Query 003082
Match_columns 850
No_of_seqs 710 out of 4152
Neff 10.1
Searched_HMMs 46136
Date Thu Mar 28 16:40:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003082.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003082hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.1E-70 2.3E-75 646.0 69.7 613 71-845 370-1023(1060)
2 PLN03077 Protein ECB2; Provisi 100.0 9.1E-66 2E-70 618.5 62.4 616 70-743 50-725 (857)
3 PLN03218 maturation of RBCL 1; 100.0 1.6E-64 3.5E-69 593.9 65.7 521 155-745 370-916 (1060)
4 PLN03077 Protein ECB2; Provisi 100.0 3.3E-60 7.1E-65 570.4 61.8 602 71-744 121-729 (857)
5 PLN03081 pentatricopeptide (PP 100.0 7.6E-58 1.7E-62 536.9 52.4 449 118-675 92-548 (697)
6 PLN03081 pentatricopeptide (PP 100.0 1.1E-54 2.4E-59 510.1 49.4 460 161-740 93-559 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.5E-26 5.5E-31 282.7 67.0 548 62-668 321-883 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 4.8E-26 1E-30 280.2 64.0 530 62-648 355-898 (899)
9 PRK11447 cellulose synthase su 99.9 1.3E-18 2.8E-23 215.2 65.9 554 61-654 53-745 (1157)
10 PRK11447 cellulose synthase su 99.9 1.1E-17 2.5E-22 206.8 57.7 481 62-616 173-745 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 4.2E-19 9.1E-24 184.6 33.4 369 60-462 106-485 (966)
12 PRK11788 tetratricopeptide rep 99.8 2.8E-18 6E-23 189.1 33.8 310 224-657 38-354 (389)
13 KOG4626 O-linked N-acetylgluco 99.8 3.1E-17 6.8E-22 170.8 37.0 437 73-627 50-499 (966)
14 PRK09782 bacteriophage N4 rece 99.8 1.8E-15 3.9E-20 178.7 56.9 495 62-650 70-706 (987)
15 PRK11788 tetratricopeptide rep 99.8 2.1E-17 4.5E-22 182.2 36.0 282 294-668 40-327 (389)
16 TIGR00990 3a0801s09 mitochondr 99.8 1.1E-15 2.4E-20 177.5 50.2 435 71-611 127-570 (615)
17 TIGR00990 3a0801s09 mitochondr 99.8 8.4E-15 1.8E-19 170.2 49.3 416 122-649 136-570 (615)
18 PRK15174 Vi polysaccharide exp 99.8 1.6E-15 3.5E-20 175.5 42.0 329 71-427 42-381 (656)
19 PRK09782 bacteriophage N4 rece 99.8 2.2E-13 4.7E-18 161.2 58.5 519 72-650 45-672 (987)
20 PRK15174 Vi polysaccharide exp 99.8 7.1E-15 1.5E-19 170.2 44.7 289 162-460 49-345 (656)
21 KOG2002 TPR-containing nuclear 99.8 7.6E-14 1.6E-18 154.0 47.9 539 62-640 156-738 (1018)
22 KOG4422 Uncharacterized conser 99.8 7.5E-14 1.6E-18 140.0 41.9 440 123-614 125-592 (625)
23 PRK10049 pgaA outer membrane p 99.7 1.5E-13 3.4E-18 162.6 47.7 400 120-623 22-465 (765)
24 PRK10049 pgaA outer membrane p 99.7 5E-14 1.1E-18 166.7 43.5 366 71-461 15-421 (765)
25 PRK14574 hmsH outer membrane p 99.7 7.4E-13 1.6E-17 153.5 47.6 473 64-620 28-519 (822)
26 PRK14574 hmsH outer membrane p 99.7 7.1E-12 1.5E-16 145.5 52.2 422 164-641 43-507 (822)
27 KOG2002 TPR-containing nuclear 99.7 1.3E-11 2.7E-16 136.8 50.7 565 62-653 190-801 (1018)
28 KOG2003 TPR repeat-containing 99.7 4.8E-13 1E-17 134.8 34.3 458 146-666 192-704 (840)
29 KOG2076 RNA polymerase III tra 99.6 1.3E-10 2.9E-15 128.0 50.9 515 71-633 139-720 (895)
30 KOG4422 Uncharacterized conser 99.6 6.8E-11 1.5E-15 119.1 42.4 414 165-652 125-592 (625)
31 KOG2076 RNA polymerase III tra 99.5 1.5E-09 3.3E-14 119.9 44.3 295 164-462 148-478 (895)
32 TIGR00540 hemY_coli hemY prote 99.4 8.4E-10 1.8E-14 121.3 34.2 284 167-460 96-397 (409)
33 KOG0495 HAT repeat protein [RN 99.4 1.7E-07 3.7E-12 100.0 48.9 484 59-636 369-869 (913)
34 PRK10747 putative protoheme IX 99.4 2.4E-09 5.2E-14 117.1 34.5 277 168-460 97-388 (398)
35 KOG2003 TPR repeat-containing 99.3 4.3E-09 9.4E-14 106.7 32.4 421 70-575 275-720 (840)
36 KOG1840 Kinesin light chain [C 99.3 8.8E-11 1.9E-15 127.3 21.4 261 65-355 194-481 (508)
37 KOG0495 HAT repeat protein [RN 99.3 2.4E-07 5.2E-12 98.9 45.5 469 59-611 399-879 (913)
38 PF13041 PPR_2: PPR repeat fam 99.3 3.3E-12 7.1E-17 93.3 6.8 50 581-630 1-50 (50)
39 PF13429 TPR_15: Tetratricopep 99.3 1.3E-11 2.7E-16 128.9 13.2 225 224-460 47-275 (280)
40 PRK10747 putative protoheme IX 99.3 8.5E-09 1.9E-13 112.7 34.9 62 547-610 327-388 (398)
41 KOG0547 Translocase of outer m 99.3 1.2E-08 2.5E-13 105.3 32.2 356 71-461 115-490 (606)
42 TIGR00540 hemY_coli hemY prote 99.3 4.1E-09 8.9E-14 115.9 31.5 285 124-426 95-398 (409)
43 PF13041 PPR_2: PPR repeat fam 99.3 8.2E-12 1.8E-16 91.2 6.4 50 546-595 1-50 (50)
44 PF13429 TPR_15: Tetratricopep 99.3 4.4E-11 9.6E-16 124.8 13.7 225 226-458 13-239 (280)
45 KOG1126 DNA-binding cell divis 99.3 2.2E-09 4.8E-14 115.2 26.0 255 158-426 356-619 (638)
46 KOG1915 Cell cycle control pro 99.3 1.5E-06 3.3E-11 89.5 44.8 417 166-649 84-535 (677)
47 KOG4318 Bicoid mRNA stability 99.2 3.5E-10 7.6E-15 123.9 19.6 254 310-635 11-288 (1088)
48 KOG1156 N-terminal acetyltrans 99.2 7E-07 1.5E-11 95.8 43.2 427 125-614 19-470 (700)
49 KOG1126 DNA-binding cell divis 99.2 2.2E-09 4.8E-14 115.1 24.4 299 71-398 317-626 (638)
50 KOG1155 Anaphase-promoting com 99.2 6.7E-07 1.5E-11 92.0 40.2 323 222-611 165-494 (559)
51 KOG4318 Bicoid mRNA stability 99.2 6.3E-08 1.4E-12 106.7 34.6 544 56-652 12-596 (1088)
52 KOG2047 mRNA splicing factor [ 99.2 7E-06 1.5E-10 87.9 48.5 496 71-639 102-679 (835)
53 COG2956 Predicted N-acetylgluc 99.2 4.3E-08 9.3E-13 96.2 29.7 284 168-465 48-350 (389)
54 KOG0547 Translocase of outer m 99.2 7.5E-08 1.6E-12 99.4 32.9 305 123-461 125-456 (606)
55 KOG1840 Kinesin light chain [C 99.2 8.3E-09 1.8E-13 112.1 27.4 261 115-425 201-477 (508)
56 KOG1155 Anaphase-promoting com 99.2 9.9E-06 2.1E-10 83.7 47.1 282 163-461 172-460 (559)
57 PRK12370 invasion protein regu 99.2 5.5E-09 1.2E-13 119.4 26.2 219 85-317 275-501 (553)
58 TIGR02521 type_IV_pilW type IV 99.1 9E-09 2E-13 104.1 23.4 197 70-283 30-230 (234)
59 PRK12370 invasion protein regu 99.1 6.5E-09 1.4E-13 118.8 23.3 236 61-319 286-536 (553)
60 COG3071 HemY Uncharacterized e 99.1 2.1E-07 4.6E-12 94.4 30.0 278 85-390 98-388 (400)
61 COG3071 HemY Uncharacterized e 99.1 3.6E-06 7.8E-11 85.7 38.3 287 293-641 88-384 (400)
62 KOG2376 Signal recognition par 99.1 6.5E-06 1.4E-10 87.6 40.9 445 157-674 14-510 (652)
63 TIGR02521 type_IV_pilW type IV 99.1 1.3E-07 2.9E-12 95.5 27.2 199 222-460 32-230 (234)
64 COG2956 Predicted N-acetylgluc 99.0 2.4E-07 5.3E-12 91.0 26.8 221 160-392 112-347 (389)
65 COG3063 PilF Tfp pilus assembl 99.0 8.5E-08 1.8E-12 90.1 22.6 201 67-284 31-235 (250)
66 KOG1156 N-terminal acetyltrans 99.0 2E-05 4.3E-10 85.0 41.9 102 545-652 366-470 (700)
67 KOG3785 Uncharacterized conser 99.0 4.7E-06 1E-10 82.8 34.3 159 125-299 34-192 (557)
68 KOG3785 Uncharacterized conser 99.0 2.7E-06 5.9E-11 84.4 32.4 188 78-291 29-218 (557)
69 KOG1173 Anaphase-promoting com 99.0 2.8E-05 6.1E-10 82.6 40.7 469 120-666 23-532 (611)
70 KOG1915 Cell cycle control pro 98.9 0.00011 2.3E-09 76.4 48.5 418 125-612 85-536 (677)
71 KOG1173 Anaphase-promoting com 98.9 1.5E-06 3.3E-11 91.8 29.4 282 155-444 244-533 (611)
72 KOG2376 Signal recognition par 98.9 1.5E-05 3.2E-10 84.9 36.5 188 77-286 18-254 (652)
73 cd05804 StaR_like StaR_like; a 98.9 4.6E-06 9.9E-11 90.6 32.5 206 66-285 2-215 (355)
74 KOG3617 WD40 and TPR repeat-co 98.9 5.9E-05 1.3E-09 83.0 38.5 499 76-657 805-1366(1416)
75 KOG1174 Anaphase-promoting com 98.8 0.00017 3.8E-09 73.6 38.8 287 232-611 207-499 (564)
76 PRK11189 lipoprotein NlpI; Pro 98.8 1.3E-06 2.9E-11 91.3 25.0 117 126-249 39-160 (296)
77 COG3063 PilF Tfp pilus assembl 98.8 1.6E-06 3.5E-11 81.7 22.3 196 153-352 33-235 (250)
78 PF12569 NARP1: NMDA receptor- 98.8 1.5E-05 3.1E-10 88.3 33.5 58 401-460 197-255 (517)
79 PF12569 NARP1: NMDA receptor- 98.8 6.2E-06 1.3E-10 91.2 30.0 292 157-462 6-334 (517)
80 KOG1129 TPR repeat-containing 98.8 2.3E-06 5E-11 84.1 22.5 221 118-351 228-456 (478)
81 PRK11189 lipoprotein NlpI; Pro 98.8 3.6E-06 7.7E-11 88.1 25.9 117 168-285 39-161 (296)
82 KOG4162 Predicted calmodulin-b 98.8 0.00033 7.3E-09 77.3 41.0 491 125-642 239-778 (799)
83 KOG0624 dsRNA-activated protei 98.7 4.5E-05 9.8E-10 75.8 29.7 296 71-393 38-371 (504)
84 KOG1129 TPR repeat-containing 98.7 5E-07 1.1E-11 88.7 16.2 224 75-318 227-458 (478)
85 PF12854 PPR_1: PPR repeat 98.7 1.6E-08 3.6E-13 66.1 4.2 32 578-609 2-33 (34)
86 PRK04841 transcriptional regul 98.7 7.7E-05 1.7E-09 92.0 38.5 233 227-459 458-717 (903)
87 KOG4340 Uncharacterized conser 98.7 6.5E-05 1.4E-09 73.2 28.7 347 74-458 13-371 (459)
88 PF12854 PPR_1: PPR repeat 98.7 2.8E-08 6.1E-13 65.0 3.8 34 542-575 1-34 (34)
89 KOG4162 Predicted calmodulin-b 98.6 0.00032 6.8E-09 77.5 36.5 369 71-461 323-782 (799)
90 KOG1127 TPR repeat-containing 98.6 0.00035 7.5E-09 79.1 37.1 208 380-641 800-1030(1238)
91 KOG1125 TPR repeat-containing 98.6 3.5E-06 7.6E-11 89.6 20.8 247 77-380 291-559 (579)
92 KOG1174 Anaphase-promoting com 98.6 3.4E-05 7.3E-10 78.6 25.3 259 115-393 234-501 (564)
93 KOG2047 mRNA splicing factor [ 98.5 0.003 6.6E-08 68.4 53.4 489 57-657 14-585 (835)
94 KOG3617 WD40 and TPR repeat-co 98.5 0.0028 6E-08 70.4 39.0 247 168-460 813-1107(1416)
95 cd05804 StaR_like StaR_like; a 98.5 0.00044 9.5E-09 75.0 34.1 198 221-427 6-215 (355)
96 PRK04841 transcriptional regul 98.5 0.00059 1.3E-08 84.2 38.6 372 198-612 348-760 (903)
97 TIGR03302 OM_YfiO outer membra 98.4 2.4E-05 5.2E-10 79.3 20.6 190 71-285 33-232 (235)
98 KOG0985 Vesicle coat protein c 98.4 0.0081 1.8E-07 68.3 40.9 500 74-676 609-1187(1666)
99 PF04733 Coatomer_E: Coatomer 98.4 4E-05 8.6E-10 79.1 20.9 146 302-461 115-264 (290)
100 KOG2053 Mitochondrial inherita 98.4 0.01 2.2E-07 67.1 46.9 220 81-319 19-256 (932)
101 KOG3616 Selective LIM binding 98.4 0.0043 9.3E-08 67.9 35.1 220 198-457 713-932 (1636)
102 KOG3616 Selective LIM binding 98.3 0.0083 1.8E-07 65.8 36.7 191 166-388 743-933 (1636)
103 KOG0624 dsRNA-activated protei 98.3 0.00053 1.1E-08 68.4 25.6 299 123-463 48-371 (504)
104 KOG1125 TPR repeat-containing 98.3 4.4E-05 9.5E-10 81.5 18.7 253 194-457 288-566 (579)
105 KOG0985 Vesicle coat protein c 98.3 0.0035 7.5E-08 71.2 33.7 245 167-459 1060-1305(1666)
106 PRK15179 Vi polysaccharide bio 98.3 3.9E-05 8.5E-10 88.3 19.1 119 125-284 98-216 (694)
107 PRK10370 formate-dependent nit 98.3 6.9E-05 1.5E-09 72.9 17.9 147 118-286 21-174 (198)
108 KOG0548 Molecular co-chaperone 98.2 0.0045 9.8E-08 66.0 31.9 99 123-231 12-114 (539)
109 PLN02789 farnesyltranstransfer 98.2 0.00032 7E-09 73.3 23.3 179 71-268 37-229 (320)
110 PF04733 Coatomer_E: Coatomer 98.2 4.4E-05 9.6E-10 78.7 16.5 150 229-392 110-265 (290)
111 PLN02789 farnesyltranstransfer 98.2 0.00037 8E-09 72.9 23.5 199 125-336 49-267 (320)
112 KOG4340 Uncharacterized conser 98.2 0.00035 7.6E-09 68.3 20.5 306 124-459 21-336 (459)
113 KOG1128 Uncharacterized conser 98.2 0.0006 1.3E-08 75.0 23.8 212 226-463 403-617 (777)
114 PRK15179 Vi polysaccharide bio 98.1 0.0003 6.5E-09 81.2 22.9 142 155-331 86-229 (694)
115 KOG0548 Molecular co-chaperone 98.1 0.011 2.4E-07 63.2 31.1 379 166-632 13-433 (539)
116 KOG3060 Uncharacterized conser 98.1 0.0008 1.7E-08 64.7 20.0 188 84-285 25-220 (289)
117 PRK10370 formate-dependent nit 98.1 0.00015 3.2E-09 70.6 15.7 151 77-257 22-179 (198)
118 PRK14720 transcript cleavage f 98.1 0.00098 2.1E-08 77.7 24.6 211 155-374 31-268 (906)
119 COG5010 TadD Flp pilus assembl 98.1 0.00081 1.7E-08 65.3 20.1 167 217-425 63-229 (257)
120 PRK15359 type III secretion sy 98.0 9.6E-05 2.1E-09 67.9 13.3 88 123-250 34-121 (144)
121 TIGR00756 PPR pentatricopeptid 98.0 6.7E-06 1.5E-10 54.6 4.2 33 585-617 2-34 (35)
122 PRK14720 transcript cleavage f 98.0 0.0035 7.6E-08 73.2 28.2 235 255-594 30-268 (906)
123 KOG3081 Vesicle coat complex C 98.0 0.0018 3.8E-08 62.9 21.3 243 168-426 21-270 (299)
124 KOG2053 Mitochondrial inherita 98.0 0.055 1.2E-06 61.5 43.0 441 167-648 21-537 (932)
125 PRK15359 type III secretion sy 98.0 0.00011 2.4E-09 67.5 12.8 117 133-295 13-129 (144)
126 PF08579 RPM2: Mitochondrial r 98.0 0.00017 3.8E-09 60.2 12.0 84 587-670 29-118 (120)
127 KOG1070 rRNA processing protei 98.0 0.00065 1.4E-08 79.6 20.7 214 60-289 1448-1667(1710)
128 TIGR03302 OM_YfiO outer membra 98.0 0.0008 1.7E-08 68.1 19.8 191 222-461 34-231 (235)
129 KOG1127 TPR repeat-containing 98.0 0.071 1.5E-06 61.3 37.5 178 127-317 472-658 (1238)
130 PF13812 PPR_3: Pentatricopept 97.9 1.2E-05 2.7E-10 52.9 4.1 32 585-616 3-34 (34)
131 TIGR00756 PPR pentatricopeptid 97.9 1.8E-05 3.9E-10 52.5 4.5 33 365-397 2-34 (35)
132 COG5010 TadD Flp pilus assembl 97.9 0.00071 1.5E-08 65.7 16.6 119 164-285 75-197 (257)
133 KOG1914 mRNA cleavage and poly 97.9 0.056 1.2E-06 58.0 42.3 126 518-649 369-500 (656)
134 COG4783 Putative Zn-dependent 97.9 0.00046 9.9E-09 72.7 16.2 140 79-249 314-453 (484)
135 TIGR02552 LcrH_SycD type III s 97.9 0.00018 3.9E-09 65.6 11.8 116 135-293 5-120 (135)
136 KOG1070 rRNA processing protei 97.9 0.0084 1.8E-07 70.8 27.2 225 214-450 1451-1688(1710)
137 KOG1128 Uncharacterized conser 97.9 0.0011 2.3E-08 73.1 19.0 229 195-442 402-632 (777)
138 PF13812 PPR_3: Pentatricopept 97.8 2.4E-05 5.2E-10 51.5 4.2 33 549-581 2-34 (34)
139 COG4783 Putative Zn-dependent 97.8 0.00087 1.9E-08 70.7 17.1 136 164-318 315-454 (484)
140 TIGR02552 LcrH_SycD type III s 97.7 0.00042 9.2E-09 63.1 11.9 112 218-332 14-126 (135)
141 PRK15363 pathogenicity island 97.7 0.0003 6.4E-09 63.6 9.8 94 155-250 35-132 (157)
142 PF01535 PPR: PPR repeat; Int 97.7 4.1E-05 9E-10 49.1 3.1 29 585-613 2-30 (31)
143 PF14938 SNAP: Soluble NSF att 97.7 0.0023 4.9E-08 66.5 17.6 179 66-285 30-225 (282)
144 PF08579 RPM2: Mitochondrial r 97.6 0.00069 1.5E-08 56.7 10.3 80 551-630 28-116 (120)
145 PF06239 ECSIT: Evolutionarily 97.6 0.0005 1.1E-08 65.0 10.8 88 546-633 45-153 (228)
146 PF01535 PPR: PPR repeat; Int 97.6 7.6E-05 1.6E-09 47.8 3.3 31 549-579 1-31 (31)
147 PF09976 TPR_21: Tetratricopep 97.6 0.0018 3.9E-08 59.7 13.6 56 125-185 23-78 (145)
148 smart00463 SMR Small MutS-rela 97.5 8.7E-05 1.9E-09 60.2 4.0 60 712-779 2-61 (80)
149 KOG3081 Vesicle coat complex C 97.5 0.062 1.3E-06 52.5 23.0 83 562-648 187-269 (299)
150 PF10037 MRP-S27: Mitochondria 97.5 0.0012 2.5E-08 70.9 12.8 120 512-631 63-186 (429)
151 PF10037 MRP-S27: Mitochondria 97.5 0.0017 3.6E-08 69.7 13.7 127 318-446 60-186 (429)
152 KOG3060 Uncharacterized conser 97.5 0.021 4.5E-07 55.3 19.2 184 125-319 24-221 (289)
153 KOG1914 mRNA cleavage and poly 97.4 0.29 6.3E-06 52.7 41.0 137 531-673 349-490 (656)
154 PF09295 ChAPs: ChAPs (Chs5p-A 97.4 0.0028 6.2E-08 67.7 14.0 126 72-218 170-295 (395)
155 PF14938 SNAP: Soluble NSF att 97.4 0.013 2.8E-07 60.9 18.5 200 122-350 44-263 (282)
156 PF09295 ChAPs: ChAPs (Chs5p-A 97.4 0.0067 1.5E-07 64.9 16.5 120 226-389 174-294 (395)
157 PRK10866 outer membrane biogen 97.3 0.03 6.4E-07 56.4 19.7 188 71-283 32-239 (243)
158 PF06239 ECSIT: Evolutionarily 97.2 0.0062 1.3E-07 57.8 12.2 90 510-599 42-154 (228)
159 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.0055 1.2E-07 54.1 11.6 100 157-285 4-105 (119)
160 PF12688 TPR_5: Tetratrico pep 97.2 0.011 2.4E-07 51.7 12.8 58 122-184 10-67 (120)
161 PLN03088 SGT1, suppressor of 97.1 0.0035 7.5E-08 67.3 11.8 91 162-285 9-99 (356)
162 PF07079 DUF1347: Protein of u 97.1 0.47 1E-05 50.1 44.4 456 79-624 14-531 (549)
163 PF09976 TPR_21: Tetratricopep 97.1 0.021 4.6E-07 52.6 15.4 126 325-458 13-143 (145)
164 PRK15363 pathogenicity island 97.1 0.0036 7.9E-08 56.7 9.8 97 188-285 32-132 (157)
165 KOG0553 TPR repeat-containing 97.0 0.0056 1.2E-07 60.8 10.6 93 155-249 81-177 (304)
166 PF01713 Smr: Smr domain; Int 97.0 0.0011 2.3E-08 54.2 4.9 55 714-779 1-55 (83)
167 KOG0553 TPR repeat-containing 97.0 0.0044 9.6E-08 61.5 9.4 103 123-235 91-197 (304)
168 PF07079 DUF1347: Protein of u 97.0 0.7 1.5E-05 48.9 38.2 89 564-662 437-531 (549)
169 PLN03088 SGT1, suppressor of 96.9 0.0076 1.6E-07 64.7 11.8 88 123-250 12-99 (356)
170 cd00189 TPR Tetratricopeptide 96.9 0.018 3.9E-07 47.7 11.8 89 369-459 6-94 (100)
171 PF05843 Suf: Suppressor of fo 96.9 0.019 4.1E-07 59.4 14.0 129 257-391 2-135 (280)
172 TIGR02795 tol_pal_ybgF tol-pal 96.9 0.042 9E-07 48.3 14.4 101 326-428 4-106 (119)
173 cd00189 TPR Tetratricopeptide 96.9 0.018 3.9E-07 47.7 11.6 95 327-427 3-97 (100)
174 PF12895 Apc3: Anaphase-promot 96.7 0.0042 9.1E-08 51.0 6.0 80 376-457 2-82 (84)
175 PF05843 Suf: Suppressor of fo 96.7 0.031 6.7E-07 57.8 13.5 130 529-666 17-150 (280)
176 PF13525 YfiO: Outer membrane 96.6 0.081 1.8E-06 51.8 15.7 180 71-276 5-198 (203)
177 COG4235 Cytochrome c biogenesi 96.6 0.027 5.9E-07 56.4 12.2 113 59-185 145-257 (287)
178 PRK02603 photosystem I assembl 96.6 0.033 7.1E-07 53.0 12.6 99 156-285 36-149 (172)
179 PRK15331 chaperone protein Sic 96.6 0.024 5.1E-07 51.8 10.6 93 155-249 37-133 (165)
180 KOG2041 WD40 repeat protein [G 96.6 0.6 1.3E-05 51.7 22.6 110 154-282 795-904 (1189)
181 PF08631 SPO22: Meiosis protei 96.6 0.83 1.8E-05 47.2 23.6 176 124-324 4-192 (278)
182 PF13424 TPR_12: Tetratricopep 96.6 0.0085 1.8E-07 48.3 7.1 70 71-141 5-74 (78)
183 KOG0550 Molecular chaperone (D 96.6 0.33 7.2E-06 50.6 19.6 215 62-283 75-314 (486)
184 KOG0550 Molecular chaperone (D 96.5 0.24 5.2E-06 51.6 18.4 269 125-427 61-350 (486)
185 KOG2796 Uncharacterized conser 96.5 0.7 1.5E-05 45.2 20.2 142 257-405 178-326 (366)
186 KOG1130 Predicted G-alpha GTPa 96.5 0.091 2E-06 54.3 15.1 288 123-426 27-343 (639)
187 PF13432 TPR_16: Tetratricopep 96.4 0.016 3.5E-07 44.7 7.4 59 226-285 2-60 (65)
188 COG4700 Uncharacterized protei 96.4 0.54 1.2E-05 43.5 17.7 122 122-282 98-219 (251)
189 PRK10866 outer membrane biogen 96.4 0.9 2E-05 45.8 21.7 61 224-285 35-98 (243)
190 PF14559 TPR_19: Tetratricopep 96.4 0.013 2.7E-07 45.7 6.7 64 232-298 2-65 (68)
191 PF12895 Apc3: Anaphase-promot 96.4 0.011 2.3E-07 48.5 6.4 82 337-423 2-83 (84)
192 PRK10153 DNA-binding transcrip 96.3 0.21 4.6E-06 56.2 18.5 66 322-393 418-483 (517)
193 CHL00033 ycf3 photosystem I as 96.3 0.089 1.9E-06 49.8 13.5 64 222-285 36-101 (168)
194 PF03704 BTAD: Bacterial trans 96.3 0.066 1.4E-06 49.3 12.3 124 155-293 6-138 (146)
195 PRK02603 photosystem I assembl 96.3 0.16 3.4E-06 48.3 15.2 87 323-413 34-121 (172)
196 PF13432 TPR_16: Tetratricopep 96.3 0.018 3.9E-07 44.4 7.2 56 122-185 6-61 (65)
197 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.13 2.8E-06 55.1 15.4 72 65-142 70-141 (453)
198 KOG1585 Protein required for f 96.3 0.35 7.6E-06 46.8 16.6 207 70-311 30-249 (308)
199 PRK10803 tol-pal system protei 96.2 0.057 1.2E-06 54.8 12.2 105 71-185 143-247 (263)
200 PF12688 TPR_5: Tetratrico pep 96.2 0.2 4.2E-06 43.9 13.8 91 224-316 4-102 (120)
201 PRK10803 tol-pal system protei 96.2 0.041 8.9E-07 55.9 10.8 82 166-249 154-245 (263)
202 PF13424 TPR_12: Tetratricopep 96.0 0.024 5.2E-07 45.6 6.7 70 113-183 5-74 (78)
203 PF04840 Vps16_C: Vps16, C-ter 96.0 2.6 5.5E-05 44.3 31.8 98 163-280 8-105 (319)
204 PRK10153 DNA-binding transcrip 96.0 0.15 3.3E-06 57.3 15.1 130 151-285 336-482 (517)
205 CHL00033 ycf3 photosystem I as 95.9 0.21 4.5E-06 47.3 14.0 98 324-424 35-139 (168)
206 KOG3941 Intermediate in Toll s 95.9 0.072 1.6E-06 52.3 10.4 104 512-634 64-174 (406)
207 COG4235 Cytochrome c biogenesi 95.9 0.18 3.9E-06 50.8 13.5 108 175-285 142-256 (287)
208 PF14559 TPR_19: Tetratricopep 95.9 0.033 7.1E-07 43.3 6.8 52 375-427 3-54 (68)
209 KOG0543 FKBP-type peptidyl-pro 95.8 0.15 3.2E-06 53.3 13.0 61 222-284 292-354 (397)
210 PF13414 TPR_11: TPR repeat; P 95.8 0.035 7.5E-07 43.3 6.8 62 222-284 4-66 (69)
211 PF03704 BTAD: Bacterial trans 95.7 0.28 6E-06 45.1 13.4 71 365-436 64-139 (146)
212 PF12921 ATP13: Mitochondrial 95.5 0.3 6.4E-06 43.3 12.1 87 547-633 1-103 (126)
213 KOG1130 Predicted G-alpha GTPa 95.5 0.31 6.8E-06 50.5 13.5 286 162-462 24-344 (639)
214 PF13525 YfiO: Outer membrane 95.5 1.5 3.3E-05 42.8 18.4 65 158-251 8-72 (203)
215 KOG2280 Vacuolar assembly/sort 95.5 6.1 0.00013 44.8 25.4 126 309-457 668-794 (829)
216 PF08631 SPO22: Meiosis protei 95.4 3.9 8.4E-05 42.3 24.3 174 82-291 4-192 (278)
217 PRK15331 chaperone protein Sic 95.3 0.39 8.5E-06 44.0 12.3 86 122-217 46-131 (165)
218 KOG2114 Vacuolar assembly/sort 95.3 7.4 0.00016 44.8 27.6 178 75-283 338-517 (933)
219 COG5107 RNA14 Pre-mRNA 3'-end 95.3 5 0.00011 42.7 35.1 93 57-164 29-121 (660)
220 PF13414 TPR_11: TPR repeat; P 95.2 0.089 1.9E-06 41.0 7.2 64 547-611 2-66 (69)
221 PF13371 TPR_9: Tetratricopept 95.1 0.13 2.7E-06 40.6 7.9 57 228-285 2-58 (73)
222 COG4700 Uncharacterized protei 95.1 2.8 6.1E-05 39.0 17.1 133 320-458 85-218 (251)
223 PF04840 Vps16_C: Vps16, C-ter 95.0 5.4 0.00012 41.9 31.4 110 325-458 178-287 (319)
224 PF13170 DUF4003: Protein of u 94.9 3.6 7.8E-05 42.6 19.6 146 515-662 60-223 (297)
225 KOG1538 Uncharacterized conser 94.9 5.2 0.00011 44.4 20.9 98 325-461 748-845 (1081)
226 PLN03098 LPA1 LOW PSII ACCUMUL 94.8 0.46 1E-05 51.0 13.1 66 218-285 72-141 (453)
227 KOG3941 Intermediate in Toll s 94.7 0.55 1.2E-05 46.4 12.0 80 503-599 95-174 (406)
228 PF12921 ATP13: Mitochondrial 94.6 0.55 1.2E-05 41.6 11.2 82 582-666 1-98 (126)
229 PF13371 TPR_9: Tetratricopept 94.6 0.13 2.8E-06 40.6 6.7 56 122-185 4-59 (73)
230 COG4649 Uncharacterized protei 94.4 1 2.3E-05 41.2 12.2 122 164-285 67-196 (221)
231 KOG1538 Uncharacterized conser 94.3 1.7 3.8E-05 47.9 15.9 44 85-138 614-657 (1081)
232 COG1729 Uncharacterized protei 94.1 0.4 8.8E-06 47.7 10.1 98 159-285 145-244 (262)
233 PF10300 DUF3808: Protein of u 94.0 2.6 5.7E-05 47.1 17.6 124 120-250 195-334 (468)
234 PF13512 TPR_18: Tetratricopep 93.9 0.91 2E-05 40.7 10.9 83 158-269 13-95 (142)
235 KOG2796 Uncharacterized conser 93.8 7.5 0.00016 38.4 18.6 141 293-440 179-326 (366)
236 PF13512 TPR_18: Tetratricopep 93.8 1.3 2.9E-05 39.7 11.7 72 71-149 10-81 (142)
237 PF13170 DUF4003: Protein of u 93.8 3.5 7.7E-05 42.7 16.8 133 414-590 78-224 (297)
238 COG1729 Uncharacterized protei 93.4 0.82 1.8E-05 45.5 10.9 102 73-185 144-245 (262)
239 KOG1585 Protein required for f 93.4 2.7 5.8E-05 41.0 13.7 201 116-346 34-249 (308)
240 KOG4555 TPR repeat-containing 93.2 1.8 3.8E-05 37.7 10.9 87 200-286 52-145 (175)
241 PF04053 Coatomer_WDAD: Coatom 93.1 2.3 4.9E-05 46.9 14.9 157 80-281 270-427 (443)
242 COG4785 NlpI Lipoprotein NlpI, 93.1 3.4 7.3E-05 39.5 13.6 81 217-298 95-176 (297)
243 PF10300 DUF3808: Protein of u 93.0 2.2 4.7E-05 47.7 14.9 168 73-249 190-375 (468)
244 KOG1941 Acetylcholine receptor 92.9 3.1 6.6E-05 42.9 13.9 116 167-282 134-272 (518)
245 COG4649 Uncharacterized protei 92.6 8.5 0.00018 35.5 14.9 126 123-254 68-200 (221)
246 PF13281 DUF4071: Domain of un 92.6 17 0.00036 38.9 21.5 77 222-298 142-224 (374)
247 KOG1941 Acetylcholine receptor 92.5 9 0.0002 39.7 16.6 160 78-244 13-185 (518)
248 COG4105 ComL DNA uptake lipopr 92.4 12 0.00027 37.1 20.8 187 71-285 35-233 (254)
249 COG3118 Thioredoxin domain-con 92.4 3.4 7.4E-05 41.7 13.5 117 163-284 142-264 (304)
250 smart00299 CLH Clathrin heavy 92.3 6.5 0.00014 35.6 14.8 44 225-269 11-54 (140)
251 PRK11906 transcriptional regul 91.9 4.3 9.3E-05 43.9 14.5 93 218-314 335-432 (458)
252 COG3898 Uncharacterized membra 91.8 19 0.00041 37.8 31.0 280 125-427 96-392 (531)
253 KOG0543 FKBP-type peptidyl-pro 91.8 1.9 4.2E-05 45.3 11.4 93 222-317 258-354 (397)
254 PF07035 Mic1: Colon cancer-as 91.7 11 0.00025 35.0 15.4 134 241-390 14-147 (167)
255 KOG2041 WD40 repeat protein [G 91.6 28 0.00061 39.4 31.4 53 584-636 1022-1075(1189)
256 PF13428 TPR_14: Tetratricopep 91.4 0.42 9.2E-06 33.2 4.5 34 72-107 2-35 (44)
257 COG4105 ComL DNA uptake lipopr 91.3 17 0.00036 36.2 18.9 57 369-426 173-232 (254)
258 KOG2610 Uncharacterized conser 91.2 5 0.00011 41.0 13.1 149 124-282 114-273 (491)
259 COG3898 Uncharacterized membra 91.2 22 0.00048 37.4 28.9 284 168-468 97-398 (531)
260 PRK11906 transcriptional regul 91.1 8.4 0.00018 41.8 15.6 58 222-280 373-431 (458)
261 KOG4555 TPR repeat-containing 90.9 2.7 5.9E-05 36.6 9.5 87 164-252 52-146 (175)
262 KOG1920 IkappaB kinase complex 90.9 28 0.0006 42.1 20.6 156 205-389 894-1052(1265)
263 PF13428 TPR_14: Tetratricopep 90.6 0.45 9.8E-06 33.1 4.0 39 158-198 4-42 (44)
264 COG4785 NlpI Lipoprotein NlpI, 90.0 18 0.00038 34.9 14.8 176 237-427 81-266 (297)
265 PF04053 Coatomer_WDAD: Coatom 90.0 6.1 0.00013 43.6 14.0 155 229-421 269-425 (443)
266 COG0457 NrfG FOG: TPR repeat [ 89.9 20 0.00043 34.9 24.9 197 224-426 62-264 (291)
267 PF10602 RPN7: 26S proteasome 89.6 2.8 6.1E-05 39.8 9.7 63 222-284 37-101 (177)
268 PF13281 DUF4071: Domain of un 89.5 33 0.00071 36.7 22.2 109 127-267 117-228 (374)
269 KOG4234 TPR repeat-containing 89.4 4 8.7E-05 38.5 10.0 96 78-184 102-197 (271)
270 KOG2280 Vacuolar assembly/sort 89.2 47 0.001 38.2 27.5 24 222-245 508-531 (829)
271 PF10602 RPN7: 26S proteasome 89.2 4.5 9.8E-05 38.4 10.8 104 71-181 36-139 (177)
272 PF13176 TPR_7: Tetratricopept 89.0 0.79 1.7E-05 30.2 4.0 25 224-248 2-26 (36)
273 PF04184 ST7: ST7 protein; In 89.0 16 0.00034 39.9 15.4 60 225-284 263-323 (539)
274 PF13431 TPR_17: Tetratricopep 89.0 0.31 6.7E-06 31.7 1.9 32 60-92 3-34 (34)
275 PF13176 TPR_7: Tetratricopept 88.8 0.57 1.2E-05 30.9 3.2 28 73-100 1-28 (36)
276 COG3118 Thioredoxin domain-con 88.4 31 0.00068 35.1 17.3 149 196-344 139-292 (304)
277 smart00299 CLH Clathrin heavy 88.3 19 0.00042 32.5 15.2 23 438-460 12-34 (140)
278 COG3629 DnrI DNA-binding trans 88.2 5.2 0.00011 40.6 10.9 78 549-627 154-236 (280)
279 PF09613 HrpB1_HrpK: Bacterial 88.0 12 0.00027 34.3 12.1 63 115-185 12-74 (160)
280 KOG1586 Protein required for f 87.9 29 0.00062 34.0 19.3 61 227-287 119-185 (288)
281 TIGR02561 HrpB1_HrpK type III 87.6 15 0.00033 33.2 12.1 62 116-185 13-74 (153)
282 PF09205 DUF1955: Domain of un 87.5 20 0.00042 31.7 15.7 134 302-464 15-151 (161)
283 PF07035 Mic1: Colon cancer-as 87.3 25 0.00054 32.8 15.5 38 419-456 15-52 (167)
284 COG3629 DnrI DNA-binding trans 87.1 5.3 0.00012 40.6 10.3 76 222-298 154-234 (280)
285 TIGR02561 HrpB1_HrpK type III 87.0 11 0.00023 34.2 10.8 63 155-219 10-72 (153)
286 KOG0276 Vesicle coat complex C 86.5 5.2 0.00011 44.1 10.2 151 81-281 596-746 (794)
287 KOG0545 Aryl-hydrocarbon recep 86.5 12 0.00025 36.7 11.4 58 155-214 230-287 (329)
288 PF02259 FAT: FAT domain; Int 86.3 48 0.001 35.4 18.4 65 547-611 145-212 (352)
289 KOG1464 COP9 signalosome, subu 86.3 34 0.00073 34.1 14.6 54 84-141 40-93 (440)
290 COG5107 RNA14 Pre-mRNA 3'-end 86.3 52 0.0011 35.4 31.3 129 514-649 396-530 (660)
291 COG2840 Uncharacterized protei 86.0 1.4 3.1E-05 41.3 5.1 57 713-779 98-154 (184)
292 PF00515 TPR_1: Tetratricopept 84.6 2.3 4.9E-05 27.3 4.3 29 72-100 2-30 (34)
293 KOG2114 Vacuolar assembly/sort 84.4 91 0.002 36.5 26.4 156 64-247 361-516 (933)
294 PF07719 TPR_2: Tetratricopept 84.3 2.1 4.7E-05 27.3 4.1 29 72-100 2-30 (34)
295 PF09205 DUF1955: Domain of un 84.2 12 0.00027 32.8 9.5 83 205-288 70-152 (161)
296 KOG2610 Uncharacterized conser 83.8 42 0.0009 34.6 14.4 147 304-458 118-272 (491)
297 COG2909 MalT ATP-dependent tra 83.5 1E+02 0.0022 36.5 25.9 193 266-462 425-647 (894)
298 PF09613 HrpB1_HrpK: Bacterial 83.3 22 0.00047 32.7 11.3 36 155-192 10-45 (160)
299 COG2976 Uncharacterized protei 83.3 35 0.00076 32.5 12.8 91 161-251 95-189 (207)
300 PF13431 TPR_17: Tetratricopep 82.0 1.6 3.5E-05 28.3 2.7 24 218-241 10-33 (34)
301 KOG1920 IkappaB kinase complex 81.2 1.4E+02 0.0031 36.5 24.5 187 227-458 857-1051(1265)
302 KOG4234 TPR repeat-containing 80.9 5.9 0.00013 37.4 6.8 94 123-251 105-198 (271)
303 PF13374 TPR_10: Tetratricopep 80.9 3 6.6E-05 28.1 4.1 31 71-101 2-32 (42)
304 KOG4570 Uncharacterized conser 79.8 15 0.00033 37.3 9.7 100 251-352 59-163 (418)
305 KOG4570 Uncharacterized conser 79.7 8.5 0.00018 39.0 8.0 108 318-428 58-165 (418)
306 PF00515 TPR_1: Tetratricopept 78.9 3.6 7.9E-05 26.3 3.7 29 222-250 2-30 (34)
307 PF06552 TOM20_plant: Plant sp 78.7 29 0.00063 32.6 10.5 42 237-286 96-137 (186)
308 PF02259 FAT: FAT domain; Int 78.3 99 0.0022 32.9 18.6 66 396-461 144-212 (352)
309 KOG1550 Extracellular protein 77.7 88 0.0019 36.0 16.8 84 375-462 261-357 (552)
310 PF08424 NRDE-2: NRDE-2, neces 77.5 28 0.00061 36.8 11.9 121 61-187 56-186 (321)
311 COG5159 RPN6 26S proteasome re 76.9 88 0.0019 31.6 19.9 139 124-283 14-152 (421)
312 PF13762 MNE1: Mitochondrial s 76.7 42 0.00092 30.4 10.8 51 617-669 78-128 (145)
313 KOG0276 Vesicle coat complex C 76.5 59 0.0013 36.4 13.6 148 234-423 599-746 (794)
314 COG2976 Uncharacterized protei 76.4 45 0.00097 31.8 11.1 89 196-286 94-189 (207)
315 TIGR02508 type_III_yscG type I 76.0 26 0.00057 29.1 8.3 79 236-319 20-98 (115)
316 PF13374 TPR_10: Tetratricopep 75.2 7.1 0.00015 26.2 4.6 29 583-611 2-30 (42)
317 PF07719 TPR_2: Tetratricopept 74.6 5.6 0.00012 25.3 3.7 28 223-250 3-30 (34)
318 COG5159 RPN6 26S proteasome re 74.5 1E+02 0.0022 31.2 15.4 211 75-317 7-234 (421)
319 COG0457 NrfG FOG: TPR repeat [ 74.1 86 0.0019 30.1 26.1 224 234-462 36-265 (291)
320 PRK11619 lytic murein transgly 73.9 1.9E+02 0.0041 34.0 27.3 118 338-461 255-374 (644)
321 COG1747 Uncharacterized N-term 73.1 1.5E+02 0.0034 32.6 23.7 174 192-373 67-249 (711)
322 PF04184 ST7: ST7 protein; In 72.8 1.6E+02 0.0034 32.6 16.8 72 368-440 264-338 (539)
323 PF04097 Nic96: Nup93/Nic96; 72.0 2E+02 0.0044 33.5 22.7 213 194-427 114-356 (613)
324 PF13174 TPR_6: Tetratricopept 72.0 6.9 0.00015 24.6 3.6 28 158-185 3-30 (33)
325 PF10345 Cohesin_load: Cohesin 70.8 2.2E+02 0.0047 33.3 43.6 329 70-438 58-452 (608)
326 PF00637 Clathrin: Region in C 70.7 1.9 4E-05 39.4 0.9 88 368-462 12-99 (143)
327 cd00923 Cyt_c_Oxidase_Va Cytoc 70.4 36 0.00077 28.2 7.8 60 307-371 25-84 (103)
328 PF07721 TPR_4: Tetratricopept 70.2 6.2 0.00013 23.6 2.8 23 73-95 3-25 (26)
329 COG2909 MalT ATP-dependent tra 70.2 2.4E+02 0.0052 33.6 27.8 237 122-388 424-684 (894)
330 PF13174 TPR_6: Tetratricopept 70.1 7 0.00015 24.5 3.3 28 73-100 2-29 (33)
331 PF02284 COX5A: Cytochrome c o 70.0 29 0.00063 29.1 7.4 60 307-371 28-87 (108)
332 cd00923 Cyt_c_Oxidase_Va Cytoc 69.3 34 0.00074 28.4 7.5 60 381-441 25-84 (103)
333 COG1747 Uncharacterized N-term 68.2 2E+02 0.0043 31.9 21.2 186 360-593 63-249 (711)
334 PRK04946 hypothetical protein; 67.9 7.1 0.00015 36.9 4.1 53 712-779 96-148 (181)
335 KOG4648 Uncharacterized conser 67.1 22 0.00048 36.6 7.5 46 164-211 106-151 (536)
336 PF13762 MNE1: Mitochondrial s 66.4 1E+02 0.0022 28.0 13.0 98 314-411 27-128 (145)
337 PF02284 COX5A: Cytochrome c o 66.1 30 0.00064 29.0 6.7 60 381-441 28-87 (108)
338 PF04910 Tcf25: Transcriptiona 65.7 2E+02 0.0043 31.0 17.7 147 125-284 6-167 (360)
339 KOG1550 Extracellular protein 65.3 2.6E+02 0.0056 32.2 21.5 174 171-352 228-425 (552)
340 KOG0686 COP9 signalosome, subu 65.0 2E+02 0.0044 30.8 14.1 91 222-312 151-252 (466)
341 PF13181 TPR_8: Tetratricopept 64.9 14 0.00031 23.4 4.0 27 223-249 3-29 (34)
342 PF13929 mRNA_stabil: mRNA sta 64.4 1.7E+02 0.0038 29.9 14.6 63 360-422 199-262 (292)
343 KOG1586 Protein required for f 64.0 1.6E+02 0.0034 29.2 22.2 73 597-669 128-209 (288)
344 PF13929 mRNA_stabil: mRNA sta 63.7 1.8E+02 0.0039 29.8 16.6 124 259-388 134-263 (292)
345 COG3947 Response regulator con 63.0 1.8E+02 0.004 29.7 15.9 53 556-609 287-339 (361)
346 PF13181 TPR_8: Tetratricopept 62.5 20 0.00042 22.7 4.4 29 72-100 2-30 (34)
347 PF10345 Cohesin_load: Cohesin 61.9 3.2E+02 0.0068 32.0 43.1 126 226-352 105-253 (608)
348 PF11207 DUF2989: Protein of u 61.5 63 0.0014 31.1 9.0 20 397-416 177-196 (203)
349 PF07163 Pex26: Pex26 protein; 60.1 2E+02 0.0044 29.2 14.4 107 71-184 35-147 (309)
350 KOG2297 Predicted translation 58.3 2.3E+02 0.0049 29.2 18.2 67 560-636 267-339 (412)
351 KOG4648 Uncharacterized conser 58.2 33 0.00072 35.3 6.9 52 198-249 104-159 (536)
352 COG4455 ImpE Protein of avirul 58.1 61 0.0013 31.5 8.2 53 555-608 8-60 (273)
353 COG5187 RPN7 26S proteasome re 57.9 2.2E+02 0.0048 29.0 14.2 137 287-426 77-220 (412)
354 TIGR02508 type_III_yscG type I 57.8 1.1E+02 0.0025 25.6 9.1 87 529-623 21-107 (115)
355 PF11207 DUF2989: Protein of u 57.3 95 0.0021 29.9 9.4 79 373-453 117-198 (203)
356 TIGR03504 FimV_Cterm FimV C-te 57.2 26 0.00057 24.3 4.3 26 226-251 4-29 (44)
357 TIGR03504 FimV_Cterm FimV C-te 56.8 22 0.00047 24.7 3.8 26 76-101 4-29 (44)
358 KOG4642 Chaperone-dependent E3 56.7 87 0.0019 30.9 9.1 76 125-210 22-97 (284)
359 smart00028 TPR Tetratricopepti 55.7 17 0.00037 21.7 3.2 29 72-100 2-30 (34)
360 PRK15180 Vi polysaccharide bio 55.1 1.3E+02 0.0029 32.7 10.9 54 336-394 335-388 (831)
361 PF10579 Rapsyn_N: Rapsyn N-te 54.2 42 0.0009 26.7 5.4 49 125-178 18-66 (80)
362 PRK09687 putative lyase; Provi 53.7 2.7E+02 0.0059 28.7 28.0 233 321-629 34-278 (280)
363 PF00637 Clathrin: Region in C 53.5 2.9 6.3E-05 38.1 -1.2 76 554-636 13-88 (143)
364 COG4455 ImpE Protein of avirul 53.4 94 0.002 30.2 8.6 55 328-387 5-59 (273)
365 PF09477 Type_III_YscG: Bacter 53.1 1.4E+02 0.0031 25.4 9.2 81 234-319 19-99 (116)
366 COG3825 Uncharacterized protei 52.8 1.4E+02 0.003 30.5 10.1 59 604-666 4-62 (393)
367 PF09425 CCT_2: Divergent CCT 52.6 8 0.00017 23.4 1.0 17 832-848 3-19 (27)
368 COG3947 Response regulator con 51.2 2.9E+02 0.0063 28.3 15.5 61 400-461 281-341 (361)
369 PF14853 Fis1_TPR_C: Fis1 C-te 49.1 1E+02 0.0022 22.4 6.6 31 76-108 6-36 (53)
370 PF11848 DUF3368: Domain of un 48.9 62 0.0014 22.9 5.3 27 597-623 16-42 (48)
371 KOG4814 Uncharacterized conser 48.8 1.7E+02 0.0037 33.3 10.8 92 120-215 361-452 (872)
372 PF09986 DUF2225: Uncharacteri 48.5 1.7E+02 0.0036 28.8 10.1 97 82-185 88-195 (214)
373 KOG0551 Hsp90 co-chaperone CNS 48.4 1.1E+02 0.0023 31.9 8.6 111 59-182 64-180 (390)
374 PHA02875 ankyrin repeat protei 47.5 1.8E+02 0.0038 32.0 11.6 13 767-779 392-404 (413)
375 PF14689 SPOB_a: Sensor_kinase 47.3 62 0.0013 24.4 5.4 45 340-390 6-50 (62)
376 PF12968 DUF3856: Domain of Un 46.4 1.8E+02 0.004 25.3 8.4 69 73-141 57-128 (144)
377 PF12862 Apc5: Anaphase-promot 46.3 66 0.0014 26.6 6.1 63 123-185 8-71 (94)
378 PF09670 Cas_Cas02710: CRISPR- 45.1 1.6E+02 0.0034 32.0 10.3 58 120-183 138-197 (379)
379 PF10579 Rapsyn_N: Rapsyn N-te 44.9 68 0.0015 25.5 5.3 51 81-136 16-66 (80)
380 PF09986 DUF2225: Uncharacteri 43.9 3.1E+02 0.0068 26.9 11.2 31 222-252 166-196 (214)
381 PF10255 Paf67: RNA polymerase 43.2 1E+02 0.0022 33.5 8.2 28 222-249 165-192 (404)
382 KOG0687 26S proteasome regulat 42.9 2.3E+02 0.0049 29.5 9.9 110 223-332 106-224 (393)
383 PF11846 DUF3366: Domain of un 42.4 1.2E+02 0.0025 29.2 8.1 52 560-611 120-172 (193)
384 KOG4077 Cytochrome c oxidase, 41.7 1.6E+02 0.0034 25.9 7.4 60 381-441 67-126 (149)
385 KOG1258 mRNA processing protei 41.6 5.8E+02 0.013 29.0 35.6 190 396-636 295-493 (577)
386 PF00244 14-3-3: 14-3-3 protei 41.4 3.3E+02 0.0071 27.2 11.1 59 226-284 6-65 (236)
387 COG5108 RPO41 Mitochondrial DN 41.2 1.4E+02 0.0031 33.9 8.9 78 553-630 33-115 (1117)
388 PF14561 TPR_20: Tetratricopep 40.4 2E+02 0.0042 23.7 7.8 31 155-185 22-52 (90)
389 PRK13184 pknD serine/threonine 39.8 8.1E+02 0.018 30.2 24.8 311 121-460 483-831 (932)
390 KOG4642 Chaperone-dependent E3 39.6 3.1E+02 0.0067 27.3 9.9 40 168-209 23-62 (284)
391 PF07163 Pex26: Pex26 protein; 39.4 3.6E+02 0.0077 27.6 10.5 17 331-347 90-106 (309)
392 PF11848 DUF3368: Domain of un 39.4 96 0.0021 21.9 5.0 33 559-591 13-45 (48)
393 KOG2908 26S proteasome regulat 39.3 3.7E+02 0.008 28.2 10.8 62 329-391 80-143 (380)
394 PRK15180 Vi polysaccharide bio 39.2 5.6E+02 0.012 28.2 15.1 53 198-250 330-386 (831)
395 PF13934 ELYS: Nuclear pore co 38.9 4E+02 0.0087 26.4 15.7 119 130-268 63-184 (226)
396 PRK10564 maltose regulon perip 38.9 56 0.0012 33.5 5.1 45 581-625 254-299 (303)
397 KOG2066 Vacuolar assembly/sort 38.7 7.3E+02 0.016 29.3 27.7 152 120-283 363-532 (846)
398 PF11663 Toxin_YhaV: Toxin wit 38.7 32 0.00069 30.5 2.9 23 640-664 114-136 (140)
399 KOG1258 mRNA processing protei 38.5 6.4E+02 0.014 28.7 35.8 111 130-250 62-180 (577)
400 cd00280 TRFH Telomeric Repeat 38.5 3.6E+02 0.0077 25.7 13.5 41 227-270 117-157 (200)
401 PF04910 Tcf25: Transcriptiona 38.2 5.4E+02 0.012 27.7 18.4 55 85-140 8-67 (360)
402 PF14689 SPOB_a: Sensor_kinase 37.1 84 0.0018 23.7 4.7 25 586-610 26-50 (62)
403 PF14853 Fis1_TPR_C: Fis1 C-te 37.0 1.2E+02 0.0025 22.1 5.2 36 225-262 5-40 (53)
404 KOG4507 Uncharacterized conser 36.7 1.2E+02 0.0026 34.0 7.4 98 168-267 620-721 (886)
405 PF14561 TPR_20: Tetratricopep 36.7 2.4E+02 0.0052 23.2 8.1 56 216-271 17-73 (90)
406 cd00280 TRFH Telomeric Repeat 36.5 2.3E+02 0.0049 26.9 8.1 55 87-141 85-139 (200)
407 PF06552 TOM20_plant: Plant sp 35.9 3.9E+02 0.0084 25.4 11.5 57 309-373 55-123 (186)
408 cd08819 CARD_MDA5_2 Caspase ac 35.6 2.2E+02 0.0047 23.3 6.9 68 381-454 20-87 (88)
409 COG2178 Predicted RNA-binding 35.1 3.8E+02 0.0083 25.7 9.5 62 329-392 34-98 (204)
410 KOG2005 26S proteasome regulat 33.4 8.2E+02 0.018 28.4 27.2 139 510-651 500-652 (878)
411 KOG1839 Uncharacterized protei 32.9 2.2E+02 0.0047 35.5 9.5 114 71-184 973-1086(1236)
412 KOG4077 Cytochrome c oxidase, 32.8 2.6E+02 0.0057 24.6 7.4 42 569-610 70-111 (149)
413 PF12862 Apc5: Anaphase-promot 31.9 1.7E+02 0.0037 24.1 6.4 60 82-142 9-70 (94)
414 KOG0376 Serine-threonine phosp 31.2 1.3E+02 0.0029 32.9 6.7 97 166-266 15-115 (476)
415 PF09797 NatB_MDM20: N-acetylt 31.0 4E+02 0.0086 28.7 10.8 148 129-280 151-310 (365)
416 PRK10564 maltose regulon perip 30.2 89 0.0019 32.1 5.0 43 545-587 253-296 (303)
417 TIGR02710 CRISPR-associated pr 29.9 6.8E+02 0.015 27.1 11.7 61 77-138 136-196 (380)
418 KOG2066 Vacuolar assembly/sort 29.6 1E+03 0.022 28.3 25.0 149 198-351 363-532 (846)
419 PF07575 Nucleopor_Nup85: Nup8 29.6 2.8E+02 0.006 32.1 9.7 76 309-390 390-465 (566)
420 PF10475 DUF2450: Protein of u 29.2 4.1E+02 0.0089 27.5 10.0 53 226-284 103-155 (291)
421 PF11663 Toxin_YhaV: Toxin wit 28.9 47 0.001 29.5 2.4 33 232-266 106-138 (140)
422 KOG0376 Serine-threonine phosp 28.8 1.2E+02 0.0026 33.2 5.9 87 120-216 11-97 (476)
423 PHA03100 ankyrin repeat protei 28.8 3E+02 0.0065 30.9 9.8 74 533-615 230-308 (480)
424 PF13384 HTH_23: Homeodomain-l 28.8 20 0.00043 25.5 0.1 20 824-843 21-40 (50)
425 KOG2908 26S proteasome regulat 28.6 6.7E+02 0.014 26.4 10.7 85 368-452 80-176 (380)
426 PF10366 Vps39_1: Vacuolar sor 28.6 2.8E+02 0.0061 23.7 7.1 26 586-611 42-67 (108)
427 KOG0991 Replication factor C, 28.5 6E+02 0.013 25.3 10.9 99 558-662 169-279 (333)
428 PF14669 Asp_Glu_race_2: Putat 28.1 5.4E+02 0.012 24.7 15.4 84 193-281 109-206 (233)
429 PRK10941 hypothetical protein; 28.1 2.5E+02 0.0055 28.7 7.9 46 165-212 191-236 (269)
430 PRK14956 DNA polymerase III su 27.8 9.1E+02 0.02 27.1 12.7 37 397-433 247-283 (484)
431 PF09670 Cas_Cas02710: CRISPR- 27.4 7E+02 0.015 27.0 11.7 23 228-250 138-160 (379)
432 PRK11619 lytic murein transgly 27.3 1.1E+03 0.023 27.8 40.6 115 304-425 256-373 (644)
433 PHA03100 ankyrin repeat protei 27.0 2.1E+02 0.0045 32.2 8.2 13 767-779 453-465 (480)
434 PF08311 Mad3_BUB1_I: Mad3/BUB 27.0 4.4E+02 0.0096 23.2 11.4 87 125-246 38-124 (126)
435 PF10255 Paf67: RNA polymerase 26.9 2.9E+02 0.0064 30.0 8.5 110 73-182 77-191 (404)
436 PF12796 Ank_2: Ankyrin repeat 26.6 2.1E+02 0.0046 22.8 6.1 81 557-655 3-86 (89)
437 PF12926 MOZART2: Mitotic-spin 26.4 3.6E+02 0.0078 22.0 8.0 63 398-462 10-72 (88)
438 PF10475 DUF2450: Protein of u 25.9 6.5E+02 0.014 26.1 10.8 112 330-456 104-220 (291)
439 PF10366 Vps39_1: Vacuolar sor 25.8 3.4E+02 0.0073 23.2 7.2 27 400-426 41-67 (108)
440 KOG2297 Predicted translation 25.4 7.8E+02 0.017 25.5 18.5 22 549-570 322-343 (412)
441 COG2178 Predicted RNA-binding 25.2 6.2E+02 0.013 24.3 10.5 79 529-617 19-102 (204)
442 KOG1308 Hsp70-interacting prot 24.4 47 0.001 34.6 1.9 44 167-212 126-169 (377)
443 PF11846 DUF3366: Domain of un 24.1 3.8E+02 0.0082 25.6 8.2 29 361-389 142-170 (193)
444 PRK10941 hypothetical protein; 23.9 6.7E+02 0.014 25.7 10.1 63 222-285 182-244 (269)
445 KOG0292 Vesicle coat complex C 23.9 2E+02 0.0043 34.1 6.7 43 203-246 655-697 (1202)
446 PRK14958 DNA polymerase III su 23.8 1E+03 0.022 27.1 12.5 75 540-617 192-279 (509)
447 PF08424 NRDE-2: NRDE-2, neces 23.7 8.7E+02 0.019 25.5 16.8 63 128-200 46-108 (321)
448 PHA02875 ankyrin repeat protei 23.1 2.8E+02 0.0062 30.3 8.1 43 409-455 176-221 (413)
449 PF07720 TPR_3: Tetratricopept 23.1 1.5E+02 0.0032 19.5 3.4 23 73-95 3-25 (36)
450 PF05476 PET122: PET122; Inte 22.9 7.9E+02 0.017 24.7 10.9 110 559-670 21-138 (267)
451 PF09454 Vps23_core: Vps23 cor 22.9 1.8E+02 0.004 22.2 4.4 50 580-630 5-54 (65)
452 PF11817 Foie-gras_1: Foie gra 22.8 4.6E+02 0.01 26.3 8.8 86 305-392 161-247 (247)
453 COG5108 RPO41 Mitochondrial DN 22.5 4.5E+02 0.0097 30.2 8.8 73 520-595 33-115 (1117)
454 COG4976 Predicted methyltransf 22.3 1.7E+02 0.0037 28.8 5.0 59 80-148 4-62 (287)
455 PF09454 Vps23_core: Vps23 cor 22.3 2.1E+02 0.0045 21.9 4.6 51 359-410 4-54 (65)
456 KOG0292 Vesicle coat complex C 22.2 2E+02 0.0043 34.1 6.3 69 167-246 655-723 (1202)
457 PRK00409 recombination and DNA 21.8 1.1E+02 0.0024 36.8 4.7 54 711-779 704-757 (782)
458 KOG0686 COP9 signalosome, subu 21.5 1.1E+03 0.023 25.7 19.3 65 325-391 151-215 (466)
459 COG0320 LipA Lipoate synthase 21.0 88 0.0019 31.5 2.9 50 269-320 193-242 (306)
460 COG5187 RPN7 26S proteasome re 20.9 9.2E+02 0.02 24.8 13.9 72 582-655 114-189 (412)
461 PRK08691 DNA polymerase III su 20.6 9.4E+02 0.02 28.5 11.4 45 531-577 182-227 (709)
462 KOG2471 TPR repeat-containing 20.6 1.1E+03 0.025 26.2 11.1 60 258-317 621-683 (696)
463 PF01710 HTH_Tnp_IS630: Transp 20.5 42 0.00092 29.4 0.6 20 826-845 24-43 (119)
464 KOG4521 Nuclear pore complex, 20.0 1.8E+03 0.039 27.8 13.7 76 196-273 988-1071(1480)
465 KOG3364 Membrane protein invol 20.0 3.9E+02 0.0085 24.0 6.3 47 169-215 49-95 (149)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.1e-70 Score=646.05 Aligned_cols=613 Identities=21% Similarity=0.349 Sum_probs=523.6
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCC-hhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGN-VSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~ 149 (850)
...|..+...|++.|++++|+++|+.|.+.+.. ++.. ....++..+.+.|.+++|..+|+.|.. |+..
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v-------~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~ 438 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKI-------YHAKFFKACKKQRAVKEAFRFAKLIRN----PTLS 438 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHH-------HHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHH
Confidence 677777888888888888888888888887643 2211 122334456677888888888887762 5543
Q ss_pred cchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHH
Q 003082 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (850)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~ 229 (850)
+++.++..| ++.|++++|.++++.|.+.++.|+ ..+|+.||.
T Consensus 439 ----Tyn~LL~a~---~k~g~~e~A~~lf~~M~~~Gl~pD-------------------------------~~tynsLI~ 480 (1060)
T PLN03218 439 ----TFNMLMSVC---ASSQDIDGALRVLRLVQEAGLKAD-------------------------------CKLYTTLIS 480 (1060)
T ss_pred ----HHHHHHHHH---HhCcCHHHHHHHHHHHHHcCCCCC-------------------------------HHHHHHHHH
Confidence 355555554 357888888888888888776554 378999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhc--CChHH
Q 003082 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKF 307 (850)
Q Consensus 230 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~--~~~~~ 307 (850)
+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|++||.+++ |++++
T Consensus 481 ~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~de 560 (1060)
T PLN03218 481 TCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDR 560 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999865 69999
Q ss_pred HHHHHHHHHH--cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHH
Q 003082 308 TLEVYKNMQK--LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385 (850)
Q Consensus 308 a~~l~~~m~~--~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l 385 (850)
|.++|++|.. .|+.||..+|++||.+|++.|++++|.++|+.|.+ .| +.|+..+|+++|.+|++.|++++|.++
T Consensus 561 A~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e---~g-i~p~~~tynsLI~ay~k~G~~deAl~l 636 (1060)
T PLN03218 561 AFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE---YN-IKGTPEVYTIAVNSCSQKGDWDFALSI 636 (1060)
T ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---cC-CCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 9999999976 68999999999999999999999999999999987 44 789999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccc
Q 003082 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465 (850)
Q Consensus 386 ~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~ 465 (850)
|++|.+.|+.||..||+++|++|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|...
T Consensus 637 f~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~--- 713 (1060)
T PLN03218 637 YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI--- 713 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred ccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhc--cHHHHHHHHHHHHHcC
Q 003082 466 VALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVG 543 (850)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~--~~~~a~~l~~~m~~~g 543 (850)
|+.||..+||++|.+|++ +.++|.++|++|.+.|
T Consensus 714 --------------------------------------------g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G 749 (1060)
T PLN03218 714 --------------------------------------------KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749 (1060)
T ss_pred --------------------------------------------CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 368999999999999985 6899999999999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----c-------------------CCHH
Q 003082 544 LSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR----S-------------------KRLK 600 (850)
Q Consensus 544 ~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~----~-------------------g~~~ 600 (850)
+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|++++..|.+ . +..+
T Consensus 750 i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~ 829 (1060)
T PLN03218 750 LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTS 829 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHH
Confidence 9999999999999999999999999999999999999999999999976432 1 2346
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhhhhhcccc
Q 003082 601 QAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCEGVIQDKNQNQGE 680 (850)
Q Consensus 601 ~A~~l~~~m~~~g~~p~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~~ 680 (850)
+|..+|++|.+.|+.||..||+.+|.++++.+..+. +..++++|...+..|+..+|++||+++++-
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~---~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~----------- 895 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATL---RNRLIENLGISADSQKQSNLSTLVDGFGEY----------- 895 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHH---HHHHHHHhccCCCCcchhhhHHHHHhhccC-----------
Confidence 899999999999999999999999988878887665 666888898899999999999999988531
Q ss_pred hhhhhhcCCCchhHHHHHHHHHHHhhhhh---hhHHHHhhccchhHHHHHHHHHHHHHHhhhhcCCCCCCcEE-------
Q 003082 681 VTLCRRTNSQRPQSLLLEKVAVHLQKSAA---ENLAIDLRGLTKVEARIIVLAVLRMMKENYSLGVPVKDDLM------- 750 (850)
Q Consensus 681 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~~~~l~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~------- 750 (850)
.+++..++.|+...++.++.. ..|.+|++.|+.++|...++.||+.++.+...|..+|...+
T Consensus 896 --------~~~A~~l~~em~~~Gi~p~~~~~~~~~~~d~~~~~~~aa~~~l~~wl~~~~~~~~~g~~lp~~~~~~~~~~~ 967 (1060)
T PLN03218 896 --------DPRAFSLLEEAASLGVVPSVSFKKSPIVIDAEELPVFAAEVYLLTILKGLKHRLAAGAKLPNVTILLPTEKK 967 (1060)
T ss_pred --------hHHHHHHHHHHHHcCCCCCcccccCceEEEcccCcchhHHHHHHHHHHHHHHHHhccCcCCcceeeeccccc
Confidence 134677888888888777663 35889999999999999999999999999999999999888
Q ss_pred -EEecCCcccccCcccchHHHHHHHHHhhhcccceEeccCCccccchhhhhhhccccchhhhhhhcccccccccccchhh
Q 003082 751 -IVLGPNKVNKIQAKHDLEVKDAITKLLQDDLGLKVFLDGPSIQHKNAHMQKLLDSESNMAETLHIELKSSTRRPKILQR 829 (850)
Q Consensus 751 -i~~g~gk~s~~~g~~~~~v~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (850)
+.|+-|.++.... .-+=.+|..+|++ |+.+-- .. |.- |.
T Consensus 968 ~~~~~~g~~~~~~~---~~~~~~~~~~l~~-l~~~~~--------~~---------------------------~~~-g~ 1007 (1060)
T PLN03218 968 EIYTPKGEKTINLA---GRVGQAVAALLRR-LGLPYQ--------GS---------------------------ESH-GK 1007 (1060)
T ss_pred eeeccCCchhHHHH---HHHHHHHHHHHHH-hCCCCC--------CC---------------------------CCC-Ce
Confidence 4444444322221 2255777778866 332211 11 222 66
Q ss_pred ccccccchHHHHHhhh
Q 003082 830 LKVPKKSLHHWLQRRV 845 (850)
Q Consensus 830 ~~~~~~~~~~~~~~~~ 845 (850)
+..+..+|.+|||-|.
T Consensus 1008 ~~~~~~~~~~wl~~~~ 1023 (1060)
T PLN03218 1008 LRINGLSLRRWFQPKL 1023 (1060)
T ss_pred EEeccHHHHHHhcccC
Confidence 8899999999999886
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.1e-66 Score=618.48 Aligned_cols=616 Identities=17% Similarity=0.172 Sum_probs=511.8
Q ss_pred hhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhH----------------------------HHHHHHHHH
Q 003082 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLS----------------------------LEMVASGIV 121 (850)
Q Consensus 70 ~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~----------------------------~~~~~~~~~ 121 (850)
+...++.++..|++.|++++|+.+|+.|.+.|..|+....... ....+.++.
T Consensus 50 ~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~ 129 (857)
T PLN03077 50 STHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLS 129 (857)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHH
Confidence 3677888999999999999999999999887765554332111 112244566
Q ss_pred HhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHH
Q 003082 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (850)
Q Consensus 122 ~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (850)
.|.+.|+++.|..+|++|. .|+..+ +++++. .|++.|++++|+++|++|...++.|+ ..++..++++|
T Consensus 130 ~~~~~g~~~~A~~~f~~m~----~~d~~~----~n~li~---~~~~~g~~~~A~~~f~~M~~~g~~Pd-~~t~~~ll~~~ 197 (857)
T PLN03077 130 MFVRFGELVHAWYVFGKMP----ERDLFS----WNVLVG---GYAKAGYFDEALCLYHRMLWAGVRPD-VYTFPCVLRTC 197 (857)
T ss_pred HHHhCCChHHHHHHHhcCC----CCCeeE----HHHHHH---HHHhCCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHh
Confidence 7788899999999998886 355443 555553 35578999999999999998888774 46688899999
Q ss_pred HcCCChHHHHHHhhhC-----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003082 202 VNKPDVNLAIRYACIV-----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276 (850)
Q Consensus 202 ~~~~~~~~A~~~~~~~-----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 276 (850)
...+++..+.+++..+ .++..++++|+.+|++.|++++|.++|++|.. ||..+||++|.+|++.|++++|+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl 273 (857)
T PLN03077 198 GGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGL 273 (857)
T ss_pred CCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHH
Confidence 9999998888877653 45668999999999999999999999999964 79999999999999999999999
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHhhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 003082 277 AIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354 (850)
Q Consensus 277 ~~~~~m~~~g~~pd~~t~~~ll~~~~--~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~ 354 (850)
++|++|.+.|+.||..||+++|.+++ ++.+.+.+++..|.+.|+.||..+||+||.+|++.|++++|.++|++|.
T Consensus 274 ~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--- 350 (857)
T PLN03077 274 ELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME--- 350 (857)
T ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC---
Confidence 99999999999999999999999865 6999999999999999999999999999999999999999999999984
Q ss_pred hcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 003082 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434 (850)
Q Consensus 355 ~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 434 (850)
.||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++++.|.+.|+.|+..
T Consensus 351 -----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~ 425 (857)
T PLN03077 351 -----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV 425 (857)
T ss_pred -----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchH
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccC-----ccCCchhhhhhhhhhhcccccCCCCCcCCCccccccccc
Q 003082 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE-----DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF 509 (850)
Q Consensus 435 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (850)
+|++||++|++.|++++|.++|++|.+.+.. .++. ...+....+ ..++..|..
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~v-s~~~mi~~~~~~g~~~eA--------------------~~lf~~m~~- 483 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIPEKDVI-SWTSIIAGLRLNNRCFEA--------------------LIFFRQMLL- 483 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCCee-eHHHHHHHHHHCCCHHHH--------------------HHHHHHHHh-
Confidence 9999999999999999999999999765421 1100 011111111 112223332
Q ss_pred CCCcCHHHHHHHHHHHhc--cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003082 510 SFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYT 587 (850)
Q Consensus 510 ~~~p~~~t~~~li~~~~~--~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~ 587 (850)
++.||..||+.+|.+|++ +.+.+.+++..|.+.|+.+|..++|+||++|+++|++++|.++|++| .||.++||
T Consensus 484 ~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n 558 (857)
T PLN03077 484 TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWN 558 (857)
T ss_pred CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHH
Confidence 589999999999999985 68999999999999999999999999999999999999999999987 68999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHH
Q 003082 588 TAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMW-KAGYKANDTYLKELIEEW 666 (850)
Q Consensus 588 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~-~~g~~p~~~~~~~li~~~ 666 (850)
++|.+|+++|+.++|.++|++|.+.|+.||.+||+++|.+|++.|.+++ ++++|++|. +.|+.|+..+|+++++.|
T Consensus 559 ~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~e---a~~~f~~M~~~~gi~P~~~~y~~lv~~l 635 (857)
T PLN03077 559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ---GLEYFHSMEEKYSITPNLKHYACVVDLL 635 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHH---HHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999777 788999999 689999999999999999
Q ss_pred Hh-hhhhhhhhcccch-------------hhhhhcCCCchhHHHHHHHHH---HHhhhhhhhHHHHhhccchhHHHHHHH
Q 003082 667 CE-GVIQDKNQNQGEV-------------TLCRRTNSQRPQSLLLEKVAV---HLQKSAAENLAIDLRGLTKVEARIIVL 729 (850)
Q Consensus 667 ~~-~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~e~~~~---~~~~~~~~~~~~~l~~~~~~~a~~~~~ 729 (850)
++ |.+.++.+....+ ..|+.... ..+.+.... .+.++....|.+..+.++..+....+.
T Consensus 636 ~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~----~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~ 711 (857)
T PLN03077 636 GRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRH----VELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVA 711 (857)
T ss_pred HhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHH
Confidence 99 6666665543332 11221111 111222222 234444455666556666666777788
Q ss_pred HHHHHHHhhhhcCC
Q 003082 730 AVLRMMKENYSLGV 743 (850)
Q Consensus 730 ~~l~~~~~~~~~~~ 743 (850)
.+.+.|++++....
T Consensus 712 ~vr~~M~~~g~~k~ 725 (857)
T PLN03077 712 RVRKTMRENGLTVD 725 (857)
T ss_pred HHHHHHHHcCCCCC
Confidence 88889998854443
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.6e-64 Score=593.94 Aligned_cols=521 Identities=19% Similarity=0.265 Sum_probs=459.7
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCC-CcchHHHHHHHHHh
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR-ADILFCNFVREFGK 233 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~-~~~~~~~li~~~~~ 233 (850)
...++..+..+.+.|++++|+++|+.|...+..+.+...+..++..|.+.|..++|+.+|+.++. +..+|+.++.+|++
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k 449 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCAS 449 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 33455556667789999999999999999887666666777889999999999999999988865 44789999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhc--CChHHHHHH
Q 003082 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEV 311 (850)
Q Consensus 234 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~--~~~~~a~~l 311 (850)
.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+++|.+++ |++++|.++
T Consensus 450 ~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~l 529 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGA 529 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999875 699999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003082 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391 (850)
Q Consensus 312 ~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 391 (850)
|++|.+.|+.||..+||.||.+|++.|++++|.++|++|... ..++.||..+|+++|.+|++.|++++|.++|++|.+
T Consensus 530 f~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~--~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 530 YGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE--THPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--cCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999752 123789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCc
Q 003082 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED 471 (850)
Q Consensus 392 ~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~ 471 (850)
.|+.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|++++++|++.|++++|.++|+.|.+.+
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G-------- 679 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG-------- 679 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred cCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhc--cHHHHHHHHHHHHHcCCCCCHH
Q 003082 472 YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHI 549 (850)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~--~~~~a~~l~~~m~~~g~~p~~~ 549 (850)
+.||..+|+++|.+|++ +.++|.++|++|.+.|+.||..
T Consensus 680 ---------------------------------------~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvv 720 (1060)
T PLN03218 680 ---------------------------------------IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVS 720 (1060)
T ss_pred ---------------------------------------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 68999999999999985 7899999999999999999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003082 550 SWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARS 629 (850)
Q Consensus 550 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~ 629 (850)
+||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|++|+..|.
T Consensus 721 tyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 721 TMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL 800 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997654
Q ss_pred h----cCChH----------------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhh-hhhhhhhcccchhhhhhcC
Q 003082 630 R----YGSLH----------------EVQQCLAVYQDMWKAGYKANDTYLKELIEEWCEG-VIQDKNQNQGEVTLCRRTN 688 (850)
Q Consensus 630 ~----~g~~~----------------~a~~a~~l~~~M~~~g~~p~~~~~~~li~~~~~~-~~~~~~~~~~~~~~~~~~~ 688 (850)
+ ++... -...|+.+|++|.+.|+.||..||+.+|.++|+. ...
T Consensus 801 ~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~---------------- 864 (1060)
T PLN03218 801 RRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDAT---------------- 864 (1060)
T ss_pred HHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHH----------------
Confidence 2 11110 0235899999999999999999999999877642 111
Q ss_pred CCchhHHHHHHHHHHHhhhhhhhHHHHhhccchhHHHHHHHHHHHHHHhhhhcCCCC
Q 003082 689 SQRPQSLLLEKVAVHLQKSAAENLAIDLRGLTKVEARIIVLAVLRMMKENYSLGVPV 745 (850)
Q Consensus 689 ~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~l~~~~~~~~~~~~~ 745 (850)
.+..++.+.......+ ...+|+..|+|++.. ...++.++++|...+..+...
T Consensus 865 --~~~~m~~~m~~~~~~~-~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 865 --LRNRLIENLGISADSQ-KQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred --HHHHHHHHhccCCCCc-chhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 1112222222222222 235788889998653 245778899999887666543
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.3e-60 Score=570.40 Aligned_cols=602 Identities=16% Similarity=0.176 Sum_probs=497.8
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...++.++..|++.|++++|..+|++|... + ...+..++.+|.+.|++++|+++|++|...|+.||.++
T Consensus 121 ~~~~n~li~~~~~~g~~~~A~~~f~~m~~~----d-------~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t 189 (857)
T PLN03077 121 VRLGNAMLSMFVRFGELVHAWYVFGKMPER----D-------LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYT 189 (857)
T ss_pred chHHHHHHHHHHhCCChHHHHHHHhcCCCC----C-------eeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhH
Confidence 455567777777777777777777777532 1 12344566788899999999999999999999998766
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCC-CcchHHHHHH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR-ADILFCNFVR 229 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~-~~~~~~~li~ 229 (850)
+..++.+|. ..+++..+.+++..+...|+.+ +...++.++.+|++.|+++.|.++|+.++. +..+|+++|.
T Consensus 190 ----~~~ll~~~~---~~~~~~~~~~~~~~~~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~ 261 (857)
T PLN03077 190 ----FPCVLRTCG---GIPDLARGREVHAHVVRFGFEL-DVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMIS 261 (857)
T ss_pred ----HHHHHHHhC---CccchhhHHHHHHHHHHcCCCc-ccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHH
Confidence 566666654 5688999999999999999876 456789999999999999999999999865 4589999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhc--CChHH
Q 003082 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKF 307 (850)
Q Consensus 230 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~--~~~~~ 307 (850)
+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.|+++.|.+++..|.+.|+.||..+||+||.+++ |++++
T Consensus 262 ~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 341 (857)
T PLN03077 262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999865 79999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 003082 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387 (850)
Q Consensus 308 a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~ 387 (850)
|.++|++|. .||..+||++|.+|++.|++++|.++|++|.+ .| +.||..||+.++.+|++.|++++|.++++
T Consensus 342 A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~---~g-~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~ 413 (857)
T PLN03077 342 AEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQ---DN-VSPDEITIASVLSACACLGDLDVGVKLHE 413 (857)
T ss_pred HHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH---hC-CCCCceeHHHHHHHHhccchHHHHHHHHH
Confidence 999999996 47999999999999999999999999999986 45 89999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccccc
Q 003082 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467 (850)
Q Consensus 388 ~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~ 467 (850)
.|.+.|+.|+..+|++||++|++.|++++|.++|++|. .+|..+|+++|.+|++.|+.++|.++|++|... ..++
T Consensus 414 ~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~-~~pd 488 (857)
T PLN03077 414 LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPN 488 (857)
T ss_pred HHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC-CCCC
Confidence 99999999999999999999999999999999999996 578899999999999999999999999999753 3332
Q ss_pred ccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhc--cHHHHHHHHHHHHHcCCC
Q 003082 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLS 545 (850)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~--~~~~a~~l~~~m~~~g~~ 545 (850)
.... ..+...+ ...........+...+.+.|+.+|..++|++|++|++ +.++|..+|+.+ .
T Consensus 489 ~~t~--------~~lL~a~----~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~ 551 (857)
T PLN03077 489 SVTL--------IAALSAC----ARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----E 551 (857)
T ss_pred HhHH--------HHHHHHH----hhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----C
Confidence 1100 0000000 0001111123344556778999999999999999974 789999999987 5
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHH
Q 003082 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK-HYQIQPNLVTYITL 624 (850)
Q Consensus 546 p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~-~~g~~p~~~t~~~l 624 (850)
||..+||+||.+|++.|+.++|.++|++|.+.|+.||.+||+.+|.+|++.|++++|.++|++|. +.|+.|+..+|+++
T Consensus 552 ~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l 631 (857)
T PLN03077 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631 (857)
T ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999 68999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhh-hhhhhhhcccchhhhhhcCCCchhHHHHHHHHHH
Q 003082 625 LRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCEG-VIQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVH 703 (850)
Q Consensus 625 i~a~~~~g~~~~a~~a~~l~~~M~~~g~~p~~~~~~~li~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 703 (850)
+++|++.|++++ |.+++++| .++||..+|++|+.++... ....+......+......+. ..+.++..
T Consensus 632 v~~l~r~G~~~e---A~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~-~~y~ll~n----- 699 (857)
T PLN03077 632 VDLLGRAGKLTE---AYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSV-GYYILLCN----- 699 (857)
T ss_pred HHHHHhCCCHHH---HHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc-chHHHHHH-----
Confidence 999999999888 66788888 5899999999999987653 22222111111111111111 11111111
Q ss_pred HhhhhhhhHHHHhhccchhHHHHHHHHHHHHHHhhhhcCCC
Q 003082 704 LQKSAAENLAIDLRGLTKVEARIIVLAVLRMMKENYSLGVP 744 (850)
Q Consensus 704 ~~~~~~~~~~~~l~~~~~~~a~~~~~~~l~~~~~~~~~~~~ 744 (850)
......+.+....++..+++..-+..+|.+
T Consensus 700 -----------~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s 729 (857)
T PLN03077 700 -----------LYADAGKWDEVARVRKTMRENGLTVDPGCS 729 (857)
T ss_pred -----------HHHHCCChHHHHHHHHHHHHcCCCCCCCcc
Confidence 112223555677778888887777777765
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.6e-58 Score=536.85 Aligned_cols=449 Identities=17% Similarity=0.236 Sum_probs=327.6
Q ss_pred HHHHHhhhcCchhHHHHHHHHHHHcC-CCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHH
Q 003082 118 SGIVKSIREGRIDCVVGVLKKLNELG-VAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFR 196 (850)
Q Consensus 118 ~~~~~~~~~g~~~~A~~~l~~~~~~~-~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 196 (850)
..+..+.+.|++++|+++|+.|...+ ..|+.. +++.++.+|. +.++.+.|.+++..|.+.|+.|+.
T Consensus 92 ~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~----t~~~ll~a~~---~~~~~~~a~~l~~~m~~~g~~~~~------ 158 (697)
T PLN03081 92 SQIEKLVACGRHREALELFEILEAGCPFTLPAS----TYDALVEACI---ALKSIRCVKAVYWHVESSGFEPDQ------ 158 (697)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHH----HHHHHHHHHH---hCCCHHHHHHHHHHHHHhCCCcch------
Confidence 33445556777777777777776543 455443 3555555544 457788888888888877765532
Q ss_pred HHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003082 197 IVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276 (850)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 276 (850)
.+|+.|+.+|++.|++++|.++|++|.+ ||..+||++|.+|++.|++++|+
T Consensus 159 -------------------------~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~ 209 (697)
T PLN03081 159 -------------------------YMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAF 209 (697)
T ss_pred -------------------------HHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHH
Confidence 5677777777777777777777777753 67777777777777777777777
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHhhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 003082 277 AIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354 (850)
Q Consensus 277 ~~~~~m~~~g~~pd~~t~~~ll~~~~--~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~ 354 (850)
++|++|.+.|+.||..||++++.+++ +..+.+.+++..+.+.|+.||..+||+||++|++.|++++|.++|++|.
T Consensus 210 ~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--- 286 (697)
T PLN03081 210 ALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP--- 286 (697)
T ss_pred HHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---
Confidence 77777777777777777777777655 4667777777777777777777777777777777777777777777764
Q ss_pred hcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 003082 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434 (850)
Q Consensus 355 ~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 434 (850)
.+|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|++++|.+++.+|.+.|+.||..
T Consensus 287 -----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~ 361 (697)
T PLN03081 287 -----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV 361 (697)
T ss_pred -----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCee
Confidence 357777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcC
Q 003082 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514 (850)
Q Consensus 435 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 514 (850)
+|++|+++|++.|++++|.++|++|. .||
T Consensus 362 ~~~~Li~~y~k~G~~~~A~~vf~~m~---------------------------------------------------~~d 390 (697)
T PLN03081 362 ANTALVDLYSKWGRMEDARNVFDRMP---------------------------------------------------RKN 390 (697)
T ss_pred ehHHHHHHHHHCCCHHHHHHHHHhCC---------------------------------------------------CCC
Confidence 77777777777777777777777663 467
Q ss_pred HHHHHHHHHHHhc--cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHH
Q 003082 515 TTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRE-DGMSPDVVAYTTAIK 591 (850)
Q Consensus 515 ~~t~~~li~~~~~--~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd~~ty~~li~ 591 (850)
..+||++|.+|++ +.++|.++|++|.+.|+.||..||+++|.+|++.|.+++|.++|+.|.+ .|+.|+..+|+++|+
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 7777777777774 5677777777777777777777777777777777777777777777765 577777777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh-h
Q 003082 592 VCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKAN-DTYLKELIEEWCE-G 669 (850)
Q Consensus 592 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~~g~~p~-~~~~~~li~~~~~-~ 669 (850)
+|++.|++++|.+++++| ++.|+..+|++|+.+|+..|+++.+++ ++++|. ++.|+ ..+|..|++.|++ |
T Consensus 471 ~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~---~~~~l~--~~~p~~~~~y~~L~~~y~~~G 542 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRL---AAEKLY--GMGPEKLNNYVVLLNLYNSSG 542 (697)
T ss_pred HHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHH---HHHHHh--CCCCCCCcchHHHHHHHHhCC
Confidence 777777777777777665 567777777777777777777766433 455554 44454 4567777777776 4
Q ss_pred hhhhhh
Q 003082 670 VIQDKN 675 (850)
Q Consensus 670 ~~~~~~ 675 (850)
.+.++.
T Consensus 543 ~~~~A~ 548 (697)
T PLN03081 543 RQAEAA 548 (697)
T ss_pred CHHHHH
Confidence 444443
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-54 Score=510.12 Aligned_cols=460 Identities=17% Similarity=0.278 Sum_probs=409.3
Q ss_pred HHHhhhhcCcHHHHHHHHHHHHhCC-CCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHH
Q 003082 161 ECQRLLDSGEVEMFVGLMEVLEEFR-LPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVS 239 (850)
Q Consensus 161 ~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~ 239 (850)
....+.+.|++++|+++|+.|...+ +.| +..+|+.++.+|++.++++.
T Consensus 93 ~i~~l~~~g~~~~Al~~f~~m~~~~~~~~-------------------------------~~~t~~~ll~a~~~~~~~~~ 141 (697)
T PLN03081 93 QIEKLVACGRHREALELFEILEAGCPFTL-------------------------------PASTYDALVEACIALKSIRC 141 (697)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCC-------------------------------CHHHHHHHHHHHHhCCCHHH
Confidence 3445566778888888887776543 222 33789999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhc--CChHHHHHHHHHHHH
Q 003082 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQK 317 (850)
Q Consensus 240 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~--~~~~~a~~l~~~m~~ 317 (850)
|.+++..|.+.|+.||..+||.|+++|+++|++++|.++|++|. .||..+||++|.+++ |++++|+++|++|.+
T Consensus 142 a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~ 217 (697)
T PLN03081 142 VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWE 217 (697)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999997 589999999999865 699999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003082 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397 (850)
Q Consensus 318 ~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 397 (850)
.|+.||..||+.++.+|++.|+.+.+.+++..+.+ .| +.+|..+||+||++|++.|++++|.++|++|. .+|
T Consensus 218 ~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~---~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~ 289 (697)
T PLN03081 218 DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK---TG-VVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKT 289 (697)
T ss_pred hCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHH---hC-CCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCC
Confidence 99999999999999999999999999999999886 45 78999999999999999999999999999995 569
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchh
Q 003082 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD 477 (850)
Q Consensus 398 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~ 477 (850)
.++||+||.+|++.|++++|.++|++|.+.|+.||..||++++.+|++.|++++|.+++..|.+.+
T Consensus 290 ~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g-------------- 355 (697)
T PLN03081 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG-------------- 355 (697)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC--------------
Confidence 999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred hhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhc--cHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003082 478 RISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILI 555 (850)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~--~~~~a~~l~~~m~~~g~~p~~~ty~~li 555 (850)
+.||..+||++|++|++ +.++|.++|++|.+ ||..+||+||
T Consensus 356 ---------------------------------~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI 398 (697)
T PLN03081 356 ---------------------------------FPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALI 398 (697)
T ss_pred ---------------------------------CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHH
Confidence 68999999999999984 78999999999964 7999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCh
Q 003082 556 DACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH-YQIQPNLVTYITLLRARSRYGSL 634 (850)
Q Consensus 556 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~li~a~~~~g~~ 634 (850)
.+|++.|+.++|.++|++|.+.|+.||.+||+++|.+|++.|++++|.++|+.|.+ .|+.|+..+|++++++|++.|++
T Consensus 399 ~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~ 478 (697)
T PLN03081 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLL 478 (697)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCH
Confidence 99999999999999999999999999999999999999999999999999999986 79999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-hhhhhhhhcccchhhhhhcCCCchhHHHHHHHHHHHhhhhhhhHH
Q 003082 635 HEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE-GVIQDKNQNQGEVTLCRRTNSQRPQSLLLEKVAVHLQKSAAENLA 713 (850)
Q Consensus 635 ~~a~~a~~l~~~M~~~g~~p~~~~~~~li~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 713 (850)
++ |.++|++| ++.||..+|++|+.+++. +.+..+.. +.+++ ..+.+.....|.
T Consensus 479 ~e---A~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~-------------------~~~~l-~~~~p~~~~~y~ 532 (697)
T PLN03081 479 DE---AYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRL-------------------AAEKL-YGMGPEKLNNYV 532 (697)
T ss_pred HH---HHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHH-------------------HHHHH-hCCCCCCCcchH
Confidence 88 55676655 899999999999999986 32222111 11111 123344445788
Q ss_pred HHhhccchhHHHHHHHHHHHHHHhhhh
Q 003082 714 IDLRGLTKVEARIIVLAVLRMMKENYS 740 (850)
Q Consensus 714 ~~l~~~~~~~a~~~~~~~l~~~~~~~~ 740 (850)
+.++.+++.+....+..++++|++++.
T Consensus 533 ~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 533 VLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 888999998889999999999998853
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=2.5e-26 Score=282.70 Aligned_cols=548 Identities=12% Similarity=0.044 Sum_probs=321.6
Q ss_pred ccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHH
Q 003082 62 TVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (850)
Q Consensus 62 ~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~ 141 (850)
.+...|+. ...+..++..+...|++++|+..++.+.... |..... +......+...|++++|...|+++.+
T Consensus 321 ~~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~------~~~l~~~~~~~g~~~~A~~~~~~~~~ 391 (899)
T TIGR02917 321 ILKYAPNS-HQARRLLASIQLRLGRVDEAIATLSPALGLD--PDDPAA------LSLLGEAYLALGDFEKAAEYLAKATE 391 (899)
T ss_pred HHHhCCCC-hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHH------HHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34445554 5566667777777777777777777776653 222111 11222344566777777777777763
Q ss_pred cCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----
Q 003082 142 LGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV---- 217 (850)
Q Consensus 142 ~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---- 217 (850)
..|+. ...+...+..+...|++++|++.++.+.... |+.......++..+.+.|++++|+..++.+
T Consensus 392 --~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 461 (899)
T TIGR02917 392 --LDPEN------AAARTQLGISKLSQGDPSEAIADLETAAQLD--PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ 461 (899)
T ss_pred --cCCCC------HHHHHHHHHHHHhCCChHHHHHHHHHHHhhC--CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 34443 2233334444556667777777666665543 444444555566666666666666665443
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHH
Q 003082 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (850)
Q Consensus 218 p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 297 (850)
|.+..++..++..|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+.+.+.+ +.+..++..+
T Consensus 462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 539 (899)
T TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILAL 539 (899)
T ss_pred CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 4444556666666666666666666666666532 1344455566666666666666666666665542 1234444444
Q ss_pred HHhh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHh
Q 003082 298 MNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375 (850)
Q Consensus 298 l~~~--~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~ 375 (850)
...+ .|+.++|...|+++.+.+ +.+...+..+...|.+.|++++|..+++.+.+. .+.+..+|..+...|..
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~ 613 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA-----APDSPEAWLMLGRAQLA 613 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHH
Confidence 4432 356666666666665543 334555556666666666666666666665541 23345566666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 003082 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455 (850)
Q Consensus 376 ~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l 455 (850)
.|++++|...|+++.+... .+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+.+.|++++|.++
T Consensus 614 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 691 (899)
T TIGR02917 614 AGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKI 691 (899)
T ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666666655432 245556666666666666666666666665542 33455566666666666666666666
Q ss_pred HHHHhhccccccccC-------ccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHh--
Q 003082 456 FRSWTLSKTQVALGE-------DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC-- 526 (850)
Q Consensus 456 ~~~m~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~-- 526 (850)
++.+........... ...+....+..... ......|+..++..+...+.
T Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~----------------------~~~~~~~~~~~~~~l~~~~~~~ 749 (899)
T TIGR02917 692 AKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYR----------------------KALKRAPSSQNAIKLHRALLAS 749 (899)
T ss_pred HHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHH----------------------HHHhhCCCchHHHHHHHHHHHC
Confidence 666554321100000 00000000000000 00012344445555555554
Q ss_pred ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003082 527 TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLF 606 (850)
Q Consensus 527 ~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~ 606 (850)
++.++|.+.+..+.+.. +.+...+..+...|.+.|+.++|..+|+++.+.. +.+...++.+...+.+.|+ .+|++++
T Consensus 750 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~ 826 (899)
T TIGR02917 750 GNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYA 826 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHH
Confidence 46777888887777653 3466777788888888888888888888887754 4567778888888888888 7788888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003082 607 EEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE 668 (850)
Q Consensus 607 ~~m~~~g~~p~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~~g~~p~~~~~~~li~~~~~ 668 (850)
+++.+.. .-+..++..+...+...|++++ |+++|+++.+.+.. +..++..+...+++
T Consensus 827 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~---A~~~~~~a~~~~~~-~~~~~~~l~~~~~~ 883 (899)
T TIGR02917 827 EKALKLA-PNIPAILDTLGWLLVEKGEADR---ALPLLRKAVNIAPE-AAAIRYHLALALLA 883 (899)
T ss_pred HHHHhhC-CCCcHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhCCC-ChHHHHHHHHHHHH
Confidence 8877632 2245666677777778888766 66688888876654 67777777777776
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=4.8e-26 Score=280.25 Aligned_cols=530 Identities=13% Similarity=0.027 Sum_probs=390.3
Q ss_pred ccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHH
Q 003082 62 TVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (850)
Q Consensus 62 ~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~ 141 (850)
.+..+|.. ...+..++..+...|++++|...|+++.+. .|....... .++. .+...|++++|++.|+++.+
T Consensus 355 ~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~---~l~~---~~~~~~~~~~A~~~~~~a~~ 425 (899)
T TIGR02917 355 ALGLDPDD-PAALSLLGEAYLALGDFEKAAEYLAKATEL--DPENAAART---QLGI---SKLSQGDPSEAIADLETAAQ 425 (899)
T ss_pred HHhcCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHH---HHHH---HHHhCCChHHHHHHHHHHHh
Confidence 44555655 778888999999999999999999999887 343332222 2222 23477889999999988884
Q ss_pred cCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----
Q 003082 142 LGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV---- 217 (850)
Q Consensus 142 ~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---- 217 (850)
..|+.. ......+..+.+.|++++|+.+++.+.... |+....+..++..+...|++++|+.+|..+
T Consensus 426 --~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 495 (899)
T TIGR02917 426 --LDPELG------RADLLLILSYLRSGQFDKALAAAKKLEKKQ--PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE 495 (899)
T ss_pred --hCCcch------hhHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Confidence 345431 222233445667888888888888887654 666677888888888888888888887653
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHH
Q 003082 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (850)
Q Consensus 218 p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 297 (850)
|.+...+..++..+...|++++|.+.|+.+.+..+ .+..++..+...+.+.|++++|...|+++.+.+ +.+...+..+
T Consensus 496 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 573 (899)
T TIGR02917 496 PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALAL 573 (899)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHH
Confidence 66667777888888888888888888888887542 467778888888888888888888888887653 2334455555
Q ss_pred HHhh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHh
Q 003082 298 MNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375 (850)
Q Consensus 298 l~~~--~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~ 375 (850)
...+ .|+++.|.++++.+.+.. +.+..+|..+...|...|++++|...|+.+.+. .+.+...+..+...|..
T Consensus 574 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~ 647 (899)
T TIGR02917 574 AQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL-----QPDSALALLLLADAYAV 647 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHH
Confidence 5543 468888888888887643 556778888888888888888888888888763 23356677788888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 003082 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455 (850)
Q Consensus 376 ~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l 455 (850)
.|++++|..+|+++.+... .+..++..++..+...|++++|..+++.+.+.. +.+...+..+...+.+.|++++|.+.
T Consensus 648 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~ 725 (899)
T TIGR02917 648 MKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQA 725 (899)
T ss_pred cCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 8888888888888876542 357788888888888888888888888887764 45667777788888888888888888
Q ss_pred HHHHhhccccccccC------ccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHh--c
Q 003082 456 FRSWTLSKTQVALGE------DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--T 527 (850)
Q Consensus 456 ~~~m~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~--~ 527 (850)
|+.+........... ...|....+...... .+. ..+.+...+..+...|. +
T Consensus 726 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------------------~l~--~~~~~~~~~~~la~~~~~~g 784 (899)
T TIGR02917 726 YRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEA-------------------WLK--THPNDAVLRTALAELYLAQK 784 (899)
T ss_pred HHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHH-------------------HHH--hCCCCHHHHHHHHHHHHHCc
Confidence 888765442210000 001111111100000 000 12456677777777776 5
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003082 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFE 607 (850)
Q Consensus 528 ~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~ 607 (850)
+.++|..+|+++.+.. +.+..+++.+...+.+.|+ .+|+.+++++.+.. +-+..++..+...+...|++++|.++|+
T Consensus 785 ~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 861 (899)
T TIGR02917 785 DYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLR 861 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7899999999999864 3578899999999999999 88999999998753 3356678889999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 003082 608 EMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMW 648 (850)
Q Consensus 608 ~m~~~g~~p~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~ 648 (850)
++.+.+. .+..++..+..++.+.|+.++ |.+++++|.
T Consensus 862 ~a~~~~~-~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~ 898 (899)
T TIGR02917 862 KAVNIAP-EAAAIRYHLALALLATGRKAE---ARKELDKLL 898 (899)
T ss_pred HHHhhCC-CChHHHHHHHHHHHHcCCHHH---HHHHHHHHh
Confidence 9998664 389999999999999999888 666788775
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=1.3e-18 Score=215.15 Aligned_cols=554 Identities=12% Similarity=0.058 Sum_probs=332.7
Q ss_pred hccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHH----------HHHHHHHhhhcCchh
Q 003082 61 STVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEM----------VASGIVKSIREGRID 130 (850)
Q Consensus 61 ~~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~----------~~~~~~~~~~~g~~~ 130 (850)
+.+..+|++ +.++..++..+...|++++|...+++..+.. |........... .......+...|+++
T Consensus 53 kl~~~~p~~-p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~ 129 (1157)
T PRK11447 53 RLELIDPNN-PDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTE 129 (1157)
T ss_pred HHHccCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHH
Confidence 355788888 8889999999999999999999999999984 443222110000 011123456889999
Q ss_pred HHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHH
Q 003082 131 CVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLA 210 (850)
Q Consensus 131 ~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 210 (850)
+|+..|+++.+ ..|.... .... +.... ....|++++|+..++++.+.. |++......++..+...|++++|
T Consensus 130 eA~~~~~~~l~--~~p~~~~--la~~-y~~~~--~~~~g~~~~A~~~L~~ll~~~--P~~~~~~~~LA~ll~~~g~~~eA 200 (1157)
T PRK11447 130 EALASYDKLFN--GAPPELD--LAVE-YWRLV--AKLPAQRPEAINQLQRLNADY--PGNTGLRNTLALLLFSSGRRDEG 200 (1157)
T ss_pred HHHHHHHHHcc--CCCCChH--HHHH-HHHHH--hhCCccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHccCCHHHH
Confidence 99999999984 3454321 1111 22111 224699999999999999876 88888888999999999999999
Q ss_pred HHHhhhCCCC--------------------------------------cch------H--------------HHHHHHHH
Q 003082 211 IRYACIVPRA--------------------------------------DIL------F--------------CNFVREFG 232 (850)
Q Consensus 211 ~~~~~~~p~~--------------------------------------~~~------~--------------~~li~~~~ 232 (850)
+..++.+... ... + ..+...+.
T Consensus 201 l~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~ 280 (1157)
T PRK11447 201 FAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAV 280 (1157)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 9887653110 000 0 01245677
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-cCHHHHHHHHH------------
Q 003082 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNIYVFNSLMN------------ 299 (850)
Q Consensus 233 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd~~t~~~ll~------------ 299 (850)
..|++++|+..|++.++..+ .+..++..+..+|.+.|++++|+..|++..+.... ++...|..++.
T Consensus 281 ~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence 88999999999999988532 37788999999999999999999999999876432 12222222221
Q ss_pred --hhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccC-HhHHHHHHHHH---
Q 003082 300 --VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVF--- 373 (850)
Q Consensus 300 --~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d-~~ty~~li~~~--- 373 (850)
...+++++|.+.|++..... +.+...+..|...+...|++++|.+.|+++.+. .|+ ...+..+...|
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~------~p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRM------DPGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhc
Confidence 23579999999999998864 446677888999999999999999999998873 233 33444444333
Q ss_pred ---------------------------------------HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 003082 374 ---------------------------------------ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414 (850)
Q Consensus 374 ---------------------------------------~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 414 (850)
...|++++|...|++.++.... +...+..+...|.+.|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCH
Confidence 3344555555555554443222 333444444455555555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcc--cccC
Q 003082 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ--SITN 492 (850)
Q Consensus 415 ~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 492 (850)
++|...|+++.+.. +.+...+..+...+.+.++.++|...++.+........ +..+...... ....
T Consensus 512 ~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~-----------~~~l~~~l~~~~~l~~ 579 (1157)
T PRK11447 512 SQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSN-----------IQELAQRLQSDQVLET 579 (1157)
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChh-----------HHHHHHHHhhhHHHHH
Confidence 55555555544321 11222222222233444555555554443321110000 0000000000 0000
Q ss_pred CCCCcCCCcc---cccccccCCCcCHHHHHHHHHHHh--ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHH
Q 003082 493 TPNFVPNSHY---SSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567 (850)
Q Consensus 493 ~~~~~~~~~~---~~~~~~~~~~p~~~t~~~li~~~~--~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A 567 (850)
.......... ...+.. .+.+...+..+-..+. ++.++|...|+...+... .+...+..+...|...|+.++|
T Consensus 580 a~~l~~~G~~~eA~~~l~~--~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA 656 (1157)
T PRK11447 580 ANRLRDSGKEAEAEALLRQ--QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAA 656 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence 0000000000 000111 1223333333333333 467788888887777421 2566777788888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHhcCChHHHHHHHH
Q 003082 568 LQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQI--QP---NLVTYITLLRARSRYGSLHEVQQCLA 642 (850)
Q Consensus 568 ~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p---~~~t~~~li~a~~~~g~~~~a~~a~~ 642 (850)
++.++...+.. +.+..++..+..++...|++++|.++|+++....- .| +...+..+...+...|+.++ |+.
T Consensus 657 ~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~---A~~ 732 (1157)
T PRK11447 657 RAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQ---ALE 732 (1157)
T ss_pred HHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHH---HHH
Confidence 88888776532 22445566677777788888888888888775321 12 22455555666777788766 445
Q ss_pred HHHHHH-HcCCCC
Q 003082 643 VYQDMW-KAGYKA 654 (850)
Q Consensus 643 l~~~M~-~~g~~p 654 (850)
.|++.. ..|+.|
T Consensus 733 ~y~~Al~~~~~~~ 745 (1157)
T PRK11447 733 TYKDAMVASGITP 745 (1157)
T ss_pred HHHHHHhhcCCCC
Confidence 555554 345543
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.88 E-value=1.1e-17 Score=206.82 Aligned_cols=481 Identities=12% Similarity=0.050 Sum_probs=301.7
Q ss_pred ccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhh-Hhhh-----------hHHHHHH------------
Q 003082 62 TVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSK-FASM-----------LSLEMVA------------ 117 (850)
Q Consensus 62 ~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~-~~~~-----------~~~~~~~------------ 117 (850)
.+..+|+. ..++..++..+...|++++|+..++++......... .... .....+.
T Consensus 173 ll~~~P~~-~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~ 251 (1157)
T PRK11447 173 LNADYPGN-TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSV 251 (1157)
T ss_pred HHHhCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHH
Confidence 44667777 778889999999999999999999998654211000 0000 0000000
Q ss_pred ----------------------HHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHH
Q 003082 118 ----------------------SGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFV 175 (850)
Q Consensus 118 ----------------------~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~ 175 (850)
.....+...|++++|+..|+++++ ..|+. .+++..++..+...|++++|+
T Consensus 252 ~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~--~~P~~------~~a~~~Lg~~~~~~g~~~eA~ 323 (1157)
T PRK11447 252 AAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVR--ANPKD------SEALGALGQAYSQQGDRARAV 323 (1157)
T ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCC------HHHHHHHHHHHHHcCCHHHHH
Confidence 001234456777777777777763 35543 334445555566667777777
Q ss_pred HHHHHHHhCCCCCCCcc--cH------------HHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCh
Q 003082 176 GLMEVLEEFRLPVKELD--EE------------FRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDL 237 (850)
Q Consensus 176 ~~~~~~~~~~~~~~~~~--~~------------~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~ 237 (850)
..|++.++.. |+... .| ...+..+...|++++|+..|+.+ |.+..++..+...|...|++
T Consensus 324 ~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~ 401 (1157)
T PRK11447 324 AQFEKALALD--PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDY 401 (1157)
T ss_pred HHHHHHHHhC--CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 7777766543 32211 01 12244556677777777766553 55555666677777777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc--------CHHHHHHHHH--hhcCChHH
Q 003082 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL--------NIYVFNSLMN--VNAHDLKF 307 (850)
Q Consensus 238 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--------d~~t~~~ll~--~~~~~~~~ 307 (850)
++|++.|++.++..+ .+...+..+...|. .++.++|+.+++.+....... ....+..+-. ...+++++
T Consensus 402 ~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~e 479 (1157)
T PRK11447 402 AAAERYYQQALRMDP-GNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQ 479 (1157)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHH
Confidence 777777777666422 23445555555553 345677766665543221000 0001111111 12467788
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 003082 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387 (850)
Q Consensus 308 a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~ 387 (850)
|++.|++..+.. +-+...+..+...|.+.|++++|...|+++.+. .+.+...+..+...+...++.++|+..++
T Consensus 480 A~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~-----~P~~~~~~~a~al~l~~~~~~~~Al~~l~ 553 (1157)
T PRK11447 480 AAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ-----KPNDPEQVYAYGLYLSGSDRDRAALAHLN 553 (1157)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 888888877654 234566667777888888888888888877652 12233344444445667788888888777
Q ss_pred HHHHCCCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003082 388 DMLSAGVTPNTI---------TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (850)
Q Consensus 388 ~m~~~g~~p~~~---------ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~ 458 (850)
.+......++.. .+..+...+...|+.++|..+++. .+.+...+..+...+.+.|++++|.+.|+.
T Consensus 554 ~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~ 628 (1157)
T PRK11447 554 TLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQR 628 (1157)
T ss_pred hCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 654322222211 123455667788888888888762 245556677788888889999999999888
Q ss_pred HhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHh--ccHHHHHHHH
Q 003082 459 WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALM 536 (850)
Q Consensus 459 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~--~~~~~a~~l~ 536 (850)
..... +.+...+..+...+. ++.++|.+.+
T Consensus 629 al~~~------------------------------------------------P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 629 VLTRE------------------------------------------------PGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred HHHhC------------------------------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 76532 335666777777765 5789999999
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003082 537 NEMRTVGLSP-NHISWTILIDACGGSGNVEGALQILKIMREDGM--SP---DVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (850)
Q Consensus 537 ~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p---d~~ty~~li~~~~~~g~~~~A~~l~~~m~ 610 (850)
+...+. .| +..++..+...+...|++++|.++++++....- .| +...+..+...+...|++++|...|++..
T Consensus 661 ~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 661 AKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 987764 34 455677788899999999999999999987432 22 23566677888999999999999999886
Q ss_pred H-CCCCC
Q 003082 611 H-YQIQP 616 (850)
Q Consensus 611 ~-~g~~p 616 (850)
. .|+.|
T Consensus 739 ~~~~~~~ 745 (1157)
T PRK11447 739 VASGITP 745 (1157)
T ss_pred hhcCCCC
Confidence 4 45544
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=4.2e-19 Score=184.56 Aligned_cols=369 Identities=13% Similarity=0.114 Sum_probs=312.0
Q ss_pred hhccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHH
Q 003082 60 LSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKL 139 (850)
Q Consensus 60 l~~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~ 139 (850)
+.+++..|.- .+.|..+++.+-..|++++|+.+|+.+++. +|.. .+.+.+...++..+|+.+.|...|.++
T Consensus 106 ~~a~r~~~q~-ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~f------ida~inla~al~~~~~~~~a~~~~~~a 176 (966)
T KOG4626|consen 106 LLAIRKNPQG-AEAYSNLANILKERGQLQDALALYRAAIEL--KPKF------IDAYINLAAALVTQGDLELAVQCFFEA 176 (966)
T ss_pred hhhhhccchH-HHHHHHHHHHHHHhchHHHHHHHHHHHHhc--Cchh------hHHHhhHHHHHHhcCCCcccHHHHHHH
Confidence 3466777776 899999999999999999999999999998 5543 334455666788999999999999999
Q ss_pred HHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC--
Q 003082 140 NELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV-- 217 (850)
Q Consensus 140 ~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-- 217 (850)
+ .+.|+. +.+..+....+...|+.+||...|.+.++.. |.-...|+.++-.+-.+|+...|+..|+.+
T Consensus 177 l--qlnP~l------~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk 246 (966)
T KOG4626|consen 177 L--QLNPDL------YCARSDLGNLLKAEGRLEEAKACYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK 246 (966)
T ss_pred H--hcCcch------hhhhcchhHHHHhhcccchhHHHHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhc
Confidence 9 668875 4444444555667899999999998877644 777889999999999999999999999875
Q ss_pred --CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC-HHH
Q 003082 218 --PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-IYV 293 (850)
Q Consensus 218 --p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t 293 (850)
|....+|.+|+..|-..+.++.|+..|.+.... .| ...+|..|.-.|-.+|.++-|+..|++..+. +|+ ...
T Consensus 247 ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~A 322 (966)
T KOG4626|consen 247 LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDA 322 (966)
T ss_pred CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHH
Confidence 777799999999999999999999999998874 45 4567889999999999999999999998876 555 467
Q ss_pred HHHHHHhh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccC-HhHHHHHH
Q 003082 294 FNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIV 370 (850)
Q Consensus 294 ~~~ll~~~--~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d-~~ty~~li 370 (850)
||.|-++. .|++.+|.+.|.+.+... +--....+.|...|...|.+++|..+|..... +.|. ...+|.|.
T Consensus 323 y~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~------v~p~~aaa~nNLa 395 (966)
T KOG4626|consen 323 YNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALE------VFPEFAAAHNNLA 395 (966)
T ss_pred HhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHh------hChhhhhhhhhHH
Confidence 88888775 379999999999998763 33466888999999999999999999998876 4555 45789999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHhCC
Q 003082 371 KVFADAKWWQMALKVKEDMLSAGVTPN-TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN-SQCCNILLQACVEACQ 448 (850)
Q Consensus 371 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~g~ 448 (850)
..|-+.|++++|+..+++.++ +.|+ ...|+.+...|-..|+++.|.+.+...+.. .|. ...++.|...|-.+|+
T Consensus 396 ~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGn 471 (966)
T KOG4626|consen 396 SIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGN 471 (966)
T ss_pred HHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCC
Confidence 999999999999999999886 5777 568999999999999999999999999875 444 3568899999999999
Q ss_pred HHHHHHHHHHHhhc
Q 003082 449 FDRAFRLFRSWTLS 462 (850)
Q Consensus 449 ~~~A~~l~~~m~~~ 462 (850)
+.+|.+-+++..+.
T Consensus 472 i~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 472 IPEAIQSYRTALKL 485 (966)
T ss_pred cHHHHHHHHHHHcc
Confidence 99999999987653
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=2.8e-18 Score=189.13 Aligned_cols=310 Identities=15% Similarity=0.119 Sum_probs=192.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcC
Q 003082 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH 303 (850)
Q Consensus 224 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~ 303 (850)
.+..+..+...|++++|+..|.++.+.++ .+..++..+...+...|++++|..+++.+...+..++..
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~----------- 105 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ----------- 105 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH-----------
Confidence 33445567788899999999999988632 356688889999999999999999998877642111100
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHH
Q 003082 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (850)
Q Consensus 304 ~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~ 383 (850)
+..++..+...|.+.|++++|..+|+++.+. .+.+..+++.++..+.+.|++++|.
T Consensus 106 -------------------~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~~~~~la~~~~~~g~~~~A~ 161 (389)
T PRK11788 106 -------------------RLLALQELGQDYLKAGLLDRAEELFLQLVDE-----GDFAEGALQQLLEIYQQEKDWQKAI 161 (389)
T ss_pred -------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-----CcchHHHHHHHHHHHHHhchHHHHH
Confidence 1234556666666777777777777766542 2345566677777777777777777
Q ss_pred HHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003082 384 KVKEDMLSAGVTPNT----ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (850)
Q Consensus 384 ~l~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m 459 (850)
+.++.+.+.+..++. ..|..+...+.+.|++++|...|+++.+.. +.+...+..+...|.+.|++++|.++|+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 240 (389)
T PRK11788 162 DVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERV 240 (389)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 777777665544322 234556666677777777777777776643 233455666667777777777777777776
Q ss_pred hhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhccHHHHHHHHHHH
Q 003082 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEM 539 (850)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~a~~l~~~m 539 (850)
...+ |+
T Consensus 241 ~~~~-------------------------------------------------p~------------------------- 246 (389)
T PRK11788 241 EEQD-------------------------------------------------PE------------------------- 246 (389)
T ss_pred HHHC-------------------------------------------------hh-------------------------
Confidence 5321 00
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 003082 540 RTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLV 619 (850)
Q Consensus 540 ~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 619 (850)
....+++.++.+|++.|++++|...++++.+. .|+...+..++..+.+.|++++|.++|+++.+. .|+..
T Consensus 247 ------~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~ 316 (389)
T PRK11788 247 ------YLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLR 316 (389)
T ss_pred ------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHH
Confidence 01234455556666666666666666666553 345445556666666666666666666666543 46666
Q ss_pred HHHHHHHHHHh---cCChHHHHHHHHHHHHHHHcCCCCCHH
Q 003082 620 TYITLLRARSR---YGSLHEVQQCLAVYQDMWKAGYKANDT 657 (850)
Q Consensus 620 t~~~li~a~~~---~g~~~~a~~a~~l~~~M~~~g~~p~~~ 657 (850)
+++.++..+.. .|+.++ ++.+|++|.+.++.|+..
T Consensus 317 ~~~~l~~~~~~~~~~g~~~~---a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 317 GFHRLLDYHLAEAEEGRAKE---SLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHhhhccCCccchh---HHHHHHHHHHHHHhCCCC
Confidence 66666655553 223333 555666666655555544
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.83 E-value=3.1e-17 Score=170.82 Aligned_cols=437 Identities=16% Similarity=0.158 Sum_probs=269.7
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccch
Q 003082 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDG 152 (850)
Q Consensus 73 ~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~ 152 (850)
.-..|+..+-+.|+|++|++.....-.. +|..-..++.+ .. .+....+++.-...-..++ .+.|.
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~--d~t~~~~llll---~a---i~~q~~r~d~s~a~~~~a~--r~~~q----- 114 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQE--DPTNTERLLLL---SA---IFFQGSRLDKSSAGSLLAI--RKNPQ----- 114 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhcc--CCCcccceeee---hh---hhhcccchhhhhhhhhhhh--hccch-----
Confidence 3567888889999999999998877766 44432222211 11 1224445554433322333 23332
Q ss_pred hhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHH
Q 003082 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFV 228 (850)
Q Consensus 153 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li 228 (850)
.-+++.+.+..+...|+..+|+.+++.+++.. |+....|..++.++..+|+...|...|... |...-+.+.+.
T Consensus 115 -~ae~ysn~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lg 191 (966)
T KOG4626|consen 115 -GAEAYSNLANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLG 191 (966)
T ss_pred -HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchh
Confidence 24555555666667888888888888887754 777777777777777777777777765432 43334444566
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC-HHHHHHHHHhh--cCC
Q 003082 229 REFGKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-IYVFNSLMNVN--AHD 304 (850)
Q Consensus 229 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~--~~~ 304 (850)
..+-..|+..+|...|.+.++. .|. .++|+.|.-.+-..|+...|++.|++..+. .|+ ...|-.|=+++ .+.
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARI 267 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhc
Confidence 6666777777777777777664 233 345777777777777777777777776643 222 11222222222 234
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccC-HhHHHHHHHHHHhcCCHHHHH
Q 003082 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQMAL 383 (850)
Q Consensus 305 ~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d-~~ty~~li~~~~~~g~~~~A~ 383 (850)
++.|+..|.+..... +-..+.|..|...|-..|.+|.|.+.|++... +.|+ ...|+.|..++-..|++.+|.
T Consensus 268 ~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~------~~P~F~~Ay~NlanALkd~G~V~ea~ 340 (966)
T KOG4626|consen 268 FDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALE------LQPNFPDAYNNLANALKDKGSVTEAV 340 (966)
T ss_pred chHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHh------cCCCchHHHhHHHHHHHhccchHHHH
Confidence 555555555444321 12244555555556666666666666665554 3333 345666666666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Q 003082 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS-QCCNILLQACVEACQFDRAFRLFRSWTLS 462 (850)
Q Consensus 384 ~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 462 (850)
+.+.+.+..... .....+.|...|...|.+++|..+|....+- .|.- ..++.|...|-+.|++++|..-+++.
T Consensus 341 ~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykea--- 414 (966)
T KOG4626|consen 341 DCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEA--- 414 (966)
T ss_pred HHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHH---
Confidence 666665554221 3445555666666666666666666655542 2322 34555555666666666665555443
Q ss_pred cccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhccHHHHHHHHHHHHHc
Q 003082 463 KTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTV 542 (850)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~a~~l~~~m~~~ 542 (850)
.+
T Consensus 415 -----------------------------------------------------------------------------lr- 416 (966)
T KOG4626|consen 415 -----------------------------------------------------------------------------LR- 416 (966)
T ss_pred -----------------------------------------------------------------------------Hh-
Confidence 33
Q ss_pred CCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HH
Q 003082 543 GLSPNH-ISWTILIDACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPN-LV 619 (850)
Q Consensus 543 g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ 619 (850)
+.|+. ..|+.+...|-..|+++.|.+.+.+.+.. .|. ...++.|...|-..|++.+|+.-|++... ++|| ..
T Consensus 417 -I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpd 491 (966)
T KOG4626|consen 417 -IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPD 491 (966)
T ss_pred -cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCch
Confidence 45654 47888999999999999999999999874 454 45789999999999999999999999885 5676 34
Q ss_pred HHHHHHHH
Q 003082 620 TYITLLRA 627 (850)
Q Consensus 620 t~~~li~a 627 (850)
.|..++.+
T Consensus 492 A~cNllh~ 499 (966)
T KOG4626|consen 492 AYCNLLHC 499 (966)
T ss_pred hhhHHHHH
Confidence 45445444
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.83 E-value=1.8e-15 Score=178.67 Aligned_cols=495 Identities=9% Similarity=-0.043 Sum_probs=302.3
Q ss_pred ccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHH
Q 003082 62 TVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (850)
Q Consensus 62 ~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~ 141 (850)
++..+|++ ..++..|+..|...|++++|+..+++.++. +|........ ++ .-+++++|...|+++.
T Consensus 70 Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~---La-------~i~~~~kA~~~ye~l~- 135 (987)
T PRK09782 70 IHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERS---LA-------AIPVEVKSVTTVEELL- 135 (987)
T ss_pred HHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH---HH-------HhccChhHHHHHHHHH-
Confidence 67899999 999999999999999999999999999998 5554333222 11 1188999999999999
Q ss_pred cCCCCccccchhhhHHHHHHHHh--------hhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHH
Q 003082 142 LGVAPLELFDGSGFKLLKNECQR--------LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRY 213 (850)
Q Consensus 142 ~~~~p~~~~~~~~~~~l~~~~~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 213 (850)
...|+. .+++..++.. |.+. ++|.+.++ .......|.+.+....+.+.|.+.+++++|+..
T Consensus 136 -~~~P~n------~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 136 -AQQKAC------DAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred -HhCCCC------hhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 457765 2333333332 4333 44444444 222222223333455557778888888888777
Q ss_pred hhhC----CCCcchHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 003082 214 ACIV----PRADILFCNFVREFGK-KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT 288 (850)
Q Consensus 214 ~~~~----p~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 288 (850)
+..+ |.+......|..+|.. .++ +.+..++... ...+...+..+.+.|.+.|+.++|.++++++...-..
T Consensus 205 L~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~ 279 (987)
T PRK09782 205 YNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTT 279 (987)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccC
Confidence 7554 3344445556667776 366 6666665532 2256677777778888888888887777775432111
Q ss_pred -cCHHHHHHHHH--------------------------------------------------------------------
Q 003082 289 -LNIYVFNSLMN-------------------------------------------------------------------- 299 (850)
Q Consensus 289 -pd~~t~~~ll~-------------------------------------------------------------------- 299 (850)
|+..+|.-++.
T Consensus 280 ~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 359 (987)
T PRK09782 280 DAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKA 359 (987)
T ss_pred CCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchh
Confidence 22222211111
Q ss_pred ---------------------------hhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCh---HHHHH--
Q 003082 300 ---------------------------VNAHDLKFTLEVYKNMQKL--GVMADMASYNILLKACCLAGNT---VLAQE-- 345 (850)
Q Consensus 300 ---------------------------~~~~~~~~a~~l~~~m~~~--g~~pd~~t~~~Ll~~~~~~g~~---~~A~~-- 345 (850)
+..|+.++|.++|+..... ...++....+-|+..|.+.+.. ..+..
T Consensus 360 ~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 439 (987)
T PRK09782 360 EALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILS 439 (987)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhc
Confidence 0112222222333222220 0111222333444444444331 11111
Q ss_pred --------------------HHHHHHHhhhcCCccc--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003082 346 --------------------IYGEVKHLEAKGVLKL--DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (850)
Q Consensus 346 --------------------i~~~m~~~~~~g~~~~--d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ 403 (850)
.++...... +.-++ +...|..+..++.. ++.++|...+.+.... .|+......
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al--~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~ 514 (987)
T PRK09782 440 KPLPLAEQRQWQSQLPGIADNCPAIVRLL--GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRA 514 (987)
T ss_pred cccccchhHHHHhhhhhhhhhHHHHHHhc--ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHH
Confidence 111111100 00012 34455555555554 6666777766666544 245443333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhh
Q 003082 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNME 483 (850)
Q Consensus 404 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 483 (850)
+...+...|++++|...|+++... .|+...+..+..++.+.|+.++|...++.....
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------------------- 571 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--------------------- 571 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------------------
Confidence 344445677777777777776543 344444555566667777777777777766532
Q ss_pred hhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHh---ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003082 484 HKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC---TDYYRVKALMNEMRTVGLSPNHISWTILIDACGG 560 (850)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~---~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 560 (850)
.|+.......+.... ++.++|...+++..+ +.|+...|..+...+.+
T Consensus 572 ----------------------------~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~ 621 (987)
T PRK09782 572 ----------------------------GLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQ 621 (987)
T ss_pred ----------------------------CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHH
Confidence 122222111222222 688999999999987 45678889999999999
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHH
Q 003082 561 SGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP-NLVTYITLLRARSRYGSLHEVQQ 639 (850)
Q Consensus 561 ~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~a~~~~g~~~~a~~ 639 (850)
.|+.++|...+++..+.. +-+...++.+..++...|+.++|+..|++..+. .| +...+..+-.++...|++++
T Consensus 622 lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~e--- 695 (987)
T PRK09782 622 RHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAA--- 695 (987)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHH---
Confidence 999999999999998863 335677888888999999999999999999874 45 57788899999999999888
Q ss_pred HHHHHHHHHHc
Q 003082 640 CLAVYQDMWKA 650 (850)
Q Consensus 640 a~~l~~~M~~~ 650 (850)
|...|++..+.
T Consensus 696 A~~~l~~Al~l 706 (987)
T PRK09782 696 TQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHhc
Confidence 55567776653
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=2.1e-17 Score=182.18 Aligned_cols=282 Identities=11% Similarity=0.064 Sum_probs=201.2
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCccc--CHhHHHHHHH
Q 003082 294 FNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL--DVFTYSTIVK 371 (850)
Q Consensus 294 ~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~--d~~ty~~li~ 371 (850)
+..+.....++++.|+..|.++.+.+ +.+..++..+...+...|++++|..+++.+... +...+ ....+..+..
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSR---PDLTREQRLLALQELGQ 115 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHH
Confidence 33444444456666666666666543 234557777777888888888888888777641 10111 1245677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHhC
Q 003082 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS----QCCNILLQACVEAC 447 (850)
Q Consensus 372 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~~~~~ll~~~~~~g 447 (850)
.|...|++++|..+|+++.+.. .++..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence 7788888888888888877653 235667777888888888888888888877765422221 13445555666677
Q ss_pred CHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhc
Q 003082 448 QFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT 527 (850)
Q Consensus 448 ~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~ 527 (850)
++++|...|+++.
T Consensus 195 ~~~~A~~~~~~al------------------------------------------------------------------- 207 (389)
T PRK11788 195 DLDAARALLKKAL------------------------------------------------------------------- 207 (389)
T ss_pred CHHHHHHHHHHHH-------------------------------------------------------------------
Confidence 7777777666543
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003082 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFE 607 (850)
Q Consensus 528 ~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~ 607 (850)
+.. +.+...+..+...|.+.|++++|.++|+++.+.+......+++.++.+|++.|++++|...++
T Consensus 208 -------------~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 208 -------------AAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred -------------hHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 211 123457778889999999999999999999875322224678999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003082 608 EMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE 668 (850)
Q Consensus 608 ~m~~~g~~p~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~~g~~p~~~~~~~li~~~~~ 668 (850)
++.+. .|+...+..+...+.+.|++++ |+.+|+++.+. .|+...++.++..++.
T Consensus 274 ~~~~~--~p~~~~~~~la~~~~~~g~~~~---A~~~l~~~l~~--~P~~~~~~~l~~~~~~ 327 (389)
T PRK11788 274 RALEE--YPGADLLLALAQLLEEQEGPEA---AQALLREQLRR--HPSLRGFHRLLDYHLA 327 (389)
T ss_pred HHHHh--CCCchHHHHHHHHHHHhCCHHH---HHHHHHHHHHh--CcCHHHHHHHHHHhhh
Confidence 99875 5777788999999999999887 67788888765 6999999999988774
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=1.1e-15 Score=177.53 Aligned_cols=435 Identities=11% Similarity=-0.034 Sum_probs=279.8
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+...+..+.+.|+|++|+..|+++++..++|. .+.+....|...|++++|++.+++++ .+.|+.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~---------~~~n~a~~~~~l~~~~~Ai~~~~~al--~l~p~~-- 193 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPV---------YYSNRAACHNALGDWEKVVEDTTAAL--ELDPDY-- 193 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchH---------HHHHHHHHHHHhCCHHHHHHHHHHHH--HcCCCC--
Confidence 34566888899999999999999999998844322 12344456778899999999999999 557765
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~ 230 (850)
..++...+..+...|++++|+..|..+.... +........++..+........+...++..|.....+..+...
T Consensus 194 ----~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~ 267 (615)
T TIGR00990 194 ----SKALNRRANAYDGLGKYADALLDLTASCIID--GFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNY 267 (615)
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence 5667777888889999999999887765443 1111111222222222222344445555555554444444443
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHH---HHhcCCHHHHHHHHHHHHhCC-CCcC-HHHHHHHHHh--hc
Q 003082 231 FGKKRDLVSALRAYDASKKHLSSPNM-YICRTIIDV---CGICGDYMKSRAIYEDLRSQN-VTLN-IYVFNSLMNV--NA 302 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~pd-~~t~~~ll~~--~~ 302 (850)
+ .......+..-++...+. .+.. ..+..+... ....+++++|.+.|+...+.+ ..|+ ...|+.+-.. ..
T Consensus 268 ~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~ 344 (615)
T TIGR00990 268 L-QSFRPKPRPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLK 344 (615)
T ss_pred H-HHccCCcchhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc
Confidence 3 222222222222221111 1111 111111111 123468899999999888764 2343 2333333232 35
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHH
Q 003082 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (850)
Q Consensus 303 ~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A 382 (850)
|++++|+..|++.++.. +-+...|..+...+...|++++|...|+...+. -+.+..+|..+...+...|++++|
T Consensus 345 g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A 418 (615)
T TIGR00990 345 GKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKL-----NSEDPDIYYHRAQLHFIKGEFAQA 418 (615)
T ss_pred CCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 78888888888877653 223567778888888889999999999888763 133567788888888889999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Q 003082 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (850)
Q Consensus 383 ~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 462 (850)
...|++.++.... +...+..+...+.+.|++++|+..|++.++.. +.+...|+.+...+...|++++|.+.|+.....
T Consensus 419 ~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 419 GKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 9999888876432 56777788888888999999999999887652 345677888888888899999998888876542
Q ss_pred cccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhccHHHHHHHHHHHHHc
Q 003082 463 KTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTV 542 (850)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~a~~l~~~m~~~ 542 (850)
. |+...
T Consensus 497 ~-------------------------------------------------p~~~~------------------------- 502 (615)
T TIGR00990 497 E-------------------------------------------------KETKP------------------------- 502 (615)
T ss_pred C-------------------------------------------------Ccccc-------------------------
Confidence 1 11000
Q ss_pred CCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 543 GLSPNH-ISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (850)
Q Consensus 543 g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 611 (850)
...+. ..++..+..|...|++++|..++++..+.. +.+...+..+...+.+.|++++|.++|++..+
T Consensus 503 -~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 503 -MYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred -ccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 00000 011222223334688888888888877653 22445678888888888888888888888765
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.79 E-value=8.4e-15 Score=170.22 Aligned_cols=416 Identities=11% Similarity=-0.015 Sum_probs=260.6
Q ss_pred HhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHH
Q 003082 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (850)
Q Consensus 122 ~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (850)
.+...|++++|+..|++++ .+.|+. ..+.+.+..+...|++++|++.++..++.. |+....+..++.++
T Consensus 136 ~~~~~~~~~~Ai~~y~~al--~~~p~~-------~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAI--ECKPDP-------VYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAY 204 (615)
T ss_pred HHHHcCCHHHHHHHHHHHH--hcCCch-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHH
Confidence 3458899999999999999 557752 246666777888999999999999988765 77778888889999
Q ss_pred HcCCChHHHHHHhhhC---CCCc-chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003082 202 VNKPDVNLAIRYACIV---PRAD-ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277 (850)
Q Consensus 202 ~~~~~~~~A~~~~~~~---p~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 277 (850)
...|++++|+..|..+ +... .....++..+.. ..+........+... ++...+..+...+ ...+......
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~-~~~~~~~~~~~~~-~~~~~~~~~~ 278 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKP-ENLPSVTFVGNYL-QSFRPKPRPA 278 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCC-CCCCCHHHHHHHH-HHccCCcchh
Confidence 9999999888766432 1111 111111111111 122233333333211 2222222222222 1111111111
Q ss_pred HHHHHHhCCCCcCH---HH--HHHHHHh-hcCChHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003082 278 IYEDLRSQNVTLNI---YV--FNSLMNV-NAHDLKFTLEVYKNMQKLG-VMA-DMASYNILLKACCLAGNTVLAQEIYGE 349 (850)
Q Consensus 278 ~~~~m~~~g~~pd~---~t--~~~ll~~-~~~~~~~a~~l~~~m~~~g-~~p-d~~t~~~Ll~~~~~~g~~~~A~~i~~~ 349 (850)
-+..-.+ ..++. .. +...+.. ..+++++|.+.|+.....+ ..| +...|+.+...+...|++++|...|+.
T Consensus 279 ~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 279 GLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1111111 11110 00 0000111 1246777888888777654 222 345677777777778888888888877
Q ss_pred HHHhhhcCCcccC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003082 350 VKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (850)
Q Consensus 350 m~~~~~~g~~~~d-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 428 (850)
... ..|+ ...|..+...+...|++++|...|++..+.... +..+|..+...+...|++++|...|++.++..
T Consensus 357 al~------l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~ 429 (615)
T TIGR00990 357 SIE------LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429 (615)
T ss_pred HHH------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 765 3344 446777777777788888888888877765422 56677777777778888888888888777653
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccc
Q 003082 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR 508 (850)
Q Consensus 429 ~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (850)
+.+...+..+...+.+.|++++|...|+.....
T Consensus 430 -P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---------------------------------------------- 462 (615)
T TIGR00990 430 -PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN---------------------------------------------- 462 (615)
T ss_pred -ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------------------------------------
Confidence 334555666667777777777777777654321
Q ss_pred cCCCcCHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-----CH
Q 003082 509 FSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSP-----DV 583 (850)
Q Consensus 509 ~~~~p~~~t~~~li~~~~~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----d~ 583 (850)
.+-+...|+.+...|...|++++|...|++..+..-.. +.
T Consensus 463 -----------------------------------~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~ 507 (615)
T TIGR00990 463 -----------------------------------FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNV 507 (615)
T ss_pred -----------------------------------CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccH
Confidence 12245678888899999999999999999988742111 11
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 003082 584 -VAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649 (850)
Q Consensus 584 -~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~ 649 (850)
..++..+..+...|++++|.+++++..... .-+...+..+...+.+.|++++ |++.|++..+
T Consensus 508 ~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~e---Ai~~~e~A~~ 570 (615)
T TIGR00990 508 LPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDE---ALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHH---HHHHHHHHHH
Confidence 122223333445799999999999988753 2345678899999999999888 6667777654
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=1.6e-15 Score=175.49 Aligned_cols=329 Identities=13% Similarity=0.017 Sum_probs=247.7
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
..-...++..+.+.|++++|+.+++..+.. .|.+...+. .........|++++|++.|+++. .+.|+.
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~--~p~~~~~l~------~l~~~~l~~g~~~~A~~~l~~~l--~~~P~~-- 109 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLT--AKNGRDLLR------RWVISPLASSQPDAVLQVVNKLL--AVNVCQ-- 109 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHh--CCCchhHHH------HHhhhHhhcCCHHHHHHHHHHHH--HhCCCC--
Confidence 444566788899999999999999999998 444332211 12233457899999999999999 568876
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCN 226 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~ 226 (850)
...+...+..+...|++++|+..+++.++.. |+....+..++..+...|++++|+..++.+ |.+...+..
T Consensus 110 ----~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~ 183 (656)
T PRK15174 110 ----PEDVLLVASVLLKSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIAT 183 (656)
T ss_pred ----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4456666777888999999999999998764 888888888999999999999999877543 555555555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh--hcCC
Q 003082 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHD 304 (850)
Q Consensus 227 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~--~~~~ 304 (850)
++ .+...|++++|+..++.+.+....++...+..+..++...|++++|...|+...+... .+...+..+-.. ..|+
T Consensus 184 ~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~ 261 (656)
T PRK15174 184 CL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGR 261 (656)
T ss_pred HH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCC
Confidence 43 4788899999999999988764434555556667788899999999999999887632 233444443333 3466
Q ss_pred hHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHH
Q 003082 305 LKF----TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380 (850)
Q Consensus 305 ~~~----a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~ 380 (850)
+++ |...|++..... +.+...+..+...+.+.|++++|...+++..+. -+.+...+..+...|.+.|+++
T Consensus 262 ~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l-----~P~~~~a~~~La~~l~~~G~~~ 335 (656)
T PRK15174 262 SREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT-----HPDLPYVRAMYARALRQVGQYT 335 (656)
T ss_pred chhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHCCCHH
Confidence 664 788888888754 346778888889999999999999999888773 1233556777788888999999
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003082 381 MALKVKEDMLSAGVTPNT-ITWSSLINACANAGLVEQAMHLFEEMLQA 427 (850)
Q Consensus 381 ~A~~l~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 427 (850)
+|...|+.+...+ |+. ..+..+..++...|+.++|...|++..+.
T Consensus 336 eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 336 AASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999888753 343 33444567788899999999999988875
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.78 E-value=2.2e-13 Score=161.20 Aligned_cols=519 Identities=11% Similarity=-0.044 Sum_probs=304.5
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccc
Q 003082 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFD 151 (850)
Q Consensus 72 ~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~ 151 (850)
..+-..+..+...|++++|+..|+++++. +|..... ...+...|...|++++|+..++++. ...|++..+
T Consensus 45 ~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~--dP~n~~~------~~~LA~~yl~~g~~~~A~~~~~kAv--~ldP~n~~~ 114 (987)
T PRK09782 45 YPRLDKALKAQKNNDEATAIREFEYIHQQ--VPDNIPL------TLYLAEAYRHFGHDDRARLLLEDQL--KRHPGDARL 114 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCCHHH------HHHHHHHHHHCCCHHHHHHHHHHHH--hcCcccHHH
Confidence 33444455556669999999999999998 6665222 2345667789999999999999999 557765321
Q ss_pred hhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHH--------HHcCCChHHHHHHhhhCCCC--c
Q 003082 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL--------CVNKPDVNLAIRYACIVPRA--D 221 (850)
Q Consensus 152 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~A~~~~~~~p~~--~ 221 (850)
...+ +..+++++|+..++++.... |++...+..++.. |.+.+...+++. .+..+++ .
T Consensus 115 ---~~~L-------a~i~~~~kA~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~ 181 (987)
T PRK09782 115 ---ERSL-------AAIPVEVKSVTTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEG 181 (987)
T ss_pred ---HHHH-------HHhccChhHHHHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCc
Confidence 1111 12288999999999999876 7777777777776 888888888888 6555544 2
Q ss_pred c-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 003082 222 I-LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI-CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299 (850)
Q Consensus 222 ~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 299 (850)
. ....+...|.+.|+|++|+.++..+.+.++ .+..-...|..+|.. .++ +++..++.. .+.-|...+..+..
T Consensus 182 ~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~ 255 (987)
T PRK09782 182 KTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYAT 255 (987)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHH
Confidence 2 444559999999999999999999999764 345557777778887 477 888888653 22356677777777
Q ss_pred hh--cCChHHHHHHHHHHHHcCCC-CCHHHHH------------------------------HHHHHHHHcCChHHHHHH
Q 003082 300 VN--AHDLKFTLEVYKNMQKLGVM-ADMASYN------------------------------ILLKACCLAGNTVLAQEI 346 (850)
Q Consensus 300 ~~--~~~~~~a~~l~~~m~~~g~~-pd~~t~~------------------------------~Ll~~~~~~g~~~~A~~i 346 (850)
.+ .|+.+.|.++++++...-.. |...++- .++..+.+.++++.++++
T Consensus 256 ~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (987)
T PRK09782 256 ALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL 335 (987)
T ss_pred HHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 54 46888888888776543211 2211111 124444555555544443
Q ss_pred HHH-----HHHhhhcCCc-------------------ccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH-CC-CCCCHHH
Q 003082 347 YGE-----VKHLEAKGVL-------------------KLDVFTYSTIVKVFADAKWWQMALKVKEDMLS-AG-VTPNTIT 400 (850)
Q Consensus 347 ~~~-----m~~~~~~g~~-------------------~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g-~~p~~~t 400 (850)
.+. |......+.. +-+.....-+--...+.|+.++|.++|+.... .+ -.++...
T Consensus 336 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l 415 (987)
T PRK09782 336 LATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTL 415 (987)
T ss_pred hcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHH
Confidence 210 0000000000 00111222222234566667777777666654 11 2234444
Q ss_pred HHHHHHHHHHcCC---HHHHHHH----------------------HHHHHHc-CC-CC--CHHHHHHHHHHHHHhCCHHH
Q 003082 401 WSSLINACANAGL---VEQAMHL----------------------FEEMLQA-GC-EP--NSQCCNILLQACVEACQFDR 451 (850)
Q Consensus 401 y~~li~~~~~~g~---~~~A~~l----------------------~~~m~~~-g~-~p--~~~~~~~ll~~~~~~g~~~~ 451 (850)
..-++..|.+.+. ...+..+ .+..... +. ++ +...|..+..++.. ++.++
T Consensus 416 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~e 494 (987)
T PRK09782 416 MARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGV 494 (987)
T ss_pred HHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHH
Confidence 4445555554443 1222111 1111110 11 12 33444444444443 55555
Q ss_pred HHHHHHHHhhccccccc----cC--ccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHH
Q 003082 452 AFRLFRSWTLSKTQVAL----GE--DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC 525 (850)
Q Consensus 452 A~~l~~~m~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~ 525 (850)
|...+.+.......... .. ...+..+.+..... +.....|+...+..+...+
T Consensus 495 Ai~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~r----------------------ka~~~~p~~~a~~~la~al 552 (987)
T PRK09782 495 ALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQ----------------------KISLHDMSNEDLLAAANTA 552 (987)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHH----------------------HHhccCCCcHHHHHHHHHH
Confidence 55544443322210000 00 00000000000000 0001123333333333333
Q ss_pred h--ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003082 526 C--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAF 603 (850)
Q Consensus 526 ~--~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~ 603 (850)
. ++.++|...++...+.. +.+...+..+...+...|++++|...+++..+. .|+...|..+..++.+.|+.++|.
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~ 629 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAV 629 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3 57788899988888754 223333434444555669999999999998874 577888888999999999999999
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHc
Q 003082 604 SLFEEMKHYQIQP-NLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKA 650 (850)
Q Consensus 604 ~l~~~m~~~g~~p-~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~~ 650 (850)
..|++..+. .| +...++.+-.++...|+.++ |+..|++..+.
T Consensus 630 ~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~ee---Ai~~l~~AL~l 672 (987)
T PRK09782 630 SDLRAALEL--EPNNSNYQAALGYALWDSGDIAQ---SREMLERAHKG 672 (987)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHh
Confidence 999998874 45 46667777778888898777 66677777663
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.77 E-value=7.1e-15 Score=170.16 Aligned_cols=289 Identities=10% Similarity=-0.012 Sum_probs=212.5
Q ss_pred HHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCh
Q 003082 162 CQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDL 237 (850)
Q Consensus 162 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~ 237 (850)
...+...|++++|..+++..+... |+....+..++.+....|++++|+..++.+ |.+..++..+...+.+.|++
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Confidence 344557899999999999988765 778888888888888999999999988774 77778888999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 003082 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQK 317 (850)
Q Consensus 238 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~ 317 (850)
++|+..|+++.+.. +.+...+..+..++...|++++|...++.+......+....++.......|++++|...++.+.+
T Consensus 127 ~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 127 ATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999998752 24567888899999999999999999988876533222222222222345678888888888766
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHH----HHHHHHHHHHCC
Q 003082 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM----ALKVKEDMLSAG 393 (850)
Q Consensus 318 ~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~----A~~l~~~m~~~g 393 (850)
....++...+..+...+.+.|++++|...|+.+.+. .+.+...+..+...|...|++++ |...|++..+..
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 206 FFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR-----GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 543344445555567777888888888888877762 13345666777777788888775 677777777654
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 003082 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (850)
Q Consensus 394 ~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 460 (850)
.. +...+..+...+.+.|++++|...+++..+.. +.+...+..+..+|.+.|++++|...|+.+.
T Consensus 281 P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al 345 (656)
T PRK15174 281 SD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLA 345 (656)
T ss_pred CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 32 56677777788888888888888888877653 2334556667777777888888877776654
No 21
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.76 E-value=7.6e-14 Score=153.97 Aligned_cols=539 Identities=13% Similarity=0.049 Sum_probs=359.6
Q ss_pred ccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHH
Q 003082 62 TVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (850)
Q Consensus 62 ~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~ 141 (850)
.++..|++ ......-+......|+|..|+.+|..++... |....-+. +.. -..+++.|+.+.|+..|.++.
T Consensus 156 Vl~~sp~N-il~LlGkA~i~ynkkdY~~al~yyk~al~in--p~~~aD~r-Igi----g~Cf~kl~~~~~a~~a~~ral- 226 (1018)
T KOG2002|consen 156 VLKQSPDN-ILALLGKARIAYNKKDYRGALKYYKKALRIN--PACKADVR-IGI----GHCFWKLGMSEKALLAFERAL- 226 (1018)
T ss_pred HHhhCCcc-hHHHHHHHHHHhccccHHHHHHHHHHHHhcC--cccCCCcc-chh----hhHHHhccchhhHHHHHHHHH-
Confidence 34556665 5555555666677799999999999988874 22211110 111 123558899999999999999
Q ss_pred cCCCCccccchhhhHHHHHHHHh---hhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCC
Q 003082 142 LGVAPLELFDGSGFKLLKNECQR---LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP 218 (850)
Q Consensus 142 ~~~~p~~~~~~~~~~~l~~~~~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p 218 (850)
.+.|.. .++++.++.. .-+...+..++.++...-. ..+.+++..+.+..-|...|++..+..+...+-
T Consensus 227 -qLdp~~------v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~--~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 227 -QLDPTC------VSALVALGEVDLNFNDSDSYKKGVQLLQRAYK--ENNENPVALNHLANHFYFKKDYERVWHLAEHAI 297 (1018)
T ss_pred -hcChhh------HHHHHHHHHHHHHccchHHHHHHHHHHHHHHh--hcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 557743 3334333322 2233445566666665543 337888999999999999999999988765541
Q ss_pred -------CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH
Q 003082 219 -------RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291 (850)
Q Consensus 219 -------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 291 (850)
--...|+.++.+|..+|++++|...|.+..+....--+..+--|...|.+.|+++.+...|+.+.+. .||.
T Consensus 298 ~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~ 375 (1018)
T KOG2002|consen 298 KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNN 375 (1018)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--Ccch
Confidence 1225688999999999999999999998877532222445667889999999999999999999876 5776
Q ss_pred HHHHHHHHh-hcC------ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-hhhcCCcccCH
Q 003082 292 YVFNSLMNV-NAH------DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH-LEAKGVLKLDV 363 (850)
Q Consensus 292 ~t~~~ll~~-~~~------~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~-~~~~g~~~~d~ 363 (850)
.--+.++.+ |++ ..+.|..+.....+.- +.|...|-.+...+... +...++..|..... +...+. .+..
T Consensus 376 ~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~-~ip~ 452 (1018)
T KOG2002|consen 376 YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGK-QIPP 452 (1018)
T ss_pred HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCC-CCCH
Confidence 555555553 443 3466777777776653 45777787776666554 44444777766553 333443 4777
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 003082 364 FTYSTIVKVFADAKWWQMALKVKEDMLSA---GVTP------NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434 (850)
Q Consensus 364 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p------~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 434 (850)
...|.+...+...|++++|...|...+.. ...+ +..+--.+...+-..++++.|.++|..+.+. .|+-+
T Consensus 453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YI 530 (1018)
T KOG2002|consen 453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYI 530 (1018)
T ss_pred HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhH
Confidence 88999999999999999999999988754 1222 3223334566667778999999999999876 34433
Q ss_pred -HHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCC-CcccccccccCCC
Q 003082 435 -CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN-SHYSSFDKRFSFK 512 (850)
Q Consensus 435 -~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 512 (850)
.|--+...--..+...+|...++.....+.........-|....... ...++ ..+....++....
T Consensus 531 d~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~-------------~~~~a~k~f~~i~~~~~~~ 597 (1018)
T KOG2002|consen 531 DAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKS-------------EWKPAKKKFETILKKTSTK 597 (1018)
T ss_pred HHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhh-------------hhcccccHHHHHHhhhccC
Confidence 23333322233467788888888776543211100000000000000 00000 0111112222223
Q ss_pred cCHHHHHHHHHHHh--------------ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 003082 513 PTTTTYNILMKACC--------------TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDG 578 (850)
Q Consensus 513 p~~~t~~~li~~~~--------------~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 578 (850)
+|+.+.-+|-+.|. +..++|.++|.+..+... -|.+.-|-+.-.++..|++.+|..+|.+..+..
T Consensus 598 ~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~ 676 (1018)
T KOG2002|consen 598 TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREAT 676 (1018)
T ss_pred CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHH
Confidence 56666555555332 135789999998888532 377777888889999999999999999999864
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003082 579 MSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH-YQIQPNLVTYITLLRARSRYGSLHEVQQC 640 (850)
Q Consensus 579 ~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~li~a~~~~g~~~~a~~a 640 (850)
. -+..+|-.+..+|...|++..|.++|+...+ .+-.-+......|-+++-+.|.+.++.++
T Consensus 677 ~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ 738 (1018)
T KOG2002|consen 677 S-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEA 738 (1018)
T ss_pred h-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3 2456788899999999999999999998766 44455788899999999999998885553
No 22
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=7.5e-14 Score=139.98 Aligned_cols=440 Identities=14% Similarity=0.187 Sum_probs=300.4
Q ss_pred hhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHH-HHHHHHHHhCCCCCCCcccHHHHHHHH
Q 003082 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMF-VGLMEVLEEFRLPVKELDEEFRIVQLC 201 (850)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (850)
...+|.++++.-+|+.|...|+..+.-...+++. +.+ |-+..+..=| .+.|-.|..+|.. +..+|
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~----LV~-~~Ns~~~~~~E~~~Fv~~~~~~E~--S~~sW------- 190 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQLELFR----LVT-YYNSSNVPFAEWEEFVGMRNFGED--STSSW------- 190 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHH----HHH-hhcCCCCcchhHHHHhhccccccc--ccccc-------
Confidence 3478999999999999998776665433223222 222 2233332211 1334445444422 22222
Q ss_pred HcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003082 202 VNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281 (850)
Q Consensus 202 ~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 281 (850)
+.|.+ |.-+|+..|+.+.++..+|.++|+-...+.|.++|++......+.+..+||.+|.+-+-. .-.+++.+
T Consensus 191 -K~G~v--AdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~E 263 (625)
T KOG4422|consen 191 -KSGAV--ADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAE 263 (625)
T ss_pred -ccccH--HHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHH
Confidence 33444 447889999999999999999999999999999999998877778999999999865433 23789999
Q ss_pred HHhCCCCcCHHHHHHHHHhh--cCChH----HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHH-Hh
Q 003082 282 LRSQNVTLNIYVFNSLMNVN--AHDLK----FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL-AQEIYGEVK-HL 353 (850)
Q Consensus 282 m~~~g~~pd~~t~~~ll~~~--~~~~~----~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~-A~~i~~~m~-~~ 353 (850)
|.+..+.||.+|||+++.+. .|+++ .|.+++.+|++.|+.|...+|..+|..+++.++..+ |..+..++. .+
T Consensus 264 Misqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~l 343 (625)
T KOG4422|consen 264 MISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSL 343 (625)
T ss_pred HHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhh
Confidence 99999999999999999974 45544 468999999999999999999999999999988754 333333332 22
Q ss_pred hhcCCccc----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHH
Q 003082 354 EAKGVLKL----DVFTYSTIVKVFADAKWWQMALKVKEDMLSAG----VTPNT---ITWSSLINACANAGLVEQAMHLFE 422 (850)
Q Consensus 354 ~~~g~~~~----d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~---~ty~~li~~~~~~g~~~~A~~l~~ 422 (850)
..+. ++| |..-|...|..|.+..+.+-|.++..-..... +.|+. +-|..+....|.....+.....|+
T Consensus 344 tGK~-fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~ 422 (625)
T KOG4422|consen 344 TGKT-FKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYE 422 (625)
T ss_pred ccCc-ccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 222 45567788888999999999999887765321 23332 346778888999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcc
Q 003082 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHY 502 (850)
Q Consensus 423 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (850)
.|.-.-.-|+..+...++++..-.|+++-.-+++..+...|.... + +...++
T Consensus 423 ~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r------~--~l~eei-------------------- 474 (625)
T KOG4422|consen 423 DLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFR------S--DLREEI-------------------- 474 (625)
T ss_pred HhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhh------H--HHHHHH--------------------
Confidence 999887889999999999999999999999999988876653211 0 000000
Q ss_pred cccccccCCCc---CHHHHHHHHHHHhccHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 003082 503 SSFDKRFSFKP---TTTTYNILMKACCTDYYRVK-ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDG 578 (850)
Q Consensus 503 ~~~~~~~~~~p---~~~t~~~li~~~~~~~~~a~-~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 578 (850)
...+......| .-.-+.....-|+-++.++. .--.+|.+..+.| ...+.+.-.+.+.|..++|.++|..+.+++
T Consensus 475 l~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 475 LMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred HHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 11111111223 22334444444444443332 3344555544444 345555666778899999999998886543
Q ss_pred C----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003082 579 M----SPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQI 614 (850)
Q Consensus 579 ~----~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~ 614 (850)
- .|.......+++.-...+....|...++-|...+.
T Consensus 553 ~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 553 NKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred CcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 2 34444445667777778888888888888866543
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.73 E-value=1.5e-13 Score=162.59 Aligned_cols=400 Identities=11% Similarity=0.012 Sum_probs=243.2
Q ss_pred HHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHH
Q 003082 120 IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ 199 (850)
Q Consensus 120 ~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (850)
+......|+.++|++++.+... ..|.. ...+..++..+.+.|++++|+.++++.++.. |.+...+..++.
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~--~~~~~------a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~ 91 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRV--HMQLP------ARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLIL 91 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--hCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 3445588999999999999884 34432 3345566667778999999999999988765 777777888889
Q ss_pred HHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003082 200 LCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275 (850)
Q Consensus 200 ~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 275 (850)
.+...|++++|+..++.+ |.+.. +..+..++...|++++|+..|+++.+..+ .+...+..+..++...|..++|
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHH
Confidence 999999999999887664 66667 88899999999999999999999998533 3566667788888888999999
Q ss_pred HHHHHHHHhCCCCcCHH------HHHHHHHhh-c------CCh---HHHHHHHHHHHHc-CCCCCHH-HH----HHHHHH
Q 003082 276 RAIYEDLRSQNVTLNIY------VFNSLMNVN-A------HDL---KFTLEVYKNMQKL-GVMADMA-SY----NILLKA 333 (850)
Q Consensus 276 ~~~~~~m~~~g~~pd~~------t~~~ll~~~-~------~~~---~~a~~l~~~m~~~-g~~pd~~-t~----~~Ll~~ 333 (850)
+..++.... .|+.. ....++... . +++ +.|++.++.+.+. ...|+.. .+ ...+..
T Consensus 170 l~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 170 LGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 998886653 23310 111111111 0 112 4455555555532 1112111 11 011223
Q ss_pred HHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHH
Q 003082 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP---NTITWSSLINACAN 410 (850)
Q Consensus 334 ~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~ty~~li~~~~~ 410 (850)
+...|++++|...|+.+.+. +...|+. .-..+...|...|++++|+..|+++....... ....+..+..++..
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~---~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAE---GQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHhhhHHHHHHHHHHhhcc---CCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 33445666666666655441 1000111 11112445555666666666666554432110 12234444445555
Q ss_pred cCCHHHHHHHHHHHHHcCC-----------CCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCch
Q 003082 411 AGLVEQAMHLFEEMLQAGC-----------EPNS---QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNT 476 (850)
Q Consensus 411 ~g~~~~A~~l~~~m~~~g~-----------~p~~---~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~ 476 (850)
.|++++|...++.+.+... .|+. ..+..+...+...|
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g----------------------------- 373 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN----------------------------- 373 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC-----------------------------
Confidence 5666666666555554310 0110 11222333333334
Q ss_pred hhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003082 477 DRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILID 556 (850)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 556 (850)
+.++|.++++++... .+-+...+..+..
T Consensus 374 ---------------------------------------------------~~~eA~~~l~~al~~-~P~n~~l~~~lA~ 401 (765)
T PRK10049 374 ---------------------------------------------------DLPQAEMRARELAYN-APGNQGLRIDYAS 401 (765)
T ss_pred ---------------------------------------------------CHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence 444555555554443 1224567778888
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003082 557 ACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYIT 623 (850)
Q Consensus 557 ~~~~~g~~~~A~~l~~~m~~~g~~pd-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 623 (850)
.+...|++++|++.+++..+. .|| ...+-.....+...|++++|..+++++.+. .|+......
T Consensus 402 l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~ 465 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQR 465 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 888889999999998888874 454 556666667788888899999999888863 465553333
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.73 E-value=5e-14 Score=166.74 Aligned_cols=366 Identities=13% Similarity=0.048 Sum_probs=263.7
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
.......+......|+.++|+.++++..... |.. ...+......+...|++++|+++|++++ ...|+.
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~------a~~~~~lA~~~~~~g~~~~A~~~~~~al--~~~P~~-- 82 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLP------ARGYAAVAVAYRNLKQWQNSLTLWQKAL--SLEPQN-- 82 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCC--
Confidence 4445566777888999999999999998742 221 1112233345568999999999999999 446765
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCN 226 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~ 226 (850)
.++...++..+...|++++|+..++++++.. |+... +..++.++...|++++|+..++.+ |.+..++..
T Consensus 83 ----~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~ 155 (765)
T PRK10049 83 ----DDYQRGLILTLADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTE 155 (765)
T ss_pred ----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3444556667788999999999999998765 77877 889999999999999999988664 777788888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHhC-CCCcCH
Q 003082 227 FVREFGKKRDLVSALRAYDASKKHLSSPNM------YICRTIIDVCG-----ICGDY---MKSRAIYEDLRSQ-NVTLNI 291 (850)
Q Consensus 227 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~pd~ 291 (850)
++..+...|..+.|+..++.... .|+. .....++..+. ..+++ ++|++.++.+.+. .-.|+.
T Consensus 156 la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~ 232 (765)
T PRK10049 156 YVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDA 232 (765)
T ss_pred HHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCcc
Confidence 99999999999999999987664 2321 12222333222 22334 7889999988854 223332
Q ss_pred H-HH-HH----HHH-hhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCH
Q 003082 292 Y-VF-NS----LMN-VNAHDLKFTLEVYKNMQKLGVM-ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363 (850)
Q Consensus 292 ~-t~-~~----ll~-~~~~~~~~a~~l~~~m~~~g~~-pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~ 363 (850)
. .+ .. +.. ...++.++|+..|+.+.+.+.+ |+. ..-.+...|...|++++|...|+.+.+.. ........
T Consensus 233 ~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~-p~~~~~~~ 310 (765)
T PRK10049 233 TADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHP-ETIADLSD 310 (765)
T ss_pred chHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcC-CCCCCCCh
Confidence 1 11 11 111 2346899999999999987632 332 22225778999999999999999987521 00000113
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003082 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGV-----------TPN---TITWSSLINACANAGLVEQAMHLFEEMLQAGC 429 (850)
Q Consensus 364 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~-----------~p~---~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~ 429 (850)
..+..+..++.+.|++++|..+++.+..... .|+ ...+..+...+...|+.++|+.+++++....
T Consensus 311 ~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~- 389 (765)
T PRK10049 311 EELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA- 389 (765)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 4566677788999999999999999987531 123 2355677888899999999999999998763
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 003082 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (850)
Q Consensus 430 ~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 461 (850)
+.+...+..+...+...|++++|++.++....
T Consensus 390 P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~ 421 (765)
T PRK10049 390 PGNQGLRIDYASVLQARGWPRAAENELKKAEV 421 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 55667788889999999999999999987653
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.71 E-value=7.4e-13 Score=153.55 Aligned_cols=473 Identities=10% Similarity=0.019 Sum_probs=312.6
Q ss_pred ccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcC
Q 003082 64 RRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG 143 (850)
Q Consensus 64 ~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~ 143 (850)
...|+. +.....-+-...+.|++++|+..|+++++. +|....... ..+..+...|+.++|+..+++..
T Consensus 28 ~~~p~~-~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~------dll~l~~~~G~~~~A~~~~eka~--- 95 (822)
T PRK14574 28 VVNPAM-ADTQYDSLIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD------DWLQIAGWAGRDQEVIDVYERYQ--- 95 (822)
T ss_pred ccCccc-hhHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH------HHHHHHHHcCCcHHHHHHHHHhc---
Confidence 444554 444445566678899999999999999988 554321111 22334446799999999999988
Q ss_pred CCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC-CCCc-
Q 003082 144 VAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV-PRAD- 221 (850)
Q Consensus 144 ~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-p~~~- 221 (850)
.|+... ...+..++..+...|++++|+++++++++.. |+++..+..++..+...++.++|+..++.+ +.++
T Consensus 96 -~p~n~~----~~~llalA~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~ 168 (822)
T PRK14574 96 -SSMNIS----SRGLASAARAYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPT 168 (822)
T ss_pred -cCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc
Confidence 343321 3334444567778899999999999999876 877777778888889999999999988775 2222
Q ss_pred -chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh
Q 003082 222 -ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (850)
Q Consensus 222 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~ 300 (850)
..+-.++..+...++..+|++.|+++.+.. +-+...+..+..++.+.|-...|+++..+- |+.++=......
T Consensus 169 ~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l 241 (822)
T PRK14574 169 VQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQL 241 (822)
T ss_pred hHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHH
Confidence 223334444444666666999999998863 236777788888889999888888777652 332221111110
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHhhhcCCcccCHhHH----HHHHHHH
Q 003082 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT---VLAQEIYGEVKHLEAKGVLKLDVFTY----STIVKVF 373 (850)
Q Consensus 301 ~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~---~~A~~i~~~m~~~~~~g~~~~d~~ty----~~li~~~ 373 (850)
.. ....++++.+..++.. ...++ +.|+.-++.+.... +..++....| --.+-++
T Consensus 242 ---~~----~~~a~~vr~a~~~~~~----------~~~r~~~~d~ala~~~~l~~~~--~~~p~~~~~~~~~~~Drl~aL 302 (822)
T PRK14574 242 ---ER----DAAAEQVRMAVLPTRS----------ETERFDIADKALADYQNLLTRW--GKDPEAQADYQRARIDRLGAL 302 (822)
T ss_pred ---HH----HHHHHHHhhccccccc----------chhhHHHHHHHHHHHHHHHhhc--cCCCccchHHHHHHHHHHHHH
Confidence 00 1111222222111110 11233 33444444444321 1112222222 2345567
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHhCC
Q 003082 374 ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG-----CEPNSQCCNILLQACVEACQ 448 (850)
Q Consensus 374 ~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~p~~~~~~~ll~~~~~~g~ 448 (850)
...|++.++.+.|+.|...|.+....+-..+.++|...++.++|..+|..+.... ..++......|.-+|...++
T Consensus 303 ~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~ 382 (822)
T PRK14574 303 LVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQ 382 (822)
T ss_pred HHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhccc
Confidence 8899999999999999998876566788999999999999999999999997643 12344446788999999999
Q ss_pred HHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHH---HHHHH
Q 003082 449 FDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI---LMKAC 525 (850)
Q Consensus 449 ~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~---li~~~ 525 (850)
+++|..+++.+..... .... ...+ ......||-..+-. ...++
T Consensus 383 ~~~A~~~l~~~~~~~p-~~~~-~~~~--------------------------------~~~~pn~d~~~~~~l~a~~~~~ 428 (822)
T PRK14574 383 LDKAYQFAVNYSEQTP-YQVG-VYGL--------------------------------PGKEPNDDWIEGQTLLVQSLVA 428 (822)
T ss_pred HHHHHHHHHHHHhcCC-cEEe-ccCC--------------------------------CCCCCCccHHHHHHHHHHHHHH
Confidence 9999999999986321 0000 0000 00012344444433 33345
Q ss_pred hccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 003082 526 CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSP-DVVAYTTAIKVCVRSKRLKQAFS 604 (850)
Q Consensus 526 ~~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~ty~~li~~~~~~g~~~~A~~ 604 (850)
.+++.+|++.++++.... +-|......+-+.+...|.+.+|+.+++..... .| +..+....+.++...|++++|..
T Consensus 429 ~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~ 505 (822)
T PRK14574 429 LNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMEL 505 (822)
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHH
Confidence 678999999999997642 237888889999999999999999999776654 44 45666777788888899999999
Q ss_pred HHHHHHHCCCCCCHHH
Q 003082 605 LFEEMKHYQIQPNLVT 620 (850)
Q Consensus 605 l~~~m~~~g~~p~~~t 620 (850)
+.+...+. .|+...
T Consensus 506 ~~~~l~~~--~Pe~~~ 519 (822)
T PRK14574 506 LTDDVISR--SPEDIP 519 (822)
T ss_pred HHHHHHhh--CCCchh
Confidence 99888763 465543
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.69 E-value=7.1e-12 Score=145.49 Aligned_cols=422 Identities=11% Similarity=0.034 Sum_probs=306.0
Q ss_pred hhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCC--CCcchHHH--HHHHHHhcCChHH
Q 003082 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP--RADILFCN--FVREFGKKRDLVS 239 (850)
Q Consensus 164 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p--~~~~~~~~--li~~~~~~g~~~~ 239 (850)
...++|++++|+..|++.++.. |........++..+...|+.++|+.+++..- .+...+.. ++..|...|++++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 4558899999999999998765 6654333478888889999999999998863 22233333 4678999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhh--cCChHHHHHHHHHHHH
Q 003082 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQK 317 (850)
Q Consensus 240 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~--~~~~~~a~~l~~~m~~ 317 (850)
|+++|+++.+..+ .|...+..++..|...++.++|++.++.+... .|+...+..+...+ .++..+|++.++++.+
T Consensus 121 Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 121 ALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 9999999998643 35677778889999999999999999999876 56666664444444 2455569999999998
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHH------HHHHHHH-----HhcCC---HHHHH
Q 003082 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY------STIVKVF-----ADAKW---WQMAL 383 (850)
Q Consensus 318 ~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty------~~li~~~-----~~~g~---~~~A~ 383 (850)
.. +-+...+..++.++.+.|-...|+++..+-+.. +.+...-+ ..+++.- ....+ .+.|+
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-----f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al 271 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-----VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL 271 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-----cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 75 456778889999999999999998877654321 22211111 1111110 01223 34455
Q ss_pred HHHHHHHH-CCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 003082 384 KVKEDMLS-AGVTPNT-----ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457 (850)
Q Consensus 384 ~l~~~m~~-~g~~p~~-----~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~ 457 (850)
.-++.+.. .+-.|.. ...--.+-++...|++.++++.|+.|...|.+....+-..+.++|...+++++|..+|+
T Consensus 272 a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~ 351 (822)
T PRK14574 272 ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILS 351 (822)
T ss_pred HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 55555554 2222332 22334566788999999999999999998866566788899999999999999999999
Q ss_pred HHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHh--ccHHHHHHH
Q 003082 458 SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKAL 535 (850)
Q Consensus 458 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~--~~~~~a~~l 535 (850)
.+...... .....++......|..++. +++++|..+
T Consensus 352 ~~~~~~~~------------------------------------------~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~ 389 (822)
T PRK14574 352 SLYYSDGK------------------------------------------TFRNSDDLLDADDLYYSLNESEQLDKAYQF 389 (822)
T ss_pred HHhhcccc------------------------------------------ccCCCcchHHHHHHHHHHHhcccHHHHHHH
Confidence 88643210 0012344555667788886 478999999
Q ss_pred HHHHHHcCC-----------CC--CHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003082 536 MNEMRTVGL-----------SP--NHI-SWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQ 601 (850)
Q Consensus 536 ~~~m~~~g~-----------~p--~~~-ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~ 601 (850)
++.+.+.-. .| |-. .+..++..+...|++.+|++.++++.... +-|......+.+.+...|.+.+
T Consensus 390 l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~ 468 (822)
T PRK14574 390 AVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRK 468 (822)
T ss_pred HHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHH
Confidence 999987311 12 222 34556777899999999999999998753 5588899999999999999999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHH
Q 003082 602 AFSLFEEMKHYQIQP-NLVTYITLLRARSRYGSLHEVQQCL 641 (850)
Q Consensus 602 A~~l~~~m~~~g~~p-~~~t~~~li~a~~~~g~~~~a~~a~ 641 (850)
|++.++..... .| +..+......++...|++++|++.+
T Consensus 469 A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 469 AEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred HHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 99999777653 55 4667777788888889888865533
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.68 E-value=1.3e-11 Score=136.76 Aligned_cols=565 Identities=12% Similarity=0.074 Sum_probs=341.8
Q ss_pred ccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHH
Q 003082 62 TVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (850)
Q Consensus 62 ~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~ 141 (850)
++...|...++......-.+.+.|+.+.|+..|+++++. +|.....++.++.+. ..+-....+..++..+..+-
T Consensus 190 al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqL--dp~~v~alv~L~~~~---l~~~d~~s~~~~~~ll~~ay- 263 (1018)
T KOG2002|consen 190 ALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQL--DPTCVSALVALGEVD---LNFNDSDSYKKGVQLLQRAY- 263 (1018)
T ss_pred HHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhc--ChhhHHHHHHHHHHH---HHccchHHHHHHHHHHHHHH-
Confidence 455555555555556666778999999999999999998 776555544433332 22334566778888888877
Q ss_pred cCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCC-CCCcccHHHHHHHHHcCCChHHHHHHhhhC---
Q 003082 142 LGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP-VKELDEEFRIVQLCVNKPDVNLAIRYACIV--- 217 (850)
Q Consensus 142 ~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--- 217 (850)
.+.++. +. ++..+...+.-.|++..+.++.+.+...... +.-...++.++++|=.+|++++|..+|...
T Consensus 264 -~~n~~n---P~---~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~ 336 (1018)
T KOG2002|consen 264 -KENNEN---PV---ALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA 336 (1018)
T ss_pred -hhcCCC---cH---HHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc
Confidence 344443 22 2333345556679999999998888776522 222345788999999999999999988653
Q ss_pred -CCC-cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCcCH
Q 003082 218 -PRA-DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG----DYMKSRAIYEDLRSQNVTLNI 291 (850)
Q Consensus 218 -p~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~pd~ 291 (850)
+.+ ...+.-|+..|.+.|+++.|...|+...+. .+.+..+.-.|...|...+ ..+.|..++....+.- ..|.
T Consensus 337 ~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~ 414 (1018)
T KOG2002|consen 337 DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDS 414 (1018)
T ss_pred CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccH
Confidence 222 234455889999999999999999998874 2235566667777777664 4566666666665542 3456
Q ss_pred HHHHHHHHhhc-CChHHHHHHHH----HHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCH---
Q 003082 292 YVFNSLMNVNA-HDLKFTLEVYK----NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV--- 363 (850)
Q Consensus 292 ~t~~~ll~~~~-~~~~~a~~l~~----~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~--- 363 (850)
..|-.+-..+. ++...++..|. .|...+..+-....|.+.......|+++.|...|+......... ..+|.
T Consensus 415 ~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~-~n~de~~~ 493 (1018)
T KOG2002|consen 415 EAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV-ANKDEGKS 493 (1018)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh-cCcccccc
Confidence 66666655543 45444454444 34455656778888888888888888888888888776541100 12222
Q ss_pred ---hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003082 364 ---FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN-TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (850)
Q Consensus 364 ---~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 439 (850)
.+--.+...+-..++++.|...|..+.... |+ +..|--+....-..+...+|...+.+..+.. ..++..++.+
T Consensus 494 ~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~ 570 (1018)
T KOG2002|consen 494 TNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLL 570 (1018)
T ss_pred chhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHH
Confidence 222223344445567777777777776652 23 2233333322223456666777666666542 3344444444
Q ss_pred HHHHHHhCCHHHHHHHHHHHhhccccccccC--ccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccC-----CC
Q 003082 440 LQACVEACQFDRAFRLFRSWTLSKTQVALGE--DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS-----FK 512 (850)
Q Consensus 440 l~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 512 (850)
-..+.+...+..|.+-|..........+... ..-|+ ..+..+....... .....++..++..++ -+
T Consensus 571 G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN-~~~~~l~~~~rn~------ek~kk~~~KAlq~y~kvL~~dp 643 (1018)
T KOG2002|consen 571 GNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGN-VYIQALHNPSRNP------EKEKKHQEKALQLYGKVLRNDP 643 (1018)
T ss_pred HHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhH-HHHHHhcccccCh------HHHHHHHHHHHHHHHHHHhcCc
Confidence 4455555566656554444333221110000 00000 0000000000000 000001111111111 12
Q ss_pred cCHHHHHH--HHHHHhccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-CCCCCCHHHHHHH
Q 003082 513 PTTTTYNI--LMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRE-DGMSPDVVAYTTA 589 (850)
Q Consensus 513 p~~~t~~~--li~~~~~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd~~ty~~l 589 (850)
.|...-|- ++-+.++++..|..+|.+..+... -+..+|-.+.++|..+|++..|+++|+...+ ..-.-+....+.|
T Consensus 644 kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~L 722 (1018)
T KOG2002|consen 644 KNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYL 722 (1018)
T ss_pred chhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 23333333 344455789999999999998644 2445788899999999999999999998765 4445577788999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---------------CChHHHHHHHHHHHHHHHcCCC
Q 003082 590 IKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRY---------------GSLHEVQQCLAVYQDMWKAGYK 653 (850)
Q Consensus 590 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~~~---------------g~~~~a~~a~~l~~~M~~~g~~ 653 (850)
..++.+.|++.+|.+...........-..+.||..+-..--+ +.+++.+.+.++|.+|...+-.
T Consensus 723 ara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 723 ARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999888777644333456666655432110 1233456688899999987655
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.67 E-value=4.8e-13 Score=134.84 Aligned_cols=458 Identities=14% Similarity=0.133 Sum_probs=261.7
Q ss_pred CccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCc
Q 003082 146 PLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRAD 221 (850)
Q Consensus 146 p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~ 221 (850)
|......-++..+.+++..|.-...+.+|+..|+.+++....|+....-..++..+.+++++.+|+++++.. |+-.
T Consensus 192 ~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsin 271 (840)
T KOG2003|consen 192 PEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSIN 271 (840)
T ss_pred hhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccc
Confidence 333333345788888999998889999999999999998888887777778899999999999999998774 4322
Q ss_pred -----chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---------
Q 003082 222 -----ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV--------- 287 (850)
Q Consensus 222 -----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--------- 287 (850)
.+.+++...|.+.|.|++|+..|+...+. .||..+--.|+-++.--|+-++..+.|..|.....
T Consensus 272 k~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~ 349 (840)
T KOG2003|consen 272 KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIK 349 (840)
T ss_pred hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccC
Confidence 45677888899999999999999998874 48887755555556667899999999999875422
Q ss_pred ---CcCHHHHHHHHHh-hc-----C---ChHHHHHHHHHHHHcCCCCCHH-------------HHH--------HHHHHH
Q 003082 288 ---TLNIYVFNSLMNV-NA-----H---DLKFTLEVYKNMQKLGVMADMA-------------SYN--------ILLKAC 334 (850)
Q Consensus 288 ---~pd~~t~~~ll~~-~~-----~---~~~~a~~l~~~m~~~g~~pd~~-------------t~~--------~Ll~~~ 334 (850)
.|+....|.-|+. +. . +.+.++-.-..++.--+.||-. .|. .-...|
T Consensus 350 ~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~ 429 (840)
T KOG2003|consen 350 EKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGEL 429 (840)
T ss_pred CcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHH
Confidence 2444444444432 11 1 1122211111111111122210 000 112357
Q ss_pred HHcCChHHHHHHHHHHHHhhhcCCcccCHhH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 003082 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT-YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413 (850)
Q Consensus 335 ~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~t-y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 413 (850)
.+.|+++.|.+++.-+.+.. . -..+... --.++..+--.+++..|...-+..+... .-|....+.--+.....|+
T Consensus 430 lk~~d~~~aieilkv~~~kd--n-k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 430 LKNGDIEGAIEILKVFEKKD--N-KTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HhccCHHHHHHHHHHHHhcc--c-hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 89999999999998877521 1 0111111 1122222222446777777766665332 1233333333334456788
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCC
Q 003082 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNT 493 (850)
Q Consensus 414 ~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (850)
++.|.+.+++.+...-.-....||+-+ .+-+.|++++|++.|-.+...-
T Consensus 506 ~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il------------------------------ 554 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAIL------------------------------ 554 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHH------------------------------
Confidence 888888888887654333333455444 3567788888888876543210
Q ss_pred CCCcCCCcccccccccCCCcCHHHHHHHHHHH--hccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 003082 494 PNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQIL 571 (850)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~--~~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 571 (850)
..+....-.+..-| ..+..+|.+++.+.... ++-|+.+.+-|.+.|-+.|+-..|++.+
T Consensus 555 ------------------~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ 615 (840)
T KOG2003|consen 555 ------------------LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCH 615 (840)
T ss_pred ------------------HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhh
Confidence 11122222222222 12344444444333221 2224555555666666666665555554
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHc
Q 003082 572 KIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARS-RYGSLHEVQQCLAVYQDMWKA 650 (850)
Q Consensus 572 ~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~-~~g~~~~a~~a~~l~~~M~~~ 650 (850)
-+--.. ++-|..+..-|..-|....-+++|+.+|++..- ++|+.+-|..+|..|. |.|+++. |+++|++..+
T Consensus 616 ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqk---a~d~yk~~hr- 688 (840)
T KOG2003|consen 616 YDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQK---AFDLYKDIHR- 688 (840)
T ss_pred hhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHH---HHHHHHHHHH-
Confidence 333221 233455555555555555555666666655442 4566666665554443 3455443 5555555433
Q ss_pred CCCCCHHHHHHHHHHH
Q 003082 651 GYKANDTYLKELIEEW 666 (850)
Q Consensus 651 g~~p~~~~~~~li~~~ 666 (850)
.++-|...+..|+.-.
T Consensus 689 kfpedldclkflvri~ 704 (840)
T KOG2003|consen 689 KFPEDLDCLKFLVRIA 704 (840)
T ss_pred hCccchHHHHHHHHHh
Confidence 3444555555555433
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.63 E-value=1.3e-10 Score=128.03 Aligned_cols=515 Identities=13% Similarity=0.086 Sum_probs=340.3
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
+...-..++.+...|++++|..++.++++. +|..+.. +..++.++. .+|+.+.++.++--+. -+.|.+
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--dp~~~~a---y~tL~~IyE---qrGd~eK~l~~~llAA--HL~p~d-- 206 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQ--DPRNPIA---YYTLGEIYE---QRGDIEKALNFWLLAA--HLNPKD-- 206 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--Cccchhh---HHHHHHHHH---HcccHHHHHHHHHHHH--hcCCCC--
Confidence 445556677777789999999999999998 6665444 444444443 8899999988865555 667776
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh----CCCCc-----
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRAD----- 221 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~p~~~----- 221 (850)
.+.+..++-...++|.+.+|.-+|.+.++.. |++......-...|.+.|+...|...|.+ .|+.+
T Consensus 207 ----~e~W~~ladls~~~~~i~qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~ 280 (895)
T KOG2076|consen 207 ----YELWKRLADLSEQLGNINQARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIE 280 (895)
T ss_pred ----hHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHH
Confidence 5667777777788999999999999999876 77766677778889999999999887655 35333
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC----------
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHL-SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN---------- 290 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd---------- 290 (850)
..-...++.|...++-+.|.+.++.....+ -..+...++.++..|.+...++.|......+......+|
T Consensus 281 d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~ 360 (895)
T KOG2076|consen 281 DLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERR 360 (895)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhc
Confidence 222245778888888899999998877632 224566788999999999999999999888876322222
Q ss_pred -----------------HHHHHHHHHh-hcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003082 291 -----------------IYVFNSLMNV-NAHDLKFTLEVYKNMQKLG--VMADMASYNILLKACCLAGNTVLAQEIYGEV 350 (850)
Q Consensus 291 -----------------~~t~~~ll~~-~~~~~~~a~~l~~~m~~~g--~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m 350 (850)
...+...+.. ..+..+....+...+...+ ..-+...|.-+..+|...|++.+|..+|..+
T Consensus 361 ~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i 440 (895)
T KOG2076|consen 361 REEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPI 440 (895)
T ss_pred cccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 2221111111 1123333444445555555 4445678899999999999999999999999
Q ss_pred HHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----
Q 003082 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML----- 425 (850)
Q Consensus 351 ~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~----- 425 (850)
.... ..-+...|-.+..+|...|.+++|...|+..+..... +...--+|-..+-+.|+.++|.+.+..+.
T Consensus 441 ~~~~----~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~ 515 (895)
T KOG2076|consen 441 TNRE----GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGR 515 (895)
T ss_pred hcCc----cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCcc
Confidence 8632 2335779999999999999999999999999876422 45556667777889999999999999864
Q ss_pred ---HcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcc
Q 003082 426 ---QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHY 502 (850)
Q Consensus 426 ---~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (850)
..+..|+.....-..+.+.+.|+.++=.+.-..|............ .-... ....
T Consensus 516 ~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~---------~~~k~--r~~~----------- 573 (895)
T KOG2076|consen 516 NAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFP---------RNKKK--RRRA----------- 573 (895)
T ss_pred chhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcc---------hHHHH--HHHh-----------
Confidence 2334556666666677888889888866655555433211100000 00000 0000
Q ss_pred cccccccCCCcCHHHHHHHHHHHhc--c---HHHH---HHHHHHHHHcCCCCCHH--HHHHHHHHHHcCCCHHHHHHHHH
Q 003082 503 SSFDKRFSFKPTTTTYNILMKACCT--D---YYRV---KALMNEMRTVGLSPNHI--SWTILIDACGGSGNVEGALQILK 572 (850)
Q Consensus 503 ~~~~~~~~~~p~~~t~~~li~~~~~--~---~~~a---~~l~~~m~~~g~~p~~~--ty~~li~~~~~~g~~~~A~~l~~ 572 (850)
....+.+-...+...++.+.-+ + .+.+ ...+..-...|+..+.. .+.-++..+++.+++++|+.+..
T Consensus 574 ---~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~ 650 (895)
T KOG2076|consen 574 ---IAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVF 650 (895)
T ss_pred ---hccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 0000011222222222322221 0 0000 11122222334444433 55678889999999999999999
Q ss_pred HHHHCCC--CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CC--CCC-HHHHHHHHHHHHhcCC
Q 003082 573 IMREDGM--SPDV---VAYTTAIKVCVRSKRLKQAFSLFEEMKHY-QI--QPN-LVTYITLLRARSRYGS 633 (850)
Q Consensus 573 ~m~~~g~--~pd~---~ty~~li~~~~~~g~~~~A~~l~~~m~~~-g~--~p~-~~t~~~li~a~~~~g~ 633 (850)
.+.+... .++. ..=...+.+.+..+++..|.+.++.|... +. .|. ...|+..++.+.+.|+
T Consensus 651 ~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q 720 (895)
T KOG2076|consen 651 TALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQ 720 (895)
T ss_pred HHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9886421 2222 22355677888899999999999999863 21 232 4456656677766654
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=6.8e-11 Score=119.11 Aligned_cols=414 Identities=15% Similarity=0.150 Sum_probs=263.0
Q ss_pred hhhcCcHHHHHHHHHHHHhCCCCCCCcccHH--HHHHHHHcCCChHHHH-HHhhhCC----CCcchHHHHHHHHHhcCCh
Q 003082 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEF--RIVQLCVNKPDVNLAI-RYACIVP----RADILFCNFVREFGKKRDL 237 (850)
Q Consensus 165 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~A~-~~~~~~p----~~~~~~~~li~~~~~~g~~ 237 (850)
+..+|++.++.-+|+.|...+......+... .++ .|-...++--|+ +.|-.+. ++..+| +.|..
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV-~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW--------K~G~v 195 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQLELFRLV-TYYNSSNVPFAEWEEFVGMRNFGEDSTSSW--------KSGAV 195 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHH-HhhcCCCCcchhHHHHhhcccccccccccc--------ccccH
Confidence 4467999999999999998875543222111 111 122222222221 1121111 111111 23333
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 003082 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQK 317 (850)
Q Consensus 238 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~ 317 (850)
.+ -+|+.. +.+..+|..||.++++-...+.|.++|++-.....+.+..+||.+|.+..- ....++..+|..
T Consensus 196 Ad--L~~E~~-----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~--~~~K~Lv~EMis 266 (625)
T KOG4422|consen 196 AD--LLFETL-----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY--SVGKKLVAEMIS 266 (625)
T ss_pred HH--HHHhhc-----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh--hccHHHHHHHHH
Confidence 32 333332 236689999999999999999999999999998889999999999986331 112789999999
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChHHH----HHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHH-HHHHHHHHHH-
Q 003082 318 LGVMADMASYNILLKACCLAGNTVLA----QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM-ALKVKEDMLS- 391 (850)
Q Consensus 318 ~g~~pd~~t~~~Ll~~~~~~g~~~~A----~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~-A~~l~~~m~~- 391 (850)
..+.||..|+|+++++..+.|+++.| .+++.+|++. | +.|...+|..+|..+++.++..+ |..++.++..
T Consensus 267 qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKei---G-VePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ 342 (625)
T KOG4422|consen 267 QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEI---G-VEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNS 342 (625)
T ss_pred hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh---C-CCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHh
Confidence 99999999999999999999988765 4566777764 4 89999999999999999887644 4444444432
Q ss_pred ---CCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCCH---HHHHHHHHHHHHhCCHHHHHHHHH
Q 003082 392 ---AGVTP----NTITWSSLINACANAGLVEQAMHLFEEMLQAG----CEPNS---QCCNILLQACVEACQFDRAFRLFR 457 (850)
Q Consensus 392 ---~g~~p----~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~---~~~~~ll~~~~~~g~~~~A~~l~~ 457 (850)
..++| |...|..-++.|.+..+.+-|.++..-+.... +.|+. .-|..+..+.|.....+.-...|+
T Consensus 343 ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~ 422 (625)
T KOG4422|consen 343 LTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYE 422 (625)
T ss_pred hccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 45567778888888889988988876655321 33432 236677888888888888888888
Q ss_pred HHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHh--ccHHHHHHH
Q 003082 458 SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKAL 535 (850)
Q Consensus 458 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~--~~~~~a~~l 535 (850)
.|...- +-|+..+...++.+.. ++++-.-++
T Consensus 423 ~lVP~~-----------------------------------------------y~p~~~~m~~~lrA~~v~~~~e~ipRi 455 (625)
T KOG4422|consen 423 DLVPSA-----------------------------------------------YFPHSQTMIHLLRALDVANRLEVIPRI 455 (625)
T ss_pred Hhccce-----------------------------------------------ecCCchhHHHHHHHHhhcCcchhHHHH
Confidence 876432 3466666666666653 345555666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCC-C--------------------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003082 536 MNEMRTVGLSPNHISWTILIDACGGSG-N--------------------VEGALQILKIMREDGMSPDVVAYTTAIKVCV 594 (850)
Q Consensus 536 ~~~m~~~g~~p~~~ty~~li~~~~~~g-~--------------------~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~ 594 (850)
+.+++..|..-+...-.-++..+|+.. + .+.-+..-.+|.+. .-.....+.+.-.+.
T Consensus 456 w~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~ 533 (625)
T KOG4422|consen 456 WKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLL 533 (625)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHH
Confidence 666666554333333333333333332 1 01111111233332 334556677777788
Q ss_pred HcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCC
Q 003082 595 RSKRLKQAFSLFEEMKHYQI----QPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGY 652 (850)
Q Consensus 595 ~~g~~~~A~~l~~~m~~~g~----~p~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~~g~ 652 (850)
+.|..++|.++|..+.+.+- .|......-++++-.+..+... |+..++-|....+
T Consensus 534 R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsq---A~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 534 RAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQ---AIEVLQLASAFNL 592 (625)
T ss_pred HcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHH---HHHHHHHHHHcCc
Confidence 89999999999988865332 2333334455666666666555 4555555655443
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.50 E-value=1.5e-09 Score=119.93 Aligned_cols=295 Identities=12% Similarity=0.128 Sum_probs=216.8
Q ss_pred hhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCChHH
Q 003082 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVS 239 (850)
Q Consensus 164 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~p~~~~~~~~li~~~~~~g~~~~ 239 (850)
.+.-.|+.++|.+++.++++.. |....+|+.|+..|.++|+..++....-. -|++...|..+.....+.|++++
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 3334599999999999998876 88889999999999999999999876533 37788999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhc------CChHHHHHHHH
Q 003082 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA------HDLKFTLEVYK 313 (850)
Q Consensus 240 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~------~~~~~a~~l~~ 313 (850)
|.-.|.+.++..+ ++...+-.-+..|-+.|+...|..-|.++.....+.|..-+..++...+ ++.+.|++.++
T Consensus 226 A~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 226 ARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999753 4555555566789999999999999999998754444444555554322 34477777777
Q ss_pred HHHH-cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhh-----------cC------------CcccCHhHHHHH
Q 003082 314 NMQK-LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA-----------KG------------VLKLDVFTYSTI 369 (850)
Q Consensus 314 ~m~~-~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~-----------~g------------~~~~d~~ty~~l 369 (850)
.... .+-..+...+++++..|.+...++.|......+..... .+ .+.++... -.+
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl 383 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRL 383 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhH
Confidence 7655 23345667888999999999999999887776665110 00 01222222 122
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Q 003082 370 VKVFADAKWWQMALKVKEDMLSAG--VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447 (850)
Q Consensus 370 i~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g 447 (850)
+-++.+.+..+....+.....+.. +.-+...|.-+..+|.+.|++.+|+.+|..+......-+...|--+..+|...|
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 333444444444444555555554 333566788888999999999999999999887755566778888888888999
Q ss_pred CHHHHHHHHHHHhhc
Q 003082 448 QFDRAFRLFRSWTLS 462 (850)
Q Consensus 448 ~~~~A~~l~~~m~~~ 462 (850)
.+++|.+.|+.....
T Consensus 464 e~e~A~e~y~kvl~~ 478 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLIL 478 (895)
T ss_pred hHHHHHHHHHHHHhc
Confidence 999999998887654
No 32
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.40 E-value=8.4e-10 Score=121.33 Aligned_cols=284 Identities=10% Similarity=-0.063 Sum_probs=210.1
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh----CCCCcc-hHHHHHHHHHhcCChHHHH
Q 003082 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADI-LFCNFVREFGKKRDLVSAL 241 (850)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~p~~~~-~~~~li~~~~~~g~~~~A~ 241 (850)
..|+++.|.+.+.+..+.. |+....+...+.+..+.|+++.|.+++.. .|.+.. +.......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4799999999999877654 54444455567788899999999999877 355443 3344688899999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcC-----ChHHHHHHHHHHH
Q 003082 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH-----DLKFTLEVYKNMQ 316 (850)
Q Consensus 242 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~-----~~~~a~~l~~~m~ 316 (850)
..++.+.+..+ -+..++..+..+|...|++++|.+++..+.+.++.+.......-..+..+ ..+.+.+.+..+.
T Consensus 174 ~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999998642 46678899999999999999999999999998765333221111122222 1122233444444
Q ss_pred HcC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhH---HHHHHHHHHhcCCHHHHHHHHHHHH
Q 003082 317 KLG---VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT---YSTIVKVFADAKWWQMALKVKEDML 390 (850)
Q Consensus 317 ~~g---~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~t---y~~li~~~~~~g~~~~A~~l~~~m~ 390 (850)
+.. .+.+...+..+...+...|+.++|.+++++..+ ..||... .....-.....++.+.+.+.++...
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~------~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK------KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh------hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 432 123788899999999999999999999999887 2455432 1222222344678889999998887
Q ss_pred HCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 003082 391 SAGVTPNT--ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (850)
Q Consensus 391 ~~g~~p~~--~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 460 (850)
+.... |. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++-.
T Consensus 327 k~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 327 KNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 65322 34 56678889999999999999999954444457999999999999999999999999998754
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.39 E-value=1.7e-07 Score=100.01 Aligned_cols=484 Identities=12% Similarity=0.065 Sum_probs=306.0
Q ss_pred hhhccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHH
Q 003082 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (850)
Q Consensus 59 ~l~~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~ 138 (850)
+-.++...|++ ...|....+. ..-++|+.++.++.+.. |.+...++ ++.+..-|+.|..++++
T Consensus 369 lRKALe~iP~s-v~LWKaAVel----E~~~darilL~rAvecc--p~s~dLwl----------AlarLetYenAkkvLNk 431 (913)
T KOG0495|consen 369 LRKALEHIPRS-VRLWKAAVEL----EEPEDARILLERAVECC--PQSMDLWL----------ALARLETYENAKKVLNK 431 (913)
T ss_pred HHHHHHhCCch-HHHHHHHHhc----cChHHHHHHHHHHHHhc--cchHHHHH----------HHHHHHHHHHHHHHHHH
Confidence 33488899998 7777655443 55677999999999873 43322222 33466788999999999
Q ss_pred HHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHH----hCCCCCCCcccHHHHHHHHHcCCChHHHHHHh
Q 003082 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLE----EFRLPVKELDEEFRIVQLCVNKPDVNLAIRYA 214 (850)
Q Consensus 139 ~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 214 (850)
+.+ .-|.. -.+++.+...--.+|..+....++.+-+ ..|... +...|..=+..|...|.+--+..+.
T Consensus 432 aRe--~iptd------~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i-~rdqWl~eAe~~e~agsv~TcQAIi 502 (913)
T KOG0495|consen 432 ARE--IIPTD------REIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEI-NRDQWLKEAEACEDAGSVITCQAII 502 (913)
T ss_pred HHh--hCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceee-cHHHHHHHHHHHhhcCChhhHHHHH
Confidence 985 35554 4556666666667888888888776533 334332 2234544455555555544333222
Q ss_pred hh----C---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 003082 215 CI----V---PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287 (850)
Q Consensus 215 ~~----~---p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 287 (850)
.. . .+...+|..-...|.+.+.++-|+.+|...++- .+-+...|...+..--..|..++...+|++....
T Consensus 503 ~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-- 579 (913)
T KOG0495|consen 503 RAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-- 579 (913)
T ss_pred HHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--
Confidence 11 1 112256777777888888888888888877764 2235566777776666677788888888777765
Q ss_pred CcCHHH-HHHHHH--hhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHh
Q 003082 288 TLNIYV-FNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364 (850)
Q Consensus 288 ~pd~~t-~~~ll~--~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ 364 (850)
.|-... |..... ..+|++..|..++.+..+.. +-+...|-.-++.-..+..++.|..+|.+... ..|+..
T Consensus 580 ~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~------~sgTeR 652 (913)
T KOG0495|consen 580 CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS------ISGTER 652 (913)
T ss_pred CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc------cCCcch
Confidence 333322 222111 24577777777777776654 23566677777777777777777777777654 346666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003082 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN-TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443 (850)
Q Consensus 365 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~ 443 (850)
.|.--++..--.+..++|.+++++.++. -|+ ...|-.+.+.+-+.++++.|...|..-.+. |+-....|-.+...=
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakle 729 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLE 729 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHH
Confidence 6666666666677777777777777654 334 345566666666677777776666554433 333444566666666
Q ss_pred HHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHH
Q 003082 444 VEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK 523 (850)
Q Consensus 444 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~ 523 (850)
-+.|.+-+|..+++.....+ +.+...|-..|.
T Consensus 730 Ek~~~~~rAR~ildrarlkN------------------------------------------------Pk~~~lwle~Ir 761 (913)
T KOG0495|consen 730 EKDGQLVRARSILDRARLKN------------------------------------------------PKNALLWLESIR 761 (913)
T ss_pred HHhcchhhHHHHHHHHHhcC------------------------------------------------CCcchhHHHHHH
Confidence 66777777777777655432 344555555555
Q ss_pred HHh--ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003082 524 ACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQ 601 (850)
Q Consensus 524 ~~~--~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~ 601 (850)
.-. ++.+.|..++.+..+. ++-+...|..-|....+.++-......+++ +.-|....-.+...|....++++
T Consensus 762 ~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~k 835 (913)
T KOG0495|consen 762 MELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEK 835 (913)
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHH
Confidence 433 4667777777666654 444556777777777776665444444333 34466666677777888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 003082 602 AFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHE 636 (850)
Q Consensus 602 A~~l~~~m~~~g~~p~~~t~~~li~a~~~~g~~~~ 636 (850)
|.+.|.+....+ .-+-.+|.-+..-+.++|.-++
T Consensus 836 ar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed 869 (913)
T KOG0495|consen 836 AREWFERAVKKD-PDNGDAWAWFYKFELRHGTEED 869 (913)
T ss_pred HHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHH
Confidence 888888887643 2346677777888888887555
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.36 E-value=2.4e-09 Score=117.07 Aligned_cols=277 Identities=14% Similarity=0.036 Sum_probs=211.6
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCCcccHHHH-HHHHHcCCChHHHHHHhhhC---CCCcchHH--HHHHHHHhcCChHHHH
Q 003082 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRI-VQLCVNKPDVNLAIRYACIV---PRADILFC--NFVREFGKKRDLVSAL 241 (850)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~---p~~~~~~~--~li~~~~~~g~~~~A~ 241 (850)
.|++++|.+.+....+.. +.+..++.+ ..+..+.|+++.|..++..+ +++..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 699999998888765432 222333333 44447899999999999775 22222222 3478899999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH-------HHHHHHHHhh--cCChHHHHHHH
Q 003082 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI-------YVFNSLMNVN--AHDLKFTLEVY 312 (850)
Q Consensus 242 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-------~t~~~ll~~~--~~~~~~a~~l~ 312 (850)
+.++.+.+.. +-+...+..+...|.+.|+|++|.+++..+.+.+..++. .+|..++... ..+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999998864 346788999999999999999999999999988765322 1233333321 22445556666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003082 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (850)
Q Consensus 313 ~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 392 (850)
+.+.+. .+.++.....+...+...|+.++|.+++++..+ ..+|.. -.++.+.+..++.+++++..+...+.
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~------~~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK------RQYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh------cCCCHH--HHHHHhhccCCChHHHHHHHHHHHhh
Confidence 666442 355788889999999999999999999988775 244442 22344555679999999999999877
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 003082 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (850)
Q Consensus 393 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 460 (850)
... |...+..+...|.+.+++++|.+.|+...+. .|+..+|..+...+.+.|+.++|.+++++-.
T Consensus 324 ~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 324 HGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 543 6778889999999999999999999999985 7999999999999999999999999998654
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.35 E-value=4.3e-09 Score=106.74 Aligned_cols=421 Identities=14% Similarity=0.115 Sum_probs=253.0
Q ss_pred hhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccc
Q 003082 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (850)
Q Consensus 70 ~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~ 149 (850)
++...+.+.-.+.+.|+|++|+.-|++.... .|+-.. .+ +++..+..-|+.+.-.+.|.+++.....|+.-
T Consensus 275 rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a------~~-nl~i~~f~i~d~ekmkeaf~kli~ip~~~ddd 345 (840)
T KOG2003|consen 275 RIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIA------AL-NLIICAFAIGDAEKMKEAFQKLIDIPGEIDDD 345 (840)
T ss_pred HHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHh------hh-hhhhhheecCcHHHHHHHHHHHhcCCCCCCcc
Confidence 3455555566678899999999999999988 444211 11 22333446689999999999998765555432
Q ss_pred cch----hhhHHHHHHHHh-----hhhc---CcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC
Q 003082 150 FDG----SGFKLLKNECQR-----LLDS---GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV 217 (850)
Q Consensus 150 ~~~----~~~~~l~~~~~~-----~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 217 (850)
.+. .--+.+++.... -.+. .+.++|+-.-.++..--+.|+-. .+ .+..++.+...
T Consensus 346 kyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa-----~g--------~dwcle~lk~s 412 (840)
T KOG2003|consen 346 KYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA-----AG--------CDWCLESLKAS 412 (840)
T ss_pred cccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh-----cc--------cHHHHHHHHHh
Confidence 110 001112211111 0111 11222222222222211112111 10 11111111111
Q ss_pred CCCc---chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhc-CCHHHHHHHHHHHHhCCCCcCHH
Q 003082 218 PRAD---ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDV-CGIC-GDYMKSRAIYEDLRSQNVTLNIY 292 (850)
Q Consensus 218 p~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~-g~~~~A~~~~~~m~~~g~~pd~~ 292 (850)
...+ ..-.+-...|.+.|+++.|++++.-..+.+-..-...-|.|-.. |.+. .++.+|.+.-+..... |.+
T Consensus 413 ~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~----dry 488 (840)
T KOG2003|consen 413 QHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI----DRY 488 (840)
T ss_pred hhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc----ccc
Confidence 1101 11123345678889999998888877664333322333333333 2232 3677777776665532 222
Q ss_pred HHHHHHH----h-hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHH
Q 003082 293 VFNSLMN----V-NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367 (850)
Q Consensus 293 t~~~ll~----~-~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~ 367 (850)
--.++.+ + ..|+++.|.+.|++.+...-.-....||+=+ .+...|++++|++.|-.+... +..++.+.-
T Consensus 489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~i-----l~nn~evl~ 562 (840)
T KOG2003|consen 489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-----LLNNAEVLV 562 (840)
T ss_pred CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-----HHhhHHHHH
Confidence 2223333 1 2368888988888887654332333444333 456788899999888777653 445666777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Q 003082 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447 (850)
Q Consensus 368 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g 447 (850)
.+.+.|-...+...|.+++-+.... ++-|....+-|.+.|-+.|+-.+|.+.+-+--.- ++.+..+..-|...|....
T Consensus 563 qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtq 640 (840)
T KOG2003|consen 563 QIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQ 640 (840)
T ss_pred HHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhH
Confidence 7778888888888888888766543 3446778888888888999888888877654432 5667778888888888888
Q ss_pred CHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHh-
Q 003082 448 QFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC- 526 (850)
Q Consensus 448 ~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~- 526 (850)
-++++...|+...- +.|+..-|..+|..|.
T Consensus 641 f~ekai~y~ekaal-------------------------------------------------iqp~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 641 FSEKAINYFEKAAL-------------------------------------------------IQPNQSKWQLMIASCFR 671 (840)
T ss_pred HHHHHHHHHHHHHh-------------------------------------------------cCccHHHHHHHHHHHHH
Confidence 88889988876532 4788888888888885
Q ss_pred --ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003082 527 --TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMR 575 (850)
Q Consensus 527 --~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 575 (850)
+++.+|.++++...+. ++-|......|+..+...|. .+|.++-+++.
T Consensus 672 rsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~key~~kle 720 (840)
T KOG2003|consen 672 RSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDAKEYADKLE 720 (840)
T ss_pred hcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhHHHHHHHHH
Confidence 4688899888888877 55577788888888877774 33444444443
No 36
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.34 E-value=8.8e-11 Score=127.28 Aligned_cols=261 Identities=13% Similarity=0.078 Sum_probs=167.7
Q ss_pred cCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCC
Q 003082 65 RDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGV 144 (850)
Q Consensus 65 ~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~ 144 (850)
.+|.. ..+...|+..|..+|+|+.|+.+++..++.-.+-.+-.++....++......|...+++++|+.+|+++.....
T Consensus 194 ~~P~~-~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 194 EDPER-LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred CCchH-HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 34443 77888899999999999999999999987721222233455555555566678899999999999999986533
Q ss_pred CCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCC------CCCcccHHHHHHHHHcCCChHHHHHHhhhC-
Q 003082 145 APLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP------VKELDEEFRIVQLCVNKPDVNLAIRYACIV- 217 (850)
Q Consensus 145 ~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 217 (850)
..-...++....++.+++..|.++|++++|...++..+..... +.-...+..++..|...+.+++|..++...
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 2222345566778888889999999999999998877654321 112223344555566666666666555431
Q ss_pred ------CC-----CcchHHHHHHHHHhcCChHHHHHHHHHHHhCC----C--CC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 003082 218 ------PR-----ADILFCNFVREFGKKRDLVSALRAYDASKKHL----S--SP-NMYICRTIIDVCGICGDYMKSRAIY 279 (850)
Q Consensus 218 ------p~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~--~p-~~~~~~~li~~~~~~g~~~~A~~~~ 279 (850)
|. -.-++++|...|..+|++++|+++|+.++... . .+ ....++.|...|.+.+++.+|.++|
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~ 432 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLF 432 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHH
Confidence 11 11345556666666666666666665554321 1 11 1233555555555566666666665
Q ss_pred HHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhh
Q 003082 280 EDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLG--VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355 (850)
Q Consensus 280 ~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g--~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~ 355 (850)
.+.. .+ |+..| .+-...+|..|...|...|++++|.++.+.+....+
T Consensus 433 ~~~~--------------------------~i---~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~ 481 (508)
T KOG1840|consen 433 EEAK--------------------------DI---MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNARE 481 (508)
T ss_pred HHHH--------------------------HH---HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 5432 22 22223 233456899999999999999999999888775433
No 37
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.33 E-value=2.4e-07 Score=98.90 Aligned_cols=469 Identities=10% Similarity=0.027 Sum_probs=275.8
Q ss_pred hhhccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHH
Q 003082 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (850)
Q Consensus 59 ~l~~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~ 138 (850)
+-+++.+-|.| .+.+. +|++...|+.|...++.+.+. -|......+....+.. .+|+.+.+..+.++
T Consensus 399 L~rAveccp~s-~dLwl----AlarLetYenAkkvLNkaRe~--iptd~~IWitaa~LEE------~ngn~~mv~kii~r 465 (913)
T KOG0495|consen 399 LERAVECCPQS-MDLWL----ALARLETYENAKKVLNKAREI--IPTDREIWITAAKLEE------ANGNVDMVEKIIDR 465 (913)
T ss_pred HHHHHHhccch-HHHHH----HHHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHH------hcCCHHHHHHHHHH
Confidence 44578888888 66665 456667889999999988876 3444334444444433 56777777777666
Q ss_pred HHHc----CCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCC-CCcccHHHHHHHHHcCCChHHHHHH
Q 003082 139 LNEL----GVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPV-KELDEEFRIVQLCVNKPDVNLAIRY 213 (850)
Q Consensus 139 ~~~~----~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~ 213 (850)
.+.. |+..+ .+.+++-+...-..|-.--+..+....+..|..- +....|..-...|.+.+..+-|..+
T Consensus 466 gl~~L~~ngv~i~-------rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAV 538 (913)
T KOG0495|consen 466 GLSELQANGVEIN-------RDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAV 538 (913)
T ss_pred HHHHHhhcceeec-------HHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHH
Confidence 5432 33333 3344444444444555555555555555555432 2233455566666666666666655
Q ss_pred hhh----CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc
Q 003082 214 ACI----VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL 289 (850)
Q Consensus 214 ~~~----~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 289 (850)
|.. +|.....|...+..=-..|..++-..+|++.... .+-....|-....-+...|+...|..++.+..+....
T Consensus 539 ya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn- 616 (913)
T KOG0495|consen 539 YAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN- 616 (913)
T ss_pred HHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-
Confidence 433 4555566666655555566666666666666654 2233444555555566667777777776666654221
Q ss_pred CHHHHHHHHHh--hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCH-hHH
Q 003082 290 NIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-FTY 366 (850)
Q Consensus 290 d~~t~~~ll~~--~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~-~ty 366 (850)
+...|-.-+.. ....++.|..+|.+.... .|+..+|.--++.-.-.+..++|.+++++..+ .-|+- ..|
T Consensus 617 seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk------~fp~f~Kl~ 688 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALK------SFPDFHKLW 688 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH------hCCchHHHH
Confidence 33444444443 334666676666666543 35555555555555556667777777766655 23442 345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 003082 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446 (850)
Q Consensus 367 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~ 446 (850)
-.+-..+-+.++++.|...|..-.+. ++-.+-.|-.|...=-+.|.+-.|..+|+...-.+ +-+...|-..|.+=.+.
T Consensus 689 lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~ 766 (913)
T KOG0495|consen 689 LMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRA 766 (913)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHc
Confidence 55555666667777776666554332 22234455555555566667777777777666553 44556666667777777
Q ss_pred CCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHh
Q 003082 447 CQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC 526 (850)
Q Consensus 447 g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~ 526 (850)
|..+.|..++.+.... ++.+...|..-|....
T Consensus 767 gn~~~a~~lmakALQe------------------------------------------------cp~sg~LWaEaI~le~ 798 (913)
T KOG0495|consen 767 GNKEQAELLMAKALQE------------------------------------------------CPSSGLLWAEAIWLEP 798 (913)
T ss_pred CCHHHHHHHHHHHHHh------------------------------------------------CCccchhHHHHHHhcc
Confidence 7777776666554432 1222223333332222
Q ss_pred ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003082 527 TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLF 606 (850)
Q Consensus 527 ~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~ 606 (850)
....+ -...+.+++ +.-|..+.-++...|....++++|.+.|.+..+.+ +-+-.+|.-+..-+.++|.-++-.+++
T Consensus 799 ~~~rk-Tks~DALkk--ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~ 874 (913)
T KOG0495|consen 799 RPQRK-TKSIDALKK--CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVL 874 (913)
T ss_pred Ccccc-hHHHHHHHh--ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHH
Confidence 11000 011123333 34566777777788888888999999999998754 334568888888899999888888888
Q ss_pred HHHHH
Q 003082 607 EEMKH 611 (850)
Q Consensus 607 ~~m~~ 611 (850)
.....
T Consensus 875 ~~c~~ 879 (913)
T KOG0495|consen 875 KKCET 879 (913)
T ss_pred HHHhc
Confidence 87765
No 38
>PF13041 PPR_2: PPR repeat family
Probab=99.33 E-value=3.3e-12 Score=93.34 Aligned_cols=50 Identities=36% Similarity=0.618 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003082 581 PDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSR 630 (850)
Q Consensus 581 pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~~ 630 (850)
||.++||++|.+|++.|++++|.++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666653
No 39
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.32 E-value=1.3e-11 Score=128.85 Aligned_cols=225 Identities=17% Similarity=0.121 Sum_probs=101.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh--h
Q 003082 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--N 301 (850)
Q Consensus 224 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~--~ 301 (850)
|..+.......++++.|+..|+++...+.. +...+..++.. ...+++++|.++++...+.. ++...+...+.. .
T Consensus 47 ~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~ 122 (280)
T PF13429_consen 47 WRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYR 122 (280)
T ss_dssp ---------------------------------------------------------------------------H-HHH
T ss_pred cccccccccccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHH
Confidence 333445555566666666666666654332 44455555555 46666666666666554432 333333444433 2
Q ss_pred cCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCccc-CHhHHHHHHHHHHhcCCH
Q 003082 302 AHDLKFTLEVYKNMQKL-GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWW 379 (850)
Q Consensus 302 ~~~~~~a~~l~~~m~~~-g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~-d~~ty~~li~~~~~~g~~ 379 (850)
.++++.+.++++.+... ..+.+...|..+...+.+.|+.++|.+.|++..+. .| |....+.++..+...|+.
T Consensus 123 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~------~P~~~~~~~~l~~~li~~~~~ 196 (280)
T PF13429_consen 123 LGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL------DPDDPDARNALAWLLIDMGDY 196 (280)
T ss_dssp TT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-------TT-HHHHHHHHHHHCTTCHH
T ss_pred HhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHCCCh
Confidence 35666666666665542 23567778888888899999999999999998873 45 477788889999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003082 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (850)
Q Consensus 380 ~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m 459 (850)
+++..++....+.. ..|...+..+..+|...|+.++|+.+|++..+.. +.|......+.+++...|+.++|.++.++.
T Consensus 197 ~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 197 DEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred HHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 99888888877654 3456678888999999999999999999988763 457778888899999999999999888765
Q ss_pred h
Q 003082 460 T 460 (850)
Q Consensus 460 ~ 460 (850)
.
T Consensus 275 ~ 275 (280)
T PF13429_consen 275 L 275 (280)
T ss_dssp -
T ss_pred c
Confidence 4
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.30 E-value=8.5e-09 Score=112.72 Aligned_cols=62 Identities=15% Similarity=0.161 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003082 547 NHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (850)
Q Consensus 547 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~ 610 (850)
|...+..+...|.+.|++++|.+.|+.+.+. .|+...|-.+...+.+.|+.++|.+++++-.
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445556666666666666666666666653 5666666666666666666666666666543
No 41
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=1.2e-08 Score=105.27 Aligned_cols=356 Identities=11% Similarity=0.019 Sum_probs=198.0
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+....+.+-++|.|++|++.|..++...++ ... .+.+....|...|+|+++++.--+++ .+.|+-
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~--epi------FYsNraAcY~~lgd~~~Vied~TkAL--El~P~Y-- 182 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPD--EPI------FYSNRAACYESLGDWEKVIEDCTKAL--ELNPDY-- 182 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCC--Cch------hhhhHHHHHHHHhhHHHHHHHHHHHh--hcCcHH--
Confidence 455667778888999999999999999988544 211 12334445667899999999988888 567764
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh-CCCCcchHHHHHH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI-VPRADILFCNFVR 229 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~p~~~~~~~~li~ 229 (850)
.-+++..+..+-..|++.+|+.=.....-.+-..+.. ...++...++.--...+.+-+.. -++.-. ..+.|.
T Consensus 183 ----~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s--~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lP-S~~fi~ 255 (606)
T KOG0547|consen 183 ----VKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNAS--IEPMAERVLKKQAMKKAKEKLKENRPPVLP-SATFIA 255 (606)
T ss_pred ----HHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccch--hHHHHHHHHHHHHHHHHHHhhcccCCCCCC-cHHHHH
Confidence 4456666666777788888875443332221111110 11111111111111122222221 111111 111222
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCC-CCcC-------------
Q 003082 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC-----GDYMKSRAIYEDLRSQN-VTLN------------- 290 (850)
Q Consensus 230 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g-~~pd------------- 290 (850)
.|...=.-+- .+ .+.. +.......+..++... ..|..|.+.+.+-.... ..++
T Consensus 256 syf~sF~~~~---~~-~~~~----~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~ 327 (606)
T KOG0547|consen 256 SYFGSFHADP---KP-LFDN----KSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAE 327 (606)
T ss_pred HHHhhccccc---cc-cccC----CCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHH
Confidence 2221100000 00 0000 0001111111111110 12333333332211100 0011
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHH
Q 003082 291 IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370 (850)
Q Consensus 291 ~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li 370 (850)
...+...+....|+.-.+.+-|+..++....++ ..|--+..+|....+.++-+..|....++. +-|..+|..-.
T Consensus 328 al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-----p~n~dvYyHRg 401 (606)
T KOG0547|consen 328 ALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-----PENPDVYYHRG 401 (606)
T ss_pred HHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-----CCCCchhHhHH
Confidence 011112222345677778888888877543222 226667777888888888888888887742 23455677666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHH
Q 003082 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450 (850)
Q Consensus 371 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 450 (850)
..+.-.+++++|..=|++..+.... ++..|--+--+..+.+.+++++..|++.+++ ++-.+.+|+.....+...++++
T Consensus 402 Qm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd 479 (606)
T KOG0547|consen 402 QMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFD 479 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHH
Confidence 7777778888888888888776543 5666776766777888888888888888776 4556677888888888888888
Q ss_pred HHHHHHHHHhh
Q 003082 451 RAFRLFRSWTL 461 (850)
Q Consensus 451 ~A~~l~~~m~~ 461 (850)
.|.+.|+...+
T Consensus 480 ~A~k~YD~ai~ 490 (606)
T KOG0547|consen 480 KAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHHh
Confidence 88888876554
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.29 E-value=4.1e-09 Score=115.89 Aligned_cols=285 Identities=10% Similarity=-0.049 Sum_probs=200.3
Q ss_pred hhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcc-cHHHHHHHHH
Q 003082 124 IREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELD-EEFRIVQLCV 202 (850)
Q Consensus 124 ~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~ 202 (850)
...|+++.|.+.+.+..+ ..|+. .-.++-++.....+|++++|.+.+++..+.. |+... .....+..+.
T Consensus 95 ~~~g~~~~A~~~l~~~~~--~~~~~------~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l 164 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNAD--HAAEP------VLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILL 164 (409)
T ss_pred HhCCCHHHHHHHHHHHhh--cCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHH
Confidence 478999999999998874 35543 2233344555667899999999999987644 44432 2333578889
Q ss_pred cCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhcCCHHHH
Q 003082 203 NKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVC---GICGDYMKS 275 (850)
Q Consensus 203 ~~~~~~~A~~~~~~----~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~---~~~g~~~~A 275 (850)
..|+++.|+..++. .|.+..++..+...|...|++++|.+.+..+.+.+..+.......-..++ ...+..+++
T Consensus 165 ~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~ 244 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEG 244 (409)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999988766 48888889999999999999999999999999886543222211111211 223333333
Q ss_pred HHHHHHHHhCCCC---cCHHHHHHHHHh--hcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHHcCChHHHHHHH
Q 003082 276 RAIYEDLRSQNVT---LNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMAS---YNILLKACCLAGNTVLAQEIY 347 (850)
Q Consensus 276 ~~~~~~m~~~g~~---pd~~t~~~ll~~--~~~~~~~a~~l~~~m~~~g~~pd~~t---~~~Ll~~~~~~g~~~~A~~i~ 347 (850)
.+.+..+.+.... .+...+..+... ..|+.+.|.+++++..+.. ||... .....-.....++.+.+.+.+
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 4455555543211 244555555444 5689999999999998864 34332 122222233457788888888
Q ss_pred HHHHHhhhcCCcccC-H--hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003082 348 GEVKHLEAKGVLKLD-V--FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424 (850)
Q Consensus 348 ~~m~~~~~~g~~~~d-~--~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m 424 (850)
+...+. .|+ . ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 323 e~~lk~------~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 323 EKQAKN------VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHh------CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 877762 344 3 5567888999999999999999996444445789999999999999999999999999986
Q ss_pred HH
Q 003082 425 LQ 426 (850)
Q Consensus 425 ~~ 426 (850)
..
T Consensus 397 l~ 398 (409)
T TIGR00540 397 LG 398 (409)
T ss_pred HH
Confidence 53
No 43
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=8.2e-12 Score=91.23 Aligned_cols=50 Identities=28% Similarity=0.557 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 003082 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR 595 (850)
Q Consensus 546 p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~ 595 (850)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+++|++||+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999985
No 44
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.26 E-value=4.4e-11 Score=124.75 Aligned_cols=225 Identities=15% Similarity=0.176 Sum_probs=50.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh-hcC
Q 003082 226 NFVREFGKKRDLVSALRAYDASKKHL-SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-NAH 303 (850)
Q Consensus 226 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~-~~~ 303 (850)
.+...+.+.|++++|+++++...... .+.|...|..+...+...++++.|.+.|+++...+.. +...+..++.. ..+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQLLQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccc
Confidence 34666677777777777775544332 2234445555666666677777777777777654322 22223333332 233
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHH
Q 003082 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (850)
Q Consensus 304 ~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~ 383 (850)
++++|.+++....+.. ++...+..++..+.+.++++++.++++.+... ...+.+...|..+...+.+.|+.++|+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEEL---PAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH----T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4444544444433221 23333444444445555555555555444321 112233444444444444455555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003082 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (850)
Q Consensus 384 ~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~ 458 (850)
+.+++.++.... |....+.++..+...|+.+++..+++...+.. +.|...+..+..+|...|+.++|...|+.
T Consensus 167 ~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 167 RDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp HHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccc
Confidence 555444443211 23444444444444444444444444444332 22333344444444444444444444443
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.26 E-value=2.2e-09 Score=115.17 Aligned_cols=255 Identities=12% Similarity=0.133 Sum_probs=118.5
Q ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHhCC-CCCCCcccHHHHHHHHHcCCCh-HHHHHHhhhCCCCcchHHHHHHHHHhcC
Q 003082 158 LKNECQRLLDSGEVEMFVGLMEVLEEFR-LPVKELDEEFRIVQLCVNKPDV-NLAIRYACIVPRADILFCNFVREFGKKR 235 (850)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~p~~~~~~~~li~~~~~~g 235 (850)
+.+++..|.+.+++++|..+|+.+.+.. ...++...+..++--+-+.-.. -.|..+.+..|..+.+|+.+++.|.-++
T Consensus 356 l~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQk 435 (638)
T KOG1126|consen 356 LSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQK 435 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhh
Confidence 4445555566666666666666655432 1223333333333222111111 1233334444555566666666666666
Q ss_pred ChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh-----hcCChHHHH
Q 003082 236 DLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-----NAHDLKFTL 309 (850)
Q Consensus 236 ~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~-----~~~~~~~a~ 309 (850)
+.+.|++.|++.++. .| ..++|+.+..=+.....+|.|...|+..+ ..|...||+.... ..++++.|.
T Consensus 436 dh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~~~rhYnAwYGlG~vy~Kqek~e~Ae 509 (638)
T KOG1126|consen 436 DHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GVDPRHYNAWYGLGTVYLKQEKLEFAE 509 (638)
T ss_pred HHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh----cCCchhhHHHHhhhhheeccchhhHHH
Confidence 666666666666653 23 45556665555555666666666665544 3344444443321 123444444
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003082 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389 (850)
Q Consensus 310 ~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m 389 (850)
-.|+...+.+ +-+.+....+...+-+.|+.|+|+++|++...+. +-|...--.....+...+++++|+..++++
T Consensus 510 ~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-----~kn~l~~~~~~~il~~~~~~~eal~~LEeL 583 (638)
T KOG1126|consen 510 FHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-----PKNPLCKYHRASILFSLGRYVEALQELEEL 583 (638)
T ss_pred HHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-----CCCchhHHHHHHHHHhhcchHHHHHHHHHH
Confidence 4444444433 2233334444444444455555555555444321 112222222233344444455555555554
Q ss_pred HHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 390 LSAGVTP-NTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (850)
Q Consensus 390 ~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 426 (850)
++. .| +...|..+...|-+.|+.+.|+.-|..+.+
T Consensus 584 k~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 584 KEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 442 22 233344444444444555555444444443
No 46
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.26 E-value=1.5e-06 Score=89.51 Aligned_cols=417 Identities=12% Similarity=0.104 Sum_probs=300.3
Q ss_pred hhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCChHHHH
Q 003082 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSAL 241 (850)
Q Consensus 166 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~p~~~~~~~~li~~~~~~g~~~~A~ 241 (850)
..++++..|..++++.+... -.+...|..-+..=.+......|..+++. +|..+..|+--+.+=...|+...|.
T Consensus 84 esq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHH
Confidence 45677788888888887654 44556666666666677777778777655 5777788888888888899999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh--hcCChHHHHHHHHHHHHc-
Q 003082 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKL- 318 (850)
Q Consensus 242 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~--~~~~~~~a~~l~~~m~~~- 318 (850)
++|++-.+ ..|+...|++.|+.=.+.+.++.|..+|+...-- .|++.+|---... ..|....+..+|....+.
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 99998877 5799999999999999999999999999998753 5888888766654 567888888888877653
Q ss_pred CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccC--HhHHHHHHHHHHhcCCH---HHHHHH-----HH
Q 003082 319 GV-MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADAKWW---QMALKV-----KE 387 (850)
Q Consensus 319 g~-~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d--~~ty~~li~~~~~~g~~---~~A~~l-----~~ 387 (850)
|- ..+...+++....=.++..++.|.-+|.-.... ++.+ ...|..+...=-+-|+. +++.-- ++
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-----~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE 312 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-----IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYE 312 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHH
Confidence 21 112233444444444677888999999877763 2222 34455555444444554 444322 34
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHH-----HHH---HHhCCHHHHHHHHH
Q 003082 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ--CCNILL-----QAC---VEACQFDRAFRLFR 457 (850)
Q Consensus 388 ~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--~~~~ll-----~~~---~~~g~~~~A~~l~~ 457 (850)
.+.+.+ ..|-.+|-..++.-...|+.+...++|+..+.. ++|-.. .|.-.| -+| ....+.+.+.++|+
T Consensus 313 ~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 313 KEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 445444 337778888888888899999999999999875 444221 121111 111 24578888888887
Q ss_pred HHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhc------cHHH
Q 003082 458 SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT------DYYR 531 (850)
Q Consensus 458 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~------~~~~ 531 (850)
...+. ++...+||.-+--.|+. ++..
T Consensus 391 ~~l~l------------------------------------------------IPHkkFtFaKiWlmyA~feIRq~~l~~ 422 (677)
T KOG1915|consen 391 ACLDL------------------------------------------------IPHKKFTFAKIWLMYAQFEIRQLNLTG 422 (677)
T ss_pred HHHhh------------------------------------------------cCcccchHHHHHHHHHHHHHHHcccHH
Confidence 76542 45667788777666652 5788
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 532 VKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (850)
Q Consensus 532 a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 611 (850)
|.+++.... |..|-..+|-..|..=.+.++++.+..++++..+.+ +-|..+|.-....=...|+.+.|..+|+-..+
T Consensus 423 ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 423 ARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred HHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 998888765 568999999999999999999999999999999865 33677888877777788999999999999887
Q ss_pred CC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 003082 612 YQ-IQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649 (850)
Q Consensus 612 ~g-~~p~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~ 649 (850)
.. +..-...|.+.|+-=...|.++. +..+|+++.+
T Consensus 500 qp~ldmpellwkaYIdFEi~~~E~ek---aR~LYerlL~ 535 (677)
T KOG1915|consen 500 QPALDMPELLWKAYIDFEIEEGEFEK---ARALYERLLD 535 (677)
T ss_pred CcccccHHHHHHHhhhhhhhcchHHH---HHHHHHHHHH
Confidence 42 22345666777766667787666 6668888876
No 47
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.25 E-value=3.5e-10 Score=123.92 Aligned_cols=254 Identities=17% Similarity=0.207 Sum_probs=162.9
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003082 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389 (850)
Q Consensus 310 ~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m 389 (850)
.++-.+...|+.||.+||..||.-||..|+++.|- +|.-|+- +. +..+...++.++.+...+++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~---ks-Lpv~e~vf~~lv~sh~~And~Enpk------ 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEI---KS-LPVREGVFRGLVASHKEANDAENPK------ 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhc---cc-ccccchhHHHHHhcccccccccCCC------
Confidence 34555666777777777777777777777777777 7766653 12 4556667777777777777766555
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHH----cCC-----------------CCCHHHHHHHHHHHHH
Q 003082 390 LSAGVTPNTITWSSLINACANAGLVEQ---AMHLFEEMLQ----AGC-----------------EPNSQCCNILLQACVE 445 (850)
Q Consensus 390 ~~~g~~p~~~ty~~li~~~~~~g~~~~---A~~l~~~m~~----~g~-----------------~p~~~~~~~ll~~~~~ 445 (850)
.|...||+.|..+|...||+.. ..+.+..+.. .|+ -||..+ .+....-
T Consensus 80 -----ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~ 151 (1088)
T KOG4318|consen 80 -----EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVL 151 (1088)
T ss_pred -----CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHH
Confidence 5677777777777777777544 2221111111 121 122111 1222233
Q ss_pred hCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHH
Q 003082 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC 525 (850)
Q Consensus 446 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~ 525 (850)
.|-++.+.+++..+..... ..|-.+ ++.-+
T Consensus 152 eglwaqllkll~~~Pvsa~----------------------------------------------~~p~~v----fLrqn 181 (1088)
T KOG4318|consen 152 EGLWAQLLKLLAKVPVSAW----------------------------------------------NAPFQV----FLRQN 181 (1088)
T ss_pred HHHHHHHHHHHhhCCcccc----------------------------------------------cchHHH----HHHHh
Confidence 4445555554443321110 011111 23333
Q ss_pred hccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003082 526 CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSL 605 (850)
Q Consensus 526 ~~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l 605 (850)
.....-.+++.+......-.|+..+|.++++.-.-.|+++.|..++.+|.+.|++.+..-|..|+-+ .+...-+..+
T Consensus 182 v~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~v 258 (1088)
T KOG4318|consen 182 VVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFV 258 (1088)
T ss_pred ccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHH
Confidence 3322333334333322211589999999999999999999999999999999999999888888877 8888889999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 003082 606 FEEMKHYQIQPNLVTYITLLRARSRYGSLH 635 (850)
Q Consensus 606 ~~~m~~~g~~p~~~t~~~li~a~~~~g~~~ 635 (850)
.+-|.+.|+.|+..|+...+-.+...|...
T Consensus 259 lrgmqe~gv~p~seT~adyvip~l~N~~t~ 288 (1088)
T KOG4318|consen 259 LRGMQEKGVQPGSETQADYVIPQLSNGQTK 288 (1088)
T ss_pred HHHHHHhcCCCCcchhHHHHHhhhcchhhh
Confidence 999999999999999999988888765533
No 48
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.24 E-value=7e-07 Score=95.76 Aligned_cols=427 Identities=14% Similarity=0.058 Sum_probs=270.0
Q ss_pred hcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcC
Q 003082 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK 204 (850)
Q Consensus 125 ~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (850)
..+++...+.+.+.+++ -.|++ -++++-.+..+...|+-++|......-+... +.+.++|..++-.+-..
T Consensus 19 E~kQYkkgLK~~~~iL~--k~~eH------geslAmkGL~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK--KFPEH------GESLAMKGLTLNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHhHHHHHHHHHH--hCCcc------chhHHhccchhhcccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhh
Confidence 56888888888888886 35554 2233333444556799999999888766544 77889999999999999
Q ss_pred CChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003082 205 PDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280 (850)
Q Consensus 205 ~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 280 (850)
.+|++|++.|..+ |++..++..|.-.-.+.|+++.......+..+.. +.....|..++.++.-.|++..|..+++
T Consensus 89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ 167 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILE 167 (700)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998764 6677888888888888999999999888888742 2345568888888889999999999999
Q ss_pred HHHhCCC-CcCHHHHHHHHH--------hhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHH
Q 003082 281 DLRSQNV-TLNIYVFNSLMN--------VNAHDLKFTLEVYKNMQKLGVMADMA-SYNILLKACCLAGNTVLAQEIYGEV 350 (850)
Q Consensus 281 ~m~~~g~-~pd~~t~~~ll~--------~~~~~~~~a~~l~~~m~~~g~~pd~~-t~~~Ll~~~~~~g~~~~A~~i~~~m 350 (850)
+..+... .|+...|..... ..+|..+.|++.+..-... ..|-. .--+-...+.+.+++++|..+|..+
T Consensus 168 ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L 245 (700)
T KOG1156|consen 168 EFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRL 245 (700)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHH
Confidence 9887642 355554433222 2345666666655544332 12322 2234456677888999999999888
Q ss_pred HHhhhcCCcccCHhHHHHH-HHHHHhcCCHHHHH-HHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003082 351 KHLEAKGVLKLDVFTYSTI-VKVFADAKWWQMAL-KVKEDMLSAG---VTPNTITWSSLINACANAGLVEQAMHLFEEML 425 (850)
Q Consensus 351 ~~~~~~g~~~~d~~ty~~l-i~~~~~~g~~~~A~-~l~~~m~~~g---~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 425 (850)
.. ..||..-|.-. ..++.+-.+.-+++ .+|....+.- -.|-....+.+. .....+..-.++..+.
T Consensus 246 l~------rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~----~eel~~~vdkyL~~~l 315 (700)
T KOG1156|consen 246 LE------RNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLN----GEELKEIVDKYLRPLL 315 (700)
T ss_pred Hh------hCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhC----cchhHHHHHHHHHHHh
Confidence 76 34666655544 44444333333343 5555544321 111111111111 1122344555666777
Q ss_pred HcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCccccc
Q 003082 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505 (850)
Q Consensus 426 ~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (850)
+.|+++ ++..+...|-.-...+ ++++....-. ..+.....+.+
T Consensus 316 ~Kg~p~---vf~dl~SLyk~p~k~~----~le~Lvt~y~------------------------------~~L~~~~~f~~ 358 (700)
T KOG1156|consen 316 SKGVPS---VFKDLRSLYKDPEKVA----FLEKLVTSYQ------------------------------HSLSGTGMFNF 358 (700)
T ss_pred hcCCCc---hhhhhHHHHhchhHhH----HHHHHHHHHH------------------------------hhcccccCCCc
Confidence 777654 3444444432222111 2222211000 00000001111
Q ss_pred cccc-CCCcCHHHHHHHHHH--H--hccHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 003082 506 DKRF-SFKPTTTTYNILMKA--C--CTDYYRVKALMNEMRTVGLSPNHI-SWTILIDACGGSGNVEGALQILKIMREDGM 579 (850)
Q Consensus 506 ~~~~-~~~p~~~t~~~li~~--~--~~~~~~a~~l~~~m~~~g~~p~~~-ty~~li~~~~~~g~~~~A~~l~~~m~~~g~ 579 (850)
.... .-+|.+..|...--+ + +++.+.|...++....+ .|+.+ .|..=...+.+.|++++|..++++..+..
T Consensus 359 ~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD- 435 (700)
T KOG1156|consen 359 LDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD- 435 (700)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-
Confidence 1111 125666555543332 2 36789999999988774 56654 66666788999999999999999998865
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003082 580 SPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQI 614 (850)
Q Consensus 580 ~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~ 614 (850)
.||...=..-.+-..++++.++|.++.....+.|.
T Consensus 436 ~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 436 TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 45666555677778889999999999999988775
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.23 E-value=2.2e-09 Score=115.12 Aligned_cols=299 Identities=10% Similarity=-0.013 Sum_probs=216.0
Q ss_pred hhHHHHHHHHHhhc--CChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcc
Q 003082 71 NDYYADMASKLAKD--GRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLE 148 (850)
Q Consensus 71 ~~~~~~l~~~l~~~--g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~ 148 (850)
...+..++..|... =..++|+.+|+.......+- -..+..+-.+|...+++++|..+|+.+. .+.|-.
T Consensus 317 ~~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt--------~wvl~q~GrayFEl~~Y~~a~~~F~~~r--~~~p~r 386 (638)
T KOG1126|consen 317 MELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNT--------GWVLSQLGRAYFELIEYDQAERIFSLVR--RIEPYR 386 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCc--------hHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcccc
Confidence 34455555555433 45678999999855552221 1223345567889999999999999999 557765
Q ss_pred ccchhhhHHHHHHHHhhhhcCcHHHHHHHHHH-HHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcch
Q 003082 149 LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEV-LEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADIL 223 (850)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~ 223 (850)
.....++.+.+ .++ .+ +-++..+.+ +... .|+.+.+|-.++..|.-+++.+.|++.|+++ |....+
T Consensus 387 v~~meiyST~L---WHL---q~-~v~Ls~Laq~Li~~--~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYa 457 (638)
T KOG1126|consen 387 VKGMEIYSTTL---WHL---QD-EVALSYLAQDLIDT--DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYA 457 (638)
T ss_pred ccchhHHHHHH---HHH---Hh-hHHHHHHHHHHHhh--CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchh
Confidence 55544454443 332 22 233444433 3333 3788899999999999999999999999885 667788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH-HHH--HHHHHh
Q 003082 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI-YVF--NSLMNV 300 (850)
Q Consensus 224 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~--~~ll~~ 300 (850)
|+.++.-+....++|.|...|...+.... .+-.+|--|.-.|.+.++++.|+-.|+...+.+ |.. +.. ...+.-
T Consensus 458 yTLlGhE~~~~ee~d~a~~~fr~Al~~~~-rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~ 534 (638)
T KOG1126|consen 458 YTLLGHESIATEEFDKAMKSFRKALGVDP-RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQH 534 (638)
T ss_pred hhhcCChhhhhHHHHhHHHHHHhhhcCCc-hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHH
Confidence 99999999999999999999998876321 133355567778999999999999999988653 432 222 222223
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccC-HhHHHHHHHHHHhcCCH
Q 003082 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWW 379 (850)
Q Consensus 301 ~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d-~~ty~~li~~~~~~g~~ 379 (850)
..|+.++|+++|++...... -|+..--.-...+...++.++|+..++++++ +.|+ ...|-.+...|-+.|+.
T Consensus 535 ~~k~~d~AL~~~~~A~~ld~-kn~l~~~~~~~il~~~~~~~eal~~LEeLk~------~vP~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 535 QLKRKDKALQLYEKAIHLDP-KNPLCKYHRASILFSLGRYVEALQELEELKE------LVPQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred HhhhhhHHHHHHHHHHhcCC-CCchhHHHHHHHHHhhcchHHHHHHHHHHHH------hCcchHHHHHHHHHHHHHHccc
Confidence 45789999999999988763 3554444566677788999999999999998 4455 56788888999999999
Q ss_pred HHHHHHHHHHHHCCCCCCH
Q 003082 380 QMALKVKEDMLSAGVTPNT 398 (850)
Q Consensus 380 ~~A~~l~~~m~~~g~~p~~ 398 (850)
+.|+.-|..+.+...++..
T Consensus 608 ~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 608 DLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hHHHHhhHHHhcCCCccch
Confidence 9999999999887655443
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=6.7e-07 Score=92.04 Aligned_cols=323 Identities=13% Similarity=0.101 Sum_probs=192.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH--
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-- 299 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~-- 299 (850)
..++..+..+-+.|..+.|+..|...... .| ..|.+-+....-.-+.+.+..+.. |...|.......+.
T Consensus 165 fllYL~Gvv~k~~~~~s~A~~sfv~~v~~--~P--~~W~AWleL~~lit~~e~~~~l~~-----~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 165 FLLYLYGVVLKELGLLSLAIDSFVEVVNR--YP--WFWSAWLELSELITDIEILSILVV-----GLPSDMHWMKKFFLKK 235 (559)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHhc--CC--cchHHHHHHHHhhchHHHHHHHHh-----cCcccchHHHHHHHHH
Confidence 44555566777788888888888877653 12 233333332222223333322221 11222111111111
Q ss_pred hhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcC
Q 003082 300 VNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377 (850)
Q Consensus 300 ~~~--~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g 377 (850)
++. +..+++++-...+...|++-+...-+....+.-...+++.|+.+|+++.+.. .- ---|..+|+.++ |.++.
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-PY-Rl~dmdlySN~L--Yv~~~ 311 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-PY-RLDDMDLYSNVL--YVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CC-cchhHHHHhHHH--HHHhh
Confidence 221 3666777777777777776555555555555666778888888888887621 11 012556777766 33433
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 003082 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457 (850)
Q Consensus 378 ~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~ 457 (850)
+-.- ..+.+-...--+--..|..++.+-|+-.++.+.|...|+..++.+ +-....|+.|-+-|....+...|.+-++
T Consensus 312 ~skL--s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 KSKL--SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hHHH--HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 2221 111111111012234567777777777888888888888887753 3344567777788888888888888887
Q ss_pred HHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHh--ccHHHHHHH
Q 003082 458 SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKAL 535 (850)
Q Consensus 458 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~--~~~~~a~~l 535 (850)
...+-. +.|-..|-.+-.+|. +-..-|.-.
T Consensus 389 rAvdi~------------------------------------------------p~DyRAWYGLGQaYeim~Mh~YaLyY 420 (559)
T KOG1155|consen 389 RAVDIN------------------------------------------------PRDYRAWYGLGQAYEIMKMHFYALYY 420 (559)
T ss_pred HHHhcC------------------------------------------------chhHHHHhhhhHHHHHhcchHHHHHH
Confidence 665421 345555555555554 234455555
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 536 MNEMRTVGLSP-NHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (850)
Q Consensus 536 ~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 611 (850)
|++..+ ++| |...|.+|.++|.+.+++++|++.|......| ..+...|..|.+.|-+.++..+|...|++-.+
T Consensus 421 fqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 421 FQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 666555 445 56688888888888888888888888877765 23557777788888888888888777776554
No 51
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.21 E-value=6.3e-08 Score=106.71 Aligned_cols=544 Identities=14% Similarity=0.123 Sum_probs=287.3
Q ss_pred ccchhhccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHH
Q 003082 56 QTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGV 135 (850)
Q Consensus 56 ~~~~l~~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 135 (850)
+++..+.....|+. .+|.+++..||..|+.+.|- +|.-|.-...... -......+.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnR--vtyqsLiarYc~~gdieaat-if~fm~~ksLpv~-------e~vf~~lv~sh~~And~Enpk-- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNR--VTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVR-------EGVFRGLVASHKEANDAENPK-- 79 (1088)
T ss_pred HHHHHHHhcCCCch--hhHHHHHHHHcccCCCcccc-chhhhhccccccc-------chhHHHHHhcccccccccCCC--
Confidence 44566677888884 88999999999999999998 7776654321111 111111222222333332221
Q ss_pred HHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHH-HHhC--CCC------------------CCCcccH
Q 003082 136 LKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEV-LEEF--RLP------------------VKELDEE 194 (850)
Q Consensus 136 l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~-~~~~--~~~------------------~~~~~~~ 194 (850)
.|. -+++.++...|...|+..- ++..++ |... .+. |......
T Consensus 80 ---------ep~-------aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda 142 (1088)
T KOG4318|consen 80 ---------EPL-------ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA 142 (1088)
T ss_pred ---------CCc-------hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH
Confidence 121 2334444444555666543 222222 2111 111 2122222
Q ss_pred HHHHHHHHcCCChHHHHHHhhhCCCCcch--HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 003082 195 FRIVQLCVNKPDVNLAIRYACIVPRADIL--FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY 272 (850)
Q Consensus 195 ~~l~~~~~~~~~~~~A~~~~~~~p~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 272 (850)
.+.+...+-.|-++.+++.....|..... +...+.-.... +....++.+......-.|+..+|.++++.-.-.|+.
T Consensus 143 ~n~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~ 220 (1088)
T KOG4318|consen 143 ENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDV 220 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCch
Confidence 34455556677778888877777654311 11112222222 223333433333321248999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003082 273 MKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (850)
Q Consensus 273 ~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~ 352 (850)
+.|..++.+|.+.|+..+.+-|-.|+.+ .++..-+..++.-|...|+.|+..|+...+-.+.++|....+.+..+.-
T Consensus 221 d~Ak~ll~emke~gfpir~HyFwpLl~g-~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~-- 297 (1088)
T KOG4318|consen 221 DGAKNLLYEMKEKGFPIRAHYFWPLLLG-INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLA-- 297 (1088)
T ss_pred hhHHHHHHHHHHcCCCcccccchhhhhc-CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchh--
Confidence 9999999999999999999888888877 7788888899999999999999999999888888866633332221100
Q ss_pred hhhcCCcccCHhHHHHHHHHHHhcCCHHH-----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003082 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQM-----ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (850)
Q Consensus 353 ~~~~g~~~~d~~ty~~li~~~~~~g~~~~-----A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 427 (850)
.......+..+.++...+.+++. ....+.+..-.|+.-....|...+. ...+|.-++..++-..|..-
T Consensus 298 ------hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~np 370 (1088)
T KOG4318|consen 298 ------HGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNP 370 (1088)
T ss_pred ------hhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCC
Confidence 01123344444444322222222 2333333333454444444544333 33467777777777766532
Q ss_pred C--CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhh-hhhhcccc-cCCCCCcCCCcc
Q 003082 428 G--CEP-NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM-EHKDKQSI-TNTPNFVPNSHY 502 (850)
Q Consensus 428 g--~~p-~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~ 502 (850)
- ..+ ++..|..++.-|.+.-+..-...++. ...+.....+.. .+....+. ....+++. ....+...+ ..
T Consensus 371 t~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~--~~qgls~~l~se---~tp~vsell~~lrkns~lr~lv~Lss~-El 444 (1088)
T KOG4318|consen 371 TLRDSGQNVDAFGALLRQYFRRIERHICSRIYY--AGQGLSLNLNSE---DTPRVSELLENLRKNSFLRQLVGLSST-EL 444 (1088)
T ss_pred ccccCcchHHHHHHHHHHHHHHHHhhHHHHHHH--HHHHHHhhhchh---hhHHHHHHHHHhCcchHHHHHhhhhHH-HH
Confidence 1 222 34456666655554332222222221 000000000000 00000000 00000000 000000000 00
Q ss_pred cccccc--cCCCcCHHHHHHHHHHHhcc--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-
Q 003082 503 SSFDKR--FSFKPTTTTYNILMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED- 577 (850)
Q Consensus 503 ~~~~~~--~~~~p~~~t~~~li~~~~~~--~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~- 577 (850)
.....- ....+--..-+.++..|+.. ..++...-+..... .-| ..|..||+-++...+++.|..+.++....
T Consensus 445 er~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d 521 (1088)
T KOG4318|consen 445 ERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRD 521 (1088)
T ss_pred hcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccc
Confidence 000000 00011122234555566542 33444332222221 111 56888888888888888888888887642
Q ss_pred -CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCC
Q 003082 578 -GMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQ-IQP-NLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGY 652 (850)
Q Consensus 578 -g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p-~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~~g~ 652 (850)
.+..|..-+..+.+.+.+.+...++..++++|.+.- ..| ...++--+++.....|..+..++ +++-+...|+
T Consensus 522 ~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkk---l~d~lvslgl 596 (1088)
T KOG4318|consen 522 ESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKK---LADILVSLGL 596 (1088)
T ss_pred hhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHH---HHHHHHHhhh
Confidence 344566678888888888888888888888887621 223 25566667777777787666444 4444444444
No 52
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.21 E-value=7e-06 Score=87.91 Aligned_cols=496 Identities=14% Similarity=0.149 Sum_probs=292.2
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
+..|......+.++|+...-...|++++..-+.-. |--.+..+..-+. ..|-++-++.+|++-+ .+.|..
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtq---H~rIW~lyl~Fv~---~~~lPets~rvyrRYL--k~~P~~-- 171 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQ---HDRIWDLYLKFVE---SHGLPETSIRVYRRYL--KVAPEA-- 171 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHh---hccchHHHHHHHH---hCCChHHHHHHHHHHH--hcCHHH--
Confidence 45666677788888999999999998887632211 1111333322222 5577789999999999 567754
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCC-----CCCcccHHHHHHHHHcCC------ChHHHHHH-hhhCC
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP-----VKELDEEFRIVQLCVNKP------DVNLAIRY-ACIVP 218 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~------~~~~A~~~-~~~~p 218 (850)
.+-++. .++..+++++|.+.++.++..... +.+...|..+.....+.- +++..++- ...++
T Consensus 172 ----~eeyie---~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rft 244 (835)
T KOG2047|consen 172 ----REEYIE---YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFT 244 (835)
T ss_pred ----HHHHHH---HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCc
Confidence 222332 234679999999999887643211 334555666655554432 23332221 12223
Q ss_pred CC-cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------------------CHHHH
Q 003082 219 RA-DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG----------------------DYMKS 275 (850)
Q Consensus 219 ~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----------------------~~~~A 275 (850)
+. ...|++|.+-|.+.|.++.|..+|++.+..- .++.-|..+-++|+... +++-.
T Consensus 245 Dq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~ 322 (835)
T KOG2047|consen 245 DQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELH 322 (835)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHH
Confidence 32 2678999999999999999999999887642 34444555555555321 12233
Q ss_pred HHHHHHHHhCC-----------CCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHHcC
Q 003082 276 RAIYEDLRSQN-----------VTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMAD------MASYNILLKACCLAG 338 (850)
Q Consensus 276 ~~~~~~m~~~g-----------~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd------~~t~~~Ll~~~~~~g 338 (850)
+.-|+.+...+ -.-++.+|..-+..+.++..+-...|.+..+. +.|- ...|..+.+.|...|
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~ 401 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNG 401 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcC
Confidence 33444443321 12345556666666666777777778777653 2221 345778889999999
Q ss_pred ChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----------C-------CHHHH
Q 003082 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT----------P-------NTITW 401 (850)
Q Consensus 339 ~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~----------p-------~~~ty 401 (850)
+++.|..+|++..+..-.+ +.-=..+|..-...=.+..+++.|+++.+.....--. | +...|
T Consensus 402 ~l~~aRvifeka~~V~y~~-v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiW 480 (835)
T KOG2047|consen 402 DLDDARVIFEKATKVPYKT-VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIW 480 (835)
T ss_pred cHHHHHHHHHHhhcCCccc-hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHH
Confidence 9999999999876511000 0000224444444445667788888877665422111 1 22346
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhh
Q 003082 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481 (850)
Q Consensus 402 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~ 481 (850)
+..++.--..|-++....+++.+++..+.-.....|-.+ .+-...-++++++++++-...
T Consensus 481 s~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAm-fLEeh~yfeesFk~YErgI~L------------------- 540 (835)
T KOG2047|consen 481 SMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAM-FLEEHKYFEESFKAYERGISL------------------- 540 (835)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhhHHHHHHHHHHHcCCcc-------------------
Confidence 666666667788888888888888765432222222111 223445567777777642210
Q ss_pred hhhhhcccccCCCCCcCCCcccccccccCCCcCH-HHHHHH----HHHHhc-cHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003082 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT-TTYNIL----MKACCT-DYYRVKALMNEMRTVGLSPNHISWTILI 555 (850)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~t~~~l----i~~~~~-~~~~a~~l~~~m~~~g~~p~~~ty~~li 555 (850)
+. -|++ ..|+.. +.-|++ .++.|..+|++..+ |++|...-+--|+
T Consensus 541 ---------------------------Fk-~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLl 591 (835)
T KOG2047|consen 541 ---------------------------FK-WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLL 591 (835)
T ss_pred ---------------------------CC-CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHH
Confidence 00 2222 234443 444544 68999999999999 7777554332232
Q ss_pred HH--HHcCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH---HH
Q 003082 556 DA--CGGSGNVEGALQILKIMREDGMSPDV--VAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLR---AR 628 (850)
Q Consensus 556 ~~--~~~~g~~~~A~~l~~~m~~~g~~pd~--~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~---a~ 628 (850)
.+ =-+.|....|+.++++... ++++.. ..||..|+--...=-+.....+|++..+. -||...-...|+ .=
T Consensus 592 YA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlE 668 (835)
T KOG2047|consen 592 YAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLE 668 (835)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHh
Confidence 22 2346888999999999754 344443 46888887655544455566777777763 466544433333 23
Q ss_pred HhcCChHHHHH
Q 003082 629 SRYGSLHEVQQ 639 (850)
Q Consensus 629 ~~~g~~~~a~~ 639 (850)
++.|..+.|+.
T Consensus 669 tklGEidRARa 679 (835)
T KOG2047|consen 669 TKLGEIDRARA 679 (835)
T ss_pred hhhhhHHHHHH
Confidence 45566665443
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.21 E-value=4.3e-08 Score=96.17 Aligned_cols=284 Identities=12% Similarity=0.079 Sum_probs=211.7
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCc--------chHHHHHHHHHhcCChHH
Q 003082 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD--------ILFCNFVREFGKKRDLVS 239 (850)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~--------~~~~~li~~~~~~g~~~~ 239 (850)
..+.++|+++|-.|++.. |....+...+++.|-+.|..+.|++++..+-.++ .+...|..-|...|-++.
T Consensus 48 s~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 467799999999999865 7777788899999999999999999987752222 344568899999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHH----HHHHHHHh--hcCChHHHHHHHH
Q 003082 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY----VFNSLMNV--NAHDLKFTLEVYK 313 (850)
Q Consensus 240 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~----t~~~ll~~--~~~~~~~a~~l~~ 313 (850)
|..+|..+.+.+. .-......|+..|-...+|++|+++-+++.+.|-++..+ .|.-|-.. ...+++.|..++.
T Consensus 126 AE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 9999999987532 345678899999999999999999999998876554432 22222222 1248889999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003082 314 NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADAKWWQMALKVKEDMLS 391 (850)
Q Consensus 314 ~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d--~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 391 (850)
+..+.+ +-.+..--.+-+.....|+++.|.+.++.+.+. .|+ ..+...|..+|...|+.++....+..+.+
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ------n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQ------NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHh------ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 988765 223444445678888999999999999999872 344 34678899999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---hCCHHHHHHHHHHHhhcccc
Q 003082 392 AGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE---ACQFDRAFRLFRSWTLSKTQ 465 (850)
Q Consensus 392 ~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~---~g~~~~A~~l~~~m~~~~~~ 465 (850)
....++ .-..|-.......-.+.|...+.+-+.. +|+...+..+|+.-.. .|...+...+++.|....+.
T Consensus 278 ~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~ 350 (389)
T COG2956 278 TNTGAD--AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLR 350 (389)
T ss_pred ccCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHh
Confidence 644333 3333333333344456666666555554 7999999999987653 35567777788888766543
No 54
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=7.5e-08 Score=99.43 Aligned_cols=305 Identities=11% Similarity=0.010 Sum_probs=161.7
Q ss_pred hhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHH
Q 003082 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (850)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (850)
+.++|++++|+..|.+++ .+.|+..+ .+-+....|...|+|++.++.-.+.++.. |+-.-.++.-.+++.
T Consensus 125 ~f~~kkY~eAIkyY~~AI--~l~p~epi------FYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 125 FFRNKKYDEAIKYYTQAI--ELCPDEPI------FYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHE 194 (606)
T ss_pred hhhcccHHHHHHHHHHHH--hcCCCCch------hhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHH
Confidence 448899999999999999 56887522 23344445667899999999888887765 777677777788888
Q ss_pred cCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHH--------HHHHHHHHHh-CCC--CCCHHHHHHHHHHHHhcCC
Q 003082 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVS--------ALRAYDASKK-HLS--SPNMYICRTIIDVCGICGD 271 (850)
Q Consensus 203 ~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~--------A~~~~~~m~~-~g~--~p~~~~~~~li~~~~~~g~ 271 (850)
..|+.++|+.-. +-..+...|....-.-- |....++-.+ .+. -|+....++..+.+...-.
T Consensus 195 ~lg~~~eal~D~--------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 195 QLGKFDEALFDV--------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred hhccHHHHHHhh--------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc
Confidence 888888876421 11112222221111111 2222222222 222 1333332332222211100
Q ss_pred HHHHHHHHHHHHhCCCCcCHHH---HHHHHHhhcCChHHHHHHHHHHHH---cCCCCC---------HHHHHHHHHHHHH
Q 003082 272 YMKSRAIYEDLRSQNVTLNIYV---FNSLMNVNAHDLKFTLEVYKNMQK---LGVMAD---------MASYNILLKACCL 336 (850)
Q Consensus 272 ~~~A~~~~~~m~~~g~~pd~~t---~~~ll~~~~~~~~~a~~l~~~m~~---~g~~pd---------~~t~~~Ll~~~~~ 336 (850)
..+...+-+-|... +..|.......+..+.+.+.+-.. .....+ ..+...--..+.-
T Consensus 267 --------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL 338 (606)
T KOG0547|consen 267 --------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFL 338 (606)
T ss_pred --------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhh
Confidence 00000000001100 001111101122222222221110 000001 1111111122234
Q ss_pred cCChHHHHHHHHHHHHhhhcCCcccC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 003082 337 AGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415 (850)
Q Consensus 337 ~g~~~~A~~i~~~m~~~~~~g~~~~d-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 415 (850)
.|+...|.+-|+....+ .|. ...|--+-..|....+-++..+.|++..+.+.. |..+|..-...+.-.++++
T Consensus 339 ~g~~~~a~~d~~~~I~l------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKL------DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred cCCchhhhhhHHHHHhc------CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHH
Confidence 57777888888877763 222 223666667788888888888888888776654 6667776666677777888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 003082 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (850)
Q Consensus 416 ~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 461 (850)
+|..=|++.+... +-+...|--+.-+..+.+++++++..|++..+
T Consensus 412 ~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk 456 (606)
T KOG0547|consen 412 EAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKK 456 (606)
T ss_pred HHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888877643 23445566666666677777777777776553
No 55
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.20 E-value=8.3e-09 Score=112.12 Aligned_cols=261 Identities=16% Similarity=0.120 Sum_probs=174.8
Q ss_pred HHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccH
Q 003082 115 MVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEE 194 (850)
Q Consensus 115 ~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 194 (850)
.+..+...|..+|+++.|...++++++.-..-....+..+...+-..+..|...+++.+|+.+|++++......-+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G---- 276 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG---- 276 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC----
Confidence 3344666788999999999999999865111111223333444444777888999999999999988764321111
Q ss_pred HHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC-----CCC-CCHH-HHHHHHHHHH
Q 003082 195 FRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH-----LSS-PNMY-ICRTIIDVCG 267 (850)
Q Consensus 195 ~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~-p~~~-~~~~li~~~~ 267 (850)
..+ |....++++|..+|++.|++++|...+++..+. |.. |.+. .++.++..|.
T Consensus 277 -----------~~h---------~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~ 336 (508)
T KOG1840|consen 277 -----------EDH---------PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQ 336 (508)
T ss_pred -----------CCC---------HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHH
Confidence 111 111266778888888888888888877765432 222 3333 3677778888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 003082 268 ICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347 (850)
Q Consensus 268 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~ 347 (850)
..+++++|..+++... +++.........--.-+++.|-..|...|++++|.++|
T Consensus 337 ~~~~~Eea~~l~q~al--------------------------~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~ 390 (508)
T KOG1840|consen 337 SMNEYEEAKKLLQKAL--------------------------KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELY 390 (508)
T ss_pred HhcchhHHHHHHHHHH--------------------------HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 9999999999998543 44442222111123468999999999999999999999
Q ss_pred HHHHHhhhcCCcccC---HhHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CC-HHHHHHHHHHHHHcCCHHHHH
Q 003082 348 GEVKHLEAKGVLKLD---VFTYSTIVKVFADAKWWQMALKVKEDML----SAGVT-PN-TITWSSLINACANAGLVEQAM 418 (850)
Q Consensus 348 ~~m~~~~~~g~~~~d---~~ty~~li~~~~~~g~~~~A~~l~~~m~----~~g~~-p~-~~ty~~li~~~~~~g~~~~A~ 418 (850)
++..++.+.+.-.-+ ...++.|-..|.+.+++++|.++|.+.. ..|.. |+ ..+|..|...|...|+++.|.
T Consensus 391 k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~ 470 (508)
T KOG1840|consen 391 KKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAE 470 (508)
T ss_pred HHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHH
Confidence 998886544322212 3456777777888888888888887643 22321 22 456777888888888888888
Q ss_pred HHHHHHH
Q 003082 419 HLFEEML 425 (850)
Q Consensus 419 ~l~~~m~ 425 (850)
++.+.+.
T Consensus 471 ~~~~~~~ 477 (508)
T KOG1840|consen 471 ELEEKVL 477 (508)
T ss_pred HHHHHHH
Confidence 7777665
No 56
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=9.9e-06 Score=83.70 Aligned_cols=282 Identities=12% Similarity=0.113 Sum_probs=181.0
Q ss_pred HhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHH--HHHHHHHhcCChHHH
Q 003082 163 QRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFC--NFVREFGKKRDLVSA 240 (850)
Q Consensus 163 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~--~li~~~~~~g~~~~A 240 (850)
..+.+.|....|+..|...+... |-.-.+|..+...+ -+.+.+..+...+|.+...+. -+..+|......+++
T Consensus 172 vv~k~~~~~s~A~~sfv~~v~~~--P~~W~AWleL~~li---t~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~ 246 (559)
T KOG1155|consen 172 VVLKELGLLSLAIDSFVEVVNRY--PWFWSAWLELSELI---TDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEA 246 (559)
T ss_pred HHHHhhchHHHHHHHHHHHHhcC--CcchHHHHHHHHhh---chHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777776655432 43333333333332 122222222223343332222 256667777777888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--cCHHHHHHHHHhhcCChHH---HHHHHHHH
Q 003082 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT--LNIYVFNSLMNVNAHDLKF---TLEVYKNM 315 (850)
Q Consensus 241 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--pd~~t~~~ll~~~~~~~~~---a~~l~~~m 315 (850)
++-.+.....|.+-+...-+....+.-...++++|+.+|+++.+...- -|..+|..++.+....-.. |..+++ +
T Consensus 247 ~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~-i 325 (559)
T KOG1155|consen 247 LQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSN-I 325 (559)
T ss_pred HHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHH-h
Confidence 888888877777555555555555556677888888888888876321 2567777777664432111 222221 1
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003082 316 QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395 (850)
Q Consensus 316 ~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 395 (850)
. +--+.|+.++.+-|.-.++.++|...|+...++. +.....|+.|.+-|...++...|..-++...+-+..
T Consensus 326 --d--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-----p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~ 396 (559)
T KOG1155|consen 326 --D--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-----PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR 396 (559)
T ss_pred --c--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-----cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch
Confidence 1 2234567677777777788888888888877631 223556777778888888888888888888876543
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 003082 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (850)
Q Consensus 396 p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 461 (850)
|-..|-.|.++|.-.+...-|+-.|++..+.. +-|...|.+|.++|.+.++.++|.+-|+....
T Consensus 397 -DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 397 -DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred -hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 77788888888888888888888888887642 34667788888888888888888888876543
No 57
>PRK12370 invasion protein regulator; Provisional
Probab=99.18 E-value=5.5e-09 Score=119.40 Aligned_cols=219 Identities=9% Similarity=-0.048 Sum_probs=142.1
Q ss_pred CChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHH---HhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHH
Q 003082 85 GRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIV---KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNE 161 (850)
Q Consensus 85 g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~ 161 (850)
+.+++|+.+|+++++. +|........+..+..... .....+++++|...++++. .+.|+. ..++...
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al--~ldP~~------~~a~~~l 344 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT--ELDHNN------PQALGLL 344 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH--hcCCCC------HHHHHHH
Confidence 4578999999999988 6654333222221111111 0124466899999999999 567875 3344445
Q ss_pred HHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCCh
Q 003082 162 CQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDL 237 (850)
Q Consensus 162 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~ 237 (850)
+..+...|++++|+..+++.++.. |++...++.++..+...|++++|+..++.+ |.+...+..++..+...|++
T Consensus 345 g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~ 422 (553)
T PRK12370 345 GLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGI 422 (553)
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCH
Confidence 556667899999999999998876 877777888888888888888888877664 54444444455556667888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHH-HHHhhcCChHHHHHHHHHHH
Q 003082 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS-LMNVNAHDLKFTLEVYKNMQ 316 (850)
Q Consensus 238 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~-ll~~~~~~~~~a~~l~~~m~ 316 (850)
++|+..+++..+...+.+...+..+..++...|++++|...+.++... .|+...... +...+.+..+.+...++.+.
T Consensus 423 eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~a~~~l~~ll 500 (553)
T PRK12370 423 DDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNSERALPTIREFL 500 (553)
T ss_pred HHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 888888887765432224455667777777888888888888776543 333333322 22234444455555555554
Q ss_pred H
Q 003082 317 K 317 (850)
Q Consensus 317 ~ 317 (850)
+
T Consensus 501 ~ 501 (553)
T PRK12370 501 E 501 (553)
T ss_pred H
Confidence 3
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.14 E-value=9e-09 Score=104.13 Aligned_cols=197 Identities=12% Similarity=0.059 Sum_probs=128.2
Q ss_pred hhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccc
Q 003082 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (850)
Q Consensus 70 ~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~ 149 (850)
....+..++..+...|++++|+..++++++. .|..... .......+...|++++|.+.|+++.+. .|+.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~------~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~- 98 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLA------YLALALYYQQLGELEKAEDSFRRALTL--NPNN- 98 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHH------HHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCC-
Confidence 3678888999999999999999999999887 4443221 222334566889999999999999953 4543
Q ss_pred cchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHH
Q 003082 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFC 225 (850)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~ 225 (850)
...+...+..+...|++++|+..+++.......+.....+..++..+...|++++|..++... |.+...+.
T Consensus 99 -----~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 173 (234)
T TIGR02521 99 -----GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLL 173 (234)
T ss_pred -----HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHH
Confidence 234555566677889999999999998764322333334555566666666666666655442 33344555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003082 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (850)
Q Consensus 226 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (850)
.+...+...|++++|...+++..+. .+.+...+..++..+...|+.++|..+.+.+.
T Consensus 174 ~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 174 ELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5666666666666666666665554 22344444555555556666666666555544
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.12 E-value=6.5e-09 Score=118.77 Aligned_cols=236 Identities=9% Similarity=-0.012 Sum_probs=170.5
Q ss_pred hccccCCcchhhHHHHHHHHHh---------hcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhH
Q 003082 61 STVRRDLSSRNDYYADMASKLA---------KDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDC 131 (850)
Q Consensus 61 ~~l~~~p~~~~~~~~~l~~~l~---------~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~ 131 (850)
+++..+|+. ...|..++..+. ..+++++|...++++++. +|+...... .++ ..+...|++++
T Consensus 286 ~Al~ldP~~-a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--dP~~~~a~~---~lg---~~~~~~g~~~~ 356 (553)
T PRK12370 286 QCVNMSPNS-IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--DHNNPQALG---LLG---LINTIHSEYIV 356 (553)
T ss_pred HHHhcCCcc-HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--CCCCHHHHH---HHH---HHHHHccCHHH
Confidence 467889988 777777776554 235589999999999998 555443322 222 23447899999
Q ss_pred HHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHH
Q 003082 132 VVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAI 211 (850)
Q Consensus 132 A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 211 (850)
|+..|++++ .+.|+. ...+...+..+...|++++|+..+++.++.. |.....+...+..+...|++++|+
T Consensus 357 A~~~~~~Al--~l~P~~------~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~ 426 (553)
T PRK12370 357 GSLLFKQAN--LLSPIS------ADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAI 426 (553)
T ss_pred HHHHHHHHH--HhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHH
Confidence 999999999 557875 3455566677788999999999999998875 666555555566677789999999
Q ss_pred HHhhhC-----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 003082 212 RYACIV-----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ- 285 (850)
Q Consensus 212 ~~~~~~-----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 285 (850)
..++.+ |.....+..+...|...|++++|...+.++... .+.+....+.+...|...| ++|...++.+.+.
T Consensus 427 ~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~ 503 (553)
T PRK12370 427 RLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-EITGLIAVNLLYAEYCQNS--ERALPTIREFLESE 503 (553)
T ss_pred HHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHh
Confidence 888654 344556778999999999999999999987654 2224455666777777777 5888888877653
Q ss_pred CCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcC
Q 003082 286 NVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLG 319 (850)
Q Consensus 286 g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g 319 (850)
.-.+....+..++.+..|+.+.+..+ +++.+.|
T Consensus 504 ~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 504 QRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 23344455566777777777776666 7776643
No 60
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.10 E-value=2.1e-07 Score=94.38 Aligned_cols=278 Identities=10% Similarity=0.021 Sum_probs=125.4
Q ss_pred CChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHh
Q 003082 85 GRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQR 164 (850)
Q Consensus 85 g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~ 164 (850)
|+|..|+++..+.-+.+..|.- .+-.++.+.-..|+.+.|-..+.++-+. .+|.. ....+.....
T Consensus 98 G~~~qAEkl~~rnae~~e~p~l--------~~l~aA~AA~qrgd~~~an~yL~eaae~--~~~~~-----l~v~ltrarl 162 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQPVL--------AYLLAAEAAQQRGDEDRANRYLAEAAEL--AGDDT-----LAVELTRARL 162 (400)
T ss_pred CcHHHHHHHHHHhhhcCcchHH--------HHHHHHHHHHhcccHHHHHHHHHHHhcc--CCCch-----HHHHHHHHHH
Confidence 7777777777666555444321 1111223334567777777776666632 22221 3334444555
Q ss_pred hhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCc------------chHHHHHHHHH
Q 003082 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD------------ILFCNFVREFG 232 (850)
Q Consensus 165 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~------------~~~~~li~~~~ 232 (850)
+..+|+++.|..-+.++.+.+ |..+.......++|.+.|++.....+...+.+.. .++..+++-..
T Consensus 163 ll~~~d~~aA~~~v~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~ 240 (400)
T COG3071 163 LLNRRDYPAARENVDQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQAR 240 (400)
T ss_pred HHhCCCchhHHHHHHHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHh
Confidence 666777777777776666554 5454445555555555555555555543321110 23333333333
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH-hhcCChHHHHHH
Q 003082 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-VNAHDLKFTLEV 311 (850)
Q Consensus 233 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~-~~~~~~~~a~~l 311 (850)
..+..+.-...|+..... .+.++..-.+++.-+.++|+.++|.++..+..+++..|+. ..++. ...++...-++.
T Consensus 241 ~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~~~~~l~~~d~~~l~k~ 316 (400)
T COG3071 241 DDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CRLIPRLRPGDPEPLIKA 316 (400)
T ss_pred ccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HHHHhhcCCCCchHHHHH
Confidence 333333333344433321 1223333344444455555555555555555554443331 11111 111222222222
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003082 312 YKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (850)
Q Consensus 312 ~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~ 390 (850)
.++-.+. .+-++..+.+|-..|.+.+.|.+|...|+...+ ..|+..+|+-+-++|.+.|+..+|.+++++.+
T Consensus 317 ~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~------~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 317 AEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALK------LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh------cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 2222111 111223444444444444444444444444333 33444444444444444444444444444433
No 61
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.09 E-value=3.6e-06 Score=85.67 Aligned_cols=287 Identities=13% Similarity=0.130 Sum_probs=207.3
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHH
Q 003082 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372 (850)
Q Consensus 293 t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~ 372 (850)
+-..+++...|++..|.++..+-.+.+-. ....|..-..+--..|+.+.|-..+.+..+.. | .++...+-+....
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~--~--~~~l~v~ltrarl 162 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELA--G--DDTLAVELTRARL 162 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccC--C--CchHHHHHHHHHH
Confidence 33455666778888888888776666522 23445555666778899999999999887731 1 3456677778888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHH
Q 003082 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ-------CCNILLQACVE 445 (850)
Q Consensus 373 ~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------~~~~ll~~~~~ 445 (850)
....|+++.|..-+++..+.+.. +........++|.+.|++.+...++..|.+.|.--+.. +|+.+++-...
T Consensus 163 ll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~ 241 (400)
T COG3071 163 LLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARD 241 (400)
T ss_pred HHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999999999888755 67888899999999999999999999999988655543 45555554444
Q ss_pred hCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHH
Q 003082 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC 525 (850)
Q Consensus 446 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~ 525 (850)
.+..+.-...++....+ .+.++..-.+++.-+
T Consensus 242 ~~~~~gL~~~W~~~pr~------------------------------------------------lr~~p~l~~~~a~~l 273 (400)
T COG3071 242 DNGSEGLKTWWKNQPRK------------------------------------------------LRNDPELVVAYAERL 273 (400)
T ss_pred cccchHHHHHHHhccHH------------------------------------------------hhcChhHHHHHHHHH
Confidence 43333333333322211 122333333444433
Q ss_pred --hccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003082 526 --CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRE-DGMSPDVVAYTTAIKVCVRSKRLKQA 602 (850)
Q Consensus 526 --~~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd~~ty~~li~~~~~~g~~~~A 602 (850)
|++.++|.++..+..+++..|+.. ..-.+.+-++.+.-++..++-.+ .+- +.-.+.+|...|.+++.|.+|
T Consensus 274 i~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA 347 (400)
T COG3071 274 IRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKA 347 (400)
T ss_pred HHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHH
Confidence 467899999999999988887722 23356677787777777766654 343 447889999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003082 603 FSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCL 641 (850)
Q Consensus 603 ~~l~~~m~~~g~~p~~~t~~~li~a~~~~g~~~~a~~a~ 641 (850)
.+.|+...+ ..|+..+|+.+-+++.+.|+..+++++.
T Consensus 348 ~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r 384 (400)
T COG3071 348 SEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVR 384 (400)
T ss_pred HHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHH
Confidence 999997775 5799999999999999999999876643
No 62
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=6.5e-06 Score=87.58 Aligned_cols=445 Identities=15% Similarity=0.113 Sum_probs=255.2
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCC--cchH-HHHHHHHHh
Q 003082 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA--DILF-CNFVREFGK 233 (850)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~--~~~~-~~li~~~~~ 233 (850)
.++.-...+...|++++|++...+++..+ |++......-+-+..+.+.+++|+.+.+.-+.. ...| ..-+..+.+
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHH
Confidence 33444456678899999999999999876 888888888888999999999999776664431 1122 233444458
Q ss_pred cCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-cCHHHHHHHHHhhcCChHHHHHH
Q 003082 234 KRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNIYVFNSLMNVNAHDLKFTLEV 311 (850)
Q Consensus 234 ~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd~~t~~~ll~~~~~~~~~a~~l 311 (850)
.++.++|+..++- ..+ +..+...-...+-+.|+|++|+.+|+.+.+.+.. -|...-..++.+-+ +...
T Consensus 92 lnk~Dealk~~~~-----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a-----~l~~ 161 (652)
T KOG2376|consen 92 LNKLDEALKTLKG-----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA-----ALQV 161 (652)
T ss_pred cccHHHHHHHHhc-----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-----hhhH
Confidence 8999999999882 223 3446666677788999999999999999877543 23333333333211 1111
Q ss_pred HHHHHHcCCCCCHHHHHHHH---HHHHHcCChHHHHHHHHHHHHhhhcCCccc-----CHh-----HHHHHHHHHHhcCC
Q 003082 312 YKNMQKLGVMADMASYNILL---KACCLAGNTVLAQEIYGEVKHLEAKGVLKL-----DVF-----TYSTIVKVFADAKW 378 (850)
Q Consensus 312 ~~~m~~~g~~pd~~t~~~Ll---~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~-----d~~-----ty~~li~~~~~~g~ 378 (850)
..|......| ..+|..+. -.+...|++.+|+++++...+...+....- +.. .---|.-.+-..|+
T Consensus 162 -~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 162 -QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred -HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 1233323333 33444444 345578999999999998844332111000 111 11223344667899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHHcCCHH-HHHHHHHHHHHcC-------C---CCCHHHH-HHHHHH
Q 003082 379 WQMALKVKEDMLSAGVTPNTIT----WSSLINACANAGLVE-QAMHLFEEMLQAG-------C---EPNSQCC-NILLQA 442 (850)
Q Consensus 379 ~~~A~~l~~~m~~~g~~p~~~t----y~~li~~~~~~g~~~-~A~~l~~~m~~~g-------~---~p~~~~~-~~ll~~ 442 (850)
.++|..++...+...+. |... -|.|+..-....-++ .++..++.....- + .-..... +.++..
T Consensus 240 t~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred hHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998887643 4422 233332211111111 1222222211100 0 0001111 122222
Q ss_pred HHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHH
Q 003082 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM 522 (850)
Q Consensus 443 ~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li 522 (850)
| .+..+.+.++..... +-.|.. .+.+++
T Consensus 319 ~--tnk~~q~r~~~a~lp-------------------------------------------------~~~p~~-~~~~ll 346 (652)
T KOG2376|consen 319 F--TNKMDQVRELSASLP-------------------------------------------------GMSPES-LFPILL 346 (652)
T ss_pred H--hhhHHHHHHHHHhCC-------------------------------------------------ccCchH-HHHHHH
Confidence 2 222233333322211 112333 334444
Q ss_pred HHHhc----cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHH
Q 003082 523 KACCT----DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILK--------IMREDGMSPDVVAYTTAI 590 (850)
Q Consensus 523 ~~~~~----~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~--------~m~~~g~~pd~~ty~~li 590 (850)
..+-. ....+..++....+....-...+--+++......|+++.|.+++. .+.+.+..|-.+ ..+.
T Consensus 347 ~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv 424 (652)
T KOG2376|consen 347 QEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV--GAIV 424 (652)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH--HHHH
Confidence 43321 244566666655554322234566677788889999999999999 666666666655 4566
Q ss_pred HHHHHcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHH----HHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003082 591 KVCVRSKRLKQAFSLFEEMKH--YQIQPNLVTYITLLR----ARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIE 664 (850)
Q Consensus 591 ~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~li~----a~~~~g~~~~a~~a~~l~~~M~~~g~~p~~~~~~~li~ 664 (850)
..|.+.++.+.|..++.+... ..-.+......+++. --.+.|.-++ +..+++++.+.. .+|..+...++-
T Consensus 425 ~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e---a~s~leel~k~n-~~d~~~l~~lV~ 500 (652)
T KOG2376|consen 425 ALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE---ASSLLEELVKFN-PNDTDLLVQLVT 500 (652)
T ss_pred HHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH---HHHHHHHHHHhC-CchHHHHHHHHH
Confidence 667777776667777666553 111222233333333 3346687555 788999998743 567888889999
Q ss_pred HHHhhhhhhh
Q 003082 665 EWCEGVIQDK 674 (850)
Q Consensus 665 ~~~~~~~~~~ 674 (850)
+||+-....+
T Consensus 501 a~~~~d~eka 510 (652)
T KOG2376|consen 501 AYARLDPEKA 510 (652)
T ss_pred HHHhcCHHHH
Confidence 9987544433
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.05 E-value=1.3e-07 Score=95.48 Aligned_cols=199 Identities=12% Similarity=0.016 Sum_probs=125.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhh
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~ 301 (850)
..+..++..|...|++++|...|++..+.. +.+...+..+...|...|++++|.+.|++..+..
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------------- 95 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--------------- 95 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------------
Confidence 456677888888888888888888887653 2356677778888888888888888888766432
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHH
Q 003082 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (850)
Q Consensus 302 ~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~ 381 (850)
+.+...+..+...+...|++++|.+.|+...... ........+..+...+...|++++
T Consensus 96 -------------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~ 153 (234)
T TIGR02521 96 -------------------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP---LYPQPARSLENAGLCALKAGDFDK 153 (234)
T ss_pred -------------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc---ccccchHHHHHHHHHHHHcCCHHH
Confidence 1233344455555666666666666666655410 011223345555556666667777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 003082 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (850)
Q Consensus 382 A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 460 (850)
|...+++....... +...+..+...+...|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 154 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 154 AEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77766666654322 3455666666666777777777777766655 23344555556666666777777766665543
No 64
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.05 E-value=2.4e-07 Score=90.98 Aligned_cols=221 Identities=13% Similarity=0.082 Sum_probs=105.4
Q ss_pred HHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCC-----cchHHHHHHH
Q 003082 160 NECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRA-----DILFCNFVRE 230 (850)
Q Consensus 160 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~-----~~~~~~li~~ 230 (850)
.++.-|...|-++.|..+|..+.+.+... ..+...++..|....+|++|+...+.+ +.+ ...|+.|...
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L~de~efa--~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~ 189 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQLVDEGEFA--EGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQ 189 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcchhhh--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHH
Confidence 33444444455555555554444432211 112333444444444555444443321 111 0334555555
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhc--CChHHH
Q 003082 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFT 308 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~--~~~~~a 308 (850)
+....+++.|+.++....+... ..+.+--.+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|. |+.++.
T Consensus 190 ~~~~~~~d~A~~~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 190 ALASSDVDRARELLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred HhhhhhHHHHHHHHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 5555666666666665555321 1233333444555566666666666666665533333344444555543 455555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHH-HHHHHHHhhhcCCcccCHhHHHHHHHHHH---hcCCHHHHHH
Q 003082 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE-IYGEVKHLEAKGVLKLDVFTYSTIVKVFA---DAKWWQMALK 384 (850)
Q Consensus 309 ~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~-i~~~m~~~~~~g~~~~d~~ty~~li~~~~---~~g~~~~A~~ 384 (850)
...+..+.+.. +....-+.+-.......-.+.|.. +.+++.+ +|+...+..+|..-. ..|...+-+.
T Consensus 269 ~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r-------~Pt~~gf~rl~~~~l~daeeg~~k~sL~ 339 (389)
T COG2956 269 LNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR-------KPTMRGFHRLMDYHLADAEEGRAKESLD 339 (389)
T ss_pred HHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh-------CCcHHHHHHHHHhhhccccccchhhhHH
Confidence 55555554432 222222222222222233334443 3444444 577777777777654 2345667777
Q ss_pred HHHHHHHC
Q 003082 385 VKEDMLSA 392 (850)
Q Consensus 385 l~~~m~~~ 392 (850)
+++.|...
T Consensus 340 ~lr~mvge 347 (389)
T COG2956 340 LLRDMVGE 347 (389)
T ss_pred HHHHHHHH
Confidence 77777644
No 65
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.04 E-value=8.5e-08 Score=90.08 Aligned_cols=201 Identities=14% Similarity=0.028 Sum_probs=140.2
Q ss_pred CcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCC
Q 003082 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (850)
Q Consensus 67 p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p 146 (850)
++....+...|+-.|...|++..|.+-++++++. +|+.+.... .++. .|.+.|..+.|-+.|++++ .+.|
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~---~~A~---~Yq~~Ge~~~A~e~YrkAl--sl~p 100 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHL---VRAH---YYQKLGENDLADESYRKAL--SLAP 100 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHH---HHHH---HHHHcCChhhHHHHHHHHH--hcCC
Confidence 3445788889999999999999999999999999 777655533 2333 3458899999999999999 5678
Q ss_pred ccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh----CCCCcc
Q 003082 147 LELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADI 222 (850)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~p~~~~ 222 (850)
+. -+++.+-..-++.+|++++|...|++.+.....+....++.+++-...+.|+.+.|..+|++ .|..+.
T Consensus 101 ~~------GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~ 174 (250)
T COG3063 101 NN------GDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPP 174 (250)
T ss_pred Cc------cchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCCh
Confidence 75 44555555666788999999999999887654455555566666666666777766666654 255556
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 223 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
+...+.....+.|++..|...++.....+. ++..+.-..|..-...|+-+.+.+.=.++.+
T Consensus 175 ~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 175 ALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 666666666666777777666666665544 5666655566655666666655555444443
No 66
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.02 E-value=2e-05 Score=84.98 Aligned_cols=102 Identities=15% Similarity=0.300 Sum_probs=76.3
Q ss_pred CCCHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003082 545 SPNHI--SWTILIDACGGSGNVEGALQILKIMREDGMSPDVV-AYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTY 621 (850)
Q Consensus 545 ~p~~~--ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 621 (850)
+|+.. ++-.++..|-+.|+++.|..+++....+ .|+.+ .|-.=...+...|++++|..++++..+.. .||...-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~IN 442 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAIN 442 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHH
Confidence 45554 4556788899999999999999999874 67654 45555678899999999999999998865 4676665
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHcCC
Q 003082 622 ITLLRARSRYGSLHEVQQCLAVYQDMWKAGY 652 (850)
Q Consensus 622 ~~li~a~~~~g~~~~a~~a~~l~~~M~~~g~ 652 (850)
.--.+-..+.+..++|.+... ...+.|.
T Consensus 443 sKcAKYmLrAn~i~eA~~~~s---kFTr~~~ 470 (700)
T KOG1156|consen 443 SKCAKYMLRANEIEEAEEVLS---KFTREGF 470 (700)
T ss_pred HHHHHHHHHccccHHHHHHHH---Hhhhccc
Confidence 555566667888888666444 4555565
No 67
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=4.7e-06 Score=82.78 Aligned_cols=159 Identities=11% Similarity=0.057 Sum_probs=96.3
Q ss_pred hcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcC
Q 003082 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK 204 (850)
Q Consensus 125 ~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (850)
...++..|+.+++.....+-+- .+..+.++.-| +...|++++|+..++-+....- + +...+-+++-.+--.
T Consensus 34 s~rDytGAislLefk~~~~~EE-----E~~~~lWia~C--~fhLgdY~~Al~~Y~~~~~~~~-~-~~el~vnLAcc~FyL 104 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREE-----EDSLQLWIAHC--YFHLGDYEEALNVYTFLMNKDD-A-PAELGVNLACCKFYL 104 (557)
T ss_pred hcccchhHHHHHHHhhccchhh-----hHHHHHHHHHH--HHhhccHHHHHHHHHHHhccCC-C-CcccchhHHHHHHHH
Confidence 5578888998888776332111 12356677555 5578999999999998876442 2 234445555444456
Q ss_pred CChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 205 PDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 205 ~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
|.+.+|.......|+++.---.|...-.+.++-++-..+...+... ..---+|....-..-.+++|+++|.....
T Consensus 105 g~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 105 GQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7788888888887777655555566666677766666555554431 12222334433334467778888777765
Q ss_pred CCCCcCHHHHHHHHH
Q 003082 285 QNVTLNIYVFNSLMN 299 (850)
Q Consensus 285 ~g~~pd~~t~~~ll~ 299 (850)
. .|+-...|.-+.
T Consensus 180 d--n~ey~alNVy~A 192 (557)
T KOG3785|consen 180 D--NPEYIALNVYMA 192 (557)
T ss_pred c--ChhhhhhHHHHH
Confidence 5 344444444443
No 68
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=2.7e-06 Score=84.42 Aligned_cols=188 Identities=10% Similarity=-0.024 Sum_probs=123.7
Q ss_pred HHHHhhcCChHHHHHHHHHHHHhcCChh-hHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhH
Q 003082 78 ASKLAKDGRLEEFAMIVESVVVSEGNVS-KFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFK 156 (850)
Q Consensus 78 ~~~l~~~g~~~~A~~l~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~ 156 (850)
++.+....+|..|+.+++.....+.+-+ ....++ .-.+.+.|++++|+..|.-+....-.|.. ..
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWi--------a~C~fhLgdY~~Al~~Y~~~~~~~~~~~e------l~ 94 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWI--------AHCYFHLGDYEEALNVYTFLMNKDDAPAE------LG 94 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHH--------HHHHHhhccHHHHHHHHHHHhccCCCCcc------cc
Confidence 3455667899999999998876542222 111111 12345789999999999988864433322 33
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCC
Q 003082 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRD 236 (850)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~ 236 (850)
+.+ ++.+.-.|.+.+|..+.+.. |+++.....+...--+.++-++-..+.+.+.+...--.+|....-..-.
T Consensus 95 vnL--Acc~FyLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~H 166 (557)
T KOG3785|consen 95 VNL--ACCKFYLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMH 166 (557)
T ss_pred hhH--HHHHHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHH
Confidence 333 33344578999998877654 4444444445555566777777777777666555555567776666678
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCcCH
Q 003082 237 LVSALRAYDASKKHLSSPNMYICRTIID-VCGICGDYMKSRAIYEDLRSQNVTLNI 291 (850)
Q Consensus 237 ~~~A~~~~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~pd~ 291 (850)
+++|+++|.+.+... |+-...|.-+. +|.+..-++-+.+++.-..+. .||.
T Consensus 167 YQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS 218 (557)
T KOG3785|consen 167 YQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS 218 (557)
T ss_pred HHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc
Confidence 999999999998753 55555554443 567777888888888877765 4554
No 69
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.8e-05 Score=82.57 Aligned_cols=469 Identities=8% Similarity=0.031 Sum_probs=283.2
Q ss_pred HHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHH
Q 003082 120 IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ 199 (850)
Q Consensus 120 ~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (850)
.+.+..+.++..|+-+=+++...+..|++. +. .+..+.-.|+++.|..++..-.-. ..+....+..+.
T Consensus 23 ~r~~l~q~~y~~a~f~adkV~~l~~dp~d~--------~~-~aq~l~~~~~y~ra~~lit~~~le---~~d~~cryL~~~ 90 (611)
T KOG1173|consen 23 VRDALMQHRYKTALFWADKVAGLTNDPADI--------YW-LAQVLYLGRQYERAAHLITTYKLE---KRDIACRYLAAK 90 (611)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhccCChHHH--------HH-HHHHHHhhhHHHHHHHHHHHhhhh---hhhHHHHHHHHH
Confidence 334456677778877777777555555431 11 122233457778777776543211 223445556667
Q ss_pred HHHcCCChHHHHHHhhhC----------CCC---------c----------chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003082 200 LCVNKPDVNLAIRYACIV----------PRA---------D----------ILFCNFVREFGKKRDLVSALRAYDASKKH 250 (850)
Q Consensus 200 ~~~~~~~~~~A~~~~~~~----------p~~---------~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 250 (850)
.+.+..+++.|+.+.... +.+ . .....-...|....+.++|...|.+.+..
T Consensus 91 ~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~ 170 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA 170 (611)
T ss_pred HHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc
Confidence 777777777777766521 111 0 01111234556666777788777776653
Q ss_pred CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhh-cCChH-HHHHHHHHHHHcCCCCCHHH
Q 003082 251 LSSPNMYICRTIIDVCGIC-GDYMKSRAIYEDLRSQ-NVTLNIYVFNSLMNVN-AHDLK-FTLEVYKNMQKLGVMADMAS 326 (850)
Q Consensus 251 g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~-g~~pd~~t~~~ll~~~-~~~~~-~a~~l~~~m~~~g~~pd~~t 326 (850)
|...|.++...-... -..++.+.+|+.+.-. -..-+......+.... ++... .....-.+-.-.|..-|...
T Consensus 171 ----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dl 246 (611)
T KOG1173|consen 171 ----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDL 246 (611)
T ss_pred ----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHH
Confidence 444444433322111 1112333333321100 0112222222222221 11000 00000000111233445555
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003082 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406 (850)
Q Consensus 327 ~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~ 406 (850)
.-.-..-|...+++.+..++++.+.+. .++....+..=|..+...|+..+-..+=.+|.+.-+. ...+|-++.-
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~-----dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~ 320 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEK-----DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGC 320 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhh-----CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHH
Confidence 666667777788888888888887763 3456666667777888888887777777777765332 5778888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhh
Q 003082 407 ACANAGLVEQAMHLFEEMLQAGCEPN-SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHK 485 (850)
Q Consensus 407 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (850)
-|.-.|+..+|.+.|.+...- .|. ...|-.+.+.|.-.|.-|.|+..+...-+.- .
T Consensus 321 YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~--------------------~- 377 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM--------------------P- 377 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc--------------------c-
Confidence 888888889999888877543 222 2357777788888888888887776543210 0
Q ss_pred hcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCH
Q 003082 486 DKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSP-NHISWTILIDACGGSGNV 564 (850)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~ 564 (850)
-..-+..|..+=.+.-++.+.|.++|.+... +.| |+..++-+.-...+.+.+
T Consensus 378 -------------------------G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y 430 (611)
T KOG1173|consen 378 -------------------------GCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEY 430 (611)
T ss_pred -------------------------CCcchHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhh
Confidence 0112233444444445678888888887766 444 677888888888888899
Q ss_pred HHHHHHHHHHHHC--CC---C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003082 565 EGALQILKIMRED--GM---S-PDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQ 638 (850)
Q Consensus 565 ~~A~~l~~~m~~~--g~---~-pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~~~g~~~~a~ 638 (850)
.+|..+|...... .+ + --..+++.|..+|.+.++.++|+..|++.... .+-|..||.++--.+...|+++.
T Consensus 431 ~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~-- 507 (611)
T KOG1173|consen 431 PEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDK-- 507 (611)
T ss_pred HHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHH--
Confidence 9999999887631 11 1 13456888889999999999999999998874 24578888888888888999887
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003082 639 QCLAVYQDMWKAGYKANDTYLKELIEEW 666 (850)
Q Consensus 639 ~a~~l~~~M~~~g~~p~~~~~~~li~~~ 666 (850)
|.+.|++-. .+.||..+...++...
T Consensus 508 -Aid~fhKaL--~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 508 -AIDHFHKAL--ALKPDNIFISELLKLA 532 (611)
T ss_pred -HHHHHHHHH--hcCCccHHHHHHHHHH
Confidence 666777654 6788877666666543
No 70
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.95 E-value=0.00011 Score=76.37 Aligned_cols=418 Identities=10% Similarity=0.079 Sum_probs=297.2
Q ss_pred hcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcC
Q 003082 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK 204 (850)
Q Consensus 125 ~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (850)
.++.+..|..+|++++.. ... ...+++..+-.-+++..+..|..++++.+..= |.....|+.-+..=...
T Consensus 85 sq~e~~RARSv~ERALdv--d~r------~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDV--DYR------NITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKYIYMEEML 154 (677)
T ss_pred hHHHHHHHHHHHHHHHhc--ccc------cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHHHHHHHHh
Confidence 678888999999999943 222 25667766666678899999999999887643 55555677766666778
Q ss_pred CChHHHHHHhhh---CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003082 205 PDVNLAIRYACI---VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281 (850)
Q Consensus 205 ~~~~~A~~~~~~---~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 281 (850)
|+..-|.++|+. ..++..+|.+.|+.=.+-+.++.|..+|++..- +.|++..|-.-...=-++|....|..+|+.
T Consensus 155 gNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 999999999976 356678999999999999999999999999886 458999998888888899999999999998
Q ss_pred HHhC-CCC-cCHHHHHHHHHh--hcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChHHHHHH--------H
Q 003082 282 LRSQ-NVT-LNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMAD--MASYNILLKACCLAGNTVLAQEI--------Y 347 (850)
Q Consensus 282 m~~~-g~~-pd~~t~~~ll~~--~~~~~~~a~~l~~~m~~~g~~pd--~~t~~~Ll~~~~~~g~~~~A~~i--------~ 347 (850)
..+. |-. -+...|+++-.. .++.++.|.-+|+-.+.. ++.+ ...|..+...=-+-|+.....+. |
T Consensus 233 Aie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 233 AIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence 7753 211 122333333332 234777888888877764 2333 44555555544555665443332 2
Q ss_pred HHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHH---HHcCCHHHH
Q 003082 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT-------ITWSSLINAC---ANAGLVEQA 417 (850)
Q Consensus 348 ~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~ty~~li~~~---~~~g~~~~A 417 (850)
+.+.+ + -+.|-.+|--.++.-...|+.+...++|+..... ++|-. ..|-.+=-+| ....+++.+
T Consensus 312 E~~v~---~--np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 312 EKEVS---K--NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred HHHHH---h--CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 33322 1 2345666777777777889999999999998864 45422 1222222222 246788999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHH----HHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCC
Q 003082 418 MHLFEEMLQAGCEPNSQCCNILLQAC----VEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNT 493 (850)
Q Consensus 418 ~~l~~~m~~~g~~p~~~~~~~ll~~~----~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (850)
.++|+..++. ++-...||.-+=-+| .++.++..|.+++....
T Consensus 386 r~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--------------------------------- 431 (677)
T KOG1915|consen 386 RQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--------------------------------- 431 (677)
T ss_pred HHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---------------------------------
Confidence 9999999883 444556776554444 35678888888886543
Q ss_pred CCCcCCCcccccccccCCCcCHHHHHHHHHHHh--ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 003082 494 PNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQIL 571 (850)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~--~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 571 (850)
|..|-..+|-..|..-. ++.+++..++....+-+.. |..+|.-....=...|+.+.|..+|
T Consensus 432 ----------------G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaif 494 (677)
T KOG1915|consen 432 ----------------GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIF 494 (677)
T ss_pred ----------------ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34677777766665443 5789999999999985432 6778888877778899999999999
Q ss_pred HHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003082 572 KIMREDG-MSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHY 612 (850)
Q Consensus 572 ~~m~~~g-~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 612 (850)
+-.++.. +..-...|-+.|+-=...|.++.|..+|+++.+.
T Consensus 495 elAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 495 ELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 9998632 2223456777777777899999999999999874
No 71
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.5e-06 Score=91.85 Aligned_cols=282 Identities=13% Similarity=0.073 Sum_probs=193.1
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChH----HHHHHhhhCCCCcchHHHHHHH
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVN----LAIRYACIVPRADILFCNFVRE 230 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~A~~~~~~~p~~~~~~~~li~~ 230 (850)
.+++......+...+++.+..++.+.+.+.. ++.....+..++ .+.+.|+-. .+-+..+..|+.+.+|.+++--
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY 321 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence 4455555556667788888888888777653 222333334444 444455433 3444556668888888888888
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCcCHHHHHHHHHhhcCChHHH
Q 003082 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ--NVTLNIYVFNSLMNVNAHDLKFT 308 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~pd~~t~~~ll~~~~~~~~~a 308 (850)
|.-.|++.+|++.|......+. .=...|-.....|+-.|..++|...|...-+. |.. -...|..+=....++...|
T Consensus 322 Yl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHHHHHHHHHhccHHHH
Confidence 8888888888888877655321 12346777788888888888888877766542 322 1233334333445677888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCc-c-cCHhHHHHHHHHHHhcCCHHHHHHHH
Q 003082 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL-K-LDVFTYSTIVKVFADAKWWQMALKVK 386 (850)
Q Consensus 309 ~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~-~-~d~~ty~~li~~~~~~g~~~~A~~l~ 386 (850)
.+.|.+..... +-|+...+-+--.....+.+.+|..+|+......+.-.- . --..+++.|...|.+.+++++|+..+
T Consensus 400 e~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 400 EKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 88887776543 557778887777777888999999998877632211100 0 12346788888899999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003082 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (850)
Q Consensus 387 ~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~ 444 (850)
++.+....+ |..+|+++.-.|...|+++.|...|.+.+- +.|+..+...++..+.
T Consensus 479 q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 479 QKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 998877544 888999999999999999999999998875 5788877777776443
No 72
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=1.5e-05 Score=84.93 Aligned_cols=188 Identities=13% Similarity=0.109 Sum_probs=103.0
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhH
Q 003082 77 MASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFK 156 (850)
Q Consensus 77 l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~ 156 (850)
-++.....|.|++|.....+++..++++.. .+.|-+.+..+.++|++|+.+.+.-. +..... +.+
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~--------a~~cKvValIq~~ky~~ALk~ikk~~--~~~~~~----~~~- 82 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDED--------AIRCKVVALIQLDKYEDALKLIKKNG--ALLVIN----SFF- 82 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHh--------hHhhhHhhhhhhhHHHHHHHHHHhcc--hhhhcc----hhh-
Confidence 345567778888888888888887644332 22333344556677777764433222 111111 100
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC-------------------
Q 003082 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV------------------- 217 (850)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------------------- 217 (850)
+=.+++.| +.++.++|+..++. ..+.+......-++.+.+.|++++|+.+|+.+
T Consensus 83 -fEKAYc~Y-rlnk~Dealk~~~~-----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~ 155 (652)
T KOG2376|consen 83 -FEKAYCEY-RLNKLDEALKTLKG-----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV 155 (652)
T ss_pred -HHHHHHHH-HcccHHHHHHHHhc-----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 11222222 45666666665551 11222223333445555666666666655442
Q ss_pred ---------------CC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhCC--------C-----CCCHH-HHHHHHHHHH
Q 003082 218 ---------------PR-ADILFCNFVREFGKKRDLVSALRAYDASKKHL--------S-----SPNMY-ICRTIIDVCG 267 (850)
Q Consensus 218 ---------------p~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------~-----~p~~~-~~~~li~~~~ 267 (850)
|. +...+++..-.+...|+|.+|+++++...+.+ . .-... +---|.-++-
T Consensus 156 ~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ 235 (652)
T KOG2376|consen 156 AAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQ 235 (652)
T ss_pred HHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 11 11334556677788899999999998873221 0 01111 1223444566
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 003082 268 ICGDYMKSRAIYEDLRSQN 286 (850)
Q Consensus 268 ~~g~~~~A~~~~~~m~~~g 286 (850)
..|+.++|.++|....+..
T Consensus 236 ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 236 LQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HhcchHHHHHHHHHHHHhc
Confidence 7899999999999988765
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.87 E-value=4.6e-06 Score=90.60 Aligned_cols=206 Identities=12% Similarity=-0.022 Sum_probs=130.5
Q ss_pred CCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcC-ChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCC
Q 003082 66 DLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGV 144 (850)
Q Consensus 66 ~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~ 144 (850)
||+- ...|..++..+...|+.++|..-+........ +++...... .....+...|++++|.+.++++.+.
T Consensus 2 dp~~-~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~------~~a~~~~~~g~~~~A~~~~~~~l~~-- 72 (355)
T cd05804 2 DPDF-ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAH------VEALSAWIAGDLPKALALLEQLLDD-- 72 (355)
T ss_pred CCcc-HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHH------HHHHHHHHcCCHHHHHHHHHHHHHH--
Confidence 5665 67777888888888999998888888776632 111111111 1112345789999999999999853
Q ss_pred CCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh----CCCC
Q 003082 145 APLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRA 220 (850)
Q Consensus 145 ~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~p~~ 220 (850)
.|+... ....-..........++...+.+.++.. ....|........++..+...|++++|+..++. .|.+
T Consensus 73 ~P~~~~---a~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~ 147 (355)
T cd05804 73 YPRDLL---ALKLHLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD 147 (355)
T ss_pred CCCcHH---HHHHhHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 676421 1110001111111235555555555441 112233333344556677888999988887765 3666
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSS-PNM--YICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 221 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
...+..+...|...|++++|+..++........ ++. ..|..+...+...|++++|..+|++....
T Consensus 148 ~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 148 AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 677788888888999999999988887765321 232 24556778888889999999999887543
No 74
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.85 E-value=5.9e-05 Score=82.95 Aligned_cols=499 Identities=12% Similarity=0.072 Sum_probs=265.7
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhh
Q 003082 76 DMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGF 155 (850)
Q Consensus 76 ~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~ 155 (850)
..+-.-...|.+++|+.+|++..+. ++++..+ ..+|+|++|+++-+.-- .+.. -
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR~-------------DLlNKly---Qs~g~w~eA~eiAE~~D--RiHL--------r 858 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKRY-------------DLLNKLY---QSQGMWSEAFEIAETKD--RIHL--------R 858 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH-------------HHHHHHH---HhcccHHHHHHHHhhcc--ceeh--------h
Confidence 3444456678999999999988764 2333333 37899999998855443 2222 4
Q ss_pred HHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCC--------CC----------CcccHHHHHHHHHcCCChHHHHHHhhhC
Q 003082 156 KLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP--------VK----------ELDEEFRIVQLCVNKPDVNLAIRYACIV 217 (850)
Q Consensus 156 ~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 217 (850)
+++.+.+..+-..++.+.|++.|++.-...+. |. +...|.--+.-+...|+.+.|+.+|..+
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 45555566666778899999888753111100 11 1222222344455688999999988765
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--C------CCc
Q 003082 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ--N------VTL 289 (850)
Q Consensus 218 p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g------~~p 289 (850)
.-|++++...|-+|+.++|-++-++- -|...+-.|.+.|-..|++.+|...|.....- . -..
T Consensus 939 ----~D~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~ 1008 (1416)
T KOG3617|consen 939 ----KDYFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDM 1008 (1416)
T ss_pred ----hhhhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 45788889999999999998876652 46778888999999999999999999875421 0 011
Q ss_pred CHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----hhhcC-CcccCH
Q 003082 290 NIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH-----LEAKG-VLKLDV 363 (850)
Q Consensus 290 d~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~-----~~~~g-~~~~d~ 363 (850)
+...+|.-+..-..+.-.|-+.|++.- .. +..-+-.|-++|.+.+|+++--.-.+ +..+. --..|.
T Consensus 1009 ~d~L~nlal~s~~~d~v~aArYyEe~g---~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp 1080 (1416)
T KOG3617|consen 1009 KDRLANLALMSGGSDLVSAARYYEELG---GY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDP 1080 (1416)
T ss_pred HHHHHHHHhhcCchhHHHHHHHHHHcc---hh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCH
Confidence 223333333222234444555555442 11 11234457788888887764211111 00000 012345
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHH----HHHH
Q 003082 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA-GCEPNSQ----CCNI 438 (850)
Q Consensus 364 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~----~~~~ 438 (850)
...+.-.+.|+...+++.|..++-..++ |.--+.. |+..++.-..++-+.|--. .-.|+.. ....
T Consensus 1081 ~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~Alql-C~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeq 1150 (1416)
T KOG3617|consen 1081 KLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQL-CKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQ 1150 (1416)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHH-HhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHH
Confidence 5566666677777788888777765443 3333333 3333333333333333211 1233433 3555
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCC----CCCcCCC----cccccccccC
Q 003082 439 LLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNT----PNFVPNS----HYSSFDKRFS 510 (850)
Q Consensus 439 ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~----~~~~~~~~~~ 510 (850)
+...|.+.|.+..|-+-|-+.-.+ +..|....++..+.. .+..... ...+++....
T Consensus 1151 vae~c~qQG~Yh~AtKKfTQAGdK----------------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlD 1214 (1416)
T KOG3617|consen 1151 VAELCLQQGAYHAATKKFTQAGDK----------------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLD 1214 (1416)
T ss_pred HHHHHHhccchHHHHHHHhhhhhH----------------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcc
Confidence 667788888888877666432211 011111111111111 1111111 1123344455
Q ss_pred CCcCHHHHHHHHHHHhc--cHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003082 511 FKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPN-HISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYT 587 (850)
Q Consensus 511 ~~p~~~t~~~li~~~~~--~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~ 587 (850)
...|..+.--++.-|.+ .++.--.+++...+ +..+ ..+|.- ..|-+++|-+.+.+...++. ...-|+
T Consensus 1215 Wq~~pq~mK~I~tFYTKgqafd~LanFY~~cAq--iEiee~q~ydK------a~gAl~eA~kCl~ka~~k~~--~~t~l~ 1284 (1416)
T KOG3617|consen 1215 WQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQ--IEIEELQTYDK------AMGALEEAAKCLLKAEQKNM--STTGLD 1284 (1416)
T ss_pred cccChHHHhhhHhhhhcchhHHHHHHHHHHHHH--hhHHHHhhhhH------HhHHHHHHHHHHHHHHhhcc--hHHHHH
Confidence 56666666666666653 12222222221111 0000 012211 12446666666666665431 222333
Q ss_pred HHHHHHHHc-----------CCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCC
Q 003082 588 TAIKVCVRS-----------KRLKQAFSLFEEMKHYQIQP----NLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGY 652 (850)
Q Consensus 588 ~li~~~~~~-----------g~~~~A~~l~~~m~~~g~~p----~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~~g~ 652 (850)
.|-.-..+- .+..+.++-...|.+..+-| -...|..||..+.+..++.. |.+.+.+|.+.--
T Consensus 1285 ~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~---AyRal~el~~k~p 1361 (1416)
T KOG3617|consen 1285 ALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKP---AYRALTELQKKVP 1361 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccH---HHHHHHHHhhcCC
Confidence 333222222 23444444445555543333 35678889999998888777 5556778877554
Q ss_pred CCCHH
Q 003082 653 KANDT 657 (850)
Q Consensus 653 ~p~~~ 657 (850)
..|..
T Consensus 1362 ~~~~s 1366 (1416)
T KOG3617|consen 1362 NVDLS 1366 (1416)
T ss_pred ccchh
Confidence 44433
No 75
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=0.00017 Score=73.57 Aligned_cols=287 Identities=12% Similarity=0.081 Sum_probs=179.6
Q ss_pred HhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHH
Q 003082 232 GKKRDLVSALRAYDASKKH-LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE 310 (850)
Q Consensus 232 ~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~ 310 (850)
+-.++...|...|-.+... .++-|+.....+.+.+...|+.++|...|++.... .|+..+
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~----------------- 267 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVE----------------- 267 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhhh-----------------
Confidence 3345555555544433322 24457778888888888899999998888876643 222211
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003082 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (850)
Q Consensus 311 l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~ 390 (850)
....|..|+ .+.|+.+....+...+-.. .......|-.-...+...++++.|+.+-++..
T Consensus 268 ------------~MD~Ya~LL---~~eg~~e~~~~L~~~Lf~~-----~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I 327 (564)
T KOG1174|consen 268 ------------AMDLYAVLL---GQEGGCEQDSALMDYLFAK-----VKYTASHWFVHAQLLYDEKKFERALNFVEKCI 327 (564)
T ss_pred ------------hHHHHHHHH---HhccCHhhHHHHHHHHHhh-----hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHh
Confidence 111222222 2344554444444443321 11222233333344556777888888887777
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccC
Q 003082 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470 (850)
Q Consensus 391 ~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~ 470 (850)
+.+.. +...|-.=...+...|+.++|.-.|+..+... +-+..+|.-|+..|...|++.+|.-+-+.....
T Consensus 328 ~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-------- 397 (564)
T KOG1174|consen 328 DSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-------- 397 (564)
T ss_pred ccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--------
Confidence 65322 44445444466777888888888888877642 346678888888888888888887655433211
Q ss_pred ccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHH-HHHhc---cHHHHHHHHHHHHHcCCCC
Q 003082 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM-KACCT---DYYRVKALMNEMRTVGLSP 546 (850)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li-~~~~~---~~~~a~~l~~~m~~~g~~p 546 (850)
+..+..+...+- ..|.- .-++|..+++.-.+ +.|
T Consensus 398 ----------------------------------------~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P 435 (564)
T KOG1174|consen 398 ----------------------------------------FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INP 435 (564)
T ss_pred ----------------------------------------hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCC
Confidence 011222222221 11221 24678888877665 456
Q ss_pred CHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 547 NHI-SWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (850)
Q Consensus 547 ~~~-ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 611 (850)
+-. .-+.+...+...|..+++..++++... ..||....+.|.+.+...+.+.+|.+.|....+
T Consensus 436 ~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 436 IYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred ccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 543 556677778889999999999998876 478999999999999999999999999998876
No 76
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.82 E-value=1.3e-06 Score=91.32 Aligned_cols=117 Identities=10% Similarity=-0.083 Sum_probs=57.2
Q ss_pred cCchhHHHHHHHHHHHcC-CCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcC
Q 003082 126 EGRIDCVVGVLKKLNELG-VAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK 204 (850)
Q Consensus 126 ~g~~~~A~~~l~~~~~~~-~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (850)
.+..+.++.-+.+++... +.|+. ....+...+..+...|++++|+..|++.++.. |+.+..++.++..+...
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~-----~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~ 111 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEE-----RAQLHYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYLTQA 111 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHh-----hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHC
Confidence 344555666666655321 12211 12234444445556666666666666665543 55554455555555555
Q ss_pred CChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003082 205 PDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKK 249 (850)
Q Consensus 205 ~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 249 (850)
|++++|+..|+.. |....++..++..+...|++++|++.|+...+
T Consensus 112 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 112 GNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555554444332 33344444444444455555555555554444
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.82 E-value=1.6e-06 Score=81.69 Aligned_cols=196 Identities=11% Similarity=-0.002 Sum_probs=157.6
Q ss_pred hhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHH
Q 003082 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFV 228 (850)
Q Consensus 153 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li 228 (850)
....+.+.++..|.++|++..|..-+++.++.. |+...+|..++..|...|..+.|.+.|+++ |.+..+.|+-+
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG 110 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhh
Confidence 446678888889999999999999999999876 888888999999999999999999998874 88889999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH--hhcCCh
Q 003082 229 REFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDL 305 (850)
Q Consensus 229 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~--~~~~~~ 305 (850)
..+|.+|++++|...|++....-.-+ -..+|..+.-+..+.|+++.|...|++..+.... ...+.-.+.. ...|++
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y 189 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDY 189 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccc
Confidence 99999999999999999998763222 3457888888888999999999999998876322 1223333333 245678
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003082 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (850)
Q Consensus 306 ~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~ 352 (850)
-.|...++.....+. ++..+.-..|..--+.|+.+.|.+.=.++.+
T Consensus 190 ~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 190 APARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred hHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 888888888877664 7877777778888888888888777666655
No 78
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.81 E-value=1.5e-05 Score=88.34 Aligned_cols=58 Identities=12% Similarity=0.083 Sum_probs=35.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 003082 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPN-SQCCNILLQACVEACQFDRAFRLFRSWT 460 (850)
Q Consensus 401 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 460 (850)
+..+...|...|++++|++++++.++. .|+ +..|..-...|-+.|++++|.+.++...
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar 255 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEAR 255 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344455666667777777777766664 344 3445555666666666666666665544
No 79
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.80 E-value=6.2e-06 Score=91.21 Aligned_cols=292 Identities=14% Similarity=0.091 Sum_probs=201.6
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHH
Q 003082 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFG 232 (850)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~ 232 (850)
+++.....+.+.|++++|++.++.-...- +|........+..+.+.|+.++|...+..+ |.+...|..|..+.+
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~I--~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQI--LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhhC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 34444556778999999999998755432 566666677889999999999999887654 666666666777664
Q ss_pred hcC-----ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhCCCCcCHHHHHHHHHhhcC--C
Q 003082 233 KKR-----DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM-KSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--D 304 (850)
Q Consensus 233 ~~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~--~ 304 (850)
-.. ..+...++|+++...- |.......+.-.+.....+. .+...+..+...|+++ +|+.|-..+.. .
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEK 158 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhH
Confidence 333 5677788899887643 43333333322233222333 4445566677788643 34444444432 2
Q ss_pred hHHHHHHHHHHHH----cC----------CCCCHH--HHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccC-HhHHH
Q 003082 305 LKFTLEVYKNMQK----LG----------VMADMA--SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYS 367 (850)
Q Consensus 305 ~~~a~~l~~~m~~----~g----------~~pd~~--t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d-~~ty~ 367 (850)
..-..+++..+.. .+ -+|... ++.-|...|...|++++|++..+.... ..|+ +..|.
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~------htPt~~ely~ 232 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE------HTPTLVELYM 232 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh------cCCCcHHHHH
Confidence 3333444444432 11 123332 445667778899999999999998876 4566 55788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH------HH--HHH
Q 003082 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ------CC--NIL 439 (850)
Q Consensus 368 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~------~~--~~l 439 (850)
.-.+.|-+.|++++|...++..+..+.. |...=+-.+..+.++|++++|.+++......+..|-.. .| .-.
T Consensus 233 ~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~ 311 (517)
T PF12569_consen 233 TKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETEC 311 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHH
Confidence 8889999999999999999999988766 88888888999999999999999999887766433221 11 345
Q ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Q 003082 440 LQACVEACQFDRAFRLFRSWTLS 462 (850)
Q Consensus 440 l~~~~~~g~~~~A~~l~~~m~~~ 462 (850)
..+|.+.|++..|++.|..+.+.
T Consensus 312 a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 312 AEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 67889999999999988776543
No 80
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=2.3e-06 Score=84.11 Aligned_cols=221 Identities=11% Similarity=-0.024 Sum_probs=99.3
Q ss_pred HHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHH
Q 003082 118 SGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRI 197 (850)
Q Consensus 118 ~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 197 (850)
.+...|.+.|.+.+|...|+..++. .|. .++++.+...|.+..+.+.|+.++.+-++.. |.++.....+
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~-------~dTfllLskvY~ridQP~~AL~~~~~gld~f--P~~VT~l~g~ 296 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPH-------PDTFLLLSKVYQRIDQPERALLVIGEGLDSF--PFDVTYLLGQ 296 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCc-------hhHHHHHHHHHHHhccHHHHHHHHhhhhhcC--Cchhhhhhhh
Confidence 3444555666666666666666633 221 1222333344445566666666666554432 4444444444
Q ss_pred HHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 003082 198 VQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273 (850)
Q Consensus 198 ~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 273 (850)
++.+...++.++|+++++.. |.+..+...+...|.-.++.+-|+..|.++++.|. -+...|+.+.-+|.-.++++
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchh
Confidence 44455555555555554432 22223333344444445555555555555555544 33444444444444445555
Q ss_pred HHHHHHHHHHhCCCCcCH--HH-HHH-HHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003082 274 KSRAIYEDLRSQNVTLNI--YV-FNS-LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349 (850)
Q Consensus 274 ~A~~~~~~m~~~g~~pd~--~t-~~~-ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~ 349 (850)
-++.-|+.....--.|+. .+ ||. .+.+-.||+..|.+.|+-.+..+ .-+...+|.|.-.-.+.|+++.|..++..
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 555555444432222221 11 111 11112344444444444444332 12334444444444444555554444444
Q ss_pred HH
Q 003082 350 VK 351 (850)
Q Consensus 350 m~ 351 (850)
..
T Consensus 455 A~ 456 (478)
T KOG1129|consen 455 AK 456 (478)
T ss_pred hh
Confidence 33
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.77 E-value=3.6e-06 Score=88.09 Aligned_cols=117 Identities=11% Similarity=-0.030 Sum_probs=72.0
Q ss_pred cCcHHHHHHHHHHHHhCCC-CCCC-cccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHH
Q 003082 168 SGEVEMFVGLMEVLEEFRL-PVKE-LDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSAL 241 (850)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~ 241 (850)
.++.+.++.-+.+++.... .++. ...++..+..+...|+.++|+..|... |++..+|+.++..|...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3566778888877775431 1211 334556666666677777666655442 555566666777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 242 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
..|+..++..+ -+..+|..+..++...|++++|.+.|+...+.
T Consensus 119 ~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 119 EAFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 77776665321 23455666666666667777777766666554
No 82
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.76 E-value=0.00033 Score=77.34 Aligned_cols=491 Identities=10% Similarity=0.030 Sum_probs=268.3
Q ss_pred hcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCC-cccHH---HHHHH
Q 003082 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKE-LDEEF---RIVQL 200 (850)
Q Consensus 125 ~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~---~l~~~ 200 (850)
..++.++++..|......+..-+..+.+.+ ......+...++.+++ .++..+.+ .+-|.+ ..... -+..-
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l----~~~~~~f~~~~~~Ee~-~Lllli~e-s~i~Re~~~d~ilslm~~~~ 312 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARL----YKGFALFLPKSGQEEV-ILLLLIEE-SLIPRENIEDAILSLMLLLR 312 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHH----hhcccccCCCCcHHHH-HHHHHHHh-hccccccHHHHHHHHHHHHH
Confidence 567778888888888776655544433332 2222234455666665 33333222 222221 11000 00000
Q ss_pred HHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003082 201 CVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280 (850)
Q Consensus 201 ~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 280 (850)
..+. ..+..+..+|..|.-+..+.|++..+.+.|++.... ..-....|+.+...|.-.|.-..|..+++
T Consensus 313 k~r~----------~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~ 381 (799)
T KOG4162|consen 313 KLRL----------KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLR 381 (799)
T ss_pred HHHH----------hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHH
Confidence 1111 123345577888888999999999999999988763 22456678899989999999999999998
Q ss_pred HHHhCCCCcCHHHHHHHHH-hhcC---ChHHHHHHHHHHHH--cC--CCCCHHHHHHHHHHHHHc-----------CChH
Q 003082 281 DLRSQNVTLNIYVFNSLMN-VNAH---DLKFTLEVYKNMQK--LG--VMADMASYNILLKACCLA-----------GNTV 341 (850)
Q Consensus 281 ~m~~~g~~pd~~t~~~ll~-~~~~---~~~~a~~l~~~m~~--~g--~~pd~~t~~~Ll~~~~~~-----------g~~~ 341 (850)
.-....-.|+..+-..+.. .|.+ ..+++++.-.+... .| -......|-.+--+|... ....
T Consensus 382 ~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ 461 (799)
T KOG4162|consen 382 ESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHK 461 (799)
T ss_pred hhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHH
Confidence 7665543354443333333 3443 33444433333333 11 122334444444444321 1234
Q ss_pred HHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003082 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421 (850)
Q Consensus 342 ~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 421 (850)
++.+.+++..+. +.-.|++..|-++= |+..++++.|++..++..+.+-.-+...|..|.-.+...+++.+|+.+.
T Consensus 462 kslqale~av~~---d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vv 536 (799)
T KOG4162|consen 462 KSLQALEEAVQF---DPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVV 536 (799)
T ss_pred HHHHHHHHHHhc---CCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 556666666653 22345555554443 7788999999999999998866778999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccc-ccccCc-cCCchhhhhhhhhhhcccccCCC-C---
Q 003082 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ-VALGED-YDGNTDRISNMEHKDKQSITNTP-N--- 495 (850)
Q Consensus 422 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~--- 495 (850)
+...+.- .-|......=++.-...++.++++.....+...-.. ..+... ..+.......-.+......+..+ +
T Consensus 537 d~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ 615 (799)
T KOG4162|consen 537 DAALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRY 615 (799)
T ss_pred HHHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHH
Confidence 8877541 111111111122222356666665555444322110 000000 00000000000000000000000 0
Q ss_pred -------CcCCCcccccccccCCCcCHH-HH------H-HHHHHHh--ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003082 496 -------FVPNSHYSSFDKRFSFKPTTT-TY------N-ILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDAC 558 (850)
Q Consensus 496 -------~~~~~~~~~~~~~~~~~p~~~-t~------~-~li~~~~--~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 558 (850)
..........+.+....|+.. ++ + .....+. ++.++|...+.+..+. ..-....|......+
T Consensus 616 ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~ 694 (799)
T KOG4162|consen 616 LSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLL 694 (799)
T ss_pred HHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHH
Confidence 000000000122222222221 11 1 1111121 2445666555555442 122455676666777
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 003082 559 GGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFS--LFEEMKHYQIQPNLVTYITLLRARSRYGSLH 635 (850)
Q Consensus 559 ~~~g~~~~A~~l~~~m~~~g~~pd-~~ty~~li~~~~~~g~~~~A~~--l~~~m~~~g~~p~~~t~~~li~a~~~~g~~~ 635 (850)
-..|.+++|.+.|...... .|+ +....++..++.+.|+..-|.. ++.++.+.+ .-+...|..+-..+-+.|+.+
T Consensus 695 ~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 695 EVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchH
Confidence 7888889998888888764 444 4577888888888888777777 888888755 347888888888888899988
Q ss_pred HHHHHHH
Q 003082 636 EVQQCLA 642 (850)
Q Consensus 636 ~a~~a~~ 642 (850)
.|.+++.
T Consensus 772 ~Aaecf~ 778 (799)
T KOG4162|consen 772 QAAECFQ 778 (799)
T ss_pred HHHHHHH
Confidence 7655443
No 83
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.72 E-value=4.5e-05 Score=75.77 Aligned_cols=296 Identities=14% Similarity=0.101 Sum_probs=193.3
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
..-...+.+.+...|++.+|+..|..+++. +|..|...... ...|+..|+-.-|+.=|.+++ .+.||-
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrR------aT~yLAmGksk~al~Dl~rVl--elKpDF-- 105 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRR------ATVYLAMGKSKAALQDLSRVL--ELKPDF-- 105 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHH------HHHHhhhcCCccchhhHHHHH--hcCccH--
Confidence 455567889999999999999999999987 88877654432 224667899999999999999 568874
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCC---cccHH------------HHHHHHHcCCChHHHHHHhh
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKE---LDEEF------------RIVQLCVNKPDVNLAIRYAC 215 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~------------~l~~~~~~~~~~~~A~~~~~ 215 (850)
+.+-+.....+.++|++++|..=|+..++.. |.. ..... ..+..+...|+...|+.+..
T Consensus 106 ----~~ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~ 179 (504)
T KOG0624|consen 106 ----MAARIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMIT 179 (504)
T ss_pred ----HHHHHHhchhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 6677777888899999999999999998765 321 11111 12334445677777776654
Q ss_pred hC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH
Q 003082 216 IV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291 (850)
Q Consensus 216 ~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 291 (850)
.+ |-+...+..-...|...|++..|+.=.....+.. ..|+.++--+-..+-..|+.+.++...++.++. .||.
T Consensus 180 ~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdH 256 (504)
T KOG0624|consen 180 HLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDH 256 (504)
T ss_pred HHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Ccch
Confidence 42 5555556666778888888888877666655432 245666666667777788888888887777754 4553
Q ss_pred HH----HHHHHH-------h----hcCChHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHcCChHHHHHHHHHHHHh
Q 003082 292 YV----FNSLMN-------V----NAHDLKFTLEVYKNMQKLGVMADMASYN---ILLKACCLAGNTVLAQEIYGEVKHL 353 (850)
Q Consensus 292 ~t----~~~ll~-------~----~~~~~~~a~~l~~~m~~~g~~pd~~t~~---~Ll~~~~~~g~~~~A~~i~~~m~~~ 353 (850)
.. |..|=. + ..+++.++++-.+...+.........|| .+-.++...|++.+|.+...++.+
T Consensus 257 K~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~- 335 (504)
T KOG0624|consen 257 KLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD- 335 (504)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh-
Confidence 21 211111 1 1135555666666655543222222332 344455566677777777777665
Q ss_pred hhcCCcccC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003082 354 EAKGVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (850)
Q Consensus 354 ~~~g~~~~d-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 393 (850)
+.|| +.++.--..+|.-..++++|+.-|+...+.+
T Consensus 336 -----~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 336 -----IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred -----cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 3344 5566666666776777777777777766543
No 84
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=5e-07 Score=88.66 Aligned_cols=224 Identities=12% Similarity=0.095 Sum_probs=177.2
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhh
Q 003082 75 ADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSG 154 (850)
Q Consensus 75 ~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~ 154 (850)
..++..|.+.|.+.+|..-++..++.-.-|+.|..+. ..|.+-.++..|+.+|.+.+ ...|-+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLs---------kvY~ridQP~~AL~~~~~gl--d~fP~~------ 289 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLS---------KVYQRIDQPERALLVIGEGL--DSFPFD------ 289 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHH---------HHHHHhccHHHHHHHHhhhh--hcCCch------
Confidence 5778889999999999999999999866666554322 34557788999999999888 446755
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHH
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVRE 230 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~ 230 (850)
...+...++.+-..++.++|+++|+..++.. |.+..+...++..|--.++++.|+++++.+ -.++..|+++.-.
T Consensus 290 VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLC 367 (478)
T KOG1129|consen 290 VTYLLGQARIHEAMEQQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLC 367 (478)
T ss_pred hhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHH
Confidence 4456666777777899999999999998766 778888888888888899999999999874 4566889999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHH--HHhhcCChH
Q 003082 231 FGKKRDLVSALRAYDASKKHLSSPN--MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL--MNVNAHDLK 306 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l--l~~~~~~~~ 306 (850)
|.-.++++-++.-|.+....--.|+ ..+|-.|.......|++..|.+.|+-....+-. +...+|.| +.+..|+++
T Consensus 368 C~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~ 446 (478)
T KOG1129|consen 368 CLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDIL 446 (478)
T ss_pred HHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchH
Confidence 9999999999999999887644443 346888888888899999999999988865322 23445443 455778999
Q ss_pred HHHHHHHHHHHc
Q 003082 307 FTLEVYKNMQKL 318 (850)
Q Consensus 307 ~a~~l~~~m~~~ 318 (850)
.|..++......
T Consensus 447 ~Arsll~~A~s~ 458 (478)
T KOG1129|consen 447 GARSLLNAAKSV 458 (478)
T ss_pred HHHHHHHHhhhh
Confidence 999999887654
No 85
>PF12854 PPR_1: PPR repeat
Probab=98.72 E-value=1.6e-08 Score=66.11 Aligned_cols=32 Identities=47% Similarity=0.817 Sum_probs=18.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003082 578 GMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEM 609 (850)
Q Consensus 578 g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m 609 (850)
|+.||.+|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555555
No 86
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.68 E-value=7.7e-05 Score=91.99 Aligned_cols=233 Identities=10% Similarity=-0.028 Sum_probs=117.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CcCH--HHHHH-
Q 003082 227 FVREFGKKRDLVSALRAYDASKKHLSSPN----MYICRTIIDVCGICGDYMKSRAIYEDLRSQNV---TLNI--YVFNS- 296 (850)
Q Consensus 227 li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~pd~--~t~~~- 296 (850)
+...+...|++++|...+++........+ ....+.+...+...|++++|...+++.....- .+.. .++..
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l 537 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQ 537 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 34455567777777777776655211112 12345555666677777777777776653210 0111 11111
Q ss_pred -HHHhhcCChHHHHHHHHHHHH----cCCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHH
Q 003082 297 -LMNVNAHDLKFTLEVYKNMQK----LGVM--A-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368 (850)
Q Consensus 297 -ll~~~~~~~~~a~~l~~~m~~----~g~~--p-d~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~ 368 (850)
.+....|+++.|.+.+++... .|.. + ....+..+...+...|++++|...+.+................+..
T Consensus 538 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 617 (903)
T PRK04841 538 SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAM 617 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHH
Confidence 112234677777766665543 2211 1 2334555666677789999999988877654322111111233444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHH
Q 003082 369 IVKVFADAKWWQMALKVKEDMLSAGVTP-NTITW-----SSLINACANAGLVEQAMHLFEEMLQAGCEPNS---QCCNIL 439 (850)
Q Consensus 369 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty-----~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~~~~~l 439 (850)
+...+...|++++|...++......... ....+ ...+..+...|+.+.|..++............ ..+..+
T Consensus 618 la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 618 LAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHH
Confidence 5556677788888888777764321000 00101 01123334456666666665554321111010 012334
Q ss_pred HHHHHHhCCHHHHHHHHHHH
Q 003082 440 LQACVEACQFDRAFRLFRSW 459 (850)
Q Consensus 440 l~~~~~~g~~~~A~~l~~~m 459 (850)
..++...|++++|..+++..
T Consensus 698 a~~~~~~g~~~~A~~~l~~a 717 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEEL 717 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 44555556666666555443
No 87
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=6.5e-05 Score=73.24 Aligned_cols=347 Identities=12% Similarity=0.066 Sum_probs=203.1
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchh
Q 003082 74 YADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGS 153 (850)
Q Consensus 74 ~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~ 153 (850)
+.+.+-.+++..+|.+|++++....+. .|..-..+ ..+.-.|-...++..|-..|+++. -..|....
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgL------SlLgyCYY~~Q~f~~AA~CYeQL~--ql~P~~~q--- 79 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGL------SLLGYCYYRLQEFALAAECYEQLG--QLHPELEQ--- 79 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHH------HHHHHHHHHHHHHHHHHHHHHHHH--hhChHHHH---
Confidence 556777889999999999999998887 34222121 112223447789999999999998 44664321
Q ss_pred hhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHH--H--HHHcCCChHHHHHHhhhCCC--CcchHHHH
Q 003082 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIV--Q--LCVNKPDVNLAIRYACIVPR--ADILFCNF 227 (850)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~--~--~~~~~~~~~~A~~~~~~~p~--~~~~~~~l 227 (850)
+..+ -+..+.+.+.+.+|+.+...|... ....+..+ . ..-+.+++.-+..+.++.|. +..+.++.
T Consensus 80 -YrlY--~AQSLY~A~i~ADALrV~~~~~D~------~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~ 150 (459)
T KOG4340|consen 80 -YRLY--QAQSLYKACIYADALRVAFLLLDN------PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINL 150 (459)
T ss_pred -HHHH--HHHHHHHhcccHHHHHHHHHhcCC------HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccc
Confidence 3222 244556789999999999887542 11122211 1 12346677777777888884 44667777
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--cCH--HHHHHHHHhhcC
Q 003082 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT--LNI--YVFNSLMNVNAH 303 (850)
Q Consensus 228 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--pd~--~t~~~ll~~~~~ 303 (850)
.-...+.|+++.|++-|+...+-+---....||.-+--| +.|+++.|++...++.++|+. |.. ..-.-.+.+.
T Consensus 151 gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-- 227 (459)
T KOG4340|consen 151 GCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-- 227 (459)
T ss_pred hheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh--
Confidence 788889999999999999998875445567888777544 678999999999999988864 211 0000000000
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHH
Q 003082 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (850)
Q Consensus 304 ~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~ 383 (850)
.+...+.+...- =+..+|.=...+.+.|+++.|.+-+-.|.-..+ -..|.+|...+.-.= ..+++.+..
T Consensus 228 svgNt~~lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE---~elDPvTLHN~Al~n-~~~~p~~g~ 296 (459)
T KOG4340|consen 228 SVGNTLVLHQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAE---EELDPVTLHNQALMN-MDARPTEGF 296 (459)
T ss_pred cccchHHHHHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCccc---ccCCchhhhHHHHhc-ccCCccccH
Confidence 000000000000 012333334445567777777777776654221 234555554433211 233444445
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHH-hCCHHHHHHHHHH
Q 003082 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC-EPNSQCCNILLQACVE-ACQFDRAFRLFRS 458 (850)
Q Consensus 384 ~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~~~~~ll~~~~~-~g~~~~A~~l~~~ 458 (850)
+-+..++..+. -...||..++-.||+..-++-|-.++.+--..-. -.+...|+ +++++.- .-..++|++-+..
T Consensus 297 ~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~ 371 (459)
T KOG4340|consen 297 EKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDG 371 (459)
T ss_pred HHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHH
Confidence 55555555443 2456777777778887777777777655332211 12334444 3333332 3345555554443
No 88
>PF12854 PPR_1: PPR repeat
Probab=98.66 E-value=2.8e-08 Score=65.01 Aligned_cols=34 Identities=26% Similarity=0.572 Sum_probs=32.1
Q ss_pred cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003082 542 VGLSPNHISWTILIDACGGSGNVEGALQILKIMR 575 (850)
Q Consensus 542 ~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 575 (850)
+|+.||..|||+||++||+.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4889999999999999999999999999999984
No 89
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.65 E-value=0.00032 Score=77.54 Aligned_cols=369 Identities=12% Similarity=0.030 Sum_probs=244.3
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCC--Ccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA--PLE 148 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~--p~~ 148 (850)
...|..|.-++...|+++.+.+.|++.+..- |.. ...+......+...|.-..|+.+++... ... |++
T Consensus 323 ~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-----~~~---~e~w~~~als~saag~~s~Av~ll~~~~--~~~~~ps~ 392 (799)
T KOG4162|consen 323 AAIFDHLTFALSRCGQFEVLAEQFEQALPFS-----FGE---HERWYQLALSYSAAGSDSKAVNLLRESL--KKSEQPSD 392 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-----hhh---HHHHHHHHHHHHHhccchHHHHHHHhhc--ccccCCCc
Confidence 7788889999999999999999999887552 111 2223333344557788888999998887 555 543
Q ss_pred ccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCC-CCCC--CcccHHHHHHHHHcC----CC-------hHHHHHHh
Q 003082 149 LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR-LPVK--ELDEEFRIVQLCVNK----PD-------VNLAIRYA 214 (850)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~--~~~~~~~l~~~~~~~----~~-------~~~A~~~~ 214 (850)
.+.+-+....| +.+.|.+++++++..+++... .... .+..+..++-+|... .. ..++++.+
T Consensus 393 ---~s~~Lmasklc--~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqal 467 (799)
T KOG4162|consen 393 ---ISVLLMASKLC--IERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQAL 467 (799)
T ss_pred ---chHHHHHHHHH--HhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHH
Confidence 22233333344 346788899998888776621 1111 122344444444321 11 22344444
Q ss_pred hh----CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCC-
Q 003082 215 CI----VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ-NVT- 288 (850)
Q Consensus 215 ~~----~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~- 288 (850)
+. -|.++.+.+.+.--|+.+++.+.|.+...+..+.+...+...|..|.-.+.-.+++.+|+.+.+..... |..
T Consensus 468 e~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~ 547 (799)
T KOG4162|consen 468 EEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNH 547 (799)
T ss_pred HHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhh
Confidence 33 377778888888899999999999999999999876778999999999999999999999998876542 210
Q ss_pred -----------------cCHHHHHHHHHhhc-------------------C------ChHHHHHHHH--------HHHHc
Q 003082 289 -----------------LNIYVFNSLMNVNA-------------------H------DLKFTLEVYK--------NMQKL 318 (850)
Q Consensus 289 -----------------pd~~t~~~ll~~~~-------------------~------~~~~a~~l~~--------~m~~~ 318 (850)
--..|...++.... | +..++.+... +....
T Consensus 548 ~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~ 627 (799)
T KOG4162|consen 548 VLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA 627 (799)
T ss_pred hhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc
Confidence 00122222222111 0 1111111111 11111
Q ss_pred C---------CC--CC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHH
Q 003082 319 G---------VM--AD------MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (850)
Q Consensus 319 g---------~~--pd------~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~ 381 (850)
| .. |+ ...|......+.+.+..++|...+.+..++ .......|...-..+...|.+++
T Consensus 628 ~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-----~~l~~~~~~~~G~~~~~~~~~~E 702 (799)
T KOG4162|consen 628 GSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-----DPLSASVYYLRGLLLEVKGQLEE 702 (799)
T ss_pred ccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-----chhhHHHHHHhhHHHHHHHhhHH
Confidence 1 01 11 123344556677778888888777776653 34455667666677788899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003082 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH--LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (850)
Q Consensus 382 A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~--l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m 459 (850)
|...|......+.. ++...+++...+.+.|+..-|.. ++.++.+.+ +.+...|-.+-..+-+.|+.+.|.+.|...
T Consensus 703 A~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 703 AKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 99999988875433 46678889999999998777777 999999876 557788999999999999999999999865
Q ss_pred hh
Q 003082 460 TL 461 (850)
Q Consensus 460 ~~ 461 (850)
..
T Consensus 781 ~q 782 (799)
T KOG4162|consen 781 LQ 782 (799)
T ss_pred Hh
Confidence 54
No 90
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.64 E-value=0.00035 Score=79.09 Aligned_cols=208 Identities=14% Similarity=0.088 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003082 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (850)
Q Consensus 380 ~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m 459 (850)
..|...+.+..+.. .-+..+|+.|--. ...|++.-|...|-+-.... +-+..+|..+--.|.+..+++-|...|...
T Consensus 800 ~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~ 876 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSV 876 (1238)
T ss_pred HHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhh
Confidence 35666666655442 2256666665444 55567777777766555442 345556766666777777888888777765
Q ss_pred hhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHh----ccHHHHHHH
Q 003082 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC----TDYYRVKAL 535 (850)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~----~~~~~a~~l 535 (850)
.... +.|...|- -.+++ ++.-+...+
T Consensus 877 qSLd------------------------------------------------P~nl~~Wl--G~Ali~eavG~ii~~~~l 906 (1238)
T KOG1127|consen 877 QSLD------------------------------------------------PLNLVQWL--GEALIPEAVGRIIERLIL 906 (1238)
T ss_pred hhcC------------------------------------------------chhhHHHH--HHHHhHHHHHHHHHHHHH
Confidence 4321 11222221 11121 223334444
Q ss_pred HHHH--H--HcCCCCCHHHHHHHHHHHHcCCCHHHHHHHH----------HHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003082 536 MNEM--R--TVGLSPNHISWTILIDACGGSGNVEGALQIL----------KIMREDGMSPDVVAYTTAIKVCVRSKRLKQ 601 (850)
Q Consensus 536 ~~~m--~--~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~----------~~m~~~g~~pd~~ty~~li~~~~~~g~~~~ 601 (850)
|..- . ..|--|+..-|-....-...+|+.++-.... +.... |.+-+...|.+.....-+.+...+
T Consensus 907 faHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~ 985 (1238)
T KOG1127|consen 907 FAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRA 985 (1238)
T ss_pred HHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHH
Confidence 4331 1 1222334333333333334455544433322 22222 344456777777777777788888
Q ss_pred HHHHHHHHHH-CCCCCCHHHHHHHHHH----HHhcCChHHHHHHH
Q 003082 602 AFSLFEEMKH-YQIQPNLVTYITLLRA----RSRYGSLHEVQQCL 641 (850)
Q Consensus 602 A~~l~~~m~~-~g~~p~~~t~~~li~a----~~~~g~~~~a~~a~ 641 (850)
|.++..+... ...+-+..+|+.+..- ++..|.++.|.++.
T Consensus 986 a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~ 1030 (1238)
T KOG1127|consen 986 ALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKAS 1030 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhh
Confidence 8777776543 1224566667754433 34456666655543
No 91
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.63 E-value=3.5e-06 Score=89.60 Aligned_cols=247 Identities=10% Similarity=0.076 Sum_probs=148.0
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhH
Q 003082 77 MASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFK 156 (850)
Q Consensus 77 l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~ 156 (850)
.+-.+.+.|.+.+|.-+|+..+.. +|.++..+..++.. ....++-..|+.++++.. .+.|+. .+
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~------qaENE~E~~ai~AL~rcl--~LdP~N------le 354 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGIT------QAENENEQNAISALRRCL--ELDPTN------LE 354 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhH------hhhccchHHHHHHHHHHH--hcCCcc------HH
Confidence 455678889999999999999999 88887775543332 236677788999999999 668887 78
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHH---------HHHHcCCChHHHHHHh----hhCC--CCc
Q 003082 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIV---------QLCVNKPDVNLAIRYA----CIVP--RAD 221 (850)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~~A~~~~----~~~p--~~~ 221 (850)
++..++..|.+.|.-.+|+.+++..+....+ -. +.... +.+..........++| ...| .++
T Consensus 355 aLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~--y~--~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dp 430 (579)
T KOG1125|consen 355 ALMALAVSYTNEGLQNQALKMLDKWIRNKPK--YV--HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDP 430 (579)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhCcc--ch--hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCCh
Confidence 8888999999999999999999988765421 10 00000 0000000011111111 1123 344
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~ 300 (850)
.+.+.|.-.|--.|+|++|+..|+..+. ..| |...||.|...++...+..+|++.|++.++.
T Consensus 431 dvQ~~LGVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--------------- 493 (579)
T KOG1125|consen 431 DVQSGLGVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--------------- 493 (579)
T ss_pred hHHhhhHHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc---------------
Confidence 5555566666666666666666665555 233 3445666666666555666666666555433
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCC-----cccCHhHHHHHHHHHH
Q 003082 301 NAHDLKFTLEVYKNMQKLGVMAD-MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV-----LKLDVFTYSTIVKVFA 374 (850)
Q Consensus 301 ~~~~~~~a~~l~~~m~~~g~~pd-~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~-----~~~d~~ty~~li~~~~ 374 (850)
.|+ +.+...|.-.|...|.+++|.+.|-....+..++. ..++...|.+|=.++.
T Consensus 494 --------------------qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als 553 (579)
T KOG1125|consen 494 --------------------QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALS 553 (579)
T ss_pred --------------------CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHH
Confidence 343 22333455567788888888888777766554321 1122335555544444
Q ss_pred hcCCHH
Q 003082 375 DAKWWQ 380 (850)
Q Consensus 375 ~~g~~~ 380 (850)
-.++.|
T Consensus 554 ~~~~~D 559 (579)
T KOG1125|consen 554 AMNRSD 559 (579)
T ss_pred HcCCch
Confidence 444444
No 92
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=3.4e-05 Score=78.61 Aligned_cols=259 Identities=12% Similarity=0.002 Sum_probs=174.6
Q ss_pred HHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccH
Q 003082 115 MVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEE 194 (850)
Q Consensus 115 ~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 194 (850)
++......+...|+.++|+..|++.. -+.|...+. ++.|. ..+...|++++...+...+.... ......|
T Consensus 234 Ll~~lak~~~~~Gdn~~a~~~Fe~~~--~~dpy~i~~---MD~Ya---~LL~~eg~~e~~~~L~~~Lf~~~--~~ta~~w 303 (564)
T KOG1174|consen 234 LMMALGKCLYYNGDYFQAEDIFSSTL--CANPDNVEA---MDLYA---VLLGQEGGCEQDSALMDYLFAKV--KYTASHW 303 (564)
T ss_pred HHHHHhhhhhhhcCchHHHHHHHHHh--hCChhhhhh---HHHHH---HHHHhccCHhhHHHHHHHHHhhh--hcchhhh
Confidence 33344445567899999999999988 567765443 33333 33455788888877777765432 1223345
Q ss_pred HHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003082 195 FRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270 (850)
Q Consensus 195 ~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 270 (850)
..-+.......++..|+.+.++. |.+...+..-+..+...++.++|.-.|....... +-+..+|.-|+..|...|
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhc
Confidence 55555566777888888877653 4444666666788889999999999999887642 247889999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCcCHHHHHHH-HHhhcC---ChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChHHHHH
Q 003082 271 DYMKSRAIYEDLRSQNVTLNIYVFNSL-MNVNAH---DLKFTLEVYKNMQKLGVMAD-MASYNILLKACCLAGNTVLAQE 345 (850)
Q Consensus 271 ~~~~A~~~~~~m~~~g~~pd~~t~~~l-l~~~~~---~~~~a~~l~~~m~~~g~~pd-~~t~~~Ll~~~~~~g~~~~A~~ 345 (850)
++.+|..+-+...+. +..+..+...+ -.++.- --++|..+++.-.+. .|+ .-..+.+...+...|..+++..
T Consensus 383 ~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 383 RFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred hHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHH
Confidence 999998887765542 12233333222 122222 345677777766554 344 3455666667777788888888
Q ss_pred HHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003082 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (850)
Q Consensus 346 i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 393 (850)
+++.... ..||....+.|.+.+...+.+.+|+..|...++.+
T Consensus 460 LLe~~L~------~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 460 LLEKHLI------IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHh------hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 8877765 46788888888888888888888888887777653
No 93
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.52 E-value=0.003 Score=68.44 Aligned_cols=489 Identities=12% Similarity=0.125 Sum_probs=270.9
Q ss_pred cchhhccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHH
Q 003082 57 TALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVL 136 (850)
Q Consensus 57 ~~~l~~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l 136 (850)
++.-..+..+|-| ...|...+..-.. .-.+.-..+|+++++. -|..+...- .+. +. +.
T Consensus 14 vpfEeEilRnp~s-vk~W~RYIe~k~~-sp~k~~~~lYERal~~--lp~sykiW~---~YL-------~~-R~------- 71 (835)
T KOG2047|consen 14 VPFEEEILRNPFS-VKCWLRYIEHKAG-SPDKQRNLLYERALKE--LPGSYKIWY---DYL-------KA-RR------- 71 (835)
T ss_pred cchHHHHHcCchh-HHHHHHHHHHHcc-CChHHHHHHHHHHHHH--CCCchHHHH---HHH-------HH-HH-------
Confidence 4555677788887 8888887776555 4455667788888877 444433211 111 00 00
Q ss_pred HHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh
Q 003082 137 KKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI 216 (850)
Q Consensus 137 ~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 216 (850)
.++. +..|.... +..+- .-++.++-.+.+| +..|..-+..+..+|+.....+.|+.
T Consensus 72 ~~vk--~~~~T~~~----~~~vn---------~c~er~lv~mHkm---------pRIwl~Ylq~l~~Q~~iT~tR~tfdr 127 (835)
T KOG2047|consen 72 AQVK--HLCPTDPA----YESVN---------NCFERCLVFMHKM---------PRIWLDYLQFLIKQGLITRTRRTFDR 127 (835)
T ss_pred HHhh--ccCCCChH----HHHHH---------HHHHHHHHHHhcC---------CHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 0111 33332211 22111 1112222222222 12344444445555555555555433
Q ss_pred ----CCC--CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----
Q 003082 217 ----VPR--ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ----- 285 (850)
Q Consensus 217 ----~p~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 285 (850)
+|- ...+|...+......+-++-++.+|.+.++. ++..-+--|..+++.+++++|-+.+......
T Consensus 128 ALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~s 203 (835)
T KOG2047|consen 128 ALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVS 203 (835)
T ss_pred HHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhh
Confidence 222 2256777777777778888999999998873 3344677788888999999999998887643
Q ss_pred -CCCcCHHHHHHHHHhhcCChHHH-----HHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcC
Q 003082 286 -NVTLNIYVFNSLMNVNAHDLKFT-----LEVYKNMQKLGVMAD--MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357 (850)
Q Consensus 286 -g~~pd~~t~~~ll~~~~~~~~~a-----~~l~~~m~~~g~~pd--~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g 357 (850)
.-+.+...|.-+....+++.+.. ..+++.+... -+| ...|++|.+-|.+.|.++.|.++|++..+.
T Consensus 204 k~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~---- 277 (835)
T KOG2047|consen 204 KKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT---- 277 (835)
T ss_pred hcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh----
Confidence 12445566777766655443332 3444444432 344 457999999999999999999999987652
Q ss_pred CcccCHhHHHHHHHHHHhcC----------------------CHHHHHHHHHHHHHCCC-----------CCCHHHHHHH
Q 003082 358 VLKLDVFTYSTIVKVFADAK----------------------WWQMALKVKEDMLSAGV-----------TPNTITWSSL 404 (850)
Q Consensus 358 ~~~~d~~ty~~li~~~~~~g----------------------~~~~A~~l~~~m~~~g~-----------~p~~~ty~~l 404 (850)
...+.-|+.+.+.|+.-. +++-.+.-|+.+...+. .-++.+|..-
T Consensus 278 --v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kR 355 (835)
T KOG2047|consen 278 --VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKR 355 (835)
T ss_pred --heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhh
Confidence 244445555555554321 12233344444433321 1123334333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhh
Q 003082 405 INACANAGLVEQAMHLFEEMLQAGCEPN------SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDR 478 (850)
Q Consensus 405 i~~~~~~g~~~~A~~l~~~m~~~g~~p~------~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~ 478 (850)
+. +..|+..+-...+.+..+. +.|- ...|..+.+.|-..|+++.|..+|++...-..
T Consensus 356 V~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y-------------- 418 (835)
T KOG2047|consen 356 VK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY-------------- 418 (835)
T ss_pred hh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc--------------
Confidence 32 2346667777778877764 2222 23578888999999999999999987654321
Q ss_pred hhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHh------ccHHHHHHHHHHHHHcC---------
Q 003082 479 ISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC------TDYYRVKALMNEMRTVG--------- 543 (850)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~------~~~~~a~~l~~~m~~~g--------- 543 (850)
+.+.-...+-..|+ ++.+.|..+++.....-
T Consensus 419 ----------------------------------~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd 464 (835)
T KOG2047|consen 419 ----------------------------------KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYD 464 (835)
T ss_pred ----------------------------------cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhc
Confidence 11111111111121 13455555555443210
Q ss_pred --CCC------CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003082 544 --LSP------NHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQ 615 (850)
Q Consensus 544 --~~p------~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 615 (850)
.++ +..+|+..++.--..|-++....+++++.+..+. ++...-....-+-.+.-++++++.|++=...=-.
T Consensus 465 ~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~ 543 (835)
T KOG2047|consen 465 NSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKW 543 (835)
T ss_pred CCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC
Confidence 011 2334555666666677888888888888875543 2222222222334566677777777765543223
Q ss_pred CC-HHHHHHHHHHH-HhcCChHHHHHHHHHHHHHHHcCCCCCHH
Q 003082 616 PN-LVTYITLLRAR-SRYGSLHEVQQCLAVYQDMWKAGYKANDT 657 (850)
Q Consensus 616 p~-~~t~~~li~a~-~~~g~~~~a~~a~~l~~~M~~~g~~p~~~ 657 (850)
|+ -..|++.+.-+ .+.|... .+.+..+|++..+ ||+|...
T Consensus 544 p~v~diW~tYLtkfi~rygg~k-lEraRdLFEqaL~-~Cpp~~a 585 (835)
T KOG2047|consen 544 PNVYDIWNTYLTKFIKRYGGTK-LERARDLFEQALD-GCPPEHA 585 (835)
T ss_pred ccHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHh-cCCHHHH
Confidence 44 23455544333 2344332 3446778888877 7776643
No 94
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.52 E-value=0.0028 Score=70.40 Aligned_cols=247 Identities=14% Similarity=0.140 Sum_probs=137.1
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCC--CCcchHHHHHHHHHhcCChHHHHHHHH
Q 003082 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP--RADILFCNFVREFGKKRDLVSALRAYD 245 (850)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p--~~~~~~~~li~~~~~~g~~~~A~~~~~ 245 (850)
.|..++|..+|.+... +..+-+.|...|.+++|+++.+.-. +-..+|+.-...+...++.+.|++.|+
T Consensus 813 LgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyE 882 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYE 882 (1416)
T ss_pred HhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHH
Confidence 3555555555554432 1223344445555555555443311 111344444555555555555554443
Q ss_pred H----------HHhCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH--hhcCC
Q 003082 246 A----------SKKHL---------SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHD 304 (850)
Q Consensus 246 ~----------m~~~g---------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~--~~~~~ 304 (850)
. |+... -..|...|..-...+-..|..+.|+.+|..... |-++++ ++.|+
T Consensus 883 K~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk 953 (1416)
T KOG3617|consen 883 KAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGK 953 (1416)
T ss_pred hcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccC
Confidence 2 11111 113445666666767788999999999997653 344444 45689
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcC-------
Q 003082 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK------- 377 (850)
Q Consensus 305 ~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g------- 377 (850)
.++|-++-++- | |....-.|.+.|...|++.+|..+|-.... +...|+.|-.++
T Consensus 954 ~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa-------------fsnAIRlcKEnd~~d~L~n 1014 (1416)
T KOG3617|consen 954 TDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQA-------------FSNAIRLCKENDMKDRLAN 1014 (1416)
T ss_pred chHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-------------HHHHHHHHHhcCHHHHHHH
Confidence 99888776543 2 666777899999999999999999876543 333444332222
Q ss_pred --------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHcCC--CCCHHHHHHH
Q 003082 378 --------WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE--------EMLQAGC--EPNSQCCNIL 439 (850)
Q Consensus 378 --------~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~--------~m~~~g~--~p~~~~~~~l 439 (850)
+.-.|-+.|++. |.. +.--+-.|-+.|.+..|+++-- +++..++ ..|+...+--
T Consensus 1015 lal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rc 1086 (1416)
T KOG3617|consen 1015 LALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRC 1086 (1416)
T ss_pred HHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHH
Confidence 222233333332 111 1122334566777666665432 1222222 3455666767
Q ss_pred HHHHHHhCCHHHHHHHHHHHh
Q 003082 440 LQACVEACQFDRAFRLFRSWT 460 (850)
Q Consensus 440 l~~~~~~g~~~~A~~l~~~m~ 460 (850)
.+-++...++++|.+++-...
T Consensus 1087 adFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1087 ADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHhHHHHHHHHHHHHHHH
Confidence 777777788888887775443
No 95
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.51 E-value=0.00044 Score=75.05 Aligned_cols=198 Identities=14% Similarity=0.031 Sum_probs=122.4
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC-HHHHHH-
Q 003082 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLS-SPNMY-ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-IYVFNS- 296 (850)
Q Consensus 221 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~- 296 (850)
...+..+...+...|+.+.+...+....+... ..+.. ........+...|++++|.+.+++..+. .|+ ...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLH 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHh
Confidence 34555566666666777776666665554322 12221 1222233456678888888888877765 233 223221
Q ss_pred HHHh----hcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHH
Q 003082 297 LMNV----NAHDLKFTLEVYKNMQKLGVMAD-MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371 (850)
Q Consensus 297 ll~~----~~~~~~~a~~l~~~m~~~g~~pd-~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~ 371 (850)
+... ..+....+.+.+.. ..+..|+ ......+...+...|++++|...+++..+. -+.+...+..+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-----~p~~~~~~~~la~ 156 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL-----NPDDAWAVHAVAH 156 (355)
T ss_pred HHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCcHHHHHHHH
Confidence 1111 12344444444443 1122233 345556667788899999999999988873 2334567778888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003082 372 VFADAKWWQMALKVKEDMLSAGV-TPNT--ITWSSLINACANAGLVEQAMHLFEEMLQA 427 (850)
Q Consensus 372 ~~~~~g~~~~A~~l~~~m~~~g~-~p~~--~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 427 (850)
.|...|++++|...+++...... .|+. ..|..+...+...|++++|..++++....
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 88899999999999988876432 2232 34557788888999999999999988543
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.49 E-value=0.00059 Score=84.22 Aligned_cols=372 Identities=11% Similarity=0.053 Sum_probs=219.4
Q ss_pred HHHHHcCCChHHHHHHhhhCCCCcchH---HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003082 198 VQLCVNKPDVNLAIRYACIVPRADILF---CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274 (850)
Q Consensus 198 ~~~~~~~~~~~~A~~~~~~~p~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 274 (850)
+..+...|++.+|+......++..... ......+...|+++.+..+++.+.......+..........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 444566677777777666665543222 22344555678888877777665221111122223344555667899999
Q ss_pred HHHHHHHHHhC--CC----CcCHH----HHHHHHHhhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCh
Q 003082 275 SRAIYEDLRSQ--NV----TLNIY----VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADM----ASYNILLKACCLAGNT 340 (850)
Q Consensus 275 A~~~~~~m~~~--g~----~pd~~----t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~----~t~~~Ll~~~~~~g~~ 340 (850)
|...++..... .. .+... .....+....|+++.|...+++....-...+. ...+.+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 99999877542 10 11111 11122223567999999999887653111121 3455666777889999
Q ss_pred HHHHHHHHHHHHhhhcCC-cccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHHcC
Q 003082 341 VLAQEIYGEVKHLEAKGV-LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA----GVT--P-NTITWSSLINACANAG 412 (850)
Q Consensus 341 ~~A~~i~~~m~~~~~~g~-~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~--p-~~~ty~~li~~~~~~g 412 (850)
++|...+.+........+ ......++..+...+...|++++|...+++.... +.. + ....+..+...+...|
T Consensus 508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G 587 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA 587 (903)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 999999988876432211 1112234556666788899999999998886542 221 1 2334555666777889
Q ss_pred CHHHHHHHHHHHHHcC--CCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcc
Q 003082 413 LVEQAMHLFEEMLQAG--CEPN--SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488 (850)
Q Consensus 413 ~~~~A~~l~~~m~~~g--~~p~--~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (850)
++++|...+.+..... ..+. ...+..+...+...|++++|.+.+.........
T Consensus 588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~----------------------- 644 (903)
T PRK04841 588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGN----------------------- 644 (903)
T ss_pred CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-----------------------
Confidence 9999999998876531 1122 234455666778899999999998876532100
Q ss_pred cccCCCCCcCCCcccccccccCCCcCH-HHH---HHHHHHHhccHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHcC
Q 003082 489 SITNTPNFVPNSHYSSFDKRFSFKPTT-TTY---NILMKACCTDYYRVKALMNEMRTVGLSPN---HISWTILIDACGGS 561 (850)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~p~~-~t~---~~li~~~~~~~~~a~~l~~~m~~~g~~p~---~~ty~~li~~~~~~ 561 (850)
.+..... ... ........++.+.|...+........... ...+..+...+...
T Consensus 645 --------------------~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 645 --------------------GRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred --------------------ccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 0000000 000 01111112456677777655433211111 11234566677888
Q ss_pred CCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003082 562 GNVEGALQILKIMRED----GMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKHY 612 (850)
Q Consensus 562 g~~~~A~~l~~~m~~~----g~~pd-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 612 (850)
|+.++|..++++.... |..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8899988888887652 33222 235566667788889999998888888764
No 97
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.44 E-value=2.4e-05 Score=79.28 Aligned_cols=190 Identities=7% Similarity=-0.058 Sum_probs=130.1
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+..++..+...|++++|+..|++++.. .|..... ..........+...|++++|+..|+++. ...|+...
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~---~~a~~~la~~~~~~~~~~~A~~~~~~~l--~~~p~~~~ 105 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYA---EQAQLDLAYAYYKSGDYAEAIAAADRFI--RLHPNHPD 105 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhH---HHHHHHHHHHHHhcCCHHHHHHHHHHHH--HHCcCCCc
Confidence 777888999999999999999999999987 4432211 1112223345668999999999999999 44675432
Q ss_pred chhhhHHHHHHHHhhhh--------cCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcc
Q 003082 151 DGSGFKLLKNECQRLLD--------SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADI 222 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~ 222 (850)
.. ..+...+..+.+ .|++++|++.++.+.... |++...+..+..... ..... ..
T Consensus 106 ~~---~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~~---------~~ 167 (235)
T TIGR03302 106 AD---YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNRL---------AG 167 (235)
T ss_pred hH---HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHHH---------HH
Confidence 21 123333333333 378999999999998765 655433322221111 00000 01
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSS-P-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 223 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
....+...|.+.|++.+|+..|+...+.... | ....+..+..++.+.|++++|...++.+...
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1235778899999999999999999876321 2 3568889999999999999999999988765
No 98
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=0.0081 Score=68.34 Aligned_cols=500 Identities=13% Similarity=0.143 Sum_probs=252.4
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchh
Q 003082 74 YADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGS 153 (850)
Q Consensus 74 ~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~ 153 (850)
+..++..+-++|-+..|++.|..+...-.. -.-++++.... ...|.-.-.++++++.++.|+..+++.+
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~-vVhth~L~pEw----Lv~yFg~lsve~s~eclkaml~~NirqN------ 677 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRV-VVHTHLLNPEW----LVNYFGSLSVEDSLECLKAMLSANIRQN------ 677 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHH-HHHhccCCHHH----HHHHHHhcCHHHHHHHHHHHHHHHHHhh------
Confidence 456677788889999999888776544200 00111222111 2234455678889999999987776665
Q ss_pred hhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHh
Q 003082 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGK 233 (850)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~ 233 (850)
..+....|..|.++=-...-+++|+...... ..++.++.... +..++.+...-|.+-|+
T Consensus 678 -lQi~VQvatky~eqlg~~~li~lFE~fks~e------GL~yfLgSivn--------------~seDpevh~KYIqAA~k 736 (1666)
T KOG0985|consen 678 -LQIVVQVATKYHEQLGAQALIELFESFKSYE------GLYYFLGSIVN--------------FSEDPEVHFKYIQAACK 736 (1666)
T ss_pred -hHHHHHHHHHHHHHhCHHHHHHHHHhhccch------hHHHHHHHHhc--------------cccCchHHHHHHHHHHh
Confidence 5667777777777766677777777653221 11222222211 12233444455666666
Q ss_pred cCChHHHHHHHHHH------------HhC---CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHH------------
Q 003082 234 KRDLVSALRAYDAS------------KKH---LSSP-----NMYICRTIIDVCGICGDYMKSRAIYED------------ 281 (850)
Q Consensus 234 ~g~~~~A~~~~~~m------------~~~---g~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~------------ 281 (850)
.|++.+..++..+- .+. +..| |.+-+-.=+-.|.-..+..+-+++|-+
T Consensus 737 t~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG 816 (1666)
T KOG0985|consen 737 TGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVG 816 (1666)
T ss_pred hccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhh
Confidence 66666666554321 010 0001 111111111112222233333333322
Q ss_pred -HHhCCCCcCHHHHHHHHHhhcC--------------ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 003082 282 -LRSQNVTLNIYVFNSLMNVNAH--------------DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346 (850)
Q Consensus 282 -m~~~g~~pd~~t~~~ll~~~~~--------------~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i 346 (850)
+....+ +..+.-+.++.+... ++..-...++.....|+. |..+||+|.+.|...++-.+- .
T Consensus 817 ~LLD~dC-~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~--f 892 (1666)
T KOG0985|consen 817 ALLDVDC-SEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPER--F 892 (1666)
T ss_pred hhhcCCC-cHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHH--h
Confidence 221111 112222333332221 233344556666677754 888888888888876654331 1
Q ss_pred HHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHHHHcCCHHHH-----
Q 003082 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS----AGVTPNTITWSSLINACANAGLVEQA----- 417 (850)
Q Consensus 347 ~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~~ty~~li~~~~~~g~~~~A----- 417 (850)
+ +-|..-=+..+.-||...+..-|.-.+++-.. -++--.-..|....+-+.+..+.+--
T Consensus 893 L------------keN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~ 960 (1666)
T KOG0985|consen 893 L------------KENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLN 960 (1666)
T ss_pred c------------ccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHh
Confidence 1 11111112233345544443322222111000 00000112233333333333333222
Q ss_pred ------HHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhccc
Q 003082 418 ------MHLFEEMLQAGC--EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489 (850)
Q Consensus 418 ------~~l~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (850)
..+.++..+.++ ..|+.-.+.-+.++...+-..+-.++++.+.-.+...+.....
T Consensus 961 e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nL----------------- 1023 (1666)
T KOG0985|consen 961 EENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNL----------------- 1023 (1666)
T ss_pred ccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhh-----------------
Confidence 234445554443 2355566777888888888899999988876443221111000
Q ss_pred ccCCCCCcCCCcccccccccCCCcCH---HHHHHHHHHH--------h---ccHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003082 490 ITNTPNFVPNSHYSSFDKRFSFKPTT---TTYNILMKAC--------C---TDYYRVKALMNEMRTVGLSPNHISWTILI 555 (850)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~p~~---~t~~~li~~~--------~---~~~~~a~~l~~~m~~~g~~p~~~ty~~li 555 (850)
.+..++.. ++.|. ..|-.-++-| | .-+++|..+|+..- .+....+.||
T Consensus 1024 --------QnLLiLtA-----ikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLi 1085 (1666)
T KOG0985|consen 1024 --------QNLLILTA-----IKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLI 1085 (1666)
T ss_pred --------hhhHHHHH-----hhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHH
Confidence 00000000 11111 1111111111 0 12567777776542 3455555555
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 003082 556 DACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLH 635 (850)
Q Consensus 556 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~~~g~~~ 635 (850)
. ..++++.|.+.-++.. ....|+.+.++-.+.|.+.+|.+-|-+. -|...|.-+++.+.+.|.++
T Consensus 1086 e---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~e 1150 (1666)
T KOG0985|consen 1086 E---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYE 1150 (1666)
T ss_pred H---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHH
Confidence 5 3466777776655553 3557999999999999999998877554 46788999999999999988
Q ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-hhhhhhhh
Q 003082 636 EVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE-GVIQDKNQ 676 (850)
Q Consensus 636 ~a~~a~~l~~~M~~~g~~p~~~~~~~li~~~~~-~~~~~~~~ 676 (850)
+ ..+.+...++..-.|... ..||-+|.+ +.+.+..+
T Consensus 1151 d---Lv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~ 1187 (1666)
T KOG0985|consen 1151 D---LVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEE 1187 (1666)
T ss_pred H---HHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHH
Confidence 8 454544444455566544 468888887 55555433
No 99
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.39 E-value=4e-05 Score=79.08 Aligned_cols=146 Identities=14% Similarity=0.136 Sum_probs=93.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhH---HHHHHHHHHhcCC
Q 003082 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT---YSTIVKVFADAKW 378 (850)
Q Consensus 302 ~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~t---y~~li~~~~~~g~ 378 (850)
.|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+ +..|... ..+.++.+.-.+.
T Consensus 115 ~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~------~~eD~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 115 EGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ------IDEDSILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp CCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC------CSCCHHHHHHHHHHHHHHHTTTC
T ss_pred cCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh------cCCcHHHHHHHHHHHHHHhCchh
Confidence 34555555554321 3556666778888888888888888888876 3334332 2222333333346
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCH-HHHHHHHH
Q 003082 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF-DRAFRLFR 457 (850)
Q Consensus 379 ~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~A~~l~~ 457 (850)
+.+|..+|+++.+. ..++..+.+.+..++...|++++|..++.+..+.. +-+..+...++.+....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 88888888887654 55678888888888888888888888888876554 33556666677777777777 55666666
Q ss_pred HHhh
Q 003082 458 SWTL 461 (850)
Q Consensus 458 ~m~~ 461 (850)
++..
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 6553
No 100
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.36 E-value=0.01 Score=67.13 Aligned_cols=220 Identities=13% Similarity=0.131 Sum_probs=140.6
Q ss_pred HhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHH
Q 003082 81 LAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKN 160 (850)
Q Consensus 81 l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~ 160 (850)
....+++..|++....+++..++...+.. + -.....+.|+.++|..+++... +..++ +..+.+++-
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~v------L--kaLsl~r~gk~~ea~~~Le~~~--~~~~~---D~~tLq~l~- 84 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKV------L--KALSLFRLGKGDEALKLLEALY--GLKGT---DDLTLQFLQ- 84 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHH------H--HHHHHHHhcCchhHHHHHhhhc--cCCCC---chHHHHHHH-
Confidence 45668899999999999988443221111 1 1123458999999999988777 54554 333344443
Q ss_pred HHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChH----HHHHHhhhCCCCcchHHHHHHHHHhcCC
Q 003082 161 ECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVN----LAIRYACIVPRADILFCNFVREFGKKRD 236 (850)
Q Consensus 161 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~A~~~~~~~p~~~~~~~~li~~~~~~g~ 236 (850)
..|.+.++.++|+.+|++..+.. |. -.....+-.+|++.+++. .|++.+..+|++...|-++++.+...-.
T Consensus 85 --~~y~d~~~~d~~~~~Ye~~~~~~--P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~ 159 (932)
T KOG2053|consen 85 --NVYRDLGKLDEAVHLYERANQKY--PS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIF 159 (932)
T ss_pred --HHHHHHhhhhHHHHHHHHHHhhC--Cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhcc
Confidence 33557899999999999998764 54 455566677888877765 5778889999998887777776665421
Q ss_pred ----------hHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCcCHHHHHHHHHh--hc
Q 003082 237 ----------LVSALRAYDASKKHL-SSPNMYICRTIIDVCGICGDYMKSRAIYE-DLRSQNVTLNIYVFNSLMNV--NA 302 (850)
Q Consensus 237 ----------~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~pd~~t~~~ll~~--~~ 302 (850)
..-|.+.++.+.+.+ ..-+..-...-...+...|++++|++++. ...+.-..-+...-+--+.. ..
T Consensus 160 ~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l 239 (932)
T KOG2053|consen 160 SENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLL 239 (932)
T ss_pred CCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh
Confidence 234667777777654 21122222222334557788999999983 33333223333333333332 34
Q ss_pred CChHHHHHHHHHHHHcC
Q 003082 303 HDLKFTLEVYKNMQKLG 319 (850)
Q Consensus 303 ~~~~~a~~l~~~m~~~g 319 (850)
+++.+..++-.++...|
T Consensus 240 ~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 240 NRWQELFELSSRLLEKG 256 (932)
T ss_pred cChHHHHHHHHHHHHhC
Confidence 67777777777777765
No 101
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.35 E-value=0.0043 Score=67.88 Aligned_cols=220 Identities=11% Similarity=0.080 Sum_probs=144.0
Q ss_pred HHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003082 198 VQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277 (850)
Q Consensus 198 ~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 277 (850)
+.-+...|+++.|+..|-... -....+.+-.....|.+|+.+++.+.... .-..-|..+.+.|+..|+++.|.+
T Consensus 713 g~hl~~~~q~daainhfiea~----~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~ 786 (1636)
T KOG3616|consen 713 GDHLEQIGQLDAAINHFIEAN----CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEE 786 (1636)
T ss_pred hHHHHHHHhHHHHHHHHHHhh----hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHH
Confidence 444556677777766653221 11223555666778888888888776532 223347777888888899999988
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcC
Q 003082 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357 (850)
Q Consensus 278 ~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g 357 (850)
+|.+. +.+-=.+.|.+.++++..|.++-.+.. |.......|-+-..-+-+.|++.+|+++|-.+.
T Consensus 787 lf~e~-------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~------ 851 (1636)
T KOG3616|consen 787 LFTEA-------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG------ 851 (1636)
T ss_pred HHHhc-------chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc------
Confidence 88753 222223344456678888877765543 434455666666666778888888888875442
Q ss_pred CcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003082 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437 (850)
Q Consensus 358 ~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ 437 (850)
.|+ ..|.+|-+.|..++.+++.++-.-. .-..|...+..-|-..|++..|..-|-+.. -|.
T Consensus 852 --~p~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~k 912 (1636)
T KOG3616|consen 852 --EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFK 912 (1636)
T ss_pred --Cch-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHH
Confidence 354 3567788888888888887764321 123455566677778888888887665442 366
Q ss_pred HHHHHHHHhCCHHHHHHHHH
Q 003082 438 ILLQACVEACQFDRAFRLFR 457 (850)
Q Consensus 438 ~ll~~~~~~g~~~~A~~l~~ 457 (850)
+-+++|-.++.|++|.++-+
T Consensus 913 aavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 913 AAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHHHhhhhhhHHHHHHHHh
Confidence 77788888888888877664
No 102
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.33 E-value=0.0083 Score=65.76 Aligned_cols=191 Identities=12% Similarity=0.142 Sum_probs=120.2
Q ss_pred hhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 003082 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYD 245 (850)
Q Consensus 166 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~ 245 (850)
....+|.+|+.+++.+..... ....|-.++.-|...|+++.|.++|-.. ..+...|.+|.+.|+|.+|.++-.
T Consensus 743 i~akew~kai~ildniqdqk~---~s~yy~~iadhyan~~dfe~ae~lf~e~----~~~~dai~my~k~~kw~da~kla~ 815 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKT---ASGYYGEIADHYANKGDFEIAEELFTEA----DLFKDAIDMYGKAGKWEDAFKLAE 815 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhcc---ccccchHHHHHhccchhHHHHHHHHHhc----chhHHHHHHHhccccHHHHHHHHH
Confidence 345788888888887765431 1233456778888888888888887553 456677888888888888888766
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHH
Q 003082 246 ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMA 325 (850)
Q Consensus 246 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~ 325 (850)
+.. |++.....|-+-..-+-+.|++.+|.++|-.+. .|+... -|.-..|..++.+++.++--. ..-..
T Consensus 816 e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~ai---qmydk~~~~ddmirlv~k~h~---d~l~d 883 (1636)
T KOG3616|consen 816 ECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDKAI---QMYDKHGLDDDMIRLVEKHHG---DHLHD 883 (1636)
T ss_pred Hhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchHHH---HHHHhhCcchHHHHHHHHhCh---hhhhH
Confidence 543 444555667666666778888888888775433 233211 111122334444444332211 11234
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 003082 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (850)
Q Consensus 326 t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~ 388 (850)
|.-.+..-|...|++..|++-|-+.. -|.+-+++|-..+.|++|.++-+.
T Consensus 884 t~~~f~~e~e~~g~lkaae~~flea~-------------d~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 884 THKHFAKELEAEGDLKAAEEHFLEAG-------------DFKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred HHHHHHHHHHhccChhHHHHHHHhhh-------------hHHHHHHHhhhhhhHHHHHHHHhc
Confidence 55566777778888888887775432 255666777778888887766543
No 103
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.33 E-value=0.00053 Score=68.44 Aligned_cols=299 Identities=11% Similarity=0.074 Sum_probs=180.7
Q ss_pred hhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHH
Q 003082 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (850)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (850)
++..|.+.+|+.-|..+. ...|+. +.++...+..|...|+..-|+.=+.+.++.. |+-..+-..-+..++
T Consensus 48 lla~~Q~sDALt~yHaAv--e~dp~~------Y~aifrRaT~yLAmGksk~al~Dl~rVlelK--pDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 48 LLARGQLSDALTHYHAAV--EGDPNN------YQAIFRRATVYLAMGKSKAALQDLSRVLELK--PDFMAARIQRGVVLL 117 (504)
T ss_pred HHHhhhHHHHHHHHHHHH--cCCchh------HHHHHHHHHHHhhhcCCccchhhHHHHHhcC--ccHHHHHHHhchhhh
Confidence 446799999999999998 457765 6777777788888899999998888887654 665444445566778
Q ss_pred cCCChHHHHHHhhhC----CCCc---ch------------HHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 003082 203 NKPDVNLAIRYACIV----PRAD---IL------------FCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTI 262 (850)
Q Consensus 203 ~~~~~~~A~~~~~~~----p~~~---~~------------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l 262 (850)
++|.++.|..-|+.+ |++. .+ .-..+..+.-.|+...|+.....+++. .| |...|..-
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--~~Wda~l~~~R 195 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--QPWDASLRQAR 195 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--CcchhHHHHHH
Confidence 888888888877664 2211 11 112233444556666666666666663 33 55556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHH-HHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChH
Q 003082 263 IDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS-LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV 341 (850)
Q Consensus 263 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~-ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~ 341 (850)
..+|...|....|+.=+....+..-.-+...|.+ -+.-..|+.+.++...++.++. .||.-.+-.. | ..+.
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~---Y---Kklk 267 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPF---Y---KKLK 267 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHH---H---HHHH
Confidence 6666666666666665555443321111111111 1111234555555555554443 2332221110 0 1111
Q ss_pred HHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHHcCCHHHHH
Q 003082 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW---SSLINACANAGLVEQAM 418 (850)
Q Consensus 342 ~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty---~~li~~~~~~g~~~~A~ 418 (850)
+..+.++.|+ .....++|.+++.-.+..++....-..++| ..+-.++...|++.+|+
T Consensus 268 Kv~K~les~e--------------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAi 327 (504)
T KOG0624|consen 268 KVVKSLESAE--------------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAI 327 (504)
T ss_pred HHHHHHHHHH--------------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHH
Confidence 1122222222 234567777888877777766444233333 44555666778899999
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Q 003082 419 HLFEEMLQAGCEPN-SQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (850)
Q Consensus 419 ~l~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~ 463 (850)
+...+.++. .|| +.++.--..+|.-...+|.|..-|+...+.+
T Consensus 328 qqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 328 QQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 998888874 444 7788888888888889999999888776544
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.30 E-value=4.4e-05 Score=81.50 Aligned_cols=253 Identities=13% Similarity=0.042 Sum_probs=175.0
Q ss_pred HHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003082 194 EFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC 269 (850)
Q Consensus 194 ~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 269 (850)
++..+..+.+.|+..+|.-.|+.. |....+|.-|+......++-..|+..+.+.++..+ .|..+.-.|.-.|...
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNE 366 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhh
Confidence 455666667777777776666553 55557777777777777777888888888877532 3666777777778888
Q ss_pred CCHHHHHHHHHHHHhCCCC--------cCHHHHHHHHHhhcC--ChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcC
Q 003082 270 GDYMKSRAIYEDLRSQNVT--------LNIYVFNSLMNVNAH--DLKFTLEVYKNMQ-KLGVMADMASYNILLKACCLAG 338 (850)
Q Consensus 270 g~~~~A~~~~~~m~~~g~~--------pd~~t~~~ll~~~~~--~~~~a~~l~~~m~-~~g~~pd~~t~~~Ll~~~~~~g 338 (850)
|.-.+|+.+++.-.....+ ++..+-+. ....+ .+....++|-++. ..+..+|..+++.|--.|--.|
T Consensus 367 g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred hhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 8888888877765443210 00000000 00011 2334556666664 4454578888888888888999
Q ss_pred ChHHHHHHHHHHHHhhhcCCccc-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHH
Q 003082 339 NTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN-TITWSSLINACANAGLVEQ 416 (850)
Q Consensus 339 ~~~~A~~i~~~m~~~~~~g~~~~-d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~ 416 (850)
+++.|.+.|+...+ ++| |..+||.|-..++...+.++|+..|.+.++. .|+ +.+...|.-+|...|.+++
T Consensus 445 efdraiDcf~~AL~------v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykE 516 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQ------VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKE 516 (579)
T ss_pred HHHHHHHHHHHHHh------cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHH
Confidence 99999999999887 455 5668999999999999999999999999875 555 3445556667889999999
Q ss_pred HHHHHHHHHH---c------CCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 003082 417 AMHLFEEMLQ---A------GCEPNSQCCNILLQACVEACQFDRAFRLFR 457 (850)
Q Consensus 417 A~~l~~~m~~---~------g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~ 457 (850)
|.+.|-..+. . +..++...|.+|=.++.-.++.|.+.+...
T Consensus 517 A~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~~ 566 (579)
T KOG1125|consen 517 AVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAAP 566 (579)
T ss_pred HHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhcc
Confidence 9988876553 1 223455678777777777888886666553
No 105
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.0035 Score=71.16 Aligned_cols=245 Identities=13% Similarity=0.106 Sum_probs=162.1
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHH-HHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 003082 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL-CVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYD 245 (850)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~ 245 (850)
..+-++||..+|++.-.. ...++. ...-++.+.|.++.+.... +..|..+..+-.+.|...+|++-|-
T Consensus 1060 ~~~LyEEAF~ifkkf~~n----------~~A~~VLie~i~~ldRA~efAe~~n~-p~vWsqlakAQL~~~~v~dAieSyi 1128 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKFDMN----------VSAIQVLIENIGSLDRAYEFAERCNE-PAVWSQLAKAQLQGGLVKDAIESYI 1128 (1666)
T ss_pred hhhHHHHHHHHHHHhccc----------HHHHHHHHHHhhhHHHHHHHHHhhCC-hHHHHHHHHHHHhcCchHHHHHHHH
Confidence 457778888888764221 112222 2345677777777766533 3678888888888888888887664
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHH
Q 003082 246 ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMA 325 (850)
Q Consensus 246 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~ 325 (850)
.. .|+..|..+++...+.|.|++-...+...++..-.|.+.+--.+-.+..+++.+..+++ .-||..
T Consensus 1129 ka------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi-------~gpN~A 1195 (1666)
T KOG0985|consen 1129 KA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFI-------AGPNVA 1195 (1666)
T ss_pred hc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHh-------cCCCch
Confidence 32 35667888889889999999888888777776666766654333333334444333222 247777
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003082 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405 (850)
Q Consensus 326 t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li 405 (850)
....+-+-|...|.++.|.-+|.. +.-|..|...+...|++..|.+.-++.- +..||.-+-
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~-------------vSN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~Vc 1256 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSN-------------VSNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVC 1256 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHH-------------hhhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHH
Confidence 777788888888888888777653 3346777777888888888877665532 677888887
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003082 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (850)
Q Consensus 406 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m 459 (850)
.+|...+.+.-| +|....+.....-..-++.-|-..|-+++-..+++.-
T Consensus 1257 faCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1257 FACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 777776655443 2322223344445666777777777777777777643
No 106
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.26 E-value=3.9e-05 Score=88.28 Aligned_cols=119 Identities=8% Similarity=-0.076 Sum_probs=60.5
Q ss_pred hcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcC
Q 003082 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK 204 (850)
Q Consensus 125 ~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (850)
+.|++++|..+|+.+. .+.|+. ..+.++.+..+.+.+++++|+..+++.+... |++.
T Consensus 98 ~~g~~~ea~~~l~~~~--~~~Pd~------~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~------------- 154 (694)
T PRK15179 98 AAHRSDEGLAVWRGIH--QRFPDS------SEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSA------------- 154 (694)
T ss_pred HcCCcHHHHHHHHHHH--hhCCCc------HHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCH-------------
Confidence 5555666666655555 335544 3344444445555555565555555555443 4444
Q ss_pred CChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 205 PDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 205 ~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
...+.+..++.+.|++++|..+|+++...+ +-+..++..+..++-+.|+.++|...|+...+
T Consensus 155 -----------------~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 155 -----------------REILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred -----------------HHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444445555555555555555555555421 12244444555555555555555555555443
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.26 E-value=6.9e-05 Score=72.88 Aligned_cols=147 Identities=8% Similarity=0.037 Sum_probs=114.1
Q ss_pred HHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHH
Q 003082 118 SGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRI 197 (850)
Q Consensus 118 ~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 197 (850)
-.+..|...|+++.+....+... .|.. .+...++.++++..++..++.. |++...|..+
T Consensus 21 ~~~~~Y~~~g~~~~v~~~~~~~~----~~~~---------------~~~~~~~~~~~i~~l~~~L~~~--P~~~~~w~~L 79 (198)
T PRK10370 21 LCVGSYLLSPKWQAVRAEYQRLA----DPLH---------------QFASQQTPEAQLQALQDKIRAN--PQNSEQWALL 79 (198)
T ss_pred HHHHHHHHcchHHHHHHHHHHHh----Cccc---------------cccCchhHHHHHHHHHHHHHHC--CCCHHHHHHH
Confidence 34557889999988766653332 2211 0112477788888888888766 8899999999
Q ss_pred HHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHH-HHhcCC--hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003082 198 VQLCVNKPDVNLAIRYACIV----PRADILFCNFVRE-FGKKRD--LVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270 (850)
Q Consensus 198 ~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~-~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 270 (850)
+..|...|+++.|+..++.+ |++..++..+..+ |...|+ .++|.+++++..+.++ .+..++..+...+.+.|
T Consensus 80 g~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~~~~g 158 (198)
T PRK10370 80 GEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLASDAFMQA 158 (198)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHcC
Confidence 99999999999999888764 7788888888886 467777 5999999999998643 36778888888999999
Q ss_pred CHHHHHHHHHHHHhCC
Q 003082 271 DYMKSRAIYEDLRSQN 286 (850)
Q Consensus 271 ~~~~A~~~~~~m~~~g 286 (850)
++++|+..|+.+.+..
T Consensus 159 ~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 159 DYAQAIELWQKVLDLN 174 (198)
T ss_pred CHHHHHHHHHHHHhhC
Confidence 9999999999988753
No 108
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=0.0045 Score=66.05 Aligned_cols=99 Identities=12% Similarity=0.062 Sum_probs=71.2
Q ss_pred hhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHH
Q 003082 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (850)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (850)
.+..|+++.|+..|-+++ .+.|.++. ++.+-...|+..|++++|++=-.+-.+.. |+-+..|+..+.++.
T Consensus 12 a~s~~d~~~ai~~~t~ai--~l~p~nhv------lySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAI--MLSPTNHV------LYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALF 81 (539)
T ss_pred hcccccHHHHHHHHHHHH--ccCCCccc------hhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHH
Confidence 347799999999999998 77776432 23344445667899999888666655543 777777888888888
Q ss_pred cCCChHHHHHHhhh----CCCCcchHHHHHHHH
Q 003082 203 NKPDVNLAIRYACI----VPRADILFCNFVREF 231 (850)
Q Consensus 203 ~~~~~~~A~~~~~~----~p~~~~~~~~li~~~ 231 (850)
-.|++++|+..|.. -|++...+..|..++
T Consensus 82 ~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred hcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 88888888877654 366666666676666
No 109
>PLN02789 farnesyltranstransferase
Probab=98.22 E-value=0.00032 Score=73.34 Aligned_cols=179 Identities=9% Similarity=-0.014 Sum_probs=103.0
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcC-chhHHHHHHHHHHHcCCCCccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREG-RIDCVVGVLKKLNELGVAPLEL 149 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~l~~~~~~~~~p~~~ 149 (850)
..++..+-..+...+++++|+.+++.++.. +|..++.... ...++. ..| .+++++..++++.+ ..|+.
T Consensus 37 ~~a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~---R~~iL~---~L~~~l~eeL~~~~~~i~--~npkn- 105 (320)
T PLN02789 37 REAMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHF---RRLCLE---ALDADLEEELDFAEDVAE--DNPKN- 105 (320)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHH---HHHHHH---HcchhHHHHHHHHHHHHH--HCCcc-
Confidence 445555666677788999999999999988 7777665332 222222 335 57899999999884 46655
Q ss_pred cchhhhHHHHHHHHhhhhcCc--HHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcch
Q 003082 150 FDGSGFKLLKNECQRLLDSGE--VEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADIL 223 (850)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~ 223 (850)
+.++......+.+.|+ .++++.+++++++.. |++..+|+..+.++...|++++++.++..+ |.+..+
T Consensus 106 -----yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sA 178 (320)
T PLN02789 106 -----YQIWHHRRWLAEKLGPDAANKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSA 178 (320)
T ss_pred -----hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhH
Confidence 4444444333434454 256777777777654 666666666666666666666666555443 444455
Q ss_pred HHHHHHHHHhc---CCh----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003082 224 FCNFVREFGKK---RDL----VSALRAYDASKKHLSSPNMYICRTIIDVCGI 268 (850)
Q Consensus 224 ~~~li~~~~~~---g~~----~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 268 (850)
|+.....+.+. |.+ ++++.....++... +-|...|+.+..++..
T Consensus 179 W~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 179 WNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKD 229 (320)
T ss_pred HHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhc
Confidence 55444433332 112 23444444444432 1244455555555544
No 110
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.22 E-value=4.4e-05 Score=78.72 Aligned_cols=150 Identities=9% Similarity=-0.002 Sum_probs=75.6
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHH---HHHHhhcC--
Q 003082 229 REFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN---SLMNVNAH-- 303 (850)
Q Consensus 229 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~---~ll~~~~~-- 303 (850)
..|...|++++|+++++.. .+.......+.+|.+.++++.|.+.++.|.+. ..|....+ +.++...|
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHhCch
Confidence 3344455555555444321 23444444555555555555555555555543 22322211 11222222
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCH-HHH
Q 003082 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW-QMA 382 (850)
Q Consensus 304 ~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~-~~A 382 (850)
.+.+|.-+|+++... +.+++.+.|.+..+....|++++|.+++.+.... -+-|..+...++-.....|+. +.+
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~-----~~~~~d~LaNliv~~~~~gk~~~~~ 255 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK-----DPNDPDTLANLIVCSLHLGKPTEAA 255 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC------CCHHHHHHHHHHHHHHTT-TCHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----ccCCHHHHHHHHHHHHHhCCChhHH
Confidence 455666666665442 3456667777777777777777777777665431 122344555555555566655 556
Q ss_pred HHHHHHHHHC
Q 003082 383 LKVKEDMLSA 392 (850)
Q Consensus 383 ~~l~~~m~~~ 392 (850)
.+.+.++...
T Consensus 256 ~~~l~qL~~~ 265 (290)
T PF04733_consen 256 ERYLSQLKQS 265 (290)
T ss_dssp HHHHHHCHHH
T ss_pred HHHHHHHHHh
Confidence 6677776654
No 111
>PLN02789 farnesyltranstransferase
Probab=98.22 E-value=0.00037 Score=72.93 Aligned_cols=199 Identities=11% Similarity=-0.045 Sum_probs=130.0
Q ss_pred hcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcC-cHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHc
Q 003082 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSG-EVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVN 203 (850)
Q Consensus 125 ~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (850)
..++.++|+..+.+++ .+.|+. ++++......+...| .+++++..++++.+.. |++...|+.....+.+
T Consensus 49 ~~e~serAL~lt~~aI--~lnP~~------ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~l~~ 118 (320)
T PLN02789 49 SDERSPRALDLTADVI--RLNPGN------YTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWLAEK 118 (320)
T ss_pred cCCCCHHHHHHHHHHH--HHCchh------HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHHHHH
Confidence 4578889999999999 568876 455555555555667 6799999999998876 7787788877666666
Q ss_pred CCCh--HHHHHHhhh----CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCH--
Q 003082 204 KPDV--NLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC---GDY-- 272 (850)
Q Consensus 204 ~~~~--~~A~~~~~~----~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~-- 272 (850)
.|.. +.++.+++. -|++..+|+...-++.+.|++++|++.++++++.++ .|..+|+....++.+. |.+
T Consensus 119 l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred cCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccc
Confidence 6653 455555533 377778888888888888888888888888888654 4566677666555544 222
Q ss_pred --HHHHHHHHHHHhCCCCcCHHHHHHHHHhhcC------ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003082 273 --MKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH------DLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336 (850)
Q Consensus 273 --~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~------~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~ 336 (850)
+++++...++.... +-|...|+.+-..+.. ...+|.+.+.+....+ +.+......|++.|+.
T Consensus 198 ~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 198 MRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 34555555555432 2234445444443321 2344666666655533 3356666677777765
No 112
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.00035 Score=68.29 Aligned_cols=306 Identities=12% Similarity=0.010 Sum_probs=197.3
Q ss_pred hhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHc
Q 003082 124 IREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVN 203 (850)
Q Consensus 124 ~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (850)
.+..++.+|++++..-.+. .|.. ...+.-++..|....++..|...++++.... |.-...-.+-++.+-+
T Consensus 21 I~d~ry~DaI~~l~s~~Er--~p~~------rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELER--SPRS------RAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLYK 90 (459)
T ss_pred HHHhhHHHHHHHHHHHHhc--Cccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHHH
Confidence 4789999999998877643 4432 2222223344556789999999999998765 5444444456677788
Q ss_pred CCChHHHHHHhhhCCCCcchHHHHH----HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003082 204 KPDVNLAIRYACIVPRADILFCNFV----REFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY 279 (850)
Q Consensus 204 ~~~~~~A~~~~~~~p~~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 279 (850)
.+.+..|+++...+.+++...+..+ ...-..+++..+..+.++.... -+..+.+...-...+.|+++.|.+-|
T Consensus 91 A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred hcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHHH
Confidence 8999999999888877654443322 2233567888888888876542 23334444444456889999999999
Q ss_pred HHHHhCCCCcCHHHHHHHHHhhc-CChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 003082 280 EDLRSQNVTLNIYVFNSLMNVNA-HDLKFTLEVYKNMQKLGVMADMA----SYNILLKACCLAGNTVLAQEIYGEVKHLE 354 (850)
Q Consensus 280 ~~m~~~g~~pd~~t~~~ll~~~~-~~~~~a~~l~~~m~~~g~~pd~~----t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~ 354 (850)
+...+-|---....||.-+.-+. ++.+.|++...+++++|+.-.+. .-.-.+++-. .|+. ..+..
T Consensus 168 qaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrs-vgNt---~~lh~------ 237 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRS-VGNT---LVLHQ------ 237 (459)
T ss_pred HHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhc-ccch---HHHHH------
Confidence 99887543344567777776654 68999999999999988642211 0001111000 0110 00000
Q ss_pred hcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 003082 355 AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML-SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433 (850)
Q Consensus 355 ~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~-~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 433 (850)
+ .=+..+|.-...+.+.|+++.|.+.+-+|- +.....|.+|...+.-.- -.+++.+..+-+..+.+.. +-..
T Consensus 238 -S----al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ 310 (459)
T KOG4340|consen 238 -S----ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPP 310 (459)
T ss_pred -H----HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCCh
Confidence 0 012345555556788999999999998885 333456778776654322 2344555555566666553 3456
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003082 434 QCCNILLQACVEACQFDRAFRLFRSW 459 (850)
Q Consensus 434 ~~~~~ll~~~~~~g~~~~A~~l~~~m 459 (850)
.||..++-.|||..-++.|-+++.+-
T Consensus 311 ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 311 ETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 78999999999999999999988764
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.15 E-value=0.0006 Score=74.99 Aligned_cols=212 Identities=14% Similarity=0.071 Sum_probs=119.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcC--
Q 003082 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH-- 303 (850)
Q Consensus 226 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~-- 303 (850)
.+...+...|-..+|+.+|+++. .|.-+|.+|...|+..+|..+..+..++ +||...|..+.+....
T Consensus 403 ~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChH
Confidence 34555555555555655555432 3444555555555555555555554442 4555555555544332
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHH
Q 003082 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (850)
Q Consensus 304 ~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~ 383 (850)
-++.|.++++..... .--.+.......++++++.+.|+.-.++ -+.-..+|-.+-.+..+.++++.|.
T Consensus 472 ~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~-----nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI-----NPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc-----CccchhHHHhccHHHHHHhhhHHHH
Confidence 244455555443221 0001111112256677777666655442 1233456666666666777777777
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Q 003082 384 KVKEDMLSAGVTP-NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (850)
Q Consensus 384 ~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 462 (850)
+.|...... .| +...||.+-.+|.+.++-.+|...+.+..+.. .-+...|-..+....+.|.+++|++.+.++...
T Consensus 540 ~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 540 KAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 777766653 33 35567777777777777777777777777665 334445555555566777777777777776655
Q ss_pred c
Q 003082 463 K 463 (850)
Q Consensus 463 ~ 463 (850)
.
T Consensus 617 ~ 617 (777)
T KOG1128|consen 617 R 617 (777)
T ss_pred h
Confidence 4
No 114
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.15 E-value=0.0003 Score=81.18 Aligned_cols=142 Identities=8% Similarity=-0.082 Sum_probs=106.7
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhc
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKK 234 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~ 234 (850)
.+++..++......|++++|..+++..++.. |+. ..+...++..+.+.
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~------------------------------~~a~~~~a~~L~~~ 133 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRF--PDS------------------------------SEAFILMLRGVKRQ 133 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCc------------------------------HHHHHHHHHHHHHh
Confidence 4566666777778899999999999887654 443 36677788899999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh--hcCChHHHHHHH
Q 003082 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVY 312 (850)
Q Consensus 235 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~--~~~~~~~a~~l~ 312 (850)
+++++|+..+++.....+ -+....+.+..++.+.|++++|..+|+++...+. -+..++.++-.+ ..|+.++|...|
T Consensus 134 ~~~eeA~~~~~~~l~~~p-~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~ 211 (694)
T PRK15179 134 QGIEAGRAEIELYFSGGS-SSAREILLEAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVL 211 (694)
T ss_pred ccHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999998542 4667788888999999999999999999998432 224444444444 458999999999
Q ss_pred HHHHHcCCCCCHHHHHHHH
Q 003082 313 KNMQKLGVMADMASYNILL 331 (850)
Q Consensus 313 ~~m~~~g~~pd~~t~~~Ll 331 (850)
+...+.- .+...-|+.++
T Consensus 212 ~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 212 QAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHhh-CcchHHHHHHH
Confidence 9987743 23445555444
No 115
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=0.011 Score=63.22 Aligned_cols=379 Identities=11% Similarity=0.082 Sum_probs=219.3
Q ss_pred hhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHh----hhCCCCcchHHHHHHHHHhcCChHHHH
Q 003082 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYA----CIVPRADILFCNFVREFGKKRDLVSAL 241 (850)
Q Consensus 166 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~----~~~p~~~~~~~~li~~~~~~g~~~~A~ 241 (850)
...|+++.|+.+|...+... |.+.+.+++-..+|...|++.+|+.-. +.-|..+..|+.++.++.-.|+|++|+
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred cccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHH
Confidence 35799999999999887655 889999999999999999999988654 345888899999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH------HHHHhC---CCCcCHHHHHHHHHhhcC---------
Q 003082 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY------EDLRSQ---NVTLNIYVFNSLMNVNAH--------- 303 (850)
Q Consensus 242 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~------~~m~~~---g~~pd~~t~~~ll~~~~~--------- 303 (850)
.-|.+-++.. +.|...++-+.+++... . .+-+.| ..+... ........|..++.....
T Consensus 91 ~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 91 LAYSEGLEKD-PSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHhhcC-CchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 9999988753 24667788888877111 1 111111 111100 000111122222222110
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChH------------HHHHHHHHHHHhhhcCCcccCHhHHHHHHH
Q 003082 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTV------------LAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371 (850)
Q Consensus 304 ~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~------------~A~~i~~~m~~~~~~g~~~~d~~ty~~li~ 371 (850)
+.+........+...+. . .+...|... ....+..++.+..+ ..--..-+..+.+
T Consensus 167 ~d~r~m~a~~~l~~~~~--~---------~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~---~k~~a~~ek~lgn 232 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDE--L---------LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERR---VKEKAHKEKELGN 232 (539)
T ss_pred ccHHHHHHHHHHhcCcc--c---------cccccccccCCCCCCcccccCCCCCccchhHHHHH---HHHhhhHHHHHHH
Confidence 00000111111100000 0 000000000 00000000000000 0001223556677
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-------HHHHHHH
Q 003082 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN-------ILLQACV 444 (850)
Q Consensus 372 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~-------~ll~~~~ 444 (850)
+.-+..+++.|.+-+....+.. -++.-++....+|...|.+.+....-+...+.|.. ...-|+ .+-.+|.
T Consensus 233 aaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~ 309 (539)
T KOG0548|consen 233 AAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYT 309 (539)
T ss_pred HHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhh
Confidence 7778888888998888887765 35555677777888888888877777776665522 122232 2334667
Q ss_pred HhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHH
Q 003082 445 EACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524 (850)
Q Consensus 445 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~ 524 (850)
+.++++.|...|.+...... .|+..+-
T Consensus 310 k~~~~~~ai~~~~kaLte~R-----------------------------------------------t~~~ls~------ 336 (539)
T KOG0548|consen 310 KREDYEGAIKYYQKALTEHR-----------------------------------------------TPDLLSK------ 336 (539)
T ss_pred hHHhHHHHHHHHHHHhhhhc-----------------------------------------------CHHHHHH------
Confidence 77888888888877543221 1221110
Q ss_pred HhccHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003082 525 CCTDYYRVKALMNEMRTVGLSPNHI-SWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAF 603 (850)
Q Consensus 525 ~~~~~~~a~~l~~~m~~~g~~p~~~-ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~ 603 (850)
.+..+++........- +.|... -.-.-.+.+.+.|++..|...+.++++.. +-|...|....-+|.+.|.+..|+
T Consensus 337 -lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL 412 (539)
T KOG0548|consen 337 -LKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEAL 412 (539)
T ss_pred -HHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHH
Confidence 0112222222222221 223221 11122667788999999999999999875 557889999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003082 604 SLFEEMKHYQIQPNLVTYITLLRARSRYG 632 (850)
Q Consensus 604 ~l~~~m~~~g~~p~~~t~~~li~a~~~~g 632 (850)
+=-+...+. .|+ .+.+|.|.|
T Consensus 413 ~Da~~~ieL--~p~------~~kgy~RKg 433 (539)
T KOG0548|consen 413 KDAKKCIEL--DPN------FIKAYLRKG 433 (539)
T ss_pred HHHHHHHhc--Cch------HHHHHHHHH
Confidence 887777664 343 345555554
No 116
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=0.0008 Score=64.72 Aligned_cols=188 Identities=15% Similarity=0.071 Sum_probs=126.7
Q ss_pred cCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHH
Q 003082 84 DGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQ 163 (850)
Q Consensus 84 ~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~ 163 (850)
..+.++..++..+++... +.+..-.--+.++..++.+.+..|+.+.|...+++.... .|.. .....-.+.
T Consensus 25 ~rnseevv~l~~~~~~~~--k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S------~RV~~lkam 94 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYS--KSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGS------KRVGKLKAM 94 (289)
T ss_pred ccCHHHHHHHHHHHHHHh--hhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCC------hhHHHHHHH
Confidence 356677777777776542 111000111445556666777889999999999988753 3554 222333334
Q ss_pred hhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHH----HhhhCCCCcchHHHHHHHHHhcCChHH
Q 003082 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIR----YACIVPRADILFCNFVREFGKKRDLVS 239 (850)
Q Consensus 164 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~----~~~~~p~~~~~~~~li~~~~~~g~~~~ 239 (850)
.+-..|.+++|+++++.++... |++.+.+-.-+...-.+|+..+|++ +.+.++.+..+|..|...|...|+|++
T Consensus 95 ~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~k 172 (289)
T KOG3060|consen 95 LLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEK 172 (289)
T ss_pred HHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHH
Confidence 4556799999999999998765 7776666655555556676666665 567788888889889999999999999
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Q 003082 240 ALRAYDASKKHLSSP-NMYICRTIIDVCGICG---DYMKSRAIYEDLRSQ 285 (850)
Q Consensus 240 A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 285 (850)
|.-.+++++-. .| +...+..+.+.+--.| ++..|...|.+..+.
T Consensus 173 A~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 173 AAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 98888888763 34 5555666766655444 456677777776654
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.06 E-value=0.00015 Score=70.59 Aligned_cols=151 Identities=5% Similarity=-0.057 Sum_probs=114.8
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhH
Q 003082 77 MASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFK 156 (850)
Q Consensus 77 l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~ 156 (850)
.+..|...|+++......+.+.. |.. .+...++.++++..|++.+ ...|+. .+
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~----~~~---------------~~~~~~~~~~~i~~l~~~L--~~~P~~------~~ 74 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLAD----PLH---------------QFASQQTPEAQLQALQDKI--RANPQN------SE 74 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhC----ccc---------------cccCchhHHHHHHHHHHHH--HHCCCC------HH
Confidence 34567888888887666533321 110 1113577788899998888 447776 56
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHH-HcCCC--hHHHHHHhhhC----CCCcchHHHHHH
Q 003082 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC-VNKPD--VNLAIRYACIV----PRADILFCNFVR 229 (850)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~A~~~~~~~----p~~~~~~~~li~ 229 (850)
.+..++..+...|++++|+..|++..... |++...+..++.++ ...|+ .++|...++.+ |.+..++..++.
T Consensus 75 ~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~ 152 (198)
T PRK10370 75 QWALLGEYYLWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLAS 152 (198)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 77777888889999999999999988776 88888888888864 66676 58898887664 777789999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 003082 230 EFGKKRDLVSALRAYDASKKHLSSPNMY 257 (850)
Q Consensus 230 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 257 (850)
.+.+.|++++|+..|+.+.+... |+..
T Consensus 153 ~~~~~g~~~~Ai~~~~~aL~l~~-~~~~ 179 (198)
T PRK10370 153 DAFMQADYAQAIELWQKVLDLNS-PRVN 179 (198)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCC-CCcc
Confidence 99999999999999999998644 4443
No 118
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.05 E-value=0.00098 Score=77.69 Aligned_cols=211 Identities=9% Similarity=0.037 Sum_probs=150.4
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHH--hhhCCCCc-----------
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRY--ACIVPRAD----------- 221 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~--~~~~p~~~----------- 221 (850)
++++..+...+...+++++|+++.+..++.. |+....++..+..+.+.++++.+..+ ...++.+.
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~ 108 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDK 108 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHH
Confidence 5666666677778999999999999777655 88888888888888888887766543 23334433
Q ss_pred --------chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CcC
Q 003082 222 --------ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV---TLN 290 (850)
Q Consensus 222 --------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~pd 290 (850)
.++..|+.+|-+.|+.++|..+|+++++.. +.|..+.|.+...|+.. ++++|.+++......-+ +++
T Consensus 109 i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~ 186 (906)
T PRK14720 109 ILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYV 186 (906)
T ss_pred HHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcch
Confidence 677889999999999999999999999976 35888999999999999 99999999988876421 111
Q ss_pred --HHHHHHHHHhhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHH
Q 003082 291 --IYVFNSLMNVNAHDLKFTLEVYKNMQKL-GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367 (850)
Q Consensus 291 --~~t~~~ll~~~~~~~~~a~~l~~~m~~~-g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~ 367 (850)
...|.-++..-..+++.-.++.+.+... |..--+.++-.|-..|-+.++++++..+++.+.+.. +-|.....
T Consensus 187 ~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-----~~n~~a~~ 261 (906)
T PRK14720 187 GIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-----NKNNKARE 261 (906)
T ss_pred HHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-----CcchhhHH
Confidence 1123333332333555556666666543 444455666667777778888888888888887632 22444555
Q ss_pred HHHHHHH
Q 003082 368 TIVKVFA 374 (850)
Q Consensus 368 ~li~~~~ 374 (850)
-++..|.
T Consensus 262 ~l~~~y~ 268 (906)
T PRK14720 262 ELIRFYK 268 (906)
T ss_pred HHHHHHH
Confidence 5665554
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.05 E-value=0.00081 Score=65.33 Aligned_cols=167 Identities=11% Similarity=-0.002 Sum_probs=124.1
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHH
Q 003082 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296 (850)
Q Consensus 217 ~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 296 (850)
-|.+..+ ..+...+.-.|+-+.+..+....... ...+....+..+....+.|++.+|...|.+....
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l----------- 129 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL----------- 129 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-----------
Confidence 3444455 56667777777777777666654432 2235556666777778888888888888776642
Q ss_pred HHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhc
Q 003082 297 LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376 (850)
Q Consensus 297 ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~ 376 (850)
-++|...||.+--+|.+.|++++|..-|.+..++ ..-+...+|.|.-.|.-.
T Consensus 130 -----------------------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L-----~~~~p~~~nNlgms~~L~ 181 (257)
T COG5010 130 -----------------------APTDWEAWNLLGAALDQLGRFDEARRAYRQALEL-----APNEPSIANNLGMSLLLR 181 (257)
T ss_pred -----------------------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh-----ccCCchhhhhHHHHHHHc
Confidence 2678889999999999999999999999888874 233456778888888889
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003082 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425 (850)
Q Consensus 377 g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 425 (850)
|+++.|..++......+.. |...-..+.......|++++|..+...-.
T Consensus 182 gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 182 GDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred CCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 9999999999888876544 67777788888889999999988876554
No 120
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.04 E-value=9.6e-05 Score=67.92 Aligned_cols=88 Identities=11% Similarity=-0.044 Sum_probs=57.3
Q ss_pred hhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHH
Q 003082 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (850)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (850)
+...|++++|+..|+++. .+.|+. .+++...+..+...|++++|+..|++..... |++
T Consensus 34 ~~~~g~~~~A~~~~~~al--~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~--p~~------------ 91 (144)
T PRK15359 34 SWQEGDYSRAVIDFSWLV--MAQPWS------WRAHIALAGTWMMLKEYTTAINFYGHALMLD--ASH------------ 91 (144)
T ss_pred HHHcCCHHHHHHHHHHHH--HcCCCc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCC------------
Confidence 346777777777777777 445654 4455555555666777777777777776543 444
Q ss_pred cCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003082 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH 250 (850)
Q Consensus 203 ~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 250 (850)
..++..++..+.+.|++++|+..|+..++.
T Consensus 92 ------------------~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 92 ------------------PEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred ------------------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 355666666666677777777777776664
No 121
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.04 E-value=6.7e-06 Score=54.63 Aligned_cols=33 Identities=33% Similarity=0.583 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003082 585 AYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPN 617 (850)
Q Consensus 585 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 617 (850)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.02 E-value=0.0035 Score=73.21 Aligned_cols=235 Identities=11% Similarity=0.065 Sum_probs=140.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH---HHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003082 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI---YVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILL 331 (850)
Q Consensus 255 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~---~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll 331 (850)
+...+..|+..|...+++++|.++.+...+. .|+. ..+..++....++...+.-+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 4556667777776777777777777655543 3332 33333322222222221111 344
Q ss_pred HHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 003082 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411 (850)
Q Consensus 332 ~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 411 (850)
.......++.....++..|.. ..-+...+-.+..+|-+.|+.++|..+++++++.... |....|.+...|+..
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~------~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILL------YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE 163 (906)
T ss_pred hhcccccchhHHHHHHHHHHh------hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh
Confidence 444444455444444445544 2334556777778888888888888888888887744 788888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhccccc
Q 003082 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491 (850)
Q Consensus 412 g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (850)
++++|..++.+.... |....++..+.++|..+....
T Consensus 164 -dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~---------------------------- 199 (906)
T PRK14720 164 -DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN---------------------------- 199 (906)
T ss_pred -hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC----------------------------
Confidence 888888888777653 666678888888888776542
Q ss_pred CCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhccHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 003082 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTV-GLSPNHISWTILIDACGGSGNVEGALQI 570 (850)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~a~~l~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~A~~l 570 (850)
|+ +++.-..+.+.+... |..--+.++--+-..|-+..+++++..+
T Consensus 200 ---------------------~~-------------d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i 245 (906)
T PRK14720 200 ---------------------SD-------------DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI 245 (906)
T ss_pred ---------------------cc-------------cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence 11 111222233333322 2223344555566667777778888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHH
Q 003082 571 LKIMREDGMSPDVVAYTTAIKVCV 594 (850)
Q Consensus 571 ~~~m~~~g~~pd~~ty~~li~~~~ 594 (850)
|+.+.+.. +-|.....-++.+|.
T Consensus 246 LK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 246 LKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhcC-CcchhhHHHHHHHHH
Confidence 88887753 225555666666665
No 123
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.0018 Score=62.91 Aligned_cols=243 Identities=12% Similarity=0.074 Sum_probs=134.4
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCc-chHHHHHHHHHhcCChHHHH-HHHH
Q 003082 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD-ILFCNFVREFGKKRDLVSAL-RAYD 245 (850)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~-~~~~~li~~~~~~g~~~~A~-~~~~ 245 (850)
.|.+-.++...+.... .+.......++.++|.-.|.+...+.-.......+ .+.-.+...+...++-++-+ ++.+
T Consensus 21 ~Gnyq~~ine~~~~~~---~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E 97 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSS---SKTDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYE 97 (299)
T ss_pred hhHHHHHHHHHHhhcc---ccchhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHH
Confidence 4777766665544322 23445556677788887777655433222211111 11222222222333333333 3445
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHH
Q 003082 246 ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMA 325 (850)
Q Consensus 246 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~ 325 (850)
.+.......+......-...|...|++++|+..... |-..+....+.-|.....+.+.|.+.+++|... .+..
T Consensus 98 ~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~ 170 (299)
T KOG3081|consen 98 LVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL----GENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDA 170 (299)
T ss_pred HHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHH
Confidence 555443333433333334557888889988888765 223455555555555666777777777777763 2556
Q ss_pred HHHHHHHHHHH----cCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003082 326 SYNILLKACCL----AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401 (850)
Q Consensus 326 t~~~Ll~~~~~----~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty 401 (850)
|.+-|..++.+ .+.+.+|.-+|++|.+ ...|+..+.+-...++...|++++|..++++.+..... +..|.
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~-----k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL 244 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSE-----KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETL 244 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhc-----ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHH
Confidence 66656555553 3456677777777654 24666666676666677777777777777777665544 45555
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHH
Q 003082 402 SSLINACANAGL-VEQAMHLFEEMLQ 426 (850)
Q Consensus 402 ~~li~~~~~~g~-~~~A~~l~~~m~~ 426 (850)
..+|-+-...|. .+...+.+.++..
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 555544444443 3334444455443
No 124
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.00 E-value=0.055 Score=61.53 Aligned_cols=441 Identities=11% Similarity=0.114 Sum_probs=247.9
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHH--HcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHH
Q 003082 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC--VNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSA 240 (850)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A 240 (850)
+.+++..|+....++++.. |+.. +..+++++ .+.|..++|....+.. +.++.+...+-..|.+.++.++|
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~~--~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNAL--YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCcH--HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 4688899999999988765 5543 44555554 6899999999877653 45667888899999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhc----C--------ChHHH
Q 003082 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA----H--------DLKFT 308 (850)
Q Consensus 241 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~----~--------~~~~a 308 (850)
..+|++.... .|+......+..+|.+.+.+.+-.+.=-+|-+. ++-+.+.|-++++... + -...|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 9999998874 477777777778899988876544443333332 2334566656655421 1 13457
Q ss_pred HHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChHHHHHHHH-HHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHH
Q 003082 309 LEVYKNMQKLG-VMADMASYNILLKACCLAGNTVLAQEIYG-EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386 (850)
Q Consensus 309 ~~l~~~m~~~g-~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~-~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~ 386 (850)
.+.++.+.+.+ -.-+..-.-.-...+...|++++|++++. ..... ....+...-+.-+..+...++|.+..++-
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~----l~~~~~~l~~~~~dllk~l~~w~~l~~l~ 249 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEK----LTSANLYLENKKLDLLKLLNRWQELFELS 249 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh----ccccchHHHHHHHHHHHHhcChHHHHHHH
Confidence 78888887654 22233333334455667899999999984 22221 12334444556778889999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HHhC
Q 003082 387 EDMLSAGVTPNTITWSSLINACANA----------------GLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC---VEAC 447 (850)
Q Consensus 387 ~~m~~~g~~p~~~ty~~li~~~~~~----------------g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~---~~~g 447 (850)
.++...|.. | |.+.++.+++. +..+...+...+..... .-+ .|-+=+.++ ..-|
T Consensus 250 ~~Ll~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~-~Rg--p~LA~lel~kr~~~~g 322 (932)
T KOG2053|consen 250 SRLLEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK-SRG--PYLARLELDKRYKLIG 322 (932)
T ss_pred HHHHHhCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc-ccC--cHHHHHHHHHHhcccC
Confidence 999988643 3 44444433321 12222222222222221 111 122222222 2346
Q ss_pred CHHHHHHHH-HHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCccccccccc-CCCcCH---------H
Q 003082 448 QFDRAFRLF-RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF-SFKPTT---------T 516 (850)
Q Consensus 448 ~~~~A~~l~-~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~---------~ 516 (850)
+.+++.-.| +..-... ....+.... ...+.......++... +..++. .
T Consensus 323 d~ee~~~~y~~kfg~kp---cc~~Dl~~y------------------l~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h 381 (932)
T KOG2053|consen 323 DSEEMLSYYFKKFGDKP---CCAIDLNHY------------------LGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQH 381 (932)
T ss_pred ChHHHHHHHHHHhCCCc---HhHhhHHHh------------------hccCCHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 666654433 2221110 000000000 0000000000000000 111222 2
Q ss_pred HHHHHHHHHhcc-----HHHHHHHHHHHH---Hc------CCCCCHHH---------HHHHHHHHHcCCCHH---HHHHH
Q 003082 517 TYNILMKACCTD-----YYRVKALMNEMR---TV------GLSPNHIS---------WTILIDACGGSGNVE---GALQI 570 (850)
Q Consensus 517 t~~~li~~~~~~-----~~~a~~l~~~m~---~~------g~~p~~~t---------y~~li~~~~~~g~~~---~A~~l 570 (850)
+.+..+...++. .+....++.+.. +. ++-|+..+ -+.|++.|-+.++.. +|+-+
T Consensus 382 ~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~L 461 (932)
T KOG2053|consen 382 LCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITL 461 (932)
T ss_pred HHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 344444444442 233334443222 22 34455443 367888888888766 34444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 003082 571 LKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMW 648 (850)
Q Consensus 571 ~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~ 648 (850)
++.-.... +-|..+--.+|..|+--|-+..|.++|+.|--+.|+-|..-|..+ +-+...|++..+.....-.-.|-
T Consensus 462 LE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~-~~~~t~g~~~~~s~~~~~~lkfy 537 (932)
T KOG2053|consen 462 LENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIF-RRAETSGRSSFASNTFNEHLKFY 537 (932)
T ss_pred HHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHH-HHHHhcccchhHHHHHHHHHHHH
Confidence 44444321 234445556788999999999999999999877787777666544 44455677776554433333333
No 125
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.99 E-value=0.00011 Score=67.49 Aligned_cols=117 Identities=10% Similarity=-0.011 Sum_probs=86.5
Q ss_pred HHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHH
Q 003082 133 VGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIR 212 (850)
Q Consensus 133 ~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 212 (850)
...|++++ .+.|+. +...+..+...|++++|+..|+..+... |
T Consensus 13 ~~~~~~al--~~~p~~---------~~~~g~~~~~~g~~~~A~~~~~~al~~~--P------------------------ 55 (144)
T PRK15359 13 EDILKQLL--SVDPET---------VYASGYASWQEGDYSRAVIDFSWLVMAQ--P------------------------ 55 (144)
T ss_pred HHHHHHHH--HcCHHH---------HHHHHHHHHHcCCHHHHHHHHHHHHHcC--C------------------------
Confidence 34566666 445543 1223344556788888888887776543 3
Q ss_pred HhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHH
Q 003082 213 YACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292 (850)
Q Consensus 213 ~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 292 (850)
.+..++..++.++.+.|++++|+..|+...... +.+...+..+..++...|++++|...|+...+. .|+..
T Consensus 56 ------~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~ 126 (144)
T PRK15359 56 ------WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYADA 126 (144)
T ss_pred ------CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCh
Confidence 334677889999999999999999999999854 257788999999999999999999999999876 46544
Q ss_pred HHH
Q 003082 293 VFN 295 (850)
Q Consensus 293 t~~ 295 (850)
.+.
T Consensus 127 ~~~ 129 (144)
T PRK15359 127 SWS 129 (144)
T ss_pred HHH
Confidence 443
No 126
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.98 E-value=0.00017 Score=60.19 Aligned_cols=84 Identities=20% Similarity=0.347 Sum_probs=67.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCh--H---HHHHHHHHHHHHHHcCCCCCHHHHH
Q 003082 587 TTAIKVCVRSKRLKQAFSLFEEMKHYQI-QPNLVTYITLLRARSRYGSL--H---EVQQCLAVYQDMWKAGYKANDTYLK 660 (850)
Q Consensus 587 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~li~a~~~~g~~--~---~a~~a~~l~~~M~~~g~~p~~~~~~ 660 (850)
...|..|...|++.....+|+.+++.|+ .|+..+|+.++++.++..-- + +.-+.+.+|+.|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456666677888889999999999888 88999999999888765321 1 3456788999999999999999999
Q ss_pred HHHHHHHhhh
Q 003082 661 ELIEEWCEGV 670 (850)
Q Consensus 661 ~li~~~~~~~ 670 (850)
.++..+++|-
T Consensus 109 ivl~~LlkgS 118 (120)
T PF08579_consen 109 IVLGSLLKGS 118 (120)
T ss_pred HHHHHHHHhh
Confidence 9999888763
No 127
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.97 E-value=0.00065 Score=79.59 Aligned_cols=214 Identities=10% Similarity=0.015 Sum_probs=141.9
Q ss_pred hhccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHH
Q 003082 60 LSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKL 139 (850)
Q Consensus 60 l~~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~ 139 (850)
.+.++.+|++ .-.|.......+..+..+.|.+++++++..-.-.+.-.-+-.|..+-++-. .-|.-+...++|+++
T Consensus 1448 erlvrssPNS-Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn---~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1448 ERLVRSSPNS-SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLEN---AYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHhcCCCc-chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHH---hhCcHHHHHHHHHHH
Confidence 3456778888 778888899999999999999999999875311111111111222222222 336777888999998
Q ss_pred HHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh---
Q 003082 140 NELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI--- 216 (850)
Q Consensus 140 ~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--- 216 (850)
.+ +...+..+..++..|.+.+.+++|.++|+.|.+..- .....|...+..+.++.+-+.|..++..
T Consensus 1524 cq---------ycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1524 CQ---------YCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred HH---------hcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 85 223377888899999999999999999999987542 3344566666666666666666555433
Q ss_pred -CCCCc--chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc
Q 003082 217 -VPRAD--ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL 289 (850)
Q Consensus 217 -~p~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 289 (850)
+|... ....-.+..-.+.|+.+.+..+|+..+...+ --...|+..|+.-.+.|+.+.+..+|++....++.|
T Consensus 1593 ~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1593 SLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 35432 2333455556667777777777777665422 245567777777777777777777777776665544
No 128
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.96 E-value=0.0008 Score=68.09 Aligned_cols=191 Identities=12% Similarity=0.039 Sum_probs=108.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-cCH-HHHHHH
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSS-P-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNI-YVFNSL 297 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd~-~t~~~l 297 (850)
..+..++..+...|++++|...|+++....+. | ...++..+..++...|++++|...|+.+.+.... +.. .++..+
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~ 113 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLR 113 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHH
Confidence 56777888899999999999999998875321 1 1246777888899999999999999998865221 111 011111
Q ss_pred HHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCH-hHHHHHHHHHHhc
Q 003082 298 MNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-FTYSTIVKVFADA 376 (850)
Q Consensus 298 l~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~-~ty~~li~~~~~~ 376 (850)
-.++ ++. +...+...|+.++|.+.|+.+... .|+. ..+..+... ..
T Consensus 114 g~~~----------~~~---------------~~~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~a~~~~-~~- 160 (235)
T TIGR03302 114 GLSN----------YNQ---------------IDRVDRDQTAAREAFEAFQELIRR------YPNSEYAPDAKKRM-DY- 160 (235)
T ss_pred HHHH----------HHh---------------cccccCCHHHHHHHHHHHHHHHHH------CCCChhHHHHHHHH-HH-
Confidence 0000 000 000112236677777777777652 3332 222211111 00
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCHHHHHH
Q 003082 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC--EPNSQCCNILLQACVEACQFDRAFR 454 (850)
Q Consensus 377 g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~A~~ 454 (850)
.... . ......+...+.+.|++++|...++...+..- +.....+..+..++.+.|++++|..
T Consensus 161 --~~~~------~--------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~ 224 (235)
T TIGR03302 161 --LRNR------L--------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQD 224 (235)
T ss_pred --HHHH------H--------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 0000 0 00112344566777777777777777766521 1123566677777777777777777
Q ss_pred HHHHHhh
Q 003082 455 LFRSWTL 461 (850)
Q Consensus 455 l~~~m~~ 461 (850)
.++.+..
T Consensus 225 ~~~~l~~ 231 (235)
T TIGR03302 225 AAAVLGA 231 (235)
T ss_pred HHHHHHh
Confidence 7766554
No 129
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.96 E-value=0.071 Score=61.26 Aligned_cols=178 Identities=8% Similarity=0.034 Sum_probs=126.2
Q ss_pred CchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCC
Q 003082 127 GRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPD 206 (850)
Q Consensus 127 g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (850)
.+...|+..|-++. .+.|+ ....+..+... |.+.-+...|.+.|.+.-+. .+.+...+..+...|++..+
T Consensus 472 K~~~~al~ali~al--rld~~---~apaf~~LG~i---Yrd~~Dm~RA~kCf~KAFeL--Datdaeaaaa~adtyae~~~ 541 (1238)
T KOG1127|consen 472 KNSALALHALIRAL--RLDVS---LAPAFAFLGQI---YRDSDDMKRAKKCFDKAFEL--DATDAEAAAASADTYAEEST 541 (1238)
T ss_pred hhHHHHHHHHHHHH--hcccc---hhHHHHHHHHH---HHHHHHHHHHHHHHHHHhcC--CchhhhhHHHHHHHhhcccc
Confidence 45777888887777 33443 22334444444 33444778889999876544 47788888999999999999
Q ss_pred hHHHHHHhhhC----CCCc--chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003082 207 VNLAIRYACIV----PRAD--ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280 (850)
Q Consensus 207 ~~~A~~~~~~~----p~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 280 (850)
+++|....-.. |... ..|-...-.|...++...|+.-|+...+..+ .|...|..++.+|..+|++..|+.+|+
T Consensus 542 we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~ 620 (1238)
T KOG1127|consen 542 WEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFT 620 (1238)
T ss_pred HHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhh
Confidence 99998873222 2111 2233366778888999999999999887532 478899999999999999999999998
Q ss_pred HHHhCCCCcCH---HHHHHHHHhhcCChHHHHHHHHHHHH
Q 003082 281 DLRSQNVTLNI---YVFNSLMNVNAHDLKFTLEVYKNMQK 317 (850)
Q Consensus 281 ~m~~~g~~pd~---~t~~~ll~~~~~~~~~a~~l~~~m~~ 317 (850)
..... .|+. ..+-+.+..-.|.+.+++..+.....
T Consensus 621 kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 621 KASLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred hhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 87654 4543 33445555566788888887777654
No 130
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.95 E-value=1.2e-05 Score=52.94 Aligned_cols=32 Identities=28% Similarity=0.679 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 003082 585 AYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP 616 (850)
Q Consensus 585 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 616 (850)
+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
No 131
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.91 E-value=1.8e-05 Score=52.49 Aligned_cols=33 Identities=30% Similarity=0.545 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003082 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397 (850)
Q Consensus 365 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 397 (850)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455556666666666666666666655555554
No 132
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.89 E-value=0.00071 Score=65.69 Aligned_cols=119 Identities=10% Similarity=-0.008 Sum_probs=56.9
Q ss_pred hhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHH
Q 003082 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVS 239 (850)
Q Consensus 164 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~ 239 (850)
.+.-.|+-+....+........ +.+.......++...+.|++..|+..++++ |++..+|+.+.-+|.+.|++++
T Consensus 75 a~~~~G~a~~~l~~~~~~~~~~--~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~ 152 (257)
T COG5010 75 ALYLRGDADSSLAVLQKSAIAY--PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDE 152 (257)
T ss_pred HHHhcccccchHHHHhhhhccC--cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhH
Confidence 3334455555555555433222 333333333455555555555555554442 4444555555555555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 240 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
|..-|.+..+..+ -+...+|.|.-.|.-.|+++.|..++......
T Consensus 153 Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 153 ARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred HHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 5555555554311 23334444444455555555555555544443
No 133
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.89 E-value=0.056 Score=57.97 Aligned_cols=126 Identities=13% Similarity=0.125 Sum_probs=81.9
Q ss_pred HHHHHHHHhc--cHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 003082 518 YNILMKACCT--DYYRVKALMNEMRTVGLSP-NHISWTILIDACGGSGNVEGALQILKIMREDGMSPDV-VAYTTAIKVC 593 (850)
Q Consensus 518 ~~~li~~~~~--~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~ty~~li~~~ 593 (850)
|...|+.-.+ ..+.|..+|.+..+.+..+ ++.++++++.-||. ++.+-|.++|+-=.++ -+|. .--...++-+
T Consensus 369 ~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 369 YCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK--FGDSPEYVLKYLDFL 445 (656)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh--cCCChHHHHHHHHHH
Confidence 4444444332 3567777888877777666 66677777777764 5667777777754432 2233 3335666777
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 003082 594 VRSKRLKQAFSLFEEMKHYQIQPN--LVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649 (850)
Q Consensus 594 ~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~ 649 (850)
...++-..|..+|++....++.|+ ...|..+|.-=+..|++.. ++++-+++..
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s---i~~lekR~~~ 500 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS---ILKLEKRRFT 500 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH---HHHHHHHHHH
Confidence 777777788888888877766554 5678888887777888766 4445555543
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.88 E-value=0.00046 Score=72.73 Aligned_cols=140 Identities=11% Similarity=0.027 Sum_probs=65.5
Q ss_pred HHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHH
Q 003082 79 SKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLL 158 (850)
Q Consensus 79 ~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l 158 (850)
-.+...|++++|+..++.+++. .|+..... ......+...++.++|.+.++++. ...|+. .-+.
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~------~~~~~i~~~~nk~~~A~e~~~kal--~l~P~~------~~l~ 377 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAA--QPDNPYYL------ELAGDILLEANKAKEAIERLKKAL--ALDPNS------PLLQ 377 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHh--CCCCHHHH------HHHHHHHHHcCChHHHHHHHHHHH--hcCCCc------cHHH
Confidence 3334445555555555555554 23221111 111122335555555555555555 334443 1122
Q ss_pred HHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChH
Q 003082 159 KNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLV 238 (850)
Q Consensus 159 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~ 238 (850)
++.+..|.+.|+..+|+..+....... |+++..|..++++|...|+..+|... ....|...|+++
T Consensus 378 ~~~a~all~~g~~~eai~~L~~~~~~~--p~dp~~w~~LAqay~~~g~~~~a~~A-------------~AE~~~~~G~~~ 442 (484)
T COG4783 378 LNLAQALLKGGKPQEAIRILNRYLFND--PEDPNGWDLLAQAYAELGNRAEALLA-------------RAEGYALAGRLE 442 (484)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcC--CCCchHHHHHHHHHHHhCchHHHHHH-------------HHHHHHhCCCHH
Confidence 333444445555555555555554433 55555555555555555555544332 233444555555
Q ss_pred HHHHHHHHHHh
Q 003082 239 SALRAYDASKK 249 (850)
Q Consensus 239 ~A~~~~~~m~~ 249 (850)
+|+..+....+
T Consensus 443 ~A~~~l~~A~~ 453 (484)
T COG4783 443 QAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.86 E-value=0.00018 Score=65.60 Aligned_cols=116 Identities=10% Similarity=0.031 Sum_probs=72.5
Q ss_pred HHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHh
Q 003082 135 VLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYA 214 (850)
Q Consensus 135 ~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 214 (850)
.|++++ ...|+. ...+...+..+...|++++|.+.++.+.... |++.
T Consensus 5 ~~~~~l--~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~----------------------- 51 (135)
T TIGR02552 5 TLKDLL--GLDSEQ------LEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNS----------------------- 51 (135)
T ss_pred hHHHHH--cCChhh------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcH-----------------------
Confidence 455555 445654 3344555556667788888888888876654 4333
Q ss_pred hhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHH
Q 003082 215 CIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV 293 (850)
Q Consensus 215 ~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t 293 (850)
..+..+...|.+.|++++|...|++..+.+ +.+...+..+...|...|++++|...|+...+. .|+...
T Consensus 52 -------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 120 (135)
T TIGR02552 52 -------RYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPE 120 (135)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccch
Confidence 455566666666777777777777666543 234555666666677777777777777766654 344443
No 136
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.86 E-value=0.0084 Score=70.75 Aligned_cols=225 Identities=13% Similarity=0.056 Sum_probs=159.2
Q ss_pred hhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 003082 214 ACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-----NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT 288 (850)
Q Consensus 214 ~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 288 (850)
...-|.+...|..-|..+...++.+.|++++++.+.. +.+ -...|.++++.-...|.-+...++|++..+.
T Consensus 1451 vrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--- 1526 (1710)
T KOG1070|consen 1451 VRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--- 1526 (1710)
T ss_pred HhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---
Confidence 3334777788888888899999999999999988764 211 2346777777666677788888889888764
Q ss_pred cCH-HHHHHHHHhhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccC---
Q 003082 289 LNI-YVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD--- 362 (850)
Q Consensus 289 pd~-~t~~~ll~~~~--~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d--- 362 (850)
.|. ..|..|...|. +..++|.++++.|.+.- .-...+|..++..+.+..+-+.|..++.+..+ .-|.
T Consensus 1527 cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~------~lPk~eH 1599 (1710)
T KOG1070|consen 1527 CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALK------SLPKQEH 1599 (1710)
T ss_pred cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHh------hcchhhh
Confidence 343 33555555554 58888889999887642 24677888888888888888888888887766 2343
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHH
Q 003082 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ--CCNILL 440 (850)
Q Consensus 363 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--~~~~ll 440 (850)
+....-.+..-.+.|+.+.+..+|+..+..-.+ -...|+..|+.-.+.|+.+.+..+|+.....++.|--. .|.--+
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwL 1678 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWL 1678 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHH
Confidence 223344444556788888889999888876544 56789999999999999999999999988887665432 344444
Q ss_pred HHHHHhCCHH
Q 003082 441 QACVEACQFD 450 (850)
Q Consensus 441 ~~~~~~g~~~ 450 (850)
..=-+.|+-.
T Consensus 1679 eyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1679 EYEKSHGDEK 1688 (1710)
T ss_pred HHHHhcCchh
Confidence 3333344433
No 137
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.86 E-value=0.0011 Score=73.11 Aligned_cols=229 Identities=10% Similarity=0.066 Sum_probs=180.6
Q ss_pred HHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003082 195 FRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274 (850)
Q Consensus 195 ~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 274 (850)
-.++..+.+.|-.+.|+..|++. ..+..+|..|+..|+..+|..+..+-.+ -+|+...|-.+.+......-+++
T Consensus 402 ~~laell~slGitksAl~I~Erl----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEk 475 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEK 475 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHH
Confidence 35678889999999999999875 6788899999999999999999888777 35889999999999888888999
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 003082 275 SRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354 (850)
Q Consensus 275 A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~ 354 (850)
|.++++..-.+ ..-+-...-...+++.++.+.|+.-.+.+ +.-..+|-.+-.+..+.++++.|.+.|..-..
T Consensus 476 awElsn~~sar-----A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvt-- 547 (777)
T KOG1128|consen 476 AWELSNYISAR-----AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT-- 547 (777)
T ss_pred HHHHhhhhhHH-----HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--
Confidence 99999875432 11111111112468999999998877654 34567888888888899999999999988776
Q ss_pred hcCCcccC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC
Q 003082 355 AKGVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG-CEPN 432 (850)
Q Consensus 355 ~~g~~~~d-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~ 432 (850)
..|| ...||.+-.+|.+.|+-.+|...+.+..+.+ .-+...|-..+....+.|.+++|++.+..+.+.. ...|
T Consensus 548 ----L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d 622 (777)
T KOG1128|consen 548 ----LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKD 622 (777)
T ss_pred ----cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhccc
Confidence 4566 4579999999999999999999999999887 4467778888888899999999999999887632 1224
Q ss_pred HHHHHHHHHH
Q 003082 433 SQCCNILLQA 442 (850)
Q Consensus 433 ~~~~~~ll~~ 442 (850)
..+...++..
T Consensus 623 ~~vl~~iv~~ 632 (777)
T KOG1128|consen 623 DEVLLIIVRT 632 (777)
T ss_pred chhhHHHHHH
Confidence 4444444443
No 138
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.85 E-value=2.4e-05 Score=51.51 Aligned_cols=33 Identities=33% Similarity=0.740 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 003082 549 ISWTILIDACGGSGNVEGALQILKIMREDGMSP 581 (850)
Q Consensus 549 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 581 (850)
.+|+++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999987
No 139
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.82 E-value=0.00087 Score=70.69 Aligned_cols=136 Identities=10% Similarity=-0.001 Sum_probs=99.8
Q ss_pred hhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHH
Q 003082 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVS 239 (850)
Q Consensus 164 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~ 239 (850)
.+...|++++|+..+..++... |+++..+...+..+.+.++.++|.+.++.+ |.......++..+|.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~--P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ--PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 3445678888888888877654 788877778888888888888888777663 6666777778888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHc
Q 003082 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL 318 (850)
Q Consensus 240 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~ 318 (850)
|+.+++..... .+-|...|..|..+|...|+..++..-..+.. .+.|+++.|+..+....+.
T Consensus 393 ai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~----------------~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 393 AIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEGY----------------ALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHHH----------------HhCCCHHHHHHHHHHHHHh
Confidence 88888877764 33567788888888888888888777766654 3456777777666666553
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.73 E-value=0.00042 Score=63.10 Aligned_cols=112 Identities=9% Similarity=0.053 Sum_probs=84.4
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-cCHHHHHH
Q 003082 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNIYVFNS 296 (850)
Q Consensus 218 p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd~~t~~~ 296 (850)
|.+......++..+...|++++|...|+.+...+ +.+...+..+...+.+.|++++|...|+...+.+.. ++...+-.
T Consensus 14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la 92 (135)
T TIGR02552 14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAA 92 (135)
T ss_pred hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 3333556678888999999999999999998864 347788999999999999999999999998876432 23333334
Q ss_pred HHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003082 297 LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332 (850)
Q Consensus 297 ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~ 332 (850)
.+....|+.+.|...|+...+.. |+...+..+..
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 126 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEIC--GENPEYSELKE 126 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhc--cccchHHHHHH
Confidence 44456789999999999998863 56555544443
No 141
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.69 E-value=0.0003 Score=63.65 Aligned_cols=94 Identities=16% Similarity=0.099 Sum_probs=68.9
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHH
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVRE 230 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~ 230 (850)
++.+...+..+...|++++|..+|+-+.... |.+...|..++..+-..|++.+|+..|... |+++..+..+...
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 6666666777778999999999999888765 767777777777777777777777766553 6666677777777
Q ss_pred HHhcCChHHHHHHHHHHHhC
Q 003082 231 FGKKRDLVSALRAYDASKKH 250 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~ 250 (850)
+...|+.+.|++.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777665553
No 142
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.67 E-value=4.1e-05 Score=49.11 Aligned_cols=29 Identities=21% Similarity=0.465 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003082 585 AYTTAIKVCVRSKRLKQAFSLFEEMKHYQ 613 (850)
Q Consensus 585 ty~~li~~~~~~g~~~~A~~l~~~m~~~g 613 (850)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 44445555555555555555555544443
No 143
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.66 E-value=0.0023 Score=66.52 Aligned_cols=179 Identities=16% Similarity=0.115 Sum_probs=100.3
Q ss_pred CCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCC
Q 003082 66 DLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA 145 (850)
Q Consensus 66 ~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~ 145 (850)
+.+.+.+.|...+..|-..|++++|...|.+............. ....+......+ +.+++++|+..|+++.+
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~--Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~---- 102 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFE--AAKAYEEAANCY-KKGDPDEAIECYEKAIE---- 102 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHH--HHHHHHHHHHHH-HHTTHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHHH-HhhCHHHHHHHHHHHHH----
Confidence 34456899999999999999999999999998765422111111 112222222222 44477777777776663
Q ss_pred CccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcC-CChHHHHHHhhhC-------
Q 003082 146 PLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK-PDVNLAIRYACIV------- 217 (850)
Q Consensus 146 p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~------- 217 (850)
.|...|++..|..++..+ +..|... |+++.|+++|..+
T Consensus 103 ------------------~y~~~G~~~~aA~~~~~l----------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e 148 (282)
T PF14938_consen 103 ------------------IYREAGRFSQAAKCLKEL----------------AEIYEEQLGDYEKAIEYYQKAAELYEQE 148 (282)
T ss_dssp ------------------HHHHCT-HHHHHHHHHHH----------------HHHHCCTT--HHHHHHHHHHHHHHHHHT
T ss_pred ------------------HHHhcCcHHHHHHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 233456655555544432 3334344 4555555544332
Q ss_pred CCC---cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 218 PRA---DILFCNFVREFGKKRDLVSALRAYDASKKHLSS-----PNMY-ICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 218 p~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
... ...+..++..+.+.|++++|.++|+++...... .+.. .|-..+-++...|++..|...|++....
T Consensus 149 ~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 149 GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 100 134556778888888888888888887664322 1222 2222333455667888888888877654
No 144
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.63 E-value=0.00069 Score=56.69 Aligned_cols=80 Identities=16% Similarity=0.338 Sum_probs=62.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHCCCCCCHHHH
Q 003082 551 WTILIDACGGSGNVEGALQILKIMREDGM-SPDVVAYTTAIKVCVRSK--------RLKQAFSLFEEMKHYQIQPNLVTY 621 (850)
Q Consensus 551 y~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~ty~~li~~~~~~g--------~~~~A~~l~~~m~~~g~~p~~~t~ 621 (850)
-...|..+...|++...-.+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.+|+.|...+++|+..||
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666666888888888888888888 788888888888777643 345678888999998899999999
Q ss_pred HHHHHHHHh
Q 003082 622 ITLLRARSR 630 (850)
Q Consensus 622 ~~li~a~~~ 630 (850)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988765
No 145
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.63 E-value=0.0005 Score=65.04 Aligned_cols=88 Identities=24% Similarity=0.311 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----------------CCHHHHHH
Q 003082 546 PNHISWTILIDACGG-----SGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRS----------------KRLKQAFS 604 (850)
Q Consensus 546 p~~~ty~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~----------------g~~~~A~~ 604 (850)
.|..+|..+|+.|.+ .|.++=....+..|.+.|+.-|..+|+.|++.+=+. .+.+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 355566666666553 355665666666666666666666666666655432 24567899
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003082 605 LFEEMKHYQIQPNLVTYITLLRARSRYGS 633 (850)
Q Consensus 605 l~~~m~~~g~~p~~~t~~~li~a~~~~g~ 633 (850)
++++|...|+.||..|+..|++.+.+.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 99999999999999999999999877765
No 146
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.57 E-value=7.6e-05 Score=47.84 Aligned_cols=31 Identities=32% Similarity=0.581 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 003082 549 ISWTILIDACGGSGNVEGALQILKIMREDGM 579 (850)
Q Consensus 549 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~ 579 (850)
++|+++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3799999999999999999999999998874
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.56 E-value=0.0018 Score=59.72 Aligned_cols=56 Identities=9% Similarity=-0.015 Sum_probs=30.2
Q ss_pred hcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCC
Q 003082 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (850)
Q Consensus 125 ~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (850)
..++...+...++.+.+. .|+. +......+.++..+...|++++|...|+.+....
T Consensus 23 ~~~~~~~~~~~~~~l~~~--~~~s---~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~ 78 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD--YPSS---PYAALAALQLAKAAYEQGDYDEAKAALEKALANA 78 (145)
T ss_pred HCCCHHHHHHHHHHHHHH--CCCC---hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 346666666666666643 3332 1112233334455566677777777777666543
No 148
>smart00463 SMR Small MutS-related domain.
Probab=97.55 E-value=8.7e-05 Score=60.18 Aligned_cols=60 Identities=27% Similarity=0.249 Sum_probs=50.2
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEecCCcccccCcccchHHHHHHHHHhhh
Q 003082 712 LAIDLRGLTKVEARIIVLAVLRMMKENYSLGVPVKDDLMIVLGPNKVNKIQAKHDLEVKDAITKLLQD 779 (850)
Q Consensus 712 ~~~~l~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~i~~g~gk~s~~~g~~~~~v~~~v~~~l~~ 779 (850)
+.+|||||+..+|...+..++...+..... ..+.||||.|+||. .| .+.|+++|.+.|..
T Consensus 2 ~~lDLHG~~~~eA~~~l~~~l~~~~~~~~~-----~~~~II~G~G~~s~-~g--~~~i~~~l~~~l~~ 61 (80)
T smart00463 2 WSLDLHGLTVEEALTALDKFLNNARLKGLE-----QKLVIITGKGKHSL-GG--KSGVKPALKEHLRV 61 (80)
T ss_pred CeEEcCCCCHHHHHHHHHHHHHHHHHcCCC-----ceEEEEEcccCCCc-cc--hhhHHHHHHhchhh
Confidence 568999999999999999999988886321 46899999999998 45 37899999998863
No 149
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.062 Score=52.55 Aligned_cols=83 Identities=18% Similarity=0.172 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003082 562 GNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCL 641 (850)
Q Consensus 562 g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~~~g~~~~a~~a~ 641 (850)
+.+.+|.-+|++|.++ ..|+..+.|....++...|++++|..++++.....- -+..|...+|-+-...|+..++. -
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dpetL~Nliv~a~~~Gkd~~~~--~ 262 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDPETLANLIVLALHLGKDAEVT--E 262 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhCCChHHH--H
Confidence 4566666666666543 456666666666666666777777777776666432 34555555555555556554432 2
Q ss_pred HHHHHHH
Q 003082 642 AVYQDMW 648 (850)
Q Consensus 642 ~l~~~M~ 648 (850)
+.+.++.
T Consensus 263 r~l~QLk 269 (299)
T KOG3081|consen 263 RNLSQLK 269 (299)
T ss_pred HHHHHHH
Confidence 3444444
No 150
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.50 E-value=0.0012 Score=70.88 Aligned_cols=120 Identities=18% Similarity=0.189 Sum_probs=96.8
Q ss_pred CcCHHHHHHHHHHHhc--cHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003082 512 KPTTTTYNILMKACCT--DYYRVKALMNEMRTV--GLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYT 587 (850)
Q Consensus 512 ~p~~~t~~~li~~~~~--~~~~a~~l~~~m~~~--g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~ 587 (850)
+.+.....++++.+.. +.+.+..++...... ....-..|..++|..|.+.|..++++.+++.=...|+-||..+||
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 4566677777777764 577888888777764 222223456789999999999999999999888899999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003082 588 TAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRY 631 (850)
Q Consensus 588 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~~~ 631 (850)
.||+.+.+.|++..|.++..+|...+...+..|+.--+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999988888778888888888888777
No 151
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.48 E-value=0.0017 Score=69.72 Aligned_cols=127 Identities=13% Similarity=0.123 Sum_probs=106.6
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003082 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397 (850)
Q Consensus 318 ~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 397 (850)
.+.+.+......+++.+....+++++..++-........ ...-..|..++|+.|.+.|..++++.++..=...|+=||
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~--~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D 137 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNC--SYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPD 137 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCccc--ccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCC
Confidence 345667888888899988888899999988877653211 222234667999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 003082 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446 (850)
Q Consensus 398 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~ 446 (850)
.+|||.||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 138 ~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 138 NFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999999999888777888888888877776
No 152
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.021 Score=55.32 Aligned_cols=184 Identities=13% Similarity=0.093 Sum_probs=131.2
Q ss_pred hcCchhHHHHHHHHHHHc---C-CCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHH
Q 003082 125 REGRIDCVVGVLKKLNEL---G-VAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL 200 (850)
Q Consensus 125 ~~g~~~~A~~~l~~~~~~---~-~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (850)
...+.++.++++.+++.. | ..++. ..++=..+......|+.+.|..+++++...- |.+.-.--.-+..
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~------w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~ 95 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEI------WTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAML 95 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchH------HHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHH
Confidence 456788888888887653 3 34433 4555556666778899999999999987654 5543323333445
Q ss_pred HHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003082 201 CVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276 (850)
Q Consensus 201 ~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 276 (850)
+...|++++|+++++.+ |.+..++-.-+...-.+|+--+|++-+....+. +..|...|.-+...|...|++++|.
T Consensus 96 lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~ 174 (289)
T KOG3060|consen 96 LEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAA 174 (289)
T ss_pred HHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHH
Confidence 56789999999998775 444455655666777788888999888888775 5578999999999999999999999
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHH-h---hcC--ChHHHHHHHHHHHHcC
Q 003082 277 AIYEDLRSQNVTLNIYVFNSLMN-V---NAH--DLKFTLEVYKNMQKLG 319 (850)
Q Consensus 277 ~~~~~m~~~g~~pd~~t~~~ll~-~---~~~--~~~~a~~l~~~m~~~g 319 (850)
-.++++.-. .|-...|..-+. . .+| +...+.+.|.+-.+..
T Consensus 175 fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 175 FCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 999998855 555444433332 2 222 6777888888887754
No 153
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.39 E-value=0.29 Score=52.75 Aligned_cols=137 Identities=15% Similarity=0.213 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003082 531 RVKALMNEMRTV-GLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSP-DVVAYTTAIKVCVRSKRLKQAFSLFEE 608 (850)
Q Consensus 531 ~a~~l~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~ 608 (850)
....+++++... ...|+ .+|..+++.--+..-+..|..+|.+..+.+..+ ++..++++|.-|| .++..-|.++|+-
T Consensus 349 ~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeL 426 (656)
T KOG1914|consen 349 KVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFEL 426 (656)
T ss_pred hhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHH
Confidence 334444444432 23343 467778888888888999999999999988777 7888888988877 6788899999986
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHh-hhhhh
Q 003082 609 MKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKAN--DTYLKELIEEWCE-GVIQD 673 (850)
Q Consensus 609 m~~~g~~p~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~~g~~p~--~~~~~~li~~~~~-~~~~~ 673 (850)
=..+ ..-+..--...++-+++.++-.. +..+|++....++.|| ...|+.+|+-=.. |.+..
T Consensus 427 GLkk-f~d~p~yv~~YldfL~~lNdd~N---~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 427 GLKK-FGDSPEYVLKYLDFLSHLNDDNN---ARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred HHHh-cCCChHHHHHHHHHHHHhCcchh---HHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 5542 22334455667777777777544 6678999998888777 4578888874332 54443
No 154
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.38 E-value=0.0028 Score=67.68 Aligned_cols=126 Identities=13% Similarity=0.110 Sum_probs=67.3
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccc
Q 003082 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFD 151 (850)
Q Consensus 72 ~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~ 151 (850)
..-..|+..+...++++.|+.+|+++.+. +|+... . ++..+...++-.+|+.+++++++. .|..
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~--~pev~~------~---LA~v~l~~~~E~~AI~ll~~aL~~--~p~d--- 233 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER--DPEVAV------L---LARVYLLMNEEVEAIRLLNEALKE--NPQD--- 233 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc--CCcHHH------H---HHHHHHhcCcHHHHHHHHHHHHHh--CCCC---
Confidence 33344555555556666666666666665 333111 1 112223445556666666666632 3332
Q ss_pred hhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCC
Q 003082 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP 218 (850)
Q Consensus 152 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p 218 (850)
.+++.-.+..+.+.++++.|+++.+++.... |+....|..|+..|...|+++.|+...+.+|
T Consensus 234 ---~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 234 ---SELLNLQAEFLLSKKKYELALEIAKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 3334333444555666666666666666544 5555556666666666666666655555444
No 155
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.36 E-value=0.013 Score=60.90 Aligned_cols=200 Identities=11% Similarity=0.083 Sum_probs=116.2
Q ss_pred HhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHH
Q 003082 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (850)
Q Consensus 122 ~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (850)
.|-..|++++|.+.|.++.+.-...+. ....-..+..+...+.+ +++++|++.+++. +..|
T Consensus 44 ~fk~~~~~~~A~~ay~kAa~~~~~~~~--~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A----------------~~~y 104 (282)
T PF14938_consen 44 CFKLAKDWEKAAEAYEKAADCYEKLGD--KFEAAKAYEEAANCYKK-GDPDEAIECYEKA----------------IEIY 104 (282)
T ss_dssp HHHHTT-CHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHH----------------HHHH
T ss_pred HHHHHhccchhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHh-hCHHHHHHHHHHH----------------HHHH
Confidence 344678888898888888654222211 11223344444444433 3666666666554 3456
Q ss_pred HcCCChHHHHHHhhhCCCCcchHHHHHHHHHhc-CChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 003082 202 VNKPDVNLAIRYACIVPRADILFCNFVREFGKK-RDLVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKS 275 (850)
Q Consensus 202 ~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A 275 (850)
...|++..|-+ .+..+...|... |++++|++.|++..+. |... -..++..+...+.+.|++++|
T Consensus 105 ~~~G~~~~aA~----------~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A 174 (282)
T PF14938_consen 105 REAGRFSQAAK----------CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEA 174 (282)
T ss_dssp HHCT-HHHHHH----------HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HhcCcHHHHHH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHH
Confidence 66777776543 455688889998 9999999999987653 2111 134577888889999999999
Q ss_pred HHHHHHHHhCCCC-----cCH--HHHHHHHH-hhcCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHHHc--CChH
Q 003082 276 RAIYEDLRSQNVT-----LNI--YVFNSLMN-VNAHDLKFTLEVYKNMQKL--GVMAD--MASYNILLKACCLA--GNTV 341 (850)
Q Consensus 276 ~~~~~~m~~~g~~-----pd~--~t~~~ll~-~~~~~~~~a~~l~~~m~~~--g~~pd--~~t~~~Ll~~~~~~--g~~~ 341 (850)
.++|+++...-.. .+. ..+..+|. .+.+|...|.+.|++.... ++..+ ......||.+|-.. ..+.
T Consensus 175 ~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~ 254 (282)
T PF14938_consen 175 IEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFT 254 (282)
T ss_dssp HHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHH
T ss_pred HHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHH
Confidence 9999998764322 222 22233333 3557888888888887653 22222 33455566665332 2344
Q ss_pred HHHHHHHHH
Q 003082 342 LAQEIYGEV 350 (850)
Q Consensus 342 ~A~~i~~~m 350 (850)
.|..-|+.+
T Consensus 255 ~av~~~d~~ 263 (282)
T PF14938_consen 255 EAVAEYDSI 263 (282)
T ss_dssp HHCHHHTTS
T ss_pred HHHHHHccc
Confidence 555555544
No 156
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.36 E-value=0.0067 Score=64.88 Aligned_cols=120 Identities=12% Similarity=0.119 Sum_probs=63.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCCh
Q 003082 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDL 305 (850)
Q Consensus 226 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~ 305 (850)
.|+..+...++++.|+.+|+++.+.. |+. ...++..+...++-.+|.+++++..+.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-------------------- 229 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE-------------------- 229 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh--------------------
Confidence 34555555556666666666655532 332 223444454455555555554443321
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHh-HHHHHHHHHHhcCCHHHHHH
Q 003082 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF-TYSTIVKVFADAKWWQMALK 384 (850)
Q Consensus 306 ~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~-ty~~li~~~~~~g~~~~A~~ 384 (850)
.+-|......-...|.+.++.+.|..+.+++.. ..|+.+ +|..|..+|...|+++.|+.
T Consensus 230 --------------~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~------lsP~~f~~W~~La~~Yi~~~d~e~ALl 289 (395)
T PF09295_consen 230 --------------NPQDSELLNLQAEFLLSKKKYELALEIAKKAVE------LSPSEFETWYQLAECYIQLGDFENALL 289 (395)
T ss_pred --------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------hCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 122444444445556666666666666666655 334433 56666666666666666665
Q ss_pred HHHHH
Q 003082 385 VKEDM 389 (850)
Q Consensus 385 l~~~m 389 (850)
.++.+
T Consensus 290 aLNs~ 294 (395)
T PF09295_consen 290 ALNSC 294 (395)
T ss_pred HHhcC
Confidence 55554
No 157
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.31 E-value=0.03 Score=56.42 Aligned_cols=188 Identities=7% Similarity=-0.062 Sum_probs=115.9
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
....-..+..+...|+|++|+..|+.+....+.... . ......+..++.+.+++++|+..|++.+ ...|++..
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~--a---~~a~l~la~ayy~~~~y~~A~~~~e~fi--~~~P~~~~ 104 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPY--S---QQVQLDLIYAYYKNADLPLAQAAIDRFI--RLNPTHPN 104 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH--H---HHHHHHHHHHHHhcCCHHHHHHHHHHHH--HhCcCCCc
Confidence 333335677778899999999999999998443321 1 1112234446679999999999999999 45776532
Q ss_pred chhhhHHHHHHHHhhh------------------hcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHH
Q 003082 151 DGSGFKLLKNECQRLL------------------DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIR 212 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~------------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 212 (850)
... ++...+.... ++....+|+..|+.++..- |++...... +.....-+-..|.
T Consensus 105 ~~~---a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y--P~S~ya~~A--~~rl~~l~~~la~- 176 (243)
T PRK10866 105 IDY---VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY--PNSQYTTDA--TKRLVFLKDRLAK- 176 (243)
T ss_pred hHH---HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC--cCChhHHHH--HHHHHHHHHHHHH-
Confidence 222 2222221110 1122456777788877654 554322211 1100000000110
Q ss_pred HhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003082 213 YACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHL--SSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (850)
Q Consensus 213 ~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (850)
--..++..|.+.|.+..|+.-|+.+++.= .+........++.+|...|..++|......+.
T Consensus 177 ----------~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 ----------YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ----------HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 11246788999999999999999998752 22345567788899999999999988877654
No 158
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.18 E-value=0.0062 Score=57.84 Aligned_cols=90 Identities=16% Similarity=0.202 Sum_probs=77.8
Q ss_pred CCCcCHHHHHHHHHHHhc-------cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC----------------CHHH
Q 003082 510 SFKPTTTTYNILMKACCT-------DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSG----------------NVEG 566 (850)
Q Consensus 510 ~~~p~~~t~~~li~~~~~-------~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g----------------~~~~ 566 (850)
+-..|-.+|..+|+.|.+ +.+-....+..|.+-|+.-|..+|+.||+.+=|.. +-+-
T Consensus 42 ~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c 121 (228)
T PF06239_consen 42 GQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQEC 121 (228)
T ss_pred hccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHH
Confidence 456788999999999973 46777888999999999999999999999987632 3566
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 003082 567 ALQILKIMREDGMSPDVVAYTTAIKVCVRSKRL 599 (850)
Q Consensus 567 A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~ 599 (850)
|++++++|...|+.||..|+..+++.|++.+..
T Consensus 122 ~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 122 AIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 999999999999999999999999999887763
No 159
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.17 E-value=0.0055 Score=54.09 Aligned_cols=100 Identities=12% Similarity=0.026 Sum_probs=60.9
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCC
Q 003082 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRD 236 (850)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~ 236 (850)
++...+..+.+.|++++|++.++.+.... |++.. ...++..++..+.+.|+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~---------------------------~~~~~~~l~~~~~~~~~ 54 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTY---------------------------APNAHYWLGEAYYAQGK 54 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccc---------------------------cHHHHHHHHHHHHhhcc
Confidence 34555666777889999998888887643 33211 01234456666666667
Q ss_pred hHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 237 LVSALRAYDASKKHLSSP--NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 237 ~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
+++|...|+.+....+.. ...++..+..++.+.|++++|...++++.+.
T Consensus 55 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 55 YADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 777777776666532221 2345556666666667777777777766655
No 160
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.16 E-value=0.011 Score=51.73 Aligned_cols=58 Identities=16% Similarity=0.140 Sum_probs=48.1
Q ss_pred HhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhC
Q 003082 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184 (850)
Q Consensus 122 ~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~ 184 (850)
.+-..|+.++|+.+|+++++.|+.... ...+++.+...+...|++++|+.+++.....
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~-----~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGAD-----RRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344789999999999999987765532 2568888899999999999999999988764
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.14 E-value=0.0035 Score=67.30 Aligned_cols=91 Identities=11% Similarity=0.053 Sum_probs=57.0
Q ss_pred HHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHH
Q 003082 162 CQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSAL 241 (850)
Q Consensus 162 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~ 241 (850)
+..+...|++++|++.|++.+... |++. ..|..+..+|.+.|++++|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~------------------------------~a~~~~a~~~~~~g~~~eAl 56 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD--PNNA------------------------------ELYADRAQANIKLGNFTEAV 56 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCH------------------------------HHHHHHHHHHHHcCCHHHHH
Confidence 334456789999999998887654 5544 34455555566666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 242 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
..++++++... .+...|..+..+|...|++++|+..|+...+.
T Consensus 57 ~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 57 ADANKAIELDP-SLAKAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 66666665421 24455666666666666666666666666654
No 162
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.14 E-value=0.47 Score=50.13 Aligned_cols=456 Identities=13% Similarity=0.071 Sum_probs=243.6
Q ss_pred HHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhH-HHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHH
Q 003082 79 SKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLS-LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKL 157 (850)
Q Consensus 79 ~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~ 157 (850)
-.+-+++++.+|..+|.++.+.-.+. .+.+. -...++++.+|. ..+.+.-...+....+ ..|.. .+-.++..
T Consensus 14 f~Lqkq~~~~esEkifskI~~e~~~~---~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~--~~~~s-~~l~LF~~ 86 (549)
T PF07079_consen 14 FILQKQKKFQESEKIFSKIYDEKESS---PFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQ--QFGKS-AYLPLFKA 86 (549)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcc---hHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHH--hcCCc-hHHHHHHH
Confidence 34677899999999999998763211 12222 223445555554 3455554444444442 23322 22233332
Q ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchH-HHHHHHHHhcCC
Q 003082 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILF-CNFVREFGKKRD 236 (850)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~-~~li~~~~~~g~ 236 (850)
+ . .-+++.+.+|++.+......-.....+..-.++-.. ++ +..+ +..+..+...|+
T Consensus 87 L----~-~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l----------------~~--df~l~~i~a~sLIe~g~ 143 (549)
T PF07079_consen 87 L----V-AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQL----------------FS--DFFLDEIEAHSLIETGR 143 (549)
T ss_pred H----H-HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHH----------------hh--HHHHHHHHHHHHHhcCC
Confidence 2 2 336799999999988765441111111111111100 10 1222 235777888999
Q ss_pred hHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcC--------C-------HHHHHHHHHHHHhC------CCCcCH
Q 003082 237 LVSALRAYDASKKHLSS----PNMYICRTIIDVCGICG--------D-------YMKSRAIYEDLRSQ------NVTLNI 291 (850)
Q Consensus 237 ~~~A~~~~~~m~~~g~~----p~~~~~~~li~~~~~~g--------~-------~~~A~~~~~~m~~~------g~~pd~ 291 (850)
+.+++.++++|...-.+ =++.+||.++-.+++.= . ++.+.-...+|... .+.|..
T Consensus 144 f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~pee 223 (549)
T PF07079_consen 144 FSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEE 223 (549)
T ss_pred cchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHH
Confidence 99999998888765333 47778888666555431 1 12222222222211 234555
Q ss_pred HHHHHHHHhhc----CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHH
Q 003082 292 YVFNSLMNVNA----HDLKFTLEVYKNMQKLGVMADMA-SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366 (850)
Q Consensus 292 ~t~~~ll~~~~----~~~~~a~~l~~~m~~~g~~pd~~-t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty 366 (850)
..+..++.-.. ....--.++++.-.+.-+.|+-. +...|+..+.. +.+++..+-+.+....-+...+-=..++
T Consensus 224 eL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F 301 (549)
T PF07079_consen 224 ELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRF 301 (549)
T ss_pred HHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 55555554321 12333344444444444556532 34445555544 4455555544443311000011124578
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHH
Q 003082 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW-------SSLINACAN----AGLVEQAMHLFEEMLQAGCEPNSQC 435 (850)
Q Consensus 367 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty-------~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~ 435 (850)
..++....+.++...|.+.+.-+... .|+...- ..+-+..|. .-+...=+.++++....++... ..
T Consensus 302 ~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq-QL 378 (549)
T PF07079_consen 302 GNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ-QL 378 (549)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH-HH
Confidence 88888888999999999988887654 3333321 112222221 1123344555665554432211 11
Q ss_pred HHHHH---HHHHHhCC-HHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCC
Q 003082 436 CNILL---QACVEACQ-FDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSF 511 (850)
Q Consensus 436 ~~~ll---~~~~~~g~-~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (850)
..-|+ .-+.+.|. -++|.++++.+..-.
T Consensus 379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~ft------------------------------------------------ 410 (549)
T PF07079_consen 379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQFT------------------------------------------------ 410 (549)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc------------------------------------------------
Confidence 12222 23445555 777888887765421
Q ss_pred CcCHHHHHHHH----HHHhc-----cHHHHHHHHHHHHHcCCCCC----HHHHHHHHHH--HHcCCCHHHHHHHHHHHHH
Q 003082 512 KPTTTTYNILM----KACCT-----DYYRVKALMNEMRTVGLSPN----HISWTILIDA--CGGSGNVEGALQILKIMRE 576 (850)
Q Consensus 512 ~p~~~t~~~li----~~~~~-----~~~~a~~l~~~m~~~g~~p~----~~ty~~li~~--~~~~g~~~~A~~l~~~m~~ 576 (850)
.-|...-|.+. .+|.. ...+-..+-+.+.+.|+.|- ...-|.|-++ +...|++.++.-.-.-+.+
T Consensus 411 ~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~ 490 (549)
T PF07079_consen 411 NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK 490 (549)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 12222222222 22221 23455556666677888773 3344555444 4567888888766655555
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003082 577 DGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITL 624 (850)
Q Consensus 577 ~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 624 (850)
+.|++.+|.-+.-++....++++|..++..+ +||..++++=
T Consensus 491 --iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~dsk 531 (549)
T PF07079_consen 491 --IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDSK 531 (549)
T ss_pred --hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHHH
Confidence 6899999999999999999999999998876 6777777653
No 163
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.13 E-value=0.021 Score=52.57 Aligned_cols=126 Identities=14% Similarity=0.168 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--H
Q 003082 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT--I 399 (850)
Q Consensus 325 ~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d---~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~ 399 (850)
..|..++..+ ..++...+...++.+... .+.+ ....-.+...+...|++++|...|+........|+. .
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~ 86 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPL 86 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHH
Confidence 3455555555 478888888888888762 1122 223334556788899999999999999987643332 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003082 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (850)
Q Consensus 400 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~ 458 (850)
..-.|...+...|++++|+..++...... .....+....+.|.+.|++++|...|+.
T Consensus 87 a~l~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 87 ARLRLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34456778889999999999997754332 3344566778899999999999999875
No 164
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.13 E-value=0.0036 Score=56.72 Aligned_cols=97 Identities=8% Similarity=0.015 Sum_probs=81.6
Q ss_pred CCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003082 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263 (850)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 263 (850)
++.....+.++..+...|++++|.++|+.+ |.+...|..|.-.+-..|++.+|+..|.......+ .|...+-.+.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag 110 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHH
Confidence 444556777888888999999999998774 77778889999999999999999999999888653 5777888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 003082 264 DVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
.++...|+.+.|.+-|+.....
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8999999999999999887653
No 165
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.02 E-value=0.0056 Score=60.85 Aligned_cols=93 Identities=13% Similarity=0.047 Sum_probs=58.2
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHH
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVRE 230 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~p~~~~~~~~li~~ 230 (850)
-+.+-.-.-.+++.++|.+|+..|.+.++.. |++++.|..-+.+|.+.|.++.|++-.+. -|+...+|..|..+
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A 158 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLA 158 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 3344444555677888888888888887755 77766666666666666666666554333 24444556666666
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 003082 231 FGKKRDLVSALRAYDASKK 249 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~ 249 (850)
|...|++++|++.|+..++
T Consensus 159 ~~~~gk~~~A~~aykKaLe 177 (304)
T KOG0553|consen 159 YLALGKYEEAIEAYKKALE 177 (304)
T ss_pred HHccCcHHHHHHHHHhhhc
Confidence 6666666666666665555
No 166
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=97.01 E-value=0.0011 Score=54.24 Aligned_cols=55 Identities=29% Similarity=0.366 Sum_probs=42.4
Q ss_pred HHhhccchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEecCCcccccCcccchHHHHHHHHHhhh
Q 003082 714 IDLRGLTKVEARIIVLAVLRMMKENYSLGVPVKDDLMIVLGPNKVNKIQAKHDLEVKDAITKLLQD 779 (850)
Q Consensus 714 ~~l~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~i~~g~gk~s~~~g~~~~~v~~~v~~~l~~ 779 (850)
+|||||+..+|...+..++........ ..+.||||.|+||. .| .||++|.+.|.+
T Consensus 1 iDLHG~~~~eA~~~l~~~l~~~~~~~~------~~~~II~G~G~hS~-~g----~Lk~~V~~~L~~ 55 (83)
T PF01713_consen 1 IDLHGLTVEEALRALEEFLDEARQRGI------RELRIITGKGNHSK-GG----VLKRAVRRWLEE 55 (83)
T ss_dssp EE-TTS-HHHHHHHHHHHHHHHHHTTH------SEEEEE--STCTCC-TS----HHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHcCC------CEEEEEeccCCCCC-CC----cHHHHHHHHHHh
Confidence 489999999999999988888776533 46889999999997 34 399999999966
No 167
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.96 E-value=0.0044 Score=61.54 Aligned_cols=103 Identities=14% Similarity=-0.027 Sum_probs=79.8
Q ss_pred hhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHH
Q 003082 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (850)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (850)
+.+.++|.+|+..|.+++ .+.|...+ .|-+.+..|.+.|.++.|++-.+..+... |....+|..++.+|.
T Consensus 91 ~m~~~~Y~eAv~kY~~AI--~l~P~nAV------yycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI--ELDPTNAV------YYCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHhhhHHHHHHHHHHHH--hcCCCcch------HHHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHHHHHHHHHH
Confidence 347899999999999999 66887632 34555667788899999999999888765 777788999999999
Q ss_pred cCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcC
Q 003082 203 NKPDVNLAIRYACIV----PRADILFCNFVREFGKKR 235 (850)
Q Consensus 203 ~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g 235 (850)
..|++.+|++.|++. |++.....+|-.+=-+.+
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLN 197 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence 999999999998764 666655555533333333
No 168
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.95 E-value=0.7 Score=48.91 Aligned_cols=89 Identities=12% Similarity=0.125 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHCCCCCCH----HHHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003082 564 VEGALQILKIMREDGMSPDV----VAYTTAIKV--CVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEV 637 (850)
Q Consensus 564 ~~~A~~l~~~m~~~g~~pd~----~ty~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~~~g~~~~a 637 (850)
+..-..+-+-..+.|+.|-. ..-|.|-+| +..+|++.++.-.-..+.+ +.|+..+|.-+--++....++++
T Consensus 437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~e- 513 (549)
T PF07079_consen 437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQE- 513 (549)
T ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHH-
Confidence 33333443444455666532 233444443 3446777776665555543 56777777766555555555554
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHH
Q 003082 638 QQCLAVYQDMWKAGYKANDTYLKEL 662 (850)
Q Consensus 638 ~~a~~l~~~M~~~g~~p~~~~~~~l 662 (850)
|+++|..+ +||..++++=
T Consensus 514 --A~~~l~~L-----P~n~~~~dsk 531 (549)
T PF07079_consen 514 --AWEYLQKL-----PPNERMRDSK 531 (549)
T ss_pred --HHHHHHhC-----CCchhhHHHH
Confidence 55555443 5666555443
No 169
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.92 E-value=0.0076 Score=64.72 Aligned_cols=88 Identities=11% Similarity=0.046 Sum_probs=68.9
Q ss_pred hhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHH
Q 003082 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (850)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (850)
+...|++++|++.|++++ .+.|+. ..++...+..+...|++++|+..+++.+... |+..
T Consensus 12 a~~~~~~~~Ai~~~~~Al--~~~P~~------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~----------- 70 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAI--DLDPNN------AELYADRAQANIKLGNFTEAVADANKAIELD--PSLA----------- 70 (356)
T ss_pred HHHcCCHHHHHHHHHHHH--HhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCH-----------
Confidence 447899999999999999 557765 5567777888889999999999999988754 4433
Q ss_pred cCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003082 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH 250 (850)
Q Consensus 203 ~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 250 (850)
.+|..++.+|...|++++|+..|++.++.
T Consensus 71 -------------------~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 71 -------------------KAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred -------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 45666677777778888888888877764
No 170
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.88 E-value=0.018 Score=47.66 Aligned_cols=89 Identities=18% Similarity=0.203 Sum_probs=43.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Q 003082 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQ 448 (850)
Q Consensus 369 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 448 (850)
+...+...|++++|..++++..+.... +...+..+...+...|++++|.+.|+...+.. +.+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 334444455555555555555443211 22444445555555555555555555554432 2222344455555555555
Q ss_pred HHHHHHHHHHH
Q 003082 449 FDRAFRLFRSW 459 (850)
Q Consensus 449 ~~~A~~l~~~m 459 (850)
++.|...+...
T Consensus 84 ~~~a~~~~~~~ 94 (100)
T cd00189 84 YEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 171
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.88 E-value=0.019 Score=59.37 Aligned_cols=129 Identities=12% Similarity=0.104 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhh-cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003082 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQN-VTLNIYVFNSLMNVN-AHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334 (850)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~~~-~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~ 334 (850)
.+|-.+++...+.+..+.|..+|.+..+.+ +..+++...++|..+ .++.+.|..+|+...+. +..+...|...++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 456677777777777777777777777543 345566666666554 34555577777776654 345667777777777
Q ss_pred HHcCChHHHHHHHHHHHHhhhcCCcccC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003082 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYSTIVKVFADAKWWQMALKVKEDMLS 391 (850)
Q Consensus 335 ~~~g~~~~A~~i~~~m~~~~~~g~~~~d---~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 391 (850)
.+.|+.+.|..+|+..... +.++ ...|...+..=.+.|+++.+.++.+.+.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-----l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-----LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-----SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-----cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888888776541 2222 23666666666666666666666666655
No 172
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.85 E-value=0.042 Score=48.33 Aligned_cols=101 Identities=11% Similarity=-0.048 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHH
Q 003082 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT--PNTITWSS 403 (850)
Q Consensus 326 t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~ty~~ 403 (850)
++..+...+.+.|++++|.+.|..+.+.... .......+..+...+.+.|++++|...|+.+...... .....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPK--STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4556777788889999999999888763100 0111345666788888899999999999988764322 12456777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC
Q 003082 404 LINACANAGLVEQAMHLFEEMLQAG 428 (850)
Q Consensus 404 li~~~~~~g~~~~A~~l~~~m~~~g 428 (850)
+..++.+.|+.++|...++++.+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC
Confidence 7788888899999999999888763
No 173
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.85 E-value=0.018 Score=47.67 Aligned_cols=95 Identities=20% Similarity=0.145 Sum_probs=73.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003082 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406 (850)
Q Consensus 327 ~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~ 406 (850)
+..+...+...|++++|...|+.+.+. .+.+...+..+...+...+++++|.+.++........ +..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 76 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL-----DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGL 76 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHH
Confidence 455677788889999999999888762 1233466777888888889999999999988876533 4567888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHc
Q 003082 407 ACANAGLVEQAMHLFEEMLQA 427 (850)
Q Consensus 407 ~~~~~g~~~~A~~l~~~m~~~ 427 (850)
.+...|+++.|...+....+.
T Consensus 77 ~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 77 AYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHhHHHHHHHHHHHHcc
Confidence 889999999999998887653
No 174
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.68 E-value=0.0042 Score=50.96 Aligned_cols=80 Identities=20% Similarity=0.321 Sum_probs=36.2
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 003082 376 AKWWQMALKVKEDMLSAGVT-PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454 (850)
Q Consensus 376 ~g~~~~A~~l~~~m~~~g~~-p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~ 454 (850)
.|+++.|+.+++++.+.... ++...+-.+..+|.+.|++++|..+++. .+.+ ..+....-.+..+|.+.|++++|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 34555555555555544321 1233333355555555666666555555 2111 1112222233455555566666655
Q ss_pred HHH
Q 003082 455 LFR 457 (850)
Q Consensus 455 l~~ 457 (850)
.++
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 175
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.65 E-value=0.031 Score=57.83 Aligned_cols=130 Identities=12% Similarity=0.131 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003082 529 YYRVKALMNEMRTVG-LSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFE 607 (850)
Q Consensus 529 ~~~a~~l~~~m~~~g-~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~ 607 (850)
.+.|..+|.+..+.+ +..++....+++.. ...++.+.|.++|+...+. +..+...|...++-+.+.|+.+.|..+|+
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfe 94 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFE 94 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 455666666665432 22333333444432 2235556677777777654 34466667777777777777777777777
Q ss_pred HHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003082 608 EMKHYQIQPN---LVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEW 666 (850)
Q Consensus 608 ~m~~~g~~p~---~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~~g~~p~~~~~~~li~~~ 666 (850)
+.... +.++ ...|...++-=.+.|+++. +..+.+++.+. -|+...+..+++-|
T Consensus 95 r~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~---v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 95 RAISS-LPKEKQSKKIWKKFIEFESKYGDLES---VRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHH---HHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHHh-cCchhHHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 77653 2222 2477777777777787666 44455566553 33444444444433
No 176
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.63 E-value=0.081 Score=51.83 Aligned_cols=180 Identities=11% Similarity=-0.030 Sum_probs=102.4
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
....-..+..+...|+|++|+..|+.+....+. +... ....-.++.++.+.|++++|+..|++.++. .|+...
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~--s~~a---~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~ 77 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPN--SPYA---PQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPK 77 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT--STTH---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--ChHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcc
Confidence 444456778889999999999999999988432 2111 222223445677999999999999999854 665432
Q ss_pred chhhhHHHHHHHHh-----------hhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCC
Q 003082 151 DGSGFKLLKNECQR-----------LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR 219 (850)
Q Consensus 151 ~~~~~~~l~~~~~~-----------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~ 219 (850)
.. .++...+.. ..+++...+|+..|+.++..- |++..... |......+..
T Consensus 78 ~~---~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y--P~S~y~~~--------------A~~~l~~l~~ 138 (203)
T PF13525_consen 78 AD---YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY--PNSEYAEE--------------AKKRLAELRN 138 (203)
T ss_dssp HH---HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH---TTSTTHHH--------------HHHHHHHHHH
T ss_pred hh---hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC--cCchHHHH--------------HHHHHHHHHH
Confidence 21 222222211 123344567778888777654 55433221 1111110000
Q ss_pred C-cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 003082 220 A-DILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGICGDYMKSR 276 (850)
Q Consensus 220 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~ 276 (850)
. ..--..++..|.+.|.+..|..-|+.+++.-+.. .....-.++.+|.+.|..+.+.
T Consensus 139 ~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 139 RLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 0 0111236788999999999999999998862211 1235667788888888877443
No 177
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.027 Score=56.44 Aligned_cols=113 Identities=9% Similarity=0.079 Sum_probs=83.0
Q ss_pred hhhccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHH
Q 003082 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (850)
Q Consensus 59 ~l~~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~ 138 (850)
+-..++.+|+. ..-|--|+..|...|++++|...|.+..+. .|+.... ...++..+..-..+..-.++..+|++
T Consensus 145 Le~~L~~nP~d-~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~---~~g~aeaL~~~a~~~~ta~a~~ll~~ 218 (287)
T COG4235 145 LETHLQQNPGD-AEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEI---LLGLAEALYYQAGQQMTAKARALLRQ 218 (287)
T ss_pred HHHHHHhCCCC-chhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHH---HHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 33467888888 888999999999999999999999999988 3333333 22233333222233445588999999
Q ss_pred HHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCC
Q 003082 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (850)
Q Consensus 139 ~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (850)
++ ...|++ ...+..++..+..+|++.+|+..++.|++..
T Consensus 219 al--~~D~~~------iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 219 AL--ALDPAN------IRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HH--hcCCcc------HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 99 667876 4455556677788999999999999998765
No 178
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.62 E-value=0.033 Score=53.02 Aligned_cols=99 Identities=10% Similarity=0.037 Sum_probs=55.9
Q ss_pred HHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCC-CcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhc
Q 003082 156 KLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVK-ELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKK 234 (850)
Q Consensus 156 ~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~ 234 (850)
..+...+..+...|++++|+..+++.+.....+. .. ..+..++..|.+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------------------~~~~~la~~~~~~ 85 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRS------------------------------YILYNMGIIYASN 85 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHH------------------------------HHHHHHHHHHHHc
Confidence 3455556667778999999999988876542211 11 2344455555555
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHhC
Q 003082 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD--------------YMKSRAIYEDLRSQ 285 (850)
Q Consensus 235 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--------------~~~A~~~~~~m~~~ 285 (850)
|++++|+..|++..+... .+...+..+..+|...|+ +++|.++++.....
T Consensus 86 g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 86 GEHDKALEYYHQALELNP-KQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL 149 (172)
T ss_pred CCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence 555555555555554321 133344444445554444 56677777776654
No 179
>PRK15331 chaperone protein SicA; Provisional
Probab=96.61 E-value=0.024 Score=51.80 Aligned_cols=93 Identities=10% Similarity=0.055 Sum_probs=62.2
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHH
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVRE 230 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~ 230 (850)
++.+...+..+-.+|++++|..+|.-+.... +.+...+..++..+-..+++++|+..|... +.++..+......
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC 114 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQC 114 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHH
Confidence 4555555555668899999999999887655 445555666666666677777777665442 4455555666666
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 003082 231 FGKKRDLVSALRAYDASKK 249 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~ 249 (850)
|...|+.+.|+..|+...+
T Consensus 115 ~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 115 QLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHhCCHHHHHHHHHHHHh
Confidence 7777777777776666655
No 180
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.60 E-value=0.6 Score=51.74 Aligned_cols=110 Identities=11% Similarity=0.034 Sum_probs=71.9
Q ss_pred hhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHh
Q 003082 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGK 233 (850)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~ 233 (850)
..++..+....+++...|++|.+.|..-.. ....+..+.+...+++-+...+.+|.+....-.+..++.+
T Consensus 795 ~e~A~r~ig~~fa~~~~We~A~~yY~~~~~----------~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~s 864 (1189)
T KOG2041|consen 795 KEDAFRNIGETFAEMMEWEEAAKYYSYCGD----------TENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTS 864 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------hHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHh
Confidence 344555556666666777777777764321 2234555555666666666777778888888888889999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003082 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (850)
Q Consensus 234 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 282 (850)
.|.-++|++.|-+.- . |. +-+..|....+|.+|.++-+..
T Consensus 865 vGMC~qAV~a~Lr~s---~-pk-----aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 865 VGMCDQAVEAYLRRS---L-PK-----AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred hchHHHHHHHHHhcc---C-cH-----HHHHHHHHHHHHHHHHHHHHhc
Confidence 998888888775432 1 32 2345566677777777776543
No 181
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.59 E-value=0.83 Score=47.24 Aligned_cols=176 Identities=10% Similarity=-0.007 Sum_probs=103.6
Q ss_pred hhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcC-cHHHHHHHHHHHHhC----CC-CCCCcccHHHH
Q 003082 124 IREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSG-EVEMFVGLMEVLEEF----RL-PVKELDEEFRI 197 (850)
Q Consensus 124 ~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g-~~~~A~~~~~~~~~~----~~-~~~~~~~~~~l 197 (850)
+++|+.+.|..+|.++.......++.....+.+.+.+.+..+.+.+ ++++|...+++..+. +. ...... ..
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~-~~-- 80 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPD-GS-- 80 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCc-HH--
Confidence 4889999999999999854312222234466677888888888888 999999888876543 10 000000 00
Q ss_pred HHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003082 198 VQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLV---SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274 (850)
Q Consensus 198 ~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 274 (850)
-++ ..++..|+.+|...+..+ +|..+.+.+.+... -...++-.-+.++.+.++.++
T Consensus 81 ------------elr--------~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~-~~~~~~~L~l~il~~~~~~~~ 139 (278)
T PF08631_consen 81 ------------ELR--------LSILRLLANAYLEWDTYESVEKALNALRLLESEYG-NKPEVFLLKLEILLKSFDEEE 139 (278)
T ss_pred ------------HHH--------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHhccCChhH
Confidence 000 034556777777777654 45556666644322 224445555666667888999
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHh----hcCChHHHHHHHHHHHHcCCCCCH
Q 003082 275 SRAIYEDLRSQNVTLNIYVFNSLMNV----NAHDLKFTLEVYKNMQKLGVMADM 324 (850)
Q Consensus 275 A~~~~~~m~~~g~~pd~~t~~~ll~~----~~~~~~~a~~l~~~m~~~g~~pd~ 324 (850)
+.+++.+|...-.. ....|..++.. .......+...++.+...-+.|..
T Consensus 140 ~~~~L~~mi~~~~~-~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 140 YEEILMRMIRSVDH-SESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHHhccc-ccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 99999998875221 22334444433 223555666666666554444443
No 182
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.58 E-value=0.0085 Score=48.29 Aligned_cols=70 Identities=14% Similarity=0.027 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHH
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~ 141 (850)
..+|..++..|...|++++|+..|+++++.. ...+..+......+.++...+...|++++|++.|+++.+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIE-EQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6788999999999999999999999999763 211212333355666777778899999999999999874
No 183
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.33 Score=50.61 Aligned_cols=215 Identities=13% Similarity=0.012 Sum_probs=111.6
Q ss_pred ccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHH----HHHHHH--hhhcCchhHHHHH
Q 003082 62 TVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMV----ASGIVK--SIREGRIDCVVGV 135 (850)
Q Consensus 62 ~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~----~~~~~~--~~~~g~~~~A~~~ 135 (850)
++...|++ ..+|..-+..|...|+|++|+--.++.++.. |.....-....-+ +.++.+ +.+....-.+...
T Consensus 75 Ai~~~pd~-a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k--d~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~ana 151 (486)
T KOG0550|consen 75 AIDMCPDN-ASYYSNRAATLMMLGRFEEALGDARQSVRLK--DGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANA 151 (486)
T ss_pred HHHhCccc-hhhhchhHHHHHHHHhHhhcccchhhheecC--CCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhh
Confidence 66778887 7778788888888899999998888777653 2211111101111 111110 1111111112222
Q ss_pred HHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhh
Q 003082 136 LKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYAC 215 (850)
Q Consensus 136 l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 215 (850)
|.+.. .+-|.....++.+..-+.-...+...|++++|.+.--.+++.. +.+......-+.++--.++.+.|...|.
T Consensus 152 l~~~~--~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~~n~~al~vrg~~~yy~~~~~ka~~hf~ 227 (486)
T KOG0550|consen 152 LPTLE--KLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD--ATNAEALYVRGLCLYYNDNADKAINHFQ 227 (486)
T ss_pred hhhhh--cccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc--cchhHHHHhcccccccccchHHHHHHHh
Confidence 22222 2333333234445555545555677899999998877776654 4444444444445555677778887776
Q ss_pred hC----CCCc------------chHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHH
Q 003082 216 IV----PRAD------------ILFCNFVREFGKKRDLVSALRAYDASKKHLS---SPNMYICRTIIDVCGICGDYMKSR 276 (850)
Q Consensus 216 ~~----p~~~------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~~~~~~~li~~~~~~g~~~~A~ 276 (850)
+. |.-. ..+..-.+-..+.|++..|.+.|.+.+...+ .++...|-....+..+.|+..+|+
T Consensus 228 qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eai 307 (486)
T KOG0550|consen 228 QALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAI 307 (486)
T ss_pred hhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhh
Confidence 64 1111 1122223444555666666666665554322 233444444445555555555555
Q ss_pred HHHHHHH
Q 003082 277 AIYEDLR 283 (850)
Q Consensus 277 ~~~~~m~ 283 (850)
.--+...
T Consensus 308 sdc~~Al 314 (486)
T KOG0550|consen 308 SDCNEAL 314 (486)
T ss_pred hhhhhhh
Confidence 5554443
No 184
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.24 Score=51.62 Aligned_cols=269 Identities=14% Similarity=0.085 Sum_probs=148.6
Q ss_pred hcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcC
Q 003082 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK 204 (850)
Q Consensus 125 ~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (850)
++.+|.+|+..|..++ .+.|+. ...+-+.+..+.-.|++++|.--.+.-+.. ++..........+.+...
T Consensus 61 k~k~Y~nal~~yt~Ai--~~~pd~------a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 61 KQKTYGNALKNYTFAI--DMCPDN------ASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLAL 130 (486)
T ss_pred HHhhHHHHHHHHHHHH--HhCccc------hhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhh
Confidence 6788999999999999 557776 233444445555678888887666554332 233333444556666666
Q ss_pred CChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHH-HHHHhcCCHHHHHHHHHHH
Q 003082 205 PDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLS-SPNMYICRTII-DVCGICGDYMKSRAIYEDL 282 (850)
Q Consensus 205 ~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m 282 (850)
++.-+|.+.++.. ..+ ....|+..++....... +|.-..|-.+- .++.-.|++++|.+.--..
T Consensus 131 ~~~i~A~~~~~~~----~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~i 195 (486)
T KOG0550|consen 131 SDLIEAEEKLKSK----QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDI 195 (486)
T ss_pred HHHHHHHHHhhhh----hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHH
Confidence 6666666555410 101 11122222222222211 12223333222 2344456666666655554
Q ss_pred HhCCCCcCHHHHHHHHHh----hcCChHHHHHHHHHHHHcCCCCCHHHHHH---H----------HHHHHHcCChHHHHH
Q 003082 283 RSQNVTLNIYVFNSLMNV----NAHDLKFTLEVYKNMQKLGVMADMASYNI---L----------LKACCLAGNTVLAQE 345 (850)
Q Consensus 283 ~~~g~~pd~~t~~~ll~~----~~~~~~~a~~l~~~m~~~g~~pd~~t~~~---L----------l~~~~~~g~~~~A~~ 345 (850)
++.. ....+...+++ +..+.+.+..-|++-+..+ |+...--. . -+-..+.|.+..|.+
T Consensus 196 lkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E 270 (486)
T KOG0550|consen 196 LKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYE 270 (486)
T ss_pred Hhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHH
Confidence 4321 11122222222 3345556666666555443 33221111 1 122357789999999
Q ss_pred HHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHH
Q 003082 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA--CANAGLVEQAMHLFEE 423 (850)
Q Consensus 346 i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~--~~~~g~~~~A~~l~~~ 423 (850)
.|.+........ ..++...|-.......+.|+.++|+.--+.....+ +......+.++ +.-.+++++|.+-|+.
T Consensus 271 ~Yteal~idP~n-~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD---~syikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 271 CYTEALNIDPSN-KKTNAKLYGNRALVNIRLGRLREAISDCNEALKID---SSYIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred HHHHhhcCCccc-cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888754333 56667777777777888899999988888776532 23333444443 3345778888888888
Q ss_pred HHHc
Q 003082 424 MLQA 427 (850)
Q Consensus 424 m~~~ 427 (850)
..+.
T Consensus 347 a~q~ 350 (486)
T KOG0550|consen 347 AMQL 350 (486)
T ss_pred HHhh
Confidence 7765
No 185
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=0.7 Score=45.24 Aligned_cols=142 Identities=13% Similarity=0.121 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh--hcCChHHHHHHHHHHHHcCCCCCHHHHHHHH---
Q 003082 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILL--- 331 (850)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~--~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll--- 331 (850)
.+.+.++..+.-.|.+.-...++.+..+...+.+......|.+. ..||.+.|...|++..+..-..|..+.+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 35566667666677788888888888876656666666666654 4578888888888776654445555555444
Q ss_pred --HHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003082 332 --KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405 (850)
Q Consensus 332 --~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li 405 (850)
..|.-++++..|...|+++..+. .-|...-|.=.-++.-.|+..+|++.++.|+.. .|...+-++++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-----~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-----PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-----CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 34445677888888888777632 224444444444455678889999999999886 44444444443
No 186
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.51 E-value=0.091 Score=54.30 Aligned_cols=288 Identities=15% Similarity=0.043 Sum_probs=138.6
Q ss_pred hhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHH----hCCCCCCCcccHHHHH
Q 003082 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLE----EFRLPVKELDEEFRIV 198 (850)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~~l~ 198 (850)
+++.|+....+.+|+.+++.|..- ...+..+|.++...|.-.++|++|+++...=+ ..+-+.-...+.-+++
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeD----l~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTED----LSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchH----HHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 568999999999999999766432 11222334444445556689999987643211 1121222233344566
Q ss_pred HHHHcCCChHHHHHHh-hhC---------CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHH
Q 003082 199 QLCVNKPDVNLAIRYA-CIV---------PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMY--ICRTIIDVC 266 (850)
Q Consensus 199 ~~~~~~~~~~~A~~~~-~~~---------p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~ 266 (850)
..+--.|.+++|+... +.+ .....++++|...|...|+.-.-..- .+.|-.+..+ .+..-+..
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~p----ee~g~f~~ev~~al~~Av~f- 177 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAP----EEKGAFNAEVTSALENAVKF- 177 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCCh----hhcccccHHHHHHHHHHHHH-
Confidence 6777778888887642 221 11236677888888777642110000 0001111110 01111111
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh--hcCChHHHHHHHHHH----HHcCCC-CCHHHHHHHHHHHHHcCC
Q 003082 267 GICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNM----QKLGVM-ADMASYNILLKACCLAGN 339 (850)
Q Consensus 267 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~--~~~~~~~a~~l~~~m----~~~g~~-pd~~t~~~Ll~~~~~~g~ 339 (850)
|.+-+++.+.+-.++- --..|-.|=+. +.|+++.|+...+.= .+.|-. .-...+..|-+++.-.|+
T Consensus 178 -----y~eNL~l~~~lgDr~a--qGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~ 250 (639)
T KOG1130|consen 178 -----YMENLELSEKLGDRLA--QGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN 250 (639)
T ss_pred -----HHHHHHHHHHhhhHHh--hcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc
Confidence 1111111111111100 00111111111 124555554433321 112211 123456777888888889
Q ss_pred hHHHHHHHHHHHHhhh-cCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHHcCC
Q 003082 340 TVLAQEIYGEVKHLEA-KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA-----GVTPNTITWSSLINACANAGL 413 (850)
Q Consensus 340 ~~~A~~i~~~m~~~~~-~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~~~ty~~li~~~~~~g~ 413 (850)
++.|.+.|+....+.. -|.-.....+.-+|-+.|.-..+++.|+..+..-+.- ...-....|-+|..+|...|.
T Consensus 251 fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~ 330 (639)
T KOG1130|consen 251 FELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGE 330 (639)
T ss_pred cHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh
Confidence 9988888875543321 1111223344555666666666666666665543211 011133455566666666666
Q ss_pred HHHHHHHHHHHHH
Q 003082 414 VEQAMHLFEEMLQ 426 (850)
Q Consensus 414 ~~~A~~l~~~m~~ 426 (850)
.++|+.+.+.-++
T Consensus 331 h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 331 HRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555443
No 187
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.42 E-value=0.016 Score=44.67 Aligned_cols=59 Identities=19% Similarity=0.152 Sum_probs=47.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 226 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
.++..+.+.|++++|+..|+++++.. +-+...+..+..++...|++++|...|+++.+.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35677888899999999999998864 236778888888999999999999999988754
No 188
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.40 E-value=0.54 Score=43.52 Aligned_cols=122 Identities=16% Similarity=0.139 Sum_probs=75.4
Q ss_pred HhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHH
Q 003082 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (850)
Q Consensus 122 ~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (850)
+....|++.+|...|+++.. |+-.++ -.+++..+......++..+|...++.+.+.. |..
T Consensus 98 al~elGr~~EA~~hy~qals-G~fA~d------~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~----------- 157 (251)
T COG4700 98 ALAELGRYHEAVPHYQQALS-GIFAHD------AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAF----------- 157 (251)
T ss_pred HHHHhhhhhhhHHHHHHHhc-cccCCC------HHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--Ccc-----------
Confidence 34467888888888888775 555544 3455666666666778888888887776544 211
Q ss_pred HcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003082 202 VNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281 (850)
Q Consensus 202 ~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 281 (850)
.++.....+...|...|++.+|...|+.....-+.|....|- ...+.++|+.+++..-+.+
T Consensus 158 -----------------r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y--~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 158 -----------------RSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYY--AEMLAKQGRLREANAQYVA 218 (251)
T ss_pred -----------------CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHH--HHHHHHhcchhHHHHHHHH
Confidence 112334456677777888888888888887754333333322 2334677776666554444
Q ss_pred H
Q 003082 282 L 282 (850)
Q Consensus 282 m 282 (850)
+
T Consensus 219 v 219 (251)
T COG4700 219 V 219 (251)
T ss_pred H
Confidence 4
No 189
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.38 E-value=0.9 Score=45.77 Aligned_cols=61 Identities=10% Similarity=-0.001 Sum_probs=37.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYI---CRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 224 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
+...+..+...|++++|++.|+.+...-+.. ... .-.++.+|.+.+++++|...|++..+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3344555566777777777777776643222 222 234456667777777777777777664
No 190
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.37 E-value=0.013 Score=45.73 Aligned_cols=64 Identities=16% Similarity=0.117 Sum_probs=45.6
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 003082 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (850)
Q Consensus 232 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 298 (850)
.+.|++++|++.|+.+....+ -+..++..+..+|.+.|++++|..+++.+... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 456888888888888877532 36677778888888888888888888887765 45544444443
No 191
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.36 E-value=0.011 Score=48.50 Aligned_cols=82 Identities=16% Similarity=0.195 Sum_probs=57.3
Q ss_pred cCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003082 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416 (850)
Q Consensus 337 ~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 416 (850)
.|+++.|..+|+.+.+.... .++...+-.+..+|.+.|++++|..+++. ...+.. +....-.+..+|.+.|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~---~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT---NPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG---THHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCCC---ChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHH
Confidence 57899999999999874210 11344555588889999999999999988 322222 33444455788899999999
Q ss_pred HHHHHHH
Q 003082 417 AMHLFEE 423 (850)
Q Consensus 417 A~~l~~~ 423 (850)
|++.|++
T Consensus 77 Ai~~l~~ 83 (84)
T PF12895_consen 77 AIKALEK 83 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9998875
No 192
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.33 E-value=0.21 Score=56.18 Aligned_cols=66 Identities=17% Similarity=0.130 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003082 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (850)
Q Consensus 322 pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 393 (850)
.+...|.++.-.....|++++|...|++... +.|+...|..+...+...|+.++|...+++....+
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~------L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAID------LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3445666665555556777777777777776 45677777777777777777777777777776653
No 193
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.33 E-value=0.089 Score=49.83 Aligned_cols=64 Identities=16% Similarity=0.124 Sum_probs=51.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
..+..++..+...|++++|+..|+........+ ...+|..+..+|...|++++|+..++...+.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556778888888999999999999987653332 2357888889999999999999999887754
No 194
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.32 E-value=0.066 Score=49.34 Aligned_cols=124 Identities=14% Similarity=0.050 Sum_probs=75.3
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCC---CCCCCc-ccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFR---LPVKEL-DEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~ 230 (850)
+..++..+......|+.+.++..+++++..- +-++.. ..|..-.+. .++.. ...+...++..
T Consensus 6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~------------~l~~~--~~~~~~~l~~~ 71 (146)
T PF03704_consen 6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERE------------RLREL--YLDALERLAEA 71 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHH------------HHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHH------------HHHHH--HHHHHHHHHHH
Confidence 4444444545556788888888888877542 111111 112211111 11100 00345567888
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCcCHHH
Q 003082 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS-----QNVTLNIYV 293 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~t 293 (850)
+...|++++|+.+...+....+ -|...|..+|.+|...|+..+|+++|+.+.+ .|+.|+..+
T Consensus 72 ~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 72 LLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 8899999999999999998642 4888999999999999999999999998763 355555443
No 195
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.31 E-value=0.16 Score=48.34 Aligned_cols=87 Identities=15% Similarity=0.082 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCccc-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003082 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401 (850)
Q Consensus 323 d~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~-d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty 401 (850)
....+..+...+...|++++|...|++..+.... .+ ....|..+...+.+.|++++|...+.+..+.... +...+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~ 109 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEED---PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSAL 109 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHH
Confidence 3456777888888999999999999988763211 11 1457888888899999999999999999876432 56667
Q ss_pred HHHHHHHHHcCC
Q 003082 402 SSLINACANAGL 413 (850)
Q Consensus 402 ~~li~~~~~~g~ 413 (850)
..+...+...|+
T Consensus 110 ~~lg~~~~~~g~ 121 (172)
T PRK02603 110 NNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHcCC
Confidence 777777777766
No 196
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.31 E-value=0.018 Score=44.36 Aligned_cols=56 Identities=13% Similarity=0.076 Sum_probs=40.1
Q ss_pred HhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCC
Q 003082 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (850)
Q Consensus 122 ~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (850)
.+...|++++|+..|++++ ...|+. .+++...+..+..+|++++|+..|+++++..
T Consensus 6 ~~~~~g~~~~A~~~~~~~l--~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQAL--KQDPDN------PEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHH--CCSTTH------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHH--HHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3457788888888888888 445654 5566666677778888888888888877654
No 197
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.30 E-value=0.13 Score=55.09 Aligned_cols=72 Identities=10% Similarity=0.024 Sum_probs=56.4
Q ss_pred cCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHc
Q 003082 65 RDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (850)
Q Consensus 65 ~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~ 142 (850)
.+|+. ...+..++.+|.+.|+|++|+..|++.++. +|+....- ..+.+....|...|+.++|++.|+++++.
T Consensus 70 ~dP~~-a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~---~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKT-AEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQ---AAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56666 889999999999999999999999999999 55543221 11233344566899999999999999964
No 198
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.28 E-value=0.35 Score=46.77 Aligned_cols=207 Identities=12% Similarity=0.093 Sum_probs=97.5
Q ss_pred hhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcC-ChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcc
Q 003082 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLE 148 (850)
Q Consensus 70 ~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~ 148 (850)
....|...+..+..+.+++.|...+.++.+-.. +.+-|. ....+++|..+.+++.+
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfh----------------AAKayEqaamLake~~k------- 86 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFH----------------AAKAYEQAAMLAKELSK------- 86 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHH----------------HHHHHHHHHHHHHHHHH-------
Confidence 478888899999999999999998888775431 211111 11233333333333331
Q ss_pred ccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhC--CCCCCCcccHH-HHHHHHHcCCChHHHHHHhhhCCCCcchHH
Q 003082 149 LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF--RLPVKELDEEF-RIVQLCVNKPDVNLAIRYACIVPRADILFC 225 (850)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~ 225 (850)
.+...+.+-.++..|.++|..+-|...+++..+. +..|+.....+ .-+......++.++|.+++ .
T Consensus 87 --lsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~----------g 154 (308)
T KOG1585|consen 87 --LSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELY----------G 154 (308)
T ss_pred --hHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHH----------H
Confidence 1122334444444455555555554444433211 11122211111 1111122222333333322 2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCcCHHHHHHH
Q 003082 226 NFVREFGKKRDLVSALRAYDASKK----HLSSPNM-YICRTIIDVCGICGDYMKSRAIYEDLRSQN---VTLNIYVFNSL 297 (850)
Q Consensus 226 ~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~pd~~t~~~l 297 (850)
.+...+.+..++.+|-..|..-.. ..-.++. ..|-..|-.|....++..|...|+.--+.+ -.-|..+...|
T Consensus 155 k~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenL 234 (308)
T KOG1585|consen 155 KCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENL 234 (308)
T ss_pred HhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHH
Confidence 334455555666655544432211 1111222 234455555566667777777777644332 12345666666
Q ss_pred HHhhc-CChHHHHHH
Q 003082 298 MNVNA-HDLKFTLEV 311 (850)
Q Consensus 298 l~~~~-~~~~~a~~l 311 (850)
|.+|- |+.+++..+
T Consensus 235 L~ayd~gD~E~~~kv 249 (308)
T KOG1585|consen 235 LTAYDEGDIEEIKKV 249 (308)
T ss_pred HHHhccCCHHHHHHH
Confidence 66653 465554443
No 199
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.24 E-value=0.057 Score=54.82 Aligned_cols=105 Identities=9% Similarity=-0.023 Sum_probs=75.1
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...|......+.+.|+|++|+..|+.+++..++ ......... .+...|...|++++|+..|+++.+ ..|+..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~--s~~a~~A~y---~LG~~y~~~g~~~~A~~~f~~vv~--~yP~s~- 214 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD--STYQPNANY---WLGQLNYNKGKKDDAAYYFASVVK--NYPKSP- 214 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC--CcchHHHHH---HHHHHHHHcCCHHHHHHHHHHHHH--HCCCCc-
Confidence 455655555557789999999999999998543 211111112 223345689999999999999994 356532
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCC
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (850)
...+++..++..+...|++++|...|+.+++..
T Consensus 215 --~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 215 --KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred --chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 335667777777888999999999999988765
No 200
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.21 E-value=0.2 Score=43.94 Aligned_cols=91 Identities=15% Similarity=0.046 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC------HHHHH
Q 003082 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPN--MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN------IYVFN 295 (850)
Q Consensus 224 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd------~~t~~ 295 (850)
.+.+..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..+|++.... .|+ ...|-
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFL 81 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHH
Confidence 44566667777888888888888777765443 234556667777778888888888777654 122 22233
Q ss_pred HHHHhhcCChHHHHHHHHHHH
Q 003082 296 SLMNVNAHDLKFTLEVYKNMQ 316 (850)
Q Consensus 296 ~ll~~~~~~~~~a~~l~~~m~ 316 (850)
.+.-...|+.++|++.+-...
T Consensus 82 Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 333334456666665554433
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.16 E-value=0.041 Score=55.86 Aligned_cols=82 Identities=17% Similarity=0.117 Sum_probs=44.2
Q ss_pred hhcCcHHHHHHHHHHHHhCCCCCCCc---ccHHHHHHHHHcCCChHHHHHHhhhC----CCC---cchHHHHHHHHHhcC
Q 003082 166 LDSGEVEMFVGLMEVLEEFRLPVKEL---DEEFRIVQLCVNKPDVNLAIRYACIV----PRA---DILFCNFVREFGKKR 235 (850)
Q Consensus 166 ~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~---~~~~~~li~~~~~~g 235 (850)
.+.|++++|+..|+.+++.. |++. ..++.++..|...|++++|+..|+.+ |.+ ..++..++..|...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 45688888888888887754 5542 24444555555555555555544332 222 233333444444555
Q ss_pred ChHHHHHHHHHHHh
Q 003082 236 DLVSALRAYDASKK 249 (850)
Q Consensus 236 ~~~~A~~~~~~m~~ 249 (850)
++++|..+|+.+++
T Consensus 232 ~~~~A~~~~~~vi~ 245 (263)
T PRK10803 232 DTAKAKAVYQQVIK 245 (263)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555554444
No 202
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.00 E-value=0.024 Score=45.60 Aligned_cols=70 Identities=13% Similarity=-0.008 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHh
Q 003082 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEE 183 (850)
Q Consensus 113 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~ 183 (850)
...+..+...+...|++++|+..|+++++. .......++.+..++.+++..+...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555566777999999999999999865 2111112444567788888888899999999999987654
No 203
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.99 E-value=2.6 Score=44.29 Aligned_cols=98 Identities=13% Similarity=0.145 Sum_probs=54.8
Q ss_pred HhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHH
Q 003082 163 QRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALR 242 (850)
Q Consensus 163 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~ 242 (850)
..-...|+..-|..+++. .|. ...-+..+...|+.+.|+.-.-...+.+.+|..|+..-.+... . +
T Consensus 8 ~~A~~~GR~~LA~~LL~~------Ep~----~~~qVplLL~m~e~e~AL~kAi~SgD~DLi~~vLl~L~~~l~~-s---~ 73 (319)
T PF04840_consen 8 RKAYEEGRPKLATKLLEL------EPR----ASKQVPLLLKMGEDELALNKAIESGDTDLIYLVLLHLKRKLSL-S---Q 73 (319)
T ss_pred HHHHHcChHHHHHHHHHc------CCC----hHHHHHHHhcCCchHHHHHHHHHcCCccHHHHHHHHHHHhCCH-H---H
Confidence 334467999888887762 132 2345667788888888876554445555677777665544431 1 2
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003082 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280 (850)
Q Consensus 243 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 280 (850)
+| .++.. .|.. ..+...|++..+.+.-..+|.
T Consensus 74 f~-~il~~--~p~a---~~l~~~~~r~~~~~~L~~~y~ 105 (319)
T PF04840_consen 74 FF-KILNQ--NPVA---SNLYKKYCREQDRELLKDFYY 105 (319)
T ss_pred HH-HHHHh--Ccch---HHHHHHHHHhccHHHHHHHHH
Confidence 33 33332 1331 234445666666666555554
No 204
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.97 E-value=0.15 Score=57.33 Aligned_cols=130 Identities=10% Similarity=-0.014 Sum_probs=77.4
Q ss_pred chhhhHHHHHHHHhhhhc---CcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcC--------CChHHHHHHhhh---
Q 003082 151 DGSGFKLLKNECQRLLDS---GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK--------PDVNLAIRYACI--- 216 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~--- 216 (850)
...+++.++..-. +.+. +...+|+.+|++.++.. |+....+..++.++... .+...+.+....
T Consensus 336 ~~~Ay~~~lrg~~-~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 336 QGAALTLFYQAHH-YLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 3455666665533 2233 34778889999888765 77665555544433221 112233333322
Q ss_pred ---CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 217 ---VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 217 ---~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
.+.+..++..+.-.+...|++++|...|++.+... |+...|..+...+...|+.++|.+.|++....
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 22333555556555556677777777777777643 56667777777777777777777777776654
No 205
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.95 E-value=0.21 Score=47.29 Aligned_cols=98 Identities=16% Similarity=0.048 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003082 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (850)
Q Consensus 324 ~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ 403 (850)
...|..+...+...|++++|...|+....... . ......+|..+...|...|++++|...++....... ....++..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~-~-~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI-D-PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-c-chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHH
Confidence 45667777777888999999999988876310 0 001234778888888999999999999988886532 23455666
Q ss_pred HHHHHH-------HcCCHHHHHHHHHHH
Q 003082 404 LINACA-------NAGLVEQAMHLFEEM 424 (850)
Q Consensus 404 li~~~~-------~~g~~~~A~~l~~~m 424 (850)
+...+. ..|+++.|...+++.
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 666666 677777666665544
No 206
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.92 E-value=0.072 Score=52.29 Aligned_cols=104 Identities=13% Similarity=0.127 Sum_probs=60.2
Q ss_pred CcCHHHHHHHHHHHhc-------cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH
Q 003082 512 KPTTTTYNILMKACCT-------DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVV 584 (850)
Q Consensus 512 ~p~~~t~~~li~~~~~-------~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 584 (850)
+.|-.+|-..+..+.. +.+-....++.|.+.|+.-|..+|+.||+.+-|..- .|..+
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~nv 127 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQNV 127 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHHH
Confidence 3344555555554431 234445555566666666666666666655443221 11111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003082 585 AYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSL 634 (850)
Q Consensus 585 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~~~g~~ 634 (850)
|-.+.--|= .+-.-+++++++|...|+.||..+-..|++++.+.|-.
T Consensus 128 -fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 128 -FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred -HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 111111111 23456889999999999999999999999999888763
No 207
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.18 Score=50.75 Aligned_cols=108 Identities=8% Similarity=-0.066 Sum_probs=76.4
Q ss_pred HHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcC---ChHHHHHHHHHH
Q 003082 175 VGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKR---DLVSALRAYDAS 247 (850)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~p~~~~~~~~li~~~~~~g---~~~~A~~~~~~m 247 (850)
+.-++.-+..+ |.+...|.-++..|...|+.+.|+..|.. .|++...+..+..++..+. ...++..+|+++
T Consensus 142 ~a~Le~~L~~n--P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~a 219 (287)
T COG4235 142 IARLETHLQQN--PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQA 219 (287)
T ss_pred HHHHHHHHHhC--CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 33344333433 88888888888888888888888877654 4777777666665555443 456788888888
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 248 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
+..+. -|+.+...|...+...|++.+|...++.|.+.
T Consensus 220 l~~D~-~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 220 LALDP-ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 87532 46666777777788888888888888888875
No 208
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.87 E-value=0.033 Score=43.32 Aligned_cols=52 Identities=19% Similarity=0.228 Sum_probs=27.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003082 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (850)
Q Consensus 375 ~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 427 (850)
+.|++++|..+|+++...... +...+..+..+|.+.|++++|..+++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445555555555555544322 4445555555555555555555555555543
No 209
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.15 Score=53.31 Aligned_cols=61 Identities=13% Similarity=0.131 Sum_probs=30.9
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHH-HHHHHHHHHHh
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYM-KSRAIYEDLRS 284 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~ 284 (850)
-+.+.-..+|...|+++.|+..|..+++. .| |-.+-+-|+.+--+...+. ...++|..|..
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444555555666666666666666653 34 3333444444333333332 33556666653
No 210
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.83 E-value=0.035 Score=43.34 Aligned_cols=62 Identities=13% Similarity=0.076 Sum_probs=49.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKSRAIYEDLRS 284 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 284 (850)
.+|..++..+...|++++|+..|++.++..+ .+...|..+..+|.+.| ++++|++.|+...+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 5677888888888999999999988888642 36667888888888888 68888888887664
No 211
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.68 E-value=0.28 Score=45.11 Aligned_cols=71 Identities=18% Similarity=0.307 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 003082 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ-----AGCEPNSQCC 436 (850)
Q Consensus 365 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~~~ 436 (850)
....++..+...|++++|..+...+.....- |...|..+|.+|...|+..+|.+.|+.+.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4455666677889999999999998876533 788899999999999999999999888754 4888887653
No 212
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.52 E-value=0.3 Score=43.28 Aligned_cols=87 Identities=16% Similarity=0.128 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHH---------------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 547 NHISWTILIDACGGSGNVEGALQILKIMRE---------------DGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (850)
Q Consensus 547 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~---------------~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 611 (850)
|..++..+|.++++.|+++....+++..-. ..+.|+..+..+++.+|+..|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 445777788888888888877777765421 12456777777777777777777777777777665
Q ss_pred -CCCCCCHHHHHHHHHHHHhcCC
Q 003082 612 -YQIQPNLVTYITLLRARSRYGS 633 (850)
Q Consensus 612 -~g~~p~~~t~~~li~a~~~~g~ 633 (850)
.++.-+..+|..|+.=+...-+
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhcC
Confidence 5676677777777765544433
No 213
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.49 E-value=0.31 Score=50.54 Aligned_cols=286 Identities=15% Similarity=0.058 Sum_probs=162.5
Q ss_pred HHhhhhcCcHHHHHHHHHHHHhCCCCCCCc----ccHHHHHHHHHcCCChHHHHHHhhh-------CCC---CcchHHHH
Q 003082 162 CQRLLDSGEVEMFVGLMEVLEEFRLPVKEL----DEEFRIVQLCVNKPDVNLAIRYACI-------VPR---ADILFCNF 227 (850)
Q Consensus 162 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~-------~p~---~~~~~~~l 227 (850)
..++++.|++...+.+|+..++.| .++. ..|..++.+|--.++|.+|++|+.. +.+ ...+.-+|
T Consensus 24 GERLck~gdcraGv~ff~aA~qvG--TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVG--TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhc--chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 456778899999999999999887 3332 2344566777777788888887533 111 11223345
Q ss_pred HHHHHhcCChHHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhc
Q 003082 228 VREFGKKRDLVSALRAYDASK----KHLSS-PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA 302 (850)
Q Consensus 228 i~~~~~~g~~~~A~~~~~~m~----~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~ 302 (850)
.+.+--.|.|++|+-...+-+ +.|-. -....+-.|...|...|+--.... -.+.|-.++.++ .
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~ev~-~------- 169 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAEVT-S------- 169 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHHHH-H-------
Confidence 666666677777765433221 11111 122344445555554443110000 000011111111 0
Q ss_pred CChHHHHHHHHH----HHHcCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhc-CCcccCHhHHHHHHHHHHhc
Q 003082 303 HDLKFTLEVYKN----MQKLGV-MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK-GVLKLDVFTYSTIVKVFADA 376 (850)
Q Consensus 303 ~~~~~a~~l~~~----m~~~g~-~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~-g~~~~d~~ty~~li~~~~~~ 376 (850)
.++.|.+.|.+ +.+.|- -.-...|..|-+.|.-.|+++.|....+.-...... |--......++.+-+++.-.
T Consensus 170 -al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 170 -ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred -HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 12223333322 122220 012345777777788889999998776544332211 11112345788888999999
Q ss_pred CCHHHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHh
Q 003082 377 KWWQMALKVKEDMLS----AGV-TPNTITWSSLINACANAGLVEQAMHLFEEMLQA-----GCEPNSQCCNILLQACVEA 446 (850)
Q Consensus 377 g~~~~A~~l~~~m~~----~g~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~~~~~~~ll~~~~~~ 446 (850)
|+++.|.+.|+.-.. .|- .....+.-+|.+.|.-..+++.|+.++..-+.- ...-....|-+|-.+|...
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 999999988876542 221 113345667788888788889998888654321 1233456778889999999
Q ss_pred CCHHHHHHHHHHHhhc
Q 003082 447 CQFDRAFRLFRSWTLS 462 (850)
Q Consensus 447 g~~~~A~~l~~~m~~~ 462 (850)
|..++|+...+.-...
T Consensus 329 g~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 329 GEHRKALYFAELHLRS 344 (639)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9999998887655443
No 214
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.48 E-value=1.5 Score=42.83 Aligned_cols=65 Identities=20% Similarity=0.148 Sum_probs=43.2
Q ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCh
Q 003082 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDL 237 (850)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~ 237 (850)
+...+..+...|++.+|+..|+.+.... |.+... ..+...++.++.+.|++
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~--P~s~~a---------------------------~~A~l~la~a~y~~~~y 58 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRY--PNSPYA---------------------------PQAQLMLAYAYYKQGDY 58 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTH---------------------------HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCChHH---------------------------HHHHHHHHHHHHHcCCH
Confidence 4444555667889999999988887654 433221 14455678888888999
Q ss_pred HHHHHHHHHHHhCC
Q 003082 238 VSALRAYDASKKHL 251 (850)
Q Consensus 238 ~~A~~~~~~m~~~g 251 (850)
+.|...|++.++.-
T Consensus 59 ~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 59 EEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHC
Confidence 99999998887753
No 215
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.46 E-value=6.1 Score=44.84 Aligned_cols=126 Identities=17% Similarity=0.185 Sum_probs=94.4
Q ss_pred HHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 003082 309 LEVYKNMQK-LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387 (850)
Q Consensus 309 ~~l~~~m~~-~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~ 387 (850)
+.+.+.+.. .|..-..-+.+--+.-+...|+..+|.++-.+.+ -||-..|--=+.+++..++|++-+++-.
T Consensus 668 l~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk--------ipdKr~~wLk~~aLa~~~kweeLekfAk 739 (829)
T KOG2280|consen 668 LKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK--------IPDKRLWWLKLTALADIKKWEELEKFAK 739 (829)
T ss_pred HHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC--------CcchhhHHHHHHHHHhhhhHHHHHHHHh
Confidence 344444432 3434445566666777788899999998877664 4788888888999999999999888776
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 003082 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457 (850)
Q Consensus 388 ~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~ 457 (850)
.++ .+.-|.-.+.+|.+.|+.++|.+.+.... +.. -.+.+|.+.|++.+|.++--
T Consensus 740 skk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 740 SKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred ccC------CCCCchhHHHHHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHHH
Confidence 654 35568888999999999999999987653 111 56789999999999887653
No 216
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.42 E-value=3.9 Score=42.29 Aligned_cols=174 Identities=11% Similarity=-0.012 Sum_probs=88.3
Q ss_pred hhcCChHHHHHHHHHHHHhc--CChhhHhhhhHHHHHHHHHHHhhhcC-chhHHHHHHHHHHHc----C-CCCccccchh
Q 003082 82 AKDGRLEEFAMIVESVVVSE--GNVSKFASMLSLEMVASGIVKSIREG-RIDCVVGVLKKLNEL----G-VAPLELFDGS 153 (850)
Q Consensus 82 ~~~g~~~~A~~l~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~l~~~~~~----~-~~p~~~~~~~ 153 (850)
.+.|+++-|..++.++.... .+|.... .+....+..+. .....+ ++++|...++++.+. + ..........
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~-~La~~~yn~G~-~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAE-ELARVCYNIGK-SLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHH-HHHHHHHHHHH-HHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 35799999999999987653 3444433 23233333333 444666 999999999988754 1 1111110000
Q ss_pred -hhHHHHHHHHhhhhcCcH---HHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHH
Q 003082 154 -GFKLLKNECQRLLDSGEV---EMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (850)
Q Consensus 154 -~~~~l~~~~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~ 229 (850)
-+.++..+...+...+.. ++|..+++.+... .|+....+..-+.
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--------------------------------~~~~~~~~~L~l~ 129 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESE--------------------------------YGNKPEVFLLKLE 129 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--------------------------------CCCCcHHHHHHHH
Confidence 011111122222222222 2223333332211 2333344545566
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCcCH
Q 003082 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVC---GICGDYMKSRAIYEDLRSQNVTLNI 291 (850)
Q Consensus 230 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~pd~ 291 (850)
.+.+.++.+.+.+++.+|+..-. -....+..++..+ ... ....|...++.+....+.|..
T Consensus 130 il~~~~~~~~~~~~L~~mi~~~~-~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 130 ILLKSFDEEEYEEILMRMIRSVD-HSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHhccCChhHHHHHHHHHHHhcc-cccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 66668888999999999887522 1223344444433 333 334566666666554444443
No 217
>PRK15331 chaperone protein SicA; Provisional
Probab=95.31 E-value=0.39 Score=44.03 Aligned_cols=86 Identities=12% Similarity=-0.047 Sum_probs=67.8
Q ss_pred HhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHH
Q 003082 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (850)
Q Consensus 122 ~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (850)
.+-.+|++++|..+|.-+.- ..|.. .+.+..++..+-..+++++|+..|....... ++++..++..+..+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~--~d~~n------~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--~~dp~p~f~agqC~ 115 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCI--YDFYN------PDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--KNDYRPVFFTGQCQ 115 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHH--hCcCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCCCccchHHHHH
Confidence 34589999999999999884 45544 3334445445556799999999998876554 67888899999999
Q ss_pred HcCCChHHHHHHhhhC
Q 003082 202 VNKPDVNLAIRYACIV 217 (850)
Q Consensus 202 ~~~~~~~~A~~~~~~~ 217 (850)
...|+...|...|..+
T Consensus 116 l~l~~~~~A~~~f~~a 131 (165)
T PRK15331 116 LLMRKAAKARQCFELV 131 (165)
T ss_pred HHhCCHHHHHHHHHHH
Confidence 9999999999988765
No 218
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.29 E-value=7.4 Score=44.80 Aligned_cols=178 Identities=12% Similarity=0.082 Sum_probs=119.3
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhh
Q 003082 75 ADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSG 154 (850)
Q Consensus 75 ~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~ 154 (850)
..-+..+.+...|+.|+.+.+.- +.+++.. ..+. ......+-..|++++|...|-+.+. -+.|+.
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~-~~i~----~kYgd~Ly~Kgdf~~A~~qYI~tI~-~le~s~------ 402 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQ---HLDEDTL-AEIH----RKYGDYLYGKGDFDEATDQYIETIG-FLEPSE------ 402 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhc---CCCHHHH-HHHH----HHHHHHHHhcCCHHHHHHHHHHHcc-cCChHH------
Confidence 35567788889999998886543 2233321 1111 1111223478999999999988873 234432
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcch--HHHHHHHHH
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADIL--FCNFVREFG 232 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~--~~~li~~~~ 232 (850)
.+..+.+..+..+-..+++.+.+.++. .......|+..|.+.++.+.-.++.+..+..... ....+..+.
T Consensus 403 ------Vi~kfLdaq~IknLt~YLe~L~~~gla--~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr 474 (933)
T KOG2114|consen 403 ------VIKKFLDAQRIKNLTSYLEALHKKGLA--NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILR 474 (933)
T ss_pred ------HHHHhcCHHHHHHHHHHHHHHHHcccc--cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHH
Confidence 234455667777888889999988844 3445667889999999999998888887744433 445677788
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003082 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (850)
Q Consensus 233 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (850)
+.+-.++|..+-.... .+......++. ..|++++|++.+..|.
T Consensus 475 ~snyl~~a~~LA~k~~-----~he~vl~ille---~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 475 KSNYLDEAELLATKFK-----KHEWVLDILLE---DLHNYEEALRYISSLP 517 (933)
T ss_pred HhChHHHHHHHHHHhc-----cCHHHHHHHHH---HhcCHHHHHHHHhcCC
Confidence 8888888876544332 24555555554 6788999999998764
No 219
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.26 E-value=5 Score=42.66 Aligned_cols=93 Identities=8% Similarity=0.045 Sum_probs=61.0
Q ss_pred cchhhccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHH
Q 003082 57 TALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVL 136 (850)
Q Consensus 57 ~~~l~~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l 136 (850)
+-+-+.++.+|+. +..|-.|+..|..+|.+++-.+.|+++...-+-..+ . +..+ +++=+...++..+..+|
T Consensus 29 lrLRerIkdNPtn-I~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~---a--w~ly---~s~ELA~~df~svE~lf 99 (660)
T COG5107 29 LRLRERIKDNPTN-ILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEH---A--WRLY---MSGELARKDFRSVESLF 99 (660)
T ss_pred HHHHHHhhcCchh-HHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccH---H--HHHH---hcchhhhhhHHHHHHHH
Confidence 3455578888888 888889999999999999999999999865321111 1 1111 11222447788888888
Q ss_pred HHHHHcCCCCccccchhhhHHHHHHHHh
Q 003082 137 KKLNELGVAPLELFDGSGFKLLKNECQR 164 (850)
Q Consensus 137 ~~~~~~~~~p~~~~~~~~~~~l~~~~~~ 164 (850)
.+.+...+..| +..+++...++
T Consensus 100 ~rCL~k~l~ld------LW~lYl~YIRr 121 (660)
T COG5107 100 GRCLKKSLNLD------LWMLYLEYIRR 121 (660)
T ss_pred HHHHhhhccHh------HHHHHHHHHHh
Confidence 88876544432 34555544443
No 220
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.24 E-value=0.089 Score=41.00 Aligned_cols=64 Identities=19% Similarity=0.168 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 003082 547 NHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSK-RLKQAFSLFEEMKH 611 (850)
Q Consensus 547 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g-~~~~A~~l~~~m~~ 611 (850)
+..+|..+...+...|++++|+..|++..+.. +-+...|..+..+|.+.| ++++|++.|++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45677888888888888888888888888753 335667888888888888 68888888887764
No 221
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.12 E-value=0.13 Score=40.64 Aligned_cols=57 Identities=11% Similarity=-0.014 Sum_probs=46.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 228 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
...|.+.+++++|+++++.++..++ .+...|.....++.+.|++++|.+.|+...+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3567888899999999998888643 36667778888888899999999999888866
No 222
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.11 E-value=2.8 Score=39.00 Aligned_cols=133 Identities=14% Similarity=0.086 Sum_probs=101.7
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCH
Q 003082 320 VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-PNT 398 (850)
Q Consensus 320 ~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~ 398 (850)
+.|++..--.|..++.+.|+..+|...|++.. .|.+..|....-.+.++....++..+|...++++.+.... -+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qal----sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQAL----SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHh----ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC
Confidence 35677777788999999999999999999877 4767788888888888899999999999999998876421 123
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003082 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (850)
Q Consensus 399 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~ 458 (850)
.+.-.+.+.+...|...+|..-|+..... -|+...-...-..+.+.|+.+++..-+..
T Consensus 161 d~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 161 DGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred CchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 34556778899999999999999999875 45554433344456688887777654443
No 223
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.04 E-value=5.4 Score=41.88 Aligned_cols=110 Identities=16% Similarity=0.184 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003082 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404 (850)
Q Consensus 325 ~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~l 404 (850)
.+.+..|.-+...|+...|.++-.+.+ -||..-|-..+.+|+..++|++-.++-.. +-++.-|-.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk--------v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepF 243 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK--------VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPF 243 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC--------CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHH
Confidence 455666777788899999988876653 37888999999999999999988876432 2245789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003082 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (850)
Q Consensus 405 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~ 458 (850)
+.+|.+.|+..+|..+...+ .+..-+..|.++|++.+|.+.-.+
T Consensus 244 v~~~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 244 VEACLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999888772 235567888999999999876543
No 224
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.87 E-value=3.6 Score=42.65 Aligned_cols=146 Identities=14% Similarity=0.225 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHhcc----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CC----CHHHHHHHHHHHHHCC---CCC
Q 003082 515 TTTYNILMKACCTD----YYRVKALMNEMRTVGLSPNHISWTILIDACGG--SG----NVEGALQILKIMREDG---MSP 581 (850)
Q Consensus 515 ~~t~~~li~~~~~~----~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~--~g----~~~~A~~l~~~m~~~g---~~p 581 (850)
..++.+++.....+ .++...+++.|.+.|+.-+..+|-+..-.... .. ....|..+++.|++.. -.+
T Consensus 60 ~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~ 139 (297)
T PF13170_consen 60 RFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSP 139 (297)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCc
Confidence 45555555555443 46778899999999999888887663333322 22 3667999999999853 134
Q ss_pred CHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCH
Q 003082 582 DVVAYTTAIKVCVRSKR----LKQAFSLFEEMKHYQIQP-NLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKAND 656 (850)
Q Consensus 582 d~~ty~~li~~~~~~g~----~~~A~~l~~~m~~~g~~p-~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~~g~~p~~ 656 (850)
+...+..++.. ..++ .+.+..+|+.+.+.|+.. |..-+.+-+-+++.....+.+.++.++++.+.+.|+++..
T Consensus 140 ~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~ 217 (297)
T PF13170_consen 140 EDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKY 217 (297)
T ss_pred cchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccc
Confidence 56677777655 3333 456788899999988876 4546666666666665555688999999999999999887
Q ss_pred HHHHHH
Q 003082 657 TYLKEL 662 (850)
Q Consensus 657 ~~~~~l 662 (850)
..|..+
T Consensus 218 ~~yp~l 223 (297)
T PF13170_consen 218 MHYPTL 223 (297)
T ss_pred ccccHH
Confidence 776543
No 225
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.86 E-value=5.2 Score=44.41 Aligned_cols=98 Identities=16% Similarity=0.192 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003082 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404 (850)
Q Consensus 325 ~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~l 404 (850)
.+.-.+..-+.+...+..|.++|..|-.+ ..++......++|++|+.+-+..-+ ..||+ |---
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~-------------ksiVqlHve~~~W~eAFalAe~hPe--~~~dV--y~py 810 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL-------------KSLVQLHVETQRWDEAFALAEKHPE--FKDDV--YMPY 810 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH-------------HHHhhheeecccchHhHhhhhhCcc--ccccc--cchH
Confidence 34434444444555666777777766431 2355566677777777777665433 22332 3333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 003082 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (850)
Q Consensus 405 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 461 (850)
.+.++...++++|. .+|.+.|+..+|.++++++..
T Consensus 811 aqwLAE~DrFeEAq----------------------kAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 811 AQWLAENDRFEEAQ----------------------KAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHhhhhhhHHHHH----------------------HHHHHhcchHHHHHHHHHhhh
Confidence 34444444444443 356677888888888887754
No 226
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.84 E-value=0.46 Score=50.99 Aligned_cols=66 Identities=11% Similarity=-0.036 Sum_probs=57.1
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNM----YICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 218 p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
|.....++++..+|.+.|++++|+..|++.++.. |+. .+|..+..+|...|++++|++.|+...+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5555888999999999999999999999988854 542 46999999999999999999999998875
No 227
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.68 E-value=0.55 Score=46.39 Aligned_cols=80 Identities=14% Similarity=0.177 Sum_probs=49.4
Q ss_pred cccccccCCCcCHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 003082 503 SSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPD 582 (850)
Q Consensus 503 ~~~~~~~~~~p~~~t~~~li~~~~~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 582 (850)
+..|+.+|+..|..+|+.||+.+-+ ..+.|....-...+ -|-+ +-+-+.+++++|...|+.||
T Consensus 95 Lk~m~eyGVerDl~vYk~LlnvfPK--------------gkfiP~nvfQ~~F~-HYP~--QQ~C~I~vLeqME~hGVmPd 157 (406)
T KOG3941|consen 95 LKYMKEYGVERDLDVYKGLLNVFPK--------------GKFIPQNVFQKVFL-HYPQ--QQNCAIKVLEQMEWHGVMPD 157 (406)
T ss_pred HHHHHHhcchhhHHHHHHHHHhCcc--------------cccccHHHHHHHHh-hCch--hhhHHHHHHHHHHHcCCCCc
Confidence 3456777888888888887776543 22233222222122 1222 12346778888888888888
Q ss_pred HHHHHHHHHHHHHcCCH
Q 003082 583 VVAYTTAIKVCVRSKRL 599 (850)
Q Consensus 583 ~~ty~~li~~~~~~g~~ 599 (850)
-.+-..|+++|.+.|..
T Consensus 158 kE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 158 KEIEDILVNAFGRWNFP 174 (406)
T ss_pred hHHHHHHHHHhcccccc
Confidence 88888888888777653
No 228
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.64 E-value=0.55 Score=41.59 Aligned_cols=82 Identities=15% Similarity=0.120 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003082 582 DVVAYTTAIKVCVRSKRLKQAFSLFEEMK---------------HYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQD 646 (850)
Q Consensus 582 d~~ty~~li~~~~~~g~~~~A~~l~~~m~---------------~~g~~p~~~t~~~li~a~~~~g~~~~a~~a~~l~~~ 646 (850)
|..++.++|-++++.|+++....+++..= ...+.|+..+..+++.+|+..|++.. |+++.+.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~---al~~vd~ 77 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFS---ALKLVDF 77 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHH---HHHHHHH
Confidence 56789999999999999999999987652 12356999999999999999999877 6666666
Q ss_pred HHH-cCCCCCHHHHHHHHHHH
Q 003082 647 MWK-AGYKANDTYLKELIEEW 666 (850)
Q Consensus 647 M~~-~g~~p~~~~~~~li~~~ 666 (850)
..+ .++..+..+|..|++..
T Consensus 78 fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 78 FSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHHcCCCCCHHHHHHHHHHH
Confidence 665 67888899999998753
No 229
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.63 E-value=0.13 Score=40.62 Aligned_cols=56 Identities=16% Similarity=0.165 Sum_probs=43.6
Q ss_pred HhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCC
Q 003082 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (850)
Q Consensus 122 ~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (850)
.|.+++++++|++.+++++ .+.|+. ...+...+..+...|++++|.+.++..++..
T Consensus 4 ~~~~~~~~~~A~~~~~~~l--~~~p~~------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERAL--ELDPDD------PELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHhCCCHHHHHHHHHHHH--HhCccc------chhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3558899999999999998 557764 4455666677778899999999999888765
No 230
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.36 E-value=1 Score=41.20 Aligned_cols=122 Identities=9% Similarity=0.020 Sum_probs=75.6
Q ss_pred hhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCc---chH---HH--HHHHHHhcC
Q 003082 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD---ILF---CN--FVREFGKKR 235 (850)
Q Consensus 164 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~---~~~---~~--li~~~~~~g 235 (850)
.+++.+..++|+..|..+.+-|...-........+....+.|+-..|+.+|..+..+. ... .. -.-.+...|
T Consensus 67 ~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 67 KLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccc
Confidence 4556788899999999998776543333344445556677788888887776642211 111 11 233445667
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 236 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
.|++.....+.+...+-+.-...-.+|.-+-.+.|++.+|.+.|..+...
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 77777766666554443333444556666666777777777777777654
No 231
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.33 E-value=1.7 Score=47.87 Aligned_cols=44 Identities=14% Similarity=0.127 Sum_probs=23.3
Q ss_pred CChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHH
Q 003082 85 GRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (850)
Q Consensus 85 g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~ 138 (850)
-++-+-+--++++.+.|..|... +.... ++-+|++.+|..+|.+
T Consensus 614 l~~L~li~EL~~~k~rge~P~~i---LlA~~-------~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 614 LRYLELISELEERKKRGETPNDL---LLADV-------FAYQGKFHEAAKLFKR 657 (1081)
T ss_pred cHHHHHHHHHHHHHhcCCCchHH---HHHHH-------HHhhhhHHHHHHHHHH
Confidence 34444555566666666556632 21222 2245777777776654
No 232
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.10 E-value=0.4 Score=47.66 Aligned_cols=98 Identities=11% Similarity=0.018 Sum_probs=59.7
Q ss_pred HHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChH
Q 003082 159 KNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLV 238 (850)
Q Consensus 159 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~ 238 (850)
.+.+..+...|++.+|...|...++.. |++..+. .+++=|+..+..+|+++
T Consensus 145 Y~~A~~~~ksgdy~~A~~~F~~fi~~Y--P~s~~~~---------------------------nA~yWLGe~~y~qg~y~ 195 (262)
T COG1729 145 YNAALDLYKSGDYAEAEQAFQAFIKKY--PNSTYTP---------------------------NAYYWLGESLYAQGDYE 195 (262)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCcccc---------------------------hhHHHHHHHHHhcccch
Confidence 344445556788888888888877765 5543222 34444666666677777
Q ss_pred HHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 239 SALRAYDASKKHLSS-P-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 239 ~A~~~~~~m~~~g~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
+|..+|..+.+.-+. | -...+--|.....+.|+.++|...|+++.+.
T Consensus 196 ~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 196 DAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 777776666654221 1 2245555556666667777777777776655
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.02 E-value=2.6 Score=47.11 Aligned_cols=124 Identities=11% Similarity=-0.108 Sum_probs=70.1
Q ss_pred HHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHh----h-h---hcCcHHHHHHHHHHHHhCCCCCCCc
Q 003082 120 IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQR----L-L---DSGEVEMFVGLMEVLEEFRLPVKEL 191 (850)
Q Consensus 120 ~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~----~-~---~~g~~~~A~~~~~~~~~~~~~~~~~ 191 (850)
+....-.|+-+.+++.+.+..+.+ +. ...+-.+.+-.... + . .....+.|.++++.+.+.- |++.
T Consensus 195 l~~vGF~gdR~~GL~~L~~~~~~~---~i--~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~ 267 (468)
T PF10300_consen 195 LSFVGFSGDRELGLRLLWEASKSE---NI--RSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSA 267 (468)
T ss_pred HhhcCcCCcHHHHHHHHHHHhccC---Cc--chHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcH
Confidence 444456799999999999887532 11 01111111111111 1 1 2456677888888887654 6665
Q ss_pred ccHHHHHHHHHcCCChHHHHHHhhhCCC--------CcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003082 192 DEEFRIVQLCVNKPDVNLAIRYACIVPR--------ADILFCNFVREFGKKRDLVSALRAYDASKKH 250 (850)
Q Consensus 192 ~~~~~l~~~~~~~~~~~~A~~~~~~~p~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 250 (850)
.-...-++.+...|++++|++.|+..-. ....+..++-.+.-.++|++|...|..+.+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 5555556666677777777777664211 1133444555566666666666666666653
No 234
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.89 E-value=0.91 Score=40.68 Aligned_cols=83 Identities=17% Similarity=0.085 Sum_probs=56.6
Q ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCh
Q 003082 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDL 237 (850)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~ 237 (850)
+...+....+.|++++|++.|+.+...- |-+..+ ..+...|+.+|.+.+++
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ry--P~g~ya---------------------------~qAqL~l~yayy~~~~y 63 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRY--PFGEYA---------------------------EQAQLDLAYAYYKQGDY 63 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCCccc---------------------------HHHHHHHHHHHHHccCH
Confidence 3444455567899999999999887654 433211 24555789999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003082 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGIC 269 (850)
Q Consensus 238 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 269 (850)
++|+..+++.++..+.....-|-..+.+++..
T Consensus 64 ~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 64 EEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 99999999999876543334455555554443
No 235
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.82 E-value=7.5 Score=38.40 Aligned_cols=141 Identities=16% Similarity=0.199 Sum_probs=101.7
Q ss_pred HHHHHHHhhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHH
Q 003082 293 VFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370 (850)
Q Consensus 293 t~~~ll~~~~~--~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li 370 (850)
+-+.++.+..| .+.-...+++++++...+.++.....|.+.-.+.|+.+.|...|+.+.+. .+ +.|..+++.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~--~~--kL~~~q~~~~V 254 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV--TQ--KLDGLQGKIMV 254 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH--Hh--hhhccchhHHH
Confidence 34455555554 45556788899988877788899999999999999999999999987752 22 34555555444
Q ss_pred H-----HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003082 371 K-----VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440 (850)
Q Consensus 371 ~-----~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll 440 (850)
. .|.-.+++.+|...+.++...+.. |....|.=.-+..-.|+..+|++.++.|.+. .|...+-++++
T Consensus 255 ~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 255 LMNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred HhhhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 3 355678899999999888876543 6666666555556678999999999999885 45555544443
No 236
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.78 E-value=1.3 Score=39.66 Aligned_cols=72 Identities=10% Similarity=0.063 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~ 149 (850)
...+-.-+....+.|+|++|+..|+.+....+... + . -..-..++-++.++|++++|+..+++.+ .+.|.+.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~-y-a---~qAqL~l~yayy~~~~y~~A~a~~~rFi--rLhP~hp 81 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE-Y-A---EQAQLDLAYAYYKQGDYEEAIAAYDRFI--RLHPTHP 81 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc-c-c---HHHHHHHHHHHHHccCHHHHHHHHHHHH--HhCCCCC
Confidence 44555667788889999999999999998843211 1 1 1111234456779999999999999999 5577654
No 237
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.77 E-value=3.5 Score=42.71 Aligned_cols=133 Identities=14% Similarity=0.229 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--h----CCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhc
Q 003082 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVE--A----CQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487 (850)
Q Consensus 414 ~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~--~----g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (850)
+++.+.+++.|.+.|+.-+..+|-+..-.... . ....+|..+|+.|++...-.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fL--------------------- 136 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFL--------------------- 136 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccc---------------------
Confidence 45667777888888888777666553322222 1 23456777777777653211
Q ss_pred ccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhcc----HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCC
Q 003082 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD----YYRVKALMNEMRTVGLSPNHI-SWTILIDACGGSG 562 (850)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~~----~~~a~~l~~~m~~~g~~p~~~-ty~~li~~~~~~g 562 (850)
..++...+..++..-..+ .+.++.+|+.+.+.|+..+.. -+.+-|-+++...
T Consensus 137 -----------------------Ts~~D~~~a~lLA~~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~ 193 (297)
T PF13170_consen 137 -----------------------TSPEDYPFAALLAMTSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGD 193 (297)
T ss_pred -----------------------cCccchhHHHHHhcccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhcccc
Confidence 145556666665554332 356666677777766665322 2222222222221
Q ss_pred ---CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003082 563 ---NVEGALQILKIMREDGMSPDVVAYTTAI 590 (850)
Q Consensus 563 ---~~~~A~~l~~~m~~~g~~pd~~ty~~li 590 (850)
.+..+..+++.+.+.|+++....|..+.
T Consensus 194 ~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 194 DQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred chHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 1345666666666666666666555443
No 238
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.43 E-value=0.82 Score=45.54 Aligned_cols=102 Identities=12% Similarity=0.075 Sum_probs=74.2
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccch
Q 003082 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDG 152 (850)
Q Consensus 73 ~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~ 152 (850)
.|. .+-.+.+.|+|.+|...|..+++.+++-. +.. .....|+ ..+..+|++++|...|..+.+. .|+..
T Consensus 144 ~Y~-~A~~~~ksgdy~~A~~~F~~fi~~YP~s~-~~~-nA~yWLG---e~~y~qg~y~~Aa~~f~~~~k~--~P~s~--- 212 (262)
T COG1729 144 LYN-AALDLYKSGDYAEAEQAFQAFIKKYPNST-YTP-NAYYWLG---ESLYAQGDYEDAAYIFARVVKD--YPKSP--- 212 (262)
T ss_pred HHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCCc-ccc-hhHHHHH---HHHHhcccchHHHHHHHHHHHh--CCCCC---
Confidence 554 45556777889999999999999864311 111 1112222 2445899999999999999864 45432
Q ss_pred hhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCC
Q 003082 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (850)
Q Consensus 153 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (850)
-+-+.+++++..+.+.|+.++|...|+++.+.-
T Consensus 213 KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 213 KAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 235778999999999999999999999998764
No 239
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.39 E-value=2.7 Score=40.96 Aligned_cols=201 Identities=14% Similarity=0.049 Sum_probs=95.1
Q ss_pred HHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHH
Q 003082 116 VASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEF 195 (850)
Q Consensus 116 ~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 195 (850)
+.....+|-...+++.|...+.++.+. .+-+. .+..++ ..++.|.-+.+++.... .....+.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnr--------slfhAA------KayEqaamLake~~kls---Evvdl~e 95 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNR--------SLFHAA------KAYEQAAMLAKELSKLS---EVVDLYE 95 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcc--------cHHHHH------HHHHHHHHHHHHHHHhH---HHHHHHH
Confidence 333344455668888888888777742 11111 122222 33455555555554432 2222333
Q ss_pred HHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC---CC--CCCHHHHHHHHHHHHhcC
Q 003082 196 RIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH---LS--SPNMYICRTIIDVCGICG 270 (850)
Q Consensus 196 ~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~p~~~~~~~li~~~~~~g 270 (850)
.....|.+.|.++-|--.+++. .-....-++++|+++|.+...- +- ..-...+..+-+.+.+..
T Consensus 96 KAs~lY~E~GspdtAAmaleKA-----------ak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 96 KASELYVECGSPDTAAMALEKA-----------AKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE 164 (308)
T ss_pred HHHHHHHHhCCcchHHHHHHHH-----------HHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence 4445566666665443333221 0112234566666666654331 10 011223445555566666
Q ss_pred CHHHHHHHHHHHHhC----CCCcCH---HHHHHHHHhhcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCCh
Q 003082 271 DYMKSRAIYEDLRSQ----NVTLNI---YVFNSLMNVNAHDLKFTLEVYKNMQKLG---VMADMASYNILLKACCLAGNT 340 (850)
Q Consensus 271 ~~~~A~~~~~~m~~~----g~~pd~---~t~~~ll~~~~~~~~~a~~l~~~m~~~g---~~pd~~t~~~Ll~~~~~~g~~ 340 (850)
++.+|-..|..-... .-.++. +.-.+|+..+.+++..|...++.--+.+ -.-+..+...||.+| ..|+.
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~ 243 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDI 243 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCH
Confidence 666665544332211 011222 2222333345567777777776643322 223455666666666 44666
Q ss_pred HHHHHH
Q 003082 341 VLAQEI 346 (850)
Q Consensus 341 ~~A~~i 346 (850)
+++..+
T Consensus 244 E~~~kv 249 (308)
T KOG1585|consen 244 EEIKKV 249 (308)
T ss_pred HHHHHH
Confidence 555444
No 240
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.21 E-value=1.8 Score=37.70 Aligned_cols=87 Identities=14% Similarity=0.101 Sum_probs=58.5
Q ss_pred HHHcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHHhcCCH
Q 003082 200 LCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICR---TIIDVCGICGDY 272 (850)
Q Consensus 200 ~~~~~~~~~~A~~~~~~----~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~---~li~~~~~~g~~ 272 (850)
+..+.|+.+.|++.|.+ .|....+|++-..++.-+|+.++|+.=+++.++..-..+...+. .-...|...|+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 34455555555555433 46777888888888888899999988888877652222222233 333457788888
Q ss_pred HHHHHHHHHHHhCC
Q 003082 273 MKSRAIYEDLRSQN 286 (850)
Q Consensus 273 ~~A~~~~~~m~~~g 286 (850)
+.|..-|+...+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 88888888877665
No 241
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.13 E-value=2.3 Score=46.87 Aligned_cols=157 Identities=9% Similarity=0.084 Sum_probs=94.5
Q ss_pred HHhhcCChHHHHHHHHHHH-HhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHH
Q 003082 80 KLAKDGRLEEFAMIVESVV-VSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLL 158 (850)
Q Consensus 80 ~l~~~g~~~~A~~l~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l 158 (850)
...-.|+++++..+.+.-. -..++ -.....+++.+-++|..+.|+++-..-... +++-
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~---------~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r------------FeLA 328 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP---------KDQGQSIARFLEKKGYPELALQFVTDPDHR------------FELA 328 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG-----------HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH------------HHHH
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC---------hhHHHHHHHHHHHCCCHHHHHhhcCChHHH------------hHHH
Confidence 3455688888776664111 11111 122334445556788898888874332211 3333
Q ss_pred HHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChH
Q 003082 159 KNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLV 238 (850)
Q Consensus 159 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~ 238 (850)
+ +.|+.+.|.+..+. .++...|..|+.....+|+.+.|+..|.+.. -+..|.-.|.-.|+.+
T Consensus 329 l-------~lg~L~~A~~~a~~-------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~----d~~~L~lLy~~~g~~~ 390 (443)
T PF04053_consen 329 L-------QLGNLDIALEIAKE-------LDDPEKWKQLGDEALRQGNIELAEECYQKAK----DFSGLLLLYSSTGDRE 390 (443)
T ss_dssp H-------HCT-HHHHHHHCCC-------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----HHHHHHHHHHCT-HH
T ss_pred H-------hcCCHHHHHHHHHh-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc----CccccHHHHHHhCCHH
Confidence 3 67999988886543 3455679999999999999999999998774 3667778888889888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003082 239 SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281 (850)
Q Consensus 239 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 281 (850)
.-.++-+.....|. +|....++...|+.++..+++.+
T Consensus 391 ~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 391 KLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 87777777666542 44445555567888888777764
No 242
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.11 E-value=3.4 Score=39.52 Aligned_cols=81 Identities=12% Similarity=0.030 Sum_probs=54.3
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CcCHHHHH
Q 003082 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV-TLNIYVFN 295 (850)
Q Consensus 217 ~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~t~~ 295 (850)
-|+-+.+||-|+--+...|+++.|.+.|+...+.++.-+-...|.-|..| -.|++.-|.+-|...-+... .|-...|-
T Consensus 95 ~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWL 173 (297)
T COG4785 95 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQDDPNDPFRSLWL 173 (297)
T ss_pred CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhcCCCChHHHHHH
Confidence 36666888888888888999999999999888865544444445544433 56888888877776665432 24444444
Q ss_pred HHH
Q 003082 296 SLM 298 (850)
Q Consensus 296 ~ll 298 (850)
-+.
T Consensus 174 Yl~ 176 (297)
T COG4785 174 YLN 176 (297)
T ss_pred HHH
Confidence 444
No 243
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.02 E-value=2.2 Score=47.73 Aligned_cols=168 Identities=14% Similarity=-0.036 Sum_probs=108.2
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhh----cCchhHHHHHHHHHHHcCCCCcc
Q 003082 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIR----EGRIDCVVGVLKKLNELGVAPLE 148 (850)
Q Consensus 73 ~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~l~~~~~~~~~p~~ 148 (850)
....+++...=.|+-+..++++....+.+ +....-..+.+-.+..++..++. ....+.|.++++.+. ..-|+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~-~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~--~~yP~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSE-NIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEML--KRYPNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccC-CcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHH--HhCCCc
Confidence 35567777777899999999999887743 32322222223333444443333 456788999999998 447765
Q ss_pred ccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHh--CCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCC---cch
Q 003082 149 LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEE--FRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA---DIL 223 (850)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~---~~~ 223 (850)
. =.+...++.+...|+.++|++.|+.... ...+.-....++.++-.+.-..++++|..+|..+-.. ..+
T Consensus 267 ~------lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka 340 (468)
T PF10300_consen 267 A------LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKA 340 (468)
T ss_pred H------HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHH
Confidence 2 2344456667778999999999997653 2222223445566778888899999999998876332 222
Q ss_pred HH--HHHHHHHhcCCh-------HHHHHHHHHHHh
Q 003082 224 FC--NFVREFGKKRDL-------VSALRAYDASKK 249 (850)
Q Consensus 224 ~~--~li~~~~~~g~~-------~~A~~~~~~m~~ 249 (850)
++ ..+..+...|+. ++|.++|.+...
T Consensus 341 ~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 341 FYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 22 235555566776 777777766543
No 244
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.87 E-value=3.1 Score=42.90 Aligned_cols=116 Identities=12% Similarity=0.103 Sum_probs=58.3
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCCC----cccHHHHHHHHHcCCChHHHHHHhhhC-------C-CC------cchHHHHH
Q 003082 167 DSGEVEMFVGLMEVLEEFRLPVKE----LDEEFRIVQLCVNKPDVNLAIRYACIV-------P-RA------DILFCNFV 228 (850)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~-------p-~~------~~~~~~li 228 (850)
..+.++++++.|+......-..++ ...+-.++..|.+..++++|+-+...+ . ++ ..+.+.+.
T Consensus 134 gls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhma 213 (518)
T KOG1941|consen 134 GLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMA 213 (518)
T ss_pred hHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHH
Confidence 346666777776665543322222 223344566666666666665554332 0 00 02233455
Q ss_pred HHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003082 229 REFGKKRDLVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYEDL 282 (850)
Q Consensus 229 ~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 282 (850)
-++...|+..+|.+.-++..+. |-.+ -....-.+.+.|...|+.+.|+.-|++.
T Consensus 214 ValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 214 VALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 5666666666666666554332 2222 1223344556666666666666666553
No 245
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.59 E-value=8.5 Score=35.55 Aligned_cols=126 Identities=11% Similarity=0.014 Sum_probs=88.1
Q ss_pred hhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHH--HHH
Q 003082 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRI--VQL 200 (850)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l--~~~ 200 (850)
..+.|+.++|+..|..+.+.|... ++. -..........+.|+..+|+..|.++-.-...|...-....+ +-.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~----Ypv--LA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~l 141 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGS----YPV--LARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYL 141 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCc----chH--HHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHH
Confidence 347899999999999999776443 222 234555677788999999999999987654333222122222 334
Q ss_pred HHcCCChHHHHHHhhhCCCCc-----chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 003082 201 CVNKPDVNLAIRYACIVPRAD-----ILFCNFVREFGKKRDLVSALRAYDASKKHLSSP 254 (850)
Q Consensus 201 ~~~~~~~~~A~~~~~~~p~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 254 (850)
++..|.|+......+.+..+. ..-..|.-+-.+.|++..|.+.|+.+......|
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 567899998887776653322 334468888889999999999999998754444
No 246
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.58 E-value=17 Score=38.85 Aligned_cols=77 Identities=10% Similarity=0.000 Sum_probs=49.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCcCHHHHH
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHL---SSPNMYICRTIIDVCGI---CGDYMKSRAIYEDLRSQNVTLNIYVFN 295 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~ 295 (850)
.+..+++-.|....+|+..+++++.+.... +.-...+-....-++-+ .|+.++|++++..+....-.++..+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 444566677999999999999999987641 11122222233444556 788999999988866554455555555
Q ss_pred HHH
Q 003082 296 SLM 298 (850)
Q Consensus 296 ~ll 298 (850)
.+-
T Consensus 222 L~G 224 (374)
T PF13281_consen 222 LLG 224 (374)
T ss_pred HHH
Confidence 443
No 247
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.47 E-value=9 Score=39.66 Aligned_cols=160 Identities=8% Similarity=-0.044 Sum_probs=82.6
Q ss_pred HHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHH
Q 003082 78 ASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKL 157 (850)
Q Consensus 78 ~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~ 157 (850)
+-.+....+++.|+....+.+..- .+ ..-.+..+++...+..++|.+++++..--..+.....-+. ....+++
T Consensus 13 g~~Ly~s~~~~~al~~w~~~L~~l--~~---~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~d--s~~~~ea 85 (518)
T KOG1941|consen 13 GLQLYQSNQTEKALQVWTKVLEKL--SD---LMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELED--SDFLLEA 85 (518)
T ss_pred HHhHhcCchHHHHHHHHHHHHHHH--HH---HHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 344556677777777666665541 11 1222455666666777888888776543222211111110 1122556
Q ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHhCC-CCC--CCcccHHHHHHHHHcCCChHHHHHHhhhC------CCCc----chH
Q 003082 158 LKNECQRLLDSGEVEMFVGLMEVLEEFR-LPV--KELDEEFRIVQLCVNKPDVNLAIRYACIV------PRAD----ILF 224 (850)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------p~~~----~~~ 224 (850)
++++...+-+.-++.+++.+-..-+... ..+ +.......++.++...+.++.++++|+.+ ..+. .++
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 6666665545555556665555443221 111 11223344566666666677777666553 1111 455
Q ss_pred HHHHHHHHhcCChHHHHHHH
Q 003082 225 CNFVREFGKKRDLVSALRAY 244 (850)
Q Consensus 225 ~~li~~~~~~g~~~~A~~~~ 244 (850)
..|...|.+..++++|.-+.
T Consensus 166 v~Lgslf~~l~D~~Kal~f~ 185 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFP 185 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhh
Confidence 66667777777766665443
No 248
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.44 E-value=12 Score=37.09 Aligned_cols=187 Identities=9% Similarity=0.035 Sum_probs=111.3
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...| .-+....+.|++++|...|+.+.... |.+... -......+-++-+.+++++|+...++-++ ..|....
T Consensus 35 ~~LY-~~g~~~L~~gn~~~A~~~fe~l~~~~--p~s~~~---~qa~l~l~yA~Yk~~~y~~A~~~~drFi~--lyP~~~n 106 (254)
T COG4105 35 SELY-NEGLTELQKGNYEEAIKYFEALDSRH--PFSPYS---EQAQLDLAYAYYKNGEYDLALAYIDRFIR--LYPTHPN 106 (254)
T ss_pred HHHH-HHHHHHHhcCCHHHHHHHHHHHHHcC--CCCccc---HHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCCCCC
Confidence 3444 44555678899999999999999773 332111 11122233355699999999999999884 4554421
Q ss_pred chhhhHHHHHHHHhhh-------hcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcch
Q 003082 151 DGSGFKLLKNECQRLL-------DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADIL 223 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~-------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~ 223 (850)
.-+-.++.....+. ++....+|+.-|+.+++.- |++........+. ..+. +..+
T Consensus 107 --~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~Ya~dA~~~i-----------~~~~----d~LA 167 (254)
T COG4105 107 --ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSRYAPDAKARI-----------VKLN----DALA 167 (254)
T ss_pred --hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCcchhhHHHHH-----------HHHH----HHHH
Confidence 12444554443331 2223345555566665543 5543333221111 0000 0011
Q ss_pred HH--HHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 224 FC--NFVREFGKKRDLVSALRAYDASKKHLSSPN---MYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 224 ~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
.. .+...|.+.|.+-.|..-|++|++. .+-+ ...+-.+..+|-..|-.++|...-.-+...
T Consensus 168 ~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 168 GHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 11 4678899999999999999999986 3222 235666777888888888887776665544
No 249
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.41 E-value=3.4 Score=41.69 Aligned_cols=117 Identities=9% Similarity=0.043 Sum_probs=67.6
Q ss_pred HhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCc--chHH---HHHHHHHhcCCh
Q 003082 163 QRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD--ILFC---NFVREFGKKRDL 237 (850)
Q Consensus 163 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~--~~~~---~li~~~~~~g~~ 237 (850)
..+...|++.+|...|....+.. +.+......++..|...|+.+.|..++..+|.+. ..+. .-|..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34445677777777776666554 4555555666667777777777777776666543 1111 223444444444
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 238 VSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 238 ~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
.+...+-.+.-.. | |...-..+...+...|+.++|++.+-.+.+
T Consensus 220 ~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 220 PEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444332 4 555666667777777777777776655544
No 250
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.34 E-value=6.5 Score=35.62 Aligned_cols=44 Identities=18% Similarity=0.171 Sum_probs=22.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003082 225 CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC 269 (850)
Q Consensus 225 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 269 (850)
..++..+...+........++.+...+. .+...++.++..|++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 3445555555555555555555554432 3444555555555443
No 251
>PRK11906 transcriptional regulator; Provisional
Probab=91.90 E-value=4.3 Score=43.91 Aligned_cols=93 Identities=11% Similarity=0.031 Sum_probs=48.3
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC---HHH
Q 003082 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN---IYV 293 (850)
Q Consensus 218 p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd---~~t 293 (850)
|.+..+...++.++.-.++++.|..+|++.... .|| ..+|......+.-+|+.++|.+.+++..+. .|. ...
T Consensus 335 ~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~ 410 (458)
T PRK11906 335 TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVV 410 (458)
T ss_pred CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHH
Confidence 444455555555556666677777777766653 233 223444444445567777777776664443 222 222
Q ss_pred HHHHHHhhc-CChHHHHHHHHH
Q 003082 294 FNSLMNVNA-HDLKFTLEVYKN 314 (850)
Q Consensus 294 ~~~ll~~~~-~~~~~a~~l~~~ 314 (850)
..-.+..|. ..++.|+++|-+
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 411 IKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHcCCchhhhHHHHhh
Confidence 222232333 356666666544
No 252
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=91.81 E-value=19 Score=37.84 Aligned_cols=280 Identities=14% Similarity=0.076 Sum_probs=161.5
Q ss_pred hcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCC-cccHHHHHHHHHc
Q 003082 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKE-LDEEFRIVQLCVN 203 (850)
Q Consensus 125 ~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 203 (850)
-.|+-..|..+-.+..+. +..|.. . +--++.+-. -.-.|++++|.+-|+.|+.. |.. ......+--.-.+
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqe---p-LIhlLeAQa-al~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr 166 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQE---P-LIHLLEAQA-ALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQR 166 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccch---H-HHHHHHHHH-HHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHh
Confidence 447777777766555421 111110 1 111222211 12358888888888888754 221 1111122222345
Q ss_pred CCChHHHHHHhh----hCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHH--HHHHHHHHHHh---cCCHH
Q 003082 204 KPDVNLAIRYAC----IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHL-SSPNMY--ICRTIIDVCGI---CGDYM 273 (850)
Q Consensus 204 ~~~~~~A~~~~~----~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--~~~~li~~~~~---~g~~~ 273 (850)
.|..+.|.+|.+ ..|.-......++...|..|+|+.|+++.+.-.... +.+++. .-..|+.+-.. ..+..
T Consensus 167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~ 246 (531)
T COG3898 167 LGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPA 246 (531)
T ss_pred cccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChH
Confidence 777777777654 457777788888999999999999999988765542 334443 23334332211 23455
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHh----hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003082 274 KSRAIYEDLRSQNVTLNIYVFNSLMNV----NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349 (850)
Q Consensus 274 ~A~~~~~~m~~~g~~pd~~t~~~ll~~----~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~ 349 (850)
.|...-.+..+. .||..- ..++.+ ..+++.++-.+++.+-+....|+.. ++-.+.+.|+ .+..-++.
T Consensus 247 ~Ar~~A~~a~KL--~pdlvP-aav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gd--ta~dRlkR 317 (531)
T COG3898 247 SARDDALEANKL--APDLVP-AAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGD--TALDRLKR 317 (531)
T ss_pred HHHHHHHHHhhc--CCccch-HHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCC--cHHHHHHH
Confidence 555555444432 444322 222222 3467888888999888876555532 2223445554 34444444
Q ss_pred HHHhhhcCCccc-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHc
Q 003082 350 VKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN-AGLVEQAMHLFEEMLQA 427 (850)
Q Consensus 350 m~~~~~~g~~~~-d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~-~g~~~~A~~l~~~m~~~ 427 (850)
.+++.+ ++| +..+--++..+-...|++..|..--+...+ ..|....|-.|.+.-.- .|+-+++...+.+..+.
T Consensus 318 a~~L~s---lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 318 AKKLES---LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHh---cCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 444321 334 455666677778888888888776666654 36778888888776544 48999999988888765
No 253
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.80 E-value=1.9 Score=45.33 Aligned_cols=93 Identities=11% Similarity=-0.011 Sum_probs=68.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhh
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~ 301 (850)
..+.+|.-.|.+.+++..|+...+..+..+. +|+-..-.-..+|...|+++.|+..|+.+.+. .|+...-+.=|..+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 5577889999999999999999999888643 67888778888999999999999999998875 66655444444333
Q ss_pred cC----ChHHHHHHHHHHHH
Q 003082 302 AH----DLKFTLEVYKNMQK 317 (850)
Q Consensus 302 ~~----~~~~a~~l~~~m~~ 317 (850)
.. ..+...++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 22 22334566666654
No 254
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.69 E-value=11 Score=35.02 Aligned_cols=134 Identities=12% Similarity=0.047 Sum_probs=76.2
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCC
Q 003082 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGV 320 (850)
Q Consensus 241 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~ 320 (850)
.+....+.+.+++|+...|..+++.+.+.|++.... ++...++-+|.......+-...+....+.++=-+|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkR-- 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKR-- 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHH--
Confidence 344556667788899999999999999999866544 44556667776665555544444333333333333221
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003082 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (850)
Q Consensus 321 ~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~ 390 (850)
=...+..++..+...|++-+|.++.+.... .+......++.+..+.++...-..+|+-..
T Consensus 88 --L~~~~~~iievLL~~g~vl~ALr~ar~~~~--------~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 88 --LGTAYEEIIEVLLSKGQVLEALRYARQYHK--------VDSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred --hhhhHHHHHHHHHhCCCHHHHHHHHHHcCC--------cccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 001244566667777777777777655321 122233445555555555444444444433
No 255
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=91.58 E-value=28 Score=39.36 Aligned_cols=53 Identities=13% Similarity=0.071 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChHH
Q 003082 584 VAYTTAIKVCVRSKRLKQAFSLFEEMKH-YQIQPNLVTYITLLRARSRYGSLHE 636 (850)
Q Consensus 584 ~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~li~a~~~~g~~~~ 636 (850)
..|-.|..-....|.++.|++.--.+.+ ..+-|-...|..|.-+-|....+.-
T Consensus 1022 yHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGt 1075 (1189)
T KOG2041|consen 1022 YHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGT 1075 (1189)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhh
Confidence 3444444455667888888876555554 3466777778777666555444433
No 256
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.39 E-value=0.42 Score=33.22 Aligned_cols=34 Identities=9% Similarity=0.132 Sum_probs=29.6
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhH
Q 003082 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKF 107 (850)
Q Consensus 72 ~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~ 107 (850)
..+..++..|...|++++|+++|+++++. .|+..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~ 35 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--DPDDP 35 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 46778999999999999999999999999 55543
No 257
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.31 E-value=17 Score=36.22 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=32.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTI---TWSSLINACANAGLVEQAMHLFEEMLQ 426 (850)
Q Consensus 369 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---ty~~li~~~~~~g~~~~A~~l~~~m~~ 426 (850)
+.+.|.+.|.+..|..-+++|++. ..-+.. ..-.+..+|-..|..++|.+.-.-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 344566667777777667766665 221222 344455666777777777666555443
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.19 E-value=5 Score=40.99 Aligned_cols=149 Identities=10% Similarity=-0.120 Sum_probs=80.4
Q ss_pred hhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHH----HH
Q 003082 124 IREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRI----VQ 199 (850)
Q Consensus 124 ~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l----~~ 199 (850)
.-.|+..+|...++++++. .|.+.. .....-.+|. ..|+.+.-...++++...- .++- -.+.++ .-
T Consensus 114 ~~~g~~h~a~~~wdklL~d--~PtDll---a~kfsh~a~f---y~G~~~~~k~ai~kIip~w-n~dl-p~~sYv~GmyaF 183 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD--YPTDLL---AVKFSHDAHF---YNGNQIGKKNAIEKIIPKW-NADL-PCYSYVHGMYAF 183 (491)
T ss_pred hccccccHHHHHHHHHHHh--Cchhhh---hhhhhhhHHH---hccchhhhhhHHHHhcccc-CCCC-cHHHHHHHHHHh
Confidence 3568888888888888743 444321 1111122221 3577777777777776541 1322 223322 12
Q ss_pred HHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HH--HHHHHHHHHhcCCH
Q 003082 200 LCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNM-YI--CRTIIDVCGICGDY 272 (850)
Q Consensus 200 ~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~--~~~li~~~~~~g~~ 272 (850)
.+.+.|-+++|++..+.. +.+..+..++...+.-.|++.++.++...-...=-.... .+ |=...-.+...+.+
T Consensus 184 gL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aey 263 (491)
T KOG2610|consen 184 GLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEY 263 (491)
T ss_pred hHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccch
Confidence 234677888887766553 344455566777788888888888765432211000011 11 11222235556888
Q ss_pred HHHHHHHHHH
Q 003082 273 MKSRAIYEDL 282 (850)
Q Consensus 273 ~~A~~~~~~m 282 (850)
+.|+++|+.=
T Consensus 264 e~aleIyD~e 273 (491)
T KOG2610|consen 264 EKALEIYDRE 273 (491)
T ss_pred hHHHHHHHHH
Confidence 8888888653
No 259
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=91.15 E-value=22 Score=37.37 Aligned_cols=284 Identities=12% Similarity=0.044 Sum_probs=181.7
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCCcccHHHH--HHHHHcCCChHHHHHHhhhCCCCcchHH----HHHHHHHhcCChHHHH
Q 003082 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRI--VQLCVNKPDVNLAIRYACIVPRADILFC----NFVREFGKKRDLVSAL 241 (850)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~~~p~~~~~~~----~li~~~~~~g~~~~A~ 241 (850)
.|+-..|.++-.+-.+. + ..+......+ .++-.-.|+++.|.+-|+-+-.++.+-. -|.-.-.+.|..+.|.
T Consensus 97 AGda~lARkmt~~~~~l-l-ssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 97 AGDASLARKMTARASKL-L-SSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred cCchHHHHHHHHHHHhh-h-hccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHH
Confidence 47777777766554321 1 1122222222 3444568999999999998866664432 2444445789999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCcCH--HHHHHHHHhhcC-----ChHHHHHHHH
Q 003082 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN-VTLNI--YVFNSLMNVNAH-----DLKFTLEVYK 313 (850)
Q Consensus 242 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~--~t~~~ll~~~~~-----~~~~a~~l~~ 313 (850)
+.-+.....- +.-.+.+...+...+..|+|+.|+++++.-+... +.+|. ..-..|+.+.+. +...|...-.
T Consensus 175 ~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~ 253 (531)
T COG3898 175 HYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL 253 (531)
T ss_pred HHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 8888776532 1245788999999999999999999999877643 34554 344566665442 4445555544
Q ss_pred HHHHcCCCCCHHHH-HHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH-
Q 003082 314 NMQKLGVMADMASY-NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS- 391 (850)
Q Consensus 314 ~m~~~g~~pd~~t~-~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~- 391 (850)
+-.+ +.||.+-- -.-..++.+.|++.++-.+++.+=+ ..|-...+.. ..+.+.|+. +++-++....
T Consensus 254 ~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK------~ePHP~ia~l--Y~~ar~gdt--a~dRlkRa~~L 321 (531)
T COG3898 254 EANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK------AEPHPDIALL--YVRARSGDT--ALDRLKRAKKL 321 (531)
T ss_pred HHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh------cCCChHHHHH--HHHhcCCCc--HHHHHHHHHHH
Confidence 4443 34554322 2335778899999999999998865 2344433332 234556653 2222222211
Q ss_pred CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHhhccccccc
Q 003082 392 AGVTP-NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE-ACQFDRAFRLFRSWTLSKTQVAL 468 (850)
Q Consensus 392 ~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~A~~l~~~m~~~~~~~~~ 468 (850)
..++| |..+--.+..+-...|++..|..--+.... ..|....|-.|.+.-.. .|+-.++...+.+-......+.+
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW 398 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAW 398 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcc
Confidence 11233 466777788888889999888776666654 47788888777776544 49999999999887776655554
No 260
>PRK11906 transcriptional regulator; Provisional
Probab=91.11 E-value=8.4 Score=41.76 Aligned_cols=58 Identities=10% Similarity=0.019 Sum_probs=27.3
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYE 280 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 280 (850)
.+|+...-...-.|+.++|.+.+++..+..+.. -.......++.|+.. .+++|+.+|-
T Consensus 373 ~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 373 SLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHh
Confidence 444444445555666666666666655432211 112222333344433 3555655554
No 261
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.93 E-value=2.7 Score=36.57 Aligned_cols=87 Identities=11% Similarity=-0.036 Sum_probs=70.6
Q ss_pred hhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCc----chHHHHHHHHHhcC
Q 003082 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRAD----ILFCNFVREFGKKR 235 (850)
Q Consensus 164 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~----~~~~~li~~~~~~g 235 (850)
.+++.|+.+.|++.|.+.+..- |..+..|++-.+++--+|+.++|+.-++.. .+.. .+|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 4567899999999999987654 778888999999999999999998866553 2222 45666788899999
Q ss_pred ChHHHHHHHHHHHhCCC
Q 003082 236 DLVSALRAYDASKKHLS 252 (850)
Q Consensus 236 ~~~~A~~~~~~m~~~g~ 252 (850)
+-+.|..=|+...+.|.
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 99999999998887763
No 262
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.90 E-value=28 Score=42.12 Aligned_cols=156 Identities=16% Similarity=0.073 Sum_probs=72.0
Q ss_pred CChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 205 PDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 205 ~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
+++..|+.....+. ...|...++.--+.|-|.+|+.+|..=.+ .-...|.+-.+.+...+.+++|.-+|+..-+
T Consensus 894 ~ry~~AL~hLs~~~--~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e----~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk 967 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG--ETYFPECKNYIKKHGLYDEALALYKPDSE----KQKVIYEAYADHLREELMSDEAALMYERCGK 967 (1265)
T ss_pred HHHHHHHHHHHHcC--ccccHHHHHHHHhcccchhhhheeccCHH----HHHHHHHHHHHHHHHhccccHHHHHHHHhcc
Confidence 45555655544433 12344445555566666777665431110 1112333333334444555555555543221
Q ss_pred CCCCcCHHHHHHHHHh-hcCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCccc
Q 003082 285 QNVTLNIYVFNSLMNV-NAHDLKFTLEVYKNMQKLGVMADMAS--YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361 (850)
Q Consensus 285 ~g~~pd~~t~~~ll~~-~~~~~~~a~~l~~~m~~~g~~pd~~t--~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~ 361 (850)
. =-++-.. .++++++|+.+..+|.. ..|... --.|+.-+...++.-+|-++..+..+ .
T Consensus 968 l--------ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s-------d- 1028 (1265)
T KOG1920|consen 968 L--------EKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLS-------D- 1028 (1265)
T ss_pred H--------HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc-------C-
Confidence 0 0000000 23455555555555532 112221 13456666666776666666655432 1
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003082 362 DVFTYSTIVKVFADAKWWQMALKVKEDM 389 (850)
Q Consensus 362 d~~ty~~li~~~~~~g~~~~A~~l~~~m 389 (850)
+.-.+..||+...|++|.++...-
T Consensus 1029 ----~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1029 ----PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred ----HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 223344566666677776665543
No 263
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.57 E-value=0.45 Score=33.08 Aligned_cols=39 Identities=5% Similarity=-0.062 Sum_probs=29.2
Q ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHH
Q 003082 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIV 198 (850)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 198 (850)
+..++..|...|++++|+++|+++++.. |++...+..++
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~--P~~~~a~~~La 42 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALD--PDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCCHHHHHHhh
Confidence 4455667778899999999999988865 77766665543
No 264
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.03 E-value=18 Score=34.89 Aligned_cols=176 Identities=13% Similarity=0.015 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh-hcCChHHHHHHHHH
Q 003082 237 LVSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-NAHDLKFTLEVYKN 314 (850)
Q Consensus 237 ~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~-~~~~~~~a~~l~~~ 314 (850)
+.-|+-=|.+.+. +.|+ ..+||-|.-.+...|+++.|.+.|+...+....-+-...|.-|+. +.|++..|.+-|-.
T Consensus 81 ~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~ 158 (297)
T COG4785 81 RALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLA 158 (297)
T ss_pred HHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHH
Confidence 3334444444433 3454 457899988899999999999999999987655555566666665 56799988877766
Q ss_pred HHHcC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003082 315 MQKLG-VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (850)
Q Consensus 315 m~~~g-~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 393 (850)
.-+.. -.|=...|--|+ ...-+..+|..-+.+-.+ ..|..-|...|-.|.-..-- ...+++.....
T Consensus 159 fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~-------~~d~e~WG~~iV~~yLgkiS--~e~l~~~~~a~- 225 (297)
T COG4785 159 FYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE-------KSDKEQWGWNIVEFYLGKIS--EETLMERLKAD- 225 (297)
T ss_pred HHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH-------hccHhhhhHHHHHHHHhhcc--HHHHHHHHHhh-
Confidence 65443 122222332222 233455666554433221 23444454444333221111 11222222211
Q ss_pred CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003082 394 VTP-------NTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (850)
Q Consensus 394 ~~p-------~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 427 (850)
-.- =..||--|..-+...|+.++|..+|+-.+..
T Consensus 226 a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 226 ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 111 1346777778888889999999999887654
No 265
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=89.96 E-value=6.1 Score=43.56 Aligned_cols=155 Identities=18% Similarity=0.166 Sum_probs=80.2
Q ss_pred HHHHhcCChHHHHHHHH--HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChH
Q 003082 229 REFGKKRDLVSALRAYD--ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLK 306 (850)
Q Consensus 229 ~~~~~~g~~~~A~~~~~--~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~ 306 (850)
+...-.++++++.++.. ++.. .-+..-.+.++..+-+.|..+.|+++-.+-..+ | =|....|+++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~---~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r--------F--eLAl~lg~L~ 335 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP---NIPKDQGQSIARFLEKKGYPELALQFVTDPDHR--------F--ELALQLGNLD 335 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG---G--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH--------H--HHHHHCT-HH
T ss_pred HHHHHcCChhhhhhhhhhhhhcc---cCChhHHHHHHHHHHHCCCHHHHHhhcCChHHH--------h--HHHHhcCCHH
Confidence 34445678888776664 2221 112455788888888889998888886542211 1 1122345555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHH
Q 003082 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386 (850)
Q Consensus 307 ~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~ 386 (850)
.|.++-++ ..+...|..|.+...+.|+++.|++.|.+... |..|+-.|.-.|+.+.-.++.
T Consensus 336 ~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-------------~~~L~lLy~~~g~~~~L~kl~ 396 (443)
T PF04053_consen 336 IALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD-------------FSGLLLLYSSTGDREKLSKLA 396 (443)
T ss_dssp HHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT--------------HHHHHHHHHHCT-HHHHHHHH
T ss_pred HHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-------------ccccHHHHHHhCCHHHHHHHH
Confidence 55544322 23566777777777777777777777665332 455555566666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003082 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421 (850)
Q Consensus 387 ~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 421 (850)
+.....|- ++....++.-.|++++..+++
T Consensus 397 ~~a~~~~~------~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 397 KIAEERGD------INIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHccC------HHHHHHHHHHcCCHHHHHHHH
Confidence 55554442 444444444555555555544
No 266
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=89.95 E-value=20 Score=34.86 Aligned_cols=197 Identities=16% Similarity=0.054 Sum_probs=88.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc-CHHHHHHH-HHh
Q 003082 224 FCNFVREFGKKRDLVSALRAYDASKKH-LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL-NIYVFNSL-MNV 300 (850)
Q Consensus 224 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~l-l~~ 300 (850)
+......+...+++..+...+...... ........+..+...+...+++..+...+.........+ ....+... +..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALY 141 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence 334455555555566555555555431 122333445555555555555666666666555432222 11222222 222
Q ss_pred hcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCccc-CHhHHHHHHHHHHhcC
Q 003082 301 NAHDLKFTLEVYKNMQKLGV--MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAK 377 (850)
Q Consensus 301 ~~~~~~~a~~l~~~m~~~g~--~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~-d~~ty~~li~~~~~~g 377 (850)
..++.+.+...|.+...... ......+......+...++.+.|...+...... ... ....+..+-..+...+
T Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 142 ELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL-----NPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh-----CcccchHHHHHhhHHHHHcc
Confidence 33444444444444433110 012222223333344555666666666655542 111 2344555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (850)
Q Consensus 378 ~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 426 (850)
+++.+...+......... ....+..+...+...+..+.+...+.....
T Consensus 217 ~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 217 KYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555666555555543211 122233333333344455555555555544
No 267
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.55 E-value=2.8 Score=39.80 Aligned_cols=63 Identities=25% Similarity=0.440 Sum_probs=51.9
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
..+..++..|++.|+.+.|++.|.++.+....+ -...+-.+|......+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 567789999999999999999999998875444 344678888999999999999888877654
No 268
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=89.51 E-value=33 Score=36.70 Aligned_cols=109 Identities=13% Similarity=0.067 Sum_probs=64.4
Q ss_pred CchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCC
Q 003082 127 GRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPD 206 (850)
Q Consensus 127 g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (850)
|..++..+.+.++...=-.|.... -+++++....|-+..+|+.-+++.+.+.... +...
T Consensus 117 g~~~~l~~~L~~i~~rLd~~~~ls----~div~~lllSyRdiqdydamI~Lve~l~~~p---~~~~-------------- 175 (374)
T PF13281_consen 117 GARKELAKELRRIRQRLDDPELLS----PDIVINLLLSYRDIQDYDAMIKLVETLEALP---TCDV-------------- 175 (374)
T ss_pred hHHHHHHHHHHHHHHhhCCHhhcC----hhHHHHHHHHhhhhhhHHHHHHHHHHhhccC---ccch--------------
Confidence 333444555555543211233222 4556666677888899999999999886531 1100
Q ss_pred hHHHHHHhhhCCCCcchHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003082 207 VNLAIRYACIVPRADILFCNFVREFGK---KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCG 267 (850)
Q Consensus 207 ~~~A~~~~~~~p~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 267 (850)
+....+-...+-++-+ .|+.++|++++..+......++..+|..+...|-
T Consensus 176 -----------~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyK 228 (374)
T PF13281_consen 176 -----------ANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYK 228 (374)
T ss_pred -----------hcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 0111222233445555 7889999999988666556677778887777664
No 269
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.39 E-value=4 Score=38.48 Aligned_cols=96 Identities=15% Similarity=0.044 Sum_probs=46.8
Q ss_pred HHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHH
Q 003082 78 ASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKL 157 (850)
Q Consensus 78 ~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~ 157 (850)
.+.+-+.|.|++|..-|..++...+ ..+.-.. -.++.+-..++++.++++.|+.-..+++ .+.|.. ..+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp--~~~~e~r-sIly~Nraaa~iKl~k~e~aI~dcsKai--el~pty------~kA 170 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCP--STSTEER-SILYSNRAAALIKLRKWESAIEDCSKAI--ELNPTY------EKA 170 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCc--cccHHHH-HHHHhhhHHHHHHhhhHHHHHHHHHhhH--hcCchh------HHH
Confidence 3345555666666666666666532 2211111 1222333344556666666666666555 333431 223
Q ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHhC
Q 003082 158 LKNECQRLLDSGEVEMFVGLMEVLEEF 184 (850)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~ 184 (850)
+...+..|-+...+++|++=|.++++.
T Consensus 171 l~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 171 LERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 333344455555666666666665543
No 270
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.21 E-value=47 Score=38.16 Aligned_cols=24 Identities=13% Similarity=0.153 Sum_probs=12.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHH
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYD 245 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~ 245 (850)
..|..+..---..|+++-|..+.+
T Consensus 508 iSy~~iA~~Ay~~GR~~LA~kLle 531 (829)
T KOG2280|consen 508 ISYAAIARRAYQEGRFELARKLLE 531 (829)
T ss_pred eeHHHHHHHHHhcCcHHHHHHHHh
Confidence 445555555555555555555444
No 271
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.18 E-value=4.5 Score=38.40 Aligned_cols=104 Identities=17% Similarity=0.029 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
-..+..++..|++.|+++.|++.|.++......+.+. +.++-+++......|++..+...+.++...--.+.+..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~-----id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~ 110 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHK-----IDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWE 110 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHH-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHH
Confidence 5778899999999999999999999988876555432 45566777777889999999999888875422222111
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVL 181 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~ 181 (850)
...-+..+ .+..+..++++.+|.+.|-..
T Consensus 111 ~~nrlk~~--~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 111 RRNRLKVY--EGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHH--HHHHHHHhchHHHHHHHHHcc
Confidence 00001111 122234567777777776544
No 272
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.99 E-value=0.79 Score=30.19 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 003082 224 FCNFVREFGKKRDLVSALRAYDASK 248 (850)
Q Consensus 224 ~~~li~~~~~~g~~~~A~~~~~~m~ 248 (850)
+..|...|.+.|++++|+.+|++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666643
No 273
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.97 E-value=16 Score=39.91 Aligned_cols=60 Identities=15% Similarity=0.158 Sum_probs=48.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 225 CNFVREFGKKRDLVSALRAYDASKKHLSS-PNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 225 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
..|.....+.|+.++|++.|.+|.+.... .+..+...|+.++...+.+.++..++.+..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 35777788899999999999999875432 2445788899999999999999999988653
No 274
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.97 E-value=0.31 Score=31.68 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=28.3
Q ss_pred hhccccCCcchhhHHHHHHHHHhhcCChHHHHH
Q 003082 60 LSTVRRDLSSRNDYYADMASKLAKDGRLEEFAM 92 (850)
Q Consensus 60 l~~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~ 92 (850)
.+++..+|+. ..+|..++..|...|++++|++
T Consensus 3 ~kAie~~P~n-~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 3 KKAIELNPNN-AEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred HHHHHHCCCC-HHHHHHHHHHHHHCcCHHhhcC
Confidence 3577889998 9999999999999999999963
No 275
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.79 E-value=0.57 Score=30.88 Aligned_cols=28 Identities=11% Similarity=0.126 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 003082 73 YYADMASKLAKDGRLEEFAMIVESVVVS 100 (850)
Q Consensus 73 ~~~~l~~~l~~~g~~~~A~~l~~~~~~~ 100 (850)
++..|+..+.+.|++++|+.+|++.+..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4678999999999999999999997754
No 276
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.40 E-value=31 Score=35.08 Aligned_cols=149 Identities=9% Similarity=-0.073 Sum_probs=92.4
Q ss_pred HHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003082 196 RIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD 271 (850)
Q Consensus 196 ~l~~~~~~~~~~~~A~~~~~~----~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 271 (850)
.-+......|++.+|...|.. .|.+..+...++..|...|+.+.|..+++.+...-..........-|..+.+...
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 344556677888888887755 4777778888999999999999999999987654222222222234455555555
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChHHHH
Q 003082 272 YMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLG-VMADMASYNILLKACCLAGNTVLAQ 344 (850)
Q Consensus 272 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g-~~pd~~t~~~Ll~~~~~~g~~~~A~ 344 (850)
..+...+-......--.++...--.......|+.+.|++.+-.+.+.. ---|...-..|+..+.-.|..+.+.
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLV 292 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHH
Confidence 555555555544431112223333333345688998887766665432 2346667778888888878555443
No 277
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=88.26 E-value=19 Score=32.47 Aligned_cols=23 Identities=4% Similarity=-0.003 Sum_probs=12.1
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHh
Q 003082 438 ILLQACVEACQFDRAFRLFRSWT 460 (850)
Q Consensus 438 ~ll~~~~~~g~~~~A~~l~~~m~ 460 (850)
.++..+.+.+.......+++.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~ 34 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESAL 34 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 34445555555555555555543
No 278
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.18 E-value=5.2 Score=40.63 Aligned_cols=78 Identities=18% Similarity=0.187 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 003082 549 ISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH-----YQIQPNLVTYIT 623 (850)
Q Consensus 549 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ 623 (850)
.++..++..+..+|+.+.+...++++.... +-|...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 356677888888888888888888887753 34777888888888888888888888887754 677777776666
Q ss_pred HHHH
Q 003082 624 LLRA 627 (850)
Q Consensus 624 li~a 627 (850)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 6655
No 279
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.01 E-value=12 Score=34.29 Aligned_cols=63 Identities=19% Similarity=0.098 Sum_probs=44.2
Q ss_pred HHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCC
Q 003082 115 MVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (850)
Q Consensus 115 ~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (850)
.+...++..+..++.+++..++.-+. -+.|... ++-+.....+...|+|.+|+.+|+.+....
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALr--vLRP~~~------e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALR--VLRPEFP------ELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHH--HhCCCch------HHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 34445555668889999999998888 6688653 222222344567899999999999987654
No 280
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.86 E-value=29 Score=33.98 Aligned_cols=61 Identities=13% Similarity=0.210 Sum_probs=31.3
Q ss_pred HHHHHHhc-CChHHHHHHHHHHHhC--CCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 003082 227 FVREFGKK-RDLVSALRAYDASKKH--LSSPNMY---ICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287 (850)
Q Consensus 227 li~~~~~~-g~~~~A~~~~~~m~~~--g~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 287 (850)
+...|... .+++.|+..|+..-+. |-+.+.. .+--+...-+..+++.+|+.+|+++....+
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455444 5566666666655442 1111111 122233334455777778888777766543
No 281
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.58 E-value=15 Score=33.16 Aligned_cols=62 Identities=13% Similarity=0.049 Sum_probs=42.3
Q ss_pred HHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCC
Q 003082 116 VASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (850)
Q Consensus 116 ~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (850)
+...++..+..++.+++..+++-+. -+.|+... ..+++.++ +...|+|++|+++|+.+...+
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALr--vLrP~~~e-~d~~dg~l-----~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALR--VLRPNLKE-LDMFDGWL-----LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH--HhCCCccc-cchhHHHH-----HHHcCCHHHHHHHHHhhhccC
Confidence 3344445556889999999998888 66786532 22233333 456799999999999887654
No 282
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=87.47 E-value=20 Score=31.67 Aligned_cols=134 Identities=13% Similarity=0.147 Sum_probs=74.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhH---HHHHHHHHHhcCC
Q 003082 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT---YSTIVKVFADAKW 378 (850)
Q Consensus 302 ~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~t---y~~li~~~~~~g~ 378 (850)
.|..++..++..+.... .+..-||.+|--....-+-+-..+.++.+-+. .|... .-.++..|+..|.
T Consensus 15 dG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki-------FDis~C~NlKrVi~C~~~~n~ 84 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI-------FDISKCGNLKRVIECYAKRNK 84 (161)
T ss_dssp TT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG-------S-GGG-S-THHHHHHHHHTT-
T ss_pred hchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh-------cCchhhcchHHHHHHHHHhcc
Confidence 36777777777777663 25555555554444444444444444444321 23221 1223333333332
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003082 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (850)
Q Consensus 379 ~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~ 458 (850)
+...+..-++.+.++|+-|+-.+++.++.+.+ .+++...-.+..+|.+.|+..++.+++++
T Consensus 85 ------------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 85 ------------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp --------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred ------------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 34445566777888888888888888887543 67777788888888899999999888888
Q ss_pred Hhhccc
Q 003082 459 WTLSKT 464 (850)
Q Consensus 459 m~~~~~ 464 (850)
..+.|.
T Consensus 146 ACekG~ 151 (161)
T PF09205_consen 146 ACEKGL 151 (161)
T ss_dssp HHHTT-
T ss_pred HHHhch
Confidence 877764
No 283
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.35 E-value=25 Score=32.78 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=23.5
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 003082 419 HLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456 (850)
Q Consensus 419 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~ 456 (850)
+.++-+.+.++.|+...|..+++.+.+.|++..-..++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll 52 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL 52 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34444555666677777777777777777666555444
No 284
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.14 E-value=5.3 Score=40.57 Aligned_cols=76 Identities=4% Similarity=-0.056 Sum_probs=62.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCcCHHHHHH
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS-----QNVTLNIYVFNS 296 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~t~~~ 296 (850)
.++..++..+...|+++.+...++++....+ -+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 4566789999999999999999999998642 5888999999999999999999999999875 366665555444
Q ss_pred HH
Q 003082 297 LM 298 (850)
Q Consensus 297 ll 298 (850)
..
T Consensus 233 y~ 234 (280)
T COG3629 233 YE 234 (280)
T ss_pred HH
Confidence 43
No 285
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.01 E-value=11 Score=34.15 Aligned_cols=63 Identities=13% Similarity=-0.004 Sum_probs=39.3
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCC
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR 219 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~ 219 (850)
.+.++.+...-...++.+++..+++.|.-.. |+.......-+..+...|++.+|+++|+.+..
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 3344444444445788899999999887655 66655555455555666666666666655543
No 286
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.52 E-value=5.2 Score=44.14 Aligned_cols=151 Identities=11% Similarity=0.025 Sum_probs=95.1
Q ss_pred HhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHH
Q 003082 81 LAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKN 160 (850)
Q Consensus 81 l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~ 160 (850)
+...|+++.|-.++..+.+. .. .+++.-+-++|-.++|+++ ...|+.. +++.+
T Consensus 596 ~vmrrd~~~a~~vLp~I~k~--~r------------t~va~Fle~~g~~e~AL~~-------s~D~d~r-----Felal- 648 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIPKE--IR------------TKVAHFLESQGMKEQALEL-------STDPDQR-----FELAL- 648 (794)
T ss_pred HhhhccccccccccccCchh--hh------------hhHHhHhhhccchHhhhhc-------CCChhhh-----hhhhh-
Confidence 45567777777765555432 11 1111122256666666654 3344332 34333
Q ss_pred HHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHH
Q 003082 161 ECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSA 240 (850)
Q Consensus 161 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A 240 (850)
+.|+++.|.++..+. ++..-|..|+.+....+++..|.+.|.... -|..|+-.+...|+-+..
T Consensus 649 ------~lgrl~iA~~la~e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~----d~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 649 ------KLGRLDIAFDLAVEA-------NSEVKWRQLGDAALSAGELPLASECFLRAR----DLGSLLLLYTSSGNAEGL 711 (794)
T ss_pred ------hcCcHHHHHHHHHhh-------cchHHHHHHHHHHhhcccchhHHHHHHhhc----chhhhhhhhhhcCChhHH
Confidence 569999998877643 334558899999999999999999887653 356777778888887655
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003082 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281 (850)
Q Consensus 241 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 281 (850)
..+=....+.|. . |.-.-+|...|+++++++++..
T Consensus 712 ~~la~~~~~~g~-~-----N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 712 AVLASLAKKQGK-N-----NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHhhcc-c-----chHHHHHHHcCCHHHHHHHHHh
Confidence 555555555443 2 2233456678999999888765
No 287
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.48 E-value=12 Score=36.75 Aligned_cols=58 Identities=19% Similarity=0.067 Sum_probs=38.5
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHh
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYA 214 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 214 (850)
..++++.|..+...|++-++++--..++... |.+..+++.-+++....=+.++|..-|
T Consensus 230 tpLllNy~QC~L~~~e~yevleh~seiL~~~--~~nvKA~frRakAhaa~Wn~~eA~~D~ 287 (329)
T KOG0545|consen 230 TPLLLNYCQCLLKKEEYYEVLEHCSEILRHH--PGNVKAYFRRAKAHAAVWNEAEAKADL 287 (329)
T ss_pred hHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 3467778888888899988888888887655 666555555555555444444444433
No 288
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=86.34 E-value=48 Score=35.39 Aligned_cols=65 Identities=15% Similarity=0.118 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 547 NHISWTILIDACGGSGNVEGALQILKIMREDGMSP---DVVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (850)
Q Consensus 547 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 611 (850)
...+|..+...+.+.|+++.|...+.++...+... +....-.-.+.+...|+..+|+..+++...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45578889999999999999999999988743211 334444556777888999999999988876
No 289
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.32 E-value=34 Score=34.07 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=40.7
Q ss_pred cCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHH
Q 003082 84 DGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (850)
Q Consensus 84 ~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~ 141 (850)
....++|+.-|+..++..++-..|. +..+...+..+.+.|++++-.+.|.+++.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWG----FKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWG----FKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhH----HHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3578999999999998854443333 34455667778899999999999988873
No 290
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=86.32 E-value=52 Score=35.42 Aligned_cols=129 Identities=16% Similarity=0.231 Sum_probs=93.0
Q ss_pred CHHHHHHHHHHHhc--cHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH-HHH
Q 003082 514 TTTTYNILMKACCT--DYYRVKALMNEMRTVG-LSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAY-TTA 589 (850)
Q Consensus 514 ~~~t~~~li~~~~~--~~~~a~~l~~~m~~~g-~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty-~~l 589 (850)
-+..|...|++-.+ .++.|..+|-+..+.| +.+++.+++++|..+|. |+...|..+|+-=... -||...| +-.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHH
Confidence 34556666666543 4688999999999988 66889999999998775 6777888888765442 4555544 456
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 003082 590 IKVCVRSKRLKQAFSLFEEMKHYQIQPN--LVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649 (850)
Q Consensus 590 i~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~ 649 (850)
+.-+...++-..|..+|+...+. +.-+ ...|..+|.-=+..|++.. +..+=+.|..
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~---v~sLe~rf~e 530 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNN---VYSLEERFRE 530 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHH---HHhHHHHHHH
Confidence 67777889999999999965542 2223 5789999999899999876 4444444543
No 291
>COG2840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.04 E-value=1.4 Score=41.28 Aligned_cols=57 Identities=25% Similarity=0.371 Sum_probs=45.3
Q ss_pred HHHhhccchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEecCCcccccCcccchHHHHHHHHHhhh
Q 003082 713 AIDLRGLTKVEARIIVLAVLRMMKENYSLGVPVKDDLMIVLGPNKVNKIQAKHDLEVKDAITKLLQD 779 (850)
Q Consensus 713 ~~~l~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~i~~g~gk~s~~~g~~~~~v~~~v~~~l~~ 779 (850)
.+|||||+..+|+.++.+++..-... + -..+.||+|-|. |+-.. +.||..|-.-|..
T Consensus 98 ~LDLHG~tq~eAr~~L~~Fi~~a~~~---~---~rcv~VihGkG~-s~g~~---~vLK~~Vp~WL~q 154 (184)
T COG2840 98 RLDLHGLTQEEARQELGAFIARARAE---G---LRCVLVIHGKGR-SKGSK---PVLKSQVPRWLTQ 154 (184)
T ss_pred eeeccCCCHHHHHHHHHHHHHHHHHh---C---CcEEEEEeCCCc-CCCCc---hhHHHHHHHHHHh
Confidence 68999999999999988877555443 2 235889999999 65433 7899999999988
No 292
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.65 E-value=2.3 Score=27.33 Aligned_cols=29 Identities=14% Similarity=0.150 Sum_probs=26.0
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 003082 72 DYYADMASKLAKDGRLEEFAMIVESVVVS 100 (850)
Q Consensus 72 ~~~~~l~~~l~~~g~~~~A~~l~~~~~~~ 100 (850)
..|..++..+...|++++|+..|+++++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 56788999999999999999999999988
No 293
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.37 E-value=91 Score=36.51 Aligned_cols=156 Identities=15% Similarity=0.075 Sum_probs=102.8
Q ss_pred ccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcC
Q 003082 64 RRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG 143 (850)
Q Consensus 64 ~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~ 143 (850)
..+++.........+..|-+.|++++|...|-+.+.. .+|. .++.-|+...+..+-...++.+.+.|
T Consensus 361 ~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s------------~Vi~kfLdaq~IknLt~YLe~L~~~g 427 (933)
T KOG2114|consen 361 HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS------------EVIKKFLDAQRIKNLTSYLEALHKKG 427 (933)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH------------HHHHHhcCHHHHHHHHHHHHHHHHcc
Confidence 5566666777888888899999999999998877654 2443 23445667788888888888888888
Q ss_pred CCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcch
Q 003082 144 VAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADIL 223 (850)
Q Consensus 144 ~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~ 223 (850)
+.-.+. ..+++++ |.+.++.+.-.++.+... .| .-.......+..|.+.+-.++|..+..++...+.+
T Consensus 428 la~~dh-----ttlLLnc---YiKlkd~~kL~efI~~~~-~g---~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~v 495 (933)
T KOG2114|consen 428 LANSDH-----TTLLLNC---YIKLKDVEKLTEFISKCD-KG---EWFFDVETALEILRKSNYLDEAELLATKFKKHEWV 495 (933)
T ss_pred cccchh-----HHHHHHH---HHHhcchHHHHHHHhcCC-Cc---ceeeeHHHHHHHHHHhChHHHHHHHHHHhccCHHH
Confidence 766553 2334433 456677776555554332 11 11223456677777777888888777766654443
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 003082 224 FCNFVREFGKKRDLVSALRAYDAS 247 (850)
Q Consensus 224 ~~~li~~~~~~g~~~~A~~~~~~m 247 (850)
.. ..+...|++++|++.+..+
T Consensus 496 l~---ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 496 LD---ILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HH---HHHHHhcCHHHHHHHHhcC
Confidence 33 3345668888888887654
No 294
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=84.33 E-value=2.1 Score=27.30 Aligned_cols=29 Identities=14% Similarity=0.094 Sum_probs=25.5
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 003082 72 DYYADMASKLAKDGRLEEFAMIVESVVVS 100 (850)
Q Consensus 72 ~~~~~l~~~l~~~g~~~~A~~l~~~~~~~ 100 (850)
..+..++..+...|++++|+..|+++++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46778899999999999999999999988
No 295
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=84.20 E-value=12 Score=32.83 Aligned_cols=83 Identities=10% Similarity=0.034 Sum_probs=55.9
Q ss_pred CChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 205 PDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 205 ~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
|+....+..+.............+..+..+|+-++-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.+.-+
T Consensus 70 ~NlKrVi~C~~~~n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 70 GNLKRVIECYAKRNKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp S-THHHHHHHHHTT---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHhcchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 4444444444444444455556688889999999999999998753 347788888999999999999999999999988
Q ss_pred CCCC
Q 003082 285 QNVT 288 (850)
Q Consensus 285 ~g~~ 288 (850)
.|++
T Consensus 149 kG~k 152 (161)
T PF09205_consen 149 KGLK 152 (161)
T ss_dssp TT-H
T ss_pred hchH
Confidence 8863
No 296
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.75 E-value=42 Score=34.65 Aligned_cols=147 Identities=10% Similarity=0.074 Sum_probs=79.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHH----HHHHHhcCCH
Q 003082 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI----VKVFADAKWW 379 (850)
Q Consensus 304 ~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~l----i~~~~~~g~~ 379 (850)
+..+|-..++++++. .+.|...++--=++|.-.|+.+.-...++++... ..+|...|..+ .-++...|-+
T Consensus 118 ~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-----wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 118 KHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-----WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred cccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-----cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 444444455555442 3556666666666677777766666666665532 23444333332 2234466777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHhCCHHHHHHH
Q 003082 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN----SQCCNILLQACVEACQFDRAFRL 455 (850)
Q Consensus 380 ~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~A~~l 455 (850)
++|.+.-++..+.+ +-|.-.-.++...+--.|++.++.++..+-... ...+ ..-|=-..-.+...+.++.|+++
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 77777777766554 225556666666677777777777766543321 1100 00111111123455778888888
Q ss_pred HHH
Q 003082 456 FRS 458 (850)
Q Consensus 456 ~~~ 458 (850)
|+.
T Consensus 270 yD~ 272 (491)
T KOG2610|consen 270 YDR 272 (491)
T ss_pred HHH
Confidence 764
No 297
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=83.55 E-value=1e+02 Score=36.45 Aligned_cols=193 Identities=10% Similarity=0.007 Sum_probs=109.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCcC-------HHHHHHHH---HhhcCChHHHHHHHHHHHH----cCCCCCHHHHHHHH
Q 003082 266 CGICGDYMKSRAIYEDLRSQNVTLN-------IYVFNSLM---NVNAHDLKFTLEVYKNMQK----LGVMADMASYNILL 331 (850)
Q Consensus 266 ~~~~g~~~~A~~~~~~m~~~g~~pd-------~~t~~~ll---~~~~~~~~~a~~l~~~m~~----~g~~pd~~t~~~Ll 331 (850)
.....++++|..+..++...-..|+ ...|+.|- ..+.++++.+.++-+.... .-..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 3456899999999988765322222 12344443 3466788888777666544 22345667777788
Q ss_pred HHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHH-----HHHHhcCC--HHHHHHHHHHHHHCC--C----CCCH
Q 003082 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV-----KVFADAKW--WQMALKVKEDMLSAG--V----TPNT 398 (850)
Q Consensus 332 ~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li-----~~~~~~g~--~~~A~~l~~~m~~~g--~----~p~~ 398 (850)
.+..-.|++++|..+..+..++... .+...|.... ..+...|. +.+.+..|....... - .+-.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~----~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~ 580 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQ----HDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLV 580 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHH
Confidence 8888899999999998887775422 3443333322 22445663 344444444443221 0 1223
Q ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHhCCHHHHHHHHHHHhhc
Q 003082 399 ITWSSLINACANA-GLVEQAMHLFEEMLQAGCEPNSQCCN--ILLQACVEACQFDRAFRLFRSWTLS 462 (850)
Q Consensus 399 ~ty~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~A~~l~~~m~~~ 462 (850)
.++..+..++.+. +...++..-++........|-...+. .|+..+...|++++|...+.++...
T Consensus 581 ~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 581 RIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4555555555552 12222222233222222223223333 6777888899999999999888654
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.34 E-value=22 Score=32.75 Aligned_cols=36 Identities=17% Similarity=0.102 Sum_probs=24.2
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcc
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELD 192 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 192 (850)
.+.++.+...-...++.+++..++..+.-.. |....
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLR--P~~~e 45 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLR--PEFPE 45 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhC--CCchH
Confidence 4555555555556788899999988887654 55433
No 299
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.28 E-value=35 Score=32.48 Aligned_cols=91 Identities=9% Similarity=0.010 Sum_probs=44.5
Q ss_pred HHHhhhhcCcHHHHHHHHHHHHhCCCCC-CCcccHHHHHHHHHcCCChHHHHHHhhhCCCCc---chHHHHHHHHHhcCC
Q 003082 161 ECQRLLDSGEVEMFVGLMEVLEEFRLPV-KELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD---ILFCNFVREFGKKRD 236 (850)
Q Consensus 161 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~---~~~~~li~~~~~~g~ 236 (850)
++..+.+.+++++|+.-++..+.....- -....-..+++.....|.+++|+..++...... .....-++.+...|+
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~ 174 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCc
Confidence 3444445555555555554444322000 001111234444444555555555444432221 122234677888888
Q ss_pred hHHHHHHHHHHHhCC
Q 003082 237 LVSALRAYDASKKHL 251 (850)
Q Consensus 237 ~~~A~~~~~~m~~~g 251 (850)
-++|+.-|+..++.+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 888888888877764
No 300
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=81.97 E-value=1.6 Score=28.28 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=13.6
Q ss_pred CCCcchHHHHHHHHHhcCChHHHH
Q 003082 218 PRADILFCNFVREFGKKRDLVSAL 241 (850)
Q Consensus 218 p~~~~~~~~li~~~~~~g~~~~A~ 241 (850)
|.+..+|+.|...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 444555555555666666655554
No 301
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=81.17 E-value=1.4e+02 Score=36.50 Aligned_cols=187 Identities=14% Similarity=0.132 Sum_probs=108.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh--hcCC
Q 003082 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHD 304 (850)
Q Consensus 227 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~--~~~~ 304 (850)
++-+-..+.+..+=+.+++++.+. +++..-| .|+.| .++|++|+..+..+.. ..|.-.++. ..+-
T Consensus 857 l~VAq~SqkDPkEyLP~L~el~~m--~~~~rkF--~ID~~--L~ry~~AL~hLs~~~~-------~~~~e~~n~I~kh~L 923 (1265)
T KOG1920|consen 857 LLVAQKSQKDPKEYLPFLNELKKM--ETLLRKF--KIDDY--LKRYEDALSHLSECGE-------TYFPECKNYIKKHGL 923 (1265)
T ss_pred HHHHHHhccChHHHHHHHHHHhhc--hhhhhhe--eHHHH--HHHHHHHHHHHHHcCc-------cccHHHHHHHHhccc
Confidence 344444556667777666666542 1222222 23322 4567777766665431 111111111 1123
Q ss_pred hHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHH
Q 003082 305 LKFTLEVYKNMQKLGVMADMAS----YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380 (850)
Q Consensus 305 ~~~a~~l~~~m~~~g~~pd~~t----~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~ 380 (850)
+.+|+.++ .|+... |.+..+-+...+.+++|.-+|+..-+. .-.+.+|-.+|+|.
T Consensus 924 y~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl-------------ekAl~a~~~~~dWr 982 (1265)
T KOG1920|consen 924 YDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL-------------EKALKAYKECGDWR 982 (1265)
T ss_pred chhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH-------------HHHHHHHHHhccHH
Confidence 33343333 345444 444445555677888888777754321 23467788899999
Q ss_pred HHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003082 381 MALKVKEDMLSAGVTPNTI--TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (850)
Q Consensus 381 ~A~~l~~~m~~~g~~p~~~--ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~ 458 (850)
+|+.+..+|... -|.. +--.|+.-+...++.-+|-++..+.... +.-.+..||+...|++|.++-..
T Consensus 983 ~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 983 EALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHh
Confidence 999999887532 1222 2356778888889888888888776542 23345667788888998887654
No 302
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=80.91 E-value=5.9 Score=37.42 Aligned_cols=94 Identities=12% Similarity=0.027 Sum_probs=63.9
Q ss_pred hhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHH
Q 003082 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (850)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (850)
+...|.+++|..-|..++ .+.|...+-.. .-+|.+.+..+.+.+.++.|+.-..+.++.+ |...
T Consensus 105 ~F~ngdyeeA~skY~~Al--e~cp~~~~e~r-sIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~----------- 168 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEAL--ESCPSTSTEER-SILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYE----------- 168 (271)
T ss_pred hhhcccHHHHHHHHHHHH--HhCccccHHHH-HHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhH-----------
Confidence 347899999999999999 55776543221 1244555666778899999998887777655 3211
Q ss_pred cCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003082 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHL 251 (850)
Q Consensus 203 ~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 251 (850)
.+.-.-..+|.+..++++|+.=|..+.+..
T Consensus 169 -------------------kAl~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 169 -------------------KALERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred -------------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 112233556777888888888888888753
No 303
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.87 E-value=3 Score=28.08 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSE 101 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~ 101 (850)
..++..++..|...|++++|+.++++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 4578899999999999999999999998764
No 304
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.82 E-value=15 Score=37.33 Aligned_cols=100 Identities=16% Similarity=0.104 Sum_probs=61.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCcC--HHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHH
Q 003082 251 LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ---NVTLN--IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMA 325 (850)
Q Consensus 251 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~pd--~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~ 325 (850)
|.+....+...++..-....+.+++...+-.++.. -..|+ .++|-.++. .-+...++.++..=+..|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll--ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL--KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH--ccChHHHHHHHhCcchhccccchh
Confidence 44445556666666666667788888777666543 11122 223222222 225556777777667777778888
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003082 326 SYNILLKACCLAGNTVLAQEIYGEVKH 352 (850)
Q Consensus 326 t~~~Ll~~~~~~g~~~~A~~i~~~m~~ 352 (850)
+++.||+.+.+.+++.+|..+.-.|..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 888888888887777777776655543
No 305
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.74 E-value=8.5 Score=39.04 Aligned_cols=108 Identities=13% Similarity=0.076 Sum_probs=72.8
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003082 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397 (850)
Q Consensus 318 ~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 397 (850)
.|.+....+...++.......+++.+...+-.++...+.- ..++. +-.++++ ++..=+.++++.++..=...|+-||
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~-~~~~~-~~~~~ir-lllky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAW-YLRNW-TIHTWIR-LLLKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchh-hhccc-cHHHHHH-HHHccChHHHHHHHhCcchhccccc
Confidence 3555566666666666666677777777766655421111 11221 1122222 3334466788888888889999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003082 398 TITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (850)
Q Consensus 398 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 428 (850)
.++++.+|+.+.+.+++.+|..+.-+|....
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888887653
No 306
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=78.88 E-value=3.6 Score=26.32 Aligned_cols=29 Identities=17% Similarity=0.183 Sum_probs=21.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKH 250 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 250 (850)
.+|+.++..|...|++++|+..|++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 35677888888888888888888887764
No 307
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=78.67 E-value=29 Score=32.58 Aligned_cols=42 Identities=14% Similarity=0.294 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003082 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (850)
Q Consensus 237 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 286 (850)
|++|...|+.... ..|+..+|+.-+.... +|-++..++.+.+
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 4566667776665 4588888888777653 4666666665554
No 308
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=78.27 E-value=99 Score=32.94 Aligned_cols=66 Identities=12% Similarity=0.109 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 003082 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP---NSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (850)
Q Consensus 396 p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 461 (850)
....+|..++..+.+.|.++.|...+..+.+.+... .....-.-.......|+..+|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355678899999999999999999999988754211 333444455666788999999999988775
No 309
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.69 E-value=88 Score=36.01 Aligned_cols=84 Identities=15% Similarity=0.107 Sum_probs=39.4
Q ss_pred hcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003082 375 DAKWWQMALKVKEDMLS-------AGVTPNTITWSSLINACANAG-----LVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (850)
Q Consensus 375 ~~g~~~~A~~l~~~m~~-------~g~~p~~~ty~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~ 442 (850)
...+.+.|+..|+...+ .| +.....-+..+|.+.. +.+.|+.++...-+.| .|+...+-..+..
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~ 336 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYE 336 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 44555555555555544 33 2223444444444432 4556777776666665 3343332222211
Q ss_pred HHH-hCCHHHHHHHHHHHhhc
Q 003082 443 CVE-ACQFDRAFRLFRSWTLS 462 (850)
Q Consensus 443 ~~~-~g~~~~A~~l~~~m~~~ 462 (850)
... ..+...|.++|...-..
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~ 357 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKA 357 (552)
T ss_pred cCCccccHHHHHHHHHHHHHc
Confidence 111 12345666666655443
No 310
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=77.55 E-value=28 Score=36.76 Aligned_cols=121 Identities=17% Similarity=0.083 Sum_probs=83.7
Q ss_pred hccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHH
Q 003082 61 STVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLN 140 (850)
Q Consensus 61 ~~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~ 140 (850)
+|+..+|++ ......++....+...-+.....+++++.. .|..+... ..+..-.......-.++....+|.+.+
T Consensus 56 rAL~~np~~-~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW---~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 56 RALKHNPDS-ERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELW---REYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred HHHHhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHH---HHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 478888877 888888888888888999999999999988 44443332 222222222223445667777776665
Q ss_pred Hc------CC----CCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCC
Q 003082 141 EL------GV----APLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP 187 (850)
Q Consensus 141 ~~------~~----~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 187 (850)
+. +. .+.......+..+++..|.-+.+.|..+.|+.+++.+++.++.
T Consensus 130 ~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~ 186 (321)
T PF08424_consen 130 RALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFF 186 (321)
T ss_pred HHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcC
Confidence 43 11 0111234466778888888899999999999999999998864
No 311
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=76.92 E-value=88 Score=31.62 Aligned_cols=139 Identities=12% Similarity=0.031 Sum_probs=78.7
Q ss_pred hhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHc
Q 003082 124 IREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVN 203 (850)
Q Consensus 124 ~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (850)
.+.+++++|+..|.+++..|+..+.-+.+.-..+++.+...|...|++..--+......+. |. -+..
T Consensus 14 v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~---------m~----~ftk 80 (421)
T COG5159 14 VKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREA---------ME----DFTK 80 (421)
T ss_pred hhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHH---------HH----Hhcc
Confidence 3779999999999999988888877666666667788888888888876555444322110 00 0111
Q ss_pred CCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003082 204 KPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (850)
Q Consensus 204 ~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (850)
..-..-...+++.+|.....+..-|..+...=.| |.+-=..|++ ...-.-+|.++.+.|++.+|+.+...+.
T Consensus 81 ~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iew--A~rEkr~fLr------~~Le~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 81 PKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEW--ADREKRKFLR------LELECKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH--HHHHHHHHHH------HHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 1111222334556665554444333333322111 1111111111 1122357788889999999988876543
No 312
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=76.65 E-value=42 Score=30.39 Aligned_cols=51 Identities=14% Similarity=0.154 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhh
Q 003082 617 NLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCEG 669 (850)
Q Consensus 617 ~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~~g~~p~~~~~~~li~~~~~~ 669 (850)
+..+|.+++++.++...-..+ ++.+|+-|.+.+++++..-|..+|.+..+|
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~--~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLT--SLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHH--HHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 445566666666554442222 455666666666666666666666665544
No 313
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.48 E-value=59 Score=36.41 Aligned_cols=148 Identities=14% Similarity=0.114 Sum_probs=85.0
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHH
Q 003082 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYK 313 (850)
Q Consensus 234 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~ 313 (850)
.|+++.|-.++..+. ....+.++..+.++|-.++|+++-.+ ||. -|- +....|+++.|.++..
T Consensus 599 rrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s~D-------~d~-rFe--lal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELSTD-------PDQ-RFE--LALKLGRLDIAFDLAV 661 (794)
T ss_pred hccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcCCC-------hhh-hhh--hhhhcCcHHHHHHHHH
Confidence 456666654333221 23445566666666666666655221 111 111 1123345555554443
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003082 314 NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (850)
Q Consensus 314 ~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 393 (850)
+. -+..-|..|-++....|++..|.+.|..... |..|+-.+...|+-+....+-....+.|
T Consensus 662 e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-------------~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 662 EA------NSEVKWRQLGDAALSAGELPLASECFLRARD-------------LGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred hh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc-------------hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 33 2566788888888888888888888875443 4566666777777766666666666655
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003082 394 VTPNTITWSSLINACANAGLVEQAMHLFEE 423 (850)
Q Consensus 394 ~~p~~~ty~~li~~~~~~g~~~~A~~l~~~ 423 (850)
.. |.-.-+|...|+++++.+++..
T Consensus 723 ~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 723 KN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred cc------chHHHHHHHcCCHHHHHHHHHh
Confidence 32 2233455667888887777644
No 314
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.37 E-value=45 Score=31.79 Aligned_cols=89 Identities=16% Similarity=0.139 Sum_probs=63.9
Q ss_pred HHHHHHHcCCChHHHHHHhhhC---CCCc----chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003082 196 RIVQLCVNKPDVNLAIRYACIV---PRAD----ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI 268 (850)
Q Consensus 196 ~l~~~~~~~~~~~~A~~~~~~~---p~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 268 (850)
.+.+.+.+.+++++|+..++.. |.++ .+-..|.......|.+++|+..++.....+. .......-.+++..
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~ 171 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence 4567788899999998888753 3333 2233477788888999999998887665332 22334455678888
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 003082 269 CGDYMKSRAIYEDLRSQN 286 (850)
Q Consensus 269 ~g~~~~A~~~~~~m~~~g 286 (850)
.|+-++|+.-|+.....+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 999999999998888764
No 315
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=76.00 E-value=26 Score=29.13 Aligned_cols=79 Identities=11% Similarity=-0.082 Sum_probs=51.4
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHH
Q 003082 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNM 315 (850)
Q Consensus 236 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m 315 (850)
..++|..+-+.+...+.. ...+--+-+..+...|+|++|..+.+.+ +.||...|.+|-....|-.+....-+.+|
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~rlGl~s~l~~rl~rl 94 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEWRLGLGSALESRLNRL 94 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 345666666655543211 1112112233466789999998887765 47999999888888888777777777777
Q ss_pred HHcC
Q 003082 316 QKLG 319 (850)
Q Consensus 316 ~~~g 319 (850)
...|
T Consensus 95 a~sg 98 (115)
T TIGR02508 95 AASG 98 (115)
T ss_pred HhCC
Confidence 7666
No 316
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=75.21 E-value=7.1 Score=26.16 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 583 VVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (850)
Q Consensus 583 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 611 (850)
..+++.|...|...|++++|..++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35677777888888888888888877654
No 317
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=74.60 E-value=5.6 Score=25.28 Aligned_cols=28 Identities=4% Similarity=0.119 Sum_probs=19.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003082 223 LFCNFVREFGKKRDLVSALRAYDASKKH 250 (850)
Q Consensus 223 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 250 (850)
++..+...|...|++++|++.|++.++.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4566777777888888888888777663
No 318
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=74.45 E-value=1e+02 Score=31.18 Aligned_cols=211 Identities=12% Similarity=0.111 Sum_probs=103.0
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhh
Q 003082 75 ADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSG 154 (850)
Q Consensus 75 ~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~ 154 (850)
..+++...+.+++++|+..|.+++..|...+.-...-.-..+-.+...|...|++..--++.....+.
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~------------ 74 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREA------------ 74 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHH------------
Confidence 35677888899999999999999998865443332222233334455666777776655544333221
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHH----HhhhCCCCcchHHHHHHH
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIR----YACIVPRADILFCNFVRE 230 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~----~~~~~p~~~~~~~~li~~ 230 (850)
+.+.. ..+..+.++.+-+ .+...+++....-.++..+.+ .|.+ +++. ..-+-+|..
T Consensus 75 ---m~~ft-----k~k~~KiirtLie--kf~~~~dsl~dqi~v~~~~ie-----wA~rEkr~fLr~-----~Le~Kli~l 134 (421)
T COG5159 75 ---MEDFT-----KPKITKIIRTLIE--KFPYSSDSLEDQIKVLTALIE-----WADREKRKFLRL-----ELECKLIYL 134 (421)
T ss_pred ---HHHhc-----chhHHHHHHHHHH--hcCCCCccHHHHHHHHHHHHH-----HHHHHHHHHHHH-----HHHHHHHHH
Confidence 11000 0111112211111 111223332222222222221 1111 1111 233568999
Q ss_pred HHhcCChHHHHHHHH----HHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHh----CCCCcCHHHHHHHHHh-
Q 003082 231 FGKKRDLVSALRAYD----ASKKHLSSPNMYICRTII-DVCGICGDYMKSRAIYEDLRS----QNVTLNIYVFNSLMNV- 300 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~----~m~~~g~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~----~g~~pd~~t~~~ll~~- 300 (850)
+.+.|+|.+|+.+.+ ++.+.+-.|+..+...+= .+|..-.+..++..-+...+- .-++|-...---|+++
T Consensus 135 ~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGI 214 (421)
T COG5159 135 LYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGI 214 (421)
T ss_pred HHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccc
Confidence 999999999998765 444445556554433322 345455555555444443332 1234444433344443
Q ss_pred ---hcCChHHHHHHHHHHHH
Q 003082 301 ---NAHDLKFTLEVYKNMQK 317 (850)
Q Consensus 301 ---~~~~~~~a~~l~~~m~~ 317 (850)
--+++.-|...|-+..+
T Consensus 215 lhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 215 LHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred eeeccccchhHHHHHHHHHh
Confidence 11355556555554443
No 319
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=74.10 E-value=86 Score=30.13 Aligned_cols=224 Identities=14% Similarity=0.067 Sum_probs=149.1
Q ss_pred cCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCcCHHHHHHHHH--hhcCChHHHH
Q 003082 234 KRDLVSALRAYDASKKHLSS-PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ-NVTLNIYVFNSLMN--VNAHDLKFTL 309 (850)
Q Consensus 234 ~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~t~~~ll~--~~~~~~~~a~ 309 (850)
.+.+..+...+......... .....+......+...+.+..+...+...... ........+..+.. ...++...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45566666666666654322 13567788888899999999999999887753 11222233322222 2345778888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 003082 310 EVYKNMQKLGVMADMASYNILLK-ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (850)
Q Consensus 310 ~l~~~m~~~g~~pd~~t~~~Ll~-~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~ 388 (850)
+.+.........+ ......... .+...|+++.|...|....... .........+......+...++.+.+...+..
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELD--PELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 8888887754333 222223333 7889999999999999885410 00012333444445557788999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Q 003082 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN-SQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (850)
Q Consensus 389 m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 462 (850)
............+..+...+...++++.|...+....... |+ ...+..+...+...+..+.+...+......
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 193 ALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9875322146778888889999999999999999998753 33 344444444555777889998888876654
No 320
>PRK11619 lytic murein transglycosylase; Provisional
Probab=73.91 E-value=1.9e+02 Score=33.98 Aligned_cols=118 Identities=8% Similarity=-0.010 Sum_probs=64.7
Q ss_pred CChHHHHHHHHHHHHhhhcCCcccC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 003082 338 GNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415 (850)
Q Consensus 338 g~~~~A~~i~~~m~~~~~~g~~~~d--~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 415 (850)
.+.+.|..++...... ..+.+. ..++..+....+..+...++...++...... .|......-+..-.+.++++
T Consensus 255 ~d~~~A~~~~~~~~~~---~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~ 329 (644)
T PRK11619 255 QDAENARLMIPSLVRA---QKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRR 329 (644)
T ss_pred hCHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHH
Confidence 3457777777765431 112222 2234444444444433556666666543222 23444455555555777888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 003082 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (850)
Q Consensus 416 ~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 461 (850)
.+...+..|.... .-...-.--+..++...|+.++|...|+....
T Consensus 330 ~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 330 GLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8777777775432 22333344556666667888888888887643
No 321
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=73.08 E-value=1.5e+02 Score=32.64 Aligned_cols=174 Identities=11% Similarity=0.091 Sum_probs=107.8
Q ss_pred ccHHHHHHHHHcCCChHHHHHHhhh---CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003082 192 DEEFRIVQLCVNKPDVNLAIRYACI---VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI 268 (850)
Q Consensus 192 ~~~~~l~~~~~~~~~~~~A~~~~~~---~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 268 (850)
.....++..+...-...-.+.+... ...+-.+|..++..|... ..++-..+|+++.+..+ .|++.-..|...|-+
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~yEk 144 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKYEK 144 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHHHH
Confidence 3344444444443333333332222 133446778888888888 66778888998888654 344555556665555
Q ss_pred cCCHHHHHHHHHHHHhCCCC-----cCHHHHHHHHHhhcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCChHH
Q 003082 269 CGDYMKSRAIYEDLRSQNVT-----LNIYVFNSLMNVNAHDLKFTLEVYKNMQK-LGVMADMASYNILLKACCLAGNTVL 342 (850)
Q Consensus 269 ~g~~~~A~~~~~~m~~~g~~-----pd~~t~~~ll~~~~~~~~~a~~l~~~m~~-~g~~pd~~t~~~Ll~~~~~~g~~~~ 342 (850)
++.+.+...|.....+=++ .=...|.-|...-..+.+..+.+...+.. .|...-.+.+--+-.-|....++++
T Consensus 145 -ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~e 223 (711)
T COG1747 145 -IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTE 223 (711)
T ss_pred -hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHH
Confidence 8888888888887654221 11245666666556678888877777755 3444445566666678888889999
Q ss_pred HHHHHHHHHHhhhcCCcccCHhHHHHHHHHH
Q 003082 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373 (850)
Q Consensus 343 A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~ 373 (850)
|.+++..+.+.. ..|...-..++..+
T Consensus 224 ai~Ilk~il~~d-----~k~~~ar~~~i~~l 249 (711)
T COG1747 224 AIRILKHILEHD-----EKDVWARKEIIENL 249 (711)
T ss_pred HHHHHHHHhhhc-----chhhhHHHHHHHHH
Confidence 999998776642 23444444444443
No 322
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=72.84 E-value=1.6e+02 Score=32.62 Aligned_cols=72 Identities=18% Similarity=0.146 Sum_probs=48.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHH
Q 003082 368 TIVKVFADAKWWQMALKVKEDMLSAGVT-PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS--QCCNILL 440 (850)
Q Consensus 368 ~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~~~~~ll 440 (850)
.+..++-+.|+.++|.+.|++|.+.... -+......||.++...+.+.++..++.+..+.. .|.. .+|+..+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~-lpkSAti~YTaAL 338 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS-LPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-CCchHHHHHHHHH
Confidence 3444555778888888888888764322 234467778888888889999888888865432 2333 3466544
No 323
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=72.00 E-value=2e+02 Score=33.55 Aligned_cols=213 Identities=14% Similarity=0.234 Sum_probs=88.6
Q ss_pred HHHHHHHHHcCCChHHHHHHh----hhCCCCcchHHHHHHHHHhcCC-------hHHHHHHHHHHHhCCCCCCHH---HH
Q 003082 194 EFRIVQLCVNKPDVNLAIRYA----CIVPRADILFCNFVREFGKKRD-------LVSALRAYDASKKHLSSPNMY---IC 259 (850)
Q Consensus 194 ~~~l~~~~~~~~~~~~A~~~~----~~~p~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~---~~ 259 (850)
.-.++--|.+.|.+++|.++. +.+......+...+..|....+ -+....-|++..+.....|++ +|
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY 193 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVY 193 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHH
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHH
Confidence 445666777888888888887 5556656667777777766422 234455566655543322433 33
Q ss_pred HHHHHHHHhcCCHHHHH-HHHHHHHhCCCCcCHHHHHHHHHhhcCC------h-HHHHHHHHHH-HHcC---CCCCHHHH
Q 003082 260 RTIIDVCGICGDYMKSR-AIYEDLRSQNVTLNIYVFNSLMNVNAHD------L-KFTLEVYKNM-QKLG---VMADMASY 327 (850)
Q Consensus 260 ~~li~~~~~~g~~~~A~-~~~~~m~~~g~~pd~~t~~~ll~~~~~~------~-~~a~~l~~~m-~~~g---~~pd~~t~ 327 (850)
..+ +++.-...-. .+.. ..+.+.|-.|.-..... . ...++-++.. .+.| +.+ ....
T Consensus 194 ~il----g~cD~~~~~~~~V~~-------tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~-~~~p 261 (613)
T PF04097_consen 194 KIL----GRCDLSRRHLPEVAR-------TIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNA-GSNP 261 (613)
T ss_dssp HHH----HT--CCC-S-TTC---------SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT-----
T ss_pred HHH----hcCCccccchHHHhC-------cHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhccc-chhH
Confidence 333 2221100000 1110 11233444443322110 0 0112222222 1222 222 1112
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHH
Q 003082 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV-TPNTITWSSLIN 406 (850)
Q Consensus 328 ~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~ty~~li~ 406 (850)
-.....+.-.|+++.|.+.+-.... ...|.+.+...+..|.-.+- ....-..+..... .|...-+..||.
T Consensus 262 ~~Yf~~LlLtgqFE~AI~~L~~~~~------~~~dAVH~AIaL~~~gLL~~---~~~~~~~lls~~~~~~~~ln~arLI~ 332 (613)
T PF04097_consen 262 LLYFQVLLLTGQFEAAIEFLYRNEF------NRVDAVHFAIALAYYGLLRV---SDSSSAPLLSVDPGDPPPLNFARLIG 332 (613)
T ss_dssp --HHHHHHHTT-HHHHHHHHHT--T-------HHHHHHHHHHHHHTT---------------------------HHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHhhcc------CcccHHHHHHHHHHcCCCCC---CCccccceeeecCCCCCCcCHHHHHH
Confidence 2344556678999999988765221 34566666655554432221 1111133332111 111256788888
Q ss_pred HHHHc---CCHHHHHHHHHHHHHc
Q 003082 407 ACANA---GLVEQAMHLFEEMLQA 427 (850)
Q Consensus 407 ~~~~~---g~~~~A~~l~~~m~~~ 427 (850)
.|++. .+..+|.+.|-.+...
T Consensus 333 ~Y~~~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 333 QYTRSFEITDPREALQYLYLICLF 356 (613)
T ss_dssp HHHHTTTTT-HHHHHHHHHGGGGS
T ss_pred HHHHHHhccCHHHHHHHHHHHHHc
Confidence 88763 5678888888776543
No 324
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=71.97 E-value=6.9 Score=24.59 Aligned_cols=28 Identities=11% Similarity=0.065 Sum_probs=21.4
Q ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHhCC
Q 003082 158 LKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (850)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (850)
+...+..+.+.|++++|++.|++++...
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 4455666677899999999999887654
No 325
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=70.77 E-value=2.2e+02 Score=33.35 Aligned_cols=329 Identities=11% Similarity=0.029 Sum_probs=155.5
Q ss_pred hhhHHHHHHHHHh-hcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHH-HHHhhhcCchhHHHHHHHHHHHcCCCCc
Q 003082 70 RNDYYADMASKLA-KDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASG-IVKSIREGRIDCVVGVLKKLNELGVAPL 147 (850)
Q Consensus 70 ~~~~~~~l~~~l~-~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~g~~~~A~~~l~~~~~~~~~p~ 147 (850)
-..++-.++..|. .-..++.|+..+++.+..... ..+..+- + .+..+ +..+ .+.+...|...+++.++.--...
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k-~-~~~~ll~~i~-~~~~~~~a~~~l~~~I~~~~~~~ 133 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLTDLK-F-RCQFLLARIY-FKTNPKAALKNLDKAIEDSETYG 133 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHHHH-H-HHHHHHHHHH-HhcCHHHHHHHHHHHHHHHhccC
Confidence 3566677777776 558899999999988765433 2222111 1 11111 2233 33444448888888775421111
Q ss_pred cccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHH
Q 003082 148 ELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNF 227 (850)
Q Consensus 148 ~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~l 227 (850)
...+...+..+ .+. .+...+++..|++.++.+........+ +.. .++..+
T Consensus 134 ~~~w~~~frll-~~~-l~~~~~d~~~Al~~L~~~~~~a~~~~d---~~~-------------------------~v~~~l 183 (608)
T PF10345_consen 134 HSAWYYAFRLL-KIQ-LALQHKDYNAALENLQSIAQLANQRGD---PAV-------------------------FVLASL 183 (608)
T ss_pred chhHHHHHHHH-HHH-HHHhcccHHHHHHHHHHHHHHhhhcCC---HHH-------------------------HHHHHH
Confidence 11233334333 111 111227888888888877654321111 100 122222
Q ss_pred HH--HHHhcCChHHHHHHHHHHHhCC---------CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhC---CCCcCH
Q 003082 228 VR--EFGKKRDLVSALRAYDASKKHL---------SSPNMYICRTIIDVCG--ICGDYMKSRAIYEDLRSQ---NVTLNI 291 (850)
Q Consensus 228 i~--~~~~~g~~~~A~~~~~~m~~~g---------~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~---g~~pd~ 291 (850)
+. ...+.+..+++.+..+++.... ..|-..+|..+++.++ ..|+++.+.+.++++.+. .-...
T Consensus 184 ~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~- 262 (608)
T PF10345_consen 184 SEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSP- 262 (608)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCc-
Confidence 22 2234555666666666553221 1245667777877654 557777777776665431 10000
Q ss_pred HHHHH-----HHHhhc--CChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHH--HHcCChHHHHHHHHHHHHhhhcCC--
Q 003082 292 YVFNS-----LMNVNA--HDLK--FTLEVYKNMQKLGVMADMASYNILLKAC--CLAGNTVLAQEIYGEVKHLEAKGV-- 358 (850)
Q Consensus 292 ~t~~~-----ll~~~~--~~~~--~a~~l~~~m~~~g~~pd~~t~~~Ll~~~--~~~g~~~~A~~i~~~m~~~~~~g~-- 358 (850)
.|.. .|.... +... ...-+|..|.+. +.....-++.+. +..+..+.|.+.+++..+..++..
T Consensus 263 -~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~----~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~ 337 (608)
T PF10345_consen 263 -SWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKE----ELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIK 337 (608)
T ss_pred -cCCCcCCCeeEEeecccccccCCCceeEEeecCHH----HHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhcc
Confidence 0100 000000 0000 001223333221 222222333333 334555566666655554432211
Q ss_pred --ccc--------CHhHHHHHHHH---------HHhcCCHHHHHHHHHHHHHCCC-CC-----CHHHHHHHHHHH--HHc
Q 003082 359 --LKL--------DVFTYSTIVKV---------FADAKWWQMALKVKEDMLSAGV-TP-----NTITWSSLINAC--ANA 411 (850)
Q Consensus 359 --~~~--------d~~ty~~li~~---------~~~~g~~~~A~~l~~~m~~~g~-~p-----~~~ty~~li~~~--~~~ 411 (850)
..+ +...|...+.. .+-.+++..|...+++|.+..- .| ....+...+.|. ...
T Consensus 338 ~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~ 417 (608)
T PF10345_consen 338 SPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQST 417 (608)
T ss_pred CCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHc
Confidence 011 11222222222 2346889999999999885421 11 122333333333 346
Q ss_pred CCHHHHHHHHH--------HHHHcCCCCCHHHHHH
Q 003082 412 GLVEQAMHLFE--------EMLQAGCEPNSQCCNI 438 (850)
Q Consensus 412 g~~~~A~~l~~--------~m~~~g~~p~~~~~~~ 438 (850)
|+.+.|+..|. .....+...+..++..
T Consensus 418 g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 418 GDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred CCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 89999999997 4444455555555543
No 326
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=70.66 E-value=1.9 Score=39.39 Aligned_cols=88 Identities=11% Similarity=0.172 Sum_probs=62.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Q 003082 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447 (850)
Q Consensus 368 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g 447 (850)
.+|..|.+.+..+....+++.+...+..-+....+.++..|++.+..+...++++. .+..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcc
Confidence 35566777788888888888888766666788889999999998877777777661 12233456777888888
Q ss_pred CHHHHHHHHHHHhhc
Q 003082 448 QFDRAFRLFRSWTLS 462 (850)
Q Consensus 448 ~~~~A~~l~~~m~~~ 462 (850)
.+++|.-++.++...
T Consensus 85 l~~~a~~Ly~~~~~~ 99 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNH 99 (143)
T ss_dssp SHHHHHHHHHCCTTH
T ss_pred hHHHHHHHHHHcccH
Confidence 888888888765543
No 327
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=70.37 E-value=36 Score=28.24 Aligned_cols=60 Identities=17% Similarity=0.159 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHH
Q 003082 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371 (850)
Q Consensus 307 ~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~ 371 (850)
+..+-++.+....+.|++.+..+-+++|-+.+++..|.++|+-++.. +..+...|..++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-----~~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-----CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-----ccCchhhHHHHHH
Confidence 34555666667788999999999999999999999999999988752 2234446666553
No 328
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=70.19 E-value=6.2 Score=23.62 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhcCChHHHHHHHH
Q 003082 73 YYADMASKLAKDGRLEEFAMIVE 95 (850)
Q Consensus 73 ~~~~l~~~l~~~g~~~~A~~l~~ 95 (850)
....++..+...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45678999999999999999886
No 329
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=70.17 E-value=2.4e+02 Score=33.60 Aligned_cols=237 Identities=14% Similarity=0.104 Sum_probs=114.7
Q ss_pred HhhhcCchhHHHHHHHHHHHcCCCCccccchhh---hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHH
Q 003082 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSG---FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIV 198 (850)
Q Consensus 122 ~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~---~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 198 (850)
....++++++|..++.++...-..|+....... +..+. +......|+.++|+++.+..+..- |... ..
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~--a~val~~~~~e~a~~lar~al~~L--~~~~-~~---- 494 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALR--AQVALNRGDPEEAEDLARLALVQL--PEAA-YR---- 494 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHhc--cccc-ch----
Confidence 445678888888888877664333332211111 11111 112234567777776666554321 1110 00
Q ss_pred HHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH---HHHH--HHHHHhcCC--
Q 003082 199 QLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYI---CRTI--IDVCGICGD-- 271 (850)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~l--i~~~~~~g~-- 271 (850)
.....++++..+..-.|++++|+.+..+..+.--..+... |..+ ...+-.+|+
T Consensus 495 --------------------~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~ 554 (894)
T COG2909 495 --------------------SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVA 554 (894)
T ss_pred --------------------hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHH
Confidence 0114455677777778888888877665544311122222 2222 233555663
Q ss_pred HHHHHHHHHHHHhC-CCC-----cCHHHHHHHHHhhcCChHHHH----HHHHHHHHcCCCCCHHHH--HHHHHHHHHcCC
Q 003082 272 YMKSRAIYEDLRSQ-NVT-----LNIYVFNSLMNVNAHDLKFTL----EVYKNMQKLGVMADMASY--NILLKACCLAGN 339 (850)
Q Consensus 272 ~~~A~~~~~~m~~~-g~~-----pd~~t~~~ll~~~~~~~~~a~----~l~~~m~~~g~~pd~~t~--~~Ll~~~~~~g~ 339 (850)
+.+....|...... ... +-..++..++.++.+ ++.+. .-+.........|-...+ ..|+......|+
T Consensus 555 ~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r-~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gd 633 (894)
T COG2909 555 RAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR-LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGD 633 (894)
T ss_pred HHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH-HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCC
Confidence 33333334333321 001 112223333333333 33322 222222222222222222 367778888999
Q ss_pred hHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHH--HHhcCCHHHHHHHHHH
Q 003082 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV--FADAKWWQMALKVKED 388 (850)
Q Consensus 340 ~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~--~~~~g~~~~A~~l~~~ 388 (850)
.+.|....+++......+...++..+-...++. ....|+.+.+.....+
T Consensus 634 l~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 634 LDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 999999999999877665433333332233332 3456787777766655
No 330
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=70.09 E-value=7 Score=24.54 Aligned_cols=28 Identities=14% Similarity=0.073 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 003082 73 YYADMASKLAKDGRLEEFAMIVESVVVS 100 (850)
Q Consensus 73 ~~~~l~~~l~~~g~~~~A~~l~~~~~~~ 100 (850)
++-.++..+.+.|++++|...|+++++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3456788889999999999999999987
No 331
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=69.97 E-value=29 Score=29.06 Aligned_cols=60 Identities=17% Similarity=0.140 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHH
Q 003082 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371 (850)
Q Consensus 307 ~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~ 371 (850)
+..+-++.+....+.|++.+..+.+++|-+.+++..|.++|+.++.. +......|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-----~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-----CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-----TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-----ccChHHHHHHHHH
Confidence 34455566666778899999999999999999999999999988864 2222236776664
No 332
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=69.29 E-value=34 Score=28.35 Aligned_cols=60 Identities=13% Similarity=0.283 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003082 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (850)
Q Consensus 381 ~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~ 441 (850)
++.+-++.+....+.|+.....+-+++|-+.+++.-|.++|+-.+.+ +..+...|..+++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 55666667777778888888888888888888888888888877643 2224456666654
No 333
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=68.21 E-value=2e+02 Score=31.88 Aligned_cols=186 Identities=17% Similarity=0.131 Sum_probs=113.0
Q ss_pred ccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003082 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (850)
Q Consensus 360 ~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 439 (850)
..|....-+++..+..+-.+.-+..+..+|+.-|- +...|..++.+|... .-++-..+++.+.+..+ -|++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHH
Confidence 34555667777778887777777888888877652 566777788888777 45666777777776542 244444455
Q ss_pred HHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHH
Q 003082 440 LQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519 (850)
Q Consensus 440 l~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~ 519 (850)
..-|-+ ++...+..+|......-+... ....--..|.
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~------------------------------------------q~~~i~evWe 175 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRR------------------------------------------QNAAIKEVWE 175 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchh------------------------------------------hhhhHHHHHH
Confidence 555544 777777777766543211100 0000112344
Q ss_pred HHHHHHhccHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003082 520 ILMKACCTDYYRVKALMNEMRT-VGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVC 593 (850)
Q Consensus 520 ~li~~~~~~~~~a~~l~~~m~~-~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~ 593 (850)
-++.--+.+.+....+...+.. .|..--.+.+--+-.-|....++++|++++..+.+.. ..|...-..+|.-+
T Consensus 176 KL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 176 KLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred HHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 4444444566667776666654 3444445566666677888899999999999777654 23444444455443
No 334
>PRK04946 hypothetical protein; Provisional
Probab=67.93 E-value=7.1 Score=36.90 Aligned_cols=53 Identities=23% Similarity=0.259 Sum_probs=42.5
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEecCCcccccCcccchHHHHHHHHHhhh
Q 003082 712 LAIDLRGLTKVEARIIVLAVLRMMKENYSLGVPVKDDLMIVLGPNKVNKIQAKHDLEVKDAITKLLQD 779 (850)
Q Consensus 712 ~~~~l~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~i~~g~gk~s~~~g~~~~~v~~~v~~~l~~ 779 (850)
..+||||+...+|+..+..++..-... | -..+.||.|.|. ..||..|...|..
T Consensus 96 ~~LDLhG~~~eeA~~~L~~fl~~a~~~---g---~r~v~IIHGkG~---------gvLk~~V~~wL~q 148 (181)
T PRK04946 96 LFLDLHGLTQLQAKQELGALIAACRKE---H---VFCACVMHGHGK---------HILKQQTPLWLAQ 148 (181)
T ss_pred eEEECCCCCHHHHHHHHHHHHHHHHHc---C---CCEEEEEcCCCH---------hHHHHHHHHHHcC
Confidence 358999999999999988887665543 3 235789999885 5799999999987
No 335
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=67.13 E-value=22 Score=36.55 Aligned_cols=46 Identities=7% Similarity=-0.038 Sum_probs=25.9
Q ss_pred hhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHH
Q 003082 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAI 211 (850)
Q Consensus 164 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 211 (850)
.|.++|.+++|+.+|..-.... |.+++.+.+-+.+|.+...+..|+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~--P~NpV~~~NRA~AYlk~K~FA~AE 151 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVY--PHNPVYHINRALAYLKQKSFAQAE 151 (536)
T ss_pred hhhhccchhHHHHHhhhhhccC--CCCccchhhHHHHHHHHHHHHHHH
Confidence 3556677777777776554332 555555555555555555554443
No 336
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=66.37 E-value=1e+02 Score=27.96 Aligned_cols=98 Identities=16% Similarity=0.142 Sum_probs=52.2
Q ss_pred HHHHcCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCc-ccCHhHHHHHHHHHHhcCC-HHHHHHHHHHH
Q 003082 314 NMQKLGVMADM--ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL-KLDVFTYSTIVKVFADAKW-WQMALKVKEDM 389 (850)
Q Consensus 314 ~m~~~g~~pd~--~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~-~~d~~ty~~li~~~~~~g~-~~~A~~l~~~m 389 (850)
.|.+.+..++. ...|.++.-....+.+.-...+++.+......... ..+..+|++++++.+...- ---+..+|..|
T Consensus 27 y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~L 106 (145)
T PF13762_consen 27 YMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFL 106 (145)
T ss_pred HhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHH
Confidence 34444444443 23455555555556666555555555332110000 1234456667766655544 34456666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHHc
Q 003082 390 LSAGVTPNTITWSSLINACANA 411 (850)
Q Consensus 390 ~~~g~~p~~~ty~~li~~~~~~ 411 (850)
.+.+.+++..-|..+|.++.+.
T Consensus 107 k~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 107 KKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHcCCCCCHHHHHHHHHHHHcC
Confidence 6666667777777777665554
No 337
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=66.05 E-value=30 Score=29.01 Aligned_cols=60 Identities=13% Similarity=0.266 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003082 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (850)
Q Consensus 381 ~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~ 441 (850)
+..+-++.+....+.|+.....+.+.+|-+.+++..|.++|+-++.+ +.+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 45556666667778888888888888888888888888888887754 2333336666664
No 338
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=65.71 E-value=2e+02 Score=30.98 Aligned_cols=147 Identities=11% Similarity=-0.013 Sum_probs=94.6
Q ss_pred hcCchhHHHHHHHHHHHcCCCCccc-----cchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHH
Q 003082 125 REGRIDCVVGVLKKLNELGVAPLEL-----FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ 199 (850)
Q Consensus 125 ~~g~~~~A~~~l~~~~~~~~~p~~~-----~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (850)
....+.++...|..+.... .|+.. .+++-.++++.+...+..+|+.+.|.+++++.+=.-. ..+..
T Consensus 6 hs~~Y~~~q~~F~~~v~~~-Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e--------~~~~~ 76 (360)
T PF04910_consen 6 HSKAYQEAQEQFYAAVQSH-DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFE--------RAFHP 76 (360)
T ss_pred CCHHHHHHHHHHHHHHHcc-CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------HHHHH
Confidence 4456778888888887654 66532 3556677888888888889999999998887642100 00000
Q ss_pred HH------HcCCChHHHHHHhhhCCCCcchH---HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hc
Q 003082 200 LC------VNKPDVNLAIRYACIVPRADILF---CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCG-IC 269 (850)
Q Consensus 200 ~~------~~~~~~~~A~~~~~~~p~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~ 269 (850)
.+ ...|.... -| ..+.+...| ..-|..+.++|.+..|+++.+-+...++.-|....-.+|+.|+ +.
T Consensus 77 ~F~~~~~~~~~g~~rL---~~-~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs 152 (360)
T PF04910_consen 77 SFSPFRSNLTSGNCRL---DY-RRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRS 152 (360)
T ss_pred HhhhhhcccccCcccc---CC-ccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhc
Confidence 01 00000000 00 012222333 3458889999999999999999999877667888888888765 55
Q ss_pred CCHHHHHHHHHHHHh
Q 003082 270 GDYMKSRAIYEDLRS 284 (850)
Q Consensus 270 g~~~~A~~~~~~m~~ 284 (850)
++++--+++++....
T Consensus 153 ~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 153 RQYQWLIDFSESPLA 167 (360)
T ss_pred CCHHHHHHHHHhHhh
Confidence 788888888876554
No 339
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.30 E-value=2.6e+02 Score=32.20 Aligned_cols=174 Identities=13% Similarity=0.079 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCcccHHHHHHHH-----HcCCChHHHHHHhhhCCC---------CcchHHHHHHHHHhcC-
Q 003082 171 VEMFVGLMEVLEEFRLPVKELDEEFRIVQLC-----VNKPDVNLAIRYACIVPR---------ADILFCNFVREFGKKR- 235 (850)
Q Consensus 171 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~A~~~~~~~p~---------~~~~~~~li~~~~~~g- 235 (850)
..+|.+.++.....+ .......++..+ ....+.+.|+.+++.+-. ...+.+.+...|.+..
T Consensus 228 ~~~a~~~~~~~a~~g----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhc----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCC
Confidence 456777777776655 222333333333 234577777777765411 2244556666666643
Q ss_pred ----ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh----hcCChH
Q 003082 236 ----DLVSALRAYDASKKHLSSPNMYICRTIIDVCGI-CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV----NAHDLK 306 (850)
Q Consensus 236 ----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~----~~~~~~ 306 (850)
+...|+.+|....+.|. |+....-..+..... ..+...|.++|....+.|.. +..-+.+++.. ...+..
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred CccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHH
Confidence 56678888877777654 443332222222222 23567788888877777643 22223333221 123667
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003082 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (850)
Q Consensus 307 ~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~ 352 (850)
.|..++++.-..|........ ..+..+.. ++.+.+.-.+..+..
T Consensus 382 ~A~~~~k~aA~~g~~~A~~~~-~~~~~~g~-~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 382 LAFAYYKKAAEKGNPSAAYLL-GAFYEYGV-GRYDTALALYLYLAE 425 (552)
T ss_pred HHHHHHHHHHHccChhhHHHH-HHHHHHcc-ccccHHHHHHHHHHH
Confidence 777777777776622222222 22223333 555555555555544
No 340
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.04 E-value=2e+02 Score=30.84 Aligned_cols=91 Identities=15% Similarity=0.185 Sum_probs=57.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------CCCcC
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHL--SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ---------NVTLN 290 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------g~~pd 290 (850)
..+..+.+.|..+|+++.|++.|-+....- ....+..|-.+|..-.-.|+|........+..+. .+.+-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 456678888999999999999998865431 1123445667777777788888877777666543 12333
Q ss_pred HHHHHHHHHhhcCChHHHHHHH
Q 003082 291 IYVFNSLMNVNAHDLKFTLEVY 312 (850)
Q Consensus 291 ~~t~~~ll~~~~~~~~~a~~l~ 312 (850)
...+..|.....+++..|.+.|
T Consensus 231 l~C~agLa~L~lkkyk~aa~~f 252 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYF 252 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444555554444
No 341
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=64.86 E-value=14 Score=23.36 Aligned_cols=27 Identities=15% Similarity=0.295 Sum_probs=19.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003082 223 LFCNFVREFGKKRDLVSALRAYDASKK 249 (850)
Q Consensus 223 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 249 (850)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456677777777777777777777665
No 342
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=64.39 E-value=1.7e+02 Score=29.89 Aligned_cols=63 Identities=14% Similarity=0.296 Sum_probs=39.1
Q ss_pred ccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003082 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA-GVTPNTITWSSLINACANAGLVEQAMHLFE 422 (850)
Q Consensus 360 ~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~A~~l~~ 422 (850)
.++..+...+|..+++.++|..-+++++..... +..-|...|..+|....+.|+..-..++.+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 455556666666666666666666666666544 444566666666666666666655555544
No 343
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.96 E-value=1.6e+02 Score=29.16 Aligned_cols=73 Identities=15% Similarity=0.301 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHH
Q 003082 597 KRLKQAFSLFEEMKH--YQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKAN-------DTYLKELIEEWC 667 (850)
Q Consensus 597 g~~~~A~~l~~~m~~--~g~~p~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~~g~~p~-------~~~~~~li~~~~ 667 (850)
.++++|+..|++.-+ .|-..+...-.+++..---.+.++.-.+|+.+|++.....+.-+ .+.+.+.+-++|
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 456667777776655 34455566666777776666677777789999999887665444 345566666666
Q ss_pred hh
Q 003082 668 EG 669 (850)
Q Consensus 668 ~~ 669 (850)
+.
T Consensus 208 ~~ 209 (288)
T KOG1586|consen 208 KA 209 (288)
T ss_pred cc
Confidence 54
No 344
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=63.70 E-value=1.8e+02 Score=29.81 Aligned_cols=124 Identities=10% Similarity=0.104 Sum_probs=78.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCcCHHHHHHHHHhhcC----ChHHHHHHHHHHHH-cCCCCCHHHHHHHHH
Q 003082 259 CRTIIDVCGICGDYMKSRAIYEDLRS-QNVTLNIYVFNSLMNVNAH----DLKFTLEVYKNMQK-LGVMADMASYNILLK 332 (850)
Q Consensus 259 ~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~pd~~t~~~ll~~~~~----~~~~a~~l~~~m~~-~g~~pd~~t~~~Ll~ 332 (850)
|..|+. ++....+|+.+|+...- ..+--|..+...+++.... ....--++.+.+.. .|-.++..+....|.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 555553 34456677777773322 2344566666666664321 33444556665544 345677778888888
Q ss_pred HHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 003082 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (850)
Q Consensus 333 ~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~ 388 (850)
.+++.+++..-.++++.-.. .....-|...|..+|+...+.|+..-..++.++
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~---~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIP---NSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHhcccHHHHHHHHHHhcc---cCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 88888888888887776543 112345777888888888888887666655544
No 345
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=63.04 E-value=1.8e+02 Score=29.68 Aligned_cols=53 Identities=11% Similarity=-0.014 Sum_probs=27.3
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003082 556 DACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEM 609 (850)
Q Consensus 556 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m 609 (850)
..|..+|.+.+|.++.+...... +.+...|-.++..+...|+--.|.+-+++|
T Consensus 287 ~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 44555555555555555554432 234444555555555555555555555444
No 346
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=62.46 E-value=20 Score=22.71 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=26.2
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 003082 72 DYYADMASKLAKDGRLEEFAMIVESVVVS 100 (850)
Q Consensus 72 ~~~~~l~~~l~~~g~~~~A~~l~~~~~~~ 100 (850)
.+|..++..+...|++++|...|++.++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46778899999999999999999999887
No 347
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=61.87 E-value=3.2e+02 Score=32.00 Aligned_cols=126 Identities=17% Similarity=0.238 Sum_probs=66.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC----CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCC---CCcCHHHHHHH
Q 003082 226 NFVREFGKKRDLVSALRAYDASKKHL----SSPNMYICRTI-IDVCGICGDYMKSRAIYEDLRSQN---VTLNIYVFNSL 297 (850)
Q Consensus 226 ~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~pd~~t~~~l 297 (850)
.++..|.+.+... |....++.++.- ..+-...|.-+ +..+...+++..|.+.++.+...- ..|-..++..+
T Consensus 105 ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l 183 (608)
T PF10345_consen 105 LLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASL 183 (608)
T ss_pred HHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence 3566666666555 777766655431 11223333333 333333367888888877766432 23444444444
Q ss_pred HHh----hcCChHHHHHHHHHHHHcC---------CCCCHHHHHHHHHHHH--HcCChHHHHHHHHHHHH
Q 003082 298 MNV----NAHDLKFTLEVYKNMQKLG---------VMADMASYNILLKACC--LAGNTVLAQEIYGEVKH 352 (850)
Q Consensus 298 l~~----~~~~~~~a~~l~~~m~~~g---------~~pd~~t~~~Ll~~~~--~~g~~~~A~~i~~~m~~ 352 (850)
+.+ ..+..+++.+..+++.... ..|-..+|..+++.++ ..|+++.+...++++.+
T Consensus 184 ~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 184 SEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 443 2344555666665553311 1345566777776665 45666666655554443
No 348
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=61.54 E-value=63 Score=31.09 Aligned_cols=20 Identities=25% Similarity=0.094 Sum_probs=8.3
Q ss_pred CHHHHHHHHHHHHHcCCHHH
Q 003082 397 NTITWSSLINACANAGLVEQ 416 (850)
Q Consensus 397 ~~~ty~~li~~~~~~g~~~~ 416 (850)
|+..+.+|++.+-+.|+++.
T Consensus 177 n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred CHHHHHHHHHHHHHhcchhh
Confidence 34444444444444444433
No 349
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=60.15 E-value=2e+02 Score=29.23 Aligned_cols=107 Identities=11% Similarity=-0.001 Sum_probs=66.3
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhc------CChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCC
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSE------GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGV 144 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~------~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~ 144 (850)
.......++.+.-..++..|+...++..+.= .++..-...+....+.-+|.+++..++|.+++...-+-..
T Consensus 35 ~~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq--- 111 (309)
T PF07163_consen 35 VSLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQ--- 111 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhc---
Confidence 3444455666677788888888888877642 1222111233445566678899999999998887655442
Q ss_pred CCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhC
Q 003082 145 APLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184 (850)
Q Consensus 145 ~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~ 184 (850)
.|.... +-++.+.+ ..|.+.|+...+.++-...++.
T Consensus 112 ~pEklP-pkIleLCI---LLysKv~Ep~amlev~~~WL~~ 147 (309)
T PF07163_consen 112 VPEKLP-PKILELCI---LLYSKVQEPAAMLEVASAWLQD 147 (309)
T ss_pred CcccCC-HHHHHHHH---HHHHHhcCHHHHHHHHHHHHhC
Confidence 333321 12234333 3467788888888888777754
No 350
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=58.29 E-value=2.3e+02 Score=29.19 Aligned_cols=67 Identities=16% Similarity=0.241 Sum_probs=35.2
Q ss_pred cCCCHHHHHHHH-HHHHHCCCCCCHH----HHHHHHHHHHHcCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003082 560 GSGNVEGALQIL-KIMREDGMSPDVV----AYTTAIKVCVRSKRLK-QAFSLFEEMKHYQIQPNLVTYITLLRARSRYGS 633 (850)
Q Consensus 560 ~~g~~~~A~~l~-~~m~~~g~~pd~~----ty~~li~~~~~~g~~~-~A~~l~~~m~~~g~~p~~~t~~~li~a~~~~g~ 633 (850)
....+++..... ++|.+.++ |+.. .|+.++++---+.+-+ -|.+.++. ..+|..|+.++|..|+
T Consensus 267 ~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalrh---------lK~yaPLL~af~s~g~ 336 (412)
T KOG2297|consen 267 EEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALRH---------LKQYAPLLAAFCSQGQ 336 (412)
T ss_pred cCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHHH---------HHhhhHHHHHHhcCCh
Confidence 334455544444 45555554 4433 5777766543332211 12233333 3477888888888888
Q ss_pred hHH
Q 003082 634 LHE 636 (850)
Q Consensus 634 ~~~ 636 (850)
.+.
T Consensus 337 sEL 339 (412)
T KOG2297|consen 337 SEL 339 (412)
T ss_pred HHH
Confidence 654
No 351
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=58.20 E-value=33 Score=35.34 Aligned_cols=52 Identities=13% Similarity=0.119 Sum_probs=31.0
Q ss_pred HHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003082 198 VQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKK 249 (850)
Q Consensus 198 ~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 249 (850)
+.-|-++|.+++|+..|... |.+.+.+.+-..+|.+..++..|..=.+..+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34455666677776666442 55666666666666666666666554444443
No 352
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=58.08 E-value=61 Score=31.47 Aligned_cols=53 Identities=8% Similarity=0.060 Sum_probs=24.4
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003082 555 IDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEE 608 (850)
Q Consensus 555 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~ 608 (850)
++.+.+.+.+.+|+.+..+-++.. +-|..+-..+++.||-.|++++|..-++-
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l 60 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNL 60 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHH
Confidence 334444455555555554444431 12333334455555555555555444443
No 353
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=57.91 E-value=2.2e+02 Score=28.97 Aligned_cols=137 Identities=16% Similarity=0.213 Sum_probs=79.2
Q ss_pred CCcCHHHHHHHHHhhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh-hcCCcccCHh
Q 003082 287 VTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL-GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE-AKGVLKLDVF 364 (850)
Q Consensus 287 ~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~-g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~-~~g~~~~d~~ 364 (850)
++.|...+|+|+.-...++++--+-+++..+. |-.--...+-.+..-||+.++.+.+.+..++..+.. ..| .+.|+.
T Consensus 77 ikfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg-~KiDv~ 155 (412)
T COG5187 77 IKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTG-LKIDVF 155 (412)
T ss_pred eehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc-cchhhH
Confidence 34566677777765444443332333333322 223335567778889999999999988876654422 233 555654
Q ss_pred HHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 365 TYST-IVKVFADAKWWQMALKVKEDMLSAGVTPNTI----TWSSLINACANAGLVEQAMHLFEEMLQ 426 (850)
Q Consensus 365 ty~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----ty~~li~~~~~~g~~~~A~~l~~~m~~ 426 (850)
..-+ |.-.|....-.++-++..+.|.+.|..-+.. +|--+-. ....++.+|-.+|.+...
T Consensus 156 l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~--m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 156 LCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFK--MMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHH--HHHHhhHHHHHHHHHHhc
Confidence 3222 2223555556788888889999888754332 3332221 123457777777776654
No 354
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=57.79 E-value=1.1e+02 Score=25.59 Aligned_cols=87 Identities=16% Similarity=0.170 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003082 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEE 608 (850)
Q Consensus 529 ~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~ 608 (850)
.++|..|-+.+...+-. ...+--+-+..+...|++++|..+.+.+ +.||...|-.|-. .+.|..+++..-+-+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 46777777766654322 2233334455677888888888877766 4788888866654 467777777777777
Q ss_pred HHHCCCCCCHHHHHH
Q 003082 609 MKHYQIQPNLVTYIT 623 (850)
Q Consensus 609 m~~~g~~p~~~t~~~ 623 (850)
|...| .|...+|.+
T Consensus 94 la~sg-~p~lq~Faa 107 (115)
T TIGR02508 94 LAASG-DPRLQTFVA 107 (115)
T ss_pred HHhCC-CHHHHHHHH
Confidence 77766 355544443
No 355
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=57.28 E-value=95 Score=29.90 Aligned_cols=79 Identities=13% Similarity=0.045 Sum_probs=60.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHhCCH
Q 003082 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA---GCEPNSQCCNILLQACVEACQF 449 (850)
Q Consensus 373 ~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~~~~~ll~~~~~~g~~ 449 (850)
+.+.|+ ++|.+.|-.+...+.--++..-..|...|. ..+.++++.++....+. +-.+|+..+.+|...|.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 444454 578888888877766556666666666555 56889999998888763 3478899999999999999999
Q ss_pred HHHH
Q 003082 450 DRAF 453 (850)
Q Consensus 450 ~~A~ 453 (850)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 9884
No 356
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=57.17 E-value=26 Score=24.32 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=18.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC
Q 003082 226 NFVREFGKKRDLVSALRAYDASKKHL 251 (850)
Q Consensus 226 ~li~~~~~~g~~~~A~~~~~~m~~~g 251 (850)
.|..+|...|+.+.|..++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46677777788888888887777543
No 357
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=56.78 E-value=22 Score=24.71 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=23.7
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhc
Q 003082 76 DMASKLAKDGRLEEFAMIVESVVVSE 101 (850)
Q Consensus 76 ~l~~~l~~~g~~~~A~~l~~~~~~~~ 101 (850)
.|+.+|...|+.+.|..++++++..+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 58899999999999999999999764
No 358
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=56.68 E-value=87 Score=30.92 Aligned_cols=76 Identities=11% Similarity=-0.018 Sum_probs=40.0
Q ss_pred hcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcC
Q 003082 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK 204 (850)
Q Consensus 125 ~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (850)
...++++|+..|.+++ -+.|....+ +-+-+..+.+..+++.+.+--.+.++.. |+.+...+-++..+...
T Consensus 22 ~~k~y~~ai~~y~raI--~~nP~~~~Y------~tnralchlk~~~~~~v~~dcrralql~--~N~vk~h~flg~~~l~s 91 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAI--CINPTVASY------YTNRALCHLKLKHWEPVEEDCRRALQLD--PNLVKAHYFLGQWLLQS 91 (284)
T ss_pred chhhhchHHHHHHHHH--hcCCCcchh------hhhHHHHHHHhhhhhhhhhhHHHHHhcC--hHHHHHHHHHHHHHHhh
Confidence 4467888999888888 667765321 2222222335666666665555444432 44443334344444433
Q ss_pred CChHHH
Q 003082 205 PDVNLA 210 (850)
Q Consensus 205 ~~~~~A 210 (850)
..+++|
T Consensus 92 ~~~~ea 97 (284)
T KOG4642|consen 92 KGYDEA 97 (284)
T ss_pred ccccHH
Confidence 333333
No 359
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=55.66 E-value=17 Score=21.71 Aligned_cols=29 Identities=14% Similarity=0.108 Sum_probs=25.2
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 003082 72 DYYADMASKLAKDGRLEEFAMIVESVVVS 100 (850)
Q Consensus 72 ~~~~~l~~~l~~~g~~~~A~~l~~~~~~~ 100 (850)
..+..++..+...|++++|...|+..++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35678889999999999999999988875
No 360
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=55.11 E-value=1.3e+02 Score=32.71 Aligned_cols=54 Identities=20% Similarity=0.214 Sum_probs=23.8
Q ss_pred HcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003082 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394 (850)
Q Consensus 336 ~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~ 394 (850)
..|+++.+...+....+. +.....+-..+++...+.|++++|..+-+-|+...+
T Consensus 335 ~lg~ye~~~~~~s~~~~~-----~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ei 388 (831)
T PRK15180 335 HLGYYEQAYQDISDVEKI-----IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEI 388 (831)
T ss_pred HhhhHHHHHHHhhchhhh-----hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcccc
Confidence 344454444444433321 222333444444444455555555555544444433
No 361
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=54.16 E-value=42 Score=26.70 Aligned_cols=49 Identities=12% Similarity=0.108 Sum_probs=37.8
Q ss_pred hcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHH
Q 003082 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLM 178 (850)
Q Consensus 125 ~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~ 178 (850)
.+.+-++|+..+.++++.--.+. .-+.++..++..+++.|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~-----~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDRE-----DRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888899999999997533332 24777888888899999999888764
No 362
>PRK09687 putative lyase; Provisional
Probab=53.75 E-value=2.7e+02 Score=28.71 Aligned_cols=233 Identities=9% Similarity=-0.012 Sum_probs=114.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCC----HHHHHHHHHHHHHCCCCC
Q 003082 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW----WQMALKVKEDMLSAGVTP 396 (850)
Q Consensus 321 ~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~----~~~A~~l~~~m~~~g~~p 396 (850)
.+|..+....+.++...|..+ +......+.+ .+|...-...+.+++..|+ .+++...+..+... .|
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~-------~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~ 103 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQD-VFRLAIELCS-------SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DK 103 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcch-HHHHHHHHHh-------CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CC
Confidence 345656666666666666432 2222222221 2455555556666666665 24566666665333 34
Q ss_pred CHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCc
Q 003082 397 NTITWSSLINACANAGL-----VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED 471 (850)
Q Consensus 397 ~~~ty~~li~~~~~~g~-----~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~ 471 (850)
+...-...+.++...+. ...+...+..... .++..+-...+.++.+.++ +++...+-.+...
T Consensus 104 d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d--------- 170 (280)
T PRK09687 104 SACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD--------- 170 (280)
T ss_pred CHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---------
Confidence 55555555555554432 1223333333322 3355555556666666665 3444444433321
Q ss_pred cCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhc---cHHHHHHHHHHHHHcCCCCCH
Q 003082 472 YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT---DYYRVKALMNEMRTVGLSPNH 548 (850)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~---~~~~a~~l~~~m~~~g~~p~~ 548 (850)
+|...-...+.+++. +...+...+..+.. .+|.
T Consensus 171 -----------------------------------------~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~ 206 (280)
T PRK09687 171 -----------------------------------------PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNE 206 (280)
T ss_pred -----------------------------------------CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCCh
Confidence 222222233333332 12234444433332 3566
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003082 549 ISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRAR 628 (850)
Q Consensus 549 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~ 628 (850)
.+-...+.++++.|+ ..|...+-+..+.+ +. .-..+.++...|.. +|...+.++.+. .||...-...+.+|
T Consensus 207 ~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~~--~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 207 EIRIEAIIGLALRKD-KRVLSVLIKELKKG---TV--GDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHHHHHHccCC-hhHHHHHHHHHcCC---ch--HHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 666667777777776 34555555554432 21 23566666777764 566666666642 34555555555554
Q ss_pred H
Q 003082 629 S 629 (850)
Q Consensus 629 ~ 629 (850)
.
T Consensus 278 ~ 278 (280)
T PRK09687 278 K 278 (280)
T ss_pred h
Confidence 3
No 363
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=53.52 E-value=2.9 Score=38.10 Aligned_cols=76 Identities=12% Similarity=0.155 Sum_probs=44.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003082 554 LIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGS 633 (850)
Q Consensus 554 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~~~g~ 633 (850)
+|..|.+.+.......+++.+...+..-+....+.++..|++.++.++..++++... ..-...+++.|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-------ccCHHHHHHHHHhcch
Confidence 455566666667777777777765545566677777777777766666666665211 1223345666666666
Q ss_pred hHH
Q 003082 634 LHE 636 (850)
Q Consensus 634 ~~~ 636 (850)
+++
T Consensus 86 ~~~ 88 (143)
T PF00637_consen 86 YEE 88 (143)
T ss_dssp HHH
T ss_pred HHH
Confidence 555
No 364
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=53.42 E-value=94 Score=30.24 Aligned_cols=55 Identities=11% Similarity=-0.037 Sum_probs=23.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 003082 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387 (850)
Q Consensus 328 ~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~ 387 (850)
+.-++.+.+.+++.+|.....+-.+. -+-|..+-..++..||-.|+|++|..-++
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVka-----kPtda~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKA-----KPTDAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhc-----CCccccchhHHHHHHhhcchHHHHHHHHH
Confidence 33444455555555555444333320 12233334444445555555555544333
No 365
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=53.12 E-value=1.4e+02 Score=25.36 Aligned_cols=81 Identities=9% Similarity=-0.077 Sum_probs=49.5
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHH
Q 003082 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYK 313 (850)
Q Consensus 234 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~ 313 (850)
....++|..+.+.+...+. -...+--+-+..+.+.|+|++|+. . ......||...|-+|-....|-.+.+...+.
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl--~--~~~~~~pdL~p~~AL~a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALL--L--PQCHCYPDLEPWAALCAWKLGLASALESRLT 93 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHH--H--HTTS--GGGHHHHHHHHHHCT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHH--h--cccCCCccHHHHHHHHHHhhccHHHHHHHHH
Confidence 3467788888888877543 222222233345778899999922 1 2233468888888888888887777777777
Q ss_pred HHHHcC
Q 003082 314 NMQKLG 319 (850)
Q Consensus 314 ~m~~~g 319 (850)
++-..|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 776555
No 366
>COG3825 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.84 E-value=1.4e+02 Score=30.51 Aligned_cols=59 Identities=15% Similarity=0.310 Sum_probs=42.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003082 604 SLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEW 666 (850)
Q Consensus 604 ~l~~~m~~~g~~p~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~~g~~p~~~~~~~li~~~ 666 (850)
.+|.++....+..+...|-.|+.++-+. +.+. -++.|..+.+.-+.||...+..+=..+
T Consensus 4 ~ff~~lr~A~vpvs~re~llL~egl~~~--v~~~--~ld~Fy~LaraaLvkde~~ldkfd~~f 62 (393)
T COG3825 4 CFFNELRAARVPVSVREYLLLLEGLKQT--VVEY--DLDLFYYLARAALVKDERHLDKFDQAF 62 (393)
T ss_pred HHHhHhhhcccccccchHHHHHHHHhhh--hhhh--hhHHHHHHHHHhcCccHHHHHHHHHHH
Confidence 4677888888888888999999887653 2222 267788888888888888766554433
No 367
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=52.59 E-value=8 Score=23.40 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=9.7
Q ss_pred ccccchHHHHHhhhccC
Q 003082 832 VPKKSLHHWLQRRVGST 848 (850)
Q Consensus 832 ~~~~~~~~~~~~~~~~~ 848 (850)
.++.||.+.|++|..++
T Consensus 3 aRK~SLqRFLeKRK~R~ 19 (27)
T PF09425_consen 3 ARKASLQRFLEKRKDRL 19 (27)
T ss_dssp ---HHHHHHHHHH----
T ss_pred hHHHHHHHHHHHHHHhh
Confidence 36889999999998775
No 368
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=51.19 E-value=2.9e+02 Score=28.32 Aligned_cols=61 Identities=15% Similarity=0.128 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 003082 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (850)
Q Consensus 400 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 461 (850)
+++.....|..+|.+.+|..+.+..+.-. +.+...+-.++..+...|+--.|..-++.+..
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34555678889999999999999888764 56777888999999999998777777766643
No 369
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=49.11 E-value=1e+02 Score=22.45 Aligned_cols=31 Identities=13% Similarity=0.022 Sum_probs=24.2
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhcCChhhHh
Q 003082 76 DMASKLAKDGRLEEFAMIVESVVVSEGNVSKFA 108 (850)
Q Consensus 76 ~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~ 108 (850)
.++-++.+.|+|+.|....+.+++. +|+.-+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Q 36 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEI--EPDNRQ 36 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH--TTS-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhh--CCCcHH
Confidence 4677789999999999999999999 565433
No 370
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=48.88 E-value=62 Score=22.91 Aligned_cols=27 Identities=4% Similarity=0.026 Sum_probs=10.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003082 597 KRLKQAFSLFEEMKHYQIQPNLVTYIT 623 (850)
Q Consensus 597 g~~~~A~~l~~~m~~~g~~p~~~t~~~ 623 (850)
|-+.++..++++|.+.|+.-+...|..
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~~l~~~ 42 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISPKLIEE 42 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCHHHHHH
Confidence 333344444444444444433333333
No 371
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.76 E-value=1.7e+02 Score=33.27 Aligned_cols=92 Identities=10% Similarity=-0.023 Sum_probs=63.0
Q ss_pred HHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHH
Q 003082 120 IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ 199 (850)
Q Consensus 120 ~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (850)
.+...+..+|..++++|....+. +..|.. +-...-.....|..|.+..+.+.|.+++++..+.. |..+..-..+..
T Consensus 361 A~~~F~~~~Y~~s~~~y~~Sl~~-i~~D~~-~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d--~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 361 AKKLFKMEKYVVSIRFYKLSLKD-IISDNY-SDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD--RQSPLCQLLMLQ 436 (872)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh-ccchhh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc--cccHHHHHHHHH
Confidence 44456789999999999988853 333332 22223344456777888899999999999887654 556666666777
Q ss_pred HHHcCCChHHHHHHhh
Q 003082 200 LCVNKPDVNLAIRYAC 215 (850)
Q Consensus 200 ~~~~~~~~~~A~~~~~ 215 (850)
+.+..+...+|+....
T Consensus 437 ~~~~E~~Se~AL~~~~ 452 (872)
T KOG4814|consen 437 SFLAEDKSEEALTCLQ 452 (872)
T ss_pred HHHHhcchHHHHHHHH
Confidence 7777777777776543
No 372
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=48.51 E-value=1.7e+02 Score=28.84 Aligned_cols=97 Identities=12% Similarity=-0.021 Sum_probs=53.4
Q ss_pred hhcCChHHHHHHHHHHHHhc----CChhhHhhhhHHHHHHHHHHHhhhcCchh-------HHHHHHHHHHHcCCCCcccc
Q 003082 82 AKDGRLEEFAMIVESVVVSE----GNVSKFASMLSLEMVASGIVKSIREGRID-------CVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 82 ~~~g~~~~A~~l~~~~~~~~----~~p~~~~~~~~~~~~~~~~~~~~~~g~~~-------~A~~~l~~~~~~~~~p~~~~ 150 (850)
.....+++|+..|.-++-.. .++. ....++.++...|-..|+.+ .|++.|.++.+..-.|....
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s-----~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~ 162 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQIKKEKPS-----KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGM 162 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHH-----HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCc
Confidence 34466788888777665443 1222 22444455556666667644 45666666665443333211
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCC
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (850)
... .++.-++....+.|+.++|.+.|.++...+
T Consensus 163 ~~~--~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 163 DEA--TLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred hHH--HHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 111 222223444456788888888888887654
No 373
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=48.45 E-value=1.1e+02 Score=31.94 Aligned_cols=111 Identities=10% Similarity=0.089 Sum_probs=77.3
Q ss_pred hhhcccc-----CCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhc-CChhhHhhhhHHHHHHHHHHHhhhcCchhHH
Q 003082 59 LLSTVRR-----DLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSE-GNVSKFASMLSLEMVASGIVKSIREGRIDCV 132 (850)
Q Consensus 59 ~l~~l~~-----~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A 132 (850)
.|+++.. +|+..+..|..-++.|-+..+|.+|...|...++.. .+|+- ...++.+=..+...-|++..|
T Consensus 64 ~LqslK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dl-----navLY~NRAAa~~~l~NyRs~ 138 (390)
T KOG0551|consen 64 CLQSLKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDL-----NAVLYTNRAAAQLYLGNYRSA 138 (390)
T ss_pred HHHHhhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccH-----HHHHHhhHHHHHHHHHHHHHH
Confidence 4555543 455567888888999999999999999999998765 34432 233344434444566888888
Q ss_pred HHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHH
Q 003082 133 VGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLE 182 (850)
Q Consensus 133 ~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~ 182 (850)
+.=...++ .+.|+. .-.++..+..+....++.+|....+..+
T Consensus 139 l~Dcs~al--~~~P~h------~Ka~~R~Akc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 139 LNDCSAAL--KLKPTH------LKAYIRGAKCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHH--hcCcch------hhhhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 88877777 667875 4455655555667778888888777654
No 374
>PHA02875 ankyrin repeat protein; Provisional
Probab=47.48 E-value=1.8e+02 Score=31.99 Aligned_cols=13 Identities=23% Similarity=0.253 Sum_probs=11.0
Q ss_pred hHHHHHHHHHhhh
Q 003082 767 LEVKDAITKLLQD 779 (850)
Q Consensus 767 ~~v~~~v~~~l~~ 779 (850)
.++|..|.+.|.+
T Consensus 392 ~Eik~~Il~~l~~ 404 (413)
T PHA02875 392 HEIKYLILEKIGN 404 (413)
T ss_pred HHHHHHHHHHhcc
Confidence 6799999999965
No 375
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=47.28 E-value=62 Score=24.44 Aligned_cols=45 Identities=7% Similarity=0.075 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003082 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (850)
Q Consensus 340 ~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~ 390 (850)
++...++++.+.. ...|-.-.-.+|.+|...|++++|.+.++++.
T Consensus 6 ~~~~~~~~~~lR~------~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 6 LEELEELIDSLRA------QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444445554443 23444444556666777777777776666654
No 376
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=46.44 E-value=1.8e+02 Score=25.29 Aligned_cols=69 Identities=20% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHH---HhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHH
Q 003082 73 YYADMASKLAKDGRLEEFAMIVESVV---VSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (850)
Q Consensus 73 ~~~~l~~~l~~~g~~~~A~~l~~~~~---~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~ 141 (850)
.+..|..++...|+|++++.-.+..+ ..+.+.....--+-+..+-+-..++-..|+.++|+..|+.+-+
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
No 377
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=46.31 E-value=66 Score=26.64 Aligned_cols=63 Identities=13% Similarity=0.049 Sum_probs=39.8
Q ss_pred hhhcCchhHHHHHHHHHHHcCCCCcccc-chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCC
Q 003082 123 SIREGRIDCVVGVLKKLNELGVAPLELF-DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (850)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (850)
.++.|++.+|++.+.+..+....-.... .......+++.+......|++++|+..+++.++..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3478999999888877765422222111 00112235555666678899999999998876543
No 378
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=45.13 E-value=1.6e+02 Score=32.00 Aligned_cols=58 Identities=14% Similarity=0.135 Sum_probs=36.4
Q ss_pred HHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHh--hhhcCcHHHHHHHHHHHHh
Q 003082 120 IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQR--LLDSGEVEMFVGLMEVLEE 183 (850)
Q Consensus 120 ~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~--~~~~g~~~~A~~~~~~~~~ 183 (850)
+..+...+++..|..+|+.+... +.++.. +..+..+|.. +.+..++.+|.+.++....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~-----~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREE-----YQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhh-----HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33455778888888888888764 444322 3444444443 3566777788888777654
No 379
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=44.94 E-value=68 Score=25.55 Aligned_cols=51 Identities=6% Similarity=-0.007 Sum_probs=40.6
Q ss_pred HhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHH
Q 003082 81 LAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVL 136 (850)
Q Consensus 81 l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l 136 (850)
+-.....++|+.....+++...++. ..+..+++++.+++..|++.+++++-
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~-----~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDRE-----DRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477889999999999998865543 23667888899999999999888764
No 380
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=43.87 E-value=3.1e+02 Score=26.88 Aligned_cols=31 Identities=10% Similarity=-0.081 Sum_probs=23.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLS 252 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 252 (850)
...+.++....+.|++++|.+.|..+...+-
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 3455677888888999999999988887643
No 381
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=43.23 E-value=1e+02 Score=33.45 Aligned_cols=28 Identities=11% Similarity=0.071 Sum_probs=22.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKK 249 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 249 (850)
.+++-++-+|.-.++|.+|.++|..++-
T Consensus 165 s~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 165 STYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888888999999999887653
No 382
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=42.92 E-value=2.3e+02 Score=29.50 Aligned_cols=110 Identities=10% Similarity=0.085 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCcC----HHH
Q 003082 223 LFCNFVREFGKKRDLVSALRAYDASKKH----LSSPNMYICRTIIDV-CGICGDYMKSRAIYEDLRSQNVTLN----IYV 293 (850)
Q Consensus 223 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~pd----~~t 293 (850)
++-.....||+-|+-+.|++.+..-.+. |.+.|+..+-.-+.. |....-..+.++..+.+.+.|...+ ..+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003082 294 FNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLK 332 (850)
Q Consensus 294 ~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~ 332 (850)
|..+-....+++.+|-.+|-+....--.-...+|..++.
T Consensus 186 Y~Gly~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~ 224 (393)
T KOG0687|consen 186 YQGLYCMSVRNFKEAADLFLDSVSTFTSYELMSYETFVR 224 (393)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHcccccceecccHHHHHH
No 383
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=42.37 E-value=1.2e+02 Score=29.22 Aligned_cols=52 Identities=10% Similarity=-0.038 Sum_probs=32.8
Q ss_pred cCCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 560 GSGNVEGALQILKIMRE-DGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (850)
Q Consensus 560 ~~g~~~~A~~l~~~m~~-~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 611 (850)
..++.+......+.+.+ ....|+...|..++.++...|+.++|.++.+++..
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444444333332 22467777777777888888888888777777765
No 384
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=41.74 E-value=1.6e+02 Score=25.93 Aligned_cols=60 Identities=13% Similarity=0.277 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003082 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (850)
Q Consensus 381 ~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~ 441 (850)
+..+-++.+...++.|+......-+++|-+.+++..|.++|+-++.+ +.+....|-.+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
Confidence 45566677777888999999999999999999999999999888754 3444445655553
No 385
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=41.56 E-value=5.8e+02 Score=29.03 Aligned_cols=190 Identities=13% Similarity=0.085 Sum_probs=120.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCc
Q 003082 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGN 475 (850)
Q Consensus 396 p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~ 475 (850)
++..+|..-++--.+.|+.+.+..+|+...-- |.-=...|--.+.-....|+.+-|..++..-.+--.
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~----------- 362 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHV----------- 362 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC-----------
Confidence 35678888888888899999988888887532 111112233333333444777777766654322110
Q ss_pred hhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCCCHH-HHHHH
Q 003082 476 TDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHI-SWTIL 554 (850)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~a~~l~~~m~~~g~~p~~~-ty~~l 554 (850)
.-.|....+.+.+.-+-++...|..+++.+...- |+.. .-..-
T Consensus 363 ----------------------------------k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~ 406 (577)
T KOG1258|consen 363 ----------------------------------KKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRK 406 (577)
T ss_pred ----------------------------------CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHH
Confidence 1267777788888888889999999999888763 5433 22333
Q ss_pred HHHHHcCCCHHHHHH---HHHHHHHCCCCCCHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003082 555 IDACGGSGNVEGALQ---ILKIMREDGMSPDVVAYTTAIKV-----CVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLR 626 (850)
Q Consensus 555 i~~~~~~g~~~~A~~---l~~~m~~~g~~pd~~ty~~li~~-----~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~ 626 (850)
+....+.|+.+.+.. ++....+... +..+.+.+.-- +.-.++.+.|..++.+|.+. +.++...|..+++
T Consensus 407 ~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~ 483 (577)
T KOG1258|consen 407 INWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIR 483 (577)
T ss_pred HhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHH
Confidence 555667888888873 3333332211 22222222222 33368899999999999884 5678888999998
Q ss_pred HHHhcCChHH
Q 003082 627 ARSRYGSLHE 636 (850)
Q Consensus 627 a~~~~g~~~~ 636 (850)
-+...+...+
T Consensus 484 ~~~~~~~~~e 493 (577)
T KOG1258|consen 484 FELIQPSGRE 493 (577)
T ss_pred HHHhCCcchh
Confidence 8877776554
No 386
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=41.37 E-value=3.3e+02 Score=27.25 Aligned_cols=59 Identities=5% Similarity=-0.101 Sum_probs=39.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh
Q 003082 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC-GDYMKSRAIYEDLRS 284 (850)
Q Consensus 226 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~ 284 (850)
.++..+.+.+++++++..+.++...+...+..--|.|-.+|-.. |....+++++..+..
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 46777888899999999999999887766766666666665332 555566666665543
No 387
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=41.18 E-value=1.4e+02 Score=33.89 Aligned_cols=78 Identities=19% Similarity=0.244 Sum_probs=58.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHH--HHHHHHH-HHHCCCCCCHHHHHHHHHH
Q 003082 553 ILIDACGGSGNVEGALQILKIMRED--GMSPDVVAYTTAIKVCVRSKRLKQ--AFSLFEE-MKHYQIQPNLVTYITLLRA 627 (850)
Q Consensus 553 ~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~ty~~li~~~~~~g~~~~--A~~l~~~-m~~~g~~p~~~t~~~li~a 627 (850)
+|+.+|...|++-.+.++++..... |-+.=...||..|+.+.+.|.++- ..+-..+ +....+.-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 8999999999999999999999863 444446678999999999997653 2222333 3335677789999988887
Q ss_pred HHh
Q 003082 628 RSR 630 (850)
Q Consensus 628 ~~~ 630 (850)
-..
T Consensus 113 sln 115 (1117)
T COG5108 113 SLN 115 (1117)
T ss_pred hcC
Confidence 554
No 388
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=40.44 E-value=2e+02 Score=23.70 Aligned_cols=31 Identities=16% Similarity=0.093 Sum_probs=22.9
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCC
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (850)
.+....++..+...|++++|++.+-.+++..
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 5566667777788899999999888887664
No 389
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=39.82 E-value=8.1e+02 Score=30.21 Aligned_cols=311 Identities=11% Similarity=0.057 Sum_probs=153.5
Q ss_pred HHhhhcCchhHHHHHHHHHHHcCCCCccc-cchhhhHHHHHHHHhhhhcC---cHHHHHHHHHHHHhCCCCCCCcccHHH
Q 003082 121 VKSIREGRIDCVVGVLKKLNELGVAPLEL-FDGSGFKLLKNECQRLLDSG---EVEMFVGLMEVLEEFRLPVKELDEEFR 196 (850)
Q Consensus 121 ~~~~~~g~~~~A~~~l~~~~~~~~~p~~~-~~~~~~~~l~~~~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~ 196 (850)
.+++....+++|+..|+++..+ -|..- -+...+.+=+.+......+| .+++|+.-|+.+... | .....+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~ 555 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRES--FPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG---V--GAPLEY 555 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhc--CCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC---C--CCchHH
Confidence 4567889999999999999854 44321 11122222222222223333 477888888877542 2 233566
Q ss_pred HHHHH--HcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-
Q 003082 197 IVQLC--VNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC- 269 (850)
Q Consensus 197 l~~~~--~~~~~~~~A~~~~~~----~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~- 269 (850)
+++++ .+.|++++-++.+.. .|..+.... |=+ .-.-++.+.... ....+|.-++-+....
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 622 (932)
T PRK13184 556 LGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISR-LRD--------HLVYRLHESLYK----HRREALVFMLLALWIAP 622 (932)
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHH-HHH--------HHHHHHHHHHHH----HHHHHHHHHHHHHHhCc
Confidence 77664 567777766654432 222221100 000 001111222211 1122233222222211
Q ss_pred --CCHHHHHHHHHHHHhCC-------CCcCHH-----HHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003082 270 --GDYMKSRAIYEDLRSQN-------VTLNIY-----VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335 (850)
Q Consensus 270 --g~~~~A~~~~~~m~~~g-------~~pd~~-----t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~ 335 (850)
-...+-..+|+.+..+- +.+... -+..++....|..-.-.++|+..... +|..+.+...-..|
T Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 699 (932)
T PRK13184 623 EKISSREEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDL---RDYRALADIFYVAC 699 (932)
T ss_pred ccccchHHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhc---ccHHHHHHHHHHHH
Confidence 12223344555544321 111111 13444444556655566777777653 46667777777778
Q ss_pred HcCChHHHHHHHHHHHHhhhcCCcccCH--------hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHH
Q 003082 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDV--------FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI--TWSSLI 405 (850)
Q Consensus 336 ~~g~~~~A~~i~~~m~~~~~~g~~~~d~--------~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--ty~~li 405 (850)
..|.++-+.+..+.+......-...-+. ..|-.-+.++.....++++.+.+... .|... .+..++
T Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 774 (932)
T PRK13184 700 DLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNT-----DPTLILYAFDLFA 774 (932)
T ss_pred HhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhC-----CHHHHHHHHHHHH
Confidence 9999998888777665421110011111 11222244455555666666544432 33333 333333
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 003082 406 NACANAGLVEQAMHLFEEMLQAGCEPNS---QCCNILLQACVEACQFDRAFRLFRSWT 460 (850)
Q Consensus 406 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~~~~~ll~~~~~~g~~~~A~~l~~~m~ 460 (850)
.-+.-.++.+....+.+.+.+.- .+.. ......|.+|.-..++++|-+++....
T Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (932)
T PRK13184 775 IQALLDEEGESIIQLLQLIYDYV-SEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYP 831 (932)
T ss_pred HHHHHhccchHHHHHHHHHHhcc-CChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCC
Confidence 33334455555555555554432 2222 223556788888999999999997654
No 390
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=39.55 E-value=3.1e+02 Score=27.30 Aligned_cols=40 Identities=0% Similarity=-0.262 Sum_probs=21.8
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHH
Q 003082 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNL 209 (850)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 209 (850)
..+++.|+..|.+.+..+ |..+..+.+-+-.+.+..+++.
T Consensus 23 ~k~y~~ai~~y~raI~~n--P~~~~Y~tnralchlk~~~~~~ 62 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICIN--PTVASYYTNRALCHLKLKHWEP 62 (284)
T ss_pred hhhhchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhhhhhh
Confidence 356777777776666544 6555444444444444444433
No 391
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=39.43 E-value=3.6e+02 Score=27.57 Aligned_cols=17 Identities=6% Similarity=-0.185 Sum_probs=8.2
Q ss_pred HHHHHHcCChHHHHHHH
Q 003082 331 LKACCLAGNTVLAQEIY 347 (850)
Q Consensus 331 l~~~~~~g~~~~A~~i~ 347 (850)
|.+++..++|.++....
T Consensus 90 IQALAEmnrWreVLsWv 106 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWV 106 (309)
T ss_pred HHHHHHHhhHHHHHHHH
Confidence 44555555555444433
No 392
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=39.36 E-value=96 Score=21.95 Aligned_cols=33 Identities=9% Similarity=0.176 Sum_probs=21.4
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003082 559 GGSGNVEGALQILKIMREDGMSPDVVAYTTAIK 591 (850)
Q Consensus 559 ~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~ 591 (850)
-+.|-++++..++++|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 445666667777777777776666666665554
No 393
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=39.27 E-value=3.7e+02 Score=28.22 Aligned_cols=62 Identities=18% Similarity=0.104 Sum_probs=31.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHH--HHHHHHHhcCCHHHHHHHHHHHHH
Q 003082 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS--TIVKVFADAKWWQMALKVKEDMLS 391 (850)
Q Consensus 329 ~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~--~li~~~~~~g~~~~A~~l~~~m~~ 391 (850)
.++...-+.++.++|.++++++...-... -.|+.+.|. .+...+...|+.+++.+++++..+
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~-~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEY-KEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34444555567777777777666533222 234444332 223334445555555555555444
No 394
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=39.21 E-value=5.6e+02 Score=28.19 Aligned_cols=53 Identities=11% Similarity=-0.054 Sum_probs=24.1
Q ss_pred HHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003082 198 VQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKH 250 (850)
Q Consensus 198 ~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 250 (850)
...+.+.|.|+.+....... ...+.+.-.++....+.|++++|..+-+.|+..
T Consensus 330 ~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ 386 (831)
T PRK15180 330 SVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSN 386 (831)
T ss_pred HHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcc
Confidence 33444455555554443221 122233334445555555555555555555443
No 395
>PF13934 ELYS: Nuclear pore complex assembly
Probab=38.94 E-value=4e+02 Score=26.41 Aligned_cols=119 Identities=15% Similarity=0.102 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHH
Q 003082 130 DCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNL 209 (850)
Q Consensus 130 ~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 209 (850)
..+.+-|.... ++.+. +-..+..+.. .+.+++++|++.+-.. .. .......++.++...|+.+.
T Consensus 63 ~~~~~~Fa~~f--~ip~~-------~~~~~~g~W~-LD~~~~~~A~~~L~~p---s~---~~~~~~~Il~~L~~~~~~~l 126 (226)
T PF13934_consen 63 SELAESFARAF--GIPPK-------YIKFIQGFWL-LDHGDFEEALELLSHP---SL---IPWFPDKILQALLRRGDPKL 126 (226)
T ss_pred ccHHHHHHHHh--CCCHH-------HHHHHHHHHH-hChHhHHHHHHHhCCC---CC---CcccHHHHHHHHHHCCChhH
Confidence 34555555555 66664 3444444443 4778999999887422 11 13345578888888899999
Q ss_pred HHHHhhhCCCCcchH---HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003082 210 AIRYACIVPRADILF---CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI 268 (850)
Q Consensus 210 A~~~~~~~p~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 268 (850)
|+.+++...+..... ..++.. ..++.+.+|...-....+. -....+..++..+..
T Consensus 127 AL~y~~~~~p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~---~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 127 ALRYLRAVGPPLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDE---LRRRLFEQLLEHCLE 184 (226)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchh---hhHHHHHHHHHHHHH
Confidence 999988765443333 222333 5567788887655443321 112345555555543
No 396
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=38.86 E-value=56 Score=33.53 Aligned_cols=45 Identities=22% Similarity=0.376 Sum_probs=28.6
Q ss_pred CCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003082 581 PDVVA-YTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLL 625 (850)
Q Consensus 581 pd~~t-y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 625 (850)
||..+ |+..|..-.+.|++++|++++++.++.|+.--..||-.-+
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 44433 5577777777777777777777777777665555554433
No 397
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.72 E-value=7.3e+02 Score=29.34 Aligned_cols=152 Identities=14% Similarity=0.069 Sum_probs=81.2
Q ss_pred HHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHH
Q 003082 120 IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ 199 (850)
Q Consensus 120 ~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (850)
+..+++.+.+++|+++-+... |..|...+ ...-..++ -+|.-.|++++|....-.|... ....|.....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~--~~~~~~~i-~kv~~~yI---~HLl~~~~y~~Aas~~p~m~gn-----~~~eWe~~V~ 431 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI--GNEERFVI-KKVGKTYI---DHLLFEGKYDEAASLCPKMLGN-----NAAEWELWVF 431 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc--CCccccch-HHHHHHHH---HHHHhcchHHHHHhhhHHHhcc-----hHHHHHHHHH
Confidence 445668899999999877666 55553211 11122333 3445679999999888887643 3444655555
Q ss_pred HHHcCCChHHHHHHhhhCCC--CcchHHHHHHHHHhcCCh---HHHHHHHHHHHhC------CC-------CCCHHHHHH
Q 003082 200 LCVNKPDVNLAIRYACIVPR--ADILFCNFVREFGKKRDL---VSALRAYDASKKH------LS-------SPNMYICRT 261 (850)
Q Consensus 200 ~~~~~~~~~~A~~~~~~~p~--~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~------g~-------~p~~~~~~~ 261 (850)
.+...++......+.-..|+ ....|.-++..|.. .+. -+.++.|..+.=. -. .-+...-..
T Consensus 432 ~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~ 510 (846)
T KOG2066|consen 432 KFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEV 510 (846)
T ss_pred HhccccccchhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHH
Confidence 55555555443333222222 22445555555554 221 1222211111000 00 012233344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 003082 262 IIDVCGICGDYMKSRAIYEDLR 283 (850)
Q Consensus 262 li~~~~~~g~~~~A~~~~~~m~ 283 (850)
|+..|...+++.+|++++-...
T Consensus 511 La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 511 LAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHccChHHHHHHHHhcc
Confidence 7778888888888888887655
No 398
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=38.66 E-value=32 Score=30.45 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=15.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHH
Q 003082 640 CLAVYQDMWKAGYKANDTYLKELIE 664 (850)
Q Consensus 640 a~~l~~~M~~~g~~p~~~~~~~li~ 664 (850)
|..+|..|.+.|-.||+ |+.|+.
T Consensus 114 aY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 114 AYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred HHHHHHHHHhCCCCCcc--HHHHHH
Confidence 66677777777777775 455554
No 399
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=38.53 E-value=6.4e+02 Score=28.69 Aligned_cols=111 Identities=14% Similarity=0.040 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHH-HHHcCCChH
Q 003082 130 DCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ-LCVNKPDVN 208 (850)
Q Consensus 130 ~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~ 208 (850)
+.+..+|..++ +--| .++..+..-+..-.+.|..+.+.++|++-++.- |.+...|...+. ++...|+.+
T Consensus 62 ~~~r~~y~~fL--~kyP------l~~gyW~kfA~~E~klg~~~~s~~Vfergv~ai--p~SvdlW~~Y~~f~~n~~~d~~ 131 (577)
T KOG1258|consen 62 DALREVYDIFL--SKYP------LCYGYWKKFADYEYKLGNAENSVKVFERGVQAI--PLSVDLWLSYLAFLKNNNGDPE 131 (577)
T ss_pred HHHHHHHHHHH--hhCc------cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHhccCCCHH
Confidence 45555666666 2233 346666666655567788888999998877642 455555554433 334566766
Q ss_pred HHHHHhhhCCC-------CcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003082 209 LAIRYACIVPR-------ADILFCNFVREFGKKRDLVSALRAYDASKKH 250 (850)
Q Consensus 209 ~A~~~~~~~p~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 250 (850)
.....|+.+.. +...|...|..-..++++.....+|+++++.
T Consensus 132 ~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 132 TLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 66666655411 2245666677667788888888888888773
No 400
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=38.49 E-value=3.6e+02 Score=25.68 Aligned_cols=41 Identities=10% Similarity=-0.114 Sum_probs=25.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003082 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270 (850)
Q Consensus 227 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 270 (850)
.+-.|.+.|.+++|.+++++.... |+......-+....+.+
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~K 157 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHcc
Confidence 456778888888888888887763 44444444444444443
No 401
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=38.24 E-value=5.4e+02 Score=27.69 Aligned_cols=55 Identities=11% Similarity=0.061 Sum_probs=35.4
Q ss_pred CChHHHHHHHHHHHHhcCChhhHhhhh-----HHHHHHHHHHHhhhcCchhHHHHHHHHHH
Q 003082 85 GRLEEFAMIVESVVVSEGNVSKFASML-----SLEMVASGIVKSIREGRIDCVVGVLKKLN 140 (850)
Q Consensus 85 g~~~~A~~l~~~~~~~~~~p~~~~~~~-----~~~~~~~~~~~~~~~g~~~~A~~~l~~~~ 140 (850)
..|+++...|..++... +|+....++ .+..+-.+...+..+|+...|.+++++++
T Consensus 8 ~~Y~~~q~~F~~~v~~~-Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 8 KAYQEAQEQFYAAVQSH-DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred HHHHHHHHHHHHHHHcc-CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34566666777666665 665533222 23344445556668999999999998885
No 402
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=37.05 E-value=84 Score=23.71 Aligned_cols=25 Identities=12% Similarity=0.101 Sum_probs=13.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 003082 586 YTTAIKVCVRSKRLKQAFSLFEEMK 610 (850)
Q Consensus 586 y~~li~~~~~~g~~~~A~~l~~~m~ 610 (850)
.-.+|.+|...|++++|.++.+++.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3345566666666666666665554
No 403
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=36.98 E-value=1.2e+02 Score=22.15 Aligned_cols=36 Identities=17% Similarity=0.080 Sum_probs=22.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003082 225 CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTI 262 (850)
Q Consensus 225 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 262 (850)
+.+..++.+.|+++.|.+..+.+++. +|+-.-...|
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L 40 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHH
Confidence 44666777888888888888888773 4654433333
No 404
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=36.71 E-value=1.2e+02 Score=33.99 Aligned_cols=98 Identities=9% Similarity=0.049 Sum_probs=57.1
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCChHHHHHH
Q 003082 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRA 243 (850)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~p~~~~~~~~li~~~~~~g~~~~A~~~ 243 (850)
+|....|...+....-.. +....+..-.++..+.+.|....|-.++.+ ..+.+.++..++.+|....+.+.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~-p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLA-PLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccC-hhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 455555555554433211 011223344455555555544444443322 234457788889999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHH
Q 003082 244 YDASKKHLSSPNMYICRTIIDVCG 267 (850)
Q Consensus 244 ~~~m~~~g~~p~~~~~~~li~~~~ 267 (850)
|.+..+... .+...-+.|...-|
T Consensus 699 ~~~a~~~~~-~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 699 FRQALKLTT-KCPECENSLKLIRC 721 (886)
T ss_pred HHHHHhcCC-CChhhHHHHHHHHH
Confidence 998877532 35666666665433
No 405
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=36.70 E-value=2.4e+02 Score=23.18 Aligned_cols=56 Identities=11% Similarity=0.013 Sum_probs=31.4
Q ss_pred hCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 003082 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGD 271 (850)
Q Consensus 216 ~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~ 271 (850)
.-|.+...-..+...+...|++++|++.+-.+.+..... +...-..|+..+.-.|.
T Consensus 17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 17 ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 345555566667777777777777777777776654322 33445555555555554
No 406
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=36.47 E-value=2.3e+02 Score=26.92 Aligned_cols=55 Identities=18% Similarity=0.199 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHH
Q 003082 87 LEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (850)
Q Consensus 87 ~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~ 141 (850)
++.|+.+++.+.+.-..|....-.+..-.....+..+.+.|.+++|.++|++..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 5677777777776643443322233223334456678899999999999999984
No 407
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=35.88 E-value=3.9e+02 Score=25.37 Aligned_cols=57 Identities=11% Similarity=0.061 Sum_probs=26.5
Q ss_pred HHHHHHHHHcCCCCC-HHHHHHHHHHHHHcC----C-------hHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHH
Q 003082 309 LEVYKNMQKLGVMAD-MASYNILLKACCLAG----N-------TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373 (850)
Q Consensus 309 ~~l~~~m~~~g~~pd-~~t~~~Ll~~~~~~g----~-------~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~ 373 (850)
+.-|++.+.. .|+ ..++..+-.+|...+ + +++|.+.|+.... ..|+..+|+.-+...
T Consensus 55 isK~eeAL~I--~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~------~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 55 ISKFEEALKI--NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD------EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHH---TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH------H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHhc--CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh------cCCCcHHHHHHHHHH
Confidence 3445554443 343 345555555554432 2 3444444444444 356666666665554
No 408
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=35.59 E-value=2.2e+02 Score=23.30 Aligned_cols=68 Identities=19% Similarity=0.154 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 003082 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454 (850)
Q Consensus 381 ~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~ 454 (850)
.+.++++.+.+.|+- +......+-.+-...|+.+.|.++++.+. .| | ..|...++++...|.-+-|.+
T Consensus 20 ~~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~--~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 20 KTRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK--E--GWFSKFLQALRETEHHELARE 87 (88)
T ss_pred hHHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--C--cHHHHHHHHHHHcCchhhhhc
Confidence 345667777777643 44444444333345678888888888877 43 2 357777888777777665543
No 409
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=35.07 E-value=3.8e+02 Score=25.68 Aligned_cols=62 Identities=11% Similarity=-0.044 Sum_probs=31.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHH-HHHhcCC--HHHHHHHHHHHHHC
Q 003082 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK-VFADAKW--WQMALKVKEDMLSA 392 (850)
Q Consensus 329 ~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~-~~~~~g~--~~~A~~l~~~m~~~ 392 (850)
...-.....|++++|.+-++.+.+..++ ++--...|..+.. ++|..+. +-+|.-++......
T Consensus 34 ~~aI~~~H~~~~eeA~~~l~~a~~~v~~--Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 34 GEAIFLLHRGDFEEAEKKLKKASEAVEK--LKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHH--HHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 3344445667777777777666543211 2222334555554 4555543 44555555555443
No 410
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=33.44 E-value=8.2e+02 Score=28.38 Aligned_cols=139 Identities=12% Similarity=0.049 Sum_probs=71.2
Q ss_pred CCCcCHHHHHHHHHHH--hc--cHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 003082 510 SFKPTTTTYNILMKAC--CT--DYYRVKALMNEMRTVGL---SPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPD 582 (850)
Q Consensus 510 ~~~p~~~t~~~li~~~--~~--~~~~a~~l~~~m~~~g~---~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 582 (850)
..++++..+.++--+. ++ +.+-+..+++.+.+++- .-.-.-|-.|.-+..-.|+-+.+..+.+-....+ .|=
T Consensus 500 ~~~~ev~~~aslsLG~IfvGscn~dvts~ilqtlmekse~El~d~~~RFL~LGL~llflgkqe~~d~~~e~~~~i~-~~~ 578 (878)
T KOG2005|consen 500 KSPMEVVAFASLSLGMIFVGSCNEDVTSSILQTLMEKSETELEDQWFRFLALGLALLFLGKQESVDAVVETIKAIE-GPI 578 (878)
T ss_pred CCchhHHHHHHhhcceeEEecCChHHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhcccchHHHHHHHHHHhh-hHH
Confidence 3455666666665543 23 56666666655544322 2222234455445444555455555555554432 233
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHH--HHHHHHHCCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHHHHHcC
Q 003082 583 VVAYTTAIKVCVRS--KRLKQAFS--LFEEMKHYQIQPNLVT---YITLLRARSRYGSLHEVQQCLAVYQDMWKAG 651 (850)
Q Consensus 583 ~~ty~~li~~~~~~--g~~~~A~~--l~~~m~~~g~~p~~~t---~~~li~a~~~~g~~~~a~~a~~l~~~M~~~g 651 (850)
....++++..|+-. |++-...+ +...--+.. -+... +..|--|+..-|.-=.++-+++.|..|...|
T Consensus 579 ~~~~~~lv~~caYaGTGnvl~Iq~q~ll~~cgE~~--~~~e~~~~~avLgiAliAMgeeig~eM~lR~f~h~l~yg 652 (878)
T KOG2005|consen 579 RKHESILVKSCAYAGTGNVLKIQSQLLLSFCGEHD--ADLESEQELAVLGIALIAMGEEIGSEMVLRHFGHLLHYG 652 (878)
T ss_pred HHHHHHHHHHhhccccCceEEechhhhhhhcCCCc--cchhhhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHcC
Confidence 44456666666554 44433322 111111111 12222 5555566666777555677888888888776
No 411
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=32.93 E-value=2.2e+02 Score=35.50 Aligned_cols=114 Identities=11% Similarity=-0.044 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...|..|+..+-+.|++++|+..-....-......+..+.-....+.++.......++...|+..+.++...-.-.....
T Consensus 973 ~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~ 1052 (1236)
T KOG1839|consen 973 ASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGED 1052 (1236)
T ss_pred HHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCC
Confidence 56778888899999999999998766643322222233333333444444444466677888888887766421111111
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhC
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~ 184 (850)
++....+..++-..+...++++.|+++++.....
T Consensus 1053 hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1053 HPPTALSFINLELLLLGVEEADTALRYLESALAK 1086 (1236)
T ss_pred CCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 2222222233333333457888888888877653
No 412
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=32.83 E-value=2.6e+02 Score=24.63 Aligned_cols=42 Identities=19% Similarity=0.355 Sum_probs=20.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003082 569 QILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (850)
Q Consensus 569 ~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~ 610 (850)
+-++.+....+.|+.......+.+|-+.+++..|.++|+-.+
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 333444444445555555555555555555555555555444
No 413
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=31.90 E-value=1.7e+02 Score=24.11 Aligned_cols=60 Identities=13% Similarity=0.046 Sum_probs=35.9
Q ss_pred hhcCChHHHHHHHHHHHHhcCChhhHh--hhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHc
Q 003082 82 AKDGRLEEFAMIVESVVVSEGNVSKFA--SMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (850)
Q Consensus 82 ~~~g~~~~A~~l~~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~ 142 (850)
.+.|+|.+|.+.+.+.......-.... ...... +..........|++++|+..++++++.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~a-ll~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYA-LLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 567899999777777665431111000 011122 222333455789999999999999864
No 414
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=31.19 E-value=1.3e+02 Score=32.89 Aligned_cols=97 Identities=16% Similarity=0.028 Sum_probs=59.5
Q ss_pred hhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCc----chHHHHHHHHHhcCChHHHH
Q 003082 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD----ILFCNFVREFGKKRDLVSAL 241 (850)
Q Consensus 166 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~----~~~~~li~~~~~~g~~~~A~ 241 (850)
.....++.|+.++.+.++.. |+.+..+..-..++++.+++..|+.=+..+...+ ..|..-+.++.+.+++.+|+
T Consensus 15 l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred cccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHH
Confidence 35678899999999888765 7666666666677777777777766554443322 23333344555556666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHH
Q 003082 242 RAYDASKKHLSSPNMYICRTIIDVC 266 (850)
Q Consensus 242 ~~~~~m~~~g~~p~~~~~~~li~~~ 266 (850)
..|+.... +.|+..-....++-|
T Consensus 93 ~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 93 LDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHhhh--cCcCcHHHHHHHHHH
Confidence 66666554 346555555555444
No 415
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=31.04 E-value=4e+02 Score=28.70 Aligned_cols=148 Identities=16% Similarity=0.050 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhh-------cCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHH
Q 003082 129 IDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLD-------SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (850)
Q Consensus 129 ~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~-------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (850)
..+....|+.....+-... ......-+..+-+...+.+ ....-+|+-+++..+... |.+...-..+++.|
T Consensus 151 ~~~~~~~y~~~l~~~~~l~-te~~~~d~~~lla~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s--~~n~~~~LlLvrlY 227 (365)
T PF09797_consen 151 AQELLKLYQESLSLGKDLK-TESQPADELALLAAHSLLDLYSKTKDSEYLLQAIALLEHALKKS--PHNYQLKLLLVRLY 227 (365)
T ss_pred HHHHHHHHHhhCccccccc-cccCchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHcC--CCcHHHHHHHHHHH
Q ss_pred HcCCChHHHHHHhhhCCCCcchHHHHHHHHHh----cCChHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003082 202 VNKPDVNLAIRYACIVPRADILFCNFVREFGK----KRDLVSAL-RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276 (850)
Q Consensus 202 ~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~----~g~~~~A~-~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 276 (850)
...|....|...|..+.-..+-+.+|...... .|.+..+. ..++.....-..-...+-..++.+| +.|.|.+..
T Consensus 228 ~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~~~~r~~~~~~~~~~~~~~~~~~~~fy~~~~~~~~e~i~~af-~~gsysKi~ 306 (365)
T PF09797_consen 228 SLLGAGSLALEHYESLDIKNIQLDTLGHLILDRLSTLGPFKSAPENLLENALKFYDNSEKETPEFIIKAF-ENGSYSKIE 306 (365)
T ss_pred HHcCCHHHHHHHHHhcChHHHHHHHhHHHHHHHHhccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCchhHH
Q ss_pred HHHH
Q 003082 277 AIYE 280 (850)
Q Consensus 277 ~~~~ 280 (850)
++.+
T Consensus 307 ef~~ 310 (365)
T PF09797_consen 307 EFIE 310 (365)
T ss_pred HHHH
No 416
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=30.20 E-value=89 Score=32.10 Aligned_cols=43 Identities=16% Similarity=0.212 Sum_probs=33.9
Q ss_pred CCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003082 545 SPNHI-SWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYT 587 (850)
Q Consensus 545 ~p~~~-ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~ 587 (850)
.||.. -|+..|..-.+.|++++|+.+++|.++.|+.--..+|-
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 35554 56789999999999999999999999999765444443
No 417
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=29.92 E-value=6.8e+02 Score=27.06 Aligned_cols=61 Identities=5% Similarity=-0.117 Sum_probs=39.6
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHH
Q 003082 77 MASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (850)
Q Consensus 77 l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~ 138 (850)
.+..+...++|..|..+|+++......++.......+..+..++ .++..-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y-~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAY-LHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHH-HHHHccCHHHHHHHHhh
Confidence 34467788999999999999998754444322222233333333 24566778888888873
No 418
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.61 E-value=1e+03 Score=28.25 Aligned_cols=149 Identities=11% Similarity=0.005 Sum_probs=74.2
Q ss_pred HHHHHcCCChHHHHHHhhhCCCCc------chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003082 198 VQLCVNKPDVNLAIRYACIVPRAD------ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD 271 (850)
Q Consensus 198 ~~~~~~~~~~~~A~~~~~~~p~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 271 (850)
++-+.+.+.+++|+...+..+... ...-..|..+.-.|++++|-...-.|.. -+..-|..-+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccc
Confidence 344455566666666655543322 2344566666677777777766666654 244445555555555544
Q ss_pred HHHHH------------HHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHH
Q 003082 272 YMKSR------------AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQK---LGVMADMASYNILLKACCL 336 (850)
Q Consensus 272 ~~~A~------------~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~---~g~~pd~~t~~~Ll~~~~~ 336 (850)
..... .+|+.+.-.-+.++...|..++.-+.+++=.+..+.+.... ..-. +...--.|+..|..
T Consensus 439 l~~Ia~~lPt~~~rL~p~vYemvLve~L~~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se-~~~L~e~La~LYl~ 517 (846)
T KOG2066|consen 439 LTDIAPYLPTGPPRLKPLVYEMVLVEFLASDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSE-STALLEVLAHLYLY 517 (846)
T ss_pred cchhhccCCCCCcccCchHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhcc-chhHHHHHHHHHHH
Confidence 33221 12222222222344455555554443332222222222111 1111 22233348888999
Q ss_pred cCChHHHHHHHHHHH
Q 003082 337 AGNTVLAQEIYGEVK 351 (850)
Q Consensus 337 ~g~~~~A~~i~~~m~ 351 (850)
.+++..|..++-...
T Consensus 518 d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 518 DNKYEKALPIYLKLQ 532 (846)
T ss_pred ccChHHHHHHHHhcc
Confidence 999999998876543
No 419
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=29.56 E-value=2.8e+02 Score=32.14 Aligned_cols=76 Identities=17% Similarity=0.179 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 003082 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (850)
Q Consensus 309 ~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~ 388 (850)
....+.++.+-...+...-.-++..|.+.|-.+.|.++.+.+-... ....-|..-+.-+.++|+...+..+-+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~------~~~~~~g~AL~~~~ra~d~~~v~~i~~~ 463 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRL------LKEGRYGEALSWFIRAGDYSLVTRIADR 463 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH------HHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------HHCCCHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3444444433223355556677888888888888888887665421 1233455566666677776665555555
Q ss_pred HH
Q 003082 389 ML 390 (850)
Q Consensus 389 m~ 390 (850)
+.
T Consensus 464 ll 465 (566)
T PF07575_consen 464 LL 465 (566)
T ss_dssp --
T ss_pred HH
Confidence 44
No 420
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=29.17 E-value=4.1e+02 Score=27.53 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=36.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 226 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
.++..+.+.++.....+.+..+.. ...-...+..+...|+|..|++++.+..+
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 355666666676666666666643 34455566667788888888888877654
No 421
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=28.90 E-value=47 Score=29.47 Aligned_cols=33 Identities=6% Similarity=0.062 Sum_probs=24.6
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003082 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVC 266 (850)
Q Consensus 232 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 266 (850)
.+-|.-.+|-.+|..|++.|-+|| .|+.|+...
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 344556679999999999998887 567777643
No 422
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=28.79 E-value=1.2e+02 Score=33.21 Aligned_cols=87 Identities=10% Similarity=-0.026 Sum_probs=59.6
Q ss_pred HHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHH
Q 003082 120 IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ 199 (850)
Q Consensus 120 ~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (850)
...++..+.++.|+.+|.+++ .+.|+...+ +.+-...+.+.+.+..|+.=+...++.. |.....|..-+.
T Consensus 11 an~~l~~~~fd~avdlysKaI--~ldpnca~~------~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~ 80 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAI--ELDPNCAIY------FANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGT 80 (476)
T ss_pred HhhhcccchHHHHHHHHHHHH--hcCCcceee------echhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccH
Confidence 334557899999999999999 567865322 2222344567888888887777766654 665555666666
Q ss_pred HHHcCCChHHHHHHhhh
Q 003082 200 LCVNKPDVNLAIRYACI 216 (850)
Q Consensus 200 ~~~~~~~~~~A~~~~~~ 216 (850)
++...+.+.+|+..|+.
T Consensus 81 a~m~l~~~~~A~~~l~~ 97 (476)
T KOG0376|consen 81 AVMALGEFKKALLDLEK 97 (476)
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 77777777777776654
No 423
>PHA03100 ankyrin repeat protein; Provisional
Probab=28.78 E-value=3e+02 Score=30.89 Aligned_cols=74 Identities=18% Similarity=0.251 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCCCCHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHH
Q 003082 533 KALMNEMRTVGLSPNHI---SWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAY--TTAIKVCVRSKRLKQAFSLFE 607 (850)
Q Consensus 533 ~~l~~~m~~~g~~p~~~---ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty--~~li~~~~~~g~~~~A~~l~~ 607 (850)
.++.+.+.+.|..++.. -.+.| ...+..|+.+ +++.+.+.|..++.... .+-+...++.|+. ++++
T Consensus 230 ~~iv~~Ll~~g~din~~d~~g~TpL-~~A~~~~~~~----iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~----~iv~ 300 (480)
T PHA03100 230 LEVVNYLLSYGVPINIKDVYGFTPL-HYAVYNNNPE----FVKYLLDLGANPNLVNKYGDTPLHIAILNNNK----EIFK 300 (480)
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCHH----HHHHHHHcCCCCCccCCCCCcHHHHHHHhCCH----HHHH
Confidence 44555566666655432 23333 3345556644 44555666665554321 1122223344544 3455
Q ss_pred HHHHCCCC
Q 003082 608 EMKHYQIQ 615 (850)
Q Consensus 608 ~m~~~g~~ 615 (850)
.+.+.|..
T Consensus 301 ~Ll~~g~~ 308 (480)
T PHA03100 301 LLLNNGPS 308 (480)
T ss_pred HHHhcCCC
Confidence 55555543
No 424
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=28.77 E-value=20 Score=25.47 Aligned_cols=20 Identities=30% Similarity=0.728 Sum_probs=16.2
Q ss_pred ccchhhccccccchHHHHHh
Q 003082 824 PKILQRLKVPKKSLHHWLQR 843 (850)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~ 843 (850)
+.+.+.+-|+++|++.|+++
T Consensus 21 ~~ia~~lgvs~~Tv~~w~kr 40 (50)
T PF13384_consen 21 REIAKRLGVSRSTVYRWIKR 40 (50)
T ss_dssp HHHHHHHTS-HHHHHHHHT-
T ss_pred HHHHHHHCcCHHHHHHHHHH
Confidence 66778899999999999988
No 425
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=28.61 E-value=6.7e+02 Score=26.43 Aligned_cols=85 Identities=12% Similarity=0.148 Sum_probs=58.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHH-H
Q 003082 368 TIVKVFADAKWWQMALKVKEDMLSA---GVTPNTITWS--SLINACANAGLVEQAMHLFEEMLQ-----AGCEPNSQC-C 436 (850)
Q Consensus 368 ~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~ty~--~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~~-~ 436 (850)
.++...-+.++.++|++.++++.+. --.|+.+.|. .+...+...|+..++.+++++..+ .|++|++.+ |
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 3444455667899999999998753 2356777664 455667788999999999999887 578887765 5
Q ss_pred HHHHHHHH-HhCCHHHH
Q 003082 437 NILLQACV-EACQFDRA 452 (850)
Q Consensus 437 ~~ll~~~~-~~g~~~~A 452 (850)
..+-.-|. +.|++...
T Consensus 160 Y~lssqYyk~~~d~a~y 176 (380)
T KOG2908|consen 160 YSLSSQYYKKIGDFASY 176 (380)
T ss_pred HHHHHHHHHHHHhHHHH
Confidence 55555444 45665544
No 426
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=28.55 E-value=2.8e+02 Score=23.74 Aligned_cols=26 Identities=12% Similarity=0.307 Sum_probs=20.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 586 YTTAIKVCVRSKRLKQAFSLFEEMKH 611 (850)
Q Consensus 586 y~~li~~~~~~g~~~~A~~l~~~m~~ 611 (850)
|..|+.-|...|..++|++++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 77788888888888888888887766
No 427
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=28.54 E-value=6e+02 Score=25.29 Aligned_cols=99 Identities=13% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCC-----------CCCHHHHHHHH
Q 003082 558 CGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH-YQI-----------QPNLVTYITLL 625 (850)
Q Consensus 558 ~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~-----------~p~~~t~~~li 625 (850)
|.+..+..--.++++-....++.-+..-...+|.. ..|+...|+.-++.-.. .|. .|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiift--a~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFT--AQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhh--ccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003082 626 RARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKEL 662 (850)
Q Consensus 626 ~a~~~~g~~~~a~~a~~l~~~M~~~g~~p~~~~~~~l 662 (850)
.+|.... .++|++++.++.+.|+.|.+..-+.+
T Consensus 247 ~~~~~~~----~~~A~~il~~lw~lgysp~Dii~~~F 279 (333)
T KOG0991|consen 247 QACLKRN----IDEALKILAELWKLGYSPEDIITTLF 279 (333)
T ss_pred HHHHhcc----HHHHHHHHHHHHHcCCCHHHHHHHHH
No 428
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=28.15 E-value=5.4e+02 Score=24.67 Aligned_cols=84 Identities=6% Similarity=0.014 Sum_probs=52.7
Q ss_pred cHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC--------------CCCHHH
Q 003082 193 EEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLS--------------SPNMYI 258 (850)
Q Consensus 193 ~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--------------~p~~~~ 258 (850)
.+..++..-++....+++-+.+- ..+--+++..|.+..+|.+.+++++.|.+..+ .+--..
T Consensus 109 PFceFAetV~k~~q~~e~dK~~L-----GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqi 183 (233)
T PF14669_consen 109 PFCEFAETVCKDPQNDEVDKTLL-----GRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQI 183 (233)
T ss_pred CHHHHHHHHhcCCccchhhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhh
Confidence 34445555444444444333221 13445678888888899999999888765421 122345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 003082 259 CRTIIDVCGICGDYMKSRAIYED 281 (850)
Q Consensus 259 ~~~li~~~~~~g~~~~A~~~~~~ 281 (850)
-|.-...+.+.|..+.|+.++++
T Consensus 184 vn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 184 VNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHcCCchHHHHHHhc
Confidence 66677778888888888888874
No 429
>PRK10941 hypothetical protein; Provisional
Probab=28.11 E-value=2.5e+02 Score=28.70 Aligned_cols=46 Identities=15% Similarity=0.131 Sum_probs=28.8
Q ss_pred hhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHH
Q 003082 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIR 212 (850)
Q Consensus 165 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 212 (850)
+.+.++++.|+.+.+.++... |+++..+..-+-.|.+.|.++.|..
T Consensus 191 ~~~~~~~~~AL~~~e~ll~l~--P~dp~e~RDRGll~~qL~c~~~A~~ 236 (269)
T PRK10941 191 LMEEKQMELALRASEALLQFD--PEDPYEIRDRGLIYAQLDCEHVALS 236 (269)
T ss_pred HHHcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 445666666666666666554 6665555556666666666666654
No 430
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.84 E-value=9.1e+02 Score=27.15 Aligned_cols=37 Identities=14% Similarity=0.220 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 003082 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433 (850)
Q Consensus 397 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 433 (850)
+...+..++.++...+....|+.++++|.+.|..|..
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~ 283 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYK 283 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHH
Confidence 4444555555554444455666666666666654443
No 431
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=27.36 E-value=7e+02 Score=27.05 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=12.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC
Q 003082 228 VREFGKKRDLVSALRAYDASKKH 250 (850)
Q Consensus 228 i~~~~~~g~~~~A~~~~~~m~~~ 250 (850)
+..+.+.++|..|.++|+.+...
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r 160 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR 160 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh
Confidence 33444556666666666665554
No 432
>PRK11619 lytic murein transglycosylase; Provisional
Probab=27.27 E-value=1.1e+03 Score=27.83 Aligned_cols=115 Identities=7% Similarity=-0.092 Sum_probs=61.5
Q ss_pred ChHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHH
Q 003082 304 DLKFTLEVYKNMQKLG-VMAD--MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380 (850)
Q Consensus 304 ~~~~a~~l~~~m~~~g-~~pd--~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~ 380 (850)
+.+.|..++..+.... ..+. ..++..+.......+...+|...++.... ...|......-+......++++
T Consensus 256 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~------~~~~~~~~e~r~r~Al~~~dw~ 329 (644)
T PRK11619 256 DAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM------RSQSTSLLERRVRMALGTGDRR 329 (644)
T ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc------ccCCcHHHHHHHHHHHHccCHH
Confidence 4555666665553322 2211 12233333333333224455555554322 1124444455555556788888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003082 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425 (850)
Q Consensus 381 ~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 425 (850)
.+...+..|-... .-...-.-.+.+++...|+.++|...|+.+.
T Consensus 330 ~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 330 GLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 8888888774422 2234445566677677788888888888874
No 433
>PHA03100 ankyrin repeat protein; Provisional
Probab=27.04 E-value=2.1e+02 Score=32.15 Aligned_cols=13 Identities=31% Similarity=0.508 Sum_probs=10.6
Q ss_pred hHHHHHHHHHhhh
Q 003082 767 LEVKDAITKLLQD 779 (850)
Q Consensus 767 ~~v~~~v~~~l~~ 779 (850)
.++|..|.+.|.+
T Consensus 453 ~Eik~~Il~~l~~ 465 (480)
T PHA03100 453 IEIKYKILEYLSN 465 (480)
T ss_pred HHHHHHHHHhCCH
Confidence 6788888888866
No 434
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=26.95 E-value=4.4e+02 Score=23.24 Aligned_cols=87 Identities=10% Similarity=0.087 Sum_probs=49.2
Q ss_pred hcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcC
Q 003082 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK 204 (850)
Q Consensus 125 ~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (850)
..+.-.....++++..+. ...+....+ =.-++.++..|++.-. ++.++|..|...++-...+
T Consensus 38 ~~~~~~~L~~lLer~~~~-f~~~~~Y~n--D~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A------------- 99 (126)
T PF08311_consen 38 SGGKQSGLLELLERCIRK-FKDDERYKN--DERYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLA------------- 99 (126)
T ss_dssp TCCCCHHHHHHHHHHHHH-HTTSGGGTT---HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBH-------------
T ss_pred CCCchhHHHHHHHHHHHH-HhhhHhhcC--CHHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHH-------------
Confidence 335555666777777653 222211111 1124555556655444 8889999888777543322
Q ss_pred CChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 003082 205 PDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDA 246 (850)
Q Consensus 205 ~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~ 246 (850)
..|..-...+...|++++|.++|..
T Consensus 100 -----------------~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 100 -----------------LFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp -----------------HHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3445556667777777777777764
No 435
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=26.95 E-value=2.9e+02 Score=30.04 Aligned_cols=110 Identities=9% Similarity=-0.078 Sum_probs=53.1
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHh-----cCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCc
Q 003082 73 YYADMASKLAKDGRLEEFAMIVESVVVS-----EGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPL 147 (850)
Q Consensus 73 ~~~~l~~~l~~~g~~~~A~~l~~~~~~~-----~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~ 147 (850)
.-..++..+....+..+-++........ +.........+..-.+..+.+.++-.|++..|+++++.+.-.....-
T Consensus 77 ~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~ 156 (404)
T PF10255_consen 77 SVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLY 156 (404)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhh
Confidence 3344455566666666665555442111 01111111222233344556777888999999999875531100000
Q ss_pred cccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHH
Q 003082 148 ELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLE 182 (850)
Q Consensus 148 ~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~ 182 (850)
....+.-.+++...+-.|.=.+|+.+|++.|..++
T Consensus 157 ~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 157 TKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred ccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00011113334444444555566666666666554
No 436
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=26.57 E-value=2.1e+02 Score=22.83 Aligned_cols=81 Identities=19% Similarity=0.212 Sum_probs=39.4
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCC
Q 003082 557 ACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLV---TYITLLRARSRYGS 633 (850)
Q Consensus 557 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~li~a~~~~g~ 633 (850)
..++.|+++-...+++ .+...+. -++.+...+..|+. ++++.+.+.|..++.. -++.|..| +..|.
T Consensus 3 ~A~~~~~~~~~~~ll~----~~~~~~~--~~~~l~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~ 71 (89)
T PF12796_consen 3 IAAQNGNLEILKFLLE----KGADINL--GNTALHYAAENGNL----EIVKLLLENGADINSQDKNGNTALHYA-AENGN 71 (89)
T ss_dssp HHHHTTTHHHHHHHHH----TTSTTTS--SSBHHHHHHHTTTH----HHHHHHHHTTTCTT-BSTTSSBHHHHH-HHTTH
T ss_pred HHHHcCCHHHHHHHHH----CcCCCCC--CCCHHHHHHHcCCH----HHHHHHHHhcccccccCCCCCCHHHHH-HHcCC
Confidence 3455666554444333 4333333 22244444566664 4455555566666543 34445544 33444
Q ss_pred hHHHHHHHHHHHHHHHcCCCCC
Q 003082 634 LHEVQQCLAVYQDMWKAGYKAN 655 (850)
Q Consensus 634 ~~~a~~a~~l~~~M~~~g~~p~ 655 (850)
. ++++-+.+.|..+|
T Consensus 72 ~-------~~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 72 L-------EIVKLLLEHGADVN 86 (89)
T ss_dssp H-------HHHHHHHHTTT-TT
T ss_pred H-------HHHHHHHHcCCCCC
Confidence 3 34455667777665
No 437
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=26.44 E-value=3.6e+02 Score=22.01 Aligned_cols=63 Identities=16% Similarity=0.190 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Q 003082 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (850)
Q Consensus 398 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 462 (850)
..+|..-++...... .+++ ++|+-....|+..|..+|.++++...-.--.+...++++.|...
T Consensus 10 ~~~~k~~~~rk~~Ls-~eE~-EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 10 AQVYKYSLRRKKVLS-AEEV-ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred HHHHHHHHHHHhccC-HHHH-HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 444544443332222 2332 77777777888888888888888777677777778888877643
No 438
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=25.88 E-value=6.5e+02 Score=26.06 Aligned_cols=112 Identities=13% Similarity=0.111 Sum_probs=60.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003082 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409 (850)
Q Consensus 330 Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~ 409 (850)
++....+.++.....+.+..+.. ...-...+..+...|++..|++++.+..+. .. +..-|+.+=+.
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~----------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c~~~L-- 169 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT----------VQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSCVRHL-- 169 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchHHHHH--
Confidence 44444455555555555555543 223445566777888888888888877642 00 00111111000
Q ss_pred HcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 003082 410 NAGLVEQAMHLFEEMLQAG-----CEPNSQCCNILLQACVEACQFDRAFRLF 456 (850)
Q Consensus 410 ~~g~~~~A~~l~~~m~~~g-----~~p~~~~~~~ll~~~~~~g~~~~A~~l~ 456 (850)
..++++.....+++.+.. ..-|+..|..++.||.-.|+...+.+-+
T Consensus 170 -~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl 220 (291)
T PF10475_consen 170 -SSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKL 220 (291)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 112333334443333321 2568888999999999999877765433
No 439
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=25.83 E-value=3.4e+02 Score=23.24 Aligned_cols=27 Identities=19% Similarity=0.482 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 400 TWSSLINACANAGLVEQAMHLFEEMLQ 426 (850)
Q Consensus 400 ty~~li~~~~~~g~~~~A~~l~~~m~~ 426 (850)
-|..|+..|...|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 388888999999999999999988876
No 440
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=25.40 E-value=7.8e+02 Score=25.54 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHH
Q 003082 549 ISWTILIDACGGSGNVEGALQI 570 (850)
Q Consensus 549 ~ty~~li~~~~~~g~~~~A~~l 570 (850)
.+|.-|+.++|..|+.+-.+-+
T Consensus 322 K~yaPLL~af~s~g~sEL~Ll~ 343 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELELLL 343 (412)
T ss_pred HhhhHHHHHHhcCChHHHHHHH
Confidence 4677788888888887765543
No 441
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=25.24 E-value=6.2e+02 Score=24.35 Aligned_cols=79 Identities=16% Similarity=0.029 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHH-HHHHcCC--HHHHH
Q 003082 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED--GMSPDVVAYTTAIK-VCVRSKR--LKQAF 603 (850)
Q Consensus 529 ~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~ty~~li~-~~~~~g~--~~~A~ 603 (850)
-+++.++-.++.. ++...-...+.|++++|..-++++.+. .++--...|..+.. ++|..+. +-+|.
T Consensus 19 REE~l~lsRei~r---------~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~ 89 (204)
T COG2178 19 REEALKLSREIVR---------LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEAT 89 (204)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHH
Confidence 3566666666554 444444556788899999888887652 12222334555555 6676654 56777
Q ss_pred HHHHHHHHCCCCCC
Q 003082 604 SLFEEMKHYQIQPN 617 (850)
Q Consensus 604 ~l~~~m~~~g~~p~ 617 (850)
-++.-.... ..|.
T Consensus 90 ~l~~~l~~~-~~ps 102 (204)
T COG2178 90 LLYSILKDG-RLPS 102 (204)
T ss_pred HHHHHHhcC-CCCC
Confidence 777766653 3344
No 442
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.36 E-value=47 Score=34.55 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=26.5
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHH
Q 003082 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIR 212 (850)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 212 (850)
+.|.+++|++.+...++.. |.....+..-.+++++.+.+..|++
T Consensus 126 n~G~~~~ai~~~t~ai~ln--p~~a~l~~kr~sv~lkl~kp~~air 169 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN--PPLAILYAKRASVFLKLKKPNAAIR 169 (377)
T ss_pred cCcchhhhhcccccccccC--CchhhhcccccceeeeccCCchhhh
Confidence 4688888888887766554 5444444444455555555555544
No 443
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=24.08 E-value=3.8e+02 Score=25.62 Aligned_cols=29 Identities=14% Similarity=-0.154 Sum_probs=12.3
Q ss_pred cCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003082 361 LDVFTYSTIVKVFADAKWWQMALKVKEDM 389 (850)
Q Consensus 361 ~d~~ty~~li~~~~~~g~~~~A~~l~~~m 389 (850)
|+..+|..++..+...|+.++|.++..++
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444444444444444444444444443
No 444
>PRK10941 hypothetical protein; Provisional
Probab=23.89 E-value=6.7e+02 Score=25.67 Aligned_cols=63 Identities=14% Similarity=-0.003 Sum_probs=48.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
....+|-.+|.+.++++.|+++.+.+....+ .+..-+.--.-.|.+.|.+..|..=++...+.
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P-~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDP-EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 3456788889999999999999999888532 34555666666788999999998888887765
No 445
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.86 E-value=2e+02 Score=34.12 Aligned_cols=43 Identities=12% Similarity=0.057 Sum_probs=18.4
Q ss_pred cCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 003082 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDA 246 (850)
Q Consensus 203 ~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~ 246 (850)
+.|+.+.|++....+.+ ...|..|+..-.++|+.+-|+-.|++
T Consensus 655 e~gnle~ale~akkldd-~d~w~rLge~Al~qgn~~IaEm~yQ~ 697 (1202)
T KOG0292|consen 655 ECGNLEVALEAAKKLDD-KDVWERLGEEALRQGNHQIAEMCYQR 697 (1202)
T ss_pred hcCCHHHHHHHHHhcCc-HHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 34444444444433321 23444444444444444444444443
No 446
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.76 E-value=1e+03 Score=27.05 Aligned_cols=75 Identities=12% Similarity=0.166 Sum_probs=46.7
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC---C----------CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003082 540 RTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDG---M----------SPDVVAYTTAIKVCVRSKRLKQAFSLF 606 (850)
Q Consensus 540 ~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g---~----------~pd~~ty~~li~~~~~~g~~~~A~~l~ 606 (850)
.+.|+..+......++.. ..|++..|..+++++...| + .++......+++++. .|+.+.++.++
T Consensus 192 ~~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~-~~d~~~~l~~~ 268 (509)
T PRK14958 192 KEENVEFENAALDLLARA--ANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA-AKAGDRLLGCV 268 (509)
T ss_pred HHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 345666665555555444 2577888888877766543 1 123333444555544 47888888888
Q ss_pred HHHHHCCCCCC
Q 003082 607 EEMKHYQIQPN 617 (850)
Q Consensus 607 ~~m~~~g~~p~ 617 (850)
++|.+.|..|.
T Consensus 269 ~~l~~~g~~~~ 279 (509)
T PRK14958 269 TRLVEQGVDFS 279 (509)
T ss_pred HHHHHcCCCHH
Confidence 88888887764
No 447
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=23.66 E-value=8.7e+02 Score=25.53 Aligned_cols=63 Identities=11% Similarity=-0.058 Sum_probs=37.1
Q ss_pred chhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHH
Q 003082 128 RIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL 200 (850)
Q Consensus 128 ~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (850)
-.+.-+.+|+++++. .|+. ..+++.......+..+.++..+.+++++... |.+...|...+..
T Consensus 46 ~~E~klsilerAL~~--np~~------~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~--~~~~~LW~~yL~~ 108 (321)
T PF08424_consen 46 LAERKLSILERALKH--NPDS------ERLLLGYLEEGEKVWDSEKLAKKWEELLFKN--PGSPELWREYLDF 108 (321)
T ss_pred HHHHHHHHHHHHHHh--CCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCChHHHHHHHHH
Confidence 355667888888865 5543 2333333333334567777777788887664 5566666544433
No 448
>PHA02875 ankyrin repeat protein; Provisional
Probab=23.10 E-value=2.8e+02 Score=30.35 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=18.6
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHHhCCHHHHHHH
Q 003082 409 ANAGLVEQAMHLFEEMLQAGCEPNSQC---CNILLQACVEACQFDRAFRL 455 (850)
Q Consensus 409 ~~~g~~~~A~~l~~~m~~~g~~p~~~~---~~~ll~~~~~~g~~~~A~~l 455 (850)
+..|+.+ +.+.+.+.|..++... ..+++...+..|+.+-+.-+
T Consensus 176 ~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~L 221 (413)
T PHA02875 176 MAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLF 221 (413)
T ss_pred HHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHH
Confidence 3445543 3344455555544322 12344433455555444333
No 449
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=23.06 E-value=1.5e+02 Score=19.55 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=18.1
Q ss_pred HHHHHHHHHhhcCChHHHHHHHH
Q 003082 73 YYADMASKLAKDGRLEEFAMIVE 95 (850)
Q Consensus 73 ~~~~l~~~l~~~g~~~~A~~l~~ 95 (850)
.+-.++-.+-..|++++|+.+|+
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 45567888899999999999955
No 450
>PF05476 PET122: PET122; InterPro: IPR008732 The nuclear PET122 gene of Saccharomyces cerevisiae encodes a mitochondrial-localised protein that activates initiation of translation of the mitochondrial mRNA from the COX3 gene, which encodes subunit III of cytochrome c oxidase [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005740 mitochondrial envelope
Probab=22.94 E-value=7.9e+02 Score=24.74 Aligned_cols=110 Identities=11% Similarity=0.067 Sum_probs=63.0
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHhcCChHH
Q 003082 559 GGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHY-Q-IQPNLVTYITLLRARSRYGSLHE 636 (850)
Q Consensus 559 ~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~-g-~~p~~~t~~~li~a~~~~g~~~~ 636 (850)
|-.|+++++++.++.+... ..|....-..+.--|+-|.++...-+|.+.... + +........-+-+.+...|+..-
T Consensus 21 CLNr~Fd~vL~~~R~~p~~--emd~~fLq~yL~~S~qwgHv~Si~yIW~k~Vmr~~~L~V~P~lLCDi~nlal~~~k~fi 98 (267)
T PF05476_consen 21 CLNREFDDVLAELRQIPVD--EMDYSFLQLYLARSCQWGHVPSIDYIWYKYVMRRKVLLVEPRLLCDIGNLALHEGKYFI 98 (267)
T ss_pred HhhhhHHHHHHHHHcCcHh--HhhHHHHHHHHHHHHHHhcchHHHHHHHHHHhhccccccChhHHHHHHHHHHhcCCCcC
Confidence 4557777777776666432 224444444455556677777777777776542 2 12233344466666667777766
Q ss_pred HHHHHHHHHHHHHcCCC-CC--HHH---HHHHHHHHHhhh
Q 003082 637 VQQCLAVYQDMWKAGYK-AN--DTY---LKELIEEWCEGV 670 (850)
Q Consensus 637 a~~a~~l~~~M~~~g~~-p~--~~~---~~~li~~~~~~~ 670 (850)
..+.+..|+.+-..+.. +. .+- .+.=|++|.+|-
T Consensus 99 p~ql~~hy~~~y~~~~~~~e~~~~~YeLlRikVE~FAkgt 138 (267)
T PF05476_consen 99 PSQLYMHYQKFYGKGTSQPEWDQYEYELLRIKVESFAKGT 138 (267)
T ss_pred HHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHHHHhcCC
Confidence 77777778777665532 21 222 233456676653
No 451
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=22.90 E-value=1.8e+02 Score=22.21 Aligned_cols=50 Identities=8% Similarity=0.143 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003082 580 SPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSR 630 (850)
Q Consensus 580 ~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~~ 630 (850)
.|+...++.++..+++..-.++++..+.++...|. .+..+|.--++.++|
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 34555667777777777777777777777777664 455555555555554
No 452
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=22.83 E-value=4.6e+02 Score=26.33 Aligned_cols=86 Identities=12% Similarity=-0.018 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-hhcCCcccCHhHHHHHHHHHHhcCCHHHHH
Q 003082 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL-EAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (850)
Q Consensus 305 ~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~-~~~g~~~~d~~ty~~li~~~~~~g~~~~A~ 383 (850)
+..|.+.|...... ..-....--+...|.+.|++++|.++|+.+... .+.|-..+...+...+..++.+.|+.++.+
T Consensus 161 L~~A~~~f~~~~~~--R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l 238 (247)
T PF11817_consen 161 LEKAYEQFKKYGQN--RMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYL 238 (247)
T ss_pred HHHHHHHHHHhccc--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHH
Q ss_pred HHHHHHHHC
Q 003082 384 KVKEDMLSA 392 (850)
Q Consensus 384 ~l~~~m~~~ 392 (850)
.+--+|...
T Consensus 239 ~~~leLls~ 247 (247)
T PF11817_consen 239 TTSLELLSR 247 (247)
T ss_pred HHHHHHhcC
No 453
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=22.46 E-value=4.5e+02 Score=30.24 Aligned_cols=73 Identities=22% Similarity=0.320 Sum_probs=50.9
Q ss_pred HHHHHHh--ccHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHcCCCHH------HHHHHHHHHHHCCCCCCHHHHHHH
Q 003082 520 ILMKACC--TDYYRVKALMNEMRTV--GLSPNHISWTILIDACGGSGNVE------GALQILKIMREDGMSPDVVAYTTA 589 (850)
Q Consensus 520 ~li~~~~--~~~~~a~~l~~~m~~~--g~~p~~~ty~~li~~~~~~g~~~------~A~~l~~~m~~~g~~pd~~ty~~l 589 (850)
++..+|. ++..++.++++.+... |-+.-...||..|+.+.+.|.++ .|.++++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7888886 4678999999988753 33334557888899999999754 3444444443 55688889888
Q ss_pred HHHHHH
Q 003082 590 IKVCVR 595 (850)
Q Consensus 590 i~~~~~ 595 (850)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 776443
No 454
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=22.33 E-value=1.7e+02 Score=28.78 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=42.4
Q ss_pred HHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcc
Q 003082 80 KLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLE 148 (850)
Q Consensus 80 ~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~ 148 (850)
.+.+.|+.+.|.++|++++.. .|....-+.....+ --+.|+.+.|...|++.+ .+.|..
T Consensus 4 ~~~~~~D~~aaaely~qal~l--ap~w~~gwfR~g~~------~ekag~~daAa~a~~~~L--~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALEL--APEWAAGWFRLGEY------TEKAGEFDAAAAAYEEVL--ELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhc--Cchhhhhhhhcchh------hhhcccHHHHHHHHHHHH--cCCccc
Confidence 456789999999999999987 55433222222222 237799999999999999 667765
No 455
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=22.29 E-value=2.1e+02 Score=21.92 Aligned_cols=51 Identities=10% Similarity=0.066 Sum_probs=31.8
Q ss_pred cccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 003082 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410 (850)
Q Consensus 359 ~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~ 410 (850)
+.|+...++-++..+++..-+++++..+.+....|.- +..+|---++.+++
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSLAR 54 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 3455566677777777777777777777777776643 55566555555554
No 456
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.23 E-value=2e+02 Score=34.11 Aligned_cols=69 Identities=10% Similarity=0.054 Sum_probs=48.3
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 003082 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDA 246 (850)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~ 246 (850)
++|+.+.|++.-.+ .++...|..|+..-..+|+.+-|+-.|+.... |.-|--.|.-.|+.++-.++-+-
T Consensus 655 e~gnle~ale~akk-------ldd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn----fekLsfLYliTgn~eKL~Km~~i 723 (1202)
T KOG0292|consen 655 ECGNLEVALEAAKK-------LDDKDVWERLGEEALRQGNHQIAEMCYQRTKN----FEKLSFLYLITGNLEKLSKMMKI 723 (1202)
T ss_pred hcCCHHHHHHHHHh-------cCcHHHHHHHHHHHHHhcchHHHHHHHHHhhh----hhheeEEEEEeCCHHHHHHHHHH
Confidence 57999999887664 35667899999999999999999888876533 22233345556666665555443
No 457
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=21.81 E-value=1.1e+02 Score=36.75 Aligned_cols=54 Identities=22% Similarity=0.343 Sum_probs=42.3
Q ss_pred hHHHHhhccchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEecCCcccccCcccchHHHHHHHHHhhh
Q 003082 711 NLAIDLRGLTKVEARIIVLAVLRMMKENYSLGVPVKDDLMIVLGPNKVNKIQAKHDLEVKDAITKLLQD 779 (850)
Q Consensus 711 ~~~~~l~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~i~~g~gk~s~~~g~~~~~v~~~v~~~l~~ 779 (850)
...+||||+...+|...+..++..-... |. ..+.||.|.|. ..||.+|.+.|..
T Consensus 704 ~~~lDL~G~~~eeA~~~l~~fl~~a~~~---g~---~~v~IIHGkGt---------G~Lr~~v~~~L~~ 757 (782)
T PRK00409 704 SLELDLRGMRYEEALERLDKYLDDALLA---GY---GEVLIIHGKGT---------GKLRKGVQEFLKK 757 (782)
T ss_pred CceEECCCCCHHHHHHHHHHHHHHHHHc---CC---CEEEEEcCCCh---------hHHHHHHHHHHcC
Confidence 3568999999999888877776555443 42 35889999874 5799999999997
No 458
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.45 E-value=1.1e+03 Score=25.72 Aligned_cols=65 Identities=14% Similarity=0.028 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003082 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391 (850)
Q Consensus 325 ~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 391 (850)
..+.-+.+-|..+|+++.|.+.|.......... +..+..|-.+|..-.-.|+|.....+..+..+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~--khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSA--KHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch--HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 346667788888899999998888765532111 12233455555555666777666666655543
No 459
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=21.05 E-value=88 Score=31.48 Aligned_cols=50 Identities=20% Similarity=0.212 Sum_probs=43.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCC
Q 003082 269 CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGV 320 (850)
Q Consensus 269 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~ 320 (850)
..+|+..+.+++..++. .|+..|-+.||-++....++..++++.|...|+
T Consensus 193 ~A~Y~~SL~~L~~~k~~--~P~i~TKSgiMlGLGEt~~Ev~e~m~DLr~~gv 242 (306)
T COG0320 193 GATYERSLSLLERAKEL--GPDIPTKSGLMVGLGETDEEVIEVMDDLRSAGV 242 (306)
T ss_pred CCcHHHHHHHHHHHHHh--CCCcccccceeeecCCcHHHHHHHHHHHHHcCC
Confidence 35799999999998876 689999999999988889999999999998885
No 460
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=20.89 E-value=9.2e+02 Score=24.79 Aligned_cols=72 Identities=14% Similarity=0.230 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCC
Q 003082 582 DVVAYTTAIKVCVRSKRLKQAFSLFEEMKH----YQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKAN 655 (850)
Q Consensus 582 d~~ty~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~~g~~p~ 655 (850)
-...+-.+..-||+.++.+.+.++.++..+ .|.+.|+ +-+.|+.-.-.|+..-+++-++..+.|.+.|..-+
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv--~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWe 189 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDV--FLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWE 189 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhh--HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHH
Confidence 345667777788888888887777665543 4555443 33344433345555667777888888888776443
No 461
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=20.62 E-value=9.4e+02 Score=28.47 Aligned_cols=45 Identities=16% Similarity=0.179 Sum_probs=28.3
Q ss_pred HHHHHHHHH-HHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 003082 531 RVKALMNEM-RTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED 577 (850)
Q Consensus 531 ~a~~l~~~m-~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 577 (850)
+....+... .+.|+..+......++... .|++..|..+++++...
T Consensus 182 eI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~ 227 (709)
T PRK08691 182 QVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIAL 227 (709)
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHh
Confidence 334444333 3457776776666666543 58888888888877653
No 462
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=20.58 E-value=1.1e+03 Score=26.15 Aligned_cols=60 Identities=10% Similarity=0.133 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH---HHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 003082 258 ICRTIIDVCGICGDYMKSRAIYED---LRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQK 317 (850)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~---m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~ 317 (850)
.+..|..+|+-+|++++|..++.. |...-+.|........|....|+...|+..+++-..
T Consensus 621 ~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~~ 683 (696)
T KOG2471|consen 621 LFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQCTH 683 (696)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhccc
Confidence 455566667777777777777733 333334444445555555566666666666655433
No 463
>PF01710 HTH_Tnp_IS630: Transposase; InterPro: IPR002622 Transposase proteins are necessary for efficient DNA transposition. This entry includes insertion sequences from Synechocystis sp. (strain PCC 6803) three of which are characterised as homologous to bacterial IS5- and IS4- and to several members of the IS630-Tc1-mariner superfamily []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=20.47 E-value=42 Score=29.35 Aligned_cols=20 Identities=25% Similarity=0.655 Sum_probs=16.4
Q ss_pred chhhccccccchHHHHHhhh
Q 003082 826 ILQRLKVPKKSLHHWLQRRV 845 (850)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~ 845 (850)
+..++.|+++|++.|++++.
T Consensus 24 aa~~F~VS~~Tv~~W~k~~~ 43 (119)
T PF01710_consen 24 AAKRFGVSRNTVYRWLKRKE 43 (119)
T ss_pred HHHHhCcHHHHHHHHHHhcc
Confidence 34678999999999999543
No 464
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.04 E-value=1.8e+03 Score=27.79 Aligned_cols=76 Identities=14% Similarity=0.134 Sum_probs=38.4
Q ss_pred HHHHHHHcCCChHHHHHHh----hhCCCC----cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003082 196 RIVQLCVNKPDVNLAIRYA----CIVPRA----DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCG 267 (850)
Q Consensus 196 ~l~~~~~~~~~~~~A~~~~----~~~p~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 267 (850)
.+++.+.+-+..+.+.++. +.+|++ ..+++++-+.....|.+.+|....-+-.. ...-......++..+.
T Consensus 988 kv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npd--serrrdcLRqlvivLf 1065 (1480)
T KOG4521|consen 988 KVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPD--SERRRDCLRQLVIVLF 1065 (1480)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCc--HHHHHHHHHHHHHHHH
Confidence 3445555555555444432 333332 24566677777777777777654332111 0111224556666666
Q ss_pred hcCCHH
Q 003082 268 ICGDYM 273 (850)
Q Consensus 268 ~~g~~~ 273 (850)
.+|.++
T Consensus 1066 ecg~l~ 1071 (1480)
T KOG4521|consen 1066 ECGELE 1071 (1480)
T ss_pred hccchH
Confidence 776654
No 465
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=20.04 E-value=3.9e+02 Score=24.03 Aligned_cols=47 Identities=13% Similarity=0.113 Sum_probs=25.3
Q ss_pred CcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhh
Q 003082 169 GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYAC 215 (850)
Q Consensus 169 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 215 (850)
.+..+-+.+++.+.+..-+-......++++-++.+.++|++++++.+
T Consensus 49 ~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd 95 (149)
T KOG3364|consen 49 EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVD 95 (149)
T ss_pred HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHH
Confidence 34556677777777522122233444555555556666665555543
Done!