcCChhHHHHHh-ccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHH
Confidence 775432211 00 01 113467778888 4444 689999999999987632211 11 123455555442 122222
Q ss_pred H----------------------HHHHHHHHHHhhchhhhhh-hHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChh
Q 003081 455 I----------------------SCAILLKSYSSVASDVLSG-YHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRV 511 (850)
Q Consensus 455 ~----------------------~~~~~l~al~~~~~~~f~~-~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~ 511 (850)
. .+..++..++.. ++.-.. .-...+|.+.....+.+++++......+..+....
T Consensus 415 ~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~-~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~-- 491 (529)
T 1jdh_A 415 RRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD-VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK-- 491 (529)
T ss_dssp -----------CBTTBCHHHHHHHHHHHHHHHTTS-HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSH--
T ss_pred HHHhcccCchhhhccccHHHHHHHHHHHHHHHhcC-chHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCH--
Confidence 2 233333444332 111000 11234566666667778889888777776665431
Q ss_pred hHHhhH--HHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 003081 512 TLQLYL--GEIVSLICEGIASSSWSSKRKSAKAICKL 546 (850)
Q Consensus 512 ~i~~yl--~eIl~ll~~~L~d~s~~vr~~aa~alg~l 546 (850)
.....+ ...++.+...+.|++.++|..|..++..+
T Consensus 492 ~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 492 EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 111111 23457788888999999999999998765
No 41
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.33 E-value=1.5e-09 Score=132.52 Aligned_cols=439 Identities=9% Similarity=0.002 Sum_probs=258.4
Q ss_pred CchHHHHHHHHhccchhhhhhhhHHhhHHHHHHHh--hhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChH
Q 003081 72 QPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQA--GDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKR 149 (850)
Q Consensus 72 ~p~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~--~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~ 149 (850)
.+..+..++.+..+......|+.|+.+|..+.... ...+. -...+|.|..+..++++.||..+..+...|..+...
T Consensus 190 ~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~--~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~ 267 (780)
T 2z6g_A 190 SPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIF--KSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEG 267 (780)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHH--HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT
T ss_pred ccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHH--HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChh
Confidence 34667777776654434677888888888765322 11111 125899999999999999999999888888765432
Q ss_pred HHHHHH-HHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCch--hhhHHHHHHHHHHHHHhccCcH-HHHHHHHHHHHH
Q 003081 150 TIDEHL-DLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFD--QVGKHLRRIWTAAFRAMDDIKE-TVRTAGDKLCRS 225 (850)
Q Consensus 150 ~i~~~~-~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~--~l~~~L~~i~~~l~~~ldD~k~-~VR~aA~~~~~~ 225 (850)
...... ..+++.|+..+.+.++++|+.++.++..+..+.... .+.. ...++.+++++.+... .++..+..+++.
T Consensus 268 ~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~--~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~ 345 (780)
T 2z6g_A 268 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA--SGGPQALVNIMRTYTYEKLLWTTSRVLKV 345 (780)
T ss_dssp HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHT--TTHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHH--cCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 222222 357888888998899999999999999887543211 1111 1345566666665443 445555555555
Q ss_pred HHHHHHHhhhcccCcchhHHhHH-HHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhcccc
Q 003081 226 VTSLTIRLCDVTLTEISDARQSM-DIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSL 304 (850)
Q Consensus 226 L~~~~~r~~~~~~~~~~~~~~~l-~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ 304 (850)
++. +.. ....++ ..++|.|+. -+.+...+++..++.+|.+++...... .....++|.|++.+.+.
T Consensus 346 Ls~-----~~~------~~~~i~~~g~l~~Ll~-lL~~~~~~~~~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL~~~ 411 (780)
T 2z6g_A 346 LSV-----CSS------NKPAIVEAGGMQALGL-HLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSD 411 (780)
T ss_dssp HHT-----STT------HHHHHHHTTHHHHHGG-GTTCSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCS
T ss_pred hhc-----ChH------HHHHHHHhchHHHHHH-HHcCCchHHHHHHHHHHHHHhccchhh--hhhhhHHHHHHHHHcCC
Confidence 432 110 111222 245677763 244566788999999999999776442 23578999999999876
Q ss_pred chhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCC-chHhhHHHHHH
Q 003081 305 EDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGL-NTRVGVASFIS 383 (850)
Q Consensus 305 ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~-~tr~~a~~~l~ 383 (850)
++.+.....+...+... .++ +....++. ...+|.|++.+.+.... ..+..++.+|.
T Consensus 412 d~~vr~~A~~aL~~L~~--------------~~~--~~~~~i~~-------~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~ 468 (780)
T 2z6g_A 412 DINVVTCAAGILSNLTC--------------NNY--KNKMMVCQ-------VGGIEALVRTVLRAGDREDITEPAICALR 468 (780)
T ss_dssp CHHHHHHHHHHHHHHTS--------------SCH--HHHHHHHT-------TTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh--------------CCH--HHHHHHHH-------CCCHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 66554333222221100 000 00000110 23567777777653222 56778888887
Q ss_pred HHHHHhccc--cc-c-hHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHH-HH--HHHHHHHHHhhcC-C-----
Q 003081 384 LLVQKIGMD--IK-P-YTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPS-QA--QKLIEETAALHID-D----- 450 (850)
Q Consensus 384 ~L~~~~~~~--~~-p-y~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~-~v--~~li~~l~~~~~~-d----- 450 (850)
.|+...+.. .+ . .....++.|+..+..+....|++.++.+++.+....... .+ ...++.+.+.+.. +
T Consensus 469 nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~ 548 (780)
T 2z6g_A 469 HLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR 548 (780)
T ss_dssp HTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHH
Confidence 775332210 00 0 011346777788743334589999999999997532111 01 1233444443321 1
Q ss_pred -----------------chhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhH
Q 003081 451 -----------------KNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTL 513 (850)
Q Consensus 451 -----------------~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i 513 (850)
++.+..++.++..++........-....++|.+.....+.++.++.....++..+... ...
T Consensus 549 ~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~--~~~ 626 (780)
T 2z6g_A 549 RTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEA 626 (780)
T ss_dssp TTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS--HHH
T ss_pred HHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--HHH
Confidence 2234455556666553211111011133566666666677888888877776666533 222
Q ss_pred HhhHHH--HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcc
Q 003081 514 QLYLGE--IVSLICEGIASSSWSSKRKSAKAICKLGEILGES 553 (850)
Q Consensus 514 ~~yl~e--Il~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~ 553 (850)
+..+.+ .++.+...+.+++..+|..|+.+|..++..-+..
T Consensus 627 ~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~~ 668 (780)
T 2z6g_A 627 AEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQD 668 (780)
T ss_dssp HHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHh
Confidence 333333 5677888899999999999999999998755433
No 42
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.30 E-value=2.7e-08 Score=117.99 Aligned_cols=466 Identities=11% Similarity=0.026 Sum_probs=288.6
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHH
Q 003081 117 LIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKH 196 (850)
Q Consensus 117 lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~ 196 (850)
+.+...+.+.+++...|+...-.|..+....+ +..-.++..+.+.++|++.-+|-.|..+++.+.. ++ +
T Consensus 75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~----e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~----~e---~ 143 (621)
T 2vgl_A 75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSNS----ELIRLINNAIKNDLASRNPTFMGLALHCIANVGS----RE---M 143 (621)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCH----HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC----HH---H
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHccCCc----HHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC----HH---H
Confidence 56666667899999999999999998886543 3345567778888889999999999999999832 22 4
Q ss_pred HHHHHHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHH--HhHHHHhhccCCCchhHHHHHHH
Q 003081 197 LRRIWTAAFRAM--DDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMD--IVLPFLLAEGILSKVDSISKASI 272 (850)
Q Consensus 197 L~~i~~~l~~~l--dD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~--~lLP~Ll~~gL~s~~~evr~~a~ 272 (850)
.+.+.+.+.+.+ .|.++.||+.|.-++..+.+. ++. .+. .+++.|. +-+.+.++-|+..++
T Consensus 144 ~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~-----~p~---------~~~~~~~~~~l~-~lL~d~d~~V~~~a~ 208 (621)
T 2vgl_A 144 AEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRT-----SPD---------LVPMGDWTSRVV-HLLNDQHLGVVTAAT 208 (621)
T ss_dssp HHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHH-----CGG---------GCCCCSCHHHHH-HHTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh-----Chh---------hcCchhHHHHHH-HHhCCCCccHHHHHH
Confidence 557788888899 999999999886555555332 221 111 3344433 224566788999999
Q ss_pred HHHHHHHHhcCcccccchHHHHHHHHHhcccc-------------chhhhhHHHHhhhhcccch--h-------hhHHHH
Q 003081 273 GVVMKLVKGAGIAIRPHLSDLVSCMLESLSSL-------------EDQGLNYIELHAANAGIQT--E-------KLENLR 330 (850)
Q Consensus 273 ~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~-------------ep~~~nyl~~~a~~~~~~~--d-------~id~~r 330 (850)
.++.+++...+..+.+++|.++..|-+.+... .|...-.+-.....+...+ + .++..-
T Consensus 209 ~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il 288 (621)
T 2vgl_A 209 SLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETIL 288 (621)
T ss_dssp HHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 99999999877778888998888777665321 1222111111122222111 1 011100
Q ss_pred Hh-------------hccCCcHHHHHHHHHhhc-ChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccch
Q 003081 331 IS-------------IAKGSPMWDTLDLCINVV-DTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPY 396 (850)
Q Consensus 331 ~~-------------~~~~s~l~eal~~~~~~l-d~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py 396 (850)
.. ....+.++|++..++..- +.+.+...+..|...+.+. +.+.|-.+...+..++.+.+. .++
T Consensus 289 ~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~--~~~ 365 (621)
T 2vgl_A 289 NKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS--HEA 365 (621)
T ss_dssp HHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT--HHH
T ss_pred HhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc--HHH
Confidence 00 001133455555444322 2233455666676666543 456777888888877765431 123
Q ss_pred HHHHHHHHHHhhhh-cCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhc-CCchhhHHHHHHHHHHHhhchhhhhh
Q 003081 397 TSMLLRLLFPVVKE-EKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSG 474 (850)
Q Consensus 397 ~~~lL~~Ll~~l~~-D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~-~d~~~r~~~~~~l~al~~~~~~~f~~ 474 (850)
..+....++..+ . |++.+||+.+...+ .+.+.+..+..++..+.+... .|.+.|..+...++.++...++.+..
T Consensus 366 ~~~~~~~i~~~L-~~d~d~~Ir~~aL~lL---~~l~~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~ 441 (621)
T 2vgl_A 366 VKTHIETVINAL-KTERDVSVRQRAVDLL---YAMCDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTW 441 (621)
T ss_dssp HHTTHHHHHHHH-TTCCCHHHHHHHHHHH---HHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHH
T ss_pred HHHHHHHHHHHh-ccCCCHhHHHHHHHHH---HHHcChhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 344455566666 5 78899997765554 444677777778777776654 46777877777777777655666777
Q ss_pred hHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHHHHhCc
Q 003081 475 YHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSS--WSSKRKSAKAICKLGEILGE 552 (850)
Q Consensus 475 ~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s--~~vr~~aa~alg~la~~~g~ 552 (850)
|.+.++.++-.+...-..++...+.++... .+ .++.| ++..+...+.++. ..+-+.++-.+|+-+..+.+
T Consensus 442 ~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~-~~----~~~~~---~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~ 513 (621)
T 2vgl_A 442 YVDTILNLIRIAGDYVSEEVWYRVIQIVIN-RD----DVQGY---AAKTVFEALQAPACHENLVKVGGYILGEFGNLIAG 513 (621)
T ss_dssp HHHHHHHHHHHHGGGSCSHHHHHHHHHHGG-GC----SCHHH---HHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHS
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHhC-Ch----hHHHH---HHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcc
Confidence 778777766543222222232222222211 11 23333 3344455566653 35666777888887765433
Q ss_pred c--hhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHh--hcCHHHHHHHHHH
Q 003081 553 S--LSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACR--KKIKKYREAAFSC 628 (850)
Q Consensus 553 ~--l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~--r~~~~~R~~Al~~ 628 (850)
. .. -..++..+.+.+...+...|..+|.|+..+.....+ ..+.+...+..... ..++++|..|...
T Consensus 514 ~~~~~--p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~--------~~~~i~~~l~~~~~~~~~d~evrdRA~~y 583 (621)
T 2vgl_A 514 DPRSS--PLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE--------VKATIQDVLRSDSQLKNADVELQQRAVEY 583 (621)
T ss_dssp STTSC--HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG--------GHHHHHHHHSSHHHHSCSSHHHHHHHHHH
T ss_pred cCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH--------HHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 1 11 124566777777777889999999999999765432 34555555555555 6889999999865
Q ss_pred HHHHHH
Q 003081 629 LEQVIK 634 (850)
Q Consensus 629 Lg~l~~ 634 (850)
+.++.
T Consensus 584 -~~Ll~ 588 (621)
T 2vgl_A 584 -LRLST 588 (621)
T ss_dssp -HHHHH
T ss_pred -HHHHc
Confidence 45554
No 43
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.30 E-value=1.3e-08 Score=122.39 Aligned_cols=470 Identities=11% Similarity=0.041 Sum_probs=284.1
Q ss_pred hHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhchh--hhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHH
Q 003081 74 DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPH--LRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTI 151 (850)
Q Consensus 74 ~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~--L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i 151 (850)
+++-.|+...-.......+--|+.+++.|+.+..+.-... -...+|.|.+....+++.+|+.+..++..+..++ ...
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~-~~R 324 (810)
T 3now_A 246 DQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKK-DKA 324 (810)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSH-HHH
T ss_pred HHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCc-HHH
Confidence 3455555433212223344456778888887654322211 1256777777788999999999999999888773 222
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcc----CCchhhh-HHHHHHHHHHHHHhccC--cHHHHHHHHHHHH
Q 003081 152 DEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQG----RKFDQVG-KHLRRIWTAAFRAMDDI--KETVRTAGDKLCR 224 (850)
Q Consensus 152 ~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~----~~~~~l~-~~L~~i~~~l~~~ldD~--k~~VR~aA~~~~~ 224 (850)
+...+.-++.|...+.+++.++|.-+..+|..+-.. .+.+.+. .-+..+++.+.+.+.+. ...+|+.|...+.
T Consensus 325 ~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLa 404 (810)
T 3now_A 325 KALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLA 404 (810)
T ss_dssp HTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 211222236666666677789999999999988642 1112222 33667788888887765 5678887765544
Q ss_pred HHHHHHHHhhhcccCcchhHHhHH--HHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcC-c-------ccccc-----
Q 003081 225 SVTSLTIRLCDVTLTEISDARQSM--DIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAG-I-------AIRPH----- 289 (850)
Q Consensus 225 ~L~~~~~r~~~~~~~~~~~~~~~l--~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g-~-------~l~P~----- 289 (850)
.++. ++ ..-..+. ...+|.|++- +.++...++..++.+|++|+.... . .+..|
T Consensus 405 yLS~------~~-----~vk~~lv~d~g~Ip~LV~L-L~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v 472 (810)
T 3now_A 405 YLTL------DA-----ECKEKLIEDKASIHALMDL-ARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHI 472 (810)
T ss_dssp HHTT------SH-----HHHHHHHHCHHHHHHHHHH-HHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSC
T ss_pred HHhC------Cc-----HHHHHHHHccchHHHHHHH-hCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccC
Confidence 4421 00 0011122 2456666531 224557788899999999987431 0 01111
Q ss_pred -----------hH---------HHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhh
Q 003081 290 -----------LS---------DLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINV 349 (850)
Q Consensus 290 -----------lp---------~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ 349 (850)
.. ..+|.|.+++++..|.+.....+ ++..+..
T Consensus 473 ~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~---------------------------aL~NLA~- 524 (810)
T 3now_A 473 PEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIAR---------------------------VLNAVCG- 524 (810)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHH---------------------------HHHHHHT-
T ss_pred ccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHH---------------------------HHHHHcC-
Confidence 11 24677777776655443221111 1211111
Q ss_pred cChhh----H-hhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhccc--ccc-hHHHHHHHHHHhhhhcCcHHHHHHHH
Q 003081 350 VDTES----L-DQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMD--IKP-YTSMLLRLLFPVVKEEKSAAAKRAFA 421 (850)
Q Consensus 350 ld~~~----l-~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~--~~p-y~~~lL~~Ll~~l~~D~n~~Vr~~~a 421 (850)
+.+. + ...+|.|+..++++ ....|..|+..|..|+...... |.. .....++.|+..|..+.+...+..++
T Consensus 525 -d~~~r~~Vv~~Gaip~Lv~LL~s~-~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl 602 (810)
T 3now_A 525 -LKELRGKVVQEGGVKALLRMALEG-TEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESL 602 (810)
T ss_dssp -SHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHH
T ss_pred -CHHHHHHHHHCCCHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHH
Confidence 1110 1 23678888888875 3456778999998887653221 211 12246788888884344555566788
Q ss_pred HHHHHHhhhCCHHHHH-----HHHHHHHHhhc-CCchhhHHHHHHHHHHHhhchhhhhhhH--hhHhHHHHHHhcCCchH
Q 003081 422 SACASVLKYATPSQAQ-----KLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYH--AVIVPVIFISRFEDDKY 493 (850)
Q Consensus 422 ~alg~L~~~~~~~~v~-----~li~~l~~~~~-~d~~~r~~~~~~l~al~~~~~~~f~~~~--~~vlP~l~~~~~d~~~~ 493 (850)
.|+.+|....+ +... ..++.+.+++. +++..|..++.++..|+.. ++....+. ...+|.+.......+..
T Consensus 603 ~AL~NLa~~~d-~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s~d~~ 680 (810)
T 3now_A 603 MALTNLASMNE-SVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS-EDVIKMFEGNNDRVKFLALLCEDEDEE 680 (810)
T ss_dssp HHHHHHTTSCH-HHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGCSSHH
T ss_pred HHHHHHhcCCH-HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-hHHHHHHHhccCcHHHHHHHhcCCCHH
Confidence 89999886542 2221 24566766664 4566788888888888653 33333333 24677666555666778
Q ss_pred HHHHHHHHHHHhcCCChhhHHhhHH--HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhH--HHHHHHHHHhc
Q 003081 494 VSDLFEELWEENTSGDRVTLQLYLG--EIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYH--HVLLESIMKEV 569 (850)
Q Consensus 494 v~~~~~~v~~~l~~~~~~~i~~yl~--eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l--~~llp~L~~~L 569 (850)
++..+...+..++.+....++.... ..++.+...+.+++.++|+.|+.+++.++.. +.....++ ...+|.|.+-+
T Consensus 681 vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL 759 (810)
T 3now_A 681 TATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLG 759 (810)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHH
Confidence 8888777777776644344444443 4778888889999999999999999999873 22222222 34678888877
Q ss_pred CC---CChhhHHHHHHHHHHHHH
Q 003081 570 PG---RLWEGKDALLYAIGSIST 589 (850)
Q Consensus 570 ~~---r~~~gKe~vL~aL~~l~~ 589 (850)
+. +.....+.++++|..+..
T Consensus 760 ~~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 760 QLPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp CCTTSTTHHHHHHHHHHHHHHHH
T ss_pred hCcccCcHHHHHHHHHHHHHHHh
Confidence 43 457788889999988764
No 44
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.29 E-value=4e-08 Score=122.24 Aligned_cols=558 Identities=11% Similarity=0.087 Sum_probs=320.2
Q ss_pred HHHHhhh---cCCchHHHHHHHHhccchhhhhhhhHHhhHHHHH----HHhh------------------hhhchh-hhh
Q 003081 63 LCNLANE---MGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIA----KQAG------------------DALKPH-LRL 116 (850)
Q Consensus 63 l~~lA~~---~g~p~lv~~fm~la~~~~~w~sr~gAa~gl~~I~----~~~~------------------~~l~p~-L~~ 116 (850)
|..++.. -+||+++..++.+..++. . + .+...+-.|+ +... +.|... ++.
T Consensus 114 la~l~~~~~p~~Wp~~i~~l~~~~~~~~-~--~-~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~ 189 (980)
T 3ibv_A 114 LTLLFLQLYPSNWNDFFASLQGVIAASS-Q--S-EFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSD 189 (980)
T ss_dssp HHHHHHHHTTTTCTTHHHHHHHHHHHHC-C--H-HHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHhCcccCchHHHHHHHHhcCCC-h--h-HHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHH
Confidence 4444443 488999999998876542 1 1 2333333333 3321 111111 233
Q ss_pred HHHHHH----hhcCCCCHhHHHHHHHHHHHhccCChHHHHHHH-HHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCc-
Q 003081 117 LIPKLV----RFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHL-DLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKF- 190 (850)
Q Consensus 117 lvp~L~----r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~-~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~- 190 (850)
+++..+ .|...+++.++..+.++.+..+.-.+ +...+ +.+++.++..+.+ ..+|++||.+|.+++.....
T Consensus 190 i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~--~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~ 265 (980)
T 3ibv_A 190 IVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN--INLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKP 265 (980)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC--HHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC--HHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCCh
Confidence 344443 44444788999999999998886432 11111 6788888888876 58999999999999975432
Q ss_pred hhhhHHHHHHHHHHHHHhc-----cCcHHHHHHHHHHHHHHHHHHHHhhhccc--Ccc---hhHHhHHHHhHHHHhhccC
Q 003081 191 DQVGKHLRRIWTAAFRAMD-----DIKETVRTAGDKLCRSVTSLTIRLCDVTL--TEI---SDARQSMDIVLPFLLAEGI 260 (850)
Q Consensus 191 ~~l~~~L~~i~~~l~~~ld-----D~k~~VR~aA~~~~~~L~~~~~r~~~~~~--~~~---~~~~~~l~~lLP~Ll~~gL 260 (850)
+.-.+.+..+ .+...+. +....+++...++...++...+.. +... ..+ ......+..++|.++. -.
T Consensus 266 ~~k~~li~~l--~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~-~~ 341 (980)
T 3ibv_A 266 LEKLNLLNIL--NLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAI-KSDPSELSPELKENCSFQLYNLFPYLIR-YL 341 (980)
T ss_dssp HHHHHHHHHH--HHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHH-HH
T ss_pred hhHHHHHHHH--hHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH-ccCccccchhhhhhHHHHHHHHHHHHHH-Hh
Confidence 2211111111 1111111 233456665556666666555444 3211 000 1233577788999884 23
Q ss_pred CCchhHHHHHHHHHHHHHHHhc---------CcccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHH
Q 003081 261 LSKVDSISKASIGVVMKLVKGA---------GIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRI 331 (850)
Q Consensus 261 ~s~~~evr~~a~~~L~~la~~~---------g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~ 331 (850)
..+..+|-..++..|....... ...++|+++.|++.++.-+.-.++.. +..+....+++++.+.|.
T Consensus 342 ~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~-----~~~~~d~ed~~~F~e~Rk 416 (980)
T 3ibv_A 342 SDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQE-----WDDDPDSEEEAEFQEMRK 416 (980)
T ss_dssp TCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCC-----CCCCSSSSTHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccc-----cccccchhHHHHHHHHHH
Confidence 4456788888888888776531 24467889999999888886433211 111111123455555665
Q ss_pred hhccCCcHHHHHHHHHhhcChhh-Hh----hHHHHHHHHHh--ccCCCchHhhHHHHHHHHHHHhcc------cccchHH
Q 003081 332 SIAKGSPMWDTLDLCINVVDTES-LD----QLVPHLARLVR--SGIGLNTRVGVASFISLLVQKIGM------DIKPYTS 398 (850)
Q Consensus 332 ~~~~~s~l~eal~~~~~~ld~~~-l~----~lvp~L~~~lk--~~~~~~tr~~a~~~l~~L~~~~~~------~~~py~~ 398 (850)
... ++-+++..++.+. ++ .+.+.+.+.+. ....|+.+.++...+..++..+.. ...++.+
T Consensus 417 ~l~-------~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp 489 (980)
T 3ibv_A 417 KLK-------IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPT 489 (980)
T ss_dssp HHH-------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBC
T ss_pred HHH-------HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhH
Confidence 332 4556666666443 34 34444444442 112477778888888777654432 2234556
Q ss_pred HHHHHHHHhh----hhcCcHHHHHHHHHHHHHHhhhCC--HHHHHHHHHHHHH--hhc-CCchhhHHHHHHHHHHHhhch
Q 003081 399 MLLRLLFPVV----KEEKSAAAKRAFASACASVLKYAT--PSQAQKLIEETAA--LHI-DDKNSQISCAILLKSYSSVAS 469 (850)
Q Consensus 399 ~lL~~Ll~~l----~~D~n~~Vr~~~a~alg~L~~~~~--~~~v~~li~~l~~--~~~-~d~~~r~~~~~~l~al~~~~~ 469 (850)
.+++.+...+ ..+.++.||..++..+|+..+... ++.+...++.+.. ... .+...|..|+.++..+++.+.
T Consensus 490 ~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~ 569 (980)
T 3ibv_A 490 VLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK 569 (980)
T ss_dssp HHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence 6666666654 127899999999999999776532 3345555555554 332 234568889999999999988
Q ss_pred hhhhhhHhhHhHHHHHHhc---CC----c------h---------HHHHHHHHHHHHhcCC---ChhhHHhhHHHHHHH-
Q 003081 470 DVLSGYHAVIVPVIFISRF---ED----D------K---------YVSDLFEELWEENTSG---DRVTLQLYLGEIVSL- 523 (850)
Q Consensus 470 ~~f~~~~~~vlP~l~~~~~---d~----~------~---------~v~~~~~~v~~~l~~~---~~~~i~~yl~eIl~l- 523 (850)
..+.+|.+.++..+-.... .+ + + +-..++ +..+-+++. .......|+..+++-
T Consensus 570 ~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~-eaig~li~~~~~~~e~~~~~l~~ll~pl 648 (980)
T 3ibv_A 570 KQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLF-ETVGVLISSGNLTPEEQALYCDSLINAL 648 (980)
T ss_dssp TTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHH-HHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHH-HHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 8877777776654321111 11 1 1 111122 222222221 112234555555443
Q ss_pred ---HHHhhcCC----CHH-HHHHHHHHHHHHHHHhCcc------hhhhHHHHHHHHHHhcC--CCChhhHHHHHHHHHHH
Q 003081 524 ---ICEGIASS----SWS-SKRKSAKAICKLGEILGES------LSNYHHVLLESIMKEVP--GRLWEGKDALLYAIGSI 587 (850)
Q Consensus 524 ---l~~~L~d~----s~~-vr~~aa~alg~la~~~g~~------l~~~l~~llp~L~~~L~--~r~~~gKe~vL~aL~~l 587 (850)
+...+... +.. .-+....++|.+++.+.+. +...+.++++.+...+. .+....|+++..++..+
T Consensus 649 ~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~ 728 (980)
T 3ibv_A 649 IGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRI 728 (980)
T ss_dssp HHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 44444322 111 1123456678888755321 33456788888877774 56688999999999999
Q ss_pred HHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCc---hhHHhHHHHHHhh
Q 003081 588 STSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDP---KFFNIIFPLLFEM 652 (850)
Q Consensus 588 ~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~~~---~~~~iv~~~l~~~ 652 (850)
+...+..+ .|+++.++..++..+.... =...+..+|.++..|+.+ -+.+.+.|++..+
T Consensus 729 i~~lg~~~----~p~lp~~i~~ll~~~~~~e---~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~i 789 (980)
T 3ibv_A 729 INVVGPDM----LPKVPQLISILLNSIDMNE---LVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRI 789 (980)
T ss_dssp TTTTHHHH----TTTHHHHHHHHHHHCCTTT---HHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHH
T ss_pred HHHccHhH----HHHHHHHHHHHHhcCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776654 3788999988885543222 345789999999999875 1344445555443
No 45
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.27 E-value=2.9e-09 Score=132.44 Aligned_cols=442 Identities=10% Similarity=0.122 Sum_probs=245.6
Q ss_pred hhhchhhhhHHHHHHh-hcCCCC---------------HhHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHhh---C
Q 003081 108 DALKPHLRLLIPKLVR-FQYDPD---------------KNVQDAMAHIWKSLVA-DPKRTIDEHLDLIFDDLLIQS---G 167 (850)
Q Consensus 108 ~~l~p~L~~lvp~L~r-~~~Dp~---------------~~VR~a~~~iw~~Lv~-d~~~~i~~~~~~Il~~Ll~~l---~ 167 (850)
+...|++.++++.+++ ..||++ -..|+.+..+.+.+.. ++...++.-++.+.+.+-+.+ .
T Consensus 374 ~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~ 453 (980)
T 3ibv_A 374 ASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSP 453 (980)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccC
Confidence 3445788888888774 555442 1466666644444432 222222222224444333434 2
Q ss_pred CCChhHHHHHHHHHHHHHccCCch-----hhhHHHHHHHHHHHHHhc-----cCcHHHHHHHHHHHHHHHHHHHHhhhcc
Q 003081 168 SRLWRSREASCLSLADIIQGRKFD-----QVGKHLRRIWTAAFRAMD-----DIKETVRTAGDKLCRSVTSLTIRLCDVT 237 (850)
Q Consensus 168 ~~~wRVReaa~~Al~~Ll~~~~~~-----~l~~~L~~i~~~l~~~ld-----D~k~~VR~aA~~~~~~L~~~~~r~~~~~ 237 (850)
+.+|+.+|++..+++.+-++.... ...++++.+++.+.++++ +.++.||.++..++...++|+. .
T Consensus 454 ~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~----~- 528 (980)
T 3ibv_A 454 ENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFD----Y- 528 (980)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGG----T-
T ss_pred CCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHh----c-
Confidence 457999999999999998875532 123566677777777765 8899999988666555555542 1
Q ss_pred cCcchhHHhHHHHhHHHHhh-ccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccc-cchhhhhHHHHh
Q 003081 238 LTEISDARQSMDIVLPFLLA-EGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSS-LEDQGLNYIELH 315 (850)
Q Consensus 238 ~~~~~~~~~~l~~lLP~Ll~-~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~-~ep~~~nyl~~~ 315 (850)
..+++..+|++++. +|+.++++.||..|+.++.++++.+++.|.||++.|+..+-..|.. .+|...
T Consensus 529 ------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~------ 596 (980)
T 3ibv_A 529 ------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTD------ 596 (980)
T ss_dssp ------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC------
T ss_pred ------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCc------
Confidence 12478888998884 3898888999999999999999999999999999999888877762 111100
Q ss_pred hhhc-cc-----chhhhHHHHHhhccCCcHHHHHHHHHhhcC--h----hhHhhHHHHHHHHHh----ccCCC-chHhh-
Q 003081 316 AANA-GI-----QTEKLENLRISIAKGSPMWDTLDLCINVVD--T----ESLDQLVPHLARLVR----SGIGL-NTRVG- 377 (850)
Q Consensus 316 a~~~-~~-----~~d~id~~r~~~~~~s~l~eal~~~~~~ld--~----~~l~~lvp~L~~~lk----~~~~~-~tr~~- 377 (850)
.+.. .. .++.+|.. -+++|+++.++...+ . ..+..+++.+.+.+. ..... ..+..
T Consensus 597 ~~~~~~~~~~~~~~~~~~~q-------l~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i 669 (980)
T 3ibv_A 597 MDAPVPTLNSSIRNSDFNSQ-------LYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISV 669 (980)
T ss_dssp --CSSCCHHHHHHTTTHHHH-------HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHH
T ss_pred ccccccchhhhcccCCchHH-------HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHH
Confidence 0000 00 00011111 146788887776543 1 134555555444443 22111 11221
Q ss_pred --HHHHHHHHHHHhc---ccccch---HHHHHHHHHHhhhh-cCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhc
Q 003081 378 --VASFISLLVQKIG---MDIKPY---TSMLLRLLFPVVKE-EKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI 448 (850)
Q Consensus 378 --a~~~l~~L~~~~~---~~~~py---~~~lL~~Ll~~l~~-D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~ 448 (850)
....++.++.-+. ....|. ..+.++.++..+.. ..+..||++...++.+++...+.+ +.++++.+.+.+.
T Consensus 670 ~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~-~~p~lp~~i~~ll 748 (980)
T 3ibv_A 670 YCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPD-MLPKVPQLISILL 748 (980)
T ss_dssp HHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHH-HTTTHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHh-HHHHHHHHHHHHH
Confidence 2223344443321 111232 33555666555521 467899999999999999987765 4444554444332
Q ss_pred C--CchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHH----HHHhcCCc---------hHHHHHHHHHHHHhcC-CChhh
Q 003081 449 D--DKNSQISCAILLKSYSSVASDVLSGYHAVIVPVI----FISRFEDD---------KYVSDLFEELWEENTS-GDRVT 512 (850)
Q Consensus 449 ~--d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l----~~~~~d~~---------~~v~~~~~~v~~~l~~-~~~~~ 512 (850)
. +...-.....+++.+....++.+.+.+..+++.+ |.....+. +.++..+......+.. +..+.
T Consensus 749 ~~~~~~e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v 828 (980)
T 3ibv_A 749 NSIDMNELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSI 828 (980)
T ss_dssp HHCCTTTHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGG
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhh
Confidence 1 1222223344445554444444545555555433 32222211 1244444444444333 22221
Q ss_pred -----HHhhHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHhCc-----chhhh-HHHHHHHHHHhcCCCChh
Q 003081 513 -----LQLYLGEIVSLICEGIAS-SSWSSKRKSAKAICKLGEILGE-----SLSNY-HHVLLESIMKEVPGRLWE 575 (850)
Q Consensus 513 -----i~~yl~eIl~ll~~~L~d-~s~~vr~~aa~alg~la~~~g~-----~l~~~-l~~llp~L~~~L~~r~~~ 575 (850)
-+.+++.++..+..+..+ ++...++.|...+..++...|+ .|..+ +. ++|...+.....+++
T Consensus 829 ~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~~~~~~~~gf~~f~~~-~~~~~f~~p~~~~f~ 902 (980)
T 3ibv_A 829 LFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSLWGGKDGIAGFENFTLS-LTPLCFEMPVNPNFN 902 (980)
T ss_dssp GGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC-------CCHHHHHHH-HHHHHHHGGGC----
T ss_pred hcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHH-HHHHHHHhhcCCCCC
Confidence 246788888887776433 6778999999999999987643 35555 45 777666655333333
No 46
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.21 E-value=6.4e-10 Score=115.82 Aligned_cols=195 Identities=14% Similarity=0.064 Sum_probs=157.7
Q ss_pred HhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHH
Q 003081 355 LDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPS 434 (850)
Q Consensus 355 l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~ 434 (850)
++.+-|.+.+.+.+. .|..|.+++..|..++..++....+...++++.+...+..|.|..||..++.+++.++
T Consensus 13 ~~~l~~~l~~~l~s~-~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la------ 85 (242)
T 2qk2_A 13 LSKMPKDFYDKLEEK-KWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLA------ 85 (242)
T ss_dssp GGGSCTTHHHHHTCS-SHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH------
T ss_pred cccCCHHHHhhhccC-CHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH------
Confidence 344555677777654 7889999999999988875544445557889999988822899999888877776543
Q ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHH
Q 003081 435 QAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQ 514 (850)
Q Consensus 435 ~v~~li~~l~~~~~~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~ 514 (850)
+..+..|.+|...++|.++....|..+.||+.....+..+....
T Consensus 86 -------------------------------~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~----- 129 (242)
T 2qk2_A 86 -------------------------------KGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST----- 129 (242)
T ss_dssp -------------------------------HHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS-----
T ss_pred -------------------------------HHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC-----
Confidence 23356788999999999998888888899999888888877653
Q ss_pred hhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCc--chhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcc
Q 003081 515 LYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGE--SLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCH 592 (850)
Q Consensus 515 ~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~--~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~ 592 (850)
.++.+++.+...+.+.+|.+|..+...|+.++...+. .+.++++.++|.|...+.++.|..|....++++.++...+
T Consensus 130 -~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 130 -SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp -CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred -CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 2467888888889999999999999999998877653 3577899999999999999999999999999999998776
Q ss_pred c
Q 003081 593 K 593 (850)
Q Consensus 593 ~ 593 (850)
.
T Consensus 209 ~ 209 (242)
T 2qk2_A 209 D 209 (242)
T ss_dssp H
T ss_pred H
Confidence 4
No 47
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.20 E-value=1.8e-10 Score=120.78 Aligned_cols=157 Identities=11% Similarity=0.114 Sum_probs=128.0
Q ss_pred hHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhh-hhhc-hhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHH
Q 003081 74 DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAG-DALK-PHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTI 151 (850)
Q Consensus 74 ~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~-~~l~-p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i 151 (850)
+++..+.......++..-|.+|+.+++.++++.+ ..+. ||...++|.|+..+.|..+.||+++..+..+++.......
T Consensus 60 ~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~ 139 (249)
T 2qk1_A 60 NLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLA 139 (249)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccc
Confidence 3444444444222234567899999999999998 8899 9999999999999999999999999888888875321111
Q ss_pred H-HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCc--hhhhHHH-HHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Q 003081 152 D-EHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKF--DQVGKHL-RRIWTAAFRAMDDIKETVRTAGDKLCRSVT 227 (850)
Q Consensus 152 ~-~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~--~~l~~~L-~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~ 227 (850)
. .|++.+|+.|+..+.+++|++|+.++..++.++...+. ..+.+|+ +++++.+.++|+|.++.||++|..++..+.
T Consensus 140 ~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 140 SSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp TTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 1 24889999999999999999999999999999986553 6789999 999999999999999999999987777765
Q ss_pred HHH
Q 003081 228 SLT 230 (850)
Q Consensus 228 ~~~ 230 (850)
+..
T Consensus 220 ~~v 222 (249)
T 2qk1_A 220 KIF 222 (249)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 48
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.17 E-value=3.6e-08 Score=114.35 Aligned_cols=354 Identities=10% Similarity=0.048 Sum_probs=217.2
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHccC---CchhhhHHHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHHHHHHhh
Q 003081 159 FDDLLIQSGSRLWRSREASCLSLADIIQGR---KFDQVGKHLRRIWTAAFRAMDD-IKETVRTAGDKLCRSVTSLTIRLC 234 (850)
Q Consensus 159 l~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~---~~~~l~~~L~~i~~~l~~~ldD-~k~~VR~aA~~~~~~L~~~~~r~~ 234 (850)
++++++++.+.+..++..|+.++..++... +.+.+... .++|.+.++|+. ..+.++..|..++..++.
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~--G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias------ 130 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRA--GLIPKFVSFLGKTDCSPIQFESAWALTNIAS------ 130 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHT--THHHHHHHHTTCTTCHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHC--CCHHHHHHHHCCCCCHHHHHHHHHHHHHHhc------
Confidence 677888999999999999999999998632 22333332 468888888864 447788766544433321
Q ss_pred hcccCcchhHHhHHH-HhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHH
Q 003081 235 DVTLTEISDARQSMD-IVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIE 313 (850)
Q Consensus 235 ~~~~~~~~~~~~~l~-~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~ 313 (850)
+++.....+++ -.+|.|+. -|.+++.++|..++.+|++|+..... .+..+
T Consensus 131 ----~~~e~~~~vv~~GaIp~Lv~-lL~s~~~~v~e~A~~aL~nLa~d~~~-~r~~v----------------------- 181 (510)
T 3ul1_B 131 ----GTSEQTKAVVDGGAIPAFIS-LLASPHAHISEQAVWALGNIAGDGSA-FRDLV----------------------- 181 (510)
T ss_dssp ----SCHHHHHHHHHTTHHHHHHH-HTTCSCHHHHHHHHHHHHHHHTTCHH-HHHHH-----------------------
T ss_pred ----CCHHHHHHHHHCCCHHHHHH-HHcCCCHHHHHHHHHHHHHHHhCCHH-HHHHH-----------------------
Confidence 11112223333 36788773 46678899999999999999732110 00000
Q ss_pred HhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCC----CchHhhHHHHHHHHHHHh
Q 003081 314 LHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIG----LNTRVGVASFISLLVQKI 389 (850)
Q Consensus 314 ~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~----~~tr~~a~~~l~~L~~~~ 389 (850)
.. ...+|.|...++.... ......++..+..++...
T Consensus 182 --------------------~~--------------------~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~ 221 (510)
T 3ul1_B 182 --------------------IK--------------------HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 221 (510)
T ss_dssp --------------------HH--------------------TTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred --------------------HH--------------------cCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcc
Confidence 00 0012222223322100 001112333333333211
Q ss_pred ccccc--chHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHH--H--HHHHHHHHHhhc-CCchhhHHHHHHHH
Q 003081 390 GMDIK--PYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQ--A--QKLIEETAALHI-DDKNSQISCAILLK 462 (850)
Q Consensus 390 ~~~~~--py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~--v--~~li~~l~~~~~-~d~~~r~~~~~~l~ 462 (850)
.... .....+++.|...+ .+.++.|+..++.+++++.....+.. + ...++.+.+++. .+...+..+..+++
T Consensus 222 -~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~ 299 (510)
T 3ul1_B 222 -NPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG 299 (510)
T ss_dssp -SSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred -cchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHH
Confidence 1111 22356788888888 68889999999999999986543221 1 124666777665 45566777888888
Q ss_pred HHHhhchhhhhhh-HhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhH-HHHHHHHHHhhcCCCHHHHHHHH
Q 003081 463 SYSSVASDVLSGY-HAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYL-GEIVSLICEGIASSSWSSKRKSA 540 (850)
Q Consensus 463 al~~~~~~~f~~~-~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl-~eIl~ll~~~L~d~s~~vr~~aa 540 (850)
.++......-... ...++|.+.....++++.++.....++..++.+......... ..+++.+...+.+.++.+|..|+
T Consensus 300 nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa 379 (510)
T 3ul1_B 300 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 379 (510)
T ss_dssp HHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred HhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHH
Confidence 8765443322221 123455554445667788888877888777776544333222 34788888999999999999999
Q ss_pred HHHHHHHHHhCcchhhhH--HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhc
Q 003081 541 KAICKLGEILGESLSNYH--HVLLESIMKEVPGRLWEGKDALLYAIGSISTSC 591 (850)
Q Consensus 541 ~alg~la~~~g~~l~~~l--~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~ 591 (850)
.+|+.++......-..++ ...+|.|.+-|...++.....++++|..++...
T Consensus 380 ~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~ 432 (510)
T 3ul1_B 380 WAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 432 (510)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 999999875432221221 345778888888888889999999999887644
No 49
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.11 E-value=1.2e-07 Score=110.49 Aligned_cols=357 Identities=10% Similarity=0.056 Sum_probs=216.7
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHccCC---chhhhHHHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHHHHHh
Q 003081 158 IFDDLLIQSGSRLWRSREASCLSLADIIQGRK---FDQVGKHLRRIWTAAFRAMD-DIKETVRTAGDKLCRSVTSLTIRL 233 (850)
Q Consensus 158 Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~---~~~l~~~L~~i~~~l~~~ld-D~k~~VR~aA~~~~~~L~~~~~r~ 233 (850)
-++.+++++.+.+..++..|+.++..++.... .+.+.. ..++|.+.+.+. +..+.++..|..++..++.
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~--~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~----- 149 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIR--AGLIPKFVSFLGKTDCSPIQFESAWALTNIAS----- 149 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHH--TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHH--CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHc-----
Confidence 36778888989899999999999999886422 223322 257788888885 4457787766544443321
Q ss_pred hhcccCcchhHHhHHH-HhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccch--HHHHHHHHHhccccchhhhh
Q 003081 234 CDVTLTEISDARQSMD-IVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHL--SDLVSCMLESLSSLEDQGLN 310 (850)
Q Consensus 234 ~~~~~~~~~~~~~~l~-~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~l--p~Lvp~LL~~Ls~~ep~~~n 310 (850)
+++.....++. -.+|.|+. -+.+++.++|..|+.+|++|+..... .+..+ ...++.|+..+.......
T Consensus 150 -----~~~~~~~~vv~~Gaip~Lv~-LL~s~~~~v~e~A~~aL~nLa~~~~~-~r~~i~~~g~i~~Ll~lL~~~~~~~-- 220 (529)
T 3tpo_A 150 -----GTSEQTKAVVDGGAIPAFIS-LLASPHAHISEQAVWALGNIAGAGSA-FRDLVIKHGAIDPLLALLAVPDLST-- 220 (529)
T ss_dssp -----SCHHHHHHHHHTTHHHHHHH-HTTCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTCHHHHHHTTCSSCGGG--
T ss_pred -----CCHHHHHHHHHCCCHHHHHH-HHcCCCHHHHHHHHHHHHHHhccCHH-HHHHHHHcCCcHHHHHHHhccchhH--
Confidence 11111122222 46787773 35677899999999999999732110 00000 011222222222110000
Q ss_pred HHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhc
Q 003081 311 YIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIG 390 (850)
Q Consensus 311 yl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~ 390 (850)
........++..+..++...
T Consensus 221 -----------------------------------------------------------~~~~~~~~a~~~L~nl~~~~- 240 (529)
T 3tpo_A 221 -----------------------------------------------------------LACGYLRNLTWTLSNLCRNK- 240 (529)
T ss_dssp -----------------------------------------------------------SCHHHHHHHHHHHHHHHCCC-
T ss_pred -----------------------------------------------------------hHHHHHHHHHHHHHHHHhcc-
Confidence 00001112333333333211
Q ss_pred cccc--chHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHH--H--HHHHHHHHHhhc-CCchhhHHHHHHHHH
Q 003081 391 MDIK--PYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQ--A--QKLIEETAALHI-DDKNSQISCAILLKS 463 (850)
Q Consensus 391 ~~~~--py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~--v--~~li~~l~~~~~-~d~~~r~~~~~~l~a 463 (850)
.... .....+++.|...+ .+.++.|+..++.+++++.....+.. + ...++.+.+++. .+...+..+..+++.
T Consensus 241 ~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~n 319 (529)
T 3tpo_A 241 NPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 319 (529)
T ss_dssp TTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred cchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHH
Confidence 1111 12356788888888 67889999999999999986543221 1 134566777665 455667778888888
Q ss_pred HHhhchhhhhhh-HhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhH-HHHHHHHHHhhcCCCHHHHHHHHH
Q 003081 464 YSSVASDVLSGY-HAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYL-GEIVSLICEGIASSSWSSKRKSAK 541 (850)
Q Consensus 464 l~~~~~~~f~~~-~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl-~eIl~ll~~~L~d~s~~vr~~aa~ 541 (850)
++.......... ...++|.+.....++++.++.....++..++.+......... ..+++.+...+.+.++.+|..|+.
T Consensus 320 l~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~ 399 (529)
T 3tpo_A 320 IVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAW 399 (529)
T ss_dssp HTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHH
Confidence 865443322221 233566665556667788888877777777766544333222 347888888999999999999999
Q ss_pred HHHHHHHHhCcchhhhH--HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhc
Q 003081 542 AICKLGEILGESLSNYH--HVLLESIMKEVPGRLWEGKDALLYAIGSISTSC 591 (850)
Q Consensus 542 alg~la~~~g~~l~~~l--~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~ 591 (850)
+|+.++......-..++ ..++|.|.+-|...++.....++++|..+....
T Consensus 400 aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~ 451 (529)
T 3tpo_A 400 AITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 451 (529)
T ss_dssp HHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 99999875432221222 235778888888888889999999999887543
No 50
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.08 E-value=3e-09 Score=129.57 Aligned_cols=297 Identities=12% Similarity=0.150 Sum_probs=216.2
Q ss_pred hHHHHHHhhcCCCCHhHHHHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCC-chhh
Q 003081 116 LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPK-RTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRK-FDQV 193 (850)
Q Consensus 116 ~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~-~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~-~~~l 193 (850)
.++.++. ..| ....+.++..+...+..+.. ..+. ..++..|.+.+.++..- ++||.++..|.+..+ .+.+
T Consensus 18 ~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~ 89 (986)
T 2iw3_A 18 ELFQKLS--VAT-ADNRHEIASEVASFLNGNIIEHDVP---EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSV 89 (986)
T ss_dssp HHHHHHT--TCC-TTTHHHHHHHHHHHHTSSCSSSSCC---HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTT
T ss_pred HHHhhcc--ccc-hhHHHHHHHHHHHHHhccccccccc---hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCc
Confidence 3555553 233 44557777777766654311 1122 26778888888876433 999999999996332 2346
Q ss_pred hHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCC-chhHHHHHHH
Q 003081 194 GKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILS-KVDSISKASI 272 (850)
Q Consensus 194 ~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s-~~~evr~~a~ 272 (850)
++|+-.+++.++..+.|....||+||..++.++.+. +.+. .+..++|.|+. ++.+ ..|..+..++
T Consensus 90 e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~----~~~~---------a~~~~~~~~~~-~~~~~~kw~~k~~~l 155 (986)
T 2iw3_A 90 EPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNA----VNPV---------AIKALLPHLTN-AIVETNKWQEKIAIL 155 (986)
T ss_dssp HHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHH----SCGG---------GHHHHHHHHHH-HHHHCCCHHHHHHHH
T ss_pred ccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh----CCHH---------HHHHHHHHHHH-HhccccchHHHHHHH
Confidence 999999999999999999999999999888887543 2322 34777888873 4543 3599999999
Q ss_pred HHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcCh
Q 003081 273 GVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDT 352 (850)
Q Consensus 273 ~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~ 352 (850)
.++..+++.+...+.-++|+++|.+.+.+.+..|++.. . -.+++..++..++.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~-----------------~----------~~~~~~~~~~~~~n 208 (986)
T 2iw3_A 156 AAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKA-----------------A----------ATAAMTKATETVDN 208 (986)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHH-----------------H----------HHHHHHHHGGGCCC
T ss_pred HHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHH-----------------H----------HHHHHHHHHhcCCC
Confidence 99999999988999999999999999999998887631 0 12467778888888
Q ss_pred hhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhC
Q 003081 353 ESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDI-KPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYA 431 (850)
Q Consensus 353 ~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~-~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~ 431 (850)
..+..++|.|++.+.++.. --.|.+.|+ ++.+-..+ .|-+.-+.+.|.++| .++..++.+..+..++.+++..
T Consensus 209 ~d~~~~~~~~~~~~~~p~~---~~~~~~~l~--~~tfv~~v~~~~l~~~~p~l~r~l-~~~~~~~~r~~~~~~~n~~~lv 282 (986)
T 2iw3_A 209 KDIERFIPSLIQCIADPTE---VPETVHLLG--ATTFVAEVTPATLSIMVPLLSRGL-NERETGIKRKSAVIIDNMCKLV 282 (986)
T ss_dssp TTTGGGHHHHHHHHHCTTH---HHHHHHHHT--TCCCCSCCCHHHHHHHHHHHHHHH-TSSSHHHHHHHHHHHHHHHTTC
T ss_pred cchhhhHHHHHHHhcChhh---hHHHHHHhh--cCeeEeeecchhHHHHHHHHHhhh-ccCcchhheeeEEEEcchhhhc
Confidence 8899999999999987521 224555553 12222333 266777888899999 7899999999999999999987
Q ss_pred CHH-HHHHHHHHHHHh----hc--CCchhhHHHHHHHHHHHhh
Q 003081 432 TPS-QAQKLIEETAAL----HI--DDKNSQISCAILLKSYSSV 467 (850)
Q Consensus 432 ~~~-~v~~li~~l~~~----~~--~d~~~r~~~~~~l~al~~~ 467 (850)
.++ .+..|+++|... +. .|++.|..+..++..+.+.
T Consensus 283 ~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 283 EDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp CCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence 655 456666665543 32 5888898888777777544
No 51
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.06 E-value=5.1e-07 Score=112.19 Aligned_cols=402 Identities=9% Similarity=0.134 Sum_probs=220.5
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCC--CChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhc
Q 003081 132 VQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGS--RLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMD 209 (850)
Q Consensus 132 VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~--~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ld 209 (850)
.++.|.++...+..-. .++-+..+++.+-+.+++ .+|..+++.|+|+|.+......+.-.++++++++.++.+.+
T Consensus 455 ly~~mrd~L~~lt~l~---~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e 531 (1073)
T 3gjx_A 455 LYKNMRETLVYLTHLD---YVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCE 531 (1073)
T ss_dssp HHHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccc
Confidence 3445655554443100 122334455555544443 46999999999999998554444456899999999998886
Q ss_pred cC-----cHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCc
Q 003081 210 DI-----KETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGI 284 (850)
Q Consensus 210 D~-----k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~ 284 (850)
.. |..||....-++....+|+. ...+++..++..|+ .++.++.+.|+..|+.++..|+..|+.
T Consensus 532 ~~~~kd~k~~vas~i~~vlgrY~~wl~-----------~h~~~L~~vl~~L~-~~m~~~~~~vq~aA~~af~~i~~~C~~ 599 (1073)
T 3gjx_A 532 QKRGKDNKAIIASNIMYIVGQYPRFLR-----------AHWKFLKTVVNKLF-EFMHETHDGVQDMACDTFIKIAQKCRR 599 (1073)
T ss_dssp HSCSHHHHHHHHHHHHHHHHHCHHHHH-----------HCHHHHHHHHHHHH-HHTTCCSTTHHHHHHHHHHHHHHHTGG
T ss_pred cccccchhHHHHHHHHHHHhhhHHHHH-----------hCHHHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 54 44455443223333344542 12357888888887 467778899999999999999999987
Q ss_pred cc--------ccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChh---
Q 003081 285 AI--------RPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTE--- 353 (850)
Q Consensus 285 ~l--------~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~--- 353 (850)
.| .||+.+|+..+-......+++.... +++++..++.....+
T Consensus 600 ~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~---------------------------lyeav~~vi~~~p~~~~~ 652 (1073)
T 3gjx_A 600 HFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHT---------------------------FYEAVGYMIGAQTDQTVQ 652 (1073)
T ss_dssp GGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHH---------------------------HHHHHHHHHTTCCCHHHH
T ss_pred HHhhccccccchHHHHHHHHHHHHHHhcCHHHHHH---------------------------HHHHHHHHHHhCCCcchH
Confidence 65 5788888888877777665554322 233444444333221
Q ss_pred --hHhhHHHHHHHHHhcc-------CC---Cch--Hh--hHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHH
Q 003081 354 --SLDQLVPHLARLVRSG-------IG---LNT--RV--GVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAK 417 (850)
Q Consensus 354 --~l~~lvp~L~~~lk~~-------~~---~~t--r~--~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr 417 (850)
.+..++|...+..+.- .+ .+. |. ...++....+...|..|.|++..+...++..
T Consensus 653 ~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~~~l~~---------- 722 (1073)
T 3gjx_A 653 EHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNV---------- 722 (1073)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchhHHHHHHHHHHHHHHH----------
Confidence 1223333322221110 00 000 00 1111222233334444444444443333322
Q ss_pred HHHHHHHHHHhhhCCHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhchh--------hhhhhHhhHhHHH--HHHh
Q 003081 418 RAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASD--------VLSGYHAVIVPVI--FISR 487 (850)
Q Consensus 418 ~~~a~alg~L~~~~~~~~v~~li~~l~~~~~~d~~~r~~~~~~l~al~~~~~~--------~f~~~~~~vlP~l--~~~~ 487 (850)
| |.....+-.+++..... .++.....++-++ +++.
T Consensus 723 -----------------------------y------~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~ 767 (1073)
T 3gjx_A 723 -----------------------------Y------KCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSR 767 (1073)
T ss_dssp -----------------------------H------HHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -----------------------------H------HHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 00000000111100000 0001111122111 1111
Q ss_pred cCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCCCHHHHHHHH-HHHHHHHHHhCcchhhhHHHHHHHHH
Q 003081 488 FEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSA-KAICKLGEILGESLSNYHHVLLESIM 566 (850)
Q Consensus 488 ~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa-~alg~la~~~g~~l~~~l~~llp~L~ 566 (850)
.++.+.+ ...+++.+++.+..--....+..|.+.. .++..++..+|..+.+.++.++..+.
T Consensus 768 ~~~~~~v------------------~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf 829 (1073)
T 3gjx_A 768 SNDPQMV------------------AENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVF 829 (1073)
T ss_dssp CSCHHHH------------------HHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHH
T ss_pred CCCHHHH------------------HHHhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 1111111 1223344444433322223333444443 56677778899888888888777654
Q ss_pred H----hcC-C-C-ChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCC
Q 003081 567 K----EVP-G-R-LWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRD 638 (850)
Q Consensus 567 ~----~L~-~-r-~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~~ 638 (850)
+ .+. + . -++.|...++-+..+...|-..+-.-.++....++..++|.++.....+-..++..+-++++.+..
T Consensus 830 ~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~ 908 (1073)
T 3gjx_A 830 ECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQ 908 (1073)
T ss_dssp HHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhc
Confidence 2 332 2 2 378999999999999998876654322334567889999999999999999999999999988753
No 52
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.05 E-value=2.5e-07 Score=109.75 Aligned_cols=405 Identities=11% Similarity=0.046 Sum_probs=242.5
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcc
Q 003081 158 IFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVT 237 (850)
Q Consensus 158 Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~ 237 (850)
.+.++++.+.+++...|..+-.++..+..+.+ + .+.-+...+.+-+.|.++.+|..|.. +++.+.
T Consensus 75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~-e----~~~L~iN~l~kDl~~~n~~ir~lALr---~L~~i~------- 139 (621)
T 2vgl_A 75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSNS-E----LIRLINNAIKNDLASRNPTFMGLALH---CIANVG------- 139 (621)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCH-H----HHHHHHHHHHHHHHSCCHHHHHHHHH---HHHHHC-------
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHccCCc-H----HHHHHHHHHHHhcCCCCHHHHHHHHH---HhhccC-------
Confidence 45666778889999999999999999886643 1 22233445556678999999998764 444321
Q ss_pred cCcchhHHhHHHHhHHHHhhccC--CCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHh
Q 003081 238 LTEISDARQSMDIVLPFLLAEGI--LSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELH 315 (850)
Q Consensus 238 ~~~~~~~~~~l~~lLP~Ll~~gL--~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~ 315 (850)
..++.+.++|.+. +++ .+.++-||+.|+.++.++.+..+..+.+ +.+++.+.+.|.+.+|.+..-..
T Consensus 140 ------~~e~~~~l~~~v~-~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~a~-- 208 (621)
T 2vgl_A 140 ------SREMAEAFAGEIP-KILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM--GDWTSRVVHLLNDQHLGVVTAAT-- 208 (621)
T ss_dssp ------CHHHHHHHTTHHH-HHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC--CSCHHHHHHHTTCSCHHHHHHHH--
T ss_pred ------CHHHHHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc--hhHHHHHHHHhCCCCccHHHHHH--
Confidence 1236677888876 467 7788999999999999999976655542 45677777778776665432110
Q ss_pred hhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHH----HHHhcc-C--------C--Cc-hHhhHH
Q 003081 316 AANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLA----RLVRSG-I--------G--LN-TRVGVA 379 (850)
Q Consensus 316 a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~----~~lk~~-~--------~--~~-tr~~a~ 379 (850)
.++..+... +.+.+..++|.+. +.+... . + .+ .++...
T Consensus 209 -------------------------~~l~~i~~~-~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il 262 (621)
T 2vgl_A 209 -------------------------SLITTLAQK-NPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLL 262 (621)
T ss_dssp -------------------------HHHHHHHHH-CHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHH
T ss_pred -------------------------HHHHHHHHh-ChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHH
Confidence 011111111 1111223344333 333221 0 0 01 122222
Q ss_pred HHHHHHHHHhcccccchHHHHHHHHHHhhh--------hcCcH--HHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhc-
Q 003081 380 SFISLLVQKIGMDIKPYTSMLLRLLFPVVK--------EEKSA--AAKRAFASACASVLKYATPSQAQKLIEETAALHI- 448 (850)
Q Consensus 380 ~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~--------~D~n~--~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~- 448 (850)
+++..++...........-.++..+++.+. +.+|. +|.-+++.++-++- ..++.+...+..+..++.
T Consensus 263 ~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~--~~~~~~~~~~~~L~~~L~~ 340 (621)
T 2vgl_A 263 RLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD--SEPNLLVRACNQLGQFLQH 340 (621)
T ss_dssp HHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhcC
Confidence 222211100000111122223333443220 12343 55555555555543 234445566667776664
Q ss_pred CCchhhHHHHHHHHHHHhhch--hhhhhhHhhHhHHHHHHhc-CCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHH
Q 003081 449 DDKNSQISCAILLKSYSSVAS--DVLSGYHAVIVPVIFISRF-EDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLIC 525 (850)
Q Consensus 449 ~d~~~r~~~~~~l~al~~~~~--~~f~~~~~~vlP~l~~~~~-d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~ 525 (850)
.|++.|..+...+..+....+ +.|..|...++ .... |+|.++|....+++-.++.. . .++.|+..+.
T Consensus 341 ~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~----~~L~~d~d~~Ir~~aL~lL~~l~~~--~----Nv~~Iv~eL~ 410 (621)
T 2vgl_A 341 RETNLRYLALESMCTLASSEFSHEAVKTHIETVI----NALKTERDVSVRQRAVDLLYAMCDR--S----NAQQIVAEML 410 (621)
T ss_dssp SCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHH----HHHTTCCCHHHHHHHHHHHHHHCCH--H----HHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHH----HHhccCCCHhHHHHHHHHHHHHcCh--h----hHHHHHHHHH
Confidence 577889888888888877654 44555544444 4445 78889998888888777653 2 3455666666
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCchHH
Q 003081 526 EGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFA 605 (850)
Q Consensus 526 ~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~ 605 (850)
..+.+.+.+.|+.+..+++.+|..+......+++.++..+...-. ..+..++..+..++.... .....
T Consensus 411 ~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~----~v~~ev~~~l~~ii~~~~--------~~~~~ 478 (621)
T 2vgl_A 411 SYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGD----YVSEEVWYRVIQIVINRD--------DVQGY 478 (621)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGG----GSCSHHHHHHHHHHGGGC--------SCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcc----cchHHHHHHHHHHHhCCh--------hHHHH
Confidence 667777899999999999999999888888788888887765432 134455666666665332 23334
Q ss_pred HHHHHHHHHhhc--CHHHHHHHHHHHHHHHHHcCC
Q 003081 606 IVDMVSSACRKK--IKKYREAAFSCLEQVIKAFRD 638 (850)
Q Consensus 606 i~~~l~~e~~r~--~~~~R~~Al~~Lg~l~~~~~~ 638 (850)
.+..+...+.+. ...+-+.|+|++|++.....+
T Consensus 479 ~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~ 513 (621)
T 2vgl_A 479 AAKTVFEALQAPACHENLVKVGGYILGEFGNLIAG 513 (621)
T ss_dssp HHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHS
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcc
Confidence 444455444432 346667788999999887754
No 53
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.03 E-value=9.6e-08 Score=111.23 Aligned_cols=316 Identities=15% Similarity=0.101 Sum_probs=200.1
Q ss_pred HHHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhchhh-hhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHH
Q 003081 75 LIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHL-RLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDE 153 (850)
Q Consensus 75 lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L-~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~ 153 (850)
.+++|+.+..++....-+.-|+.+|.+|+.+..+.....+ ...+|.|...+.+|++.||..+..++..++.+.+...+.
T Consensus 120 ~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~ 199 (529)
T 3tpo_A 120 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDL 199 (529)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHH
Confidence 6788999886654456677889999999876544332222 258999999999999999999999888888775432222
Q ss_pred HHH-HHHHHHHHhhCCCCh-----hHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Q 003081 154 HLD-LIFDDLLIQSGSRLW-----RSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVT 227 (850)
Q Consensus 154 ~~~-~Il~~Ll~~l~~~~w-----RVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~ 227 (850)
..+ -.++.|+..+.+.+. .+...+++++.++..+.....-......+++.+.+++.+..+.|+..|. +.|+
T Consensus 200 i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~---~aL~ 276 (529)
T 3tpo_A 200 VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSC---WAIS 276 (529)
T ss_dssp HHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHH---HHHH
T ss_pred HHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHH---HHHH
Confidence 222 256677777765443 3567788999999987654443445678889999999999899988764 4443
Q ss_pred HHHHHhhhcccCcchhHHhH-HHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccch
Q 003081 228 SLTIRLCDVTLTEISDARQS-MDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLED 306 (850)
Q Consensus 228 ~~~~r~~~~~~~~~~~~~~~-l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep 306 (850)
..+ +. +......+ -..++|.|+. -+.++...++..++.++++|+...... ...+
T Consensus 277 ~l~----~~---~~~~~~~v~~~g~i~~Lv~-lL~~~~~~v~~~a~~aL~nl~~~~~~~--------~~~i--------- 331 (529)
T 3tpo_A 277 YLT----DG---PNERIEMVVKKGVVPQLVK-LLGATELPIVTPALRAIGNIVTGTDEQ--------TQKV--------- 331 (529)
T ss_dssp HHH----SS---CHHHHHHHHTTTCHHHHHH-HHTCSCHHHHHHHHHHHHHHTTSCHHH--------HHHH---------
T ss_pred Hhh----hh---hhhhHHHHHhccchHHHHH-HhcCCChhHHHHHHHHHHHHHccchHH--------HHHH---------
Confidence 322 10 00111111 1235666653 245567889999999998885211000 0000
Q ss_pred hhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHH
Q 003081 307 QGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLV 386 (850)
Q Consensus 307 ~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~ 386 (850)
+. ...+|.|..++++. ....|..++.+|..++
T Consensus 332 ----------------------------------------~~-------~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~ 363 (529)
T 3tpo_A 332 ----------------------------------------ID-------AGALAVFPSLLTNP-KTNIQKEATWTMSNIT 363 (529)
T ss_dssp ----------------------------------------HH-------TTGGGGHHHHTTCS-SHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------hh-------cccHHHHHHHHcCC-CHHHHHHHHHHHHHHh
Confidence 00 01223334444432 3344556677776665
Q ss_pred HHhcccccchHH-HHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHHHHH-----HHHHHHhhc-CCchhhHHHHH
Q 003081 387 QKIGMDIKPYTS-MLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKL-----IEETAALHI-DDKNSQISCAI 459 (850)
Q Consensus 387 ~~~~~~~~py~~-~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~~l-----i~~l~~~~~-~d~~~r~~~~~ 459 (850)
...........+ .+++.++..+ .+.+..|++.++.+++.++.....+.+..+ ++.+.+++. .|+..+..+..
T Consensus 364 ~~~~~~~~~v~~~g~i~~Lv~lL-~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~ 442 (529)
T 3tpo_A 364 AGRQDQIQQVVNHGLVPFLVGVL-SKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILD 442 (529)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHH
T ss_pred cccHHHHHHHHhcCcHHHHHHHh-cCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHH
Confidence 432222221222 4677888888 678899999999999999887777655443 566777775 56666777777
Q ss_pred HHHHHHhh
Q 003081 460 LLKSYSSV 467 (850)
Q Consensus 460 ~l~al~~~ 467 (850)
++..|.+.
T Consensus 443 aL~nil~~ 450 (529)
T 3tpo_A 443 AISNIFQA 450 (529)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776554
No 54
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.01 E-value=7.7e-08 Score=111.55 Aligned_cols=317 Identities=14% Similarity=0.090 Sum_probs=196.5
Q ss_pred HHHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhchhhh-hHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHH
Q 003081 75 LIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLR-LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDE 153 (850)
Q Consensus 75 lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L~-~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~ 153 (850)
.|++|+.+..++....-+..|+.+|++|+++..+.-...+. ..+|.|.+++.+|++.||+.+..+..-++.|.+...+.
T Consensus 101 ~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~ 180 (510)
T 3ul1_B 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDL 180 (510)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 58899998865543455678999999998766443333232 47999999999999999999998888888775432222
Q ss_pred HHH-HHHHHHHHhhCCCC-----hhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Q 003081 154 HLD-LIFDDLLIQSGSRL-----WRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVT 227 (850)
Q Consensus 154 ~~~-~Il~~Ll~~l~~~~-----wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~ 227 (850)
..+ -.++.|+..+.+.+ ..+...+++++.++..+.....-......+++.+.+++.+..+.|+..|..++..++
T Consensus 181 v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~ 260 (510)
T 3ul1_B 181 VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLT 260 (510)
T ss_dssp HHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 222 24566666665543 345677889999999876544444456788899999999999999887754444332
Q ss_pred HHHHHhhhcccCcchhHHhH-HHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccch
Q 003081 228 SLTIRLCDVTLTEISDARQS-MDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLED 306 (850)
Q Consensus 228 ~~~~r~~~~~~~~~~~~~~~-l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep 306 (850)
+. +......+ -..++|.|+. -+.+....++..++.++++++..... ....+++
T Consensus 261 -------~~---~~~~~~~i~~~g~i~~Lv~-lL~~~~~~v~~~al~aL~nl~~~~~~--------~~~~i~~------- 314 (510)
T 3ul1_B 261 -------DG---PNERIEMVVKKGVVPQLVK-LLGATELPIVTPALRAIGNIVTGTDE--------QTQKVID------- 314 (510)
T ss_dssp -------SS---CHHHHHHHHTTTCHHHHHH-HHTCSCHHHHHHHHHHHHHHTTSCHH--------HHHHHHH-------
T ss_pred -------hc---hhhhHHHHHhcccchhhhh-hhcCCChhhhhHHHHHHHHhhcCCHH--------HHHHHhh-------
Confidence 10 00111111 1235666653 24456788999999999988532110 0000000
Q ss_pred hhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHH
Q 003081 307 QGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLV 386 (850)
Q Consensus 307 ~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~ 386 (850)
...+|.|..++++. ....|..++.++..++
T Consensus 315 -------------------------------------------------~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~ 344 (510)
T 3ul1_B 315 -------------------------------------------------AGALAVFPSLLTNP-KTNIQKEATWTMSNIT 344 (510)
T ss_dssp -------------------------------------------------TTGGGGCC-CTTCS-SHHHHHHHHHHHHHHT
T ss_pred -------------------------------------------------ccchHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 00112222222222 2234455666665554
Q ss_pred HHhcccccchH-HHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHHHHH-----HHHHHHhhc-CCchhhHHHHH
Q 003081 387 QKIGMDIKPYT-SMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKL-----IEETAALHI-DDKNSQISCAI 459 (850)
Q Consensus 387 ~~~~~~~~py~-~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~~l-----i~~l~~~~~-~d~~~r~~~~~ 459 (850)
........... ..+++.++..+ .+.+..|++.++.+++.++.....+.+..+ ++.+.+++. .|+..+..+..
T Consensus 345 a~~~~~~~~v~~~g~i~~Lv~lL-~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~ 423 (510)
T 3ul1_B 345 AGRQDQIQQVVNHGLVPFLVGVL-SKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILD 423 (510)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHH
T ss_pred cCcHHHHHHHHhcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHH
Confidence 32221111111 24677888888 678899999999999999988777665443 566777775 46666777777
Q ss_pred HHHHHHhhc
Q 003081 460 LLKSYSSVA 468 (850)
Q Consensus 460 ~l~al~~~~ 468 (850)
++..|.+..
T Consensus 424 aL~nil~~~ 432 (510)
T 3ul1_B 424 AISNIFQAA 432 (510)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776543
No 55
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.99 E-value=2.7e-08 Score=105.49 Aligned_cols=252 Identities=14% Similarity=0.047 Sum_probs=161.5
Q ss_pred HHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHH
Q 003081 76 IYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHL 155 (850)
Q Consensus 76 v~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~ 155 (850)
+..++.+..+. .+..|..|+.+|+.+.. +..+|.|..++.||++.||..+..+...+...+. . +
T Consensus 25 i~~L~~~L~~~-~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~-~----~ 88 (280)
T 1oyz_A 25 DDELFRLLDDH-NSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK-C----E 88 (280)
T ss_dssp HHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT-T----H
T ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc-c----c
Confidence 45555555544 47788889988887642 2367888888899999999999988888764322 2 3
Q ss_pred HHHHHHHHH-hhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhh
Q 003081 156 DLIFDDLLI-QSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLC 234 (850)
Q Consensus 156 ~~Il~~Ll~-~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~ 234 (850)
+.+++.|.. .++|++|.||..++.||+.+-.+.+ .+-+.+++.+...++|..+.||.+|..++..++
T Consensus 89 ~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~-----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~------- 156 (280)
T 1oyz_A 89 DNVFNILNNMALNDKSACVRATAIESTAQRCKKNP-----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIN------- 156 (280)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG-----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC-----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC-------
Confidence 345555542 4578899999999999999864332 234567788888899999999998764433221
Q ss_pred hcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHH
Q 003081 235 DVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIEL 314 (850)
Q Consensus 235 ~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~ 314 (850)
+ ...+|.|+. .+.++++.||..++.+|+.+. +.-+..+|.|+..+.+.++.+..
T Consensus 157 ~-------------~~~~~~L~~-~l~d~~~~vr~~a~~aL~~~~--------~~~~~~~~~L~~~l~d~~~~vR~---- 210 (280)
T 1oyz_A 157 D-------------KATIPLLIN-LLKDPNGDVRNWAAFAININK--------YDNSDIRDCFVEMLQDKNEEVRI---- 210 (280)
T ss_dssp ---------------CCHHHHHH-HHTCSSHHHHHHHHHHHHHHT--------CCCHHHHHHHHHHTTCSCHHHHH----
T ss_pred C-------------HHHHHHHHH-HHcCCCHHHHHHHHHHHHhhc--------cCcHHHHHHHHHHhcCCCHHHHH----
Confidence 1 113455542 355678899999999998872 23467888899888765443321
Q ss_pred hhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhccccc
Q 003081 315 HAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIK 394 (850)
Q Consensus 315 ~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~ 394 (850)
.++ .++..+ -+ +..+|.|.+.++++ ..|..++..+..+ +.
T Consensus 211 -----------------~A~------~aL~~~---~~----~~~~~~L~~~l~d~---~vr~~a~~aL~~i----~~--- 250 (280)
T 1oyz_A 211 -----------------EAI------IGLSYR---KD----KRVLSVLCDELKKN---TVYDDIIEAAGEL----GD--- 250 (280)
T ss_dssp -----------------HHH------HHHHHT---TC----GGGHHHHHHHHTSS---SCCHHHHHHHHHH----CC---
T ss_pred -----------------HHH------HHHHHh---CC----HhhHHHHHHHhcCc---cHHHHHHHHHHhc----Cc---
Confidence 111 122111 12 34577777777764 2677777777544 22
Q ss_pred chHHHHHHHHHHhhhhcCcHHHHHHHHHHH
Q 003081 395 PYTSMLLRLLFPVVKEEKSAAAKRAFASAC 424 (850)
Q Consensus 395 py~~~lL~~Ll~~l~~D~n~~Vr~~~a~al 424 (850)
+..++.|...+.++.++.+++....++
T Consensus 251 ---~~~~~~L~~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 251 ---KTLLPVLDTMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp ---GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred ---hhhhHHHHHHHhcCCCcHHHHHHHHHh
Confidence 244566666663344555555554444
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.92 E-value=1.1e-08 Score=124.67 Aligned_cols=211 Identities=18% Similarity=0.264 Sum_probs=163.3
Q ss_pred hhHHhhHHHHHHHhh--hhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCC-
Q 003081 93 RGAAFGFSKIAKQAG--DALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSR- 169 (850)
Q Consensus 93 ~gAa~gl~~I~~~~~--~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~- 169 (850)
+||+.+++.|++..+ ..++||+-.++|.++....|..+.||+++.....+++...+ .+-...++|.|+..+.+.
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~ 146 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVN---PVAIKALLPHLTNAIVETN 146 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSC---GGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHhcccc
Confidence 899999999996653 47899999999999999999999999999888888875432 222366777777777543
Q ss_pred ChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH------------HHHhh-hc
Q 003081 170 LWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSL------------TIRLC-DV 236 (850)
Q Consensus 170 ~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~------------~~r~~-~~ 236 (850)
.|..+.+|+..++.|.+.. ++++..++++|+|.+..+|-|.|+.|.++|.+++..+... ++... +|
T Consensus 147 kw~~k~~~l~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p 225 (986)
T 2iw3_A 147 KWQEKIAILAAFSAMVDAA-KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADP 225 (986)
T ss_dssp CHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCT
T ss_pred chHHHHHHHHHHHHHHHHh-HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcCh
Confidence 5999999999999999866 6899999999999999999999999999998776654321 11111 11
Q ss_pred ccC--------c----chhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhc--CcccccchHHHHHHHHHhcc
Q 003081 237 TLT--------E----ISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGA--GIAIRPHLSDLVSCMLESLS 302 (850)
Q Consensus 237 ~~~--------~----~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~--g~~l~P~lp~Lvp~LL~~Ls 302 (850)
... + ..-..+.+..+.|+|. +||......++..++-++.+|+|-. .....||+|.|+|.+-....
T Consensus 226 ~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~-r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~ 304 (986)
T 2iw3_A 226 TEVPETVHLLGATTFVAEVTPATLSIMVPLLS-RGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFA 304 (986)
T ss_dssp THHHHHHHHHTTCCCCSCCCHHHHHHHHHHHH-HHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTT
T ss_pred hhhHHHHHHhhcCeeEeeecchhHHHHHHHHH-hhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhh
Confidence 110 0 0111346888899876 8998878888889999999999964 46689999999999988765
Q ss_pred cc-chhh
Q 003081 303 SL-EDQG 308 (850)
Q Consensus 303 ~~-ep~~ 308 (850)
.. .|++
T Consensus 305 ~~~~pe~ 311 (986)
T 2iw3_A 305 TIADPEA 311 (986)
T ss_dssp TCCSHHH
T ss_pred ccCCHHH
Confidence 43 4544
No 57
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.87 E-value=8.3e-08 Score=99.74 Aligned_cols=221 Identities=12% Similarity=0.112 Sum_probs=146.9
Q ss_pred HHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhchhh-hhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHH
Q 003081 76 IYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHL-RLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEH 154 (850)
Q Consensus 76 v~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L-~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~ 154 (850)
...|..+..++ +...+..|+.+|..++....+..+..+ ...+|.|...+.++++.||..+..++..+..+........
T Consensus 14 ~~~~~~~L~s~-~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 14 LPQMTQQLNSD-DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp HHHHHHHHHSS-CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 44455555444 356778888899877766433322222 2689999999999999999999999999987544433433
Q ss_pred HHH-HHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHh
Q 003081 155 LDL-IFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRL 233 (850)
Q Consensus 155 ~~~-Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~ 233 (850)
++. .++.|+..+.++++.+|+.++.+|+++..+.....-.-.-...++.+.+++++..+.||..|..++..++..
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~---- 168 (252)
T 4db8_A 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG---- 168 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS----
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC----
Confidence 333 789999999999999999999999999876442211111225788888999999999999876555544311
Q ss_pred hhcccCcchhHHhHH-HHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccch-HHHHHHHHHhccccchhh
Q 003081 234 CDVTLTEISDARQSM-DIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHL-SDLVSCMLESLSSLEDQG 308 (850)
Q Consensus 234 ~~~~~~~~~~~~~~l-~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~l-p~Lvp~LL~~Ls~~ep~~ 308 (850)
++.....++ ..++|.|+. -+.++++++|..++.+|.+++........... ..++|.|++.+.+.++.+
T Consensus 169 ------~~~~~~~~~~~~~i~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v 238 (252)
T 4db8_A 169 ------GNEQIQAVIDAGALPALVQ-LLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 238 (252)
T ss_dssp ------CHHHHHHHHHTTCHHHHHH-GGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHH
T ss_pred ------ChHHHHHHHHCCCHHHHHH-HHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHH
Confidence 001111111 346777763 34566789999999999999853322211112 136788888887655443
No 58
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=98.84 E-value=7e-07 Score=110.94 Aligned_cols=427 Identities=13% Similarity=0.135 Sum_probs=233.0
Q ss_pred CccchHH---HHHHHhhhcCCchHHHHHHHHh----cc-chhhhhhhhHHhhHHHHHHHhhh-hhchhhhhHHHHHHhhc
Q 003081 55 GKLSTYK---ELCNLANEMGQPDLIYKFMDLA----NY-QVSLNSKRGAAFGFSKIAKQAGD-ALKPHLRLLIPKLVRFQ 125 (850)
Q Consensus 55 ~~~styk---~l~~lA~~~g~p~lv~~fm~la----~~-~~~w~sr~gAa~gl~~I~~~~~~-~l~p~L~~lvp~L~r~~ 125 (850)
|+++-|| +.+...+.++..+....+++.. +. ...|..++++.|++|+|.....+ .-+++|++++|.|....
T Consensus 451 ~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~ 530 (1073)
T 3gjx_A 451 DSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLC 530 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhccc
Confidence 4555665 4444445666555444444432 22 23499999999999999832222 33478999999998877
Q ss_pred CCCC-----HhHHHHHHHHHHHhccCChHHH---HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCch------
Q 003081 126 YDPD-----KNVQDAMAHIWKSLVADPKRTI---DEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFD------ 191 (850)
Q Consensus 126 ~Dp~-----~~VR~a~~~iw~~Lv~d~~~~i---~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~------ 191 (850)
..|. +.|+...+=+.+. .++-+ .++++.++..|+..+.+++.+|+++||.||..+.+.+...
T Consensus 531 e~~~~kd~k~~vas~i~~vlgr----Y~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~ 606 (1073)
T 3gjx_A 531 EQKRGKDNKAIIASNIMYIVGQ----YPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQV 606 (1073)
T ss_dssp HHSCSHHHHHHHHHHHHHHHHH----CHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCT
T ss_pred ccccccchhHHHHHHHHHHHhh----hHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 6553 3444433322222 22332 4578999999999999999999999999999999865432
Q ss_pred -hhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhc--cCC-------
Q 003081 192 -QVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAE--GIL------- 261 (850)
Q Consensus 192 -~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~--gL~------- 261 (850)
+..||+.+|+..+.....+..+. ....+..+++.+.- .. +....-.+++..++|.+.++ .+.
T Consensus 607 ~e~~p~i~~il~~~~~~~~~l~~~---~~~~lyeav~~vi~-~~----p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~ 678 (1073)
T 3gjx_A 607 GEVMPFIDEILNNINTIICDLQPQ---QVHTFYEAVGYMIG-AQ----TDQTVQEHLIEKYMLLPNQVWDSIIQQATKNV 678 (1073)
T ss_dssp TCSSCHHHHHHTSHHHHHTTCCHH---HHHHHHHHHHHHHT-TC----CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCG
T ss_pred cccchHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHH-hC----CCcchHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 34679999998888877776543 33444555554431 11 11112345777777776642 111
Q ss_pred ---CchhHHHHH--HHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccch---hhhHHHHHhh
Q 003081 262 ---SKVDSISKA--SIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQT---EKLENLRISI 333 (850)
Q Consensus 262 ---s~~~evr~~--a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~---d~id~~r~~~ 333 (850)
.+..-++.. .+.+...+++..|..+.|++..+.|.+++.-.... +.+.......|... .....+|.
T Consensus 679 ~~~~d~~~i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~~~l~~y~~~s----~~i~~~v~~~g~~~~~~~~~~~~r~-- 752 (1073)
T 3gjx_A 679 DILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNVYKCLS----ENISAAIQANGEMVTKQPLIRSMRT-- 752 (1073)
T ss_dssp GGGGCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHCGGGGSSHHHHHHHH--
T ss_pred hhccChHHHHHHHHHHhhhHHHHhhcchhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhCCchhhccHHHHHHHH--
Confidence 111113332 35677778889999999999888888887643211 11111111111110 11112221
Q ss_pred ccCCcHHHHHHHHHhhcCh--hhHhhHHHHHHHHH----hccCCCchHh-hHHHHHHHHHHHhcccccchHHHHHHHHHH
Q 003081 334 AKGSPMWDTLDLCINVVDT--ESLDQLVPHLARLV----RSGIGLNTRV-GVASFISLLVQKIGMDIKPYTSMLLRLLFP 406 (850)
Q Consensus 334 ~~~s~l~eal~~~~~~ld~--~~l~~lvp~L~~~l----k~~~~~~tr~-~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~ 406 (850)
++. -+..-++.++..-++ .+...++|.|.+.+ ++.+ ...|. ....+...++.+.+..+.|++..++..++.
T Consensus 753 ik~-eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~-p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~ 830 (1073)
T 3gjx_A 753 VKR-ETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNV-PAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFE 830 (1073)
T ss_dssp HHH-HHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSC-GGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCC-cccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 110 001112222322211 12344555555443 2221 12233 566777778899999998988888877654
Q ss_pred hhhhcCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhchhhhhh----hHhhHhHH
Q 003081 407 VVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSG----YHAVIVPV 482 (850)
Q Consensus 407 ~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~~d~~~r~~~~~~l~al~~~~~~~f~~----~~~~vlP~ 482 (850)
.-. ..+- +.+.+-++.|.....++.++..++...|-. ..+.++-.
T Consensus 831 ~Tl---------------~mi~----------------~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~ 879 (1073)
T 3gjx_A 831 CTL---------------NMIN----------------KDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDS 879 (1073)
T ss_dssp HHH---------------HHHS----------------SCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHH
T ss_pred HHH---------------HHHh----------------CCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHH
Confidence 431 0000 000122455666666677776666554422 23334444
Q ss_pred HHHHhcCCchHHHHHHHHH----HHHhcCCC---hhhHHhhHHHHHHHHHHhhcCCC
Q 003081 483 IFISRFEDDKYVSDLFEEL----WEENTSGD---RVTLQLYLGEIVSLICEGIASSS 532 (850)
Q Consensus 483 l~~~~~d~~~~v~~~~~~v----~~~l~~~~---~~~i~~yl~eIl~ll~~~L~d~s 532 (850)
+.-+...+.+++.+...++ +..+.... ..-.+.|.-.|+.-+...+.|+.
T Consensus 880 i~wa~kh~~r~i~~~~l~~~~~ll~~~~~~~~~~~~F~~~~~~~~~~~i~~v~td~~ 936 (1073)
T 3gjx_A 880 IIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTS 936 (1073)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHcCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 4445444456555443333 33322210 01124555566666666677765
No 59
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.82 E-value=2.7e-07 Score=97.73 Aligned_cols=236 Identities=11% Similarity=0.050 Sum_probs=161.1
Q ss_pred HHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHHHH
Q 003081 359 VPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQK 438 (850)
Q Consensus 359 vp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~~ 438 (850)
++.|.+.+++. ....|..++..|..+. .+..++.+...+ +|+++.||..++.++|.+.. ....+..
T Consensus 25 i~~L~~~L~~~-~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l-~d~~~~vR~~A~~aL~~l~~--~~~~~~~ 90 (280)
T 1oyz_A 25 DDELFRLLDDH-NSLKRISSARVLQLRG----------GQDAVRLAIEFC-SDKNYIRRDIGAFILGQIKI--CKKCEDN 90 (280)
T ss_dssp HHHHHHHTTCS-SHHHHHHHHHHHHHHC----------CHHHHHHHHHHH-TCSSHHHHHHHHHHHHHSCC--CTTTHHH
T ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHccC----------CchHHHHHHHHH-cCCCHHHHHHHHHHHHHhcc--ccccchH
Confidence 56666667654 4556778888776542 245677788888 78999999999999998753 2223444
Q ss_pred HHHHHHHhhc--CCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhh
Q 003081 439 LIEETAALHI--DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLY 516 (850)
Q Consensus 439 li~~l~~~~~--~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~y 516 (850)
+++.+.+... +|+..|..++.+++.+....+ .+.+.++|.+.....++++.||......+..+..
T Consensus 91 l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------- 157 (280)
T 1oyz_A 91 VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------- 157 (280)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC---------
Confidence 5555543322 455678888888888764332 2344577777777788899999887777654322
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccc
Q 003081 517 LGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDIS 596 (850)
Q Consensus 517 l~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~ 596 (850)
++.++.+...+.|+++.||..|+.+++.+. . .-+.++|.|.+.+.+.++..|...+.+|+.+..
T Consensus 158 -~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----~----~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~------- 221 (280)
T 1oyz_A 158 -KATIPLLINLLKDPNGDVRNWAAFAININK----Y----DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD------- 221 (280)
T ss_dssp --CCHHHHHHHHTCSSHHHHHHHHHHHHHHT----C----CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC-------
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHhhc----c----CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-------
Confidence 224566667789999999999999998763 1 125678888999988889999999999986631
Q ss_pred cCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCchhHHhHHHHHHhhcc
Q 003081 597 AEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCG 654 (850)
Q Consensus 597 ~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~~~~~~~iv~~~l~~~~~ 654 (850)
+..++.+...+++.+ +|..|+.+||.+- .. .+.|.|.++..
T Consensus 222 -------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~----~~----~~~~~L~~~l~ 262 (280)
T 1oyz_A 222 -------KRVLSVLCDELKKNT--VYDDIIEAAGELG----DK----TLLPVLDTMLY 262 (280)
T ss_dssp -------GGGHHHHHHHHTSSS--CCHHHHHHHHHHC----CG----GGHHHHHHHHT
T ss_pred -------HhhHHHHHHHhcCcc--HHHHHHHHHHhcC----ch----hhhHHHHHHHh
Confidence 234555666665533 8999999998853 32 23455565543
No 60
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.77 E-value=2.7e-07 Score=95.31 Aligned_cols=220 Identities=15% Similarity=0.120 Sum_probs=147.7
Q ss_pred HHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhchhh-hhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHH
Q 003081 76 IYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHL-RLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEH 154 (850)
Q Consensus 76 v~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L-~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~ 154 (850)
+..++.+..+.. ...|..|+.+|..++....+...... ...+|.|..++.++++.||..+..+...+..+........
T Consensus 4 i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 4 VEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 567777776653 67788888999998876543222222 2689999999999999999999999999987644333333
Q ss_pred HH-HHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHh
Q 003081 155 LD-LIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRL 233 (850)
Q Consensus 155 ~~-~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~ 233 (850)
.+ ..++.|+..+.++++.+|+.++.+|+++..+.+...-.-.-...++.+++++++..+.||..+..++..++..
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~---- 158 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG---- 158 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS----
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC----
Confidence 32 3788889999999999999999999999864321111111124688888999999999999876555544310
Q ss_pred hhcccCcchhHHhH-HHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccc-hHHHHHHHHHhccccchh
Q 003081 234 CDVTLTEISDARQS-MDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPH-LSDLVSCMLESLSSLEDQ 307 (850)
Q Consensus 234 ~~~~~~~~~~~~~~-l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~-lp~Lvp~LL~~Ls~~ep~ 307 (850)
+......+ -..++|.|+. -+.++++++|..++.+|.+++.......... -..++|.|++.+.+.++.
T Consensus 159 ------~~~~~~~~~~~~~i~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 227 (252)
T 4hxt_A 159 ------PDEAIKAIVDAGGVEVLVK-LLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSE 227 (252)
T ss_dssp ------CHHHHHHHHHTTHHHHHHH-HTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHH
T ss_pred ------CHHHHHHHHHCcCHHHHHH-HHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHH
Confidence 00011111 1245666663 3456778999999999999986322211111 134678888888765543
No 61
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.73 E-value=2.1e-07 Score=94.21 Aligned_cols=176 Identities=15% Similarity=0.146 Sum_probs=128.3
Q ss_pred cCCchHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChH
Q 003081 70 MGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKR 149 (850)
Q Consensus 70 ~g~p~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~ 149 (850)
.++|+.+..++.+..+. .|..|..|+.+|+.+-. +..+|.|..++.|+++.||..+......+-. +
T Consensus 15 ~~~~~~~~~L~~~L~~~-~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-~-- 80 (211)
T 3ltm_A 15 RADPEKVEMYIKNLQDD-SYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-E-- 80 (211)
T ss_dssp -CCGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-G--
T ss_pred hcCHhHHHHHHHHHcCC-CHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-H--
Confidence 46788888899888754 58889999888876532 2468888888899999999999888777642 1
Q ss_pred HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Q 003081 150 TIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSL 229 (850)
Q Consensus 150 ~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~ 229 (850)
..++.|...+.|+++.||.+++.+++.+-. + +.++.+...++|..+.||.+|..++..++
T Consensus 81 -------~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----~-------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-- 140 (211)
T 3ltm_A 81 -------RAVEPLIKALKDEDGWVRQSAAVALGQIGD----E-------RAVEPLIKALKDEDWFVRIAAAFALGEIG-- 140 (211)
T ss_dssp -------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----G-------GGHHHHHHHTTCSSHHHHHHHHHHHHHHC--
T ss_pred -------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----H-------HHHHHHHHHHhCCCHHHHHHHHHHHHHcC--
Confidence 345666777899999999999999998732 1 34455667789999999998865444331
Q ss_pred HHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhh
Q 003081 230 TIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQG 308 (850)
Q Consensus 230 ~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~ 308 (850)
+ ...+|.|+. .+.++++.||..++.+|+.+. -+..++.|.+.+.+.++.+
T Consensus 141 -----~-------------~~~~~~L~~-~l~d~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~v 190 (211)
T 3ltm_A 141 -----D-------------ERAVEPLIK-ALKDEDGWVRQSAADALGEIG----------GERVRAAMEKLAETGTGFA 190 (211)
T ss_dssp -----C-------------GGGHHHHHH-HTTCSSHHHHHHHHHHHHHHC----------SHHHHHHHHHHHHHCCHHH
T ss_pred -----C-------------HHHHHHHHH-HHcCCCHHHHHHHHHHHHHhC----------chhHHHHHHHHHhCCCHHH
Confidence 1 123444442 355678899999999999882 1677888888887655544
No 62
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.72 E-value=2.5e-07 Score=93.35 Aligned_cols=193 Identities=13% Similarity=0.081 Sum_probs=133.2
Q ss_pred HHHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhchhh-hhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHH
Q 003081 75 LIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHL-RLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDE 153 (850)
Q Consensus 75 lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L-~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~ 153 (850)
..+.+..+..+. ++.-|..|+.+|+.+..+..+.....+ ...+|.|..++.++++.||..+..+...+..+.......
T Consensus 13 ~~~~l~~LL~s~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 13 ELPQMVQQLNSP-DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp CHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred hhHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 345666666655 478888999999999854433222222 268999999999999999999999999888554433333
Q ss_pred HH-HHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHH-HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHH
Q 003081 154 HL-DLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKH-LRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTI 231 (850)
Q Consensus 154 ~~-~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~-L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~ 231 (850)
.+ ...++.|+..+.++++++|+.+|.+++++..+.+. ..... -...++.+.+++++..+.||..|..++..+....
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~- 169 (210)
T 4db6_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE-QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG- 169 (210)
T ss_dssp HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-
T ss_pred HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHH-HHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-
Confidence 33 23788899999999999999999999999875432 11111 1357888899999988999998865555553210
Q ss_pred HhhhcccCcchhHHhHH-HHhHHHHhhccCCCchhHHHHHHHHHHHHHHH
Q 003081 232 RLCDVTLTEISDARQSM-DIVLPFLLAEGILSKVDSISKASIGVVMKLVK 280 (850)
Q Consensus 232 r~~~~~~~~~~~~~~~l-~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~ 280 (850)
+.....+. ...+|.|+. -+.++++++|..++.+|..+++
T Consensus 170 ---------~~~~~~~~~~g~i~~L~~-ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 170 ---------NEQKQAVKEAGALEKLEQ-LQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp ---------HHHHHHHHHTTHHHHHHH-GGGCSCHHHHHHHHHHHHHHCC
T ss_pred ---------cHHHHHHHHCCCHHHHHH-HHhCCCHHHHHHHHHHHHHHhc
Confidence 01111121 235666653 2456778999999999998853
No 63
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.72 E-value=5.9e-07 Score=90.07 Aligned_cols=190 Identities=14% Similarity=0.106 Sum_probs=139.1
Q ss_pred cccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhc-CCchhhHHHHHHHHHHHhhchh
Q 003081 392 DIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASD 470 (850)
Q Consensus 392 ~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~-~d~~~r~~~~~~l~al~~~~~~ 470 (850)
...++-+.....++..+ .|+++.||..++.+++.+.. ++ .++.+.+.+. +|+..|..++.+++.+..
T Consensus 7 ~~~~~~~~~~~~~i~~L-~~~~~~vr~~A~~~L~~~~~---~~----~~~~L~~~l~~~~~~vr~~a~~~L~~~~~---- 74 (201)
T 3ltj_A 7 HHHHTDPEKVEMYIKNL-QDDSYYVRRAAAYALGKIGD---ER----AVEPLIKALKDEDAWVRRAAADALGQIGD---- 74 (201)
T ss_dssp CCCCCCHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHCC---GG----GHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred cccccCCcchHHHHHHh-cCCCHHHHHHHHHHHHhcCC---hh----HHHHHHHHHcCCCHHHHHHHHHHHHhhCC----
Confidence 44556667788889999 79999999999999987642 22 2344445443 455678777766666531
Q ss_pred hhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh
Q 003081 471 VLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEIL 550 (850)
Q Consensus 471 ~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~ 550 (850)
+..+|.+.....++++.+|......+..+.. ++.++.+...+.|+++.||..|+.+++.+..
T Consensus 75 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 136 (201)
T 3ltj_A 75 ------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 136 (201)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--
Confidence 1345666666778888999887777765533 1244556677899999999999999997742
Q ss_pred CcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 003081 551 GESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLE 630 (850)
Q Consensus 551 g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg 630 (850)
+..+|.|.+.+.+.++..|..++.+|+.+.. +..++.+...+++.++.+|..|...|+
T Consensus 137 --------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--------------~~~~~~L~~~l~d~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 137 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--------------ERVRAAMEKLAETGTGFARKVAVNYLE 194 (201)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--------------HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------------hhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3467788888888889999999999987721 446666777777889999999999998
Q ss_pred HHH
Q 003081 631 QVI 633 (850)
Q Consensus 631 ~l~ 633 (850)
.+-
T Consensus 195 ~l~ 197 (201)
T 3ltj_A 195 THK 197 (201)
T ss_dssp HCC
T ss_pred HHH
Confidence 753
No 64
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.71 E-value=1.1e-06 Score=90.80 Aligned_cols=234 Identities=14% Similarity=0.082 Sum_probs=163.0
Q ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHH--H--HHHHHHHHHhhc-CCchhhHHHHHHHHHHHhhchhhhhhh
Q 003081 401 LRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQ--A--QKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGY 475 (850)
Q Consensus 401 L~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~--v--~~li~~l~~~~~-~d~~~r~~~~~~l~al~~~~~~~f~~~ 475 (850)
++.++..+ .+.++.++..++.+++.+....++.. + ...++.+.+.+. +++..|..++.++..++...++.-...
T Consensus 4 i~~L~~~L-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 4 VEKLVKLL-TSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHT-TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 56677777 56779999999999999987654221 1 135666777765 456678888888888876544332222
Q ss_pred H-hhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHh-hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcc
Q 003081 476 H-AVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQL-YLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGES 553 (850)
Q Consensus 476 ~-~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~-yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~ 553 (850)
. ...+|.+.....++++.++..+..++..++......... .-...++.+...+.++++.+|..++.+|+.++...+..
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 2 246777776677778889998888888888544322222 22347788888999999999999999999998642221
Q ss_pred hhhh-HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 003081 554 LSNY-HHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQV 632 (850)
Q Consensus 554 l~~~-l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l 632 (850)
.... -..++|.|.+.+...++..|..++.+|+.++......... -.-..+++.++.-+...++.+|..|+++|+.+
T Consensus 163 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~---l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 239 (252)
T 4hxt_A 163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKA---IVDAGGVEVLQKLLTSTDSEVQKEAQRALENI 239 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHH---HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH---HHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 1111 2457889999998888899999999999987533221100 00123567778888888999999999999999
Q ss_pred HHHcCC
Q 003081 633 IKAFRD 638 (850)
Q Consensus 633 ~~~~~~ 638 (850)
....+.
T Consensus 240 ~~~~~~ 245 (252)
T 4hxt_A 240 KSGGWL 245 (252)
T ss_dssp HHTCBC
T ss_pred HcCCCc
Confidence 886543
No 65
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.70 E-value=2.2e-07 Score=96.59 Aligned_cols=211 Identities=13% Similarity=0.121 Sum_probs=144.3
Q ss_pred cchHHHHHHHhhh-------cCCchHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhchhh-hhHHHHHHhhcCCC
Q 003081 57 LSTYKELCNLANE-------MGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHL-RLLIPKLVRFQYDP 128 (850)
Q Consensus 57 ~styk~l~~lA~~-------~g~p~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L-~~lvp~L~r~~~Dp 128 (850)
..+-+.|.++.+. +-+...+..++.+..+.. ..-+..|+.+|+.+..+..+.-...+ ...+|.|...+.++
T Consensus 30 ~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~ 108 (252)
T 4db8_A 30 LSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP 108 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC
Confidence 4445556554443 222356788888887764 67788899999999864322222222 24899999999999
Q ss_pred CHhHHHHHHHHHHHhccCChHHHHHHHH-HHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhH-HHHHHHHHHHH
Q 003081 129 DKNVQDAMAHIWKSLVADPKRTIDEHLD-LIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGK-HLRRIWTAAFR 206 (850)
Q Consensus 129 ~~~VR~a~~~iw~~Lv~d~~~~i~~~~~-~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~-~L~~i~~~l~~ 206 (850)
++.||..+..+...+..++........+ ..++.|+..+.+.++++|+.++.+|+++..+.+. .... .-..+++.+.+
T Consensus 109 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~ 187 (252)
T 4db8_A 109 NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE-QIQAVIDAGALPALVQ 187 (252)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH-HHHHHHHCCCHHHHHH
Confidence 9999999999999998776533243343 3889999999999999999999999999875421 1111 11356788889
Q ss_pred HhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHH-HhHHHHhhccCCCchhHHHHHHHHHHHHHHH
Q 003081 207 AMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMD-IVLPFLLAEGILSKVDSISKASIGVVMKLVK 280 (850)
Q Consensus 207 ~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~-~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~ 280 (850)
++++..+.||..|..++..+.. +++.....+++ .++|.|+. -+.+.++++|..++.+|.++++
T Consensus 188 ll~~~~~~v~~~a~~~L~~l~~----------~~~~~~~~~~~~g~i~~L~~-ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 188 LLSSPNEQILQEALWALSNIAS----------GGNEQKQAVKEAGALEKLEQ-LQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp GGGCSSHHHHHHHHHHHHHHTT----------SCHHHHHHHHHTTHHHHHHT-TTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHCCCCHHHHHHHHHHHHHHhc----------CCHHHHHHHHHCCcHHHHHH-HhCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999988655554421 01111222333 36777763 3556778999999999988753
No 66
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.70 E-value=6.1e-05 Score=87.56 Aligned_cols=407 Identities=13% Similarity=0.050 Sum_probs=207.5
Q ss_pred hhhhHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHH-HHHHHHHHhhCCC
Q 003081 91 SKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLD-LIFDDLLIQSGSR 169 (850)
Q Consensus 91 sr~gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~-~Il~~Ll~~l~~~ 169 (850)
..||+.-.+..+.++.... .++-..-+|.|..++..+++.+|..+...+..+............+ -.+|.|+..+.+.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~ 102 (584)
T 3l6x_A 24 HERGSLASLDSLRKGGPPP-PNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHP 102 (584)
T ss_dssp ----------------CCC-CCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCS
T ss_pred cccchHHHHHHHHhcCCCC-CCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCC
Confidence 3468888888887763211 1122234666777778899999988877777676433222222222 3578899999999
Q ss_pred ChhHHHHHHHHHHHHHccCCch---hhhHHHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHH
Q 003081 170 LWRSREASCLSLADIIQGRKFD---QVGKHLRRIWTAAFRAMDD-IKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDAR 245 (850)
Q Consensus 170 ~wRVReaa~~Al~~Ll~~~~~~---~l~~~L~~i~~~l~~~ldD-~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~ 245 (850)
+..+++.|+.||.+|..+...+ .+.. ...++.+.+++.. ....+++.|..+++.|+. ++.. ..
T Consensus 103 ~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~--~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-----~~~~------k~ 169 (584)
T 3l6x_A 103 KKEVHLGACGALKNISFGRDQDNKIAIKN--CDGVPALVRLLRKARDMDLTEVITGTLWNLSS-----HDSI------KM 169 (584)
T ss_dssp SHHHHHHHHHHHHHHTSSSCHHHHHHHHH--TTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-----SGGG------HH
T ss_pred CHHHHHHHHHHHHHHHccCCHHHHHHHHH--cCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-----Cchh------hH
Confidence 9999999999999998753221 2222 1456777777775 467788888777777653 1211 12
Q ss_pred hHHHHhHHHHhh------ccCC-----------CchhHHHHHHHHHHHHHHHhc---CcccccchHHHHHHHHHhccccc
Q 003081 246 QSMDIVLPFLLA------EGIL-----------SKVDSISKASIGVVMKLVKGA---GIAIRPHLSDLVSCMLESLSSLE 305 (850)
Q Consensus 246 ~~l~~lLP~Ll~------~gL~-----------s~~~evr~~a~~~L~~la~~~---g~~l~P~lp~Lvp~LL~~Ls~~e 305 (850)
.++...+|.|+. .|.. ++..+|+..+..+|.+++... ...+..+ +.+++.|+..+.+.
T Consensus 170 ~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~-~Gli~~LV~~L~~~- 247 (584)
T 3l6x_A 170 EIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLREC-DGLVDALIFIVQAE- 247 (584)
T ss_dssp HHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHS-TTHHHHHHHHHHHH-
T ss_pred HHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHc-CCcHHHHHHHHHHh-
Confidence 233445666553 1211 124688999999999997532 1222211 23445555544310
Q ss_pred hhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHH
Q 003081 306 DQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLL 385 (850)
Q Consensus 306 p~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L 385 (850)
...... .+.. .. .+ ..+|..+.... ..-+|......... +.. . .+..
T Consensus 248 ----------~~~~~~-~~~~--~e-na------v~aL~NLs~~~-----~~e~~~~~~~~~~~---~~~----~-~~~~ 294 (584)
T 3l6x_A 248 ----------IGQKDS-DSKL--VE-NC------VCLLRNLSYQV-----HREIPQAERYQEAA---PNV----A-NNTG 294 (584)
T ss_dssp ----------HHTTCC-SCHH--HH-HH------HHHHHHHHTTH-----HHHSTTCCC---------------------
T ss_pred ----------hcccCc-cHHH--HH-HH------HHHHHHhhccc-----cccccchhhhhhhc---ccc----c-cccc
Confidence 000000 0000 00 00 01111111111 00111000000000 000 0 0000
Q ss_pred HHHhcccccc-hHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHH--H----H--HHHHHHHHHhhc-CCchhhH
Q 003081 386 VQKIGMDIKP-YTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPS--Q----A--QKLIEETAALHI-DDKNSQI 455 (850)
Q Consensus 386 ~~~~~~~~~p-y~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~--~----v--~~li~~l~~~~~-~d~~~r~ 455 (850)
......+.. +....++.++..+....++.+++.++.|+..|+...... . + ..-++.|.+++. .++..+.
T Consensus 295 -~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~ 373 (584)
T 3l6x_A 295 -TSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVK 373 (584)
T ss_dssp --CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHH
T ss_pred -ccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHH
Confidence 111112211 123567777887743467999999999999998754321 1 1 234667777775 4566677
Q ss_pred HHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCC--------chHHHHHHHHHHHHhcCCChhhHHhhH-HHHHHHHHH
Q 003081 456 SCAILLKSYSSVASDVLSGYHAVIVPVIFISRFED--------DKYVSDLFEELWEENTSGDRVTLQLYL-GEIVSLICE 526 (850)
Q Consensus 456 ~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~--------~~~v~~~~~~v~~~l~~~~~~~i~~yl-~eIl~ll~~ 526 (850)
.++.++..++...... .......+|-+....... .+++...+..++..++.+.....+... ...++.+..
T Consensus 374 ~A~~aL~nLs~~~~~~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~ 452 (584)
T 3l6x_A 374 AASGALRNLAVDARNK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVL 452 (584)
T ss_dssp HHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHhCChhHH-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHH
Confidence 8888888887653211 122345666655433221 345666666666666654333222222 235666777
Q ss_pred hhcCC--CHHHHHHHHHHHHHHHH
Q 003081 527 GIASS--SWSSKRKSAKAICKLGE 548 (850)
Q Consensus 527 ~L~d~--s~~vr~~aa~alg~la~ 548 (850)
.+.+. +..+++.|+.+|..++.
T Consensus 453 LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 453 INKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred HHhCCCCChHHHHHHHHHHHHHHc
Confidence 77765 78899999999998875
No 67
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.63 E-value=8.9e-07 Score=88.75 Aligned_cols=174 Identities=16% Similarity=0.169 Sum_probs=123.9
Q ss_pred CchHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHH
Q 003081 72 QPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTI 151 (850)
Q Consensus 72 ~p~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i 151 (850)
+|.....|+.+.++. +|.-|..|+.+|+.+-. ...+|.|.+++.|+++.||..+......+-. +
T Consensus 12 ~~~~~~~~i~~L~~~-~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-~---- 75 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDD-SYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-E---- 75 (201)
T ss_dssp CHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-G----
T ss_pred CCcchHHHHHHhcCC-CHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-H----
Confidence 346677888888776 58889999988876432 2367888888899999999999887776642 1
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHH
Q 003081 152 DEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTI 231 (850)
Q Consensus 152 ~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~ 231 (850)
..++.|...+.|+++.||..++.+++.+-. + +.++.+...++|..+.||.+|..++..++
T Consensus 76 -----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----~-------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~---- 135 (201)
T 3ltj_A 76 -----RAVEPLIKALKDEDGWVRQSAAVALGQIGD----E-------RAVEPLIKALKDEDWFVRIAAAFALGEIG---- 135 (201)
T ss_dssp -----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----G-------GGHHHHHHHTTCSSHHHHHHHHHHHHHHT----
T ss_pred -----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----H-------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC----
Confidence 235666777889999999999999998732 1 34455566788999999998864444331
Q ss_pred HhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhh
Q 003081 232 RLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQG 308 (850)
Q Consensus 232 r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~ 308 (850)
+ ...+|.|.. -+.++++.||..++.+|+.+ | -+..++.|...+.+.++.+
T Consensus 136 ---~-------------~~~~~~L~~-~l~d~~~~vr~~A~~aL~~~----~------~~~~~~~L~~~l~d~~~~v 185 (201)
T 3ltj_A 136 ---D-------------ERAVEPLIK-ALKDEDGWVRQSAADALGEI----G------GERVRAAMEKLAETGTGFA 185 (201)
T ss_dssp ---C-------------GGGHHHHHH-HTTCSSHHHHHHHHHHHHHH----C------SHHHHHHHHHHHHHCCHHH
T ss_pred ---C-------------HHHHHHHHH-HHcCCCHHHHHHHHHHHHHh----C------chhHHHHHHHHHhCCCHHH
Confidence 1 123444442 34567789999999999988 2 2567788888776554443
No 68
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.63 E-value=1.2e-06 Score=88.54 Aligned_cols=186 Identities=14% Similarity=0.105 Sum_probs=133.0
Q ss_pred HHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhc-CCchhhHHHHHHHHHHHhhchhhhhhhHh
Q 003081 399 MLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYHA 477 (850)
Q Consensus 399 ~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~-~d~~~r~~~~~~l~al~~~~~~~f~~~~~ 477 (850)
..++.++..+ .|+++.||..++.+++.+.. ++ .++.+.+.+. +|+..|..+..+++.+.. +
T Consensus 19 ~~~~~L~~~L-~~~~~~vR~~A~~~L~~~~~---~~----~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~ 80 (211)
T 3ltm_A 19 EKVEMYIKNL-QDDSYYVRRAAAYALGKIGD---ER----AVEPLIKALKDEDAWVRRAAADALGQIGD----------E 80 (211)
T ss_dssp GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC---GG----GHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------G
T ss_pred hHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC---cc----HHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------H
Confidence 4566777788 68999999999999987642 22 2334444443 455678777777666532 2
Q ss_pred hHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhh
Q 003081 478 VIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNY 557 (850)
Q Consensus 478 ~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~ 557 (850)
..+|.+.....++++.||......+..+.. ++.++.+...+.|+++.+|..|+.+|+.+..
T Consensus 81 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------- 141 (211)
T 3ltm_A 81 RAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------- 141 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---------
Confidence 345665566678888999888777766533 1244566677899999999999999997732
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHc
Q 003081 558 HHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAF 636 (850)
Q Consensus 558 l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~ 636 (850)
+..+|.|.+.+.+.++..|..++.+|+.+.. +..++.+...+++.++.+|..|..+|+.+-...
T Consensus 142 -~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 142 -ERAVEPLIKALKDEDGWVRQSAADALGEIGG--------------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp -GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--------------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 3467778888888889999999999987721 456677777777889999999999999876544
No 69
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.59 E-value=2.4e-05 Score=94.44 Aligned_cols=354 Identities=12% Similarity=0.004 Sum_probs=201.2
Q ss_pred HHHHhhhcCCchHHHHHHHHhcc-------chhh------hhhhhHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcC---
Q 003081 63 LCNLANEMGQPDLIYKFMDLANY-------QVSL------NSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQY--- 126 (850)
Q Consensus 63 l~~lA~~~g~p~lv~~fm~la~~-------~~~w------~sr~gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~--- 126 (850)
++++|. .++.-||+.... +..| |.+=+|+.++|.|..+-.+ +.+..|-.|++
T Consensus 338 ~~~~A~-----~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~~k~sA~aSLGlIh~g~~~-------~gl~~L~~yL~~~~ 405 (963)
T 4ady_A 338 LFHTAV-----SVANGFMHAGTTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLL-------EGKKVMAPYLPGSR 405 (963)
T ss_dssp HHHHHH-----HHHHHHHTTTTCCCHHHHHCHHHHHHCCTHHHHHHHHHHHHHTSSCTT-------THHHHHTTTSTTSC
T ss_pred HHHHHH-----HHHHHHHhCCCCcchhhhcchhhhhccchHHHHHHHHHhhhhccCchH-------HHHHHHHHhccccC
Confidence 455555 556677764421 1225 2345777889988764322 12333333444
Q ss_pred CCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCC--------ChhHHHHHHHHHHHHHccCCchhhhHHHH
Q 003081 127 DPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSR--------LWRSREASCLSLADIIQGRKFDQVGKHLR 198 (850)
Q Consensus 127 Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~--------~wRVReaa~~Al~~Ll~~~~~~~l~~~L~ 198 (850)
..++.||..+.-..+.+-.+... + ++..|...+.+. ...+|.+||.+||-..-|..-+++.+
T Consensus 406 s~~~~ik~GAllaLGli~ag~~~---~----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e--- 475 (963)
T 4ady_A 406 ASSRFIKGGSLYGLGLIYAGFGR---D----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYE--- 475 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTTTH---H----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHH---
T ss_pred CCcHHHHHHHHHHHHHhcCCCcH---H----HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHH---
Confidence 57889999998888877655432 2 223233333222 26899999999999877766554433
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHH
Q 003081 199 RIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKL 278 (850)
Q Consensus 199 ~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~l 278 (850)
.+..++.|....+|..|. -.++.+.+..++ ..++..++..+.+ +....+|.++...|+.+
T Consensus 476 ----~L~~~L~dd~~~~~~~Aa---lALGli~vGTgn---------~~ai~~LL~~~~e----~~~e~vrR~aalgLGll 535 (963)
T 4ady_A 476 ----ALKEVLYNDSATSGEAAA---LGMGLCMLGTGK---------PEAIHDMFTYSQE----TQHGNITRGLAVGLALI 535 (963)
T ss_dssp ----HHHHHHHTCCHHHHHHHH---HHHHHHHTTCCC---------HHHHHHHHHHHHH----CSCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHhcCCHHHHHHHH---HHHhhhhcccCC---------HHHHHHHHHHHhc----cCcHHHHHHHHHHHHhh
Confidence 333444444456675443 344444332221 2356667776653 23457888888877766
Q ss_pred HHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhH
Q 003081 279 VKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQL 358 (850)
Q Consensus 279 a~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~l 358 (850)
. .|.. +.++.+++.
T Consensus 536 ~--~g~~------e~~~~li~~---------------------------------------------------------- 549 (963)
T 4ady_A 536 N--YGRQ------ELADDLITK---------------------------------------------------------- 549 (963)
T ss_dssp T--TTCG------GGGHHHHHH----------------------------------------------------------
T ss_pred h--CCCh------HHHHHHHHH----------------------------------------------------------
Confidence 2 1211 111222222
Q ss_pred HHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHHHH
Q 003081 359 VPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQK 438 (850)
Q Consensus 359 vp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~~ 438 (850)
+....+.-.|.+++-+++. ..+|..= ...++.|+..+.+|.+..||+.++.++|.+.-..+ +.
T Consensus 550 -------L~~~~dp~vRygaa~algl--AyaGTGn----~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~-e~--- 612 (963)
T 4ady_A 550 -------MLASDESLLRYGGAFTIAL--AYAGTGN----NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY-TT--- 612 (963)
T ss_dssp -------HHHCSCHHHHHHHHHHHHH--HTTTSCC----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC-SS---
T ss_pred -------HHhCCCHHHHHHHHHHHHH--HhcCCCC----HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH-HH---
Confidence 2211122233344333321 1222111 12233333333357788899999999998754433 22
Q ss_pred HHHHHHHhhc--CCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhh
Q 003081 439 LIEETAALHI--DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLY 516 (850)
Q Consensus 439 li~~l~~~~~--~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~y 516 (850)
++++.+.+. .|+..|..++.+++-++...+. ..++..+-...+|.+..||..+...++.+..+...+..+.
T Consensus 613 -v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~r 685 (963)
T 4ady_A 613 -VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQ 685 (963)
T ss_dssp -HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTT
T ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchH
Confidence 333334332 4677788888888777533331 2244444445789999999998888887777665666677
Q ss_pred HHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHH
Q 003081 517 LGEIVSLICEGIAS--SSWSSKRKSAKAICKLGE 548 (850)
Q Consensus 517 l~eIl~ll~~~L~d--~s~~vr~~aa~alg~la~ 548 (850)
+..++..+.....+ .+...|-.+..+.|-+..
T Consensus 686 va~~l~~L~~~~~dk~~d~~~~fga~iAqGll~a 719 (963)
T 4ady_A 686 VADINKNFLSVITNKHQEGLAKFGACVAQGIMNA 719 (963)
T ss_dssp HHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhc
Confidence 88888888887765 567788888888886653
No 70
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=98.58 E-value=6.6e-05 Score=95.65 Aligned_cols=442 Identities=8% Similarity=0.040 Sum_probs=237.5
Q ss_pred CCchHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhh--------------hhhchhhhhHHHHHHhhcCC---------
Q 003081 71 GQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAG--------------DALKPHLRLLIPKLVRFQYD--------- 127 (850)
Q Consensus 71 g~p~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~--------------~~l~p~L~~lvp~L~r~~~D--------- 127 (850)
.||+++..++++.+++. ..++++...|..+.+... +.+...++++++.++..+.+
T Consensus 131 ~Wp~ll~~L~~~~~~~~--~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~ 208 (1204)
T 3a6p_A 131 HWPDMLIELDTLSKQGE--TQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVK 208 (1204)
T ss_dssp TCTTHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 58999999999886643 557788888898887631 12344455666666655433
Q ss_pred ----------CCHhHHHHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCC-chh---
Q 003081 128 ----------PDKNVQDAMAHIWKSLVADPK-RTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRK-FDQ--- 192 (850)
Q Consensus 128 ----------p~~~VR~a~~~iw~~Lv~d~~-~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~-~~~--- 192 (850)
+++.++..+.++....+.-.+ ..+-++-..+++.++..+.+ .++|.+|+.+|..++.-.. .+.
T Consensus 209 ~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~ 286 (1204)
T 3a6p_A 209 TDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKP 286 (1204)
T ss_dssp TCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGG
T ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHH
Confidence 234455556665555543321 11111112477777766654 5789999999999998442 222
Q ss_pred hhHHH-HHHHHHHHHHh--------ccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCc
Q 003081 193 VGKHL-RRIWTAAFRAM--------DDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSK 263 (850)
Q Consensus 193 l~~~L-~~i~~~l~~~l--------dD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~ 263 (850)
+...+ ...+..++... +|.+..+++...++...++....+.+..... ......+..++++++.- ..++
T Consensus 287 li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~--~~~~~~l~~~l~~lL~~-t~~~ 363 (1204)
T 3a6p_A 287 LMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSD--VETPSNFGKYLESFLAF-TTHP 363 (1204)
T ss_dssp GGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS--CCCCTTHHHHHHHHHHH-HTSS
T ss_pred HHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcccc--ccChhHHHHHHHHHHHH-HhCc
Confidence 22222 11122333332 3344556666666666666544443331100 00123456677777741 2335
Q ss_pred hhHHHHHHHHHHHHHHHhc----CcccccchHHHHHHH---HHhccccchhh---hhHHHHhhhhcccch---hhhHHHH
Q 003081 264 VDSISKASIGVVMKLVKGA----GIAIRPHLSDLVSCM---LESLSSLEDQG---LNYIELHAANAGIQT---EKLENLR 330 (850)
Q Consensus 264 ~~evr~~a~~~L~~la~~~----g~~l~P~lp~Lvp~L---L~~Ls~~ep~~---~nyl~~~a~~~~~~~---d~id~~r 330 (850)
+.++...++..|..+.+.. .+.+.|+++.|++.+ +.-+.-.+... ..|. .+++..++ +.+...|
T Consensus 364 ~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~---~~D~d~~~E~~~~f~~~R 440 (1204)
T 3a6p_A 364 SQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYS---RFDFDSDEDFNAFFNSSR 440 (1204)
T ss_dssp CHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHH---HHHCSSHHHHHHHHHHHH
T ss_pred cHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhh---hcccCCcHHHHHHHHHHH
Confidence 6778888899999888763 244678888888888 43332111111 1121 11111111 2233444
Q ss_pred HhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCc------------------------hHhhHHHHHHHHH
Q 003081 331 ISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLN------------------------TRVGVASFISLLV 386 (850)
Q Consensus 331 ~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~------------------------tr~~a~~~l~~L~ 386 (850)
.. +.+.+..+........+..+.+.+...+.+..... ...+...++....
T Consensus 441 k~------~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~ 514 (1204)
T 3a6p_A 441 AQ------QGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVI 514 (1204)
T ss_dssp HH------HHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHH
T ss_pred HH------HHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHH
Confidence 32 23555555554444455666677766665421100 0112222232222
Q ss_pred HHhcccc-cch-----HHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCC--HHHHHHHHHHHHHhhcC----C----
Q 003081 387 QKIGMDI-KPY-----TSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYAT--PSQAQKLIEETAALHID----D---- 450 (850)
Q Consensus 387 ~~~~~~~-~py-----~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~--~~~v~~li~~l~~~~~~----d---- 450 (850)
..+.... .++ ...+++.+++. +..++.++......+|.+.+... ++.+..+++++...... +
T Consensus 515 ~~~~~~~e~~~l~~~~~~~Ll~~ll~~--~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~ 592 (1204)
T 3a6p_A 515 TQMFRTLNREEIPVNDGIELLQMVLNF--DTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAP 592 (1204)
T ss_dssp HHHHHHSCTTCCCHHHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSC
T ss_pred HHHhcccccccccHHHHHHHHHHHHhC--CCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCccccccc
Confidence 2221001 122 33444443332 23577899889898888776532 44566667766654321 1
Q ss_pred -----chhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhc--C--CchHHHHHHHHH--HHHhcCCChhhHHhhHHH
Q 003081 451 -----KNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRF--E--DDKYVSDLFEEL--WEENTSGDRVTLQLYLGE 519 (850)
Q Consensus 451 -----~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~--d--~~~~v~~~~~~v--~~~l~~~~~~~i~~yl~e 519 (850)
.+.|..|+.++..++..+++.|.+|++.+...+-.... . ...+...++..+ .....+. ......|+..
T Consensus 593 ~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~-~~~~~~~l~~ 671 (1204)
T 3a6p_A 593 RTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKN-YERQKVFLEE 671 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCC-HHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCC-HHHHHHHHHH
Confidence 13467888999999999999999999999886643221 1 123333333222 1111122 2334566777
Q ss_pred HHHHHHHhhcCC
Q 003081 520 IVSLICEGIASS 531 (850)
Q Consensus 520 Il~ll~~~L~d~ 531 (850)
+++-+...+.++
T Consensus 672 ll~P~~~~w~~~ 683 (1204)
T 3a6p_A 672 LMAPVASIWLSQ 683 (1204)
T ss_dssp HHHHHHHHHSCH
T ss_pred HHHHHHHHHccH
Confidence 777777666653
No 71
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=98.58 E-value=5.5e-05 Score=96.37 Aligned_cols=471 Identities=10% Similarity=0.028 Sum_probs=244.0
Q ss_pred CCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcc---C-C---------chhhh
Q 003081 128 PDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQG---R-K---------FDQVG 194 (850)
Q Consensus 128 p~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~---~-~---------~~~l~ 194 (850)
+.+.||..++.++..++.- ...+.++.++++|++.+++ +...++.+...|..|.+. . . .+.+.
T Consensus 108 ~~~~vr~kla~~la~Ia~~---d~p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~ 183 (1204)
T 3a6p_A 108 EENHIKDALSRIVVEMIKR---EWPQHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLT 183 (1204)
T ss_dssp SCHHHHHHHHHHHHHHHHH---HSTTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHH---hCcccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHH
Confidence 5699999999988887731 1223567788888877765 446688888888888652 1 0 11244
Q ss_pred HHHHHHHHHHHHHhccCc-------------------HHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHH---HHhH
Q 003081 195 KHLRRIWTAAFRAMDDIK-------------------ETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSM---DIVL 252 (850)
Q Consensus 195 ~~L~~i~~~l~~~ldD~k-------------------~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l---~~lL 252 (850)
.++++|++.+..++.+.. ..++.++.+++.....|. + ..-++ ..++
T Consensus 184 ~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi----~--------~~~i~~~~~~ll 251 (1204)
T 3a6p_A 184 QNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWV----S--------MSHITAENCKLL 251 (1204)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTS----C--------HHHHHTTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhcc----C--------HHHHHhccchHH
Confidence 556677777777665421 123333322222111111 0 00111 1366
Q ss_pred HHHhhccCCCchhHHHHHHHHHHHHHHHhcCc--ccccchHHH----HHHHHHhccccchhhhhHHHHhhhhcccchhhh
Q 003081 253 PFLLAEGILSKVDSISKASIGVVMKLVKGAGI--AIRPHLSDL----VSCMLESLSSLEDQGLNYIELHAANAGIQTEKL 326 (850)
Q Consensus 253 P~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~--~l~P~lp~L----vp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~i 326 (850)
+++.. -+ .++++|..|+++|..|+....+ ...+++..+ +..+++.+...++ .++++++.
T Consensus 252 ~~l~~-~l--~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~------------~~~~e~d~ 316 (1204)
T 3a6p_A 252 EILCL-LL--NEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADG------------GGLVEKHY 316 (1204)
T ss_dssp HHHHH-GG--GCTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCC------------CSCCHHHH
T ss_pred HHHHH-Hc--CCHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCC------------CCCccHHH
Confidence 66552 22 2468999999999999975432 111222111 1222222110000 01112222
Q ss_pred HHHHHhhccCCcHHHHHHHHHhh----cChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHh----cccccchHH
Q 003081 327 ENLRISIAKGSPMWDTLDLCINV----VDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKI----GMDIKPYTS 398 (850)
Q Consensus 327 d~~r~~~~~~s~l~eal~~~~~~----ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~----~~~~~py~~ 398 (850)
+..+.-+---..+.+.+..++.. -....+..+++.+.+.++.+ ....-..+..++..+.... ...+.||..
T Consensus 317 e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~-~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~ 395 (1204)
T 3a6p_A 317 VFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHP-SQFLRSSTQMTWGALFRHEILSRDPLLLAIIP 395 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCc-cHHhHHHHHHHHHHHHhcccccccHHHHHHHH
Confidence 22221000000011112122211 12345778899988888753 2222234555555454332 223567888
Q ss_pred HHHHHH---HHhhhhc--------------C--c-------HHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhcC---
Q 003081 399 MLLRLL---FPVVKEE--------------K--S-------AAAKRAFASACASVLKYATPSQAQKLIEETAALHID--- 449 (850)
Q Consensus 399 ~lL~~L---l~~l~~D--------------~--n-------~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~~--- 449 (850)
++++.+ +.-+..+ . . ..-|+.....+..++...+...+..+.+.+.+....
T Consensus 396 ~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~ 475 (1204)
T 3a6p_A 396 KYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLD 475 (1204)
T ss_dssp HHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhc
Confidence 888888 3222100 0 0 124555666666666666655554333333322210
Q ss_pred ---------------------Cchh--hHHHHHHHHHHHhhchhhh-hhhHh-hHhHHHHHH---hcCCchHHHHHHHHH
Q 003081 450 ---------------------DKNS--QISCAILLKSYSSVASDVL-SGYHA-VIVPVIFIS---RFEDDKYVSDLFEEL 501 (850)
Q Consensus 450 ---------------------d~~~--r~~~~~~l~al~~~~~~~f-~~~~~-~vlP~l~~~---~~d~~~~v~~~~~~v 501 (850)
++.+ ..+...++.++.+.+.+.- .++.. .++|-++.. ....++.++.....+
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~ 555 (1204)
T 3a6p_A 476 AGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTN 555 (1204)
T ss_dssp ---------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHH
T ss_pred ccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHH
Confidence 1111 2334445555544432111 11111 233333322 134567788777787
Q ss_pred HHHhcCCChhhHHhhHHHHHHHHHHhhcC------------CCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhc
Q 003081 502 WEENTSGDRVTLQLYLGEIVSLICEGIAS------------SSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEV 569 (850)
Q Consensus 502 ~~~l~~~~~~~i~~yl~eIl~ll~~~L~d------------~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L 569 (850)
|+.+..-... -..|++.+++.+...+.+ .+.++|+.|+.++..++..++..+.||+++|...+.+.+
T Consensus 556 l~~l~~~~~~-~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l 634 (1204)
T 3a6p_A 556 VSALFPFVTY-RPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLL 634 (1204)
T ss_dssp HHHHGGGGGT-CGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 8765543221 135778888877766655 234799999999999999999999999999999998877
Q ss_pred CCCC---hhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHc
Q 003081 570 PGRL---WEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAF 636 (850)
Q Consensus 570 ~~r~---~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~ 636 (850)
.... -.-+..+.+|++.++...+... ....++..+++.++.... ++.+++ ++.....++..+
T Consensus 635 ~~~~~l~~~e~~~L~eal~~ia~~~~~~~--~~~~~l~~ll~P~~~~w~--~~~~~~-~~s~~~~f~~~~ 699 (1204)
T 3a6p_A 635 SNELLLTQMEKCALMEALVLISNQFKNYE--RQKVFLEELMAPVASIWL--SQDMHR-VLSDVDAFIAYV 699 (1204)
T ss_dssp HSTTTSCHHHHHHHHHHHHHHHGGGCCHH--HHHHHHHHHHHHHHHHHS--CHHHHH-HHHCHHHHHHHH
T ss_pred hCcccccHHHHHHHHHHHHHHhccCCCHH--HHHHHHHHHHHHHHHHHc--cHHHHH-hhcCHHHHHHHh
Confidence 4222 3446667778877743322211 112356667766665552 344444 444444444443
No 72
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.47 E-value=4.4e-06 Score=88.62 Aligned_cols=196 Identities=12% Similarity=0.090 Sum_probs=125.9
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHHccCCchh----hhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcc
Q 003081 162 LLIQSGSRLWRSREASCLSLADIIQGRKFDQ----VGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVT 237 (850)
Q Consensus 162 Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~----l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~ 237 (850)
+...+.+++|..|..+...+..+++..+... ....+..+.+.+-+.+.|.+..|...+..++..+... +...
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~----~~~~ 89 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDA----FASS 89 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTT----CC--
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH----hhhh
Confidence 5578999999999999999999987644322 1122333334445667899999998887766655432 1111
Q ss_pred cCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhh
Q 003081 238 LTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAA 317 (850)
Q Consensus 238 ~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~ 317 (850)
.+.......++..++|.|+.+++.+..+.+|..++.++..++...+.. ..+++.++..+..-
T Consensus 90 ~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-----~~~~e~l~~~l~~K------------- 151 (278)
T 4ffb_C 90 SLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-----TQSVELVIPFFEKK------------- 151 (278)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-----HHHHHHHGGGGGCS-------------
T ss_pred hcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-----HHHHHHHHHHHhcc-------------
Confidence 111122345778899999988888887888989999888876544321 11222222222111
Q ss_pred hcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccc---c
Q 003081 318 NAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDI---K 394 (850)
Q Consensus 318 ~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~---~ 394 (850)
....|.+|+.++..++..+|... +
T Consensus 152 -----------------------------------------------------npkv~~~~l~~l~~~l~~fg~~~~~~k 178 (278)
T 4ffb_C 152 -----------------------------------------------------LPKLIAAAANCVYELMAAFGLTNVNVQ 178 (278)
T ss_dssp -----------------------------------------------------CHHHHHHHHHHHHHHHHHHTTTTCCHH
T ss_pred -----------------------------------------------------CHHHHHHHHHHHHHHHHHhCCCcCCch
Confidence 12345567777777777766443 3
Q ss_pred chHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCH
Q 003081 395 PYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATP 433 (850)
Q Consensus 395 py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~ 433 (850)
+.++.+++.+.+.+ +|+++.||.++...++.+.+..++
T Consensus 179 ~~l~~i~~~l~k~l-~d~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 179 TFLPELLKHVPQLA-GHGDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp HHHHHHGGGHHHHH-TCSSHHHHHHHHHHHHHHHTC---
T ss_pred hHHHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHHhCc
Confidence 45667788888888 899999999999999998877654
No 73
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.45 E-value=0.0001 Score=70.80 Aligned_cols=214 Identities=11% Similarity=0.091 Sum_probs=148.7
Q ss_pred hHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHH
Q 003081 357 QLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQA 436 (850)
Q Consensus 357 ~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v 436 (850)
+++..++..+.+. -|.++..+..++..++...+....|...+++ ..+..+..-..-++.++++|.+.+.. ++.+
T Consensus 32 ~~l~~lI~~LDDD-lwtV~kNAl~vi~~i~~~~~el~epl~~kL~----vm~~ksEaIpltqeIa~a~G~la~i~-Pe~v 105 (253)
T 2db0_A 32 SVLKKLIELLDDD-LWTVVKNAISIIMVIAKTREDLYEPMLKKLF----SLLKKSEAIPLTQEIAKAFGQMAKEK-PELV 105 (253)
T ss_dssp HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH----HHHHHCCSHHHHHHHHHHHHHHHHHC-HHHH
T ss_pred HHHHHHHHHhccH-HHHHHHhHHHHHHHHHHHhHHHHHHHHHHHH----HHHhhcccCchHHHHHHHHhHHHHhC-HHHH
Confidence 3445555555554 4666778888888887666665555555544 44433444445578899999998875 4668
Q ss_pred HHHHHHHHHhhc-CCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHh
Q 003081 437 QKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQL 515 (850)
Q Consensus 437 ~~li~~l~~~~~-~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~ 515 (850)
.+.++-+...|. +|+..|.-.+.+++.|++.+|.........++.++ .+++..=+-.+....+.+..+....+.|
T Consensus 106 ~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~sml----tskd~~Dkl~aLnFi~alGen~~~yv~P 181 (253)
T 2db0_A 106 KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSML----SSKNREDKLTALNFIEAMGENSFKYVNP 181 (253)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT----SCSSHHHHHHHHHHHHTCCTTTHHHHGG
T ss_pred HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHh----cCCChHHHHHHHHHHHHHhccCccccCc
Confidence 889999999885 78888999999999999999987766666555433 2333332333333334444443344455
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 003081 516 YLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSIST 589 (850)
Q Consensus 516 yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~ 589 (850)
|+| -+...|.|.+.-||.+|..+++.+|..- |.+..++-.-.+.+.+++...+.++-++|+.+..
T Consensus 182 fLp----rL~aLL~D~deiVRaSaVEtL~~lA~~n-----pklRkii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 182 FLP----RIINLLHDGDEIVRASAVEALVHLATLN-----DKLRKVVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp GHH----HHHGGGGCSSHHHHHHHHHHHHHHHTSC-----HHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred chH----HHHHHHcCcchhhhHHHHHHHHHHHHcC-----HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 554 5556788999999999999999999753 3355566667788899998899999999988864
No 74
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.44 E-value=0.00017 Score=82.16 Aligned_cols=354 Identities=10% Similarity=-0.002 Sum_probs=192.2
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhccc
Q 003081 159 FDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTL 238 (850)
Q Consensus 159 l~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~ 238 (850)
++.+...+.+.++.+|..|+.+|..+..+.+.-...=.-...++.+.+++.+..+.++..|..++..++.. .+
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~-----~~-- 76 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR-----ST-- 76 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS-----CH--
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-----CH--
Confidence 56677778788899999999999999865442121111235678888889888888988876665555421 00
Q ss_pred CcchhHHhHH-HHhHHHHhhccCC-CchhHHHHHHHHHHHHHHHhcCccccc-chHHHHHHHHHhccc--------cchh
Q 003081 239 TEISDARQSM-DIVLPFLLAEGIL-SKVDSISKASIGVVMKLVKGAGIAIRP-HLSDLVSCMLESLSS--------LEDQ 307 (850)
Q Consensus 239 ~~~~~~~~~l-~~lLP~Ll~~gL~-s~~~evr~~a~~~L~~la~~~g~~l~P-~lp~Lvp~LL~~Ls~--------~ep~ 307 (850)
.....+. .-.+|.|+. -|. +..++++..++.+|.+|+.. +..+. .+...+|.|++.+.. ..+.
T Consensus 77 ---~~k~~i~~~G~i~~Lv~-lL~~~~~~~~~~~a~~aL~nLa~~--~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~ 150 (457)
T 1xm9_A 77 ---TNKLETRRQNGIREAVS-LLRRTGNAEIQKQLTGLLWNLSST--DELKEELIADALPVLADRVIIPFSGWCDGNSNM 150 (457)
T ss_dssp ---HHHHHHHHTTCHHHHHH-HHTTCCCHHHHHHHHHHHHHHHTS--SSTHHHHHHHHHHHHHHHTTHHHHTCC------
T ss_pred ---HHHHHHHHcCCHHHHHH-HHhhCCCHHHHHHHHHHHHHHhcC--HHhHHHHHhccHHHHHHHHhccccccccCccch
Confidence 0011121 234666663 234 45789999999999999975 33333 233678888888831 1000
Q ss_pred hhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChh---h-H--hhHHHHHHHHHhcc-----CCCchHh
Q 003081 308 GLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTE---S-L--DQLVPHLARLVRSG-----IGLNTRV 376 (850)
Q Consensus 308 ~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~---~-l--~~lvp~L~~~lk~~-----~~~~tr~ 376 (850)
.. . . ...+-.|.. ..++..+... .+ . . +..+|.|...+++. .+...+.
T Consensus 151 ~~----e-~-------~~~~v~~~a-------~~aL~nLs~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e 209 (457)
T 1xm9_A 151 SR----E-V-------VDPEVFFNA-------TGCLRNLSSA--DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVE 209 (457)
T ss_dssp --------C-------CCHHHHHHH-------HHHHHHHTTS--HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHH
T ss_pred hc----c-c-------ccHHHHHHH-------HHHHHHHccC--HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHH
Confidence 00 0 0 000001100 0112211111 00 0 1 13556666666531 1222333
Q ss_pred hHHHHHHHHHHHhc--------------------------------------------------ccccc-hHHHHHHHHH
Q 003081 377 GVASFISLLVQKIG--------------------------------------------------MDIKP-YTSMLLRLLF 405 (850)
Q Consensus 377 ~a~~~l~~L~~~~~--------------------------------------------------~~~~p-y~~~lL~~Ll 405 (850)
.|+.++..|+.+.. ....- +-...++.++
T Consensus 210 ~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~ 289 (457)
T 1xm9_A 210 NCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYL 289 (457)
T ss_dssp HHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHH
T ss_pred HHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHH
Confidence 34333333321100 00000 1124566677
Q ss_pred HhhhhcCcHHHHHHHHHHHHHHhhhCCHH--HH-------HHHHHHHHHhhc-CCchhhHHHHHHHHHHHhhchhhhhhh
Q 003081 406 PVVKEEKSAAAKRAFASACASVLKYATPS--QA-------QKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGY 475 (850)
Q Consensus 406 ~~l~~D~n~~Vr~~~a~alg~L~~~~~~~--~v-------~~li~~l~~~~~-~d~~~r~~~~~~l~al~~~~~~~f~~~ 475 (850)
..+....++.+++.++.+++.++....+. .+ ...++.+.+++. ++++.+..++.++..++... +.-...
T Consensus 290 ~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~-~~~~~i 368 (457)
T 1xm9_A 290 NLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP-LLHRVM 368 (457)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG-GGHHHH
T ss_pred HHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH-HHHHHH
Confidence 77744567899999999999998755431 12 134667777775 46667778888888887632 211122
Q ss_pred HhhHhHHHHHHhcCC------chHHHHHHHHHHHHhcCCChhhHH-hhHHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHH
Q 003081 476 HAVIVPVIFISRFED------DKYVSDLFEELWEENTSGDRVTLQ-LYLGEIVSLICEGIASS-SWSSKRKSAKAICKLG 547 (850)
Q Consensus 476 ~~~vlP~l~~~~~d~------~~~v~~~~~~v~~~l~~~~~~~i~-~yl~eIl~ll~~~L~d~-s~~vr~~aa~alg~la 547 (850)
....+|.+....... ++++.......+..+..+.....+ ..-...++.+...+.+. +..+++.|+..|..+.
T Consensus 369 ~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 369 GNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 234555544333222 234544444555555544322111 11134567777777888 8899999988887554
No 75
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.43 E-value=3.4e-06 Score=84.83 Aligned_cols=178 Identities=12% Similarity=0.099 Sum_probs=120.1
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHH-HHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhH
Q 003081 117 LIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLD-LIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGK 195 (850)
Q Consensus 117 lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~-~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~ 195 (850)
.+|.|...+.++++.||..++.+...+............+ ..++.|+..+.+.++.+|+.++.+|+++..+.+. ...
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~--~~~ 90 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE--QIQ 90 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH--HHH
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH--HHH
Confidence 5677777889999999999999998888554433333332 4788999999999999999999999999865431 111
Q ss_pred HH--HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHH-HHhHHHHhhccCCCchhHHHHHHH
Q 003081 196 HL--RRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSM-DIVLPFLLAEGILSKVDSISKASI 272 (850)
Q Consensus 196 ~L--~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l-~~lLP~Ll~~gL~s~~~evr~~a~ 272 (850)
.+ ...++.+..++++.++.||..|..++..++.. .......++ ..++|.|+. -+.+++.++|..++
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~----------~~~~~~~~~~~~~i~~L~~-ll~~~~~~v~~~a~ 159 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASG----------GNEQIQAVIDAGALPALVQ-LLSSPNEQILQEAL 159 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS----------CHHHHHHHHHTTHHHHHHH-HTTCSCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcC----------CHHHHHHHHHcCcHHHHHH-HHcCCCHHHHHHHH
Confidence 11 24678888999999999999876555444310 001111122 235677663 35556789999999
Q ss_pred HHHHHHHHhcCccccc-chHHHHHHHHHhccccchh
Q 003081 273 GVVMKLVKGAGIAIRP-HLSDLVSCMLESLSSLEDQ 307 (850)
Q Consensus 273 ~~L~~la~~~g~~l~P-~lp~Lvp~LL~~Ls~~ep~ 307 (850)
.+|.+++......-.. .-...++.|.+.+.+..+.
T Consensus 160 ~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~ 195 (210)
T 4db6_A 160 WALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEK 195 (210)
T ss_dssp HHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHH
T ss_pred HHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHH
Confidence 9999998753221111 1124678888888754443
No 76
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.34 E-value=9.2e-05 Score=84.30 Aligned_cols=368 Identities=12% Similarity=0.081 Sum_probs=191.5
Q ss_pred HHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHH-HHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHH
Q 003081 118 IPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHL-DLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKH 196 (850)
Q Consensus 118 vp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~-~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~ 196 (850)
+|.|.++...+++.+|..+..+...+..+....-.... .-.+|.|+..+.+++..+++.|+.||.+|..+.+ +....
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~--~~k~~ 81 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRST--TNKLE 81 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH--HHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH--HHHHH
Confidence 67777777889999999988888777743321111112 2367888888888899999999999999987522 22221
Q ss_pred H--HHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccC--------CC---
Q 003081 197 L--RRIWTAAFRAMD-DIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGI--------LS--- 262 (850)
Q Consensus 197 L--~~i~~~l~~~ld-D~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL--------~s--- 262 (850)
+ ...++.+.+++. +.++.+++.|..+++.++. .+.. ...++...+|.|+. -+ .+
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~-----~~~~------~~~i~~g~i~~Lv~-ll~~~~s~~~~~~~~ 149 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSS-----TDEL------KEELIADALPVLAD-RVIIPFSGWCDGNSN 149 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-----SSST------HHHHHHHHHHHHHH-HTTHHHHTCC-----
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhc-----CHHh------HHHHHhccHHHHHH-HHhccccccccCccc
Confidence 1 245677888887 6678898887655554432 1111 11233455666653 12 11
Q ss_pred -----chhHHHHHHHHHHHHHHHhcCcccccch---HHHHHHHHHhccc------cchhh-hhHHH--Hhhhhcccchhh
Q 003081 263 -----KVDSISKASIGVVMKLVKGAGIAIRPHL---SDLVSCMLESLSS------LEDQG-LNYIE--LHAANAGIQTEK 325 (850)
Q Consensus 263 -----~~~evr~~a~~~L~~la~~~g~~l~P~l---p~Lvp~LL~~Ls~------~ep~~-~nyl~--~~a~~~~~~~d~ 325 (850)
...++...++.+|.+++.. +.-+..+ +.++|.|+..+.+ .+... -+.++ .+.. |.. +..
T Consensus 150 ~~~e~~~~~v~~~a~~aL~nLs~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs-~~~-~~~ 225 (457)
T 1xm9_A 150 MSREVVDPEVFFNATGCLRNLSSA--DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLS-YRL-DAE 225 (457)
T ss_dssp ----CCCHHHHHHHHHHHHHHTTS--HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHT-TTH-HHH
T ss_pred hhcccccHHHHHHHHHHHHHHccC--HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcc-cch-hcc
Confidence 1345666999999999865 2222222 2566667766653 11111 11111 0100 000 000
Q ss_pred hHHH--HHh-hccCC-cHHHHHHHHHhhc---------------------Chhh--HhhHHHHHHHHHhccCCCchHhhH
Q 003081 326 LENL--RIS-IAKGS-PMWDTLDLCINVV---------------------DTES--LDQLVPHLARLVRSGIGLNTRVGV 378 (850)
Q Consensus 326 id~~--r~~-~~~~s-~l~eal~~~~~~l---------------------d~~~--l~~lvp~L~~~lk~~~~~~tr~~a 378 (850)
++.. ... ..+.. ...+.. .|+... +.+. -...+|.+...++.......+..|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a 304 (457)
T 1xm9_A 226 VPTRYRQLEYNARNAYTEKSST-GCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEAC 304 (457)
T ss_dssp SCCHHHHHHHTC-----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred Ccchhhhccccccccccccccc-chhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHH
Confidence 0000 000 00000 000000 010000 0001 144678888888775444567788
Q ss_pred HHHHHHHHHHhcc---cc-cchH--HHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHH-HH-HHHHHHHHHhhc-C
Q 003081 379 ASFISLLVQKIGM---DI-KPYT--SMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPS-QA-QKLIEETAALHI-D 449 (850)
Q Consensus 379 ~~~l~~L~~~~~~---~~-~py~--~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~-~v-~~li~~l~~~~~-~ 449 (850)
+..|..|+...+. .+ +... ...++.++..+ .+.+..|++.++.++..+.+...-. .+ ...++.+.+++. .
T Consensus 305 ~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL-~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~ 383 (457)
T 1xm9_A 305 AGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLL-QSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSH 383 (457)
T ss_dssp HHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHT-TCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSC
T ss_pred HHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHH-hCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCC
Confidence 8888877643221 11 1111 24567888888 6788999999999999997632111 11 234666777775 2
Q ss_pred Cc------hhhHHHHHHHHHHHhhchhhhhhhH-hhHhHHHH-HHhcCCchHHHHHHHHHHHHh
Q 003081 450 DK------NSQISCAILLKSYSSVASDVLSGYH-AVIVPVIF-ISRFEDDKYVSDLFEELWEEN 505 (850)
Q Consensus 450 d~------~~r~~~~~~l~al~~~~~~~f~~~~-~~vlP~l~-~~~~d~~~~v~~~~~~v~~~l 505 (850)
++ +....++.++..+....++...... .-.+|.+. ...+...+.++..+..++..+
T Consensus 384 ~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~ 447 (457)
T 1xm9_A 384 TGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447 (457)
T ss_dssp CSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 22 1223444555555544443322221 12344333 233332556666655555443
No 77
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.31 E-value=5.2e-05 Score=81.04 Aligned_cols=177 Identities=11% Similarity=0.074 Sum_probs=116.4
Q ss_pred hhhhhHHhhHHHHHHHhh--hhhchhhhhHHHHHHh-hcCCCCHhHHHHHHHHHHHhccCChHHHHHHHH-HHHHHHHHh
Q 003081 90 NSKRGAAFGFSKIAKQAG--DALKPHLRLLIPKLVR-FQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLD-LIFDDLLIQ 165 (850)
Q Consensus 90 ~sr~gAa~gl~~I~~~~~--~~l~p~L~~lvp~L~r-~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~-~Il~~Ll~~ 165 (850)
..|..|+..|..+++... ..+ .-...+|.|+. ++.+|++.||..+..++..++.+.+......++ ..++.|+..
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~--~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADF--CQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHH--HHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHH--HHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 356677777777776432 111 11245677777 899999999999999999999876433332232 366777777
Q ss_pred hC-CCChhHHHHHHHHHHHHHccCCc--hhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcch
Q 003081 166 SG-SRLWRSREASCLSLADIIQGRKF--DQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEIS 242 (850)
Q Consensus 166 l~-~~~wRVReaa~~Al~~Ll~~~~~--~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~ 242 (850)
+. +++..+|+.|++||++++.+.+. ..+.. ...++.+.+++.+....||..|. +.++..+.. ++ .
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~--~ggi~~L~~lL~~~d~~v~~~A~---~aLs~L~~~--~~-----~ 200 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLR--LDGFSVLMRAMQQQVQKLKVKSA---FLLQNLLVG--HP-----E 200 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH--TTHHHHHHHHHHSSCHHHHHHHH---HHHHHHHHH--CG-----G
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHH--CCCHHHHHHHHcCCCHHHHHHHH---HHHHHHHhC--Ch-----H
Confidence 76 45678999999999999987543 12222 25788888888888888988765 444433311 11 1
Q ss_pred hHHhHH-HHhHHHHhhccCCCchhHHHHHHHHHHHHHHHh
Q 003081 243 DARQSM-DIVLPFLLAEGILSKVDSISKASIGVVMKLVKG 281 (850)
Q Consensus 243 ~~~~~l-~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~ 281 (850)
....++ ..++|.|+. -|.+++.+++..++.+|++|++.
T Consensus 201 ~~~~vv~~g~i~~Lv~-LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 201 HKGTLCSMGMVQQLVA-LVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp GHHHHHHTTHHHHHHH-HHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHH-HHcCCChhHHHHHHHHHHHHHhC
Confidence 111122 235565552 23456678999999999999876
No 78
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.24 E-value=1.2e-05 Score=85.19 Aligned_cols=188 Identities=8% Similarity=-0.011 Sum_probs=125.9
Q ss_pred hccchhhhhhhhHHhhHHHHHHHhh-----hhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCC------hHHH
Q 003081 83 ANYQVSLNSKRGAAFGFSKIAKQAG-----DALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADP------KRTI 151 (850)
Q Consensus 83 a~~~~~w~sr~gAa~gl~~I~~~~~-----~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~------~~~i 151 (850)
..|. .|..|..|.-.+..++.... +...+.+..+.+.+-.+..|.|..|+..+..++..++... ....
T Consensus 18 l~sk-~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~ 96 (278)
T 4ffb_C 18 LTYK-LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHN 96 (278)
T ss_dssp TTCS-SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHH
T ss_pred cccC-cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchh
Confidence 3344 59999999988888776542 2222335566777777789999999999999999887532 1223
Q ss_pred HHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH
Q 003081 152 DEHLDLIFDDLLIQ-SGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLT 230 (850)
Q Consensus 152 ~~~~~~Il~~Ll~~-l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~ 230 (850)
..+...+++.|+.. +++...++|+.+..++..+++..... ..++..+...+....+.||.++...+..+.
T Consensus 97 ~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~------~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l--- 167 (278)
T 4ffb_C 97 ITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI------TQSVELVIPFFEKKLPKLIAAAANCVYELM--- 167 (278)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS------HHHHHHHGGGGGCSCHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHhccCHHHHHHHHHHHHHHH---
Confidence 45668889998875 78988999999999998888653321 233444556678888999988754444332
Q ss_pred HHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcc
Q 003081 231 IRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIA 285 (850)
Q Consensus 231 ~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~ 285 (850)
+.+... .......+..+++.+. +.+.+.+++||..+..+++.+.+..|..
T Consensus 168 -~~fg~~---~~~~k~~l~~i~~~l~-k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 168 -AAFGLT---NVNVQTFLPELLKHVP-QLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp -HHHTTT---TCCHHHHHHHHGGGHH-HHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred -HHhCCC---cCCchhHHHHHHHHHH-HHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 221111 1113345566666654 4567889999999999999999888854
No 79
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.12 E-value=0.00013 Score=88.06 Aligned_cols=279 Identities=13% Similarity=0.100 Sum_probs=163.5
Q ss_pred hhhhhhHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCC--------HhHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 003081 89 LNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPD--------KNVQDAMAHIWKSLVADPKRTIDEHLDLIFD 160 (850)
Q Consensus 89 w~sr~gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~--------~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~ 160 (850)
-..|-||++|+|.|..+.++. .+..|..+..+++ +.||..++--.+...-.+. + +.+++
T Consensus 409 ~~ik~GAllaLGli~ag~~~~-------~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~---~---eev~e 475 (963)
T 4ady_A 409 RFIKGGSLYGLGLIYAGFGRD-------TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA---N---IEVYE 475 (963)
T ss_dssp HHHHHHHHHHHHHHTTTTTHH-------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC---C---HHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcHH-------HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC---C---HHHHH
Confidence 467889999999999887642 2333344445555 7899888776666543332 1 13344
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCc
Q 003081 161 DLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTE 240 (850)
Q Consensus 161 ~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~ 240 (850)
.|...+.+.+.-+|++++.|+|-+.-|.+-++... .|+..+ ++|.++.||..+. -.|+.+.. +.
T Consensus 476 ~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~---~LL~~~---~e~~~e~vrR~aa---lgLGll~~-------g~ 539 (963)
T 4ady_A 476 ALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIH---DMFTYS---QETQHGNITRGLA---VGLALINY-------GR 539 (963)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHH---HHHHHH---HHCSCHHHHHHHH---HHHHHHTT-------TC
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHH---HHHHHH---hccCcHHHHHHHH---HHHHhhhC-------CC
Confidence 44555555556789999999999877766544333 333332 3567788887754 33433221 11
Q ss_pred chhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhhhcc
Q 003081 241 ISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAG 320 (850)
Q Consensus 241 ~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~ 320 (850)
. +..+.++-.|. .+.++-+|..++.+++-..-..|. +..|..||..+.+.
T Consensus 540 ~----e~~~~li~~L~----~~~dp~vRygaa~alglAyaGTGn------~~aIq~LL~~~~~d---------------- 589 (963)
T 4ady_A 540 Q----ELADDLITKML----ASDESLLRYGGAFTIALAYAGTGN------NSAVKRLLHVAVSD---------------- 589 (963)
T ss_dssp G----GGGHHHHHHHH----HCSCHHHHHHHHHHHHHHTTTSCC------HHHHHHHHHHHHHC----------------
T ss_pred h----HHHHHHHHHHH----hCCCHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHhccC----------------
Confidence 1 12344444443 235678887777766544333344 35566666655321
Q ss_pred cchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHH
Q 003081 321 IQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSML 400 (850)
Q Consensus 321 ~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~l 400 (850)
.-+..|..++ -++..+. +++ ++.+|++.+.+....+...|.+++-.++.++.-. | ..++
T Consensus 590 ----~~d~VRraAV------iaLGlI~--~g~---~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn-----~-~~~a 648 (963)
T 4ady_A 590 ----SNDDVRRAAV------IALGFVL--LRD---YTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGK-----G-LQSA 648 (963)
T ss_dssp ----SCHHHHHHHH------HHHHHHT--SSS---CSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSS-----C-CHHH
T ss_pred ----CcHHHHHHHH------HHHHhhc--cCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCC-----C-cHHH
Confidence 1122332221 1232221 111 1346666665555446678888888887664221 2 2566
Q ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHH---HHHHHHHHHHHhhc
Q 003081 401 LRLLFPVVKEEKSAAAKRAFASACASVLKYATPS---QAQKLIEETAALHI 448 (850)
Q Consensus 401 L~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~---~v~~li~~l~~~~~ 448 (850)
+..|.+.. .|.+..||+.++.|+|.+.....+. .+..+...+.+.|.
T Consensus 649 id~L~~L~-~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~ 698 (963)
T 4ady_A 649 IDVLDPLT-KDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVIT 698 (963)
T ss_dssp HHHHHHHH-TCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHc-cCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHh
Confidence 77777777 7999999999999999998765554 56666666666664
No 80
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.11 E-value=0.00039 Score=72.43 Aligned_cols=188 Identities=16% Similarity=0.209 Sum_probs=121.3
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHH-HHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 003081 161 DLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTA-AFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLT 239 (850)
Q Consensus 161 ~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~-l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~ 239 (850)
++...+-+++|+.|.+++..|.+.++..+ +.+...+.-++.- .+|. -|.+..|-..+..++..+...+.+. + +.-
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~-~~~~~~lDll~kw~~lr~-~d~N~~v~~~~L~~L~~l~~~l~~~-~-y~~ 125 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSP-RSLLSNSDLLLKWCTLRF-FETNPAALIKVLELCKVIVELIRDT-E-TPM 125 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCH-HHHHHTHHHHHHHHHHHT-TSCCHHHHHHHHHHHHHHHHHHHHT-T-CCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhCh-HHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHhc-c-ccc
Confidence 45667778899999999998888776533 3333333333332 2233 3667777666666666554443221 0 110
Q ss_pred cchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhhhc
Q 003081 240 EISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANA 319 (850)
Q Consensus 240 ~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~ 319 (850)
...-...++|.|+++ +.+..+.+|..+-.++..+.+.+++
T Consensus 126 ----~~~ea~~~lP~LveK-lGd~k~~vR~~~r~il~~l~~v~~~----------------------------------- 165 (266)
T 2of3_A 126 ----SQEEVSAFVPYLLLK-TGEAKDNMRTSVRDIVNVLSDVVGP----------------------------------- 165 (266)
T ss_dssp ----CHHHHHHHHHHHHHG-GGCSSHHHHHHHHHHHHHHHHHHCH-----------------------------------
T ss_pred ----hHHHHHHHHHHHHHH-hCCChHHHHHHHHHHHHHHHHHCCH-----------------------------------
Confidence 111235678888864 5566677777766666554322111
Q ss_pred ccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHH
Q 003081 320 GIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSM 399 (850)
Q Consensus 320 ~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~ 399 (850)
..+.+.+.+.+++. .+.+|.+|+..+..+..++|.. | .+
T Consensus 166 ------------------------------------~~v~~~l~~g~ksK-N~R~R~e~l~~l~~li~~~G~~--~--~~ 204 (266)
T 2of3_A 166 ------------------------------------LKMTPMLLDALKSK-NARQRSECLLVIEYYITNAGIS--P--LK 204 (266)
T ss_dssp ------------------------------------HHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHCSG--G--GG
T ss_pred ------------------------------------HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCC--c--cc
Confidence 23455556666554 5788999999999999999876 2 34
Q ss_pred HH---HHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHH
Q 003081 400 LL---RLLFPVVKEEKSAAAKRAFASACASVLKYATPS 434 (850)
Q Consensus 400 lL---~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~ 434 (850)
.+ +.+.+.+ +|++..||+++..++..+.+..++.
T Consensus 205 ~l~~~~~ia~ll-~D~d~~VR~aAl~~lve~y~~~Gd~ 241 (266)
T 2of3_A 205 SLSVEKTVAPFV-GDKDVNVRNAAINVLVACFKFEGDQ 241 (266)
T ss_dssp GGCHHHHHGGGG-GCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred cccchHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 56 8888888 7999999999999998887776654
No 81
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.04 E-value=0.00094 Score=75.60 Aligned_cols=214 Identities=8% Similarity=-0.031 Sum_probs=134.6
Q ss_pred HhhHHHHHHHHHHHhcccccch---HHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHH---HH--HHHHHHHHh
Q 003081 375 RVGVASFISLLVQKIGMDIKPY---TSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQ---AQ--KLIEETAAL 446 (850)
Q Consensus 375 r~~a~~~l~~L~~~~~~~~~py---~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~---v~--~li~~l~~~ 446 (850)
+..++.+|..|+.... .-+.. .+..++.|+..| ...++.+++.++.++++|.....++. +. .-++.+.++
T Consensus 217 ~~~Aa~aL~nLa~~~~-~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~l 294 (458)
T 3nmz_A 217 RRYAGMALTNLTFGDV-ANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMEC 294 (458)
T ss_dssp HHHHHHHHHHHHTTCH-HHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCc-ccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHH
Confidence 5567778877764322 12222 245688899998 57889999999999999876433332 22 346777776
Q ss_pred hc--CCchhhHHHHHHHHHHHhhchhhhhhh--HhhHhHHHHHHhcCCch----HHHHHHHHHHHHhcC---CChhhHHh
Q 003081 447 HI--DDKNSQISCAILLKSYSSVASDVLSGY--HAVIVPVIFISRFEDDK----YVSDLFEELWEENTS---GDRVTLQL 515 (850)
Q Consensus 447 ~~--~d~~~r~~~~~~l~al~~~~~~~f~~~--~~~vlP~l~~~~~d~~~----~v~~~~~~v~~~l~~---~~~~~i~~ 515 (850)
+. .++..+..+..++..|+..+.+.-... ..-.+|.+........+ .++.....++..++. +.......
T Consensus 295 Ll~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~ 374 (458)
T 3nmz_A 295 ALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI 374 (458)
T ss_dssp HTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 43 355566677778888876443321122 13356665544333222 366555555544442 32222222
Q ss_pred hH-HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhH--HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhc
Q 003081 516 YL-GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYH--HVLLESIMKEVPGRLWEGKDALLYAIGSISTSC 591 (850)
Q Consensus 516 yl-~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l--~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~ 591 (850)
.. ...++.+...|.+.+..++..|+.+|+.++... ......+ .-.+|.|.+-+...+...|+....||..++...
T Consensus 375 i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 375 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN-PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSC-HHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 11 235677888899999999999999999998421 1111221 346889999898888889999999999998643
No 82
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=97.98 E-value=0.0072 Score=70.19 Aligned_cols=354 Identities=12% Similarity=0.058 Sum_probs=188.7
Q ss_pred HhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcC---cccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhh
Q 003081 250 IVLPFLLAEGILSKVDSISKASIGVVMKLVKGAG---IAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKL 326 (850)
Q Consensus 250 ~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g---~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~i 326 (850)
.-+|.|+. .|.+++++++..++.+|..++.... ..+. -...||.|++.|++..+.+.....+...+.....
T Consensus 48 ~~i~~LV~-~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~--~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~--- 121 (584)
T 3l6x_A 48 PELPEVIA-MLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVR--KLKGIPVLVGLLDHPKKEVHLGACGALKNISFGR--- 121 (584)
T ss_dssp CCHHHHHH-HTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH--HTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSS---
T ss_pred ccHHHHHH-HHCCCCHHHHHHHHHHHHHHHcCChHHHHHHH--HcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccC---
Confidence 34666663 4566778999999999999986321 1111 1245799999998765544322211111110000
Q ss_pred HHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccc-hHHHHHHHHH
Q 003081 327 ENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKP-YTSMLLRLLF 405 (850)
Q Consensus 327 d~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~p-y~~~lL~~Ll 405 (850)
+..-..++ + -..-+|.|++++++......+..++.+|..|+... ..+. ....-++.|+
T Consensus 122 ---------~~~nk~~I---~-------~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~--~~k~~I~~~alp~Lv 180 (584)
T 3l6x_A 122 ---------DQDNKIAI---K-------NCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD--SIKMEIVDHALHALT 180 (584)
T ss_dssp ---------CHHHHHHH---H-------HTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG--GGHHHHHHHTHHHHH
T ss_pred ---------CHHHHHHH---H-------HcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc--hhhHHHHhccHHHHH
Confidence 00000000 0 02357888888886433445667777787776421 1111 1111233333
Q ss_pred Hhhh-----------------hcCcHHHHHHHHHHHHHHhhhCCH--HHHH---HHHHHHHHhhc-------CCchhhHH
Q 003081 406 PVVK-----------------EEKSAAAKRAFASACASVLKYATP--SQAQ---KLIEETAALHI-------DDKNSQIS 456 (850)
Q Consensus 406 ~~l~-----------------~D~n~~Vr~~~a~alg~L~~~~~~--~~v~---~li~~l~~~~~-------~d~~~r~~ 456 (850)
..+. +..+..|++.++.++..|....++ ..+. .+++.|+..+. .+......
T Consensus 181 ~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~en 260 (584)
T 3l6x_A 181 DEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVEN 260 (584)
T ss_dssp HHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHH
T ss_pred HHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHH
Confidence 3220 112468889998888888753322 1111 12333333321 12233444
Q ss_pred HHHHHHHHHhhchhh------h-------------------hh-hHhhHhHHHHHHh-cCCchHHHHHHHHHHHHhcCCC
Q 003081 457 CAILLKSYSSVASDV------L-------------------SG-YHAVIVPVIFISR-FEDDKYVSDLFEELWEENTSGD 509 (850)
Q Consensus 457 ~~~~l~al~~~~~~~------f-------------------~~-~~~~vlP~l~~~~-~d~~~~v~~~~~~v~~~l~~~~ 509 (850)
|.-++..++...... | .. +...++|.++... +...+.+++.+...+..++.+.
T Consensus 261 av~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~ 340 (584)
T 3l6x_A 261 CVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGR 340 (584)
T ss_dssp HHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCC
Confidence 555555555332100 1 00 1122344433222 3346778888777777776543
Q ss_pred h---hhHHhhH--HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCC--------Chhh
Q 003081 510 R---VTLQLYL--GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGR--------LWEG 576 (850)
Q Consensus 510 ~---~~i~~yl--~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r--------~~~g 576 (850)
. ..++..+ ...++.|...|.+++..++..|+.+|+.|+...... ...-...+|.|++-|... ..+.
T Consensus 341 ~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v 419 (584)
T 3l6x_A 341 WTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDT 419 (584)
T ss_dssp SHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHH
T ss_pred ccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHH-HHHHhCCHHHHHHHhcCCcccccccchHHH
Confidence 1 1222222 356888999999999999999999999999643221 111356788898888543 2344
Q ss_pred HHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhc--CHHHHHHHHHHHHHHHH
Q 003081 577 KDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKK--IKKYREAAFSCLEQVIK 634 (850)
Q Consensus 577 Ke~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~--~~~~R~~Al~~Lg~l~~ 634 (850)
...++.+|+.++.+....-.. -.-...++.++.-++.. .+..++.|..+|..+..
T Consensus 420 ~~~a~~tL~NL~a~~~~~~~~---I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 420 VISILNTINEVIAENLEAAKK---LRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH---HHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHH---HHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 566667776666432211100 00112366666666554 78899999999888763
No 83
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=97.96 E-value=0.0027 Score=71.82 Aligned_cols=231 Identities=11% Similarity=-0.036 Sum_probs=122.1
Q ss_pred chhHHHHHHHHHHHHHHHhcCcccccc---hHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcH
Q 003081 263 KVDSISKASIGVVMKLVKGAGIAIRPH---LSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPM 339 (850)
Q Consensus 263 ~~~evr~~a~~~L~~la~~~g~~l~P~---lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l 339 (850)
...+++..++.+|.+|+..... -+.. ....||.|++.|.+..+++.....+...+.....+ +..|
T Consensus 212 ~~~~l~~~Aa~aL~nLa~~~~~-~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~--~~~k--------- 279 (458)
T 3nmz_A 212 YSITLRRYAGMALTNLTFGDVA-NKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD--VNSK--------- 279 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHH-HHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCC--HHHH---------
T ss_pred CCHHHHHHHHHHHHHHhCCCcc-cHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC--HHHH---------
Confidence 3577899999999999865321 1222 24679999999987655543322222211100000 0000
Q ss_pred HHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchH--HHHHHHHHHhhhhcCcH---
Q 003081 340 WDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYT--SMLLRLLFPVVKEEKSA--- 414 (850)
Q Consensus 340 ~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~--~~lL~~Ll~~l~~D~n~--- 414 (850)
..+.. ...+|.|++.+........+..++.++..|+......=.... ...++.|...+. ..+.
T Consensus 280 -----~~I~~------~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~-~~~~~~~ 347 (458)
T 3nmz_A 280 -----KTLRE------VGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLT-YRSQTNT 347 (458)
T ss_dssp -----HHHHH------TTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTT-CCCSSST
T ss_pred -----HHHHH------cCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhc-CCCCcch
Confidence 00000 135777888764432345566777888887763321111111 235556666662 2221
Q ss_pred -HHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchH
Q 003081 415 -AAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKY 493 (850)
Q Consensus 415 -~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~ 493 (850)
.+++.++.++..+.... ..+++.|.. +. ..-.+|.+.......+..
T Consensus 348 ~~v~~~A~~aL~nLs~~~----------------a~~~~~~~~-------i~----------~~G~i~~Lv~LL~~~~~~ 394 (458)
T 3nmz_A 348 LAIIESGGGILRNVSSLI----------------ATNEDHRQI-------LR----------ENNCLQTLLQHLKSHSLT 394 (458)
T ss_dssp THHHHHHHHHHHHHHHHH----------------TTCHHHHHH-------HH----------HTTHHHHHHHHSSCSCHH
T ss_pred HHHHHHHHHHHHHHHhcc----------------cCCHHHHHH-------HH----------HcccHHHHHHHHcCCChH
Confidence 35555555554443210 001111100 10 011345544444555666
Q ss_pred HHHHHHHHHHHhcCCChhhHHhhH-HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh
Q 003081 494 VSDLFEELWEENTSGDRVTLQLYL-GEIVSLICEGIASSSWSSKRKSAKAICKLGEIL 550 (850)
Q Consensus 494 v~~~~~~v~~~l~~~~~~~i~~yl-~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~ 550 (850)
++..+..++..++.+......... ...++.+...+.+.+..+|..|+.+|..|+..-
T Consensus 395 v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 395 IVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 777766666666644333222222 346788888999999999999999999998653
No 84
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.94 E-value=0.0028 Score=60.98 Aligned_cols=216 Identities=12% Similarity=0.098 Sum_probs=152.4
Q ss_pred hHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhcCCchh--hHHHHHHHHHHHhhchhhhh
Q 003081 396 YTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNS--QISCAILLKSYSSVASDVLS 473 (850)
Q Consensus 396 y~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~~d~~~--r~~~~~~l~al~~~~~~~f~ 473 (850)
|-..++..++..| +|.--+|++++.+.+..+.+..+ +...+++.++..++..++.. -+..+.+++.+++..|+..
T Consensus 29 ~d~~~l~~lI~~L-DDDlwtV~kNAl~vi~~i~~~~~-el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v- 105 (253)
T 2db0_A 29 YDESVLKKLIELL-DDDLWTVVKNAISIIMVIAKTRE-DLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV- 105 (253)
T ss_dssp HCHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHH-
T ss_pred hhHHHHHHHHHHh-ccHHHHHHHhHHHHHHHHHHHhH-HHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHH-
Confidence 5667899999999 88889999999888887776543 45667777777776433332 3566778888888888754
Q ss_pred hhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcc
Q 003081 474 GYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGES 553 (850)
Q Consensus 474 ~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~ 553 (850)
..++|++|..-.-.++..+-...-+++++....+. .++.+..-+...++|++..=|-.|..-++. +|.+
T Consensus 106 ---~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~----l~~~v~rdi~smltskd~~Dkl~aLnFi~a----lGen 174 (253)
T 2db0_A 106 ---KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM----LMASIVRDFMSMLSSKNREDKLTALNFIEA----MGEN 174 (253)
T ss_dssp ---HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHTSCSSHHHHHHHHHHHHT----CCTT
T ss_pred ---HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCChHHHHHHHHHHHH----Hhcc
Confidence 45788888654445777776666677776554433 244556666667889997777766665554 4443
Q ss_pred hhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 003081 554 LSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVI 633 (850)
Q Consensus 554 l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~ 633 (850)
=..|..+.+|-|..-|.+++.-+|....++|+.++.... -+..++...+.+.++++..+....-..|++++
T Consensus 175 ~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~np---------klRkii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 175 SFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLND---------KLRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp THHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH---------HHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred CccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCH---------HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 334666677777888889998999999999999986432 24556666677888888887777777777765
Q ss_pred H
Q 003081 634 K 634 (850)
Q Consensus 634 ~ 634 (850)
-
T Consensus 246 l 246 (253)
T 2db0_A 246 L 246 (253)
T ss_dssp H
T ss_pred H
Confidence 3
No 85
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.91 E-value=0.00044 Score=72.02 Aligned_cols=180 Identities=12% Similarity=0.102 Sum_probs=128.8
Q ss_pred CCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCC---hhhHHhh-HHHHHHHH
Q 003081 449 DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGD---RVTLQLY-LGEIVSLI 524 (850)
Q Consensus 449 ~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~---~~~i~~y-l~eIl~ll 524 (850)
.|...|..+.+.+.......++.+-..++.+++.+-...++.+..|.....+++..+.... +..+..| ...++|.+
T Consensus 58 ~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~L 137 (266)
T 2of3_A 58 KDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYL 137 (266)
T ss_dssp SCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 4555566666666555555565555666666776544556666665544445444433211 1123455 36788999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCchH
Q 003081 525 CEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPF 604 (850)
Q Consensus 525 ~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~ 604 (850)
..-+.|+...+|..+...+..+...++. ..+++.+.+++++++|-.|+..++.++.+....+-. ..
T Consensus 138 veKlGd~k~~vR~~~r~il~~l~~v~~~------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~--------~~ 203 (266)
T 2of3_A 138 LLKTGEAKDNMRTSVRDIVNVLSDVVGP------LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS--------PL 203 (266)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHHHHHHCH------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG--------GG
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC--------cc
Confidence 9999999999999999999888876532 458899999999999999999999999998876532 12
Q ss_pred HHH---HHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCchhHH
Q 003081 605 AIV---DMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFN 643 (850)
Q Consensus 605 ~i~---~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~~~~~~~ 643 (850)
..+ |.+...+.+.+..+|.+|+.|+..+....++ .+..
T Consensus 204 ~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd-~v~k 244 (266)
T 2of3_A 204 KSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGD-QMWK 244 (266)
T ss_dssp GGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred ccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH-HHHH
Confidence 345 8888999999999999999999998887765 4443
No 86
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.91 E-value=0.00025 Score=75.75 Aligned_cols=151 Identities=12% Similarity=0.043 Sum_probs=107.7
Q ss_pred HHHHHHH-HhccchhhhhhhhHHhhHHHHHHHhhhhhchhh-hhHHHHHHhhcC-CCCHhHHHHHHHHHHHhccCChHHH
Q 003081 75 LIYKFMD-LANYQVSLNSKRGAAFGFSKIAKQAGDALKPHL-RLLIPKLVRFQY-DPDKNVQDAMAHIWKSLVADPKRTI 151 (850)
Q Consensus 75 lv~~fm~-la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L-~~lvp~L~r~~~-Dp~~~VR~a~~~iw~~Lv~d~~~~i 151 (850)
-++.|+. +..+. ...-|..|+.+++.|+....+.-+-.+ ...+|.|.+.+. ||++.||+.+..+...++.+.+...
T Consensus 82 ~l~~Lv~~lL~s~-~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~ 160 (296)
T 1xqr_A 82 GMHLLVGRYLEAG-AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGL 160 (296)
T ss_dssp HHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHH
Confidence 4677888 77664 357788999999999864322111111 146777777776 6799999999888888886654433
Q ss_pred HHHHH-HHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHH--HHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Q 003081 152 DEHLD-LIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLR--RIWTAAFRAMDDIKETVRTAGDKLCRSVTS 228 (850)
Q Consensus 152 ~~~~~-~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~--~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~ 228 (850)
....+ ..++.|...+.+.+.++|..+|+||.++..+. +....++. ..++.++.++.+....||+.|..++..+.+
T Consensus 161 ~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~--~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 161 LQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH--PEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT 238 (296)
T ss_dssp HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--hHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHh
Confidence 33332 47788888888889999999999999999873 22333332 477888888988888999988776666643
No 87
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.85 E-value=0.0014 Score=71.83 Aligned_cols=230 Identities=11% Similarity=0.044 Sum_probs=136.8
Q ss_pred CCHhHHHHHHHHHHHhccCChHHHHHH--HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHH--HHHHHH
Q 003081 128 PDKNVQDAMAHIWKSLVADPKRTIDEH--LDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHL--RRIWTA 203 (850)
Q Consensus 128 p~~~VR~a~~~iw~~Lv~d~~~~i~~~--~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L--~~i~~~ 203 (850)
+++.+|+.+..++..|..+....-... ..-.+|.|+..+.+.+..+|+.+|.||.+|..+... .....+ ...++.
T Consensus 96 ~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~-~~k~~i~~~G~Ip~ 174 (354)
T 3nmw_A 96 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADV-NSKKTLREVGSVKA 174 (354)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCH-HHHHHHHHTTHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCH-HHHHHHHHCCCHHH
Confidence 357889888888888876543211111 234689999999998999999999999999765221 121221 135677
Q ss_pred HHHH-hccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHH--HHhHHHHhhccCCCchh----HHHHHHHHHHH
Q 003081 204 AFRA-MDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSM--DIVLPFLLAEGILSKVD----SISKASIGVVM 276 (850)
Q Consensus 204 l~~~-ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l--~~lLP~Ll~~gL~s~~~----evr~~a~~~L~ 276 (850)
+.++ +....+.+++.|..+++.|+..+ +. ....+. ...+|.|+. -+.+..+ +++..++.+|.
T Consensus 175 Lv~lL~~~~~~~~~~~A~~aL~nLs~~~----~~------nk~~i~~~~Gai~~Lv~-lL~~~~~~~~~~v~~~A~~aL~ 243 (354)
T 3nmw_A 175 LMECALEVKKESTLKSVLSALWNLSAHC----TE------NKADICAVDGALAFLVG-TLTYRSQTNTLAIIESGGGILR 243 (354)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHTTC----HH------HHHHHHHSTTHHHHHHH-HTTCCCSSSCCHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHccC----hh------hhHHHHHhcCcHHHHHH-HhccCCCcccHHHHHHHHHHHH
Confidence 7775 44556788888777777765311 10 011122 346776663 1222221 58888888888
Q ss_pred HHHHhc-CcccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhH
Q 003081 277 KLVKGA-GIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESL 355 (850)
Q Consensus 277 ~la~~~-g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l 355 (850)
+++... +. + + .|.. +.+
T Consensus 244 nLs~~~a~~---------------------~-----------------~----~~~~-------------i~~------- 261 (354)
T 3nmw_A 244 NVSSLIATN---------------------E-----------------D----HRQI-------------LRE------- 261 (354)
T ss_dssp HHHHHHTTC---------------------H-----------------H----HHHH-------------HHT-------
T ss_pred HHHhhccCC---------------------H-----------------H----HHHH-------------HHH-------
Confidence 876310 10 0 0 0000 000
Q ss_pred hhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHH-HHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCH
Q 003081 356 DQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTS-MLLRLLFPVVKEEKSAAAKRAFASACASVLKYATP 433 (850)
Q Consensus 356 ~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~-~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~ 433 (850)
...+|.|++.++++ ....+..|+.+|..|+...........+ ..++.|...+ ...+..+++.++.++..+....+.
T Consensus 262 ~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL-~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 262 NNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLI-HSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp TTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTT-TCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred cCCHHHHHHHHcCC-ChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCCHH
Confidence 12467777777654 3445667788887775322211111111 3577778877 577889999999999888876543
No 88
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.82 E-value=6.2e-06 Score=76.85 Aligned_cols=117 Identities=14% Similarity=0.064 Sum_probs=79.0
Q ss_pred chHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHH
Q 003081 73 PDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTID 152 (850)
Q Consensus 73 p~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~ 152 (850)
|.-+..+..+.++. .|.-|..|+.+|+.+- + + -+|.|...+.||++.||..+..+...+-.
T Consensus 11 ~~~~~~l~~~L~~~-~~~vR~~A~~~L~~~~----~---~----~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADE-NKWVRRDVSTALSRMG----D---E----AFEPLLESLSNEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp ----------CCSS-CCCSSSSCCSSTTSCS----S---T----THHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred cccHHHHHHHhcCC-CHHHHHHHHHHHHHhC----c---h----HHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence 34555666666654 5888888888887542 1 1 14778888899999999999887766542
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHH
Q 003081 153 EHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKL 222 (850)
Q Consensus 153 ~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~ 222 (850)
+..++.|...+.|++|+||..++.||+.+-. ++.++.+...++|..+.||.+|..+
T Consensus 72 ---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~a 127 (131)
T 1te4_A 72 ---ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNY 127 (131)
T ss_dssp ---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 1235566666678999999999999998731 2456666777888889999988644
No 89
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.78 E-value=0.00044 Score=77.26 Aligned_cols=243 Identities=15% Similarity=0.129 Sum_probs=142.5
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCc----hhhhHHHHHHHHHHHHHh--c--------cCcHHHHHHHH
Q 003081 155 LDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKF----DQVGKHLRRIWTAAFRAM--D--------DIKETVRTAGD 220 (850)
Q Consensus 155 ~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~----~~l~~~L~~i~~~l~~~l--d--------D~k~~VR~aA~ 220 (850)
++ +.+.|+..+-|+.|.+|.+|+.||.+++...+. ....+. ++...++-++ | -.-.-||+++.
T Consensus 173 fq-fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~--DLAvRLLCVLALDRFGDYVSDqVVAPVRETaA 249 (800)
T 3oc3_A 173 LD-FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS--KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAA 249 (800)
T ss_dssp GG-TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT--THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHH
T ss_pred HH-HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH--HHHHHHHHHHHhccccccccCeeeeehHHHHH
Confidence 35 888899999999999999999999999973321 111111 4444444333 2 24456999987
Q ss_pred HHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHh
Q 003081 221 KLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLES 300 (850)
Q Consensus 221 ~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~ 300 (850)
.++..+ . ..++. .. ++-.|+ +++....|++|..++-.|--+ .++..-++.++|.++..
T Consensus 250 QtLGaL-~----hLp~e----------~~-IL~qLV-~~l~~~~WEVRHGGLLGLKYL-----~DLL~~Ld~Vv~aVL~G 307 (800)
T 3oc3_A 250 YLLSRI-Y----PLIGP----------ND-IIEQLV-GFLDSGDWQVQFSGLIALGYL-----KEFVEDKDGLCRKLVSL 307 (800)
T ss_dssp HHHHHH-T----TTSCS----------CC-HHHHHT-TGGGCSCHHHHHHHHHHHHHT-----GGGCCCHHHHHHHHHHH
T ss_pred HHHHHH-H----hCChh----------HH-HHHHHH-hhcCCCCeeehhhhHHHHHHH-----HHHHHHHHHHHHHHHhh
Confidence 555543 2 22211 11 233333 355667899999888777665 22222289999999999
Q ss_pred ccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCc-hHhhHH
Q 003081 301 LSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLN-TRVGVA 379 (850)
Q Consensus 301 Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~~~-tr~~a~ 379 (850)
|++.+.++ |..++ ++ +++....+.++.++..+-+.+.+--++. +.....
T Consensus 308 L~D~DDDV---------------------RAVAA------et---LiPIA~p~~l~~LL~iLWd~L~~LDDLSASTgSVM 357 (800)
T 3oc3_A 308 LSSPDEDI---------------------KLLSA------EL---LCHFPITDSLDLVLEKCWKNIESEELISVSKTSNL 357 (800)
T ss_dssp TTCSSHHH---------------------HHHHH------HH---HTTSCCSSTHHHHHHHHHHHHHTCCSCCTTHHHHH
T ss_pred cCCcccHH---------------------HHHHH------HH---hhhhcchhhHHHHHHHHHHHhhhhcccchhhHHHH
Confidence 98654333 32111 12 2222233345666666666665432222 233445
Q ss_pred HHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhh--cCCchhhHHH
Q 003081 380 SFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALH--IDDKNSQISC 457 (850)
Q Consensus 380 ~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~--~~d~~~r~~~ 457 (850)
+.+..|+..-...-.+ +.+++.+++.+ .+.-.+||+++..++-.++ ..+++..+.+.. .++++.+..+
T Consensus 358 dLLAkL~s~p~~a~~d--p~LVPRL~PFL-RHtITSVR~AVL~TL~tfL-------~~~~LRLIFQNILLE~neeIl~lS 427 (800)
T 3oc3_A 358 SLLTKIYRENPELSIP--PERLKDIFPCF-TSPVPEVRTSILNMVKNLS-------EESIDFLVAEVVLIEEKDEIREMA 427 (800)
T ss_dssp HHHHHHHHHCTTCCCC--SGGGGGTGGGG-TCSSHHHHHHHHHHTTTCC-------CHHHHHHHHHHHHHCSCHHHHHHH
T ss_pred HHHHHHHcCCcccccC--hHHHHHHHhhh-cCCcHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHhCCcHHHHHHH
Confidence 5666665543321111 27888899999 6899999999988876655 123333333322 2456666666
Q ss_pred HHHHH
Q 003081 458 AILLK 462 (850)
Q Consensus 458 ~~~l~ 462 (850)
..++.
T Consensus 428 ~~VWk 432 (800)
T 3oc3_A 428 IKLLK 432 (800)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66664
No 90
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.76 E-value=0.00017 Score=80.45 Aligned_cols=204 Identities=11% Similarity=0.100 Sum_probs=126.6
Q ss_pred hcCCc-hHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhh----hhhchhhhhHHHHHHh---------hcCCC-CHhHH
Q 003081 69 EMGQP-DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAG----DALKPHLRLLIPKLVR---------FQYDP-DKNVQ 133 (850)
Q Consensus 69 ~~g~p-~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~----~~l~p~L~~lvp~L~r---------~~~Dp-~~~VR 133 (850)
...|| + ++.++--.--++.|..|.|||+||-.|+..-| .. ...-..+.-+|+. |..|. ..-||
T Consensus 168 ~~eWPfq-fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~-~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVR 245 (800)
T 3oc3_A 168 PIENVLD-FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ-IRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVR 245 (800)
T ss_dssp CCCSGGG-TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC-CCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHH
T ss_pred CCCCHHH-HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee-ccccHHHHHHHHHHHHhccccccccCeeeeehH
Confidence 34566 5 44443322223469999999999999987653 11 1100044444442 45564 56799
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcH
Q 003081 134 DAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKE 213 (850)
Q Consensus 134 ~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~ 213 (850)
++++...+++ ...+.. -.++..++..+..+.|.||.++..++.-+ .+-+.. ++.+++.++..+.|..+
T Consensus 246 ETaAQtLGaL-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~DLL~~-Ld~Vv~aVL~GL~D~DD 313 (800)
T 3oc3_A 246 DAAAYLLSRI-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL-----KEFVED-KDGLCRKLVSLLSSPDE 313 (800)
T ss_dssp HHHHHHHHHH-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GGGCCC-HHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHH-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH-----HHHHHH-HHHHHHHHHhhcCCccc
Confidence 9999999988 443322 25666677788889999999999999877 222323 88999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHH
Q 003081 214 TVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDL 293 (850)
Q Consensus 214 ~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~L 293 (850)
.||..|..++.-++ . +.....++..+-..|.+ + ++-..-.+..++.|.+++.....+ ---|.+
T Consensus 314 DVRAVAAetLiPIA-------~-----p~~l~~LL~iLWd~L~~--L-DDLSASTgSVMdLLAkL~s~p~~a--~~dp~L 376 (800)
T 3oc3_A 314 DIKLLSAELLCHFP-------I-----TDSLDLVLEKCWKNIES--E-ELISVSKTSNLSLLTKIYRENPEL--SIPPER 376 (800)
T ss_dssp HHHHHHHHHHTTSC-------C-----SSTHHHHHHHHHHHHHT--C-CSCCTTHHHHHHHHHHHHHHCTTC--CCCSGG
T ss_pred HHHHHHHHHhhhhc-------c-----hhhHHHHHHHHHHHhhh--h-cccchhhHHHHHHHHHHHcCCccc--ccChHH
Confidence 99998754332221 1 12234456665555542 3 333333456677888887754321 111366
Q ss_pred HHHHHHhccc
Q 003081 294 VSCMLESLSS 303 (850)
Q Consensus 294 vp~LL~~Ls~ 303 (850)
+|.|..-+..
T Consensus 377 VPRL~PFLRH 386 (800)
T 3oc3_A 377 LKDIFPCFTS 386 (800)
T ss_dssp GGGTGGGGTC
T ss_pred HHHHHhhhcC
Confidence 6666655543
No 91
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.74 E-value=0.077 Score=62.98 Aligned_cols=228 Identities=13% Similarity=0.118 Sum_probs=139.7
Q ss_pred hHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccch-H-HHHHHHHHHhhhhcCcHH---HHHHHHHHHHHHhhhC
Q 003081 357 QLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPY-T-SMLLRLLFPVVKEEKSAA---AKRAFASACASVLKYA 431 (850)
Q Consensus 357 ~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py-~-~~lL~~Ll~~l~~D~n~~---Vr~~~a~alg~L~~~~ 431 (850)
..+|.|...+++. ...+|..++++|..|+.. ...+.. . ...++.|+..+. ..+.. +|..++.|+.++.-..
T Consensus 457 GvIp~Lv~Ll~S~-s~~~re~A~~aL~nLS~d--~~~R~~lvqqGal~~LL~lL~-s~~~~~~~~k~~AA~ALArLlis~ 532 (778)
T 3opb_A 457 ELISFLKREMHNL-SPNCKQQVVRIIYNITRS--KNFIPQLAQQGAVKIILEYLA-NKQDIGEPIRILGCRALTRMLIFT 532 (778)
T ss_dssp THHHHHHHHGGGS-CHHHHHHHHHHHHHHHTS--GGGHHHHHHTTHHHHHHHHTT-CC---CCHHHHHHHHHHHHHHHTS
T ss_pred cCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCHHHHHHHHh-cCCCcchHHHHHHHHHHHHHHhcC
Confidence 4788888887764 556788899999888643 122111 1 135667777773 33333 7999999999988654
Q ss_pred CHHHH------HHHHHHHHHhhcCCch---------------hhHHHHHHHHHHHhhc---hhhh-hhhHh--hHhHHHH
Q 003081 432 TPSQA------QKLIEETAALHIDDKN---------------SQISCAILLKSYSSVA---SDVL-SGYHA--VIVPVIF 484 (850)
Q Consensus 432 ~~~~v------~~li~~l~~~~~~d~~---------------~r~~~~~~l~al~~~~---~~~f-~~~~~--~vlP~l~ 484 (850)
.+..+ ..-++.|.+++..++. .+..+..++..++... ++.. ..... ..+|.+.
T Consensus 533 np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~ 612 (778)
T 3opb_A 533 NPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIE 612 (778)
T ss_dssp CHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHH
T ss_pred CHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHH
Confidence 44332 1456777777652111 1445666667777654 1222 22333 3678777
Q ss_pred HHhcCCchHHHHHHHHHHHHhcCCChhhH-HhhH----HH---HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhh
Q 003081 485 ISRFEDDKYVSDLFEELWEENTSGDRVTL-QLYL----GE---IVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSN 556 (850)
Q Consensus 485 ~~~~d~~~~v~~~~~~v~~~l~~~~~~~i-~~yl----~e---Il~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~ 556 (850)
..+.++.+.++..+.+++.-++.... .+ ..+. +. =++.+...+.+.+.++|+.|+.+|+.+....+.....
T Consensus 613 ~LL~s~n~~VrrAA~elI~NL~~~~e-~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ 691 (778)
T 3opb_A 613 NLMLDENVPLQRSTLELISNMMSHPL-TIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKE 691 (778)
T ss_dssp HGGGCSSHHHHHHHHHHHHHHHTSGG-GTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHhCCcH-HHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHH
Confidence 66777778899999999988876543 22 2221 11 2667888889999999999999999886533221111
Q ss_pred h--HHHHHHHHHHhcCC--CChhhHHHHHHHHHHHHH
Q 003081 557 Y--HHVLLESIMKEVPG--RLWEGKDALLYAIGSIST 589 (850)
Q Consensus 557 ~--l~~llp~L~~~L~~--r~~~gKe~vL~aL~~l~~ 589 (850)
. .+..++.+.+-+.+ ...+.+...+..+..++.
T Consensus 692 ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 692 LLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 1 12344444444433 445677777777777764
No 92
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.15 Score=60.43 Aligned_cols=229 Identities=10% Similarity=0.020 Sum_probs=134.9
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHH-----HHHHHHHHHhhcCC-c---hhhHHHHHHHHHHHhh-ch
Q 003081 400 LLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQA-----QKLIEETAALHIDD-K---NSQISCAILLKSYSSV-AS 469 (850)
Q Consensus 400 lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v-----~~li~~l~~~~~~d-~---~~r~~~~~~l~al~~~-~~ 469 (850)
.++.|...+ ...++.+|+.++.+++.+... .+.. +.-++.+...+... + ..|..++.++..+.-. .|
T Consensus 458 vIp~Lv~Ll-~S~s~~~re~A~~aL~nLS~d--~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np 534 (778)
T 3opb_A 458 LISFLKREM-HNLSPNCKQQVVRIIYNITRS--KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNP 534 (778)
T ss_dssp HHHHHHHHG-GGSCHHHHHHHHHHHHHHHTS--GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCH
T ss_pred CHHHHHHHH-cCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCH
Confidence 566666666 567899999999999999743 2222 23455666666432 1 2577777777776533 23
Q ss_pred hh-hhhhH-hhHhHHHHHHhc-CCch-----------H-H-HHHHHHHHHHhcCCCh---hhHH-hhHH--HHHHHHHHh
Q 003081 470 DV-LSGYH-AVIVPVIFISRF-EDDK-----------Y-V-SDLFEELWEENTSGDR---VTLQ-LYLG--EIVSLICEG 527 (850)
Q Consensus 470 ~~-f~~~~-~~vlP~l~~~~~-d~~~-----------~-v-~~~~~~v~~~l~~~~~---~~i~-~yl~--eIl~ll~~~ 527 (850)
.. |..+. ...+|.++.-.+ ++.. . . +..+...+.-++.... ..++ ..+. ..++.+...
T Consensus 535 ~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~L 614 (778)
T 3opb_A 535 GLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENL 614 (778)
T ss_dssp HHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHG
T ss_pred HHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHH
Confidence 32 32211 134444443322 1110 0 1 2222233344444321 1222 2333 377888888
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHhCc---chhhh-HHH---HHHHHHHhcCCCChhhHHHHHHHHHHHHHhccc---cccc
Q 003081 528 IASSSWSSKRKSAKAICKLGEILGE---SLSNY-HHV---LLESIMKEVPGRLWEGKDALLYAIGSISTSCHK---DISA 597 (850)
Q Consensus 528 L~d~s~~vr~~aa~alg~la~~~g~---~l~~~-l~~---llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~---~l~~ 597 (850)
+.+.+..+|++|+.+++.++..-.. .+... -+. =++.|+.-+...+.+.|..+..||+.+...... .+-.
T Consensus 615 L~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~ 694 (778)
T 3opb_A 615 MLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLT 694 (778)
T ss_dssp GGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTT
T ss_pred HhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 8899999999999999999963221 12111 111 267777777777889999999888877543321 1110
Q ss_pred CCCCchHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHc
Q 003081 598 EDPTTPFAIVDMVSSACRK--KIKKYREAAFSCLEQVIKAF 636 (850)
Q Consensus 598 ~~~~~~~~i~~~l~~e~~r--~~~~~R~~Al~~Lg~l~~~~ 636 (850)
....++.++.-+.+ .+..+|..++.++..++...
T Consensus 695 -----~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~ 730 (778)
T 3opb_A 695 -----KKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVI 730 (778)
T ss_dssp -----CHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred -----ccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence 12345566666666 78999999999999988743
No 93
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.61 E-value=1.2e-05 Score=74.82 Aligned_cols=120 Identities=14% Similarity=0.140 Sum_probs=76.1
Q ss_pred hhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhh
Q 003081 115 RLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVG 194 (850)
Q Consensus 115 ~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~ 194 (850)
+.-+|.|...+.||++.||..+......+- ++ . ++.|+..+.|++|.||..++.+++.+-.
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~-~~---------~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMG-DE---------A-FEPLLESLSNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCS-ST---------T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhC-ch---------H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence 345677777789999999998765443332 11 1 3677788889999999999999988631
Q ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHH
Q 003081 195 KHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGV 274 (850)
Q Consensus 195 ~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~ 274 (850)
+..++.+.+.++|.++.||.+|..++..++ + ...+|.|+. .+.++++.||..++.+
T Consensus 72 ---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~-------~-------------~~a~~~L~~-~l~d~~~~vr~~A~~a 127 (131)
T 1te4_A 72 ---ERAVEPLIKLLEDDSGFVRSGAARSLEQIG-------G-------------ERVRAAMEK-LAETGTGFARKVAVNY 127 (131)
T ss_dssp ---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC-------S-------------HHHHHHHHH-HTTSCCTHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------c-------------HHHHHHHHH-HHhCCCHHHHHHHHHH
Confidence 244666677788999999998864443321 1 123444442 3456778999999888
Q ss_pred HHH
Q 003081 275 VMK 277 (850)
Q Consensus 275 L~~ 277 (850)
|.+
T Consensus 128 L~~ 130 (131)
T 1te4_A 128 LET 130 (131)
T ss_dssp GGG
T ss_pred HHh
Confidence 764
No 94
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=97.57 E-value=0.016 Score=71.62 Aligned_cols=384 Identities=10% Similarity=0.030 Sum_probs=199.4
Q ss_pred hhcCCchHHHHHHHHh----ccchhhhhhhhHH-hhHHHHH-HHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHH
Q 003081 68 NEMGQPDLIYKFMDLA----NYQVSLNSKRGAA-FGFSKIA-KQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWK 141 (850)
Q Consensus 68 ~~~g~p~lv~~fm~la----~~~~~w~sr~gAa-~gl~~I~-~~~~~~l~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~ 141 (850)
+++-+|+.+.+|...- +.+..|+..+..+ .|+-.++ ...++. .++.+.|.+-+...|.+..-++++..|+.
T Consensus 457 ~~~~~~~~~~~l~~~l~qe~~~~~~F~~~~v~l~k~lf~l~~rn~~~~---~l~~l~~~~e~L~~~~dk~~qr~aaEi~a 533 (997)
T 1vsy_5 457 GHLLTREFLRDVTMNLVQDNETRGVFSSGNVSFFSLVILLISSGFCEL---NMSDLFELCESYYNKDDKASMIMSVEIVA 533 (997)
T ss_dssp HTTCCHHHHHHHHHHHHHTTTTTCCCCHHHHHHHHHHHHHHTTTTCCC---CGGGHHHHHHHTCCSSCHHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHHHHHHhhccccCccccchHHHHHHHHHHHhcccchh---hHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3444588888887653 1222245444443 3444444 333433 46667888888789999999999999999
Q ss_pred HhccCCh-------HHHHHHHHHHHHHHHH-hhCCC---ChhHHHHHHH---------HHHHHH---ccC---C----ch
Q 003081 142 SLVADPK-------RTIDEHLDLIFDDLLI-QSGSR---LWRSREASCL---------SLADII---QGR---K----FD 191 (850)
Q Consensus 142 ~Lv~d~~-------~~i~~~~~~Il~~Ll~-~l~~~---~wRVReaa~~---------Al~~Ll---~~~---~----~~ 191 (850)
.++...+ ..+.+++.++|..++. +++.. .|-.--+-+. -|.+.+ +.. + +.
T Consensus 534 Gll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR~~~L~e~l~~~~~~l~~~~~ssf~ 613 (997)
T 1vsy_5 534 GLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRRSKTFFCHFINADGMFDRESDAATH 613 (997)
T ss_dssp HHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGGCHHHHHHHTCCCCCCCCCSSCCCC
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhhhHHHHHHHHHhhcccCCCCCcHHH
Confidence 9986532 2355566777777777 46543 2543111111 122322 100 0 00
Q ss_pred -------------hhh---HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH-----------HHhhhccc---C--
Q 003081 192 -------------QVG---KHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLT-----------IRLCDVTL---T-- 239 (850)
Q Consensus 192 -------------~l~---~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~-----------~r~~~~~~---~-- 239 (850)
++. +.+..++..++ ++..-..||++.++++..+.... +..+.+.. +
T Consensus 614 ~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 691 (997)
T 1vsy_5 614 QTSKIYMLRSILMSMEFRAPDVGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLP 691 (997)
T ss_dssp CCSSHHHHHHHHHHHTTSSCCCHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCC
T ss_pred HHHHHHHHHHHHHHhccccccHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHhhccccccccCc
Confidence 000 01234444444 78888999999988777664332 11111110 0
Q ss_pred ---cchhHHhHHHHhHHHHhh-cc---CCCchhHH---HHHHHHHHH-HHHHhcC----cccccchHH-HHHHHHHhccc
Q 003081 240 ---EISDARQSMDIVLPFLLA-EG---ILSKVDSI---SKASIGVVM-KLVKGAG----IAIRPHLSD-LVSCMLESLSS 303 (850)
Q Consensus 240 ---~~~~~~~~l~~lLP~Ll~-~g---L~s~~~ev---r~~a~~~L~-~la~~~g----~~l~P~lp~-Lvp~LL~~Ls~ 303 (850)
.+....+.+..+...+-. ++ -.++.+.. ......|+. =|....+ ..+.||+|. ++|.++.....
T Consensus 692 ~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~ 771 (997)
T 1vsy_5 692 LKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKH 771 (997)
T ss_dssp SSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSC
T ss_pred cccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhc
Confidence 001111111112211110 01 00111011 111122222 2222222 236667766 66666655432
Q ss_pred cchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHH-hhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHH
Q 003081 304 LEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCI-NVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFI 382 (850)
Q Consensus 304 ~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~-~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l 382 (850)
.+. +++. ..++. -++..+. .....+.++.++..+.+..+.+..| .|..+..++
T Consensus 772 ~d~-----------------~eL~-------~~~a~-~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~l 825 (997)
T 1vsy_5 772 KDV-----------------CALA-------SLDPV-RLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFI 825 (997)
T ss_dssp SHH-----------------HHHT-------TCCSH-HHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHH
T ss_pred CcH-----------------HHHH-------hhHHH-HHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHH
Confidence 110 0110 00000 0111111 1123334455555555555534468 999998888
Q ss_pred HHHHHHhcccccch-HHHHHHHHHHhhhhcCc-HHHHHHHHHHHHHHhhhC-CHHHHHHHHHHHHHhhcC----------
Q 003081 383 SLLVQKIGMDIKPY-TSMLLRLLFPVVKEEKS-AAAKRAFASACASVLKYA-TPSQAQKLIEETAALHID---------- 449 (850)
Q Consensus 383 ~~L~~~~~~~~~py-~~~lL~~Ll~~l~~D~n-~~Vr~~~a~alg~L~~~~-~~~~v~~li~~l~~~~~~---------- 449 (850)
..+.-+.--.+.+. ...++..++..| .|++ .+||+.++.+++.++++. +...+..++..+.+.+..
T Consensus 826 q~~~f~n~f~l~~~~~~~i~~~v~~~L-~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~ 904 (997)
T 1vsy_5 826 QHFLSAELLQLTEEEKNKILEFVVSNL-YNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQK 904 (997)
T ss_dssp HHHHHHHTTTSCTTHHHHTHHHHTTTT-TCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHH
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccc
Confidence 77665543333333 347888888988 7999 999999999999999988 656666777666655522
Q ss_pred ---CchhhHHHHHHHHHHHhhchhhh--hhhHhhHhHHH
Q 003081 450 ---DKNSQISCAILLKSYSSVASDVL--SGYHAVIVPVI 483 (850)
Q Consensus 450 ---d~~~r~~~~~~l~al~~~~~~~f--~~~~~~vlP~l 483 (850)
+...|-++...++|+....|-.+ .++++.++..+
T Consensus 905 ~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~L 943 (997)
T 1vsy_5 905 LSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNL 943 (997)
T ss_dssp HHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHH
Confidence 11345677788888887766544 45665555433
No 95
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.49 E-value=0.038 Score=63.98 Aligned_cols=516 Identities=13% Similarity=0.134 Sum_probs=250.6
Q ss_pred hHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhchh-hhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChH---
Q 003081 74 DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPH-LRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKR--- 149 (850)
Q Consensus 74 ~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~p~-L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~--- 149 (850)
+-|.++.+=..+......||+|..||-+...++...+..+ ++.++-.|-+...|+ ..|+.........+..+...
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~-e~v~~~LetL~~l~~~~~~~~~~ 99 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDS-EIIGYALDTLYNIISNDEEEEVE 99 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCH-HHHHHHHHHHHHHHCCC------
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccH-HHHHHHHHHHHHHhCCCCccccc
Confidence 3456666655555567889999999988877776655544 667777776555333 55666555555555544321
Q ss_pred --------HHHHHH-------HHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHH---HHHHHHHHHhccC
Q 003081 150 --------TIDEHL-------DLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLR---RIWTAAFRAMDDI 211 (850)
Q Consensus 150 --------~i~~~~-------~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~---~i~~~l~~~ldD~ 211 (850)
.+..++ +.-++.|+..+.+.+..+|..+...|..|+.+++. .+..++- .-++.+..+++|.
T Consensus 100 ~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~-~~Q~~Il~~p~gi~~Lv~lL~d~ 178 (651)
T 3grl_A 100 ENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGP-QVQQIILVSPMGVSRLMDLLADS 178 (651)
T ss_dssp --------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHH-HHHHHHHHSTTHHHHHHGGGGCS
T ss_pred ccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcH-HHHHHHHhCcccHHHHHHHHhCc
Confidence 111122 34577888889999999999999999999988763 3444333 4678888999999
Q ss_pred cHHHHHHHHHHHHHHHHHH--HHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcC---ccc
Q 003081 212 KETVRTAGDKLCRSVTSLT--IRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAG---IAI 286 (850)
Q Consensus 212 k~~VR~aA~~~~~~L~~~~--~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g---~~l 286 (850)
++.+|..|..++..+.+-. ++.+ ......++.++-.+-..|.. +...|..-++.++.++.+.-. ..|
T Consensus 179 rE~iRneallLL~~Lt~~n~~iQkl-------VAFEnaFe~Lf~Ii~~Eg~~-~Ggivv~DCL~ll~nLLr~N~sNQ~~F 250 (651)
T 3grl_A 179 REVIRNDGVLLLQALTRSNGAIQKI-------VAFENAFERLLDIITEEGNS-DGGIVVEDCLILLQNLLKNNNSNQNFF 250 (651)
T ss_dssp SHHHHHHHHHHHHHHHTTCHHHHHH-------HHHTTHHHHHHHHHHHHTGG-GSHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHH-------HHHhccHHHHHHHHHhcCCC-ccchhHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999987777765311 0000 01222455555555445543 345677788888888886521 111
Q ss_pred c--cchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHH
Q 003081 287 R--PHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLAR 364 (850)
Q Consensus 287 ~--P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~ 364 (850)
+ .++|.|.| .+.. +++...|..++..+. --.++-+|.-..+++++..... +-..+ .-..+++.|++
T Consensus 251 rEt~~i~~L~~----LL~~-~~~~~~W~~Qk~~N~---~~~L~iIrlLv~~~~~~~~t~~-nQ~~~---~~~g~l~~Ll~ 318 (651)
T 3grl_A 251 KEGSYIQRMKP----WFEV-GDENSGWSAQKVTNL---HLMLQLVRVLVSPNNPPGATSS-CQKAM---FQCGLLQQLCT 318 (651)
T ss_dssp HHTTCGGGGGG----GGCC-CSCSSCCCHHHHHHH---HHHHHHHHHHTCTTSCHHHHHH-HHHHH---HHTTHHHHHHH
T ss_pred HHcCCHHHHHH----HhCC-CccccccHHHHHHHH---HHHHHHHHHHhCCCCCCCCCHH-HHHHH---HHCCCHHHHHH
Confidence 1 23333332 2322 111111111111110 0122333433333333211100 00000 01235677777
Q ss_pred HHhcc-CCCchHhhHHHHHHHHHHHhc---cccc----ch---HHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCH
Q 003081 365 LVRSG-IGLNTRVGVASFISLLVQKIG---MDIK----PY---TSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATP 433 (850)
Q Consensus 365 ~lk~~-~~~~tr~~a~~~l~~L~~~~~---~~~~----py---~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~ 433 (850)
.+... +....|..+..++..++...+ ..|. |+ .+.++..++..+.+.....+|-+++.++...+....+
T Consensus 319 ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~ 398 (651)
T 3grl_A 319 ILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQK 398 (651)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHH
Confidence 77653 223345567777776653211 1110 11 1235555666663334577887777777666544322
Q ss_pred HHHHHHHHHHHHhhcCCchhhHHHHH-HHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhh
Q 003081 434 SQAQKLIEETAALHIDDKNSQISCAI-LLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVT 512 (850)
Q Consensus 434 ~~v~~li~~l~~~~~~d~~~r~~~~~-~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~ 512 (850)
.+ ..+...+.....+......+.+. +.+++.. .|.+..++. -+++.-.-.++++.++...++-.. ...+..
T Consensus 399 ~Q-~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s--~d~~~~wfA---avil~hll~~n~~~K~~~l~v~l~--~~~ge~ 470 (651)
T 3grl_A 399 GQ-GEIVSTLLPSTIDATGNTVSAGQLLCGGLFS--TDSLSNWCA---AVALAHALQENATQKEQLLRVQLA--TSIGNP 470 (651)
T ss_dssp HH-HHHHHTTSSCCCCCTTSSSCHHHHHHHHHTS--SCHHHHHHH---HHHHHHHHTTCHHHHHHHTTCBCC--CCTTCC
T ss_pred HH-HHHHHhcCCcccccCCCCCCcchhhhhhhcc--CchHHHHHH---HHHHHHHHcCCHHHHHHHHhCccc--ccCCCC
Confidence 11 11111111100011111122222 2233322 233333322 222322223344555443332111 111111
Q ss_pred HHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCc---chhhhH--HHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 003081 513 LQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGE---SLSNYH--HVLLESIMKEVPGRLWEGKDALLYAIGSI 587 (850)
Q Consensus 513 i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~---~l~~~l--~~llp~L~~~L~~r~~~gKe~vL~aL~~l 587 (850)
....++.+. ..+...++ .|- ...-+--|+..+-+ .+..++ +..++.|++.+.... ..-+.+++.|.++
T Consensus 471 ~vtliq~~~----~~L~~~~~-~ri-~vgyL~LL~~WL~e~p~AV~dFL~~~s~l~~L~~~i~~~~-~~~~~lvqGL~a~ 543 (651)
T 3grl_A 471 PVSLLQQCT----NILSQGSK-IQT-RVGLLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAENL-GEEEQLVQGLCAL 543 (651)
T ss_dssp CCBHHHHHH----HHTTTTCC-HHH-HHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHHHSCC-CHHHHHHHHHHHH
T ss_pred cccHHHHHH----HHHhcCCc-hhH-HHHHHHHHHHHHhCChHHHHHHHcCCchHHHHHHHHHhcc-CcchHHHHHHHHH
Confidence 111122222 33322222 222 22233333433322 233333 223466665552211 1245778899998
Q ss_pred HHhcccccccCCC-C-chHHHHHHHHHHHhhcCHHHHHHHH
Q 003081 588 STSCHKDISAEDP-T-TPFAIVDMVSSACRKKIKKYREAAF 626 (850)
Q Consensus 588 ~~~~~~~l~~~~~-~-~~~~i~~~l~~e~~r~~~~~R~~Al 626 (850)
..+....+...+. + -...+.+.+.+..++.+..-|-.-+
T Consensus 544 LLGi~yef~~~~~~~~~R~~l~~ll~~riG~d~y~~kl~~l 584 (651)
T 3grl_A 544 LLGISIYFNDNSLETYMKEKLKQLIEKRIGKENFIEKLGFI 584 (651)
T ss_dssp HHHHHHHTCCSCCGGGCHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhccCCCcCccCHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8887666654442 3 3567777887777766554444433
No 96
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.37 E-value=0.0053 Score=67.11 Aligned_cols=217 Identities=8% Similarity=-0.044 Sum_probs=135.5
Q ss_pred hHhhHHHHHHHHHHHhcccccch---HHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHH---HH--HHHHHHHH
Q 003081 374 TRVGVASFISLLVQKIGMDIKPY---TSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQ---AQ--KLIEETAA 445 (850)
Q Consensus 374 tr~~a~~~l~~L~~~~~~~~~py---~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~---v~--~li~~l~~ 445 (850)
.+..++..|..|+.... ..+.. .+..++.|+..| ...++.+++.++.+++.|.....++. +. .-++.+.+
T Consensus 100 ~q~~Aa~aL~nLa~~~~-~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~ 177 (354)
T 3nmw_A 100 LRRYAGMALTNLTFGDV-ANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME 177 (354)
T ss_dssp HHHHHHHHHHHHTSSCH-HHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHcCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHH
Confidence 35567777777753221 12222 235688899988 57889999999999999976533332 21 24667777
Q ss_pred hh-c-CCchhhHHHHHHHHHHHhhchhhhhhh--HhhHhHHHHHHhcCCch----HHHHHHHHHHHHhcC---CChhhHH
Q 003081 446 LH-I-DDKNSQISCAILLKSYSSVASDVLSGY--HAVIVPVIFISRFEDDK----YVSDLFEELWEENTS---GDRVTLQ 514 (850)
Q Consensus 446 ~~-~-~d~~~r~~~~~~l~al~~~~~~~f~~~--~~~vlP~l~~~~~d~~~----~v~~~~~~v~~~l~~---~~~~~i~ 514 (850)
.+ . .++..+..++.++..++..+.+.-... ..-.+|.+.....+..+ .+++....++..++. +......
T Consensus 178 lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~ 257 (354)
T 3nmw_A 178 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQ 257 (354)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHH
Confidence 54 2 455667777778888877443321222 23456665544433222 466655555544442 2222111
Q ss_pred hhH-HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhH--HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhc
Q 003081 515 LYL-GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYH--HVLLESIMKEVPGRLWEGKDALLYAIGSISTSC 591 (850)
Q Consensus 515 ~yl-~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l--~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~ 591 (850)
... ...++.+...|.+.+..++..|+.+|+.++....+ -...+ .-.+|.|.+-+...+...|+....+|..++...
T Consensus 258 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~-~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 258 ILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK-DQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH-HHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHH-HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 111 23567788888999999999999999999742111 11111 346889999888888889999999999998765
Q ss_pred cc
Q 003081 592 HK 593 (850)
Q Consensus 592 ~~ 593 (850)
..
T Consensus 337 ~~ 338 (354)
T 3nmw_A 337 PA 338 (354)
T ss_dssp CG
T ss_pred HH
Confidence 43
No 97
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.35 E-value=0.00076 Score=68.22 Aligned_cols=167 Identities=13% Similarity=0.056 Sum_probs=106.2
Q ss_pred hhHHHHHHHhhhhhch-hhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH-hhCCCChhHH
Q 003081 97 FGFSKIAKQAGDALKP-HLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLI-QSGSRLWRSR 174 (850)
Q Consensus 97 ~gl~~I~~~~~~~l~p-~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~-~l~~~~wRVR 174 (850)
-||--|...+..-+.. -+..+++...+...|+.-.||-.++.+...+ . ....+++.+.. ...|++||||
T Consensus 51 ~gf~~~~~~a~~~~~~~~~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVr 121 (240)
T 3l9t_A 51 HGFKEEEQRALTDYKSNDGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQ 121 (240)
T ss_dssp ---CHHHHHHHHHHHHSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHH
T ss_pred cccHHHHHHHHHHHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHH
Confidence 3555555444333322 2445666666667999999999999877766 2 12456777776 6679999999
Q ss_pred HHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHH
Q 003081 175 EASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPF 254 (850)
Q Consensus 175 eaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~ 254 (850)
+.++.++++++....++. +++.+..-..|.++.||.+|...+.. |+.+ .. .+.-...++|.
T Consensus 122 e~lA~a~~~~~~~~~pe~-------~l~~~~~W~~d~n~~VRR~Ase~~rp---W~~~-~~--------~k~dp~~ll~i 182 (240)
T 3l9t_A 122 EVLAKAFDEFCKKIEYKK-------ALPIIDEWLKSSNLHTRRAATEGLRI---WTNR-PY--------FKENPNEAIRR 182 (240)
T ss_dssp HHHHHHHHHHHHHHCTTT-------THHHHHHHHHCSSHHHHHHHHHHTCS---GGGS-TT--------TTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHH-------HHHHHHHHhcCCCHHHHHHHHHhhHH---Hhcc-ch--------hhcCHHHHHHH
Confidence 999999999986433333 23334455678899999988654432 4321 11 11233557887
Q ss_pred HhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHh
Q 003081 255 LLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLES 300 (850)
Q Consensus 255 Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~ 300 (850)
|- .-..+++.-||+...+.|.+++|.- |+.|-.+++.
T Consensus 183 L~-~L~~D~s~yVrKSVan~LrD~SK~~--------Pd~V~~~~~~ 219 (240)
T 3l9t_A 183 IA-DLKEDVSEYVRKSVGNALRDISKKF--------PDLVKIELKN 219 (240)
T ss_dssp HH-TTTTCSCHHHHHHHHHHHHHHHTTC--------HHHHHHHHHT
T ss_pred HH-HhcCChHHHHHHHHHHHHHHHhhhC--------HHHHHHHHHH
Confidence 64 2234577889999999999997544 4455555554
No 98
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.21 E-value=0.012 Score=59.13 Aligned_cols=210 Identities=16% Similarity=0.095 Sum_probs=145.9
Q ss_pred HHHHHhhhcCCchHHHHHHHHhccchhhhhhhhHHhhHHHHHHHhhhhhc-hhhhhHHHHHHhhcCCCCHhHHHHHHHHH
Q 003081 62 ELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALK-PHLRLLIPKLVRFQYDPDKNVQDAMAHIW 140 (850)
Q Consensus 62 ~l~~lA~~~g~p~lv~~fm~la~~~~~w~sr~gAa~gl~~I~~~~~~~l~-p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw 140 (850)
+...+|+. +++-+.-+.++.... +-.-+--+.|+++.+.++..+.+. ..+.+++|.+.+...++|..|.=-+..+.
T Consensus 23 ~a~ela~~--~e~~l~~L~~LL~dk-D~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L 99 (265)
T 3b2a_A 23 DAVSLALE--DKRALFLILELAGED-DETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRAL 99 (265)
T ss_dssp HHHHHHHH--CHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHh--chhHHHHHHHHHhcc-chHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 33444443 334566666666433 234455678999999998654554 45788999999999999999999999999
Q ss_pred HHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHH
Q 003081 141 KSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGD 220 (850)
Q Consensus 141 ~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~ 220 (850)
+.+..+-+ .-++.|..++..+..-+.+++.=.|+-+...++-+ +- ....+.+...+++++...+..|+.+|.
T Consensus 100 ~~LLe~vp-L~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv------~~~~~~V~~~l~sLl~Skd~~vK~agl 171 (265)
T 3b2a_A 100 GYLVKDVP-MGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QP------LEDSKLVRTYINELVVSPDLYTKVAGF 171 (265)
T ss_dssp HHHHTTCC-BCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CB------SCCCHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHcCCC-CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Cc------ccchHHHHHHHHHHHhCCChhHHHHHH
Confidence 99997643 34667889999999999988888889888888877 21 112235666677777777889999998
Q ss_pred HHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHh
Q 003081 221 KLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLES 300 (850)
Q Consensus 221 ~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~ 300 (850)
+++..++.. . +.++....++.. +|.|+ .++++.++..++..+-.|.+. |-..++++.+...
T Consensus 172 ~~L~eia~~---S-----~D~~i~~~I~~e-I~elL----~~eD~~l~e~aLd~Le~ils~------pi~~~~~~~~~~~ 232 (265)
T 3b2a_A 172 CLFLNMLNS---S-----ADSGHLTLILDE-IPSLL----QNDNEFIVELALDVLEKALSF------PLLENVKIELLKI 232 (265)
T ss_dssp HHHHHHGGG---C-----SSCCCGGGTTTT-HHHHH----TCSCHHHHHHHHHHHHHHTTS------CCCSCCHHHHHHH
T ss_pred HHHHHhhcc---c-----CCHHHHHHHHHH-HHHHH----cCCCHHHHHHHHHHHHHHHcC------cccHhHHHHHHHH
Confidence 776665421 1 112223445555 66666 345799999999999998654 3334555555554
Q ss_pred c
Q 003081 301 L 301 (850)
Q Consensus 301 L 301 (850)
+
T Consensus 233 ~ 233 (265)
T 3b2a_A 233 S 233 (265)
T ss_dssp H
T ss_pred H
Confidence 4
No 99
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.01 E-value=0.0097 Score=60.88 Aligned_cols=172 Identities=12% Similarity=0.018 Sum_probs=108.9
Q ss_pred HHHHHHhhcCCCCH--hHHHHHHHHHHHhccCChHHHHHHH-HHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCch--
Q 003081 117 LIPKLVRFQYDPDK--NVQDAMAHIWKSLVADPKRTIDEHL-DLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFD-- 191 (850)
Q Consensus 117 lvp~L~r~~~Dp~~--~VR~a~~~iw~~Lv~d~~~~i~~~~-~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~-- 191 (850)
-+|.|.+++..+++ .|+..+......+............ .-.+|.|+..+.+.+..+|+.|+.||.+|..+.+..
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 47777887887777 8876665555555532211122222 135688888998899999999999999998753311
Q ss_pred hhhHHHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhh------ccCC---
Q 003081 192 QVGKHLRRIWTAAFRAMDD-IKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLA------EGIL--- 261 (850)
Q Consensus 192 ~l~~~L~~i~~~l~~~ldD-~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~------~gL~--- 261 (850)
.+.. ...++.+.+++.+ .+..+|+.|..+++.|+.. +.. -..+...-+|.|.+ .|..
T Consensus 89 ~I~~--~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~-----~~~------k~~i~~~~i~~Lv~ll~~p~sG~~~~~ 155 (233)
T 3tt9_A 89 EVAE--LNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN-----DKL------KNLMITEALLTLTENIIIPFSGWPEGD 155 (233)
T ss_dssp HHHH--TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-----GGG------HHHHHHHHHHHHCCCCCHHHHCCCGGG
T ss_pred HHHH--cCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-----hhh------HHHHHhccHHHHHHHHhccccCCcccc
Confidence 2222 2467777788864 5788999988888887631 211 12344455666653 1332
Q ss_pred ------CchhHHHHHHHHHHHHHHHh---cCcccccchHHHHHHHHHhcc
Q 003081 262 ------SKVDSISKASIGVVMKLVKG---AGIAIRPHLSDLVSCMLESLS 302 (850)
Q Consensus 262 ------s~~~evr~~a~~~L~~la~~---~g~~l~P~lp~Lvp~LL~~Ls 302 (850)
+...+++..+..+|.+++.. ....++.+ +.+|+.|...+.
T Consensus 156 ~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~-~Gli~~Lv~~l~ 204 (233)
T 3tt9_A 156 YPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRC-DGLIDSLVHYVR 204 (233)
T ss_dssp CCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTS-TTHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHC-CCcHHHHHHHHH
Confidence 13568999999999999763 23444432 456777777664
No 100
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.92 E-value=0.0085 Score=65.17 Aligned_cols=239 Identities=11% Similarity=0.072 Sum_probs=97.7
Q ss_pred hHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhH
Q 003081 116 LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGK 195 (850)
Q Consensus 116 ~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~ 195 (850)
-.+..|.+=+.||||.||-.+.+....+... +..+.+.+.+.+++.|+++-||.+|+.+...|+... ++.+..
T Consensus 104 Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~------~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~-pe~v~~ 176 (355)
T 3tjz_B 104 IVTSSLTKDMTGKEDSYRGPAVRALCQITDS------TMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCS-FDVVKR 176 (355)
T ss_dssp GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT------TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC-HHHHHT
T ss_pred HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC-HHHHHH
Confidence 4566666667888888888877766666532 134567777778888888888888888888777543 233333
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHH
Q 003081 196 HLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVV 275 (850)
Q Consensus 196 ~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L 275 (850)
.+..+-.++.|.++.|.-.|..++..+. .. ....+..+++.+-..++.++ ++.-.|
T Consensus 177 ----~~~~l~~ll~d~n~~V~~~Al~lL~ei~-------~~-------d~~a~~kLv~~l~~~~l~~~------~~q~~l 232 (355)
T 3tjz_B 177 ----WVNEAQEAASSDNIMVQYHALGLLYHVR-------KN-------DRLAVSKMISKFTRHGLKSP------FAYCMM 232 (355)
T ss_dssp ----THHHHHHHTTCSSHHHHHHHHHHHHHHH-------TT-------CHHHHHHHHHHHHSSCCSCH------HHHHHH
T ss_pred ----HHHHHHHHhcCCCccHHHHHHHHHHHHH-------hh-------chHHHHHHHHHHhcCCCcCh------HHHHHH
Confidence 3334455667877777655543333321 10 01134555665432123222 121122
Q ss_pred HHHHHhcCccc-ccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhc--Ch
Q 003081 276 MKLVKGAGIAI-RPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVV--DT 352 (850)
Q Consensus 276 ~~la~~~g~~l-~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~l--d~ 352 (850)
.+++...++.= ......+++.+.+.|+...+.+ ++||+..++..- +.
T Consensus 233 lr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aV------------------------------vyEa~k~I~~l~~~~~ 282 (355)
T 3tjz_B 233 IRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMV------------------------------VYEAASAIVNLPGCSA 282 (355)
T ss_dssp HHHHTCC-----------------CCCCCSSHHH------------------------------HHHHHHHHTC------
T ss_pred HHHHHHhccccchhhHHHHHHHHHHHHcCCChHH------------------------------HHHHHHHHHhccCCCH
Confidence 23222222110 0112344444444444332221 233333332211 11
Q ss_pred hhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHH
Q 003081 353 ESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFA 421 (850)
Q Consensus 353 ~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a 421 (850)
..+...++.+...+.+. ..+.|-.+.+.|..++.+.+..+..+-..+.+ .+ .|.|.+++.-+.
T Consensus 283 ~~~~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~----li-~d~n~sI~t~Ai 345 (355)
T 3tjz_B 283 KELAPAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTACNLDLEN----LV-TDANRSIATLAI 345 (355)
T ss_dssp -----CCCTHHHHHHSS-SSSSHHHHHHCC---------------------------------------
T ss_pred HHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHHHHHHHHH----Hc-cCCcHhHHHHHH
Confidence 11222334444455543 56778899999988888888877766555544 34 678877764443
No 101
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.64 E-value=0.024 Score=61.64 Aligned_cols=312 Identities=12% Similarity=0.114 Sum_probs=144.5
Q ss_pred HHHHHHhhcCCC--CHh-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhh
Q 003081 117 LIPKLVRFQYDP--DKN-VQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQV 193 (850)
Q Consensus 117 lvp~L~r~~~Dp--~~~-VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l 193 (850)
++.- -|.+.+| +|. .|+.+..+.-.+..+. ..-..-...++.++++.+.+++...|.-.-.++..+... + ++.
T Consensus 27 v~qe-~r~fn~~~~~~~kc~~~l~kll~l~~~G~-~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~-~e~ 102 (355)
T 3tjz_B 27 VLQE-ARVFNETPINPRKCAHILTKILYLINQGE-HLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-A-EDV 102 (355)
T ss_dssp HHHH-GGGTTSSSCCHHHHHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-S-SCG
T ss_pred HHHH-HHHhcCCCCcHHHHHHHHHHHHHHHHCCC-CCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-H-HHH
Confidence 6666 4778887 433 3457777777666432 111222357888899999999999999999999887655 2 222
Q ss_pred hHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHH
Q 003081 194 GKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIG 273 (850)
Q Consensus 194 ~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~ 273 (850)
. -....+.+=+.|..+.+|..|. ++++++. ++ +++..+.|.+. +++.+.++-||+.|+-
T Consensus 103 i----Lv~Nsl~kDl~~~N~~iR~lAL---RtL~~I~----~~---------~m~~~l~~~lk-~~L~d~~pyVRk~A~l 161 (355)
T 3tjz_B 103 I----IVTSSLTKDMTGKEDSYRGPAV---RALCQIT----DS---------TMLQAIERYMK-QAIVDKVPSVSSSALV 161 (355)
T ss_dssp G----GGHHHHHHHHHSSCHHHHHHHH---HHHHHHC----CT---------TTHHHHHHHHH-HHHTCSSHHHHHHHHH
T ss_pred H----HHHHHHHhhcCCCcHhHHHHHH---HHHhcCC----CH---------HHHHHHHHHHH-HHcCCCCHHHHHHHHH
Confidence 1 2233344557889999999875 4444332 22 36677788765 5788999999999999
Q ss_pred HHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChh
Q 003081 274 VVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTE 353 (850)
Q Consensus 274 ~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~ 353 (850)
+..++....++.++.| ++.+-+++++..|.+. |-... ++..+ ...|..
T Consensus 162 ~~~kL~~~~pe~v~~~----~~~l~~ll~d~n~~V~-~~Al~--------------------------lL~ei-~~~d~~ 209 (355)
T 3tjz_B 162 SSLHLLKCSFDVVKRW----VNEAQEAASSDNIMVQ-YHALG--------------------------LLYHV-RKNDRL 209 (355)
T ss_dssp HHHHHTTTCHHHHHTT----HHHHHHHTTCSSHHHH-HHHHH--------------------------HHHHH-HTTCHH
T ss_pred HHHHHhccCHHHHHHH----HHHHHHHhcCCCccHH-HHHHH--------------------------HHHHH-HhhchH
Confidence 9888865444433322 2333344444333332 11100 11111 112322
Q ss_pred hHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCC
Q 003081 354 SLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGM-DIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYAT 432 (850)
Q Consensus 354 ~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~-~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~ 432 (850)
.+.++++.+. .. +...--+-+.++- ++..... +-.....++++.+.+.+ ...|+.|.=+++.++-.+-. .+
T Consensus 210 a~~kLv~~l~----~~-~l~~~~~q~~llr-~l~~~~~~d~~~~~~~~~~~l~~~L-~~~~~aVvyEa~k~I~~l~~-~~ 281 (355)
T 3tjz_B 210 AVSKMISKFT----RH-GLKSPFAYCMMIR-VASRQLEDEDGSRDSPLFDFIESCL-RNKHEMVVYEAASAIVNLPG-CS 281 (355)
T ss_dssp HHHHHHHHHH----SS-CCSCHHHHHHHHH-HHTCC-----------------CCC-CCSSHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHh----cC-CCcChHHHHHHHH-HHHHhccccchhhHHHHHHHHHHHH-cCCChHHHHHHHHHHHhccC-CC
Confidence 3444544432 21 2211112222221 1111111 11123456788888888 67888888777777766533 22
Q ss_pred HHHHHHHHHHHHHhhc-CCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHH
Q 003081 433 PSQAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDL 497 (850)
Q Consensus 433 ~~~v~~li~~l~~~~~-~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~ 497 (850)
...+...+..+...+. .|++.|.++...+..+....|+.+..+...+...+ .|++.+++..
T Consensus 282 ~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li----~d~n~sI~t~ 343 (355)
T 3tjz_B 282 AKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLV----TDANRSIATL 343 (355)
T ss_dssp ------CCCTHHHHHHSSSSSSHHHHHHCC------------------------------------
T ss_pred HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHc----cCCcHhHHHH
Confidence 2222222222333332 57788888888888888777877777776666554 4455555444
No 102
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=96.54 E-value=0.074 Score=65.71 Aligned_cols=336 Identities=13% Similarity=0.079 Sum_probs=175.9
Q ss_pred CchhHHHHHHHHHHHHHHHhcC----cccccchHHHHHHHHHhcc-ccchhhhhHHHHhhhhcccchhhhHHHHHhhccC
Q 003081 262 SKVDSISKASIGVVMKLVKGAG----IAIRPHLSDLVSCMLESLS-SLEDQGLNYIELHAANAGIQTEKLENLRISIAKG 336 (850)
Q Consensus 262 s~~~evr~~a~~~L~~la~~~g----~~l~P~lp~Lvp~LL~~Ls-~~ep~~~nyl~~~a~~~~~~~d~id~~r~~~~~~ 336 (850)
++...-+..+++.+.-|..+.. +.......-+.|.|...+. +..|+...+ |.
T Consensus 519 ~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~--W~--------------------- 575 (997)
T 1vsy_5 519 KDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEI--WS--------------------- 575 (997)
T ss_dssp SSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHH--HH---------------------
T ss_pred cccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHH--HH---------------------
Confidence 3445556677888888876543 2344555666777777776 455553221 11
Q ss_pred CcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccC----CCch-HhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhc
Q 003081 337 SPMWDTLDLCINVVDTESLDQLVPHLARLVRSGI----GLNT-RVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEE 411 (850)
Q Consensus 337 s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~----~~~t-r~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D 411 (850)
-++..+....|......|+..|.. ++... +... ...-..++..+....+-.+.. .++++..++ + ++
T Consensus 576 ----~~i~~~~~~~DprR~~~L~e~l~~-~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~-~~~~l~~~~--l-~h 646 (997)
T 1vsy_5 576 ----TLAWWLPAVVDLRRSKTFFCHFIN-ADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPD-VGKLFDELV--F-DH 646 (997)
T ss_dssp ----HHHHHHHHHSCGGGCHHHHHHHTC-CCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCC-CHHHHHHCC--S-CC
T ss_pred ----HHHHHHhcCCChhhhHHHHHHHHH-hhcccCCCCCcHHHHHHHHHHHHHHHHHhcccccc-HHHHHHHHH--h-CC
Confidence 123334444554444434443311 01000 0010 112234444444455545543 677777777 6 78
Q ss_pred CcHHHHHHHHHHHHHHhhhCC---H-------------------------HH----HHHHHHHHHHhhcC--C-------
Q 003081 412 KSAAAKRAFASACASVLKYAT---P-------------------------SQ----AQKLIEETAALHID--D------- 450 (850)
Q Consensus 412 ~n~~Vr~~~a~alg~L~~~~~---~-------------------------~~----v~~li~~l~~~~~~--d------- 450 (850)
+...||++.+..+..++...- . +. +.++++.+..+..+ +
T Consensus 647 ~y~~VRe~Ig~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~ 726 (997)
T 1vsy_5 647 PYDQVRQAVAKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFI 726 (997)
T ss_dssp SCHHHHHHHHHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTT
T ss_pred ChHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccc
Confidence 999999999999888776541 0 11 11122222222110 0
Q ss_pred -chhh---HHHHHHHHH-HHhhchhhhhhhHhh-HhHHHHHHhcCCch-HHHHH-HHHHHHHhcCCChhhHHhhHHHHHH
Q 003081 451 -KNSQ---ISCAILLKS-YSSVASDVLSGYHAV-IVPVIFISRFEDDK-YVSDL-FEELWEENTSGDRVTLQLYLGEIVS 522 (850)
Q Consensus 451 -~~~r---~~~~~~l~a-l~~~~~~~f~~~~~~-vlP~l~~~~~d~~~-~v~~~-~~~v~~~l~~~~~~~i~~yl~eIl~ 522 (850)
.++. .++...+.+ +.....-.+.++... ++|+++......+. ++... ...++..+.... .-..++++++.
T Consensus 727 ~s~y~~~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~--~~~~~~~~~l~ 804 (997)
T 1vsy_5 727 KTDYFYRTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMP--IRKNHVAAIVD 804 (997)
T ss_dssp TSHHHHHHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSC--CCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCC--CCHHHHHHHHH
Confidence 1111 122222222 222223345667766 88877543333332 34333 333444443321 12356777777
Q ss_pred HHHHhhc-CCCHHHHHHHHHHHHHHHH-HhCcchhh-hHHHHHHHHHHhcCCCC-hhhHHHHHHHHHHHHHhc-c-ccc-
Q 003081 523 LICEGIA-SSSWSSKRKSAKAICKLGE-ILGESLSN-YHHVLLESIMKEVPGRL-WEGKDALLYAIGSISTSC-H-KDI- 595 (850)
Q Consensus 523 ll~~~L~-d~s~~vr~~aa~alg~la~-~~g~~l~~-~l~~llp~L~~~L~~r~-~~gKe~vL~aL~~l~~~~-~-~~l- 595 (850)
.+..... +++| .|..+..-+..+.- .+- .+.+ ....|+..+...|.+.. -++|+..-.+|++++... . ...
T Consensus 805 ~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f-~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~ 882 (997)
T 1vsy_5 805 YVCSSNVALSSN-QTKLQLAFIQHFLSAELL-QLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLL 882 (997)
T ss_dssp HSSCTTTTSCSS-SHHHHHHHHHHHHHHHTT-TSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHH
T ss_pred HHHHHHhcCCcH-HHHHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHH
Confidence 7777665 6899 88877777666663 222 1222 34678889999998888 899999999999998644 2 100
Q ss_pred ------ccCCCC--chHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCC
Q 003081 596 ------SAEDPT--TPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRD 638 (850)
Q Consensus 596 ------~~~~~~--~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~~ 638 (850)
...... ....+ .+.. +++..-|-+|+--|++++.++|-
T Consensus 883 ~li~~f~~~~~~~~~~~~~----~~~~-~~~~~~rH~aVLgL~AlV~a~Py 928 (997)
T 1vsy_5 883 SLIERFAKGLDVNKYTSKE----RQKL-SKTDIKIHGNVLGLGAIISAFPY 928 (997)
T ss_dssp HHHHHHTTSSTTTSSCHHH----HHHH-HHHCHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHhhccccccc----cccc-chHHHHHHHHHHHHHHHHhhCCC
Confidence 000000 01111 1111 11224677778889999999984
No 103
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=95.74 E-value=4.7 Score=47.69 Aligned_cols=69 Identities=19% Similarity=0.188 Sum_probs=49.6
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Q 003081 158 IFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVT 227 (850)
Q Consensus 158 Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~ 227 (850)
|+| +++.+.+.++..|+.||.|+++|+++.....+.-+-.-+.+.+.+++.|....||.+|..+++.|+
T Consensus 36 i~P-ll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~ 104 (684)
T 4gmo_A 36 ILP-VLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLA 104 (684)
T ss_dssp THH-HHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 444 566789999999999999999999764433333322223334455689999999999987777764
No 104
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=95.64 E-value=5.5 Score=47.81 Aligned_cols=361 Identities=9% Similarity=0.036 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHhhCCC--ChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHHHH
Q 003081 154 HLDLIFDDLLIQSGSR--LWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDD-IKETVRTAGDKLCRSVTSLT 230 (850)
Q Consensus 154 ~~~~Il~~Ll~~l~~~--~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD-~k~~VR~aA~~~~~~L~~~~ 230 (850)
.++.|+.-++..+.+. ..+. .+.+.-+.-.+.+...+....||..++..+-...-= ....--..-.+.+..+....
T Consensus 229 q~~~iFt~~lr~l~~~~~~~~~-~~~a~~IV~sl~~~~~~~~~~~L~~Li~~iesy~HPSN~G~Wt~~L~~Fl~~L~~~f 307 (799)
T 1vsy_4 229 QMTFMFNRLQGHLRTDGQIHSY-SRTVKPFVYAINGSKKDRFFEKLVSLAKAIETFIHPSNNGFWTKPNAKFVHAFIKSY 307 (799)
T ss_dssp HHHHHHHHHHHHHHTTCCCSSH-HHHHHHHHTTCCTTSCTTTHHHHHHHHHHHHHHHSTTCCSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcCCccch-HHHHHHHHHHcCCCCchHHHHHHHHHHHHHhcccCCCCCCccHHHHHHHHHHHHHHH
Confidence 3777777777766521 1111 122333444444433456777888877766554410 00011111122333333322
Q ss_pred HHhh--hcc----------cCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHH
Q 003081 231 IRLC--DVT----------LTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCML 298 (850)
Q Consensus 231 ~r~~--~~~----------~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL 298 (850)
.+.. +.. .-.......++..++|.++ .|+-+.+..+...+..++..++--.+..-.-.+|.++..+.
T Consensus 308 ~kR~~~Er~~~~~~~p~~~~Lt~~~~~~fV~~l~p~~~-~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y 386 (799)
T 1vsy_4 308 HGRVKYEEDICARGVTNGICLTSFCHEEIVEIFLNIIS-LGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLY 386 (799)
T ss_dssp HHHHHHHTTTTTTTCCCSSSCCHHHHHHHHHHHHHHHH-HHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccCCCchhhcCCHHHHHHHHHHHHHHHH-HHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHH
Confidence 2221 100 0123445679999999987 68889888999999999999986544111125566666666
Q ss_pred Hhccc---cchhhhhHHHHhhhhcccchhhhHH-HHHhhccC----CcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccC
Q 003081 299 ESLSS---LEDQGLNYIELHAANAGIQTEKLEN-LRISIAKG----SPMWDTLDLCINVVDTESLDQLVPHLARLVRSGI 370 (850)
Q Consensus 299 ~~Ls~---~ep~~~nyl~~~a~~~~~~~d~id~-~r~~~~~~----s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~ 370 (850)
.+|.+ .||-... ...+ .+.. .|. .+.. ..+...+..+++.+|.....+-
T Consensus 387 ~sLe~~~l~e~Hrl~-~aL~---------~l~~~~r~-lv~~~~yr~hl~~lL~l~LpgID~ND~~KT------------ 443 (799)
T 1vsy_4 387 DTLADQFINSRHRII-SSLK---------QFTRVIRF-IVMDKLYRVHITNVLSMLVSKLDMNDTNLT------------ 443 (799)
T ss_dssp HHHTTTTTTCHHHHH-HHHH---------HHHTTHHH-HTTSTTGGGHHHHHHHHHHHTCCSSCHHHH------------
T ss_pred HHhccccccchhHHH-HHHH---------HHHHHHHH-HhcCcccHHHHHHHHHHHhccCCcccHHHH------------
Confidence 66655 2332110 0000 0000 000 0000 0122333344444443222111
Q ss_pred CCchHhhHHHHHHHHHHH----------------------------------------------------hcccccchHH
Q 003081 371 GLNTRVGVASFISLLVQK----------------------------------------------------IGMDIKPYTS 398 (850)
Q Consensus 371 ~~~tr~~a~~~l~~L~~~----------------------------------------------------~~~~~~py~~ 398 (850)
..+.+++..++.. ....|..++.
T Consensus 444 -----~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~sT~~f~~~v~ 518 (799)
T 1vsy_4 444 -----SNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESSKTFRVDDELLNNAFKASTTVFQSMLK 518 (799)
T ss_dssp -----HHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCSSSCCCCTTHHHHHHHHHTSTHHHHHH
T ss_pred -----HHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccccccccccHHHHHHHHHHHHhhHHHHHH
Confidence 1233333332221 1123445555
Q ss_pred HHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhcCC--chhhHHHHHH----HHHHHhhchhhh
Q 003081 399 MLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDD--KNSQISCAIL----LKSYSSVASDVL 472 (850)
Q Consensus 399 ~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~~d--~~~r~~~~~~----l~al~~~~~~~f 472 (850)
.++..++..+.++....+-.....++..++..++++.....++++.+...++ ......++.+ +.++++..|+.|
T Consensus 519 ~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~~if~~~l~k~~~fv~~n~~~~a~~~v~~L~~~~~~a~~~~~P~~~ 598 (799)
T 1vsy_4 519 VYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDDKIFNYFASLLNRNFWSNDSFKEKDPNYELVTIPLAALVRRNNGLS 598 (799)
T ss_dssp HHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHSCSCCCSSSCCTHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 6666677666323344455566777888888899988888888777755321 1222233444 788888888744
Q ss_pred hhhHhhHhHHHHHHh-----cC------C-----chHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhc-CCCHHH
Q 003081 473 SGYHAVIVPVIFISR-----FE------D-----DKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIA-SSSWSS 535 (850)
Q Consensus 473 ~~~~~~vlP~l~~~~-----~d------~-----~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~-d~s~~v 535 (850)
+ .++|.+.... +. . .+.----+..++.+++...+..+-+|.+++++++...+. ..+..+
T Consensus 599 ~----~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~~v~~~g~~lL~y~deL~~il~~~~~~~k~~~~ 674 (799)
T 1vsy_4 599 K----ELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALNDVLRNCHESLLEYSDELITFMKYLYDNVTNPPL 674 (799)
T ss_dssp H----HHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHHHHTTTGGGGGTTHHHHHHHHHHHHHSCCCHHH
T ss_pred H----HHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHccHHHHHHHHHHHHHHhcCcch
Confidence 4 4555443111 11 0 111112234677787887777888999999999887764 345444
Q ss_pred HHHHHHHHHHHHH
Q 003081 536 KRKSAKAICKLGE 548 (850)
Q Consensus 536 r~~aa~alg~la~ 548 (850)
-..+...+..+..
T Consensus 675 ~~~~~~ll~~lL~ 687 (799)
T 1vsy_4 675 DVITSIVIHSALA 687 (799)
T ss_dssp HHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4545555554444
No 105
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=95.33 E-value=0.99 Score=45.41 Aligned_cols=187 Identities=14% Similarity=0.026 Sum_probs=117.0
Q ss_pred HHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhchhhhh-hhH
Q 003081 398 SMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLS-GYH 476 (850)
Q Consensus 398 ~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~~d~~~r~~~~~~l~al~~~~~~~f~-~~~ 476 (850)
+..+..+...+ .|+++.|+-.+-.+++.+++.++ +... ...
T Consensus 32 e~~l~~L~~LL-~dkD~~vk~raL~~LeellK~~~-------------------------------------~~l~~~~~ 73 (265)
T 3b2a_A 32 KRALFLILELA-GEDDETTRLRAFVALGEILKRAD-------------------------------------SDLRMMVL 73 (265)
T ss_dssp HHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHHHSC-------------------------------------HHHHHHHH
T ss_pred hhHHHHHHHHH-hccchHHHHHHHHHHHHHHHhcc-------------------------------------ccccHHHH
Confidence 44666666666 56666666665555555544333 2221 223
Q ss_pred hhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhh
Q 003081 477 AVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSN 556 (850)
Q Consensus 477 ~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~ 556 (850)
..++|-+.....+.++.+.--+.+++.-+..+.+-+-..| ..+...+...+.+++.-++..++..+|.+ ....
T Consensus 74 e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y-~Kl~~aL~dlik~~~~il~~eaae~Lgkl------kv~~ 146 (265)
T 3b2a_A 74 ERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF-LKAAKTLVSLLESPDDMMRIETIDVLSKL------QPLE 146 (265)
T ss_dssp HHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH-HHHHHHHHHHTTSCCHHHHHHHHHHHHHC------CBSC
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHHhcCCCchHHHHHHHHhCcC------Cccc
Confidence 4455554433344455554444466666665543222223 34666677777888888888888888877 1122
Q ss_pred hHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 003081 557 YHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKA 635 (850)
Q Consensus 557 ~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~ 635 (850)
..+.++..+..-+.++....|...+.+|..++.... ++.....|+.-+-.-++.+++.++..|+..+-.++..
T Consensus 147 ~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~------D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 147 DSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA------DSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS------SCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred chHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC------CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 245666666666677888999999999988876443 4455666666666666778999999999998886653
No 106
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=93.73 E-value=1.5 Score=44.23 Aligned_cols=138 Identities=9% Similarity=0.015 Sum_probs=89.4
Q ss_pred HhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhh-hCCH
Q 003081 355 LDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLK-YATP 433 (850)
Q Consensus 355 l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~-~~~~ 433 (850)
.+++++....+.++. ....|..|+..|..+ . ....+++.+...+.+|.+-.||+-++.+++.++. ..++
T Consensus 69 ~~~~~~la~~L~~~~-~deVR~~Av~lLg~~--------~-~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe 138 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSD-VYQVRMYAVFLFGYL--------S-KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK 138 (240)
T ss_dssp HHHHHHHHHHHHTCS-SHHHHHHHHHHHHHT--------T-TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCc-chHHHHHHHHHHHhc--------c-CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH
Confidence 345566555666654 345677777755433 1 2366788877755579999999999999999986 4443
Q ss_pred HHHHHHHHHHHHhhc-CCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCC
Q 003081 434 SQAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSG 508 (850)
Q Consensus 434 ~~v~~li~~l~~~~~-~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~ 508 (850)
. .++.+..+.. +|...|..+.....-.++. ..|+.....++|++-..+.|++.+|+......+.++...
T Consensus 139 ~----~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~--~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 139 K----ALPIIDEWLKSSNLHTRRAATEGLRIWTNR--PYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp T----THHHHHHHHHCSSHHHHHHHHHHTCSGGGS--TTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred H----HHHHHHHHhcCCCHHHHHHHHHhhHHHhcc--chhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 2 2334445554 3455677776554333332 245566677888887677888999998877777665543
No 107
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=93.47 E-value=0.75 Score=54.64 Aligned_cols=73 Identities=19% Similarity=0.110 Sum_probs=53.3
Q ss_pred hHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH-hhCCCChhHHHHHHHHHHHHHccCC
Q 003081 116 LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLI-QSGSRLWRSREASCLSLADIIQGRK 189 (850)
Q Consensus 116 ~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~-~l~~~~wRVReaa~~Al~~Ll~~~~ 189 (850)
++.|.|- .+..|++.+|..++.+..-|+.|+....--..+.++..++. .+.|++-.||++|+.||.+|....+
T Consensus 35 ~i~Pll~-~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g 108 (684)
T 4gmo_A 35 KILPVLK-DLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEE 108 (684)
T ss_dssp TTHHHHH-HHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHH-HcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcC
Confidence 4556543 36889999999999999999987542111122446666554 5789999999999999999986544
No 108
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=93.41 E-value=6.2 Score=43.86 Aligned_cols=117 Identities=12% Similarity=0.118 Sum_probs=80.8
Q ss_pred CchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhc-CC
Q 003081 372 LNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI-DD 450 (850)
Q Consensus 372 ~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~-~d 450 (850)
...|.-|+++|..+. ..|-...+.-+.+++..+ +|.+..||..+...+..+++. +.+.++.+-|.+++. +|
T Consensus 42 ~k~K~LaaQ~I~kff----k~FP~l~~~Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~---~~i~kiaDvL~QlLqtdd 113 (507)
T 3u0r_A 42 TKEKRLAAQFIPKFF----KHFPELADSAINAQLDLC-EDEDVSIRRQAIKELPQFATG---ENLPRVADILTQLLQTDD 113 (507)
T ss_dssp HHHHHHHHHHHHHHG----GGCGGGHHHHHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT---TCHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHH----hhChhhHHHHHHHHHHHH-hcccHHHHHHHHHhhHHHhhh---hhhhhHHHHHHHHHhccc
Confidence 446778888886554 455567788899999999 799999999888887777654 668888888888886 45
Q ss_pred chhhHHHHHHHHHHHhhch-hhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHH
Q 003081 451 KNSQISCAILLKSYSSVAS-DVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEE 504 (850)
Q Consensus 451 ~~~r~~~~~~l~al~~~~~-~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~ 504 (850)
..+...+-..+.++.+.-+ ..+...+.++.+ .++.+|+-..+-+.+
T Consensus 114 ~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~~--------~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 114 SAEFNLVNNALLSIFKMDAKGTLGGLFSQILQ--------GEDIVRERAIKFLST 160 (507)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--------SCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcChHHHHHHHHHHHcc--------cchHHHHHHHHHHHH
Confidence 5667777777777766543 234444444443 256677655444433
No 109
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=92.91 E-value=5.5 Score=39.00 Aligned_cols=131 Identities=11% Similarity=0.098 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHH
Q 003081 149 RTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRA-MDDIKETVRTAGDKLCRSVT 227 (850)
Q Consensus 149 ~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~-ldD~k~~VR~aA~~~~~~L~ 227 (850)
+....||+.|.+.++. +.|++ |+..|-...+..++-||+-+-+..-... ++|. .+=....+.++++.
T Consensus 7 ~Elq~yf~~It~a~~~-------~~r~~---aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl~~l--~~L~~lm~~~~ALl 74 (196)
T 4atg_A 7 KELQLYFDKILSMIKS-------DMKDI---AIECLEKESGLQQLVPYFIQHISELILKSFKEA--EVLKTCIALYFSLI 74 (196)
T ss_dssp HHHHHHHHHHHHHHTS-------TTHHH---HHHHHHHCSSCTTTHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-------HHHHH---HHHHHhcCCChhhhHHHHHHHHHHHHHhccCCH--HHHHHHHHHHHHHH
Confidence 3567788888887766 23544 4566666777888889888766543332 2322 11111122222221
Q ss_pred HHHHHhhhcccCcchhHHhHHHHhHHHHhh----ccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccc
Q 003081 228 SLTIRLCDVTLTEISDARQSMDIVLPFLLA----EGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSS 303 (850)
Q Consensus 228 ~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~----~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~ 303 (850)
+..+ -.-.++++.++|.++. +.+... .+|.+|..++..|++..+..-.---|.++..+...+.+
T Consensus 75 -------~N~~---l~lepYlH~LipsvLtCll~k~l~~~--~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~d 142 (196)
T 4atg_A 75 -------KNKH---VFIDPYLHQILPSLLTCVIGKSIVDD--DVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMD 142 (196)
T ss_dssp -------HCTT---CCCGGGHHHHHHHHHHHHHCTTCCCH--HHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTC
T ss_pred -------cCCC---CChHHHHHHHHHHHHHHHHhcccCHH--HHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcC
Confidence 2111 1234577777777764 233322 89999999999999998875444556666667666654
No 110
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=91.49 E-value=7.2 Score=42.45 Aligned_cols=108 Identities=14% Similarity=0.176 Sum_probs=73.7
Q ss_pred hhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHc------
Q 003081 113 HLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQ------ 186 (850)
Q Consensus 113 ~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~------ 186 (850)
.+++++|.++.+..||+..||+.......-.... -.++...+++.|..-+.|++.-|-..++.+.+.+..
T Consensus 60 Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~----~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i 135 (386)
T 3o2t_A 60 LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR----DIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWM 135 (386)
T ss_dssp GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999987655443321 123456677777777778888888888887777653
Q ss_pred --cCCchhhhHHHHHHHHH-------HHHHhccCcHHHHHHHHHHHHHHH
Q 003081 187 --GRKFDQVGKHLRRIWTA-------AFRAMDDIKETVRTAGDKLCRSVT 227 (850)
Q Consensus 187 --~~~~~~l~~~L~~i~~~-------l~~~ldD~k~~VR~aA~~~~~~L~ 227 (850)
.... .....+.|.. ++...|.....||-.+.+.+..+.
T Consensus 136 ~~~~~~---~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 136 VKSRVI---SELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HHC-CC---CHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred hcCCCc---chhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 2211 1123345544 445566778899999887777654
No 111
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=91.31 E-value=13 Score=38.10 Aligned_cols=110 Identities=11% Similarity=0.141 Sum_probs=75.1
Q ss_pred hhhhHHHHHHhhcCCCCHhHHHHHHHHH-HHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHc-----
Q 003081 113 HLRLLIPKLVRFQYDPDKNVQDAMAHIW-KSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQ----- 186 (850)
Q Consensus 113 ~L~~lvp~L~r~~~Dp~~~VR~a~~~iw-~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~----- 186 (850)
++++++|.++.+..||+..||+-..... .++..++ ++...+++.|..-+.|++.-|-..++.+.+.+..
T Consensus 50 ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~-----~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~ 124 (257)
T 3gs3_A 50 LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV-----ELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQY 124 (257)
T ss_dssp GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG-----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888889999999999986644 4554332 3566677777777778888888888877777654
Q ss_pred cCCchhhhHHHHHHHHH-------HHHHhccCcHHHHHHHHHHHHHHH
Q 003081 187 GRKFDQVGKHLRRIWTA-------AFRAMDDIKETVRTAGDKLCRSVT 227 (850)
Q Consensus 187 ~~~~~~l~~~L~~i~~~-------l~~~ldD~k~~VR~aA~~~~~~L~ 227 (850)
-...+...+...+.|.. +++.+|.....||-.+.+.+..+.
T Consensus 125 i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 125 LCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp HTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 11111223344566655 444567778899999887776654
No 112
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=90.99 E-value=6.8 Score=39.56 Aligned_cols=111 Identities=16% Similarity=0.044 Sum_probs=70.1
Q ss_pred HHHHHHHhccchhh--hhhhhHHhhHHHHHHHhhhhhch-hhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHH
Q 003081 76 IYKFMDLANYQVSL--NSKRGAAFGFSKIAKQAGDALKP-HLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTID 152 (850)
Q Consensus 76 v~~fm~la~~~~~w--~sr~gAa~gl~~I~~~~~~~l~p-~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~ 152 (850)
++.++.+..+.. . .-+..|+..+..++.+..+.-.- .-...||.|.+.+..+++.||+.+..+..-|..+....-.
T Consensus 10 i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 10 LERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp HHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 556666665542 2 23344555677766543211110 1124689999999999999999999888888865322111
Q ss_pred HHH-HHHHHHHHHhhC-CCChhHHHHHHHHHHHHHcc
Q 003081 153 EHL-DLIFDDLLIQSG-SRLWRSREASCLSLADIIQG 187 (850)
Q Consensus 153 ~~~-~~Il~~Ll~~l~-~~~wRVReaa~~Al~~Ll~~ 187 (850)
... .--++.|+..+. ++++.+|+.++.||-+|-..
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~ 125 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC
Confidence 111 124566666665 56899999999999998653
No 113
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=89.60 E-value=12 Score=36.48 Aligned_cols=88 Identities=14% Similarity=0.165 Sum_probs=62.5
Q ss_pred HHHHHhcCCChhhHHhhHHHHHHHHHHhhcCC---CHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCC--CCh
Q 003081 500 ELWEENTSGDRVTLQLYLGEIVSLICEGIASS---SWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPG--RLW 574 (850)
Q Consensus 500 ~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~---s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~--r~~ 574 (850)
++...+..+..-.+.+|+-++++.+..|+-.. ...+|..||..++.++..+|.....-.+.++..+.+++-+ ++.
T Consensus 68 ~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l 147 (196)
T 4atg_A 68 ALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSE 147 (196)
T ss_dssp HHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCH
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCCh
Confidence 33333333332357899999999999885332 2289999999999999999887665678899999999843 556
Q ss_pred hhHHHHHHHHHHH
Q 003081 575 EGKDALLYAIGSI 587 (850)
Q Consensus 575 ~gKe~vL~aL~~l 587 (850)
...-.++.+|..+
T Consensus 148 ~t~YGAi~GL~~l 160 (196)
T 4atg_A 148 DSQYGALYCLSIL 160 (196)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555544
No 114
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=89.36 E-value=11 Score=39.89 Aligned_cols=124 Identities=8% Similarity=0.189 Sum_probs=89.5
Q ss_pred HhhHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHHHHhCcchhhhHHHHHHHHHHh----cCC---CChhhHHHHHHHHH
Q 003081 514 QLYLGEIVSLICEGIASSSWSSKRKS-AKAICKLGEILGESLSNYHHVLLESIMKE----VPG---RLWEGKDALLYAIG 585 (850)
Q Consensus 514 ~~yl~eIl~ll~~~L~d~s~~vr~~a-a~alg~la~~~g~~l~~~l~~llp~L~~~----L~~---r~~~gKe~vL~aL~ 585 (850)
..++|.+++.++.--....++.|.+- ..++..++.++|+.+.+.+|.++..+-++ +.. .-++.|...++-|.
T Consensus 68 ~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ 147 (321)
T 1w9c_A 68 ENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQ 147 (321)
T ss_dssp HHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHH
Confidence 45566666544443333444444433 35677888899998998888887765533 332 23789999999999
Q ss_pred HHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcC
Q 003081 586 SISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFR 637 (850)
Q Consensus 586 ~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~ 637 (850)
++...|=..+-.-.++....++..++|.+|.....+-..++.++-+++..+.
T Consensus 148 ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~ 199 (321)
T 1w9c_A 148 AVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVA 199 (321)
T ss_dssp HHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHh
Confidence 9998886554332234557788999999999999999999999999998885
No 115
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=88.94 E-value=7.6 Score=44.96 Aligned_cols=196 Identities=11% Similarity=0.064 Sum_probs=121.6
Q ss_pred HHHHHHHHHHhhc--CCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHH-hcC-CchHHHHHHHHHH-HHhcCCCh
Q 003081 436 AQKLIEETAALHI--DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFIS-RFE-DDKYVSDLFEELW-EENTSGDR 510 (850)
Q Consensus 436 v~~li~~l~~~~~--~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~-~~d-~~~~v~~~~~~v~-~~l~~~~~ 510 (850)
..+.++.+.+.+. .-.+.|+.|...+.++++.++..+. ..-+|.++.. ..| .|.++.....+++ .-+++...
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg---~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVG---IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHH---HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhh---hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 3444455555442 1234577888888888877665433 3334444332 233 3334333333333 33333211
Q ss_pred -----------hhHHh-hH------HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhh---HHHHHHHHHHhc
Q 003081 511 -----------VTLQL-YL------GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNY---HHVLLESIMKEV 569 (850)
Q Consensus 511 -----------~~i~~-yl------~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~---l~~llp~L~~~L 569 (850)
..+.. +. ++-++++...|++.+..+|-.+..+|..++..-+...... .|.-+|.|+..|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 01111 11 3346778888999999999999999999998877655543 256788999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhccccccc--CCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 003081 570 PGRLWEGKDALLYAIGSISTSCHKDISA--EDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKA 635 (850)
Q Consensus 570 ~~r~~~gKe~vL~aL~~l~~~~~~~l~~--~~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~ 635 (850)
.++....|...+-.|..++.+..+ +.. ..+.-.+.++.++..|-.-+...+-.-++.++..+++.
T Consensus 176 ~d~rE~iRneallLL~~Lt~~n~~-iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~ 242 (651)
T 3grl_A 176 ADSREVIRNDGVLLLQALTRSNGA-IQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKN 242 (651)
T ss_dssp GCSSHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTT
T ss_pred hCchHHHHHHHHHHHHHHhcCCHH-HHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhc
Confidence 887778899999889888765432 110 01234566777777765445667788888888888875
No 116
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=88.10 E-value=0.29 Score=50.25 Aligned_cols=39 Identities=23% Similarity=0.144 Sum_probs=23.0
Q ss_pred HHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHH
Q 003081 163 LIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGD 220 (850)
Q Consensus 163 l~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~ 220 (850)
...+.|++|+||+++..+++ .+.+.. |+|....||.++.
T Consensus 200 ~~Ll~D~d~~VR~~aa~~l~------------------~~~L~~-L~D~~~~VR~aa~ 238 (244)
T 1lrv_A 200 LELLHDPDWTVRLAAVEHAS------------------LEALRE-LDEPDPEVRLAIA 238 (244)
T ss_dssp GGGGGCSSHHHHHHHHHHSC------------------HHHHHH-CCCCCHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHcCC------------------HHHHHH-ccCCCHHHHHHHH
Confidence 33346666666666665542 122223 4888888888774
No 117
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=82.22 E-value=13 Score=39.31 Aligned_cols=146 Identities=8% Similarity=0.152 Sum_probs=103.0
Q ss_pred hHHHHHHHHh--ccch-hhhhhhhHHhhH-HHHHHHhhhhhchhhhhHHHHHHhhc-------CCCCHhHHHHHHHHHHH
Q 003081 74 DLIYKFMDLA--NYQV-SLNSKRGAAFGF-SKIAKQAGDALKPHLRLLIPKLVRFQ-------YDPDKNVQDAMAHIWKS 142 (850)
Q Consensus 74 ~lv~~fm~la--~~~~-~w~sr~gAa~gl-~~I~~~~~~~l~p~L~~lvp~L~r~~-------~Dp~~~VR~a~~~iw~~ 142 (850)
.+++++++.. ..+. ....|.+-...+ +.|+.+.++.+.|+++.++..+|.+- ++.+|..|...-...++
T Consensus 69 ~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~a 148 (321)
T 1w9c_A 69 NFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQA 148 (321)
T ss_dssp HTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHH
Confidence 3566666522 2111 135677777655 88899999999999888888876432 26899999998766666
Q ss_pred hccCChHH----HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCC------chhhhHHHHHHHHHHHHHhccC-
Q 003081 143 LVADPKRT----IDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRK------FDQVGKHLRRIWTAAFRAMDDI- 211 (850)
Q Consensus 143 Lv~d~~~~----i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~------~~~l~~~L~~i~~~l~~~ldD~- 211 (850)
+...+-.. -+++|..+++.++=++.+++..|-+.+...+-+++.... ..-+..|+-.|+...|.++.|.
T Consensus 149 i~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~ 228 (321)
T 1w9c_A 149 VNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTS 228 (321)
T ss_dssp HHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 65432111 257889999999999999998999999888888887432 1236678999999999998775
Q ss_pred -cHHHHHHH
Q 003081 212 -KETVRTAG 219 (850)
Q Consensus 212 -k~~VR~aA 219 (850)
|...+..+
T Consensus 229 Hk~gF~~q~ 237 (321)
T 1w9c_A 229 HTAGLTMHA 237 (321)
T ss_dssp CCTTHHHHH
T ss_pred hhccHHHHH
Confidence 33344443
No 118
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=80.93 E-value=1e+02 Score=36.88 Aligned_cols=258 Identities=12% Similarity=0.120 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHH
Q 003081 150 TIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDD--IKETVRTAGDKLCRSVT 227 (850)
Q Consensus 150 ~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD--~k~~VR~aA~~~~~~L~ 227 (850)
..+..++.++|-++.++-+++-.++..++.++..|..-.|. .-.-.++.++..+...|+. ..+.-|..+ +++.+.
T Consensus 332 ~~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~-~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~--aL~~l~ 408 (799)
T 1vsy_4 332 CHEEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPS-NAYLIYDKILIDLYDTLADQFINSRHRIIS--SLKQFT 408 (799)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCT-THHHHHHHHHHHHHHHHTTTTTTCHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCC-ccceehHHHHHHHHHHhccccccchhHHHH--HHHHHH
Confidence 45667788999999999999999999999999998765441 1122455667777777777 544445432 234443
Q ss_pred HHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcC------------------------
Q 003081 228 SLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAG------------------------ 283 (850)
Q Consensus 228 ~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g------------------------ 283 (850)
.++.-.... .+ -...+..+|..++ .|+...+..--..+++.+..++...+
T Consensus 409 ~~~r~lv~~-~~----yr~hl~~lL~l~L-pgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~ 482 (799)
T 1vsy_4 409 RVIRFIVMD-KL----YRVHITNVLSMLV-SKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQH 482 (799)
T ss_dssp TTHHHHTTS-TT----GGGHHHHHHHHHH-HTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHH
T ss_pred HHHHHHhcC-cc----cHHHHHHHHHHHh-ccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhh
Confidence 332111111 00 1112223333333 36654444433445666666655311
Q ss_pred ----------------------------cccccchHHHHHHHHHhccc-cchhhhhHHHHhhhh--cccchhhhH-----
Q 003081 284 ----------------------------IAIRPHLSDLVSCMLESLSS-LEDQGLNYIELHAAN--AGIQTEKLE----- 327 (850)
Q Consensus 284 ----------------------------~~l~P~lp~Lvp~LL~~Ls~-~ep~~~nyl~~~a~~--~~~~~d~id----- 327 (850)
..+..++-..+..+++.+.. .|....+++...... .+.+.+-.+
T Consensus 483 ~~~l~~~~~~~~~~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~~if~~~l~k 562 (799)
T 1vsy_4 483 FYHIKCGESSKTFRVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDDKIFNYFASL 562 (799)
T ss_dssp HHHHHTTCCSSSCCCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCHHHHHHHHHH
T ss_pred hhhhccccccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 11333444444555555542 333333332221110 000111111
Q ss_pred ---HHHHhhc--cCCcHHHH----HHHHHhhcChhhHhhHHHHHHHHHhccC--C----------Cc--hH-hhHHHHHH
Q 003081 328 ---NLRISIA--KGSPMWDT----LDLCINVVDTESLDQLVPHLARLVRSGI--G----------LN--TR-VGVASFIS 383 (850)
Q Consensus 328 ---~~r~~~~--~~s~l~ea----l~~~~~~ld~~~l~~lvp~L~~~lk~~~--~----------~~--tr-~~a~~~l~ 383 (850)
....+.. ...++.+. +..+++. +.+.+..++|.+...++..+ | .+ .+ .-...++.
T Consensus 563 ~~~fv~~n~~~~a~~~v~~L~~~~~~a~~~~-~P~~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~ 641 (799)
T 1vsy_4 563 LNRNFWSNDSFKEKDPNYELVTIPLAALVRR-NNGLSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALN 641 (799)
T ss_dssp HHHHHHSCSCCCSSSCCTHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHH
Confidence 1111111 11223333 4444444 44478888998887765311 1 00 11 12355666
Q ss_pred HHHHHhcccccchHHHHHHHHHHhhhhcCcHHHH
Q 003081 384 LLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAK 417 (850)
Q Consensus 384 ~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr 417 (850)
.++...|..+-+|.+.+++.+...+...++..+-
T Consensus 642 ~~v~~~g~~lL~y~deL~~il~~~~~~~k~~~~~ 675 (799)
T 1vsy_4 642 DVLRNCHESLLEYSDELITFMKYLYDNVTNPPLD 675 (799)
T ss_dssp HHHTTTGGGGGTTHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHhcCcHHHHccHHHHHHHHHHHHHHhcCcchH
Confidence 6677778888899999988877766334565543
No 119
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=75.13 E-value=89 Score=33.07 Aligned_cols=133 Identities=11% Similarity=0.130 Sum_probs=95.6
Q ss_pred HHhhHHHHHHHhh--hhhchhh--hhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChH----HHHHHHHHHHHHHHHhh
Q 003081 95 AAFGFSKIAKQAG--DALKPHL--RLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKR----TIDEHLDLIFDDLLIQS 166 (850)
Q Consensus 95 Aa~gl~~I~~~~~--~~l~p~L--~~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~----~i~~~~~~Il~~Ll~~l 166 (850)
.|.--|.|+..|- +.+..++ ...+-+++.|..-|+=.|..-+-..++-+.+.-+. .+..|++.++...-+.+
T Consensus 139 iAl~~G~mLRecir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll 218 (341)
T 1upk_A 139 IALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLL 218 (341)
T ss_dssp THHHHHHHHHHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred hHhHHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHh
Confidence 3444577777772 3444332 14455788899999999988887777776654443 34556788888888889
Q ss_pred CCCChhHHHHHHHHHHHHHccCCch-hhhHHH--HHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Q 003081 167 GSRLWRSREASCLSLADIIQGRKFD-QVGKHL--RRIWTAAFRAMDDIKETVRTAGDKLCRSVT 227 (850)
Q Consensus 167 ~~~~wRVReaa~~Al~~Ll~~~~~~-~l~~~L--~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~ 227 (850)
.+.++-+|.-|..-||+++-.+.-- .+..|+ ++-+..++.+|.|....++-.|....+.+.
T Consensus 219 ~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFV 282 (341)
T 1upk_A 219 HSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFV 282 (341)
T ss_dssp TCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeee
Confidence 9999999999999999999866533 333332 244555677888999999999988888664
No 120
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=74.75 E-value=2.7 Score=42.89 Aligned_cols=16 Identities=13% Similarity=0.044 Sum_probs=11.8
Q ss_pred CCCchhHHHHHHHHHH
Q 003081 260 ILSKVDSISKASIGVV 275 (850)
Q Consensus 260 L~s~~~evr~~a~~~L 275 (850)
|.++++.||..+...|
T Consensus 226 L~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 226 LDEPDPEVRLAIAGRL 241 (244)
T ss_dssp CCCCCHHHHHHHHCCC
T ss_pred ccCCCHHHHHHHHHHh
Confidence 5667899998876544
No 121
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=71.63 E-value=8 Score=48.21 Aligned_cols=111 Identities=13% Similarity=0.098 Sum_probs=69.8
Q ss_pred CCHHHHHHHHHHHHHHHHHhCcc----hhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCchHHH
Q 003081 531 SSWSSKRKSAKAICKLGEILGES----LSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAI 606 (850)
Q Consensus 531 ~s~~vr~~aa~alg~la~~~g~~----l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i 606 (850)
+++.+|+++..++|.++...... -.+.++.+...|.+++...+.+-+...|+|||-+.. +..++.+
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------p~~l~~l 476 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------PNSIKKI 476 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----------GGGHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC----------hhHHHHH
Confidence 46889999999999999765321 123467777888888865566667777777775532 1123334
Q ss_pred HHHHHHH---HhhcCHHHHHHHHHHHHHHHHHcCCchhHHhHHHHHHhh
Q 003081 607 VDMVSSA---CRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEM 652 (850)
Q Consensus 607 ~~~l~~e---~~r~~~~~R~~Al~~Lg~l~~~~~~~~~~~iv~~~l~~~ 652 (850)
.+.+-.. .......+|.+|+.+|..+....+ ..+.++++|+..+.
T Consensus 477 ~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p-~~v~~il~~i~~n~ 524 (1056)
T 1lsh_A 477 QRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP-RKVQEIVLPIFLNV 524 (1056)
T ss_dssp HTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH-HHHHHHHHHHHHCT
T ss_pred HHhhcCccccccccchHHHHHHHHHHHHhhhhch-HHHHHHHHHHhcCC
Confidence 4333211 112346789999999888764321 24667777776543
No 122
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=70.34 E-value=1.2e+02 Score=33.59 Aligned_cols=228 Identities=13% Similarity=0.110 Sum_probs=105.6
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhc
Q 003081 157 LIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDV 236 (850)
Q Consensus 157 ~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~ 236 (850)
..+..|+..+.+++.|-|+....-+..+- .-+-+-.+.+|++.....-.+. --.+.
T Consensus 162 ~Fi~~Ll~lfdSeDpRERd~LktiLhrIY--------------------~Kf~~~R~~Irk~i~nif~~fi----~e~e~ 217 (449)
T 2npp_B 162 KFVLQLLELFDSEDPRERDFLKTTLHRIY--------------------GKFLGLRAYIRKQINNIFYRFI----YETEH 217 (449)
T ss_dssp HHHHHHHHTTTSSTHHHHHHHHHHHHHHH--------------------HSCTTTHHHHHHHHHHHHHHHH----HTCSC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHh----cccCC
Confidence 36667777888888888876655444332 2222333444555432222221 00111
Q ss_pred ccCcchhHHhHHHHhHHHHhhccCCCc-hhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccc---cchhhhhHH
Q 003081 237 TLTEISDARQSMDIVLPFLLAEGILSK-VDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSS---LEDQGLNYI 312 (850)
Q Consensus 237 ~~~~~~~~~~~l~~lLP~Ll~~gL~s~-~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~---~ep~~~nyl 312 (850)
..| ..+++..+-.+ + .|..-+ .+|-+.+...+|.-|-+. +.+.-|-++|..++.+.+.. .-..++.++
T Consensus 218 ~nG----IaeLLeilgSI-i-nGfa~PLKeehk~fl~~vLlPLhk~--~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~L 289 (449)
T 2npp_B 218 HNG----IAELLEILGSI-I-NGFALPLKEEHKIFLLKVLLPLHKV--KSLSVYHPQLAYCVVQFLEKDSTLTEPVVMAL 289 (449)
T ss_dssp CSC----HHHHHHHHHHH-H-SSCCSSCCHHHHHHHHHTTGGGGGS--SCGGGTHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred CCC----HHHHHHHHHHH-H-hccCCCCcHHHHHHHHHHHHHHHcc--chhHHhHHHHHHHHHHHHhcCcHhHHHHHHHH
Confidence 212 22344443333 2 465433 245555666666555443 33566888888887776642 111122222
Q ss_pred HHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCC-CchHh--hHHHHHHHHHHHh
Q 003081 313 ELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIG-LNTRV--GVASFISLLVQKI 389 (850)
Q Consensus 313 ~~~a~~~~~~~d~id~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~-~~tr~--~a~~~l~~L~~~~ 389 (850)
-.+=..-+..++. ....-++.++..++...+..+++.+...+...+. ...++ .|..++.. .+.
T Consensus 290 Lk~WP~tns~Kev------------lFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N--~~i 355 (449)
T 2npp_B 290 LKYWPKTHSPKEV------------MFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNN--EYI 355 (449)
T ss_dssp HHTCCSSCHHHHH------------HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGC--HHH
T ss_pred HHhCCCCCchHHH------------HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCC--HHH
Confidence 1110000000010 1233456666777666555554444444422211 12222 23322110 001
Q ss_pred cccccchHHHHHHHHHHhhh----hcCcHHHHHHHHHHHHHHhhh
Q 003081 390 GMDIKPYTSMLLRLLFPVVK----EEKSAAAKRAFASACASVLKY 430 (850)
Q Consensus 390 ~~~~~py~~~lL~~Ll~~l~----~D~n~~Vr~~~a~alg~L~~~ 430 (850)
-.-+..+...+++.++..+. .+-|.+||..+..++..+.+.
T Consensus 356 ~~li~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e~ 400 (449)
T 2npp_B 356 MSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEM 400 (449)
T ss_dssp HHHHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHTT
T ss_pred HHHHHhchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 11234456667777776662 345778888877777666554
No 123
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=67.23 E-value=1.1e+02 Score=31.00 Aligned_cols=117 Identities=10% Similarity=0.030 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhccccc
Q 003081 516 YLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDI 595 (850)
Q Consensus 516 yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l 595 (850)
+++++++-+.....+++.++|+..+.-+++.+..- ..+.+.+++.|..-+++.+...-..++.+.+.+-...=..+
T Consensus 50 ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k----~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i 125 (257)
T 3gs3_A 50 LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK----VELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYL 125 (257)
T ss_dssp GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666667788889998888888887542 12467777777777777777766666666666643321111
Q ss_pred ccCC--C-------CchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHc
Q 003081 596 SAED--P-------TTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAF 636 (850)
Q Consensus 596 ~~~~--~-------~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~ 636 (850)
.... + ..+..+...++.-....|..+|.+|++-+..++-.+
T Consensus 126 ~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~q 175 (257)
T 3gs3_A 126 CSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQ 175 (257)
T ss_dssp TTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHT
T ss_pred hcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhh
Confidence 1100 0 023344555555566678999999998888877655
No 124
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=66.48 E-value=47 Score=30.38 Aligned_cols=108 Identities=17% Similarity=0.134 Sum_probs=71.9
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccC-
Q 003081 520 IVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAE- 598 (850)
Q Consensus 520 Il~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~- 598 (850)
|-..-...+.+++|..=- -|.+++..-. . .-...+..|.+.|..+........|..|-.++.+|+..+..+
T Consensus 10 iekAT~~~l~~~dw~~il----eicD~I~~~~--~--~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~ev 81 (140)
T 3ldz_A 10 VEKATSEMNTAEDWGLIL----DICDKVGQSR--T--GPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEV 81 (140)
T ss_dssp HHHHTCTTSSSCCHHHHH----HHHHHHTTST--T--HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHcCCCCCCcCHHHHH----HHHHHHHCCC--c--CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 333334446678886422 3444443211 1 235678888999988887777777888888899998755311
Q ss_pred -CCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCc
Q 003081 599 -DPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDP 639 (850)
Q Consensus 599 -~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~~~ 639 (850)
...|++.++..+ ++.++.+|...+..+.....+|+++
T Consensus 82 as~~Fl~el~~l~----~~~~~~Vk~kil~li~~W~~~f~~~ 119 (140)
T 3ldz_A 82 CSRDFASEVSNVL----NKGHPKVCEKLKALMVEWTDEFKND 119 (140)
T ss_dssp SSHHHHHHHHHHH----HHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHh----ccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 123555555443 4678999999999999999999764
No 125
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=63.39 E-value=23 Score=32.78 Aligned_cols=74 Identities=12% Similarity=-0.030 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhh-HHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Q 003081 515 LYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNY-HHVLLESIMKEVPGRLWEGKDALLYAIGSIS 588 (850)
Q Consensus 515 ~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~-l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~ 588 (850)
.|.++|++.+.+.+.....+.|-.+.+.+.+++...|..+... -+.+.+.+......-+.+.|.++.+-+...-
T Consensus 39 ~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~ 113 (144)
T 1sz9_A 39 SCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWL 113 (144)
T ss_dssp GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 5778899999988887788999999999999999998766553 3444455555554445677888777665443
No 126
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=63.33 E-value=81 Score=34.14 Aligned_cols=122 Identities=11% Similarity=0.033 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHh
Q 003081 154 HLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRL 233 (850)
Q Consensus 154 ~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~ 233 (850)
.++.+++.++.-..+++-.||.-...-+.+... .-..++..+++.+..++.|..+.|-+.+..++..+-....+.
T Consensus 60 Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~-----~~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~ 134 (386)
T 3o2t_A 60 LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACK-----RDIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQW 134 (386)
T ss_dssp GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHH-----HCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777778899999888866666653 234456788888888888888888777666666666555554
Q ss_pred hhcccCcchhHHhHHH---HhHHHHhhccCCCchhHHHHHHHHHHHHHHHh
Q 003081 234 CDVTLTEISDARQSMD---IVLPFLLAEGILSKVDSISKASIGVVMKLVKG 281 (850)
Q Consensus 234 ~~~~~~~~~~~~~~l~---~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~ 281 (850)
+-...+........+. .+--.++.. +.+.+.-||-.++..+..++-.
T Consensus 135 i~~~~~~~~~~e~~W~~m~~lK~~Il~~-~ds~n~GVrl~aiKFle~VIl~ 184 (386)
T 3o2t_A 135 MVKSRVISELQEACWDMVSAMAGDIILL-LDSDNDGIRTHAIKFVEGLIVT 184 (386)
T ss_dssp HHHC-CCCHHHHHHHHHHHHHHHHHHHG-GGCSSHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCcchhHHHHHHHHHHHHHHHHHH-hccCCcchHHHHHHHHHHHHHH
Confidence 4322111111122222 222333321 3446678888888888887654
No 127
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=62.26 E-value=2e+02 Score=32.05 Aligned_cols=183 Identities=7% Similarity=0.065 Sum_probs=104.8
Q ss_pred CCchhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhh
Q 003081 449 DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGI 528 (850)
Q Consensus 449 ~d~~~r~~~~~~l~al~~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L 528 (850)
+++..++.++++|..+.+..| .+...-+-..+...-|.|..||..+.+-+-.+|.. .+++.|.+++.+.|
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP----~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~QlL 109 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFP----ELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQLL 109 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCG----GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhhCh----hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHHHH
Confidence 455556677777777766544 34444555445556677788887665555455543 67899999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHH
Q 003081 529 ASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVD 608 (850)
Q Consensus 529 ~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~ 608 (850)
+..+..-....-.+|-.+...-+.. .+..++..+.. + +...||.+|+.+..=+...+..+ +...+-.
T Consensus 110 qtdd~~E~~~V~~sL~sllk~Dpk~---tl~~lf~~i~~---~-~e~~Rer~lkFi~~kl~~l~~~~------l~~E~E~ 176 (507)
T 3u0r_A 110 QTDDSAEFNLVNNALLSIFKMDAKG---TLGGLFSQILQ---G-EDIVRERAIKFLSTKLKTLPDEV------LTKEVEE 176 (507)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHCHHH---HHHHHHHHHHH---S-CHHHHHHHHHHHHHHGGGSCTTT------SCHHHHH
T ss_pred hccchHHHHHHHHHHHHHHhcChHH---HHHHHHHHHcc---c-chHHHHHHHHHHHHHHhhcchhh------ccHHHHH
Confidence 9888776666667777666532111 12223333333 2 46789999987766555443222 2244555
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHcC---CchhHHhHHHHHHhhcc
Q 003081 609 MVSSACRKKIKKYREAAFSCLEQVIKAFR---DPKFFNIIFPLLFEMCG 654 (850)
Q Consensus 609 ~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~---~~~~~~iv~~~l~~~~~ 654 (850)
.++.++++--.++-..=+..+=.++..++ ...-.+.+.+++.+..+
T Consensus 177 ~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~ 225 (507)
T 3u0r_A 177 LILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQAD 225 (507)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHh
Confidence 55555554333343344444445555443 22223444555555543
No 128
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=62.08 E-value=50 Score=41.00 Aligned_cols=177 Identities=9% Similarity=0.011 Sum_probs=95.6
Q ss_pred CCchHHHHHHHHhccch---hhhhhhhHHhhHHHHHHHh-hhh-h--chhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHh
Q 003081 71 GQPDLIYKFMDLANYQV---SLNSKRGAAFGFSKIAKQA-GDA-L--KPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSL 143 (850)
Q Consensus 71 g~p~lv~~fm~la~~~~---~w~sr~gAa~gl~~I~~~~-~~~-l--~p~L~~lvp~L~r~~~Dp~~~VR~a~~~iw~~L 143 (850)
++++++-.|..++.+.. .+.-|+.+..|+|.++.+. ... . ...+..+...|.......+..-+.......+-+
T Consensus 388 Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~ 467 (1056)
T 1lsh_A 388 ATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNA 467 (1056)
T ss_dssp CCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence 45578888888886542 2345678899998888764 210 0 112222333332222333333333334333333
Q ss_pred ccCChHHHHHHHHHHHHHHHHhh-------CCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHh--ccCcHH
Q 003081 144 VADPKRTIDEHLDLIFDDLLIQS-------GSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAM--DDIKET 214 (850)
Q Consensus 144 v~d~~~~i~~~~~~Il~~Ll~~l-------~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~l~~~l--dD~k~~ 214 (850)
-. +.+++.|...+ .+..-|||.+|+.||..+.... +. .+-+.++.++ .+....
T Consensus 468 g~----------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-p~-------~v~~il~~i~~n~~e~~E 529 (1056)
T 1lsh_A 468 GQ----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-PR-------KVQEIVLPIFLNVAIKSE 529 (1056)
T ss_dssp TC----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-HH-------HHHHHHHHHHHCTTSCHH
T ss_pred CC----------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc-hH-------HHHHHHHHHhcCCCCChH
Confidence 21 22333333333 2334699999999987775321 12 2233344445 345678
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCc
Q 003081 215 VRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGI 284 (850)
Q Consensus 215 VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~ 284 (850)
||-+|...+ .+. .|. ...+..+.-.+. .+.+.+|+.|....|-.+++...+
T Consensus 530 vRiaA~~~L-------m~t-~P~-------~~~l~~ia~~l~----~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 530 LRIRSCIVF-------FES-KPS-------VALVSMVAVRLR----REPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp HHHHHHHHH-------HHT-CCC-------HHHHHHHHHHHT----TCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHH-------HHH-CcC-------HHHHHHHHHHHh----hCchHHHHHHHHHHHHHHHhcCCc
Confidence 999985332 111 221 235666665543 236789999999999999876554
No 129
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=61.71 E-value=1.7e+02 Score=31.00 Aligned_cols=189 Identities=13% Similarity=0.078 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHH---HH------HHHHHHHHHhhcCCchhhHHHHHHHHHHHh
Q 003081 396 YTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPS---QA------QKLIEETAALHIDDKNSQISCAILLKSYSS 466 (850)
Q Consensus 396 y~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~---~v------~~li~~l~~~~~~d~~~r~~~~~~l~al~~ 466 (850)
|...++..++..+ ..=..+.|+.++..++.+++..... .+ .+++..+...| ++++.-..|+.++....+
T Consensus 75 ~~~dll~~Li~~l-~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY-e~~diAl~~G~mLRecir 152 (341)
T 1upk_A 75 YNSGLLSTLVADL-QLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY-ESPEIALNCGIMLRECIR 152 (341)
T ss_dssp HHHSHHHHHHHTG-GGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG-GSTTTHHHHHHHHHHHHT
T ss_pred HHhCHHHHHHHhc-ccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh-ccchhHhHHHHHHHHHHH
Confidence 5566777777777 4567788888888888888753321 11 12333444455 345555666666665544
Q ss_pred hchhhhhh---hHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHH----hhHHHHHHHHHHhhcCCCHHHHHHH
Q 003081 467 VASDVLSG---YHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQ----LYLGEIVSLICEGIASSSWSSKRKS 539 (850)
Q Consensus 467 ~~~~~f~~---~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~----~yl~eIl~ll~~~L~d~s~~vr~~a 539 (850)
+- .+.. +.+.|- -+|.....+.=++..-+..++.++.......+. ...+.+.......+.+++.-+|+++
T Consensus 153 ~e--~la~~iL~~~~f~-~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQS 229 (341)
T 1upk_A 153 HE--PLAKIILWSEQFY-DFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS 229 (341)
T ss_dssp SH--HHHHHHHHSGGGG-HHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred hH--HHHHHHhccHHHH-HHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHH
Confidence 31 1111 001111 112222222222332222333333333333333 3346677888888999999999999
Q ss_pred HHHHHHHHHHhC--cchhhhH--HHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 003081 540 AKAICKLGEILG--ESLSNYH--HVLLESIMKEVPGRLWEGKDALLYAIGSIST 589 (850)
Q Consensus 540 a~alg~la~~~g--~~l~~~l--~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~ 589 (850)
.+.||++...-. ..+..|+ +.-+-+++.-|++++-..+-..+..+--++.
T Consensus 230 lKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 230 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 999999996422 2233332 4556677777788777777777776665554
No 130
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=54.11 E-value=1.2e+02 Score=28.47 Aligned_cols=114 Identities=18% Similarity=0.144 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccc
Q 003081 515 LYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKD 594 (850)
Q Consensus 515 ~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~ 594 (850)
+|-.-|-......+.+++|..=- -|.+++..-.. .-...+..|.+.|+.+........|..|-.++.+|+..
T Consensus 15 p~~~~IekATs~~~~~~Dw~~~l----eicD~I~~~~~----~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~ 86 (163)
T 1x5b_A 15 PFEQDVEKATNEYNTTEDWSLIM----DICDKVGSTPN----GAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKI 86 (163)
T ss_dssp TTHHHHHHHTCTTCSSCCHHHHH----HHHHHHHHSSS----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHH
T ss_pred hHHHHHHHHcCCCCCCcCHHHHH----HHHHHHhCCCc----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 44433333333445678897633 45555554221 23567778888998888778888888888999999875
Q ss_pred cccC--CCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCc
Q 003081 595 ISAE--DPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDP 639 (850)
Q Consensus 595 l~~~--~~~~~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~~~ 639 (850)
+..+ ...|++.+++.+- ++.++.+|..++..+-....+|+++
T Consensus 87 Fh~evas~~Fl~el~~l~~---~~~~~~Vk~kil~li~~W~~~f~~~ 130 (163)
T 1x5b_A 87 FHLEVCSRDFATEVRAVIK---NKAHPKVCEKLKSLMVEWSEEFQKD 130 (163)
T ss_dssp HHHHHTSHHHHHHHHHHHH---TTCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHhhHHHHHHHHHHHc---cCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 5321 1235666555442 3467899999999999999999764
No 131
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=50.44 E-value=56 Score=32.29 Aligned_cols=75 Identities=11% Similarity=0.006 Sum_probs=55.6
Q ss_pred hHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhH
Q 003081 116 LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGK 195 (850)
Q Consensus 116 ~lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~ 195 (850)
.+.+.++.+..|+++-+||++.-.. ... .-..+.+.+++-+-..+.|+++=||.|..++|.++... .++.+.+
T Consensus 124 ~~~~~i~~W~~s~~~w~rR~ai~~~---l~~---~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~-~~~~v~~ 196 (220)
T 2b6c_A 124 ELPTIFALFYGAENFWNRRVALNLQ---LML---KEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT-NPQWVEE 196 (220)
T ss_dssp GHHHHHHHHTTCSSHHHHHHHHHTT---TTC---GGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT-CHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH---HHH---HHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh-CHHHHHH
Confidence 4667788999999999999987522 222 11345677777666689999999999999999998654 4455666
Q ss_pred HH
Q 003081 196 HL 197 (850)
Q Consensus 196 ~L 197 (850)
|+
T Consensus 197 fl 198 (220)
T 2b6c_A 197 LM 198 (220)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 132
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=49.03 E-value=92 Score=28.81 Aligned_cols=111 Identities=14% Similarity=0.110 Sum_probs=70.2
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccC--CCCch
Q 003081 526 EGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAE--DPTTP 603 (850)
Q Consensus 526 ~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~--~~~~~ 603 (850)
..+.+++|.. +-++|..+...- ..-...+..|.+.+..+....-...|..|-.++.+|+..+..+ ...|+
T Consensus 22 ~~l~~~dw~~-------ileicD~I~~~~-~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl 93 (149)
T 3g2s_A 22 PLNKELDWAS-------INGFCEQLNEDF-EGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFL 93 (149)
T ss_dssp TTCSSCCHHH-------HHHHHHHGGGSS-SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHH
T ss_pred CCCCCcCHHH-------HHHHHHHHHCCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHH
Confidence 3456678864 233443332221 1235677888899988888888888888889999998765311 12344
Q ss_pred HHHHHHHHHH--HhhcCHHHHHHHHHHHHHHHHHcCCc-hhHHh
Q 003081 604 FAIVDMVSSA--CRKKIKKYREAAFSCLEQVIKAFRDP-KFFNI 644 (850)
Q Consensus 604 ~~i~~~l~~e--~~r~~~~~R~~Al~~Lg~l~~~~~~~-~~~~i 644 (850)
+.+++.+... -.+.+..+|...+..+.....+|+++ .+.+.
T Consensus 94 ~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~i~~~ 137 (149)
T 3g2s_A 94 NELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEEVKIAEA 137 (149)
T ss_dssp HHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCCCchHHHH
Confidence 4443333211 01467899999999999999999754 34433
No 133
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=49.03 E-value=90 Score=28.81 Aligned_cols=75 Identities=12% Similarity=-0.005 Sum_probs=57.4
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhH--HHHHHHHHHhcCC-----C-ChhhHHHHHHHHHHHHH
Q 003081 518 GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYH--HVLLESIMKEVPG-----R-LWEGKDALLYAIGSIST 589 (850)
Q Consensus 518 ~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l--~~llp~L~~~L~~-----r-~~~gKe~vL~aL~~l~~ 589 (850)
.+.+..+.+.+.+.+..+.-.|...+..++..+|..|...+ ..++.-|.+-+.. + ...+|+++++.+-....
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 44567777888999999999999999999999998885542 5566667666653 2 36789999988888776
Q ss_pred hcc
Q 003081 590 SCH 592 (850)
Q Consensus 590 ~~~ 592 (850)
.++
T Consensus 117 ~f~ 119 (148)
T 1mhq_A 117 WFP 119 (148)
T ss_dssp HCT
T ss_pred HcC
Confidence 543
No 134
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=48.30 E-value=87 Score=28.98 Aligned_cols=75 Identities=15% Similarity=0.082 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhh--HHHHHHHHHHhcCC-----C-ChhhHHHHHHHHHHHHH
Q 003081 518 GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNY--HHVLLESIMKEVPG-----R-LWEGKDALLYAIGSIST 589 (850)
Q Consensus 518 ~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~--l~~llp~L~~~L~~-----r-~~~gKe~vL~aL~~l~~ 589 (850)
.+.+..+.+.+.+++..+.-.|...+..+++.+|..|... -..++.-|.+.+.. + ...+|+++++.+-....
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 4566777788889999999999999999999999887543 24455556666543 2 36789999999988877
Q ss_pred hcc
Q 003081 590 SCH 592 (850)
Q Consensus 590 ~~~ 592 (850)
.++
T Consensus 127 ~f~ 129 (149)
T 3g2s_A 127 GLP 129 (149)
T ss_dssp HCT
T ss_pred HhC
Confidence 554
No 135
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=47.98 E-value=3.8e+02 Score=33.77 Aligned_cols=160 Identities=8% Similarity=0.009 Sum_probs=92.6
Q ss_pred HHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHhhc-CCchhhHHHHHHHHHHH
Q 003081 387 QKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI-DDKNSQISCAILLKSYS 465 (850)
Q Consensus 387 ~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L~~~~~~~~v~~li~~l~~~~~-~d~~~r~~~~~~l~al~ 465 (850)
..+...++.|...++...-..+ ..+++.|+.-....-.++.+....-.-++++..+.+... +....-.++.+++..++
T Consensus 388 ~~h~~vL~~~f~siL~La~~Ll-~S~~~~v~~Fg~~lY~~lF~~fd~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~ 466 (1323)
T 3s4w_B 388 STHYLVLKDICPSILLLAQTLF-HSQDQRIILFGSLLYKYAFKFFDTYCQQEVVGALVTHVCSGTEAEVDTALDVLLELI 466 (1323)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHH-TSSSHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHH
Confidence 4455567888888888777777 467788877766666667776654334455555544332 33333345677788888
Q ss_pred hhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcC---CChhhHHhhHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 003081 466 SVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTS---GDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKA 542 (850)
Q Consensus 466 ~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~---~~~~~i~~yl~eIl~ll~~~L~d~s~~vr~~aa~a 542 (850)
...+..+.++...+.+++-....-....+|..| .++..++- ..+. ....+++.=++.+.+++++...|+.+.-+
T Consensus 467 ~~~~~~l~~~a~~l~giLD~l~~l~~~QiRklf-~iL~~laf~~~~~~~--~~i~ddl~ivIRKQLs~~~~~~KriGIIG 543 (1323)
T 3s4w_B 467 VLNASAMRLNAAFVKGILDYLENMSPQQIRKIF-CILSTLAFSQQPGTS--NHIQDDMHLVIRKQLSSTVFKYKLIGIIG 543 (1323)
T ss_dssp HHCHHHHHHTHHHHHGGGGGGGGCCHHHHHHHH-HHHHHHHHHHCSSCC--CHHHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred hcCHHHHhHHHHHHHHHHHhhcCCCHHHHHHHH-HHHHHHHcCCCCCcc--hhhHHhHHHHHHHHHhCCchhhhhhhHHH
Confidence 877877777666555544222222345677665 33322221 1101 01235555566677888888888876544
Q ss_pred HHHHHHHh
Q 003081 543 ICKLGEIL 550 (850)
Q Consensus 543 lg~la~~~ 550 (850)
.-.++...
T Consensus 544 av~~v~~~ 551 (1323)
T 3s4w_B 544 AVTMAGIM 551 (1323)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 44444433
No 136
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=47.08 E-value=56 Score=29.86 Aligned_cols=75 Identities=4% Similarity=-0.105 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhH--HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcc
Q 003081 518 GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYH--HVLLESIMKEVPGRLWEGKDALLYAIGSISTSCH 592 (850)
Q Consensus 518 ~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l--~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~ 592 (850)
.+.+..+.+.+.+.+..+.-.|...+..+++..|..|...+ ...+..|...++.....+|+++++.+-.....++
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~ 117 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK 117 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhC
Confidence 45677788888899998988888999999999998776321 2233333333322356899999998888877554
No 137
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=47.07 E-value=1e+02 Score=30.58 Aligned_cols=104 Identities=18% Similarity=0.217 Sum_probs=71.8
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhccccccc--CCCCc
Q 003081 525 CEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISA--EDPTT 602 (850)
Q Consensus 525 ~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~--~~~~~ 602 (850)
...+.+++|+.= .-|.+++..-. . .-...+..|.+.|+.+........|..|-.++.+|+..+.. ....|
T Consensus 18 ~~~~~~~dw~~i----leicD~I~~~~--~--~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~f 89 (226)
T 3zyq_A 18 SQLLLETDWESI----LQICDLIRQGD--T--QAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQT 89 (226)
T ss_dssp CTTCSSCCHHHH----HHHHHHHHTTS--S--CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHH
T ss_pred CCCCCCcCHHHH----HHHHHHHhCCC--c--cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHH
Confidence 344567788752 34555554321 1 13667888999998888888888888888999999875432 12345
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCc
Q 003081 603 PFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDP 639 (850)
Q Consensus 603 ~~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~~~ 639 (850)
++.+...+- +..+..+|..++..+.....+|+++
T Consensus 90 l~~l~~l~~---~~~~~~Vk~kil~li~~W~~~f~~~ 123 (226)
T 3zyq_A 90 MEELKDLLK---RQVEVNVRNKILYLIQAWAHAFRNE 123 (226)
T ss_dssp HHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHhc---cCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 555555442 2367899999999999999999754
No 138
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=45.24 E-value=62 Score=30.46 Aligned_cols=75 Identities=5% Similarity=-0.077 Sum_probs=53.2
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhH--HHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHhcc
Q 003081 518 GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYH--HVLLESIMKEVPGR-LWEGKDALLYAIGSISTSCH 592 (850)
Q Consensus 518 ~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l--~~llp~L~~~L~~r-~~~gKe~vL~aL~~l~~~~~ 592 (850)
.+.+..|.+.+.+.+..+.-.|...+..+++.+|..|...+ ..++..|..-+..+ ...+|+++++.+-.....++
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~ 128 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQ 128 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 45667777888899999999999999999999998776432 22444444333332 36899999988777766544
No 139
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=43.53 E-value=6e+02 Score=32.04 Aligned_cols=164 Identities=9% Similarity=0.008 Sum_probs=95.5
Q ss_pred hhchhhhhhhHhhHhHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHHhhcCC-CHHHHHHHHHHHH
Q 003081 466 SVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASS-SWSSKRKSAKAIC 544 (850)
Q Consensus 466 ~~~~~~f~~~~~~vlP~l~~~~~d~~~~v~~~~~~v~~~l~~~~~~~i~~yl~eIl~ll~~~L~d~-s~~vr~~aa~alg 544 (850)
......++.|++.++-+.-..++..++.|++.....+..+-..... -|-++|+..+.....+. +.+|.. |...+.
T Consensus 388 ~~h~~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~---~~qqeVl~~Lv~hi~sg~~~eVd~-ALdvL~ 463 (1323)
T 3s4w_B 388 STHYLVLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDT---YCQQEVVGALVTHVCSGTEAEVDT-ALDVLL 463 (1323)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCH---HHHHHHHHHHHHHHHHCCHHHHHH-HHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccc---hhHHHHHHHHHhhhcCCCcHHHHH-HHHHHH
Confidence 3334566777777776665556677788887766665544433321 34577887777764444 344443 777788
Q ss_pred HHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHH
Q 003081 545 KLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREA 624 (850)
Q Consensus 545 ~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~~~~~~~~~i~~~l~~e~~r~~~~~R~~ 624 (850)
.++...+..+.++-..+ ..+.+.+..=+..-=.+++.-|+.++-.-+.. ......+.+-=++.+++...+..|++.
T Consensus 464 ~L~~~~~~~l~~~a~~l-~giLD~l~~l~~~QiRklf~iL~~laf~~~~~---~~~~i~ddl~ivIRKQLs~~~~~~Kri 539 (1323)
T 3s4w_B 464 ELIVLNASAMRLNAAFV-KGILDYLENMSPQQIRKIFCILSTLAFSQQPG---TSNHIQDDMHLVIRKQLSSTVFKYKLI 539 (1323)
T ss_dssp HHHHHCHHHHHHTHHHH-HGGGGGGGGCCHHHHHHHHHHHHHHHHHHCSS---CCCHHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHhcCHHHHhHHHHHH-HHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCC---cchhhHHhHHHHHHHHHhCCchhhhhh
Confidence 88876666666544433 33334443333333344566666665432211 011234556667778888888999888
Q ss_pred HHHHHHHHHHHcC
Q 003081 625 AFSCLEQVIKAFR 637 (850)
Q Consensus 625 Al~~Lg~l~~~~~ 637 (850)
.+-..-.+++.+.
T Consensus 540 GIIGav~~v~~~~ 552 (1323)
T 3s4w_B 540 GIIGAVTMAGIMA 552 (1323)
T ss_dssp HHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHH
Confidence 7765555666553
No 140
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=42.34 E-value=27 Score=34.94 Aligned_cols=76 Identities=12% Similarity=0.017 Sum_probs=55.2
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHH
Q 003081 117 LIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKH 196 (850)
Q Consensus 117 lvp~L~r~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~ 196 (850)
+.+.++.+..|+++-+||++.-.. ..- .....++.+++-+...+.|+++-||.|..++|.++... .++.+.+|
T Consensus 132 ~~~~l~~W~~s~~~w~rR~ai~~~---l~~---~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~-~p~~v~~f 204 (232)
T 3jxy_A 132 ISAYIPKWIASDNIWLQRAAILFQ---LKY---KQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKT-NPDVVWEY 204 (232)
T ss_dssp GGGTHHHHHHSSCHHHHHHHHHTT---TTC---GGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT-CHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHH---HHH---HhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh-CHHHHHHH
Confidence 566778889999999999986532 211 12334556666677789999999999999999998543 44566666
Q ss_pred HHH
Q 003081 197 LRR 199 (850)
Q Consensus 197 L~~ 199 (850)
+.+
T Consensus 205 l~~ 207 (232)
T 3jxy_A 205 VQN 207 (232)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 141
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=41.73 E-value=1e+02 Score=29.19 Aligned_cols=75 Identities=15% Similarity=0.038 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhH--HHHHHHHHHhcCC------CChhhHHHHHHHHHHHHH
Q 003081 518 GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYH--HVLLESIMKEVPG------RLWEGKDALLYAIGSIST 589 (850)
Q Consensus 518 ~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l--~~llp~L~~~L~~------r~~~gKe~vL~aL~~l~~ 589 (850)
.+.+..|.+.+.+.+..+.-.|...+..+++.+|..|...+ ..++.-|...+.. ....+|+++++.+-....
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 45667777888999999999999999999999998776432 3445555555532 236789999988888776
Q ss_pred hcc
Q 003081 590 SCH 592 (850)
Q Consensus 590 ~~~ 592 (850)
.++
T Consensus 129 ~f~ 131 (171)
T 1juq_A 129 ALP 131 (171)
T ss_dssp HCT
T ss_pred HcC
Confidence 543
No 142
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=40.88 E-value=1.1e+02 Score=27.95 Aligned_cols=95 Identities=8% Similarity=0.088 Sum_probs=52.8
Q ss_pred CCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHH---
Q 003081 127 DPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTA--- 203 (850)
Q Consensus 127 Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~~~~~~~l~~~L~~i~~~--- 203 (850)
||.|-=-..|..|-+.....+ .+.+..||+.|++.+++++|++..-|..-|.-|+...+ +.+...+.+=...
T Consensus 23 d~~~~pgylm~EIA~~T~~s~----~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs-~~f~~~~r~~~~~Ik~ 97 (140)
T 1vdy_A 23 EDKVAPVYKLEEICDLLRSSH----VSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSG-SEFRREMQRNSVAVRN 97 (140)
T ss_dssp CSSCCCHHHHHHHHHHHHHSC----HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSC-HHHHHHHHHTTHHHHT
T ss_pred CCCCCcHHHHHHHHHHHHhcc----hhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCC-HHHHHHHHHhHHHHHH
Confidence 333333334555554433211 23568899999999999999988888877777775333 3333322222111
Q ss_pred H--HHHhcc------CcHHHHHHHHHHHHHH
Q 003081 204 A--FRAMDD------IKETVRTAGDKLCRSV 226 (850)
Q Consensus 204 l--~~~ldD------~k~~VR~aA~~~~~~L 226 (850)
+ |+..+| ....||++|..++..|
T Consensus 98 l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll 128 (140)
T 1vdy_A 98 LFHYKGHPDPLKGDALNKAVRETAHETISAI 128 (140)
T ss_dssp TTTCCCCCCTTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 1 111223 3356888886665544
No 143
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=40.21 E-value=59 Score=32.52 Aligned_cols=69 Identities=7% Similarity=-0.069 Sum_probs=52.7
Q ss_pred hhHHHHHHhhcCCCCHhHHHHHHH----HHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHH
Q 003081 115 RLLIPKLVRFQYDPDKNVQDAMAH----IWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADII 185 (850)
Q Consensus 115 ~~lvp~L~r~~~Dp~~~VR~a~~~----iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll 185 (850)
+...+.++.+..|++.-+|++... ....+. .+..-+.+++.+++.+..++.|+++.||.|..++|.++-
T Consensus 107 ~~~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~--~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~g 179 (235)
T 1t06_A 107 NIAQDVADKWIASGDELKMSAGWSCYCWLLGNRK--DNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVA 179 (235)
T ss_dssp SSHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSC--GGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhcc--ccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHH
Confidence 346777888899999999999866 322222 111235678888998888999999999999999998764
No 144
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=40.02 E-value=2.1e+02 Score=29.07 Aligned_cols=117 Identities=18% Similarity=0.194 Sum_probs=69.4
Q ss_pred HHHHHHHhhhcCCchHHHHHHHHhccchhhhhhhhHHhhH-HHHHHHhh---hhhchhhh-hHHHHHHhhc-CCCCHhHH
Q 003081 60 YKELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGF-SKIAKQAG---DALKPHLR-LLIPKLVRFQ-YDPDKNVQ 133 (850)
Q Consensus 60 yk~l~~lA~~~g~p~lv~~fm~la~~~~~w~sr~gAa~gl-~~I~~~~~---~~l~p~L~-~lvp~L~r~~-~Dp~~~VR 133 (850)
-+||.++---+..|.+- +.-..|--.+.++ ..|+++.. ..++.+++ -++|.|=..- ..|...+|
T Consensus 50 LQEIisiYp~lspp~Lt----------~~~SnRVcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LR 119 (268)
T 2fv2_A 50 LQEIVNIYPSINPPTLT----------AHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLR 119 (268)
T ss_dssp HHHHHHTGGGBTTBCCC----------HHHHHHHHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHH
T ss_pred HHHHHHHcccCCCcccC----------HHHHhHHHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhh
Confidence 35666666666555321 1112333455665 66666441 22333333 4666654322 24678999
Q ss_pred HHHHHHHHHhccCChHHHHHHH--HHHHHHHHHhhCCCChhHHHHHHHHHHHHHc
Q 003081 134 DAMAHIWKSLVADPKRTIDEHL--DLIFDDLLIQSGSRLWRSREASCLSLADIIQ 186 (850)
Q Consensus 134 ~a~~~iw~~Lv~d~~~~i~~~~--~~Il~~Ll~~l~~~~wRVReaa~~Al~~Ll~ 186 (850)
=+...+.++|++.....+-.|+ .+|+|-++..|...+--.+..|..-+..++.
T Consensus 120 LtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~ 174 (268)
T 2fv2_A 120 LTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILL 174 (268)
T ss_dssp HHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhc
Confidence 9999999999954333344354 5589999998876665666777766666654
No 145
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=37.30 E-value=2.7e+02 Score=26.21 Aligned_cols=57 Identities=7% Similarity=0.018 Sum_probs=38.7
Q ss_pred cCCCCHhHHHHHHHHHHHhccCChHHHHHHH--HHHHHHHHHhhCC------CChhHHHHHHHHH
Q 003081 125 QYDPDKNVQDAMAHIWKSLVADPKRTIDEHL--DLIFDDLLIQSGS------RLWRSREASCLSL 181 (850)
Q Consensus 125 ~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~--~~Il~~Ll~~l~~------~~wRVReaa~~Al 181 (850)
+..+||+|+--+..++..|++++...+...+ ..++.+|...+.. .+.+||+-+...+
T Consensus 59 l~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li 123 (171)
T 1juq_A 59 IQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELL 123 (171)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHH
Confidence 3679999999999999999998754332222 4456666665542 3467777766444
No 146
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=36.96 E-value=1.9e+02 Score=28.35 Aligned_cols=103 Identities=15% Similarity=0.114 Sum_probs=70.6
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhccccccc--CCCCch
Q 003081 526 EGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISA--EDPTTP 603 (850)
Q Consensus 526 ~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~~~~l~~--~~~~~~ 603 (850)
..+.+++|..- .-|.+++..-.. .-...+..|.+.|..+........|..|-.++.+|+..+.. ...+|+
T Consensus 16 ~~~~~~dw~~~----leicd~i~~~~~----~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl 87 (220)
T 1dvp_A 16 HLRLEPDWPSI----LLICDEINQKDV----TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENC 87 (220)
T ss_dssp TTCSSCCHHHH----HHHHHHHHTTSS----CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHH
T ss_pred CCCCCcCHHHH----HHHHHhhcCCCc----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHH
Confidence 34567888753 235555543221 23567778888898888878888888888999999865532 123466
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCc
Q 003081 604 FAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDP 639 (850)
Q Consensus 604 ~~i~~~l~~e~~r~~~~~R~~Al~~Lg~l~~~~~~~ 639 (850)
+.+++.+-. ..+..+|..++..+.....+|+++
T Consensus 88 ~~l~~l~~~---~~~~~Vk~kil~li~~W~~~f~~~ 120 (220)
T 1dvp_A 88 EMFSSFLES---TPHENVRQKMLELVQTWAYAFRSS 120 (220)
T ss_dssp HHHHHHHHH---CSCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHhcC---CCcHHHHHHHHHHHHHHHHHhccc
Confidence 666654432 457899999999999999999754
No 147
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=36.25 E-value=2.7e+02 Score=28.24 Aligned_cols=98 Identities=15% Similarity=0.195 Sum_probs=56.2
Q ss_pred HhhcCCCCHhHHHH--H---HHHHHHhccCCh---HHHHHHHHHHHHHHHHhh-CCCC-hhHHHHHHHHHHHHHccCCch
Q 003081 122 VRFQYDPDKNVQDA--M---AHIWKSLVADPK---RTIDEHLDLIFDDLLIQS-GSRL-WRSREASCLSLADIIQGRKFD 191 (850)
Q Consensus 122 ~r~~~Dp~~~VR~a--~---~~iw~~Lv~d~~---~~i~~~~~~Il~~Ll~~l-~~~~-wRVReaa~~Al~~Ll~~~~~~ 191 (850)
|.+..-|+-..+.+ . ..+...++++|. ..++.|++..+=..+..- .++. -..|-++..-+|.++.... +
T Consensus 57 Yp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd-~ 135 (268)
T 2fv2_A 57 YPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDE-Q 135 (268)
T ss_dssp GGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCC-H
T ss_pred cccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCc-H
Confidence 44445555444433 2 234455555552 234555555443444322 2222 2458888888999998755 3
Q ss_pred hhhHHH--HHHHHHHHHHhccCcHHHHHHHH
Q 003081 192 QVGKHL--RRIWTAAFRAMDDIKETVRTAGD 220 (850)
Q Consensus 192 ~l~~~L--~~i~~~l~~~ldD~k~~VR~aA~ 220 (850)
++..|| .+|+|.++|.|+-..+-.+..|.
T Consensus 136 eVi~fLL~tEiiplCLrime~GselSKtvAt 166 (268)
T 2fv2_A 136 EVINFLLTTEIIPLCLRIMESGSELSKTVAT 166 (268)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHhhccHHHHHHHH
Confidence 455554 47899999999877666555544
No 148
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=32.94 E-value=1.1e+02 Score=30.27 Aligned_cols=75 Identities=9% Similarity=0.077 Sum_probs=52.9
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhH--HHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHhcc
Q 003081 518 GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYH--HVLLESIMKEVPGR-LWEGKDALLYAIGSISTSCH 592 (850)
Q Consensus 518 ~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l--~~llp~L~~~L~~r-~~~gKe~vL~aL~~l~~~~~ 592 (850)
.+.+..|.+.+.+.+..+.-.|...+..+++..|..|...+ ...+..|.+-+... ...+|+++++.+......++
T Consensus 44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 121 (226)
T 3zyq_A 44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFR 121 (226)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 45677788888999999999999999999999998665321 22333333333222 36789999998888876554
No 149
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=32.56 E-value=5.3e+02 Score=28.27 Aligned_cols=90 Identities=11% Similarity=0.088 Sum_probs=54.6
Q ss_pred HHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccC
Q 003081 181 LADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGI 260 (850)
Q Consensus 181 l~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL 260 (850)
+.++++..+..++.+....++..+-++++..+-.|-+.|...+..- ..+..+.. ....++..+.|.|....-
T Consensus 308 leeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~--~i~~li~~------n~~~IlPii~p~L~~~s~ 379 (449)
T 2npp_B 308 LEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNE--YIMSLISD------NAAKILPIMFPSLYRNSK 379 (449)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCH--HHHHHHHT------THHHHHHHHHHHHTSCTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCH--HHHHHHHh------chhhhHHhhHHHHHHHHH
Confidence 4556667777788888888888888999988888877765433211 01112221 133466667776653211
Q ss_pred CCchhHHHHHHHHHHHHH
Q 003081 261 LSKVDSISKASIGVVMKL 278 (850)
Q Consensus 261 ~s~~~evr~~a~~~L~~l 278 (850)
..=++.||..+..++--+
T Consensus 380 ~HWn~~V~~la~~vlk~l 397 (449)
T 2npp_B 380 THWNKTIHGLIYNALKLF 397 (449)
T ss_dssp CCSSTTHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 222467888777776544
No 150
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=31.01 E-value=2.6e+02 Score=25.28 Aligned_cols=84 Identities=8% Similarity=0.031 Sum_probs=51.8
Q ss_pred hhcChhhHhhHHHHHHHHHhccCCCchHhhHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHH
Q 003081 348 NVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASV 427 (850)
Q Consensus 348 ~~ld~~~l~~lvp~L~~~lk~~~~~~tr~~a~~~l~~L~~~~~~~~~py~~~lL~~Ll~~l~~D~n~~Vr~~~a~alg~L 427 (850)
..++.+.+..++|.|+..+++. .||....++.++ .+++..+.||..+++ . .|..+=+. -.+.++
T Consensus 22 ~~~~~~~i~p~lp~LL~WLQD~-NWPvA~~i~~~L----~~~~~~l~p~I~~vl-------~--s~D~~W~y--wil~~l 85 (134)
T 3ut4_A 22 CKLIDNEIEPIIFDLLKWLQDY-NWPIAKDILPVV----VLHQSIAMPHILTIL-------Q--GNDIMWKY--WVIKLM 85 (134)
T ss_dssp TTCCHHHHHHHHHHHHGGGSCT-TSTTHHHHHHHH----HHTHHHHHHHHHHHH-------H--SSCHHHHH--HHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHhcC-CCccHHHHHHHH----HHccHhhHHHHHHHH-------H--cCChHHHH--HHHHHH
Confidence 3446677888999999999985 899766665555 344555555544433 2 23333222 235666
Q ss_pred hhhCCHHHHHHHHHHHHHhh
Q 003081 428 LKYATPSQAQKLIEETAALH 447 (850)
Q Consensus 428 ~~~~~~~~v~~li~~l~~~~ 447 (850)
+...+.+....+.+.+....
T Consensus 86 v~~~~~~~~~~l~~eL~rl~ 105 (134)
T 3ut4_A 86 IPYLIYPNKQLVKSELERLS 105 (134)
T ss_dssp GGGCCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHH
Confidence 76777776666666666555
No 151
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=30.15 E-value=4.8e+02 Score=26.95 Aligned_cols=139 Identities=9% Similarity=0.070 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHH------HHHHHHHHHhhCCC-ChhHHHHHHHHHHHHHccCCch-hhhHHHHHHHH
Q 003081 131 NVQDAMAHIWKSLVADPKRTIDEHL------DLIFDDLLIQSGSR-LWRSREASCLSLADIIQGRKFD-QVGKHLRRIWT 202 (850)
Q Consensus 131 ~VR~a~~~iw~~Lv~d~~~~i~~~~------~~Il~~Ll~~l~~~-~wRVReaa~~Al~~Ll~~~~~~-~l~~~L~~i~~ 202 (850)
..|--+.++|+.++.++. ...+| ..++..++..+.++ ....|-.++..+++++...... .+..+..+++.
T Consensus 117 ~~~fPvLDLlRl~~l~p~--~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~ 194 (304)
T 3ebb_A 117 DIVFPALDILRLSIKHPS--VNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMS 194 (304)
T ss_dssp TTCHHHHHHHHHHTTSHH--HHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHH
T ss_pred HhHHHHHHHHHHHHcCcc--HHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHH
Confidence 456678899998887763 33333 45666677666532 3556888889999998865433 34566777887
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHH
Q 003081 203 AAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVK 280 (850)
Q Consensus 203 ~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~ 280 (850)
.+...+.+.+..+|.|+..++-.++-...+..+ ......++.. +-.+++ . ..+.|..--++.++|.++.
T Consensus 195 ~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~-----~~~~~~ll~~-l~~il~-~--~~d~EalyR~LvALGtL~~ 263 (304)
T 3ebb_A 195 HAIELKSGSNKNIHIALATLALNYSVCFHKDHN-----IEGKAQCLSL-ISTILE-V--VQDLEATFRLLVALGTLIS 263 (304)
T ss_dssp HHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCC-----HHHHHHHHHH-HHHHHT-T--CCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCC-----chHHHHHHHH-HHHHHh-c--cCCHHHHHHHHHHHHHHHh
Confidence 777777777889999988888777655433211 1112223332 222332 2 2345666667777887763
No 152
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=29.68 E-value=1.1e+02 Score=27.94 Aligned_cols=73 Identities=14% Similarity=0.031 Sum_probs=44.6
Q ss_pred HHhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHh
Q 003081 513 LQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTS 590 (850)
Q Consensus 513 i~~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~ 590 (850)
+..|..+. .+.+.-++..|.. ....+.+||...-..-......|++.|.+.|..+.|..|-+.|..|--++.+
T Consensus 7 ~~~~~~~~--~V~~ATs~d~~~~---pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~ 79 (140)
T 1vdy_A 7 GESYWRSR--MIDAVTSDEDKVA---PVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGK 79 (140)
T ss_dssp CTHHHHHH--HHHHTTCSCSSCC---CHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHH--HHHHHhcCCCCCC---cHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHh
Confidence 34444433 3344545555543 2345666665432211123588999999999999998888888777666643
No 153
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=27.67 E-value=2.2e+02 Score=26.31 Aligned_cols=75 Identities=11% Similarity=0.095 Sum_probs=54.0
Q ss_pred HHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHhCcchhhhH--HHHHHH-HHHhcCCC---ChhhHHHHHHHHHHHHHh
Q 003081 518 GEIVSLICEGIA-SSSWSSKRKSAKAICKLGEILGESLSNYH--HVLLES-IMKEVPGR---LWEGKDALLYAIGSISTS 590 (850)
Q Consensus 518 ~eIl~ll~~~L~-d~s~~vr~~aa~alg~la~~~g~~l~~~l--~~llp~-L~~~L~~r---~~~gKe~vL~aL~~l~~~ 590 (850)
.+.+..+.+.+. +.+..+.-.|...+..+++.+|..|...+ ..++.- |++.+..+ ...+|+++++.+-.....
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 455667777787 47888888999999999999998876532 335554 55555332 246899999888888775
Q ss_pred cc
Q 003081 591 CH 592 (850)
Q Consensus 591 ~~ 592 (850)
++
T Consensus 132 f~ 133 (157)
T 1elk_A 132 FR 133 (157)
T ss_dssp HT
T ss_pred cC
Confidence 54
No 154
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=25.52 E-value=19 Score=24.76 Aligned_cols=19 Identities=42% Similarity=0.660 Sum_probs=16.3
Q ss_pred eeecCChhhHHHHHHHHHH
Q 003081 4 VYELGDASMKQNLVDALVT 22 (850)
Q Consensus 4 vy~~~~~~~~~~lv~~l~~ 22 (850)
+|+-||++.|..+.++.++
T Consensus 15 iY~~gddd~kram~KS~~e 33 (35)
T 2jtt_C 15 IYEDGDDDMKRTINKAWVE 33 (35)
T ss_dssp HHTTCCSSHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHhh
Confidence 6999999999999887654
No 155
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=22.96 E-value=3.8e+02 Score=26.14 Aligned_cols=72 Identities=8% Similarity=-0.004 Sum_probs=52.2
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcchhh------hHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhc
Q 003081 518 GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSN------YHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSC 591 (850)
Q Consensus 518 ~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l~~------~l~~llp~L~~~L~~r~~~gKe~vL~aL~~l~~~~ 591 (850)
.+.+..|.+.+.+.+..+.-.|...|..++...|..|.. +++.+..++.. .....+|+++++.+-.....+
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~---~~~~~Vk~kil~li~~W~~~f 117 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLES---TPHENVRQKMLELVQTWAYAF 117 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHHHHHh
Confidence 456677778888999999999999999999999886643 34444433322 234678999998887777654
Q ss_pred c
Q 003081 592 H 592 (850)
Q Consensus 592 ~ 592 (850)
+
T Consensus 118 ~ 118 (220)
T 1dvp_A 118 R 118 (220)
T ss_dssp T
T ss_pred c
Confidence 4
No 156
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=22.54 E-value=4.3e+02 Score=23.85 Aligned_cols=83 Identities=19% Similarity=0.088 Sum_probs=53.9
Q ss_pred HHHHhHHHHhhccCCCchhHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHhccccchhhhhHHHHhhhhcccchhhh
Q 003081 247 SMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKL 326 (850)
Q Consensus 247 ~l~~lLP~Ll~~gL~s~~~evr~~a~~~L~~la~~~g~~l~P~lp~Lvp~LL~~Ls~~ep~~~nyl~~~a~~~~~~~d~i 326 (850)
-+..++|.|+. -+.+-+|++.......|.. |-..++|.+.+.|.+.+..=
T Consensus 28 ~i~p~lp~LL~-WLQD~NWPvA~~i~~~L~~-----------~~~~l~p~I~~vl~s~D~~W------------------ 77 (134)
T 3ut4_A 28 EIEPIIFDLLK-WLQDYNWPIAKDILPVVVL-----------HQSIAMPHILTILQGNDIMW------------------ 77 (134)
T ss_dssp HHHHHHHHHHG-GGSCTTSTTHHHHHHHHHH-----------THHHHHHHHHHHHHSSCHHH------------------
T ss_pred HHHHHHHHHHH-HHhcCCCccHHHHHHHHHH-----------ccHhhHHHHHHHHHcCChHH------------------
Confidence 45667888883 5778889988777776653 34566777777775432111
Q ss_pred HHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCC
Q 003081 327 ENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIG 371 (850)
Q Consensus 327 d~~r~~~~~~s~l~eal~~~~~~ld~~~l~~lvp~L~~~lk~~~~ 371 (850)
....+..++..+..+....+.|.|.+...++.+
T Consensus 78 ------------~ywil~~lv~~~~~~~~~~l~~eL~rl~~~pt~ 110 (134)
T 3ut4_A 78 ------------KYWVIKLMIPYLIYPNKQLVKSELERLSSLEII 110 (134)
T ss_dssp ------------HHHHHHHHGGGCCHHHHHHHHHHHHHHHTCCCS
T ss_pred ------------HHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCc
Confidence 123445556677777778888888888876533
No 157
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=21.15 E-value=8e+02 Score=26.44 Aligned_cols=97 Identities=10% Similarity=0.064 Sum_probs=61.9
Q ss_pred HHHHHccCCchhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhhhcccCcchhHHhHHHHhHHHHhhccC
Q 003081 181 LADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGI 260 (850)
Q Consensus 181 l~~Ll~~~~~~~l~~~L~~i~~~l~~~ldD~k~~VR~aA~~~~~~L~~~~~r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL 260 (850)
+.++++..++.++.+....++..+-++++..+-.|-+.|...+..- ..+..... ....+++.+.|.|....-
T Consensus 275 le~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe--~i~~li~~------n~~~IlPii~p~L~~~~~ 346 (403)
T 3fga_B 275 LEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNE--YIMSLISD------NAAKILPIMFPSLYRNSK 346 (403)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCH--HHHHHHHT------THHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccH--HHHHHHHH------hHHHHHHHHHHHHHHHHH
Confidence 4566777777888888888999999999999888877765443211 11122221 134577777787764222
Q ss_pred CCchhHHHHHHHHHHHHHHHhcCcc
Q 003081 261 LSKVDSISKASIGVVMKLVKGAGIA 285 (850)
Q Consensus 261 ~s~~~evr~~a~~~L~~la~~~g~~ 285 (850)
..=++.||+.+..++--+.+.....
T Consensus 347 ~HWn~~v~~l~~~vlk~l~e~d~~l 371 (403)
T 3fga_B 347 THWNKTIHGLIYNALKLFMEMNQKL 371 (403)
T ss_dssp CCSCHHHHHHHHHHHHHHHTTSCCC
T ss_pred HccCHHHHHHHHHHHHHHHHhCHHH
Confidence 2235788888888776665444443
No 158
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=21.00 E-value=3e+02 Score=25.02 Aligned_cols=73 Identities=8% Similarity=0.015 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCcch----hhhHHHHHHHHHH---hcCCCChhhHHHHHHHHHHH
Q 003081 515 LYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESL----SNYHHVLLESIMK---EVPGRLWEGKDALLYAIGSI 587 (850)
Q Consensus 515 ~yl~eIl~ll~~~L~d~s~~vr~~aa~alg~la~~~g~~l----~~~l~~llp~L~~---~L~~r~~~gKe~vL~aL~~l 587 (850)
.|.+.|++.+.+.+.....+-|-.+.+.+.+++...+... .+|.+.+.+.|.+ ..-....+.|.++..-+...
T Consensus 38 ~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~~~~~~~~~~r~kl~rLl~iW 117 (145)
T 3d9j_A 38 KFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLW 117 (145)
T ss_dssp GGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHHTSSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 4567777777777665566778888899999998776521 1333333333333 22122367777777655433
Done!