Query 003082
Match_columns 850
No_of_seqs 710 out of 4152
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 12:39:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003082.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003082hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.3E-33 4.4E-38 329.1 46.3 367 221-650 200-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.5E-33 5E-38 328.6 42.1 483 66-627 79-593 (597)
3 4g26_A Pentatricopeptide repea 100.0 1.4E-30 4.8E-35 291.1 22.8 214 381-668 8-222 (501)
4 4g26_A Pentatricopeptide repea 100.0 1.3E-29 4.6E-34 283.2 25.5 206 343-631 9-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 5.5E-23 1.9E-27 225.3 45.8 293 77-459 5-297 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 5.6E-23 1.9E-27 225.2 44.9 370 125-628 11-383 (388)
7 2gw1_A Mitochondrial precursor 99.9 2.8E-19 9.7E-24 203.4 37.9 441 71-619 6-483 (514)
8 2y4t_A DNAJ homolog subfamily 99.8 1.1E-18 3.8E-23 194.9 35.7 333 59-440 15-370 (450)
9 2y4t_A DNAJ homolog subfamily 99.8 5.5E-18 1.9E-22 189.3 41.2 196 155-391 26-239 (450)
10 2gw1_A Mitochondrial precursor 99.8 1.8E-18 6.1E-23 196.8 36.7 437 155-651 6-479 (514)
11 3fp2_A TPR repeat-containing p 99.8 1.9E-18 6.4E-23 197.9 36.2 420 119-612 31-491 (537)
12 3fp2_A TPR repeat-containing p 99.8 1.2E-16 4.1E-21 182.8 44.8 325 71-426 25-406 (537)
13 3spa_A Mtrpol, DNA-directed RN 99.8 4.4E-19 1.5E-23 202.2 13.3 117 549-668 128-248 (1134)
14 3ieg_A DNAJ homolog subfamily 99.8 1.5E-15 5E-20 163.5 37.2 325 71-444 3-351 (359)
15 3spa_A Mtrpol, DNA-directed RN 99.8 8.4E-19 2.9E-23 200.0 11.6 130 321-451 124-254 (1134)
16 3ieg_A DNAJ homolog subfamily 99.7 1.5E-14 5.2E-19 155.5 39.4 296 156-462 4-335 (359)
17 1xi4_A Clathrin heavy chain; a 99.7 3.5E-12 1.2E-16 150.5 56.0 406 71-595 985-1413(1630)
18 3hym_B Cell division cycle pro 99.7 6.7E-15 2.3E-19 156.4 30.6 293 71-414 22-321 (330)
19 3hym_B Cell division cycle pro 99.7 9.3E-15 3.2E-19 155.3 31.4 289 156-450 23-322 (330)
20 1fch_A Peroxisomal targeting s 99.7 1.9E-15 6.4E-20 163.6 25.6 289 125-458 37-355 (368)
21 2ooe_A Cleavage stimulation fa 99.7 4.2E-13 1.4E-17 153.0 44.6 334 61-461 4-384 (530)
22 1xi4_A Clathrin heavy chain; a 99.7 5.4E-12 1.8E-16 148.9 53.7 310 197-637 1055-1374(1630)
23 2xm6_A Protein corresponding t 99.7 1.9E-12 6.6E-17 145.9 48.2 347 190-614 38-434 (490)
24 2ooe_A Cleavage stimulation fa 99.6 2.1E-12 7.1E-17 147.2 44.3 258 337-649 191-491 (530)
25 4eqf_A PEX5-related protein; a 99.6 1.5E-14 5.1E-19 156.5 24.5 275 71-422 65-351 (365)
26 1b89_A Protein (clathrin heavy 99.6 6.3E-15 2.2E-19 156.6 20.7 351 167-654 15-373 (449)
27 1fch_A Peroxisomal targeting s 99.6 5.7E-14 1.9E-18 151.9 28.3 96 222-352 65-160 (368)
28 2xm6_A Protein corresponding t 99.6 1.7E-11 5.8E-16 138.1 49.5 351 219-653 37-435 (490)
29 4eqf_A PEX5-related protein; a 99.6 4.2E-14 1.4E-18 152.9 26.0 256 194-458 68-352 (365)
30 3cv0_A Peroxisome targeting si 99.6 1.3E-13 4.5E-18 146.1 28.0 262 157-459 23-312 (327)
31 4g1t_A Interferon-induced prot 99.6 2E-13 6.8E-18 153.3 30.8 366 70-463 50-460 (472)
32 3mkr_A Coatomer subunit epsilo 99.6 1.5E-13 5E-18 143.1 27.2 254 79-392 7-264 (291)
33 3cv0_A Peroxisome targeting si 99.6 1.6E-13 5.5E-18 145.4 26.3 279 71-424 21-312 (327)
34 1b89_A Protein (clathrin heavy 99.6 6.1E-15 2.1E-19 156.7 10.8 279 203-637 15-301 (449)
35 4g1t_A Interferon-induced prot 99.6 6.1E-12 2.1E-16 141.1 35.7 328 222-620 95-468 (472)
36 3mkr_A Coatomer subunit epsilo 99.6 1.1E-12 3.7E-17 136.4 26.9 269 167-456 11-288 (291)
37 2h6f_A Protein farnesyltransfe 99.5 1.7E-12 5.8E-17 139.7 21.4 201 62-282 89-302 (382)
38 2pl2_A Hypothetical conserved 99.4 2.6E-12 8.9E-17 127.4 17.8 194 71-283 5-212 (217)
39 2pl2_A Hypothetical conserved 99.4 1.9E-11 6.6E-16 121.1 23.5 201 217-460 1-212 (217)
40 2ho1_A Type 4 fimbrial biogene 99.4 1.1E-11 3.9E-16 125.7 21.9 204 65-285 31-238 (252)
41 3uq3_A Heat shock protein STI1 99.4 1E-10 3.5E-15 118.8 27.4 225 156-427 6-236 (258)
42 3uq3_A Heat shock protein STI1 99.4 6E-11 2E-15 120.6 24.7 224 222-463 6-237 (258)
43 1xnf_A Lipoprotein NLPI; TPR, 99.4 1.3E-11 4.4E-16 127.1 19.6 251 125-421 17-269 (275)
44 1xnf_A Lipoprotein NLPI; TPR, 99.4 5.4E-12 1.9E-16 129.9 16.4 249 166-456 16-269 (275)
45 3u4t_A TPR repeat-containing p 99.4 8.5E-11 2.9E-15 120.8 25.0 229 157-393 5-251 (272)
46 2vq2_A PILW, putative fimbrial 99.4 4.9E-11 1.7E-15 118.4 21.8 198 71-284 8-210 (225)
47 2h6f_A Protein farnesyltransfe 99.4 7.3E-11 2.5E-15 127.0 24.1 243 155-443 97-363 (382)
48 3sf4_A G-protein-signaling mod 99.3 5E-11 1.7E-15 130.3 22.4 319 71-450 9-364 (406)
49 1ouv_A Conserved hypothetical 99.3 5E-10 1.7E-14 115.3 28.4 145 304-464 93-253 (273)
50 2vq2_A PILW, putative fimbrial 99.3 2.5E-10 8.7E-15 113.1 24.8 167 222-427 43-211 (225)
51 4a1s_A PINS, partner of inscut 99.3 3.8E-11 1.3E-15 131.8 20.2 277 155-462 48-372 (411)
52 1ouv_A Conserved hypothetical 99.3 1.6E-09 5.3E-14 111.5 31.1 222 188-428 3-252 (273)
53 3ro2_A PINS homolog, G-protein 99.3 7.1E-11 2.4E-15 125.1 21.1 296 71-426 5-331 (338)
54 4a1s_A PINS, partner of inscut 99.3 3.1E-11 1.1E-15 132.5 18.8 296 71-427 48-372 (411)
55 2ho1_A Type 4 fimbrial biogene 99.3 7.3E-10 2.5E-14 112.3 27.6 200 324-611 37-237 (252)
56 3sf4_A G-protein-signaling mod 99.3 1.2E-10 4E-15 127.3 22.1 275 157-462 11-336 (406)
57 3ro2_A PINS homolog, G-protein 99.3 1.1E-10 3.8E-15 123.6 20.3 274 158-462 8-332 (338)
58 3e4b_A ALGK; tetratricopeptide 99.3 4.6E-09 1.6E-13 116.5 33.9 345 163-614 11-389 (452)
59 2q7f_A YRRB protein; TPR, prot 99.3 1.3E-10 4.4E-15 117.0 19.3 197 158-427 26-222 (243)
60 3e4b_A ALGK; tetratricopeptide 99.3 2.3E-09 7.9E-14 118.9 31.0 344 75-463 7-388 (452)
61 2q7f_A YRRB protein; TPR, prot 99.3 3.5E-10 1.2E-14 113.7 22.3 200 222-463 24-223 (243)
62 3u4t_A TPR repeat-containing p 99.3 4.4E-10 1.5E-14 115.3 23.0 230 194-463 6-251 (272)
63 3ulq_A Response regulator aspa 99.3 4.9E-10 1.7E-14 121.7 23.5 172 80-283 21-211 (383)
64 3nf1_A KLC 1, kinesin light ch 99.2 2.1E-10 7.3E-15 120.1 18.1 179 68-249 24-223 (311)
65 4abn_A Tetratricopeptide repea 99.2 8.8E-10 3E-14 123.1 22.9 209 171-424 84-318 (474)
66 4e6h_A MRNA 3'-END-processing 99.2 1.8E-07 6.2E-12 107.4 41.7 75 59-142 55-132 (679)
67 3vtx_A MAMA; tetratricopeptide 99.2 4.6E-10 1.6E-14 107.7 17.2 166 71-285 5-170 (184)
68 3nf1_A KLC 1, kinesin light ch 99.2 6.9E-10 2.4E-14 116.2 19.3 240 222-462 28-307 (311)
69 3vtx_A MAMA; tetratricopeptide 99.2 9.3E-10 3.2E-14 105.5 18.0 165 157-327 7-177 (184)
70 3q15_A PSP28, response regulat 99.2 3.4E-09 1.2E-13 114.8 24.6 330 71-462 10-365 (378)
71 2ond_A Cleavage stimulation fa 99.2 8.2E-09 2.8E-13 108.2 26.3 222 172-426 33-269 (308)
72 3ulq_A Response regulator aspa 99.2 3.8E-09 1.3E-13 114.7 24.2 302 231-611 22-367 (383)
73 1hz4_A MALT regulatory protein 99.1 1.7E-08 5.7E-13 109.0 27.4 290 71-389 14-319 (373)
74 4gyw_A UDP-N-acetylglucosamine 99.1 5.4E-10 1.8E-14 129.9 16.5 169 66-284 5-173 (723)
75 2ond_A Cleavage stimulation fa 99.1 1.7E-08 6E-13 105.7 26.1 214 240-463 35-271 (308)
76 4e6h_A MRNA 3'-END-processing 99.1 2.5E-06 8.6E-11 98.0 44.8 441 175-666 52-584 (679)
77 4abn_A Tetratricopeptide repea 99.1 3.6E-09 1.2E-13 118.1 20.1 201 218-460 99-319 (474)
78 1hz4_A MALT regulatory protein 99.1 2.8E-08 9.4E-13 107.3 26.3 272 162-462 21-322 (373)
79 4gyw_A UDP-N-acetylglucosamine 99.0 2.4E-09 8.1E-14 124.5 16.8 152 161-317 15-173 (723)
80 3q15_A PSP28, response regulat 99.0 1.7E-08 5.9E-13 109.2 20.4 182 73-285 103-290 (378)
81 3edt_B KLC 2, kinesin light ch 99.0 4.4E-09 1.5E-13 108.2 14.3 164 83-249 13-197 (283)
82 3as5_A MAMA; tetratricopeptide 99.0 6.6E-08 2.3E-12 92.0 21.3 163 223-426 10-172 (186)
83 3edt_B KLC 2, kinesin light ch 98.9 2E-08 6.8E-13 103.2 17.9 222 239-461 26-280 (283)
84 3as5_A MAMA; tetratricopeptide 98.9 2.6E-08 8.7E-13 94.9 17.2 154 120-284 15-172 (186)
85 1qqe_A Vesicular transport pro 98.9 2.2E-08 7.7E-13 103.9 17.8 188 67-284 33-227 (292)
86 3qky_A Outer membrane assembly 98.9 2.7E-08 9.3E-13 101.4 15.9 194 66-285 11-224 (261)
87 4i17_A Hypothetical protein; T 98.9 6.5E-08 2.2E-12 96.2 17.6 194 71-291 7-213 (228)
88 3urz_A Uncharacterized protein 98.8 1.6E-07 5.4E-12 91.9 17.2 167 71-249 4-185 (208)
89 2yhc_A BAMD, UPF0169 lipoprote 98.8 4.9E-07 1.7E-11 89.6 19.9 191 71-286 4-214 (225)
90 3urz_A Uncharacterized protein 98.7 1.2E-07 4.1E-12 92.8 14.3 151 122-284 13-185 (208)
91 2pzi_A Probable serine/threoni 98.7 5.3E-08 1.8E-12 113.8 13.8 169 82-271 402-583 (681)
92 4i17_A Hypothetical protein; T 98.7 1.1E-06 3.7E-11 87.2 21.6 193 192-427 8-209 (228)
93 4f3v_A ESX-1 secretion system 98.7 4.3E-07 1.5E-11 91.3 16.9 209 80-298 16-248 (282)
94 1qqe_A Vesicular transport pro 98.7 4.5E-07 1.5E-11 94.0 17.8 215 206-461 32-268 (292)
95 2fo7_A Synthetic consensus TPR 98.7 1.2E-06 4.1E-11 77.9 18.4 130 326-462 3-132 (136)
96 4ga2_A E3 SUMO-protein ligase 98.7 7.2E-08 2.5E-12 88.7 10.0 138 123-271 7-149 (150)
97 3qou_A Protein YBBN; thioredox 98.7 1.4E-07 4.8E-12 97.5 12.9 165 71-283 117-282 (287)
98 3mv2_B Coatomer subunit epsilo 98.6 6.2E-06 2.1E-10 84.0 24.2 177 210-392 85-282 (310)
99 3qky_A Outer membrane assembly 98.6 4.5E-07 1.5E-11 92.2 16.0 163 122-319 24-225 (261)
100 2ifu_A Gamma-SNAP; membrane fu 98.6 4.1E-07 1.4E-11 95.0 16.0 62 222-284 117-183 (307)
101 2fo7_A Synthetic consensus TPR 98.6 1.7E-06 5.8E-11 76.9 17.7 129 223-391 3-131 (136)
102 2ifu_A Gamma-SNAP; membrane fu 98.6 4.9E-07 1.7E-11 94.5 15.0 187 66-283 31-222 (307)
103 3mv2_B Coatomer subunit epsilo 98.6 1.1E-05 3.6E-10 82.3 23.9 146 308-461 85-239 (310)
104 2pzi_A Probable serine/threoni 98.6 1.9E-07 6.5E-12 109.1 12.4 165 124-300 402-577 (681)
105 2vsy_A XCC0866; transferase, g 98.6 5.1E-07 1.8E-11 103.4 15.1 150 126-286 2-158 (568)
106 4ga2_A E3 SUMO-protein ligase 98.5 1.5E-07 5E-12 86.6 7.9 142 77-236 3-149 (150)
107 3dra_A Protein farnesyltransfe 98.5 2.1E-05 7.2E-10 80.9 24.5 166 169-339 47-235 (306)
108 2r5s_A Uncharacterized protein 98.5 2E-07 6.9E-12 88.4 8.8 151 122-283 15-171 (176)
109 2qfc_A PLCR protein; TPR, HTH, 98.5 6.3E-06 2.2E-10 85.3 20.6 180 71-283 75-264 (293)
110 3qou_A Protein YBBN; thioredox 98.5 4.3E-06 1.5E-10 86.2 18.7 162 155-351 117-282 (287)
111 3dra_A Protein farnesyltransfe 98.5 1.2E-05 4.2E-10 82.7 21.3 214 127-352 47-286 (306)
112 2r5s_A Uncharacterized protein 98.5 1.6E-06 5.3E-11 82.1 13.5 157 223-389 8-170 (176)
113 2vsy_A XCC0866; transferase, g 98.4 1.5E-06 5.2E-11 99.5 14.5 151 84-252 2-159 (568)
114 3gyz_A Chaperone protein IPGC; 98.4 3E-06 1E-10 77.6 13.1 94 155-250 36-133 (151)
115 3u3w_A Transcriptional activat 98.4 6.9E-06 2.4E-10 85.0 17.4 183 72-284 76-265 (293)
116 2c2l_A CHIP, carboxy terminus 98.4 1.3E-06 4.3E-11 89.9 11.5 190 71-284 4-198 (281)
117 2yhc_A BAMD, UPF0169 lipoprote 98.4 1.8E-05 6.1E-10 78.2 19.5 61 368-428 152-214 (225)
118 3u3w_A Transcriptional activat 98.4 3.7E-05 1.3E-09 79.4 22.3 172 118-317 80-265 (293)
119 2uy1_A Cleavage stimulation fa 98.4 0.00045 1.5E-08 76.8 32.4 109 528-648 301-411 (493)
120 3rjv_A Putative SEL1 repeat pr 98.4 1.3E-05 4.4E-10 78.4 17.5 141 130-285 3-158 (212)
121 4gco_A Protein STI-1; structur 98.4 2.5E-06 8.7E-11 75.5 11.2 115 65-198 8-122 (126)
122 2qfc_A PLCR protein; TPR, HTH, 98.4 6.3E-05 2.2E-09 77.6 23.6 178 119-353 81-266 (293)
123 4gco_A Protein STI-1; structur 98.3 4.7E-06 1.6E-10 73.8 12.1 93 155-249 13-109 (126)
124 3gyz_A Chaperone protein IPGC; 98.3 3.6E-06 1.2E-10 77.0 11.0 109 60-185 26-134 (151)
125 4f3v_A ESX-1 secretion system 98.3 1.1E-06 3.7E-11 88.4 7.9 188 59-263 29-248 (282)
126 2vgx_A Chaperone SYCD; alterna 98.3 1.7E-06 5.9E-11 79.2 8.5 105 135-249 9-117 (148)
127 3rjv_A Putative SEL1 repeat pr 98.3 7.7E-05 2.6E-09 72.8 20.5 114 304-428 68-198 (212)
128 3n71_A Histone lysine methyltr 98.3 3.3E-06 1.1E-10 93.2 11.5 147 79-249 317-463 (490)
129 1a17_A Serine/threonine protei 98.2 1.5E-05 5E-10 74.0 13.6 126 155-283 13-144 (166)
130 2xcb_A PCRH, regulatory protei 98.1 6.6E-06 2.3E-10 74.5 9.2 92 155-248 18-113 (142)
131 1na0_A Designed protein CTPR3; 98.1 0.00012 4.1E-09 63.6 17.3 115 324-445 9-123 (125)
132 2e2e_A Formate-dependent nitri 98.1 4.1E-06 1.4E-10 79.2 8.1 120 125-285 22-144 (177)
133 2e2e_A Formate-dependent nitri 98.1 1.3E-05 4.6E-10 75.5 11.7 113 220-336 43-160 (177)
134 1hh8_A P67PHOX, NCF-2, neutrop 98.1 8.3E-05 2.8E-09 72.3 17.6 133 223-393 8-151 (213)
135 2vgx_A Chaperone SYCD; alterna 98.1 2E-05 6.7E-10 72.0 12.1 110 59-185 10-119 (148)
136 1a17_A Serine/threonine protei 98.1 0.00013 4.6E-09 67.3 17.9 131 324-461 13-145 (166)
137 3ro3_A PINS homolog, G-protein 98.1 1.7E-05 5.9E-10 72.9 11.5 150 70-249 8-157 (164)
138 2lni_A Stress-induced-phosphop 98.1 2.6E-05 9.1E-10 69.0 12.2 114 153-269 14-131 (133)
139 1hh8_A P67PHOX, NCF-2, neutrop 98.1 0.00011 3.6E-09 71.5 17.6 129 326-463 8-151 (213)
140 3q7a_A Farnesyltransferase alp 98.1 0.00017 6E-09 74.9 19.5 114 71-202 54-170 (349)
141 2uy1_A Cleavage stimulation fa 98.1 0.02 6.9E-07 63.3 37.7 333 235-664 28-392 (493)
142 2vyi_A SGTA protein; chaperone 98.1 3.1E-05 1.1E-09 68.2 12.0 114 155-271 12-129 (131)
143 3q7a_A Farnesyltransferase alp 98.1 0.00052 1.8E-08 71.3 22.7 114 169-285 68-196 (349)
144 2vyi_A SGTA protein; chaperone 98.1 0.00014 4.8E-09 63.8 16.3 120 323-449 11-130 (131)
145 3gw4_A Uncharacterized protein 98.1 9.4E-05 3.2E-09 71.1 16.3 140 222-390 27-174 (203)
146 3gw4_A Uncharacterized protein 98.1 6.2E-05 2.1E-09 72.4 15.0 165 232-426 3-175 (203)
147 2xcb_A PCRH, regulatory protei 98.1 2.7E-05 9.3E-10 70.4 11.5 108 61-185 9-116 (142)
148 1p5q_A FKBP52, FK506-binding p 98.0 3E-05 1E-09 81.8 13.3 147 126-283 126-292 (336)
149 2c2l_A CHIP, carboxy terminus 98.0 0.00014 4.9E-09 74.4 18.1 195 220-462 3-199 (281)
150 4b4t_Q 26S proteasome regulato 98.0 0.00025 8.6E-09 77.6 21.4 180 75-283 8-202 (434)
151 3n71_A Histone lysine methyltr 98.0 2.4E-05 8.1E-10 86.3 12.4 140 121-284 317-463 (490)
152 1na0_A Designed protein CTPR3; 98.0 6E-05 2.1E-09 65.6 12.7 96 157-285 11-106 (125)
153 4b4t_Q 26S proteasome regulato 98.0 0.00021 7.1E-09 78.3 19.7 111 158-283 7-122 (434)
154 2lni_A Stress-induced-phosphop 98.0 0.00014 4.9E-09 64.1 15.1 120 321-447 13-132 (133)
155 2fbn_A 70 kDa peptidylprolyl i 98.0 6.9E-06 2.4E-10 79.3 6.7 130 122-286 47-187 (198)
156 3dss_A Geranylgeranyl transfer 98.0 0.00075 2.6E-08 69.8 21.7 183 71-269 26-240 (331)
157 3sz7_A HSC70 cochaperone (SGT) 98.0 5.8E-05 2E-09 70.1 12.0 94 155-250 11-108 (164)
158 3upv_A Heat shock protein STI1 98.0 6.5E-05 2.2E-09 66.1 11.7 90 157-248 6-99 (126)
159 4gcn_A Protein STI-1; structur 97.9 9.5E-05 3.3E-09 65.3 12.3 105 122-261 17-121 (127)
160 1p5q_A FKBP52, FK506-binding p 97.9 0.00016 5.6E-09 76.1 16.1 131 323-461 146-293 (336)
161 3dss_A Geranylgeranyl transfer 97.9 0.0025 8.7E-08 65.8 24.2 115 125-249 41-173 (331)
162 2kck_A TPR repeat; tetratricop 97.9 8.7E-05 3E-09 63.1 11.3 96 189-285 4-106 (112)
163 2fbn_A 70 kDa peptidylprolyl i 97.9 6.5E-05 2.2E-09 72.3 11.6 146 155-319 38-187 (198)
164 3upv_A Heat shock protein STI1 97.9 9E-05 3.1E-09 65.2 11.2 93 192-285 5-101 (126)
165 4gcn_A Protein STI-1; structur 97.9 7.1E-05 2.4E-09 66.1 10.5 68 218-285 39-112 (127)
166 1hxi_A PEX5, peroxisome target 97.9 4E-05 1.4E-09 67.1 8.4 94 158-284 20-113 (121)
167 1elw_A TPR1-domain of HOP; HOP 97.8 0.00017 5.8E-09 61.9 12.4 96 157-285 6-101 (118)
168 3sz7_A HSC70 cochaperone (SGT) 97.8 0.00017 5.7E-09 66.9 12.8 106 71-194 11-116 (164)
169 2kck_A TPR repeat; tetratricop 97.8 7.4E-05 2.5E-09 63.6 9.6 94 157-252 8-108 (112)
170 2dba_A Smooth muscle cell asso 97.8 0.00031 1E-08 63.3 13.1 113 71-198 28-140 (148)
171 1elw_A TPR1-domain of HOP; HOP 97.7 0.001 3.6E-08 56.7 15.9 98 324-427 4-101 (118)
172 2hr2_A Hypothetical protein; a 97.7 0.00021 7.2E-09 64.7 11.0 108 71-185 11-132 (159)
173 2xev_A YBGF; tetratricopeptide 97.7 0.00033 1.1E-08 61.6 12.3 96 160-285 7-105 (129)
174 1hxi_A PEX5, peroxisome target 97.7 0.00014 5E-09 63.4 9.6 95 222-318 18-114 (121)
175 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00011 3.8E-09 81.1 10.8 110 64-184 262-380 (457)
176 3q49_B STIP1 homology and U bo 97.7 0.00099 3.4E-08 59.1 15.4 98 221-353 9-106 (137)
177 1elr_A TPR2A-domain of HOP; HO 97.7 0.00011 3.7E-09 64.6 8.7 97 157-285 6-108 (131)
178 1ihg_A Cyclophilin 40; ppiase 97.7 0.00033 1.1E-08 74.8 13.9 120 71-202 223-352 (370)
179 1elr_A TPR2A-domain of HOP; HO 97.7 0.00061 2.1E-08 59.6 13.2 112 324-442 4-121 (131)
180 1wao_1 Serine/threonine protei 97.7 4.8E-05 1.6E-09 84.4 7.1 117 124-281 17-135 (477)
181 2dba_A Smooth muscle cell asso 97.7 0.0013 4.4E-08 59.1 15.6 99 322-427 26-128 (148)
182 3q49_B STIP1 homology and U bo 97.6 0.0014 4.7E-08 58.1 15.0 98 323-426 8-105 (137)
183 1dce_A Protein (RAB geranylger 97.6 0.001 3.5E-08 75.1 17.2 169 84-271 42-241 (567)
184 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00019 6.6E-09 75.6 10.1 110 71-215 179-288 (338)
185 1wao_1 Serine/threonine protei 97.6 6.8E-05 2.3E-09 83.2 6.9 118 164-314 15-135 (477)
186 3rkv_A Putative peptidylprolyl 97.6 0.00065 2.2E-08 62.7 12.4 111 71-191 11-131 (162)
187 3ro3_A PINS homolog, G-protein 97.5 0.001 3.5E-08 60.6 13.6 138 324-461 9-157 (164)
188 2xev_A YBGF; tetratricopeptide 97.5 0.00097 3.3E-08 58.4 12.7 96 223-319 4-106 (129)
189 3qww_A SET and MYND domain-con 97.5 0.00016 5.6E-09 78.3 8.9 102 83-184 310-411 (433)
190 1kt0_A FKBP51, 51 kDa FK506-bi 97.5 0.0004 1.4E-08 76.6 11.6 112 155-284 268-379 (457)
191 2hr2_A Hypothetical protein; a 97.5 0.00034 1.2E-08 63.3 8.7 100 122-249 20-130 (159)
192 3k9i_A BH0479 protein; putativ 97.5 6.6E-05 2.2E-09 65.1 3.8 107 168-305 3-111 (117)
193 1ihg_A Cyclophilin 40; ppiase 97.4 0.00043 1.5E-08 73.9 10.5 113 156-285 224-336 (370)
194 3rkv_A Putative peptidylprolyl 97.4 0.00043 1.5E-08 63.9 9.3 114 155-291 11-130 (162)
195 3qwp_A SET and MYND domain-con 97.4 0.0003 1E-08 76.3 9.4 108 76-183 292-399 (429)
196 3k9i_A BH0479 protein; putativ 97.4 0.00015 5.2E-09 62.8 5.6 89 125-250 2-90 (117)
197 3qww_A SET and MYND domain-con 97.3 0.00058 2E-08 73.9 9.2 101 125-249 310-410 (433)
198 2if4_A ATFKBP42; FKBP-like, al 97.2 0.00048 1.6E-08 72.5 7.3 145 156-318 180-328 (338)
199 3qwp_A SET and MYND domain-con 97.2 0.0017 5.7E-08 70.5 11.3 106 120-249 294-399 (429)
200 2l6j_A TPR repeat-containing p 97.1 0.00053 1.8E-08 58.2 5.2 88 121-218 12-105 (111)
201 1zu2_A Mitochondrial import re 97.0 0.00052 1.8E-08 62.0 4.5 108 167-299 14-132 (158)
202 3fau_A NEDD4-binding protein 2 97.0 0.00043 1.5E-08 55.1 3.4 63 713-779 2-64 (82)
203 2kat_A Uncharacterized protein 97.0 0.0015 5E-08 56.1 7.0 75 173-249 3-81 (115)
204 1dce_A Protein (RAB geranylger 96.9 0.012 4.2E-07 66.2 16.1 175 127-342 43-244 (567)
205 2d9i_A NEDD4-binding protein 2 96.9 0.001 3.4E-08 54.8 5.0 64 712-779 9-72 (96)
206 2vkc_A NEDD4-binding protein 2 96.8 0.0033 1.1E-07 55.3 8.2 65 711-779 53-117 (135)
207 1klx_A Cysteine rich protein B 96.8 0.017 5.6E-07 51.4 12.9 110 169-287 9-128 (138)
208 3ma5_A Tetratricopeptide repea 96.6 0.0031 1.1E-07 52.5 6.3 27 222-248 42-68 (100)
209 3ma5_A Tetratricopeptide repea 96.6 0.0063 2.2E-07 50.6 8.2 66 218-284 4-69 (100)
210 2kat_A Uncharacterized protein 96.5 0.0056 1.9E-07 52.3 7.6 77 130-216 2-78 (115)
211 1na3_A Designed protein CTPR2; 96.4 0.041 1.4E-06 44.0 11.8 79 364-444 10-88 (91)
212 2l6j_A TPR repeat-containing p 96.3 0.017 6E-07 48.4 9.5 89 362-453 3-98 (111)
213 1klx_A Cysteine rich protein B 96.3 0.1 3.6E-06 46.1 14.7 110 304-428 10-127 (138)
214 1na3_A Designed protein CTPR2; 96.2 0.05 1.7E-06 43.5 11.4 83 323-411 8-90 (91)
215 3ly7_A Transcriptional activat 95.9 0.071 2.4E-06 55.2 12.9 129 153-285 195-339 (372)
216 3ly7_A Transcriptional activat 95.8 0.19 6.6E-06 52.0 15.5 162 207-402 180-347 (372)
217 1zu2_A Mitochondrial import re 95.7 0.041 1.4E-06 49.5 8.9 100 335-442 13-133 (158)
218 3u64_A Protein TP_0956; tetrat 95.5 0.15 5.1E-06 50.6 12.6 53 88-142 49-116 (301)
219 2kc7_A BFR218_protein; tetratr 95.1 0.017 5.9E-07 47.5 4.3 58 162-251 7-65 (99)
220 3bee_A Putative YFRE protein; 95.0 0.2 7E-06 40.6 10.3 71 66-147 2-75 (93)
221 3mkq_A Coatomer beta'-subunit; 95.0 0.23 7.9E-06 58.8 15.3 152 232-424 610-762 (814)
222 2kc7_A BFR218_protein; tetratr 94.8 0.084 2.9E-06 43.1 7.7 60 226-286 5-65 (99)
223 3mkq_A Coatomer beta'-subunit; 94.7 2.5 8.5E-05 49.7 23.2 98 166-283 610-708 (814)
224 3qd7_X Uncharacterized protein 94.0 0.054 1.8E-06 47.3 4.7 64 712-786 48-111 (137)
225 3u64_A Protein TP_0956; tetrat 93.8 2.8 9.7E-05 41.5 17.0 92 305-404 179-283 (301)
226 3bee_A Putative YFRE protein; 93.6 0.72 2.4E-05 37.3 10.8 66 219-285 4-72 (93)
227 2v5f_A Prolyl 4-hydroxylase su 93.1 0.35 1.2E-05 40.1 8.4 64 222-285 6-75 (104)
228 3mkq_B Coatomer subunit alpha; 92.8 1.6 5.3E-05 39.9 12.6 98 167-281 17-114 (177)
229 1pc2_A Mitochondria fission pr 92.2 1.5 5.1E-05 38.9 11.4 85 529-617 14-103 (152)
230 3mkq_B Coatomer subunit alpha; 91.3 4.8 0.00016 36.6 13.9 125 302-460 18-142 (177)
231 3ffl_A Anaphase-promoting comp 89.9 1.9 6.5E-05 38.6 9.7 76 67-142 16-92 (167)
232 1pc2_A Mitochondria fission pr 89.8 1.5 5.2E-05 38.9 9.0 65 361-426 30-99 (152)
233 2v5f_A Prolyl 4-hydroxylase su 89.5 4.5 0.00015 33.1 11.5 69 323-391 4-74 (104)
234 2zqe_A MUTS2 protein; alpha/be 89.3 0.41 1.4E-05 37.6 4.4 52 713-779 6-57 (83)
235 2ff4_A Probable regulatory pro 89.0 4.9 0.00017 42.4 14.1 120 151-284 111-233 (388)
236 4h7y_A Dual specificity protei 88.6 3.2 0.00011 36.4 9.8 59 233-292 72-130 (161)
237 1wy6_A Hypothetical protein ST 88.5 11 0.00038 32.3 16.6 137 302-464 20-156 (172)
238 1wy6_A Hypothetical protein ST 87.7 5.7 0.00019 34.1 10.4 139 125-288 19-157 (172)
239 4fhn_B Nucleoporin NUP120; pro 86.5 8.7 0.0003 47.1 16.1 96 190-285 841-967 (1139)
240 1qsa_A Protein (soluble lytic 86.2 47 0.0016 37.1 24.1 251 197-461 78-347 (618)
241 2wpv_A GET4, UPF0363 protein Y 86.1 30 0.001 34.8 18.5 25 191-215 134-158 (312)
242 3lvg_A Clathrin heavy chain 1; 86.0 0.00011 3.7E-09 77.2 -23.1 92 184-278 47-138 (624)
243 4gns_B Protein CSD3, chitin bi 85.7 12 0.0004 43.0 15.3 136 75-219 252-399 (754)
244 2ff4_A Probable regulatory pro 84.4 12 0.00039 39.5 13.9 71 366-437 174-249 (388)
245 4b4t_P 26S proteasome regulato 84.0 49 0.0017 35.4 19.1 172 258-457 139-319 (445)
246 3ffl_A Anaphase-promoting comp 83.2 4.1 0.00014 36.4 8.1 121 121-249 28-150 (167)
247 4h7y_A Dual specificity protei 82.7 24 0.00083 30.9 13.0 111 65-185 8-124 (161)
248 1nzn_A CGI-135 protein, fissio 79.9 8.5 0.00029 32.7 8.5 84 530-617 18-106 (126)
249 1nzn_A CGI-135 protein, fissio 78.5 8 0.00028 32.9 7.9 82 379-462 17-103 (126)
250 2p58_C Putative type III secre 77.0 14 0.00047 29.7 8.1 77 235-319 21-99 (116)
251 3txn_A 26S proteasome regulato 76.6 57 0.0019 34.0 15.6 99 75-180 103-206 (394)
252 1v54_E Cytochrome C oxidase po 75.9 15 0.00052 29.6 8.2 60 307-371 28-87 (109)
253 4fhn_B Nucleoporin NUP120; pro 74.7 49 0.0017 40.4 16.9 215 223-459 814-1047(1139)
254 3txn_A 26S proteasome regulato 74.1 89 0.003 32.6 25.7 179 71-282 19-207 (394)
255 2uwj_G Type III export protein 73.8 13 0.00044 29.7 7.2 77 235-319 20-98 (115)
256 4b4t_R RPN7, 26S proteasome re 73.7 23 0.00078 37.8 12.1 96 222-317 132-236 (429)
257 1v54_E Cytochrome C oxidase po 72.5 32 0.0011 27.7 9.2 63 378-441 25-87 (109)
258 4gns_B Protein CSD3, chitin bi 71.8 22 0.00075 40.7 11.8 52 332-389 345-397 (754)
259 4b4t_P 26S proteasome regulato 68.7 1.3E+02 0.0043 32.1 22.2 189 64-284 49-246 (445)
260 4ady_A RPN2, 26S proteasome re 67.1 2E+02 0.0068 33.8 31.7 24 194-217 233-256 (963)
261 3eiq_C Programmed cell death p 66.8 11 0.00037 38.9 7.1 73 365-438 219-293 (358)
262 2y69_E Cytochrome C oxidase su 65.8 30 0.001 29.6 8.2 59 308-371 72-130 (152)
263 2y69_E Cytochrome C oxidase su 65.7 44 0.0015 28.6 9.2 36 601-636 71-106 (152)
264 4b4t_R RPN7, 26S proteasome re 62.5 26 0.00088 37.3 9.6 104 71-182 131-235 (429)
265 2p58_C Putative type III secre 62.3 53 0.0018 26.4 8.5 85 529-622 23-107 (116)
266 3lpz_A GET4 (YOR164C homolog); 60.5 1.5E+02 0.005 30.0 19.0 79 190-283 135-214 (336)
267 2uwj_G Type III export protein 57.1 51 0.0018 26.4 7.6 85 529-622 22-106 (115)
268 3o48_A Mitochondria fission 1 57.0 92 0.0032 26.6 10.4 68 395-462 37-107 (134)
269 3ogk_Q JAZ1 incomplete degron 53.7 5.2 0.00018 22.1 1.1 16 833-848 1-16 (22)
270 3eiq_C Programmed cell death p 53.3 1.6E+02 0.0053 30.2 13.0 72 585-658 219-290 (358)
271 3ogl_Q JAZ1 incomplete degron 51.3 5.5 0.00019 21.6 0.9 17 832-848 5-21 (21)
272 3lvg_A Clathrin heavy chain 1; 51.2 0.66 2.3E-05 49.3 -5.0 165 71-275 54-218 (624)
273 3o48_A Mitochondria fission 1 50.0 1.2E+02 0.0041 25.9 9.9 73 544-618 36-111 (134)
274 1k1a_A B-cell lymphoma 3-encod 49.1 28 0.00097 33.0 6.7 85 370-458 13-101 (241)
275 2zu6_B Programmed cell death p 48.7 34 0.0012 34.3 7.1 69 365-434 168-238 (307)
276 3esl_A Checkpoint serine/threo 48.1 1.3E+02 0.0043 27.9 10.1 57 376-432 92-149 (202)
277 1zbp_A Hypothetical protein VP 46.8 1.3E+02 0.0045 29.2 10.5 41 59-100 20-60 (273)
278 1y8m_A FIS1; mitochondria, unk 43.6 1.6E+02 0.0055 25.5 11.7 67 396-462 37-106 (144)
279 1zbp_A Hypothetical protein VP 39.4 2.8E+02 0.0095 27.0 14.4 115 229-352 5-128 (273)
280 4gq2_M Nucleoporin NUP120; bet 37.8 1.5E+02 0.0052 35.1 11.7 106 194-300 813-945 (950)
281 1y8m_A FIS1; mitochondria, unk 37.5 2E+02 0.0069 24.8 11.7 72 545-618 36-110 (144)
282 2nsz_A Programmed cell death p 33.5 1.6E+02 0.0055 24.9 8.1 69 586-656 10-78 (129)
283 3esl_A Checkpoint serine/threo 33.2 2.9E+02 0.01 25.4 10.5 54 340-396 95-148 (202)
284 2nsz_A Programmed cell death p 32.5 1.1E+02 0.0038 25.9 6.9 23 367-389 11-33 (129)
285 2ion_A PDCD4, programmed cell 30.4 1.9E+02 0.0066 25.2 8.2 69 586-656 12-80 (152)
286 2ion_A PDCD4, programmed cell 29.8 1.3E+02 0.0043 26.5 6.9 69 224-293 12-82 (152)
287 4a1g_A Mitotic checkpoint seri 28.9 2.9E+02 0.01 24.1 9.4 52 380-431 82-134 (152)
288 2crb_A Nuclear receptor bindin 28.2 61 0.0021 25.4 3.8 28 71-98 15-42 (97)
289 4a1g_A Mitotic checkpoint seri 27.7 1.7E+02 0.0059 25.6 7.2 54 129-188 81-134 (152)
290 3lpz_A GET4 (YOR164C homolog); 27.4 4.9E+02 0.017 26.2 23.9 102 531-636 77-185 (336)
291 4g8k_A 2-5A-dependent ribonucl 26.1 34 0.0012 34.7 3.0 107 533-657 219-330 (337)
292 1n11_A Ankyrin; clathrin, BAND 25.7 34 0.0012 36.2 3.0 335 241-655 27-371 (437)
293 4g8k_A 2-5A-dependent ribonucl 25.0 5E+02 0.017 25.5 13.3 105 310-433 220-329 (337)
294 1wdy_A 2-5A-dependent ribonucl 24.9 49 0.0017 32.1 3.9 203 309-572 18-240 (285)
295 3mv2_A Coatomer subunit alpha; 24.3 5.4E+02 0.018 25.7 13.8 186 76-288 33-239 (325)
296 2wvi_A Mitotic checkpoint seri 22.6 4E+02 0.014 23.6 9.7 55 380-434 77-132 (164)
297 1k1a_A B-cell lymphoma 3-encod 22.4 84 0.0029 29.5 4.9 117 330-456 82-203 (241)
298 3utm_A Tankyrase-1; tankyrase, 22.3 1.2E+02 0.0042 30.3 6.5 15 266-280 31-45 (351)
299 2wpv_A GET4, UPF0363 protein Y 22.2 5.9E+02 0.02 25.3 24.3 25 323-347 133-157 (312)
300 2rpa_A Katanin P60 ATPase-cont 22.1 73 0.0025 24.3 3.3 30 71-100 12-41 (78)
301 2keb_A DNA polymerase subunit 21.7 3.1E+02 0.011 21.9 6.9 56 567-624 28-88 (101)
302 2wvi_A Mitotic checkpoint seri 20.5 2.7E+02 0.0093 24.7 7.2 53 567-619 79-132 (164)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-33 Score=329.09 Aligned_cols=367 Identities=6% Similarity=-0.011 Sum_probs=307.9
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH--HH-HHHHHhCCCCcCHHHHHHH
Q 003082 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR--AI-YEDLRSQNVTLNIYVFNSL 297 (850)
Q Consensus 221 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~--~~-~~~m~~~g~~pd~~t~~~l 297 (850)
..+++.++.+|.+.|++++|+++|++|.+.++ .+...+..+...+...+..+.+. .+ +..+...+..++..+|+.+
T Consensus 200 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 278 (597)
T 2xpi_A 200 ASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLK 278 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHH
Confidence 47889999999999999999999999998643 35566777766554443332222 22 5555555555566667776
Q ss_pred HHhhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHh
Q 003082 298 MNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375 (850)
Q Consensus 298 l~~~~--~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~ 375 (850)
+..+. |++++|.++|+++.+. +++..+++.++.+|.+.|++++|.++|+++.+. .+.+..+|+.++.+|.+
T Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~ 351 (597)
T 2xpi_A 279 LNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEI-----DPYNLDVYPLHLASLHE 351 (597)
T ss_dssp SCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCCTTHHHHHHHHHH
T ss_pred HHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc-----CcccHHHHHHHHHHHHH
Confidence 76654 5899999999999875 589999999999999999999999999999873 23477889999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 003082 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455 (850)
Q Consensus 376 ~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l 455 (850)
.|++++|..+++++.+.. ..+..+|+.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++
T Consensus 352 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 429 (597)
T 2xpi_A 352 SGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISA 429 (597)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998654 3478999999999999999999999999998863 45678999999999999999999999
Q ss_pred HHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHh--ccHHHHH
Q 003082 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVK 533 (850)
Q Consensus 456 ~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~--~~~~~a~ 533 (850)
|+++.... +.+..+|+.++.+|. ++.++|.
T Consensus 430 ~~~~~~~~------------------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 430 YTTAARLF------------------------------------------------QGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp HHHHHHTT------------------------------------------------TTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhC------------------------------------------------ccchHHHHHHHHHHHHcCCHHHHH
Confidence 99987542 357788999998887 5789999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHH
Q 003082 534 ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED----GMSPD--VVAYTTAIKVCVRSKRLKQAFSLFE 607 (850)
Q Consensus 534 ~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd--~~ty~~li~~~~~~g~~~~A~~l~~ 607 (850)
++|+++.+... .+..+|+.++..|.+.|++++|.++|++|.+. +..|+ ..+|+.++.+|.+.|++++|.++|+
T Consensus 462 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 462 EYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540 (597)
T ss_dssp HHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999988633 37889999999999999999999999999875 77888 7899999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHc
Q 003082 608 EMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKA 650 (850)
Q Consensus 608 ~m~~~g~~p~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~~ 650 (850)
++.+.+ ..+..+|..+..+|.+.|++++ |.+.|+++.+.
T Consensus 541 ~~~~~~-p~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~l~~ 579 (597)
T 2xpi_A 541 QGLLLS-TNDANVHTAIALVYLHKKIPGL---AITHLHESLAI 579 (597)
T ss_dssp HHHHHS-SCCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHH
T ss_pred HHHHhC-CCChHHHHHHHHHHHHhCCHHH---HHHHHHHHHhc
Confidence 998854 3489999999999999999888 66688888774
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-33 Score=328.60 Aligned_cols=483 Identities=12% Similarity=-0.002 Sum_probs=389.5
Q ss_pred CCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCC
Q 003082 66 DLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA 145 (850)
Q Consensus 66 ~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~ 145 (850)
.|......|..++..+.+.|++++|+.+|++++...+++ .. +......+...|++++|+.+|+++... .
T Consensus 79 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~--~ 147 (597)
T 2xpi_A 79 DSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP--ND-------AFWLAQVYCCTGDYARAKCLLTKEDLY--N 147 (597)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH--HH-------HHHHHHHHHHTTCHHHHHHHHHHTCGG--G
T ss_pred chHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc--hH-------HHHHHHHHHHcCcHHHHHHHHHHHhcc--c
Confidence 343447889999999999999999999999999774433 11 123445677999999999999998632 2
Q ss_pred CccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCC--------------CCCCCcccHHHHHHHHHcCCChHHHH
Q 003082 146 PLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR--------------LPVKELDEEFRIVQLCVNKPDVNLAI 211 (850)
Q Consensus 146 p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~A~ 211 (850)
++ ..++..++..|.+.|++++|+++|+++.... -.+.+...++.++..|.+.|++++|+
T Consensus 148 ~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 220 (597)
T 2xpi_A 148 RS-------SACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAK 220 (597)
T ss_dssp TC-------HHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cc-------hhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHH
Confidence 32 2344455666778999999999998532111 00123678899999999999999999
Q ss_pred HHhhhC----CCCcchHHHHHHHHHhcCChHHHHH--H-HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 212 RYACIV----PRADILFCNFVREFGKKRDLVSALR--A-YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 212 ~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~--~-~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
.+|+.+ |.+..++..++..+...+..+.+.. + |..+...+..+...+|+.++..|.+.|++++|.++|+++.+
T Consensus 221 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 300 (597)
T 2xpi_A 221 ECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING 300 (597)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhc
Confidence 999775 6666677777666655443333222 1 55555555555667788889999999999999999999886
Q ss_pred CCCCcCHHHHHHHHHhh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccC
Q 003082 285 QNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362 (850)
Q Consensus 285 ~g~~pd~~t~~~ll~~~--~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d 362 (850)
. .++..+|+.+..++ .|++++|.++|+++.+.+ +.+..+++.++.+|.+.|++++|.++|+.+.+. .+.+
T Consensus 301 ~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~ 372 (597)
T 2xpi_A 301 L--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-----HPEK 372 (597)
T ss_dssp G--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTS
T ss_pred C--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-----Cccc
Confidence 6 58899999998875 479999999999998876 447889999999999999999999999999863 3457
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003082 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (850)
Q Consensus 363 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~ 442 (850)
..+|+.++.+|.+.|++++|.++|+++.+... .+..+|+.++.+|++.|++++|.++|+++.+.+ +.+..+|+.++.+
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 450 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQ 450 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 88999999999999999999999999987543 368899999999999999999999999999864 5578899999999
Q ss_pred HHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHH
Q 003082 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM 522 (850)
Q Consensus 443 ~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li 522 (850)
|.+.|++++|.++|+.+.... +.+..+|+.++
T Consensus 451 ~~~~g~~~~A~~~~~~~~~~~------------------------------------------------~~~~~~~~~l~ 482 (597)
T 2xpi_A 451 HMQLGNILLANEYLQSSYALF------------------------------------------------QYDPLLLNELG 482 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC------------------------------------------------CCCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC------------------------------------------------CCChHHHHHHH
Confidence 999999999999999987542 45778899999
Q ss_pred HHHh--ccHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003082 523 KACC--TDYYRVKALMNEMRTV----GLSPN--HISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCV 594 (850)
Q Consensus 523 ~~~~--~~~~~a~~l~~~m~~~----g~~p~--~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~ 594 (850)
..|+ ++.++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|..+|+++.+.+ +.+..+|..+..+|.
T Consensus 483 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~ 561 (597)
T 2xpi_A 483 VVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYL 561 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 9887 4789999999999876 77888 7899999999999999999999999998865 448899999999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 003082 595 RSKRLKQAFSLFEEMKHYQIQP-NLVTYITLLRA 627 (850)
Q Consensus 595 ~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~a 627 (850)
+.|++++|.++|+++.+. .| +...+..+...
T Consensus 562 ~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 562 HKKIPGLAITHLHESLAI--SPNEIMASDLLKRA 593 (597)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHhc--CCCChHHHHHHHHH
Confidence 999999999999999974 45 45555555443
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.4e-30 Score=291.12 Aligned_cols=214 Identities=16% Similarity=0.211 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003082 381 MALKVKEDMLSAGVTPNT-ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (850)
Q Consensus 381 ~A~~l~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m 459 (850)
.+..+.+++.+.++.+.. ..++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+...++.
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~------ 81 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESS------ 81 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSS------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhh------
Confidence 445556666666665443 4577788888888888888888888888888888888888888887765433210
Q ss_pred hhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhccHHHHHHHHHHH
Q 003082 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEM 539 (850)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~a~~l~~~m 539 (850)
. .+..++|.++|++|
T Consensus 82 -----------------------------------------------------~------------~~~l~~A~~lf~~M 96 (501)
T 4g26_A 82 -----------------------------------------------------P------------NPGLSRGFDIFKQM 96 (501)
T ss_dssp -----------------------------------------------------C------------CHHHHHHHHHHHHH
T ss_pred -----------------------------------------------------h------------cchHHHHHHHHHHH
Confidence 0 01256888999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 003082 540 RTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLV 619 (850)
Q Consensus 540 ~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 619 (850)
.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..|||++|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 97 ~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ 176 (501)
T 4g26_A 97 IVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEP 176 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003082 620 TYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE 668 (850)
Q Consensus 620 t~~~li~a~~~~g~~~~a~~a~~l~~~M~~~g~~p~~~~~~~li~~~~~ 668 (850)
||++||++|++.|++++ |+++|++|.+.|+.|+..||+.|++.|+.
T Consensus 177 ty~~Li~~~~~~g~~d~---A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 177 ELAALLKVSMDTKNADK---VYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHHTTCHHH---HHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhCCCHHH---HHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 99999999999999777 77899999999999999999999999875
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.3e-29 Score=283.17 Aligned_cols=206 Identities=14% Similarity=0.207 Sum_probs=174.3
Q ss_pred HHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---------
Q 003082 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL--------- 413 (850)
Q Consensus 343 A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~--------- 413 (850)
+..+.+.+.+ ++........++.+|++|++.|++++|+++|++|.+.|+.||.+|||+||.+|++.+.
T Consensus 9 ~e~L~~~~~~---k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 9 SENLSRKAKK---KAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp ------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred HHHHHHHHHH---hcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence 3444455544 2322223456888899999999999999999999999999999999999999987664
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCC
Q 003082 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNT 493 (850)
Q Consensus 414 ~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (850)
++.|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M---------------------------------- 131 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQM---------------------------------- 131 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHH----------------------------------
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----------------------------------
Confidence 7889999999999999999999999999999999988887777654
Q ss_pred CCCcCCCcccccccccCCCcCHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 003082 494 PNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKI 573 (850)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~ 573 (850)
.+.|+.||..||++||.+|++.|++++|.++|++
T Consensus 132 ----------------------------------------------~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 132 ----------------------------------------------KAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp ----------------------------------------------HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----------------------------------------------HHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 4567889999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003082 574 MREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRY 631 (850)
Q Consensus 574 m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~~~ 631 (850)
|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.|+..||+.|+..|+..
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999998864
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=5.5e-23 Score=225.31 Aligned_cols=293 Identities=13% Similarity=0.074 Sum_probs=155.0
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhH
Q 003082 77 MASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFK 156 (850)
Q Consensus 77 l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~ 156 (850)
++..+.+.|++++|+..++.+++. +|+...... . ....+...|++++|...++.+.+. .|+. ..
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~---~---l~~~~~~~~~~~~a~~~~~~a~~~--~p~~------~~ 68 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLL---L---LSSIHFQCRRLDRSAHFSTLAIKQ--NPLL------AE 68 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHH---H---HHHHHHHTTCHHHHHHHHHHHHHH--CTTC------HH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHH---H---HHHHHHHcCCHHHHHHHHHHHHhc--CCCc------hH
Confidence 455666677777777777777766 444322211 1 122344667777777777777643 4433 34
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCC
Q 003082 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRD 236 (850)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~ 236 (850)
++...+..+...|++++|+..|++++... |+. ..++..++..|.+.|+
T Consensus 69 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~------------------------------~~~~~~l~~~~~~~g~ 116 (388)
T 1w3b_A 69 AYSNLGNVYKERGQLQEAIEHYRHALRLK--PDF------------------------------IDGYINLAAALVAAGD 116 (388)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTC------------------------------HHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC--cch------------------------------HHHHHHHHHHHHHcCC
Confidence 44555555666677777777777766543 433 3456666667777777
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHH
Q 003082 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQ 316 (850)
Q Consensus 237 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~ 316 (850)
+++|+..|+++.+..+ .+...+..+...+...|++++|.+.|+++.+.. |
T Consensus 117 ~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p--------------------------- 166 (388)
T 1w3b_A 117 MEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ--P--------------------------- 166 (388)
T ss_dssp SSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC--T---------------------------
T ss_pred HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--C---------------------------
Confidence 7777777777666431 234456666666767777777777777665431 1
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003082 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396 (850)
Q Consensus 317 ~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 396 (850)
.+..+|+.+...+.+.|++++|...|+++.+. -+.+...|..+...+...|++++|...|++.......
T Consensus 167 -----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~- 235 (388)
T 1w3b_A 167 -----NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN- 235 (388)
T ss_dssp -----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-
T ss_pred -----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-
Confidence 12334444444444444444444444444432 0112334444444444444444444444444433211
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003082 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (850)
Q Consensus 397 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m 459 (850)
+..++..+...+.+.|++++|...|+++.+.. +.+..+|..+...|.+.|++++|.+.|+.+
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 297 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTA 297 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444445555555555555555544432 223344444555555555555555555443
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=5.6e-23 Score=225.21 Aligned_cols=370 Identities=14% Similarity=0.062 Sum_probs=274.5
Q ss_pred hcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcC
Q 003082 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK 204 (850)
Q Consensus 125 ~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (850)
+.|++++|+..|+++.+ ..|+. ...+......+...|++++|...++..+...
T Consensus 11 ~~g~~~~A~~~~~~~~~--~~p~~------~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~------------------- 63 (388)
T 1w3b_A 11 QAGDFEAAERHCMQLWR--QEPDN------TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN------------------- 63 (388)
T ss_dssp HHTCHHHHHHHHHHHHH--HCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------
T ss_pred HCCCHHHHHHHHHHHHH--hCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------------------
Confidence 55666666666666663 24543 2223333334445566666666665554432
Q ss_pred CChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 205 PDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 205 ~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
|.+..++..++..|.+.|++++|+..|+++.+.. +.+..+|..+..++.+.|++++|...|+++.+
T Consensus 64 -------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 129 (388)
T 1w3b_A 64 -------------PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129 (388)
T ss_dssp -------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH
T ss_pred -------------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445788899999999999999999999998853 23567899999999999999999999998875
Q ss_pred CCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHh
Q 003082 285 QNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364 (850)
Q Consensus 285 ~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ 364 (850)
.. +.+...+..+...+...|++++|.+.|+++.+. .+.+..
T Consensus 130 ~~----------------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~ 170 (388)
T 1w3b_A 130 YN----------------------------------PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET-----QPNFAV 170 (388)
T ss_dssp HC----------------------------------TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH-----CTTCHH
T ss_pred hC----------------------------------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHH
Confidence 31 224556677788888899999999999999873 234578
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003082 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (850)
Q Consensus 365 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~ 444 (850)
+|..+...|...|++++|...|+++.+.+.. +...|..+...+...|++++|...|++..+.. +.+..++..+...|.
T Consensus 171 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 248 (388)
T 1w3b_A 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYY 248 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHH
Confidence 8999999999999999999999999987543 67889999999999999999999999998864 346788999999999
Q ss_pred HhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHH
Q 003082 445 EACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524 (850)
Q Consensus 445 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~ 524 (850)
+.|++++|.+.|+++.... +.+..+|..+...
T Consensus 249 ~~g~~~~A~~~~~~al~~~------------------------------------------------p~~~~~~~~l~~~ 280 (388)
T 1w3b_A 249 EQGLIDLAIDTYRRAIELQ------------------------------------------------PHFPDAYCNLANA 280 (388)
T ss_dssp HTTCHHHHHHHHHHHHHTC------------------------------------------------SSCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhC------------------------------------------------CCCHHHHHHHHHH
Confidence 9999999999999887532 2234556666666
Q ss_pred Hh--ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003082 525 CC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQA 602 (850)
Q Consensus 525 ~~--~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A 602 (850)
+. ++.++|...|+++.+. .+.+..+|..+...|.+.|++++|...++++.+.. +.+..+|..+..+|.+.|++++|
T Consensus 281 ~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 358 (388)
T 1w3b_A 281 LKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 65 4677777777777765 23456677777777777777777777777776642 33466777777777777777777
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 003082 603 FSLFEEMKHYQIQPN-LVTYITLLRAR 628 (850)
Q Consensus 603 ~~l~~~m~~~g~~p~-~~t~~~li~a~ 628 (850)
.+.|+++.+ +.|+ ...|..+-..+
T Consensus 359 ~~~~~~a~~--~~p~~~~a~~~lg~~~ 383 (388)
T 1w3b_A 359 LMHYKEAIR--ISPTFADAYSNMGNTL 383 (388)
T ss_dssp HHHHHHHHT--TCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHh--hCCCCHHHHHhHHHHH
Confidence 777777775 3443 44444444433
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2.8e-19 Score=203.38 Aligned_cols=441 Identities=11% Similarity=-0.013 Sum_probs=277.0
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+...+..+.+.|++++|+..|++++...+++ ..+......+...|++++|+..|+++++. .|+.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~-- 72 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDP---------VFYSNLSACYVSVGDLKKVVEMSTKALEL--KPDY-- 72 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCH---------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSCC--
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccH---------HHHHhHHHHHHHHhhHHHHHHHHHHHhcc--ChHH--
Confidence 6778889999999999999999999999985332 12233344667899999999999999954 6654
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC------CCCcchH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV------PRADILF 224 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------p~~~~~~ 224 (850)
..++...+..+...|++++|+..|+++.... |.+.......+..+........+.+.+..+ |+. ..+
T Consensus 73 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~ 145 (514)
T 2gw1_A 73 ----SKVLLRRASANEGLGKFADAMFDLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTE-LST 145 (514)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC-----------------
T ss_pred ----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccC
Confidence 4566677778889999999999999998876 433333333333222211111111111000 000 000
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCC
Q 003082 225 CNFVREFGKKRDLVSALRAYDASKKHLS---------SPNMYICRTIIDVCGI---CGDYMKSRAIYEDLRS-----QNV 287 (850)
Q Consensus 225 ~~li~~~~~~g~~~~A~~~~~~m~~~g~---------~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~ 287 (850)
..-...............+...+..... +.+...+......+.. .|++++|+..|+++.+ ..-
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 225 (514)
T 2gw1_A 146 QPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDK 225 (514)
T ss_dssp -----------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhcc
Confidence 0000000000111111111111111100 1123444444444443 6777777777777665 211
Q ss_pred CcC--------HHHHHHHHHh--hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcC
Q 003082 288 TLN--------IYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357 (850)
Q Consensus 288 ~pd--------~~t~~~ll~~--~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g 357 (850)
.|+ ..++..+... ..|+++.|...|+++.+.. |+...+..+...+...|++++|...|+.+.+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 299 (514)
T 2gw1_A 226 NNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKL---- 299 (514)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT----
T ss_pred CccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc----
Confidence 111 1222222222 2356666666666665543 23667777778888888888888888877652
Q ss_pred CcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003082 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437 (850)
Q Consensus 358 ~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ 437 (850)
.+.+...|..+...|...|++++|...|++..+.... +...+..+...+...|++++|...|+++.+.. +.+...+.
T Consensus 300 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 376 (514)
T 2gw1_A 300 -DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPN 376 (514)
T ss_dssp -CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHH
T ss_pred -CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHH
Confidence 2335567777788888888888888888888776433 56677778888888888888888888887653 33566777
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHH
Q 003082 438 ILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTT 517 (850)
Q Consensus 438 ~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t 517 (850)
.+...|.+.|++++|...++.+.....
T Consensus 377 ~la~~~~~~~~~~~A~~~~~~a~~~~~----------------------------------------------------- 403 (514)
T 2gw1_A 377 FFAEILTDKNDFDKALKQYDLAIELEN----------------------------------------------------- 403 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-----------------------------------------------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhhh-----------------------------------------------------
Confidence 788888888888888888876543210
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003082 518 YNILMKACCTDYYRVKALMNEMRTVG-LSPNHISWTILIDACGG---SGNVEGALQILKIMREDGMSPDVVAYTTAIKVC 593 (850)
Q Consensus 518 ~~~li~~~~~~~~~a~~l~~~m~~~g-~~p~~~ty~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~ 593 (850)
... ..-....|..+...|.+ .|++++|...++++.+.. +.+..+|..+...|
T Consensus 404 -----------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 459 (514)
T 2gw1_A 404 -----------------------KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMK 459 (514)
T ss_dssp -----------------------TSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred -----------------------ccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 000 00014478888889999 999999999999998753 34677888999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHH
Q 003082 594 VRSKRLKQAFSLFEEMKHYQIQPNLV 619 (850)
Q Consensus 594 ~~~g~~~~A~~l~~~m~~~g~~p~~~ 619 (850)
.+.|++++|.+.|++..+. .|+..
T Consensus 460 ~~~g~~~~A~~~~~~a~~~--~~~~~ 483 (514)
T 2gw1_A 460 LQQEDIDEAITLFEESADL--ARTME 483 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CSSHH
T ss_pred HHhcCHHHHHHHHHHHHHh--ccccH
Confidence 9999999999999999874 46543
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.85 E-value=1.1e-18 Score=194.91 Aligned_cols=333 Identities=12% Similarity=0.047 Sum_probs=217.6
Q ss_pred hhhccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHH
Q 003082 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (850)
Q Consensus 59 ~l~~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~ 138 (850)
+.+.+..+|+. ...+..++..+.+.|++++|+.+|+.+++. .|.... .+......+...|++++|+..|++
T Consensus 15 ~~~~~~~~p~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 15 TENLYFQSMAD-VEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYI------AYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp --------CHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccccHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHH------HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44556677777 889999999999999999999999999987 444322 222334456689999999999999
Q ss_pred HHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCc---ccHHHHHHHHHcCCChHHHHHHhh
Q 003082 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKEL---DEEFRIVQLCVNKPDVNLAIRYAC 215 (850)
Q Consensus 139 ~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~ 215 (850)
+.+. .|+. ..++...+..+...|++++|+..|+++.+.. |+.. ..+..++..+..
T Consensus 86 al~~--~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~------------ 143 (450)
T 2y4t_A 86 VIQL--KMDF------TAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEM------------ 143 (450)
T ss_dssp HHHH--CTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHH------------
T ss_pred HHhc--CCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHH------------
Confidence 9954 5654 4556666777888999999999999998765 6554 455444333110
Q ss_pred hCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHH
Q 003082 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN 295 (850)
Q Consensus 216 ~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~ 295 (850)
..+..++..|.+.|++++|+..|+.+.+.. +.+..++..+..+|.+.|++++|+..|+++.+.. +.+..+|.
T Consensus 144 ------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 215 (450)
T 2y4t_A 144 ------QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFY 215 (450)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHH
T ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 112233344444555555555555544432 1234444555555555555555555555544321 12233333
Q ss_pred HHHHh--hcCChHHHHHHHHHHHHcCCCCCHHHHH------------HHHHHHHHcCChHHHHHHHHHHHHhhhcCCccc
Q 003082 296 SLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYN------------ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361 (850)
Q Consensus 296 ~ll~~--~~~~~~~a~~l~~~m~~~g~~pd~~t~~------------~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~ 361 (850)
.+..+ ..|++++|++.|+++.+.. +.+...+. .+...|.+.|++++|...|+.+.+. .|
T Consensus 216 ~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~------~p 288 (450)
T 2y4t_A 216 KISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT------EP 288 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CC
Confidence 33332 2245555555555554332 12223333 3488899999999999999999873 34
Q ss_pred C-----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHH
Q 003082 362 D-----VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN-SQC 435 (850)
Q Consensus 362 d-----~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~ 435 (850)
+ ...|..+...+.+.|++++|...++++.+.. +.+..+|..+..+|...|++++|...|+++.+. .|+ ...
T Consensus 289 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~ 365 (450)
T 2y4t_A 289 SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQI 365 (450)
T ss_dssp SSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHH
T ss_pred cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHH
Confidence 4 4578889999999999999999999998764 237899999999999999999999999999874 444 455
Q ss_pred HHHHH
Q 003082 436 CNILL 440 (850)
Q Consensus 436 ~~~ll 440 (850)
+..+.
T Consensus 366 ~~~l~ 370 (450)
T 2y4t_A 366 REGLE 370 (450)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.85 E-value=5.5e-18 Score=189.31 Aligned_cols=196 Identities=9% Similarity=0.009 Sum_probs=106.4
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhc
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKK 234 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~ 234 (850)
...+...+..+...|++++|+..|++++... |+.. .++..++..|...
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~------------------------------~~~~~l~~~~~~~ 73 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNY------------------------------IAYYRRATVFLAM 73 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH------------------------------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccH------------------------------HHHHHHHHHHHHC
Confidence 4445555566667777777777777776543 4333 4555666666666
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH----HHHHHHHHh----------
Q 003082 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI----YVFNSLMNV---------- 300 (850)
Q Consensus 235 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~ll~~---------- 300 (850)
|++++|+..|+.+.+.++ .+..++..+..+|.+.|++++|...|+.+.+. .|+. ..+..+...
T Consensus 74 g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a 150 (450)
T 2y4t_A 74 GKSKAALPDLTKVIQLKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQA 150 (450)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666665432 34556666666666666666666666666654 2332 233333221
Q ss_pred ----hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhc
Q 003082 301 ----NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376 (850)
Q Consensus 301 ----~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~ 376 (850)
..|++++|++.|+++.+.. +.+..++..+..+|.+.|++++|.+.|+.+.+. .+.+..+|..+...|...
T Consensus 151 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~ 224 (450)
T 2y4t_A 151 LNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL-----KNDNTEAFYKISTLYYQL 224 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH-----HCSCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHc
Confidence 1234444444444444332 234445555555555555555555555555442 122344555555555555
Q ss_pred CCHHHHHHHHHHHHH
Q 003082 377 KWWQMALKVKEDMLS 391 (850)
Q Consensus 377 g~~~~A~~l~~~m~~ 391 (850)
|++++|...|+++..
T Consensus 225 g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 225 GDHELSLSEVRECLK 239 (450)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555544
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.8e-18 Score=196.78 Aligned_cols=437 Identities=9% Similarity=-0.007 Sum_probs=300.8
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHH
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVRE 230 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~ 230 (850)
.+.+...+..+.+.|++++|+..|++++... | +...+..++.++...|++++|+..++.+ |.+..++..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--E-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--c-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 3455666677778999999999999998876 5 4567777888888888888888877653 6666778888888
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhh--cCChHHH
Q 003082 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFT 308 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~--~~~~~~a 308 (850)
|.+.|++++|+..|+.+.+.+. ++......++..+........+.+.+..+...+..|+...++.-.... .......
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 8888888888888888877653 333344444444444444444444443333332222222222111110 0111111
Q ss_pred HHHHHHHHHcCC---------CCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHH-----hhhcCCc----ccCHhHHH
Q 003082 309 LEVYKNMQKLGV---------MADMASYNILLKACCL---AGNTVLAQEIYGEVKH-----LEAKGVL----KLDVFTYS 367 (850)
Q Consensus 309 ~~l~~~m~~~g~---------~pd~~t~~~Ll~~~~~---~g~~~~A~~i~~~m~~-----~~~~g~~----~~d~~ty~ 367 (850)
..+...+..... +.+...+..+...+.. .|++++|...|+++.+ ....... +.+..+|.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 111111111111 1124444444444444 8999999999998876 2100000 23456788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Q 003082 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447 (850)
Q Consensus 368 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g 447 (850)
.+...+...|++++|...|+++.+... +..+|..+...+...|++++|...++++.+.. +.+...+..+...|...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 888999999999999999999988654 38889999999999999999999999998764 446778899999999999
Q ss_pred CHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHh-
Q 003082 448 QFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC- 526 (850)
Q Consensus 448 ~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~- 526 (850)
++++|...|+...... +.+...+..+...+.
T Consensus 319 ~~~~A~~~~~~~~~~~------------------------------------------------~~~~~~~~~l~~~~~~ 350 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD------------------------------------------------PENIFPYIQLACLAYR 350 (514)
T ss_dssp CTTHHHHHHHHHHHTC------------------------------------------------SSCSHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHhC------------------------------------------------hhhHHHHHHHHHHHHH
Confidence 9999999999876532 224456666666665
Q ss_pred -ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHH---cC
Q 003082 527 -TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGM-SPD----VVAYTTAIKVCVR---SK 597 (850)
Q Consensus 527 -~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~ty~~li~~~~~---~g 597 (850)
++.++|...++.+.+.. +.+..+|..+...|.+.|++++|...++++.+..- .++ ...|..+...|.. .|
T Consensus 351 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 429 (514)
T 2gw1_A 351 ENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429 (514)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT
T ss_pred cCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC
Confidence 57899999999988753 23567899999999999999999999999976321 122 4489999999999 99
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcC
Q 003082 598 RLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAG 651 (850)
Q Consensus 598 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~~g 651 (850)
++++|.+.|+++.+.. ..+..++..+...+.+.|++++ |...|++..+..
T Consensus 430 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~---A~~~~~~a~~~~ 479 (514)
T 2gw1_A 430 NFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDE---AITLFEESADLA 479 (514)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHhc
Confidence 9999999999998743 3467888999999999999888 666788877643
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.84 E-value=1.9e-18 Score=197.92 Aligned_cols=420 Identities=11% Similarity=0.001 Sum_probs=298.7
Q ss_pred HHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHH
Q 003082 119 GIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIV 198 (850)
Q Consensus 119 ~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 198 (850)
....+...|++++|+..|+++++. .|+. ..++...+..+...|++++|++.++++++.. |+....+..++
T Consensus 31 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la 100 (537)
T 3fp2_A 31 RGNHFFTAKNFNEAIKYYQYAIEL--DPNE------PVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHTTCCC-CHHHHHHHHHH--CTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhh--CCCC------cHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHH
Confidence 344566899999999999999954 6654 4566667777888999999999999998875 77888888889
Q ss_pred HHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCH
Q 003082 199 QLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHL------SSPNMYICRTIIDVCGICGDY 272 (850)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g~~ 272 (850)
..+...|++++|+..|+.+...+......+..+...+...+|+..++.+.... ..|+.. .+..+....+.
T Consensus 101 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~ 176 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT----SLASFFGIFDS 176 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH----HHHHHHHTSCH
T ss_pred HHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHh----HHHHHHHhcCh
Confidence 99999999999998886554333333344556666667788888888886531 123333 23334455566
Q ss_pred HHHHHHHHHHHhCCCCcCHH-HHHHHHHhhc----------CChHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHH
Q 003082 273 MKSRAIYEDLRSQNVTLNIY-VFNSLMNVNA----------HDLKFTLEVYKNMQKLGVMAD-------MASYNILLKAC 334 (850)
Q Consensus 273 ~~A~~~~~~m~~~g~~pd~~-t~~~ll~~~~----------~~~~~a~~l~~~m~~~g~~pd-------~~t~~~Ll~~~ 334 (850)
+.+...+...... .+... ....+...+. ++++.|..+|+++.+.. +.+ ..++..+...+
T Consensus 177 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 177 HLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp HHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHH
Confidence 6555544432221 22222 2222222221 36778888888887653 222 23566777788
Q ss_pred HHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 003082 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414 (850)
Q Consensus 335 ~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 414 (850)
...|++++|...|+.+.+ ..|+...|..+...|...|++++|...|+++.+.... +..+|..+...+...|++
T Consensus 254 ~~~~~~~~A~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESIN------LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHTTCHHHHHHHHHHHHH------HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HhcccHHHHHHHHHHHHh------cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCH
Confidence 889999999999999887 4567778888888999999999999999999876533 688899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCC
Q 003082 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP 494 (850)
Q Consensus 415 ~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (850)
++|...|+++.+.. +.+...+..+...|.+.|++++|.+.++......
T Consensus 327 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------------------------------- 374 (537)
T 3fp2_A 327 KNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF------------------------------- 374 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------------
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------------------
Confidence 99999999998864 3456788889999999999999999998876542
Q ss_pred CCcCCCcccccccccCCCcCHHHHHHHHHHHh--ccHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHcC------
Q 003082 495 NFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGL-----SPNHISWTILIDACGGS------ 561 (850)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~--~~~~~a~~l~~~m~~~g~-----~p~~~ty~~li~~~~~~------ 561 (850)
+.+...+..+...+. ++.++|...|+.+.+... ......+..+...|.+.
T Consensus 375 -----------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 437 (537)
T 3fp2_A 375 -----------------PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPT 437 (537)
T ss_dssp -----------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC---
T ss_pred -----------------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccch
Confidence 233445555555554 578888888888765321 11223344555667777
Q ss_pred ----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003082 562 ----GNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHY 612 (850)
Q Consensus 562 ----g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 612 (850)
|++++|...|+++.+.. +.+...|..+..+|.+.|++++|.+.|++..+.
T Consensus 438 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 438 QLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp -CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999998753 346788899999999999999999999999874
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.82 E-value=1.2e-16 Score=182.79 Aligned_cols=325 Identities=8% Similarity=-0.026 Sum_probs=170.9
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+..++..+.+.|++++|+..|+++++. +|..... +......+...|++++|+..|+++.+. .|+.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~------~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~-- 92 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--DPNEPVF------YSNISACYISTGDLEKVIEFTTKALEI--KPDH-- 92 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHH--CTTCHHH------HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTC--
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh--CCCCcHH------HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCch--
Confidence 678889999999999999999999999998 4543322 223344566899999999999999954 6664
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCC----C---cch
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR----A---DIL 223 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~----~---~~~ 223 (850)
..++...+..+...|++++|+..|+.+ ... |+.... .+..+...+....|+..++..-. . ...
T Consensus 93 ----~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~--~~~~~~---~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~ 162 (537)
T 3fp2_A 93 ----SKALLRRASANESLGNFTDAMFDLSVL-SLN--GDFDGA---SIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLP 162 (537)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHH-C----------------CHHHHHHHHHHHHHHHHHCC-------CCCC
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHH-hcC--CCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence 456666777788899999999999743 322 322111 11222223333444444433210 0 011
Q ss_pred HHHHHHHHHhc------------------------------------------CChHHHHHHHHHHHhCCCCCC------
Q 003082 224 FCNFVREFGKK------------------------------------------RDLVSALRAYDASKKHLSSPN------ 255 (850)
Q Consensus 224 ~~~li~~~~~~------------------------------------------g~~~~A~~~~~~m~~~g~~p~------ 255 (850)
....+..|... |++++|+.+|+.+.+..+...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 242 (537)
T 3fp2_A 163 SNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENA 242 (537)
T ss_dssp CHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHH
T ss_pred hHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHH
Confidence 11122222223 355556666655555322110
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003082 256 MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333 (850)
Q Consensus 256 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~--~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~ 333 (850)
..++..+...+...|++++|...|+.+.+. .|+...+..+-..+ .|+++.|.+.|+++.+.. +.+..+|..+...
T Consensus 243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 319 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQM 319 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHH
Confidence 123444445555555566666665555543 23333333333322 245555555555554432 2234455555555
Q ss_pred HHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 003082 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413 (850)
Q Consensus 334 ~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 413 (850)
+...|++++|...|+.+.+. .+.+...|..+...|...|++++|...++++.+... .+...+..+...+...|+
T Consensus 320 ~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~ 393 (537)
T 3fp2_A 320 YFILQDYKNAKEDFQKAQSL-----NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGD 393 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-----CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTC
T ss_pred HHhcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCC
Confidence 55555555555555555442 112234455555555555555555555555554321 134445555555555555
Q ss_pred HHHHHHHHHHHHH
Q 003082 414 VEQAMHLFEEMLQ 426 (850)
Q Consensus 414 ~~~A~~l~~~m~~ 426 (850)
+++|...|+++.+
T Consensus 394 ~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 394 FDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 13
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.78 E-value=4.4e-19 Score=202.23 Aligned_cols=117 Identities=15% Similarity=0.160 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003082 549 ISWTILIDACGGSGNVEGALQILKIMRE---DGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLL 625 (850)
Q Consensus 549 ~ty~~li~~~~~~g~~~~A~~l~~~m~~---~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 625 (850)
.|||+||++||+.|++++|..+|++|.+ .|+.||++|||+||++||+.|++++|.++|++|.+.|+.||.+|||+||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3555555555555555555555544432 2455555555555555555555555555555555555555555555555
Q ss_pred HHHHhcCCh-HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003082 626 RARSRYGSL-HEVQQCLAVYQDMWKAGYKANDTYLKELIEEWCE 668 (850)
Q Consensus 626 ~a~~~~g~~-~~a~~a~~l~~~M~~~g~~p~~~~~~~li~~~~~ 668 (850)
+++|+.|+. ++ |.++|++|.+.|+.||..+|++++.+..+
T Consensus 208 ~glcK~G~~~e~---A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 208 QCMGRQDQDAGT---IERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHTCCHHH---HHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHhCCCcHHH---HHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 555555542 22 34455555555555555555544444444
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.77 E-value=1.5e-15 Score=163.50 Aligned_cols=325 Identities=15% Similarity=0.069 Sum_probs=213.6
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
+..+..++..+...|++++|+..|+.+++. .|..... +......+...|++++|+..|+++.+. .|+.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~------~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~-- 70 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIA------YYRRATVFLAMGKSKAALPDLTKVIAL--KMDF-- 70 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH------HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTC--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHH------HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCc--
Confidence 667888999999999999999999999988 4443222 223334566889999999999999954 5654
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCC---CCcccHHHH------------HHHHHcCCChHHHHHHhh
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPV---KELDEEFRI------------VQLCVNKPDVNLAIRYAC 215 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~A~~~~~ 215 (850)
..++...+..+...|++++|+..++++.+.. | +....+..+ +..+...|++++|+.+++
T Consensus 71 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 144 (359)
T 3ieg_A 71 ----TAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLD 144 (359)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----chHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 3556667777888999999999999998765 5 454445444 344455555555555544
Q ss_pred hC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH
Q 003082 216 IV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291 (850)
Q Consensus 216 ~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 291 (850)
.+ |.+..++..++..|...|++++|+..|+.+.+.. +.+..++..+...|...|++++|...|+...+.. |+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~ 221 (359)
T 3ieg_A 145 KILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDH 221 (359)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTC
T ss_pred HHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccc
Confidence 32 4444445555555555555555555555555432 1244455555555555555555555555544321 111
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCH-----hHH
Q 003082 292 YVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-----FTY 366 (850)
Q Consensus 292 ~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~-----~ty 366 (850)
.. +...+..+. .......+...+.+.|++++|...|+.+.+. .|+. ..|
T Consensus 222 ~~--------------~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~ 275 (359)
T 3ieg_A 222 KR--------------CFAHYKQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKT------EPSVAEYTVRSK 275 (359)
T ss_dssp HH--------------HHHHHHHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCSSHHHHHHHH
T ss_pred hH--------------HHHHHHHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCchHHHHHHH
Confidence 00 001111110 1112223466788999999999999998873 3332 235
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003082 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (850)
Q Consensus 367 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~ 444 (850)
..+...|...|++++|...+++..+... .+..+|..+...+.+.|++++|...|++..+.. +-+...+..+..+..
T Consensus 276 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 276 ERICHCFSKDEKPVEAIRICSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 5677889999999999999999988642 378899999999999999999999999998753 233455555555443
No 15
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=8.4e-19 Score=199.96 Aligned_cols=130 Identities=16% Similarity=0.187 Sum_probs=118.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003082 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400 (850)
Q Consensus 321 ~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 400 (850)
..-..|||+||++||+.|++++|.++|++|.++..+| +.||++|||+||++||+.|++++|.++|++|.+.|+.||.+|
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG-~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR-KLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHH-TTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC-CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 3456799999999999999999999999998765566 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHH
Q 003082 401 WSSLINACANAGL-VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451 (850)
Q Consensus 401 y~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 451 (850)
||+||+++|+.|+ .++|.++|++|.+.|+.||..+|++++.++.+.+-++.
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~ 254 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA 254 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHH
Confidence 9999999999998 58899999999999999999999999987766543333
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.74 E-value=1.5e-14 Score=155.46 Aligned_cols=296 Identities=10% Similarity=0.023 Sum_probs=240.3
Q ss_pred HHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHH
Q 003082 156 KLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREF 231 (850)
Q Consensus 156 ~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~ 231 (850)
+.+...+..+...|++++|+..|+++++.. |+....+..++..+...|++++|+..++.+ |....++..++..|
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 455666777788999999999999998865 778888999999999999999999998763 77778899999999
Q ss_pred HhcCChHHHHHHHHHHHhCCCC--CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHH
Q 003082 232 GKKRDLVSALRAYDASKKHLSS--PNMYICRTI------------IDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (850)
Q Consensus 232 ~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 297 (850)
...|++++|+..|+.+.+..+. .+...+..+ ...+...|++++|+..|+.+.+... .+...+..+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~ 160 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELR 160 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 9999999999999999985321 234445544 5788999999999999999987632 344455544
Q ss_pred HHh--hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHH--------
Q 003082 298 MNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS-------- 367 (850)
Q Consensus 298 l~~--~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~-------- 367 (850)
... ..|++++|.+.+++..+.. +.+..++..+...+...|++++|...|+...+.. +.+...+.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-----QDHKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----ccchHHHHHHHHHHHH
Confidence 444 4689999999999998864 5578899999999999999999999999988741 22333333
Q ss_pred ----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003082 368 ----TIVKVFADAKWWQMALKVKEDMLSAGVTPNT----ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (850)
Q Consensus 368 ----~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 439 (850)
.+...+.+.|++++|...++++.+.... +. ..+..+...+.+.|++++|...|++..+.. +.+..++..+
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 312 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDR 312 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 2356688999999999999999876433 33 235567789999999999999999999863 4478889999
Q ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Q 003082 440 LQACVEACQFDRAFRLFRSWTLS 462 (850)
Q Consensus 440 l~~~~~~g~~~~A~~l~~~m~~~ 462 (850)
...|.+.|++++|.+.|+...+.
T Consensus 313 ~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 313 AEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999999999999988753
No 17
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.71 E-value=3.5e-12 Score=150.53 Aligned_cols=406 Identities=12% Similarity=0.104 Sum_probs=273.1
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
++--...+.+|+..|.+.+|+.++++++-. |+.|....... ..++....+. +.....+...+.... .
T Consensus 985 PeeVs~~vKaf~~aglp~EaieLLEKivl~---~s~fs~n~~Lq--nlLi~tAIka-D~~Rv~eyI~kLd~~--d----- 1051 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADLPNELIELLEKIVLD---NSVFSEHRNLQ--NLLILTAIKA-DRTRVMEYINRLDNY--D----- 1051 (1630)
T ss_pred HHHhHHHHHHHHhCCCHHHHHHHHHHHHcC---CCcccccHHHH--HHHHHHHHHh-ChhhHHHHHHHhhhc--c-----
Confidence 444456777888999999999999999833 33222111111 1122222232 333344443333211 0
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~ 230 (850)
.. ..+..+.+.|.++||..+|++... . ...+...+...+++++|.+++++. ..+.+|..++.+
T Consensus 1052 ----~~---eIA~Iai~lglyEEAf~IYkKa~~----~-----~~A~~VLie~i~nldrAiE~Aerv-n~p~vWsqLAKA 1114 (1630)
T 1xi4_A 1052 ----AP---DIANIAISNELFEEAFAIFRKFDV----N-----TSAVQVLIEHIGNLDRAYEFAERC-NEPAVWSQLAKA 1114 (1630)
T ss_pred ----HH---HHHHHHHhCCCHHHHHHHHHHcCC----H-----HHHHHHHHHHHhhHHHHHHHHHhc-CCHHHHHHHHHH
Confidence 11 123445568999999999997521 1 122233344788999999998876 446889999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhc--CChHHH
Q 003082 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFT 308 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~--~~~~~a 308 (850)
+.+.|++++|+..|... .|...|..++.+|.+.|++++|.+.|....+..-.|...+. +..+++ +++++
T Consensus 1115 ql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~--LafaYAKl~rlee- 1185 (1630)
T 1xi4_A 1115 QLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETE--LIFALAKTNRLAE- 1185 (1630)
T ss_pred HHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHH--HHHHHHhhcCHHH-
Confidence 99999999999999653 46778888999999999999999999887765423334443 444433 45553
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 003082 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (850)
Q Consensus 309 ~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~ 388 (850)
.+-| ++ .++...|..+...|...|++++|..+|... ..|..+...|++.|++++|.+.+++
T Consensus 1186 le~f---I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------------~ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A 1186 LEEF---IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------------SNFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred HHHH---Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------------hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 2222 22 456777888999999999999999999863 3689999999999999999999988
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccc
Q 003082 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVAL 468 (850)
Q Consensus 389 m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~ 468 (850)
. -+..+|..+-.+|...|++..|...... +..+...+..++..|.+.|.+++|..+++.....+
T Consensus 1247 A------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le----- 1310 (1630)
T 1xi4_A 1247 A------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE----- 1310 (1630)
T ss_pred h------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-----
Confidence 6 2779999999999999999999887654 34566778899999999999999999997665321
Q ss_pred cCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhc----cHHHHHHHHHHHHHcCC
Q 003082 469 GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT----DYYRVKALMNEMRTVGL 544 (850)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~----~~~~a~~l~~~m~~~g~ 544 (850)
.-....|+-+...+++ +..++.++|..-. .+
T Consensus 1311 -------------------------------------------raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni 1345 (1630)
T 1xi4_A 1311 -------------------------------------------RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NI 1345 (1630)
T ss_pred -------------------------------------------hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--cc
Confidence 1233445555566664 2334444444221 22
Q ss_pred CC------CHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-----------CCCCCCHHHHHHHHHHHHH
Q 003082 545 SP------NHISWTILIDACGGSGNVEGALQILKIMRE-----------DGMSPDVVAYTTAIKVCVR 595 (850)
Q Consensus 545 ~p------~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-----------~g~~pd~~ty~~li~~~~~ 595 (850)
+| +...|.-++-.|.+.|+++.|....-+-.. ..-..|...|--.+.-|..
T Consensus 1346 ~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~ 1413 (1630)
T 1xi4_A 1346 PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE 1413 (1630)
T ss_pred chHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHh
Confidence 22 566899999999999999998843211100 0113456666666666663
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.71 E-value=6.7e-15 Score=156.39 Aligned_cols=293 Identities=12% Similarity=0.016 Sum_probs=213.8
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+..++..+...|++++|+.+|+++++. +|....... .....+...|++++|+..++++.+. .|+.
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~------~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~-- 89 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEK--DPFHASCLP------VHIGTLVELNKANELFYLSHKLVDL--YPSN-- 89 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTTHH------HHHHHHHHHTCHHHHHHHHHHHHHH--CTTS--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCChhhHH------HHHHHHHHhhhHHHHHHHHHHHHHh--CcCC--
Confidence 567778899999999999999999999988 444432221 1223345889999999999999954 5554
Q ss_pred chhhhHHHHHHHHhhhhcC-cHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHH
Q 003082 151 DGSGFKLLKNECQRLLDSG-EVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFC 225 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~ 225 (850)
..++...+..+...| ++++|+..+++.++.. |+....+..++..+...|++++|+..++.+ |.....+.
T Consensus 90 ----~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 163 (330)
T 3hym_B 90 ----PVSWFAVGCYYLMVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPML 163 (330)
T ss_dssp ----THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHH
T ss_pred ----HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHH
Confidence 345556666777889 9999999999998765 777777888888888888888888877653 66667777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCCh
Q 003082 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDL 305 (850)
Q Consensus 226 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~ 305 (850)
.++..|...|++++|+..|+++.+.. +.+..++..+...|...|++++|...|++..+..
T Consensus 164 ~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------------- 223 (330)
T 3hym_B 164 YIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI------------------- 223 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHh-------------------
Confidence 78888888888888888888887753 2456778888888888888888888887765320
Q ss_pred HHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHH
Q 003082 306 KFTLEVYKNMQ-KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALK 384 (850)
Q Consensus 306 ~~a~~l~~~m~-~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~ 384 (850)
.... ....+.+..++..+...|.+.|++++|...|++..+. .+.+...|..+...|.+.|++++|..
T Consensus 224 -------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~ 291 (330)
T 3hym_B 224 -------KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL-----IPQNASTYSAIGYIHSLMGNFENAVD 291 (330)
T ss_dssp -------TTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred -------hhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh-----CccchHHHHHHHHHHHHhccHHHHHH
Confidence 0000 0011334568888888888999999999998888764 13356677788888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHH-HHcCCH
Q 003082 385 VKEDMLSAGVTPNTITWSSLINAC-ANAGLV 414 (850)
Q Consensus 385 l~~~m~~~g~~p~~~ty~~li~~~-~~~g~~ 414 (850)
.|++..+... .+...+..+..++ ...|+.
T Consensus 292 ~~~~al~~~p-~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 292 YFHTALGLRR-DDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHTTTTTCS-CCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHccCC-CchHHHHHHHHHHHHHhCch
Confidence 8888776532 2566677776666 344543
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.70 E-value=9.3e-15 Score=155.26 Aligned_cols=289 Identities=11% Similarity=-0.030 Sum_probs=230.1
Q ss_pred HHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHH
Q 003082 156 KLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREF 231 (850)
Q Consensus 156 ~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~ 231 (850)
+.++..+..+...|++++|+++++++++.. |.....+..++..+...|++++|+.+++.+ |.+..++..++..|
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYY 100 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 345555666778899999999999998775 777778888899999999999999988663 77788999999999
Q ss_pred HhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-cCHHHHHHHHHhhcCChHHHH
Q 003082 232 GKKR-DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNIYVFNSLMNVNAHDLKFTL 309 (850)
Q Consensus 232 ~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd~~t~~~ll~~~~~~~~~a~ 309 (850)
...| ++++|+..|+.+.+... .+...|..+...+...|++++|+..|+.+.+.... +........+....|++++|.
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHH
Confidence 9999 99999999999998642 35678999999999999999999999999876432 223333333334568999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCC----cccCHhHHHHHHHHHHhcCCHHHHHHH
Q 003082 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV----LKLDVFTYSTIVKVFADAKWWQMALKV 385 (850)
Q Consensus 310 ~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~----~~~d~~ty~~li~~~~~~g~~~~A~~l 385 (850)
+.|++..+.. +.+...+..+...+...|++++|...|++..+...... .+.+..+|..+...|...|++++|...
T Consensus 180 ~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 180 RFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999998764 45678899999999999999999999998887532111 123456888999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCHH
Q 003082 386 KEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC-VEACQFD 450 (850)
Q Consensus 386 ~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~-~~~g~~~ 450 (850)
+++..+.... +...|..+...+.+.|++++|...|++..+.. +.+...+..+..++ ...|+.+
T Consensus 259 ~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 259 HRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 9999876533 67889999999999999999999999987653 33566777777766 3455543
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.70 E-value=1.9e-15 Score=163.64 Aligned_cols=289 Identities=14% Similarity=0.010 Sum_probs=196.1
Q ss_pred hcCchhHHHH-HHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHc
Q 003082 125 REGRIDCVVG-VLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVN 203 (850)
Q Consensus 125 ~~g~~~~A~~-~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (850)
..|++++|+. .|+++. .+.|+... .....+...+..+...|++++|+..++++++.. |+..
T Consensus 37 ~~~~~~~a~~~~~~~a~--~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~------------ 98 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGY--QFEEENPL--RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHM------------ 98 (368)
T ss_dssp ---------CHHHHCCC--CCCSSCTT--TTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCH------------
T ss_pred HHHHHHHHHhhhhhHHH--hcCCCCcc--cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCH------------
Confidence 3477777777 777766 44444321 012234455566667788888888887777654 4443
Q ss_pred CCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003082 204 KPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (850)
Q Consensus 204 ~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (850)
.++..++..|.+.|++++|+..|+++.+.. +.+..++..+..+|...|++++|+..|+.+.
T Consensus 99 ------------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 159 (368)
T 1fch_A 99 ------------------EAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWL 159 (368)
T ss_dssp ------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445555666666666666666666665543 2355566666666666666666666666665
Q ss_pred hCCCCcCHH------------------HHHHHHHhhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCChHHHH
Q 003082 284 SQNVTLNIY------------------VFNSLMNVNAHDLKFTLEVYKNMQKLGVM-ADMASYNILLKACCLAGNTVLAQ 344 (850)
Q Consensus 284 ~~g~~pd~~------------------t~~~ll~~~~~~~~~a~~l~~~m~~~g~~-pd~~t~~~Ll~~~~~~g~~~~A~ 344 (850)
+........ ....++ ..|++++|.+.|+++.+.... ++..++..+...|.+.|++++|.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 237 (368)
T 1fch_A 160 RYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL--SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV 237 (368)
T ss_dssp HTSTTTGGGCC---------------CTTHHHH--HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh--hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 542111100 011111 446778888888888775422 15889999999999999999999
Q ss_pred HHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003082 345 EIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424 (850)
Q Consensus 345 ~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m 424 (850)
..|+++.+. .+.+..+|..+...|...|++++|...|+++.+... .+..++..+...|.+.|++++|...|+++
T Consensus 238 ~~~~~al~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 311 (368)
T 1fch_A 238 DCFTAALSV-----RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEA 311 (368)
T ss_dssp HHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHh-----CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999998874 234577899999999999999999999999987643 36889999999999999999999999998
Q ss_pred HHcCCC----------CCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003082 425 LQAGCE----------PNSQCCNILLQACVEACQFDRAFRLFRS 458 (850)
Q Consensus 425 ~~~g~~----------p~~~~~~~ll~~~~~~g~~~~A~~l~~~ 458 (850)
.+.... ....+|..+..+|.+.|++++|..+++.
T Consensus 312 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 312 LNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 874211 1267899999999999999999998863
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=4.2e-13 Score=152.99 Aligned_cols=334 Identities=9% Similarity=0.011 Sum_probs=183.6
Q ss_pred hccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHH
Q 003082 61 STVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLN 140 (850)
Q Consensus 61 ~~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~ 140 (850)
+++..+|.+ ...|..++. +.+.|++++|..+|+++++. .|........ .+....+.|++++|..+|++++
T Consensus 4 ~al~~~P~~-~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~------~~~~~~~~~~~~~a~~~~~ral 73 (530)
T 2ooe_A 4 KKLEENPYD-LDAWSILIR-EAQNQPIDKARKTYERLVAQ--FPSSGRFWKL------YIEAEIKAKNYDKVEKLFQRCL 73 (530)
T ss_dssp HHHHHCTTC-HHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--CTTCHHHHHH------HHHHHHHTTCHHHHHHHHHHHT
T ss_pred hHhhhCCCC-HHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--CCCCHHHHHH------HHHHHHhcCCHHHHHHHHHHHH
Confidence 356677877 888888888 47889999999999999987 5554433222 2233447899999999999998
Q ss_pred HcCCCCccccchhhhHHHHHHHH-hhhhcCcHHHHHH----HHHHHHhC-CCCCCCcccHHHHHHHHHcCCChHHHHHHh
Q 003082 141 ELGVAPLELFDGSGFKLLKNECQ-RLLDSGEVEMFVG----LMEVLEEF-RLPVKELDEEFRIVQLCVNKPDVNLAIRYA 214 (850)
Q Consensus 141 ~~~~~p~~~~~~~~~~~l~~~~~-~~~~~g~~~~A~~----~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 214 (850)
...|+ .+++...+. .....|++++|.+ +|+..+.. +..+++...|...+......
T Consensus 74 --~~~p~-------~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~---------- 134 (530)
T 2ooe_A 74 --MKVLH-------IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGV---------- 134 (530)
T ss_dssp --TTCCC-------HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHS----------
T ss_pred --hcCCC-------hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcC----------
Confidence 44564 223333332 1123455555544 55554432 33333322332222211110
Q ss_pred hhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHH
Q 003082 215 CIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF 294 (850)
Q Consensus 215 ~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~ 294 (850)
+... .+...|+++.|..+|++.++....+....|..........|. .+.
T Consensus 135 ---~~~~--------~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~--------------------~~~ 183 (530)
T 2ooe_A 135 ---EAVG--------SYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI--------------------HLA 183 (530)
T ss_dssp ---CCCS--------STTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH--------------------HHH
T ss_pred ---CCcc--------cHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch--------------------hHH
Confidence 0000 012367888899999888873111112233322221100110 011
Q ss_pred HHHHHhhcCChHHHHHHHHHHH------HcC---CCCC--------HHHHHHHHHHHHHc----CCh----HHHHHHHHH
Q 003082 295 NSLMNVNAHDLKFTLEVYKNMQ------KLG---VMAD--------MASYNILLKACCLA----GNT----VLAQEIYGE 349 (850)
Q Consensus 295 ~~ll~~~~~~~~~a~~l~~~m~------~~g---~~pd--------~~t~~~Ll~~~~~~----g~~----~~A~~i~~~ 349 (850)
..++....+++..|..++..+. +.. ++|+ ...|...+...... ++. +.|..+|++
T Consensus 184 ~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~ 263 (530)
T 2ooe_A 184 KKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQ 263 (530)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHH
Confidence 1111111122333433333311 111 1232 13444444322221 122 356667776
Q ss_pred HHHhhhcCCcccCHhHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 003082 350 VKHLEAKGVLKLDVFTYSTIVKVFAD-------AKWWQ-------MALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415 (850)
Q Consensus 350 m~~~~~~g~~~~d~~ty~~li~~~~~-------~g~~~-------~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 415 (850)
.... .+.+...|..+...+.+ .|+++ +|..+|++..+.-.+-+...|..++..+.+.|+++
T Consensus 264 al~~-----~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~ 338 (530)
T 2ooe_A 264 CLLV-----LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYE 338 (530)
T ss_dssp HHHH-----HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHh-----CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHH
Confidence 6654 34566677777776664 67765 78888888765212225777888888888888888
Q ss_pred HHHHHHHHHHHcCCCCC-H-HHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 003082 416 QAMHLFEEMLQAGCEPN-S-QCCNILLQACVEACQFDRAFRLFRSWTL 461 (850)
Q Consensus 416 ~A~~l~~~m~~~g~~p~-~-~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 461 (850)
+|..+|+.+++. .|+ . ..|..++..+.+.|++++|.++|+....
T Consensus 339 ~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 339 KVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp HHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 888888888774 443 2 4677777777788888888888887653
No 22
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.69 E-value=5.4e-12 Score=148.93 Aligned_cols=310 Identities=12% Similarity=0.105 Sum_probs=198.3
Q ss_pred HHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003082 197 IVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276 (850)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 276 (850)
++..+...|.+++|..+|+++.....+...+ +...+++++|.++.++. -+..+|..+..++...|++++|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VL---ie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVL---IEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHH---HHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 5555555555555555555543222222222 22445555555555533 12344555555555555555555
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhc
Q 003082 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356 (850)
Q Consensus 277 ~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~ 356 (850)
..|.. - -|...|.-++..|.+.|++++|.+.|....+.
T Consensus 1126 dsYiK---------------------------------A------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~--- 1163 (1630)
T 1xi4_A 1126 DSYIK---------------------------------A------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--- 1163 (1630)
T ss_pred HHHHh---------------------------------c------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---
Confidence 55532 1 36666777888888888888888888776652
Q ss_pred CCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003082 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436 (850)
Q Consensus 357 g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~ 436 (850)
.++....+.++.+|++.+++++...+. . .++...|..+...|...|++++|..+|... ..|
T Consensus 1164 ---~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny 1224 (1630)
T 1xi4_A 1164 ---ARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 1224 (1630)
T ss_pred ---cccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHH
Confidence 234333445788888888887544332 1 346667777888888888888888888874 368
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHH
Q 003082 437 NILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516 (850)
Q Consensus 437 ~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 516 (850)
..+...|++.|++++|.+.+++. .+..
T Consensus 1225 ~rLA~tLvkLge~q~AIEaarKA-----------------------------------------------------~n~~ 1251 (1630)
T 1xi4_A 1225 GRLASTLVHLGEYQAAVDGARKA-----------------------------------------------------NSTR 1251 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHh-----------------------------------------------------CCHH
Confidence 88888888888888888888753 2445
Q ss_pred HHHHHHHHHhc--cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003082 517 TYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCV 594 (850)
Q Consensus 517 t~~~li~~~~~--~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~ 594 (850)
+|.-+-.+|.. ++..|...... +..+...+..++..|.+.|.+++|+.+++...... .-....|+-+...|+
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLya 1325 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 1325 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHH
Confidence 66655555543 34444443322 33466677889999999999999999998777543 334557777777777
Q ss_pred Hc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCChHHH
Q 003082 595 RS--KRLKQAFSLFEEMKHYQIQP------NLVTYITLLRARSRYGSLHEV 637 (850)
Q Consensus 595 ~~--g~~~~A~~l~~~m~~~g~~p------~~~t~~~li~a~~~~g~~~~a 637 (850)
+. ++..++.++|..-. .+.| +...|.-++--|.+.|.++.|
T Consensus 1326 Ky~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA 1374 (1630)
T 1xi4_A 1326 KFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 1374 (1630)
T ss_pred hCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 74 45666667666432 2333 466788888888888888875
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.68 E-value=1.9e-12 Score=145.93 Aligned_cols=347 Identities=12% Similarity=0.038 Sum_probs=268.0
Q ss_pred CcccHHHHHHHHHc----CCChHHHHHHhhhC--CCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHH
Q 003082 190 ELDEEFRIVQLCVN----KPDVNLAIRYACIV--PRADILFCNFVREFGK----KRDLVSALRAYDASKKHLSSPNMYIC 259 (850)
Q Consensus 190 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~~--p~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~ 259 (850)
++.....++..|.. .+++++|+.+|+.. ..+..++..|...|.. .+++++|+..|+...+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44556677777776 78888888888764 3445677888888888 889999999999888754 56777
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhh------cCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003082 260 RTIIDVCGI----CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN------AHDLKFTLEVYKNMQKLGVMADMASYNI 329 (850)
Q Consensus 260 ~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~------~~~~~~a~~l~~~m~~~g~~pd~~t~~~ 329 (850)
..|...|.. .+++++|+..|+...+.| +...+..|-..+ .++.+.|++.|++..+.| +...+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~ 188 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQ 188 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 778888887 788999999999888776 233333333322 458889999999888865 6778888
Q ss_pred HHHHHHH----cCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003082 330 LLKACCL----AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD----AKWWQMALKVKEDMLSAGVTPNTITW 401 (850)
Q Consensus 330 Ll~~~~~----~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~ty 401 (850)
|...|.. .++.++|.+.|+...+ ..+...+..+...|.. .+++++|...|++..+.| +...+
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~-------~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSAT-------SGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 8888887 8899999999988775 2356677777777776 789999999999988765 56677
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-----CCHHHHHHHHHHHhhccccccccCcc
Q 003082 402 SSLINACAN----AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA-----CQFDRAFRLFRSWTLSKTQVALGEDY 472 (850)
Q Consensus 402 ~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~-----g~~~~A~~l~~~m~~~~~~~~~~~~~ 472 (850)
..+...|.. .++.++|..+|++..+.| +...+..+...|... +++++|...|+...+.+
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~--------- 326 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--------- 326 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---------
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---------
Confidence 777777777 889999999999988765 556777777788777 89999999998776432
Q ss_pred CCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhc-----cHHHHHHHHHHHHHcCCCCC
Q 003082 473 DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT-----DYYRVKALMNEMRTVGLSPN 547 (850)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~-----~~~~a~~l~~~m~~~g~~p~ 547 (850)
+...+..+-..|.. +.++|...|+...+.| +
T Consensus 327 -----------------------------------------~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~ 362 (490)
T 2xm6_A 327 -----------------------------------------DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---E 362 (490)
T ss_dssp -----------------------------------------CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---C
T ss_pred -----------------------------------------CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---C
Confidence 22334444444432 5788999999888863 5
Q ss_pred HHHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCC
Q 003082 548 HISWTILIDACGG----SGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR----SKRLKQAFSLFEEMKHYQI 614 (850)
Q Consensus 548 ~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~ 614 (850)
...+..|...|.. .++.++|..+|++..+.| +...+..+...|.+ .++.++|...|++..+.|.
T Consensus 363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 6788888888888 899999999999999865 57788889999988 8999999999999998663
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.65 E-value=2.1e-12 Score=147.24 Aligned_cols=258 Identities=12% Similarity=0.062 Sum_probs=179.9
Q ss_pred cCChHHHHHHHHHHHHhhhcC-----CcccC--------HhHHHHHHHHHHhc----CCH----HHHHHHHHHHHHCCCC
Q 003082 337 AGNTVLAQEIYGEVKHLEAKG-----VLKLD--------VFTYSTIVKVFADA----KWW----QMALKVKEDMLSAGVT 395 (850)
Q Consensus 337 ~g~~~~A~~i~~~m~~~~~~g-----~~~~d--------~~ty~~li~~~~~~----g~~----~~A~~l~~~m~~~g~~ 395 (850)
.++++.|..++..+......- .+.|+ ...|...+...... ++. +.+..+|++.+....
T Consensus 191 ~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p- 269 (530)
T 2ooe_A 191 SRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG- 269 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-
Confidence 355677777776644321100 02333 24555555433222 222 477889999887532
Q ss_pred CCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 003082 396 PNTITWSSLINACAN-------AGLVE-------QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (850)
Q Consensus 396 p~~~ty~~li~~~~~-------~g~~~-------~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 461 (850)
-+...|..+...+.+ .|+++ +|..+|++..+.-.+-+...|..+...+.+.|++++|..+|+....
T Consensus 270 ~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~ 349 (530)
T 2ooe_A 270 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA 349 (530)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC
Confidence 368888888888876 79877 8999999988632344678899999999999999999999998875
Q ss_pred ccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcC--HHHHHHHHHHHh--ccHHHHHHHHH
Q 003082 462 SKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT--TTTYNILMKACC--TDYYRVKALMN 537 (850)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~t~~~li~~~~--~~~~~a~~l~~ 537 (850)
. .|+ ...|...+..+. ++.++|..+|+
T Consensus 350 ~-------------------------------------------------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 350 I-------------------------------------------------EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp S-------------------------------------------------SSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-------------------------------------------------cccCchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3 333 246666666654 46789999999
Q ss_pred HHHHcCCCCCHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CC
Q 003082 538 EMRTVGLSPNHISWTILIDA-CGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQ-IQ 615 (850)
Q Consensus 538 ~m~~~g~~p~~~ty~~li~~-~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g-~~ 615 (850)
...+... .+...|...... +...|+.++|..+|++..+.. +-+...|..++..+.+.|+.++|..+|++....+ ..
T Consensus 381 ~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 381 KAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred HHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence 9987522 233333332222 346899999999999998752 3367899999999999999999999999999853 33
Q ss_pred CC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 003082 616 PN--LVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649 (850)
Q Consensus 616 p~--~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~ 649 (850)
|+ ...|...+......|+.+.+ ..+++++.+
T Consensus 459 ~~~~~~lw~~~~~~e~~~G~~~~~---~~~~~r~~~ 491 (530)
T 2ooe_A 459 PEKSGEIWARFLAFESNIGDLASI---LKVEKRRFT 491 (530)
T ss_dssp GGGCHHHHHHHHHHHHHSSCHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHH---HHHHHHHHH
Confidence 32 55888888888889998774 445555543
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.64 E-value=1.5e-14 Score=156.47 Aligned_cols=275 Identities=11% Similarity=-0.022 Sum_probs=167.4
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+..++..+.+.|++++|+..|+++++. .|..... +......+...|++++|+..|+++.+. .|+.
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~------~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~-- 132 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEA------WQFLGITQAENENEQAAIVALQRCLEL--QPNN-- 132 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHH------HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC--
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCCHHH------HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCC--
Confidence 566888999999999999999999999988 4443222 233344566899999999999999954 5654
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~ 230 (850)
..++..++..+...|++++|+..++++++.. |+....+..++ .....+..++..
T Consensus 133 ----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~--------------------~~~~~~~~l~~~ 186 (365)
T 4eqf_A 133 ----LKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK--------------------GSPGLTRRMSKS 186 (365)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------------------------
T ss_pred ----HHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhc--------------------cchHHHHHHHHH
Confidence 4566677777888999999999999988754 43332222210 011334556777
Q ss_pred HHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHH
Q 003082 231 FGKKRDLVSALRAYDASKKHLSS-PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTL 309 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~ 309 (850)
|.+.|++++|+..|+++.+..+. .+..++..+...|...|++++|+..|+++.+..
T Consensus 187 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------------------- 243 (365)
T 4eqf_A 187 PVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR----------------------- 243 (365)
T ss_dssp --CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------------
T ss_pred HhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------------
Confidence 88888888888888888775432 157778888888888888888888888776531
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003082 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389 (850)
Q Consensus 310 ~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m 389 (850)
+.+..+|+.+...|.+.|++++|...|+++.+. .+.+..+|..+...|...|++++|...|+++
T Consensus 244 -----------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 307 (365)
T 4eqf_A 244 -----------PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI-----QPGFIRSRYNLGISCINLGAYREAVSNFLTA 307 (365)
T ss_dssp -----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred -----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 123444455555555555555555555554442 1122444555555555555555555555554
Q ss_pred HHCCCC-----------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003082 390 LSAGVT-----------PNTITWSSLINACANAGLVEQAMHLFE 422 (850)
Q Consensus 390 ~~~g~~-----------p~~~ty~~li~~~~~~g~~~~A~~l~~ 422 (850)
.+.... .+...|..+..++...|+.+.+..+..
T Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 308 LSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 432110 023455666666666666665555543
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.64 E-value=6.3e-15 Score=156.62 Aligned_cols=351 Identities=11% Similarity=0.078 Sum_probs=149.5
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 003082 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDA 246 (850)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~ 246 (850)
+.|+.++|.++++++- .+..|+.+++++.+.|++++|++.|...+ +...|..++..+...|++++|+..++.
T Consensus 15 ~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika~-D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKAD-DPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcCC-CHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3477888888888762 22468888888888888888888887654 345777888888888888888887776
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHH
Q 003082 247 SKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMAS 326 (850)
Q Consensus 247 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t 326 (850)
..+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~----------------------------------------~pn~~a 124 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN----------------------------------------GPNNAH 124 (449)
T ss_dssp ------------------------CHHHHTTTTT----------------------------------------CC----
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc----------------------------------------CCcHHH
Confidence 6653 3556778888888888888888776663 255568
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003082 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406 (850)
Q Consensus 327 ~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~ 406 (850)
|+.+...|...|++++|...|..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.
T Consensus 125 ~~~IGd~~~~~g~yeeA~~~Y~~a-------------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~ 185 (449)
T 1b89_A 125 IQQVGDRCYDEKMYDAAKLLYNNV-------------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF 185 (449)
T ss_dssp ------------CTTTHHHHHHHT-------------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-------------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHH
Confidence 888888888888888888888753 25888888888888888888888887 27888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhh
Q 003082 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKD 486 (850)
Q Consensus 407 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (850)
+|+..|+++.|...... +..++.-...++..|.+.|++++|..+++......
T Consensus 186 aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le----------------------- 237 (449)
T 1b89_A 186 ACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE----------------------- 237 (449)
T ss_dssp HHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-----------------------
T ss_pred HHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-----------------------
Confidence 88888888888554443 22344445567888888888888888888765322
Q ss_pred cccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhc-cHHHHHHHHHHHHH-cCCCC------CHHHHHHHHHHH
Q 003082 487 KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT-DYYRVKALMNEMRT-VGLSP------NHISWTILIDAC 558 (850)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~-~~~~a~~l~~~m~~-~g~~p------~~~ty~~li~~~ 558 (850)
+-....|+-+--.|++ ..++..+-++.... .+++| +...|.-+...|
T Consensus 238 -------------------------~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly 292 (449)
T 1b89_A 238 -------------------------RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLY 292 (449)
T ss_dssp -------------------------TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 2334555556556664 33333332222211 12222 455788899999
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003082 559 GGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQ 638 (850)
Q Consensus 559 ~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~~~g~~~~a~ 638 (850)
.+.++++.|.. .|.+. .|+..--..+.+...+..+.+--.+...--.+ -.|.. ++-|+.++...=+..+
T Consensus 293 ~~~~e~d~A~~---tm~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~--~~p~~--l~~ll~~l~~~ld~~r-- 361 (449)
T 1b89_A 293 DKYEEYDNAII---TMMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLE--FKPLL--LNDLLMVLSPRLDHTR-- 361 (449)
T ss_dssp HHTTCHHHHHH---HHHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH--HCGGG--HHHHHHHHGGGCCHHH--
T ss_pred HhhchHHHHHH---HHHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHh--cCHHH--HHHHHHHHHhccCcHH--
Confidence 99999998876 35553 34444444445555566665544333333332 23443 5666666654434333
Q ss_pred HHHHHHHHHHHcCCCC
Q 003082 639 QCLAVYQDMWKAGYKA 654 (850)
Q Consensus 639 ~a~~l~~~M~~~g~~p 654 (850)
+ .+.+.+.|.-|
T Consensus 362 -~---v~~~~~~~~l~ 373 (449)
T 1b89_A 362 -A---VNYFSKVKQLP 373 (449)
T ss_dssp -H---HHHHHHTTCTT
T ss_pred -H---HHHHHHcCCcH
Confidence 2 33445556555
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.64 E-value=5.7e-14 Score=151.90 Aligned_cols=96 Identities=9% Similarity=-0.090 Sum_probs=77.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhh
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~ 301 (850)
..+..++..|.+.|++++|+..|+++.+.. +.+..+|..+..+|.+.|++++|+..|+.+.+..
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------------- 128 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK--------------- 128 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC---------------
Confidence 567788999999999999999999998864 2467788899999999999999999988876431
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003082 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (850)
Q Consensus 302 ~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~ 352 (850)
+.+..++..+...|...|++++|.+.|+.+..
T Consensus 129 -------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (368)
T 1fch_A 129 -------------------PDNQTALMALAVSFTNESLQRQACEILRDWLR 160 (368)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23566777788888888888888888888776
No 28
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.64 E-value=1.7e-11 Score=138.15 Aligned_cols=351 Identities=11% Similarity=0.020 Sum_probs=282.2
Q ss_pred CCcchHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCcC
Q 003082 219 RADILFCNFVREFGK----KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI----CGDYMKSRAIYEDLRSQNVTLN 290 (850)
Q Consensus 219 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd 290 (850)
.+..++..|...|.. .+++++|+..|+...+.| +...+..|...|.. .+++++|...|++..+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 344677788888888 899999999999998864 57788889999998 899999999999998876 3
Q ss_pred HHHHHHHHHh--h----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhhhcCCcc
Q 003082 291 IYVFNSLMNV--N----AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL----AGNTVLAQEIYGEVKHLEAKGVLK 360 (850)
Q Consensus 291 ~~t~~~ll~~--~----~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~----~g~~~~A~~i~~~m~~~~~~g~~~ 360 (850)
...+..|-.. . .++.++|++.|++..+.| +...+..|...|.. .++.++|.+.|+...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~------- 180 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ------- 180 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------
Confidence 3333333322 2 458999999999998876 67788888888887 78999999999998762
Q ss_pred cCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCC
Q 003082 361 LDVFTYSTIVKVFAD----AKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN----AGLVEQAMHLFEEMLQAGCEPN 432 (850)
Q Consensus 361 ~d~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~ 432 (850)
.+...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|..+|++..+.| +
T Consensus 181 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 254 (490)
T 2xm6_A 181 GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---N 254 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---C
T ss_pred CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 367788888888888 899999999999998875 67788888888886 789999999999998765 5
Q ss_pred HHHHHHHHHHHHH----hCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccc
Q 003082 433 SQCCNILLQACVE----ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR 508 (850)
Q Consensus 433 ~~~~~~ll~~~~~----~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (850)
...+..+-..|.. .++.++|.+.|+...+.+
T Consensus 255 ~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~--------------------------------------------- 289 (490)
T 2xm6_A 255 SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG--------------------------------------------- 289 (490)
T ss_dssp HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---------------------------------------------
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---------------------------------------------
Confidence 5677777777877 899999999999876432
Q ss_pred cCCCcCHHHHHHHHHHH--h-----ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHCC
Q 003082 509 FSFKPTTTTYNILMKAC--C-----TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSG---NVEGALQILKIMREDG 578 (850)
Q Consensus 509 ~~~~p~~~t~~~li~~~--~-----~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g---~~~~A~~l~~~m~~~g 578 (850)
+...+..+-..| . ++.++|...|+...+.| +...+..|...|.+.| +.++|..+|++..+.|
T Consensus 290 -----~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~ 361 (490)
T 2xm6_A 290 -----NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG 361 (490)
T ss_dssp -----CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT
T ss_pred -----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC
Confidence 222333333333 2 47899999999998864 4567777888888767 8899999999999864
Q ss_pred CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHHHHc
Q 003082 579 MSPDVVAYTTAIKVCVR----SKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSR----YGSLHEVQQCLAVYQDMWKA 650 (850)
Q Consensus 579 ~~pd~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~~----~g~~~~a~~a~~l~~~M~~~ 650 (850)
+...+..+...|.. .++.++|.++|++..+.| +...+..|-..|.+ .++.++ |...|++..+.
T Consensus 362 ---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~---A~~~~~~A~~~ 432 (490)
T 2xm6_A 362 ---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQ---AWAWFDTASTN 432 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH---HHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHH---HHHHHHHHHHC
Confidence 68889999999998 899999999999999875 56777788888877 677666 77788888877
Q ss_pred CCC
Q 003082 651 GYK 653 (850)
Q Consensus 651 g~~ 653 (850)
|..
T Consensus 433 ~~~ 435 (490)
T 2xm6_A 433 DMN 435 (490)
T ss_dssp HCC
T ss_pred CCC
Confidence 644
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.63 E-value=4.2e-14 Score=152.94 Aligned_cols=256 Identities=12% Similarity=-0.002 Sum_probs=188.6
Q ss_pred HHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003082 194 EFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC 269 (850)
Q Consensus 194 ~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 269 (850)
+..++..+.+.|++++|+.+|+.+ |.+..++..++..|.+.|++++|+..|+++.+.. +.+..+|..+..+|...
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 146 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNT 146 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHcc
Confidence 344444444444444444444332 4445677778888888888888888888887753 23567788888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCcCHH-----------HHHHHHHh--hcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHH
Q 003082 270 GDYMKSRAIYEDLRSQNVTLNIY-----------VFNSLMNV--NAHDLKFTLEVYKNMQKLGVM-ADMASYNILLKACC 335 (850)
Q Consensus 270 g~~~~A~~~~~~m~~~g~~pd~~-----------t~~~ll~~--~~~~~~~a~~l~~~m~~~g~~-pd~~t~~~Ll~~~~ 335 (850)
|++++|+..|+++.+.. |+.. .+..+... ..|++++|++.|+++.+.... .+..++..+...|.
T Consensus 147 g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 147 SHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp TCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 88888888888877642 2211 11111222 345788888888888776422 26889999999999
Q ss_pred HcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 003082 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415 (850)
Q Consensus 336 ~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 415 (850)
..|++++|.+.|+++.+. .+.+..+|..+...|...|++++|...|+++.+.... +..+|..+...|.+.|+++
T Consensus 225 ~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTV-----RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCH
T ss_pred HCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHH
Confidence 999999999999999874 2446789999999999999999999999999886433 5889999999999999999
Q ss_pred HHHHHHHHHHHcCC-----------CCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003082 416 QAMHLFEEMLQAGC-----------EPNSQCCNILLQACVEACQFDRAFRLFRS 458 (850)
Q Consensus 416 ~A~~l~~~m~~~g~-----------~p~~~~~~~ll~~~~~~g~~~~A~~l~~~ 458 (850)
+|...|+++.+... ..+...|..+..++...|+.+.+....+.
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999987421 11357889999999999999999887754
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.62 E-value=1.3e-13 Score=146.08 Aligned_cols=262 Identities=8% Similarity=-0.074 Sum_probs=195.5
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCC
Q 003082 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRD 236 (850)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~ 236 (850)
.+...+..+...|++++|+..++++++.. |+ +..++..++..|...|+
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~------------------------------~~~~~~~l~~~~~~~~~ 70 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA--PE------------------------------REEAWRSLGLTQAENEK 70 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT------------------------------CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC--CC------------------------------CHHHHHHHHHHHHHcCC
Confidence 34455556666777777777777666543 33 33556666777777777
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHH-----------------HH
Q 003082 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL-----------------MN 299 (850)
Q Consensus 237 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l-----------------l~ 299 (850)
+++|...|+++.+.. +.+..++..+...|...|++++|...|+.+.+.... +...+..+ +.
T Consensus 71 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (327)
T 3cv0_A 71 DGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFF 148 (327)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCT
T ss_pred HHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHH
Confidence 777777777777643 235667777777777778888888777777765211 11111111 12
Q ss_pred hhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCH
Q 003082 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379 (850)
Q Consensus 300 ~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~ 379 (850)
...+++++|.+.++++.+.. +.+...+..+...|.+.|++++|.+.|+++.+. .+.+..+|..+...|...|++
T Consensus 149 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~ 222 (327)
T 3cv0_A 149 AAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL-----RPDDAQLWNKLGATLANGNRP 222 (327)
T ss_dssp TSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcCCH
Confidence 23357888999999988765 447889999999999999999999999998874 234577899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHHhCC
Q 003082 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP-----------NSQCCNILLQACVEACQ 448 (850)
Q Consensus 380 ~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----------~~~~~~~ll~~~~~~g~ 448 (850)
++|...|+++.+... .+..+|..+...+.+.|++++|...|+++.+..... +...+..+..+|.+.|+
T Consensus 223 ~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (327)
T 3cv0_A 223 QEALDAYNRALDINP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR 301 (327)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCC
Confidence 999999999987643 368899999999999999999999999998753221 46788999999999999
Q ss_pred HHHHHHHHHHH
Q 003082 449 FDRAFRLFRSW 459 (850)
Q Consensus 449 ~~~A~~l~~~m 459 (850)
+++|..+++..
T Consensus 302 ~~~A~~~~~~~ 312 (327)
T 3cv0_A 302 PDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.62 E-value=2e-13 Score=153.27 Aligned_cols=366 Identities=11% Similarity=-0.028 Sum_probs=240.3
Q ss_pred hhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcC--ChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcC---C
Q 003082 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEG--NVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG---V 144 (850)
Q Consensus 70 ~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~---~ 144 (850)
....|+.|+..+...|++++|+..|+++++... .+.. ........+.+....|...|++++|+..|+++.+.. .
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~-~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQ-AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGG-CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccc-cchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 478899999999999999999999999887521 1110 011123345556667779999999999999987541 1
Q ss_pred CCccccchhhhHHHHHHHHhh--hhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHH---HcCCChHHHHHHhhh---
Q 003082 145 APLELFDGSGFKLLKNECQRL--LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC---VNKPDVNLAIRYACI--- 216 (850)
Q Consensus 145 ~p~~~~~~~~~~~l~~~~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~A~~~~~~--- 216 (850)
.+..... ..++...+..+ ...+++++|+..|++.++.. |+.+..+..++.++ ...++.++|+..++.
T Consensus 129 ~~~~~~~---~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~ 203 (472)
T 4g1t_A 129 SPYRIES---PELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR 203 (472)
T ss_dssp CSSCCCC---HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH
T ss_pred cccchhh---HHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 1111111 23333333222 33568999999999998865 88777777666654 346777777776654
Q ss_pred -CCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC-
Q 003082 217 -VPRADILFCNFVREFGK----KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN- 290 (850)
Q Consensus 217 -~p~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd- 290 (850)
-|.+..++..+...+.. .|++++|.+.|++..... +.+..++..+...|...|++++|...|++..+. .|+
T Consensus 204 l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~ 280 (472)
T 4g1t_A 204 LNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNN 280 (472)
T ss_dssp HCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTC
T ss_pred cCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCh
Confidence 37777777777666554 467889999999988753 356788999999999999999999999998876 343
Q ss_pred HHHHHHHHHhhc---------------------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003082 291 IYVFNSLMNVNA---------------------HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGE 349 (850)
Q Consensus 291 ~~t~~~ll~~~~---------------------~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~ 349 (850)
..++..+-.++. +..+.|...|+...+.. +.+..++..+...|...|++++|.+.|++
T Consensus 281 ~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~k 359 (472)
T 4g1t_A 281 AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQK 359 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHH
Confidence 344443322211 13456777787777654 34567788899999999999999999998
Q ss_pred HHHhhhcCCcccCHh----HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003082 350 VKHLEAKGVLKLDVF----TYSTIVK-VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424 (850)
Q Consensus 350 m~~~~~~g~~~~d~~----ty~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m 424 (850)
..+ ..++.. .+..+.. .+...|++++|+..|.+.++. .|+...... ..+.+.++++..
T Consensus 360 aL~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~ 422 (472)
T 4g1t_A 360 EFS------KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKMR 422 (472)
T ss_dssp HHH------SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHH
T ss_pred HHh------cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHHH
Confidence 876 233322 2223322 245779999999999998875 444332222 234445566666
Q ss_pred HHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Q 003082 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (850)
Q Consensus 425 ~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~ 463 (850)
.+.. +.+..+|..+...|...|++++|.+.|++..+.+
T Consensus 423 l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 423 LSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 5553 5567889999999999999999999999887654
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.61 E-value=1.5e-13 Score=143.07 Aligned_cols=254 Identities=9% Similarity=-0.025 Sum_probs=148.3
Q ss_pred HHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHH
Q 003082 79 SKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLL 158 (850)
Q Consensus 79 ~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l 158 (850)
....-.|.|+.|+..++..... .|... .......+.+|+..|++++|+..++. ..|. ...++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~-----~e~~~~l~r~yi~~g~~~~al~~~~~-----~~~~------~~~a~ 68 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERD-----VERDVFLYRAYLAQRKYGVVLDEIKP-----SSAP------ELQAV 68 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHH-----HHHHHHHHHHHHHTTCHHHHHHHSCT-----TSCH------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccC--Cchhh-----HHHHHHHHHHHHHCCCHHHHHHHhcc-----cCCh------hHHHH
Confidence 3455678999999988876554 44421 11111234567788999988876543 1221 13444
Q ss_pred HHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChH
Q 003082 159 KNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLV 238 (850)
Q Consensus 159 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~ 238 (850)
..+...+...|+.++|++.+++++..+..|++...+..++..+...|++++|++.++. |.+..++..++..|.+.|+++
T Consensus 69 ~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-~~~~~~~~~l~~~~~~~g~~~ 147 (291)
T 3mkr_A 69 RMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-GDSLECMAMTVQILLKLDRLD 147 (291)
T ss_dssp HHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-CCSHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH
Confidence 4455666678889999999998887655566665566666666666666666666655 555555555666666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHH
Q 003082 239 SALRAYDASKKHLSSPNMYI---CRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNM 315 (850)
Q Consensus 239 ~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m 315 (850)
+|.+.|+.+.+.. |+... ....+..+...|++++|..+|+++.
T Consensus 148 ~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l-------------------------------- 193 (291)
T 3mkr_A 148 LARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMA-------------------------------- 193 (291)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH--------------------------------
T ss_pred HHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHH--------------------------------
Confidence 6666666665542 22111 1112222223344555554444444
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHH-HHHHHHHHHHC
Q 003082 316 QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM-ALKVKEDMLSA 392 (850)
Q Consensus 316 ~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~-A~~l~~~m~~~ 392 (850)
+. .+.+...++.+..++.+.|++++|...|++.... -+-+..++..++..+...|+.++ +.++++++.+.
T Consensus 194 -~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~-----~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 194 -DK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK-----DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp -HH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred -Hh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 32 2445666666777777777777777777766652 12345566666666666666654 45666666654
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.60 E-value=1.6e-13 Score=145.42 Aligned_cols=279 Identities=9% Similarity=-0.017 Sum_probs=189.3
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+..++..+...|++++|+.+|+++++. .|..... +......+...|++++|+..|+++.+. .|+.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~------~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-- 88 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQA--APEREEA------WRSLGLTQAENEKDGLAIIALNHARML--DPKD-- 88 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH------HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC--
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHH------HHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCC--
Confidence 566778899999999999999999999988 4443222 222334566899999999999999954 5554
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHH-HH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNF-VR 229 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~l-i~ 229 (850)
..++...+..+...|++++|+..++++.... |.....+..+...+ +.. .....+ ..
T Consensus 89 ----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~----------------~~~-~~~~~~~~~ 145 (327)
T 3cv0_A 89 ----IAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQAD----------------VDI-DDLNVQSED 145 (327)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC-------------------------------------
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHH----------------HHH-HHHHHHHHh
Confidence 4556666777888999999999999998765 44433333221111 000 111123 22
Q ss_pred -HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHH
Q 003082 230 -EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT 308 (850)
Q Consensus 230 -~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a 308 (850)
.+...|++++|+..|+++.+... .+..++..+...|...|++++|...|+++.+..
T Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---------------------- 202 (327)
T 3cv0_A 146 FFFAAPNEYRECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR---------------------- 202 (327)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------
T ss_pred HHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----------------------
Confidence 36777889999999998887542 467888888899999999999999998876531
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 003082 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (850)
Q Consensus 309 ~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~ 388 (850)
+.+..++..+...+...|++++|...|+.+.+. .+.+..+|..+...|...|++++|...|++
T Consensus 203 ------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 265 (327)
T 3cv0_A 203 ------------PDDAQLWNKLGATLANGNRPQEALDAYNRALDI-----NPGYVRVMYNMAVSYSNMSQYDLAAKQLVR 265 (327)
T ss_dssp ------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 224556666677777777777777777776653 123456677777777777777777777777
Q ss_pred HHHCCCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003082 389 MLSAGVTP-----------NTITWSSLINACANAGLVEQAMHLFEEM 424 (850)
Q Consensus 389 m~~~g~~p-----------~~~ty~~li~~~~~~g~~~~A~~l~~~m 424 (850)
..+..... +..+|..+..++.+.|+.++|..++++.
T Consensus 266 a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 266 AIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 66543221 3566777777777777777777776543
No 34
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.56 E-value=6.1e-15 Score=156.72 Aligned_cols=279 Identities=12% Similarity=0.106 Sum_probs=120.3
Q ss_pred cCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003082 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (850)
Q Consensus 203 ~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 282 (850)
+.|+.++|..+++..+.+ .+|..|+.++.+.|++++|++.|... +|..+|..++.++...|++++|+..++..
T Consensus 15 ~~~~ld~A~~fae~~~~~-~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP-AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 345566666666666443 36666666666666666666666432 34456666666666666666666644433
Q ss_pred HhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccC
Q 003082 283 RSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362 (850)
Q Consensus 283 ~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d 362 (850)
+ +. .+++.+.+.|+.+|.+.|+++++.++++ .|+
T Consensus 88 r---------------------------------k~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-----------~pn 121 (449)
T 1b89_A 88 R---------------------------------KK--ARESYVETELIFALAKTNRLAELEEFIN-----------GPN 121 (449)
T ss_dssp --------------------------------------------------------CHHHHTTTTT-----------CC-
T ss_pred H---------------------------------Hh--CccchhHHHHHHHHHHhCCHHHHHHHHc-----------CCc
Confidence 3 21 3457788899999999999999888773 367
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003082 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (850)
Q Consensus 363 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~ 442 (850)
..+|+.+...|...|++++|...|..+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+
T Consensus 122 ~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~a 186 (449)
T 1b89_A 122 NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFA 186 (449)
T ss_dssp ---------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHH
Confidence 779999999999999999999999977 36999999999999999999999988 278999999999
Q ss_pred HHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHH
Q 003082 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM 522 (850)
Q Consensus 443 ~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li 522 (850)
|+..|+++.|......+.
T Consensus 187 Cv~~~ef~lA~~~~l~L~-------------------------------------------------------------- 204 (449)
T 1b89_A 187 CVDGKEFRLAQMCGLHIV-------------------------------------------------------------- 204 (449)
T ss_dssp HHHTTCHHHHHHTTTTTT--------------------------------------------------------------
T ss_pred HHHcCcHHHHHHHHHHHH--------------------------------------------------------------
Confidence 999999999944321110
Q ss_pred HHHhccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--CCHH
Q 003082 523 KACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRS--KRLK 600 (850)
Q Consensus 523 ~~~~~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~--g~~~ 600 (850)
.++.-...++..|.+.|++++|..+++...... .-....|+.+.-+|++- +++.
T Consensus 205 -----------------------~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ 260 (449)
T 1b89_A 205 -----------------------VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMR 260 (449)
T ss_dssp -----------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHH
T ss_pred -----------------------hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHH
Confidence 111112347777888888888888888877544 44567777777777764 3455
Q ss_pred HHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCChHHH
Q 003082 601 QAFSLFEEMKHYQIQP------NLVTYITLLRARSRYGSLHEV 637 (850)
Q Consensus 601 ~A~~l~~~m~~~g~~p------~~~t~~~li~a~~~~g~~~~a 637 (850)
+.+++|..- -.+.| +...|.-+.-.|...+.++.|
T Consensus 261 ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A 301 (449)
T 1b89_A 261 EHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 301 (449)
T ss_dssp HHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 555555421 12322 344566666667777776664
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.56 E-value=6.1e-12 Score=141.07 Aligned_cols=328 Identities=11% Similarity=-0.017 Sum_probs=150.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhC-----C-CC-CCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCcCH-
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKH-----L-SS-PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNI- 291 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~-p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~pd~- 291 (850)
.+|.+++..|...|++++|...|+...+. + .. ....++..+..++.+. +++++|+..|++..+. .|+.
T Consensus 95 ~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~ 172 (472)
T 4g1t_A 95 VTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNP 172 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCH
Confidence 34555555555555555555555544321 0 00 1233444444444333 2455666666555543 2221
Q ss_pred HHHHHHHHh-----hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhhhcCCcccC
Q 003082 292 YVFNSLMNV-----NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL----AGNTVLAQEIYGEVKHLEAKGVLKLD 362 (850)
Q Consensus 292 ~t~~~ll~~-----~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~----~g~~~~A~~i~~~m~~~~~~g~~~~d 362 (850)
..+..+..+ ..++.++|++.|++..+.. +.+...+..+...+.. .|++++|.+.+++.... .+.+
T Consensus 173 ~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~-----~~~~ 246 (472)
T 4g1t_A 173 EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK-----APGV 246 (472)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-----CSSC
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-----CccH
Confidence 112111111 1234444555555554432 2234444444333332 23455566666555442 1233
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------------------cCCHHHHHHHHHH
Q 003082 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN-------------------AGLVEQAMHLFEE 423 (850)
Q Consensus 363 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~-------------------~g~~~~A~~l~~~ 423 (850)
...+..+...|...|++++|...+++..+.... +..++..+...|.. .+..++|...|+.
T Consensus 247 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 325 (472)
T 4g1t_A 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKK 325 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 445555666666666666666666665554322 34444444443322 1235667777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCccc
Q 003082 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYS 503 (850)
Q Consensus 424 m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (850)
..+.. +.+..++..+...|.+.|++++|.+.|++.....
T Consensus 326 a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~---------------------------------------- 364 (472)
T 4g1t_A 326 ADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKE---------------------------------------- 364 (472)
T ss_dssp HHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC----------------------------------------
T ss_pred HhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC----------------------------------------
Confidence 66653 3344566777778888888888888887765432
Q ss_pred ccccccCCCcCHHH----HHH---HHHHHhccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003082 504 SFDKRFSFKPTTTT----YNI---LMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRE 576 (850)
Q Consensus 504 ~~~~~~~~~p~~~t----~~~---li~~~~~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 576 (850)
|+... +.. +.....++.++|...|.+..+ +.|+....... ...+.++++...+
T Consensus 365 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~---------~~~l~~~~~~~l~ 424 (472)
T 4g1t_A 365 ---------LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEKM---------KDKLQKIAKMRLS 424 (472)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHHH---------HHHHHHHHHHHHH
T ss_pred ---------CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHH---------HHHHHHHHHHHHH
Confidence 11111 111 111112456777777777666 34443322211 2334445555444
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHH
Q 003082 577 DGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQ-IQPNLVT 620 (850)
Q Consensus 577 ~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t 620 (850)
.. +.+..+|+.+...|...|+.++|++.|++..+.| ..|+..+
T Consensus 425 ~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 425 KN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp HC-C-CTTHHHHHHHHHHHHHHCC---------------------
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 32 3456677778888888888888888888777633 2344433
No 36
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.55 E-value=1.1e-12 Score=136.42 Aligned_cols=269 Identities=9% Similarity=0.043 Sum_probs=190.6
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCCC-cccHHHHHHHHHcCCChHHHHHHhhhC-CCCcchHHHHHHHHHhcCChHHHHHHH
Q 003082 167 DSGEVEMFVGLMEVLEEFRLPVKE-LDEEFRIVQLCVNKPDVNLAIRYACIV-PRADILFCNFVREFGKKRDLVSALRAY 244 (850)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~-p~~~~~~~~li~~~~~~g~~~~A~~~~ 244 (850)
..|++.+|+..++.+... .|++ ......++++|...|+++.|+..++.. |+...++..++..+...++.++|++.+
T Consensus 11 ~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l 88 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAEL 88 (291)
T ss_dssp HTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 579999999988865432 2443 234466788999999999999877654 222256667888899999999999999
Q ss_pred HHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh--hcCChHHHHHHHHHHHHcCCC
Q 003082 245 DASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVM 321 (850)
Q Consensus 245 ~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~--~~~~~~~a~~l~~~m~~~g~~ 321 (850)
+++...+..| +...+..+..+|...|++++|++.|+. ..+...+..+... ..|+.++|.+.|+++.+..
T Consensus 89 ~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-- 160 (291)
T 3mkr_A 89 DREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD-- 160 (291)
T ss_dssp HHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--
Confidence 9988766445 566777778889999999999999886 3445555555554 4578888888888887764
Q ss_pred CCHHHH---HHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003082 322 ADMASY---NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398 (850)
Q Consensus 322 pd~~t~---~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 398 (850)
|+.... ..++..+...|++++|..+|+++.+. .+.+...|+.+..++.+.|++++|...|++.++.... +.
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~ 234 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-----CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HP 234 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CH
Confidence 443211 22334444458888888888888763 3456778888888888888888888888888776433 67
Q ss_pred HHHHHHHHHHHHcCCHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 003082 399 ITWSSLINACANAGLVEQ-AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456 (850)
Q Consensus 399 ~ty~~li~~~~~~g~~~~-A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~ 456 (850)
.++..++..+...|+.++ +..+++++.+. .|+... +.+...+.+.++++..-|
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~---~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPF---IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChH---HHHHHHHHHHHHHHHHHc
Confidence 788888888888888765 56788888765 344322 233445555555554433
No 37
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.48 E-value=1.7e-12 Score=139.74 Aligned_cols=201 Identities=10% Similarity=-0.008 Sum_probs=137.7
Q ss_pred ccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCc-hhHHHHHHHHHH
Q 003082 62 TVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGR-IDCVVGVLKKLN 140 (850)
Q Consensus 62 ~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~l~~~~ 140 (850)
++..+|+. ..+|..++..+...|++++|+..|+++++. +|..+..+.. + ...+...|+ +++|+..|++++
T Consensus 89 ai~~~p~~-~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~---~---g~~l~~~g~d~~eAl~~~~~al 159 (382)
T 2h6f_A 89 QIIYSDKF-RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHF---R---RVLLKSLQKDLHEEMNYITAII 159 (382)
T ss_dssp EECCCHHH-HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHH---H---HHHHHHTTCCHHHHHHHHHHHH
T ss_pred hhhCChhh-HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHH---H---HHHHHHcccCHHHHHHHHHHHH
Confidence 44556665 788888999999999999999999999988 6665444222 2 223447786 999999999999
Q ss_pred HcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC---
Q 003082 141 ELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV--- 217 (850)
Q Consensus 141 ~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--- 217 (850)
+ +.|+. ..++.+.+..+...|++++|+..|++++... |++...|+.++.++...|++++|+.+++.+
T Consensus 160 ~--l~P~~------~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld--P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l 229 (382)
T 2h6f_A 160 E--EQPKN------YQVWHHRRVLVEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 229 (382)
T ss_dssp H--HCTTC------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred H--HCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 4 46765 5667777777778899999999999988765 777766777777666666666666665543
Q ss_pred -CCCcchHHHHHHHHHh-cCChHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHH
Q 003082 218 -PRADILFCNFVREFGK-KRDLVSA-----LRAYDASKKHLSSPNMYICRTIIDVCGICG--DYMKSRAIYEDL 282 (850)
Q Consensus 218 -p~~~~~~~~li~~~~~-~g~~~~A-----~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m 282 (850)
|.+..+|+.+..+|.+ .|..++| +..|+..+...+ -+...|+.+..++.+.| ++++|++.+.++
T Consensus 230 ~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 230 DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 5555666666666666 4444555 355666655321 24556666666666655 456666555554
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.44 E-value=2.6e-12 Score=127.41 Aligned_cols=194 Identities=9% Similarity=-0.007 Sum_probs=138.5
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+..++..+...|++++|+..|+++++. +|....... .....+...|++++|+..|+++.+ +.|+.
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~------~lg~~~~~~g~~~~A~~~~~~al~--~~P~~-- 72 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALY------WLARTQLKLGLVNPALENGKTLVA--RTPRY-- 72 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHH------HHHHHHHHTTCHHHHHHHHHHHHH--HCTTC--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHH------HHHHHHHHcCCHHHHHHHHHHHHH--hCCCc--
Confidence 678889999999999999999999999988 555433322 223345689999999999999995 46765
Q ss_pred chhhhHHHHHHHHhhhhc-----------CcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC--
Q 003082 151 DGSGFKLLKNECQRLLDS-----------GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV-- 217 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-- 217 (850)
...+..++..+... |++++|+..+++.++.. |+....+..++.++...|++++|+..|+.+
T Consensus 73 ----~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 146 (217)
T 2pl2_A 73 ----LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALA 146 (217)
T ss_dssp ----HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 45566666777778 99999999999998865 777777888888888888888888777552
Q ss_pred -CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003082 218 -PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (850)
Q Consensus 218 -p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (850)
..+..++..++..|...|++++|+..|+...+..+ .+...+..+..++...|++++|+..|++..
T Consensus 147 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 147 LEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC---------------
T ss_pred cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 24456677788888888888888888888777532 356677777888888888888888777643
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.43 E-value=1.9e-11 Score=121.06 Aligned_cols=201 Identities=11% Similarity=-0.032 Sum_probs=145.6
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHH
Q 003082 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296 (850)
Q Consensus 217 ~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 296 (850)
+|++...+..++..+.+.|++++|+..|++.++..+ .+...+..+..++.+.|++++|+..|++..+.. |+
T Consensus 1 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~------ 71 (217)
T 2pl2_A 1 MQTAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART--PR------ 71 (217)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT------
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC------
Confidence 356667788888899999999999999998887532 467788888888999999999999888877542 22
Q ss_pred HHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHHhhhcCCcccCHhH
Q 003082 297 LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA-----------GNTVLAQEIYGEVKHLEAKGVLKLDVFT 365 (850)
Q Consensus 297 ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~-----------g~~~~A~~i~~~m~~~~~~g~~~~d~~t 365 (850)
+...+..+...+... |++++|...|++..+. -+-+...
T Consensus 72 --------------------------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~P~~~~~ 120 (217)
T 2pl2_A 72 --------------------------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV-----NPRYAPL 120 (217)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred --------------------------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-----CcccHHH
Confidence 233344444444444 8999999999988873 1234677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003082 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (850)
Q Consensus 366 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~ 445 (850)
|..+...|...|++++|+..|++..+.. .+...+..+...|...|++++|...|++..+.. +.+...+..+...+.+
T Consensus 121 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~ 197 (217)
T 2pl2_A 121 HLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLL 197 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 8888888999999999999999998877 588889999999999999999999999998864 4466778888888999
Q ss_pred hCCHHHHHHHHHHHh
Q 003082 446 ACQFDRAFRLFRSWT 460 (850)
Q Consensus 446 ~g~~~~A~~l~~~m~ 460 (850)
.|++++|...|++..
T Consensus 198 ~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 198 KGKAEEAARAAALEH 212 (217)
T ss_dssp ---------------
T ss_pred ccCHHHHHHHHHHHh
Confidence 999999998887653
No 40
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.42 E-value=1.1e-11 Score=125.75 Aligned_cols=204 Identities=13% Similarity=-0.014 Sum_probs=154.2
Q ss_pred cCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCC
Q 003082 65 RDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGV 144 (850)
Q Consensus 65 ~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~ 144 (850)
.+|......+..++..+...|++++|+..|+++++. .|.... .+......+...|++++|++.|+++.+.
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~------~~~~la~~~~~~~~~~~A~~~~~~a~~~-- 100 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPSSAD------AHAALAVVFQTEMEPKLADEEYRKALAS-- 100 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTTCHH------HHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCChHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHH--
Confidence 345545788999999999999999999999999988 343221 2223334566899999999999999954
Q ss_pred CCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh----CCCC
Q 003082 145 APLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRA 220 (850)
Q Consensus 145 ~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~p~~ 220 (850)
.|+. ..++...+..+...|++++|++.++++...+..|.....+..++..+...|++++|+.+++. .|.+
T Consensus 101 ~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 174 (252)
T 2ho1_A 101 DSRN------ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ 174 (252)
T ss_dssp CTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred CcCc------HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc
Confidence 4543 44556666777889999999999999887333465666677788888888888888887765 3556
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 221 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
..++..++..|...|++++|...|+.+.+... .+...+..+...+...|++++|.+.++.+.+.
T Consensus 175 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 175 PSVALEMADLLYKEREYVPARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 67777788888888888888888888776432 45667777778888888888888888887765
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.40 E-value=1e-10 Score=118.81 Aligned_cols=225 Identities=11% Similarity=0.036 Sum_probs=152.3
Q ss_pred HHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcC
Q 003082 156 KLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKR 235 (850)
Q Consensus 156 ~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g 235 (850)
+.+...+..+...|++++|+..+++.++.. +.. .++..++..|...|
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~------------------------------~~~~~~~~~~~~~~ 52 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDI------------------------------TYLNNRAAAEYEKG 52 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCT------------------------------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccH------------------------------HHHHHHHHHHHHcc
Confidence 344555566667788888888888776654 222 45556666666677
Q ss_pred ChHHHHHHHHHHHhCCCC--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHH
Q 003082 236 DLVSALRAYDASKKHLSS--PN----MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTL 309 (850)
Q Consensus 236 ~~~~A~~~~~~m~~~g~~--p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~ 309 (850)
++++|+..|+...+.... ++ ..+|..+...|...|++++|+..|+...+. .|+...+ ...+++++|.
T Consensus 53 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~-----~~~~~~~~a~ 125 (258)
T 3uq3_A 53 EYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTADIL-----TKLRNAEKEL 125 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHH-----HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CchhHHH-----HHHhHHHHHH
Confidence 777777777666553211 11 466777777777777777777777777664 2332221 1224566677
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003082 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389 (850)
Q Consensus 310 ~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m 389 (850)
+.++.+.... +.+...+..+...+...|++++|...|+++.+. .+.+..+|..+...|...|++++|...|++.
T Consensus 126 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 126 KKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR-----APEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 7777666543 234566777888888888888888888887763 2345677888888888888888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003082 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (850)
Q Consensus 390 ~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 427 (850)
.+... .+..+|..+...+.+.|++++|...|++..+.
T Consensus 200 l~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 200 IEKDP-NFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 77543 25777888888888888888888888887764
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.39 E-value=6e-11 Score=120.58 Aligned_cols=224 Identities=13% Similarity=0.030 Sum_probs=187.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CcC----HHHHH
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV--TLN----IYVFN 295 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~pd----~~t~~ 295 (850)
..+..++..+...|++++|+..|+++.+.. .+..+|..+..+|...|++++|+..|+...+... .++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 567789999999999999999999999876 7788999999999999999999999999876421 122 34555
Q ss_pred HHHHh--hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHH
Q 003082 296 SLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373 (850)
Q Consensus 296 ~ll~~--~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~ 373 (850)
.+-.+ ..+++++|.+.|++..+.. |+. ..+.+.|++++|...++.+... .+.+...|..+...+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~ 149 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYV-----NPEKAEEARLEGKEY 149 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHc-----CcchHHHHHHHHHHH
Confidence 55444 4579999999999998853 443 3566778999999999998862 233466788899999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHH
Q 003082 374 ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453 (850)
Q Consensus 374 ~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 453 (850)
...|++++|...|++..+.... +..+|..+...+.+.|++++|...|++..+.. +.+...|..+...|.+.|++++|.
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999886533 78899999999999999999999999999874 456788999999999999999999
Q ss_pred HHHHHHhhcc
Q 003082 454 RLFRSWTLSK 463 (850)
Q Consensus 454 ~l~~~m~~~~ 463 (850)
+.|+......
T Consensus 228 ~~~~~a~~~~ 237 (258)
T 3uq3_A 228 ETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 9999887653
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.38 E-value=1.3e-11 Score=127.08 Aligned_cols=251 Identities=10% Similarity=-0.081 Sum_probs=130.0
Q ss_pred hcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcC
Q 003082 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK 204 (850)
Q Consensus 125 ~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (850)
..|++++|+..|+++.+. .+.. .+....++...+..+...|++++|+..+++.+... |+....+..
T Consensus 17 ~~~~~~~A~~~~~~~~~~--~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~-------- 82 (275)
T 1xnf_A 17 PTLQQEVILARMEQILAS--RALT--DDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNY-------- 82 (275)
T ss_dssp CCHHHHHHHHHHHHHHTS--SCCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHH--------
T ss_pred ccchHHHHHHHHHHHHhc--cccc--CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHH--------
Confidence 568888888888888854 2211 12224556666667777888888888888877654 544444444
Q ss_pred CChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 205 PDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 205 ~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
++..|...|++++|+..|+.+.+..+ .+..++..+..+|.+.|++++|...|+.+.+
T Consensus 83 ----------------------la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 83 ----------------------LGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp ----------------------HHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHccCHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44445555555555555555444321 2344455555555555555555555555544
Q ss_pred CCCCcCHHHHHHHHH--hhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccC
Q 003082 285 QNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362 (850)
Q Consensus 285 ~g~~pd~~t~~~ll~--~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d 362 (850)
.. |+.......+. ...+++++|...+++..... +++...+. ++..+...++.++|...+.......... ...+
T Consensus 140 ~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~ 214 (275)
T 1xnf_A 140 DD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSL-AEHL 214 (275)
T ss_dssp HC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHH-HHHH
T ss_pred hC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccc-cccc
Confidence 31 22111111111 12245555555554444432 22333332 5555556666666666666654311000 0011
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003082 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421 (850)
Q Consensus 363 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 421 (850)
..+|..+...|...|++++|...|++..+.. |+. +.....++...|++++|+..+
T Consensus 215 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 215 SETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 4566666777777777777777777777653 221 222244555666666666654
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.38 E-value=5.4e-12 Score=129.91 Aligned_cols=249 Identities=9% Similarity=-0.043 Sum_probs=183.9
Q ss_pred hhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 003082 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYD 245 (850)
Q Consensus 166 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~ 245 (850)
...|++++|+..++++++.. +... |....++..++..|...|++++|+..|+
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~--~~~~--------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 67 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASR--ALTD--------------------------DERAQLLYERGVLYDSLGLRALARNDFS 67 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSS--CCCH--------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHhcc--cccC--------------------------chhHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 35689999999999988753 1110 0112567788999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh--hcCChHHHHHHHHHHHHcCCCCC
Q 003082 246 ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMAD 323 (850)
Q Consensus 246 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~--~~~~~~~a~~l~~~m~~~g~~pd 323 (850)
++.+..+ .+..+|..+..+|...|++++|+..|+...+... .+...+..+-.+ ..|++++|.+.|+++.+.. |+
T Consensus 68 ~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~ 143 (275)
T 1xnf_A 68 QALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PN 143 (275)
T ss_dssp HHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT
T ss_pred HHHHcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CC
Confidence 9988643 4688999999999999999999999999987532 234455555444 4689999999999998863 55
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHH
Q 003082 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP---NTIT 400 (850)
Q Consensus 324 ~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t 400 (850)
......++..+...|++++|...|...... .+++...+ .++..+...++.++|...+.......... +..+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 217 (275)
T 1xnf_A 144 DPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-----SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSET 217 (275)
T ss_dssp CHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-----SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHH
Confidence 455555666667889999999999877763 23344444 47777888888999999998886542211 1578
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 003082 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456 (850)
Q Consensus 401 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~ 456 (850)
|..+...|.+.|++++|...|++..+.. |+. +.....++...|++++|.+-+
T Consensus 218 ~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 218 NFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 8899999999999999999999998753 422 223355677888888887765
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.37 E-value=8.5e-11 Score=120.77 Aligned_cols=229 Identities=14% Similarity=0.018 Sum_probs=165.2
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC---CCCcc----hHHHHHH
Q 003082 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV---PRADI----LFCNFVR 229 (850)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---p~~~~----~~~~li~ 229 (850)
.+...+..+...|++++|+..+++.++.. |+....+..++..+...|++++|+.+++.+ |.+.. ++..++.
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 34555666778999999999999998865 777788999999999999999999988764 33332 3788999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHH-Hh-hcCChHH
Q 003082 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM-NV-NAHDLKF 307 (850)
Q Consensus 230 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll-~~-~~~~~~~ 307 (850)
.|...|++++|+..|+...+..+ .+..+|..+...|...|++++|+..|++..+.. +.+...+..+- .. ..+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888543 356788999999999999999999999887652 22344444443 33 3357778
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhhhcCCcccC------HhHHHHHHHHHHhcCC
Q 003082 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGN---TVLAQEIYGEVKHLEAKGVLKLD------VFTYSTIVKVFADAKW 378 (850)
Q Consensus 308 a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~---~~~A~~i~~~m~~~~~~g~~~~d------~~ty~~li~~~~~~g~ 378 (850)
|.+.|++..+.. +.+...+..+...+...|+ +++|...|++..+..... |+ ..+|..+...|...|+
T Consensus 161 A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 161 ADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG---GAKYKDELIEANEYIAYYYTINRD 236 (272)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGG---GGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcc---cccchHHHHHHHHHHHHHHHHcCC
Confidence 888888777653 3346666667777777777 777777777776643221 22 1355556666666677
Q ss_pred HHHHHHHHHHHHHCC
Q 003082 379 WQMALKVKEDMLSAG 393 (850)
Q Consensus 379 ~~~A~~l~~~m~~~g 393 (850)
+++|...|++..+..
T Consensus 237 ~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 237 KVKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC
Confidence 777777776666543
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.36 E-value=4.9e-11 Score=118.39 Aligned_cols=198 Identities=9% Similarity=-0.060 Sum_probs=137.1
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+..++..+...|++++|+..|+.+++. .|.... .+......+...|++++|+..|+++.+. .|+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-- 75 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKS--DPKNEL------AWLVRAEIYQYLKVNDKAQESFRQALSI--KPDS-- 75 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH------HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC--
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CccchH------HHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCC--
Confidence 788889999999999999999999999987 343222 2223334566899999999999999854 5543
Q ss_pred chhhhHHHHHHHHhhhhc-CcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHH
Q 003082 151 DGSGFKLLKNECQRLLDS-GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFC 225 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~p~~~~~~~ 225 (850)
...+...+..+... |++++|+..++++.+....|.....+..++..+...|++++|+.+++. .|.+..++.
T Consensus 76 ----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 151 (225)
T 2vq2_A 76 ----AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFK 151 (225)
T ss_dssp ----HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred ----hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHH
Confidence 34556667778889 999999999999987333344455566666666677777777666544 255555666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 226 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
.++..|.+.|++++|...|+.+.+..+..+...+..+...+...|+.++|...++.+.+
T Consensus 152 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 152 ELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 66666666777777777666666543213455556666666666666666666666654
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.36 E-value=7.3e-11 Score=126.96 Aligned_cols=243 Identities=10% Similarity=0.016 Sum_probs=172.6
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCC-hHHHHHHhhhC----CCCcchHHHHHH
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPD-VNLAIRYACIV----PRADILFCNFVR 229 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~----p~~~~~~~~li~ 229 (850)
.+++......+...|++++|+..+++++... |+....|+.++.++...|+ +++|+..|+.+ |.+..+|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 4556666667778899999999999998866 8888788888888888885 88888777653 777778888888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHH
Q 003082 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTL 309 (850)
Q Consensus 230 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~ 309 (850)
+|.+.|++++|+..|+.+++..+ .+..+|..+..++.+.|++++|+..|+++.+..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~----------------------- 230 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED----------------------- 230 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-----------------------
T ss_pred HHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----------------------
Confidence 88888888888888888877532 366777788888888887777777777766541
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHH-cCChHHH-----HHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcC--CHHH
Q 003082 310 EVYKNMQKLGVMADMASYNILLKACCL-AGNTVLA-----QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK--WWQM 381 (850)
Q Consensus 310 ~l~~~m~~~g~~pd~~t~~~Ll~~~~~-~g~~~~A-----~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g--~~~~ 381 (850)
+-+...|+.+..++.+ .|..++| .+.|+....+ -+-+...|+.+...+...| ++++
T Consensus 231 -----------P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l-----~P~~~~a~~~l~~ll~~~g~~~~~~ 294 (382)
T 2h6f_A 231 -----------VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL-----VPHNESAWNYLKGILQDRGLSKYPN 294 (382)
T ss_dssp -----------TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHTTTCGGGCHH
T ss_pred -----------CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHccCccchHH
Confidence 2356677777777777 5554666 4667776663 1234567777777777777 5788
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHH-HHcCCCCC-HHHHHHHHHHH
Q 003082 382 ALKVKEDMLSAGVTPNTITWSSLINACANAG---------LVEQAMHLFEEM-LQAGCEPN-SQCCNILLQAC 443 (850)
Q Consensus 382 A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g---------~~~~A~~l~~~m-~~~g~~p~-~~~~~~ll~~~ 443 (850)
|++.+.++ +.. ..+...+..+...|.+.| .+++|+.+|+++ .+. .|. ...|..+...+
T Consensus 295 a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 295 LLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK--DTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHH
T ss_pred HHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHH
Confidence 88888777 332 335677888888887764 258888888887 543 343 33455554443
No 48
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.34 E-value=5e-11 Score=130.34 Aligned_cols=319 Identities=14% Similarity=0.011 Sum_probs=216.8
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+...+..+...|++++|+..|+++++.. |..... ....+......+...|++++|+..|+++.+..-... .
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~ 82 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKT--LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG--D 82 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--C
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHH--HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc--c
Confidence 5667788999999999999999999999984 332111 122333445566789999999999999875411111 1
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~ 230 (850)
.+....++...+..+...|++++|+..+++.+... +.. ++.. ....++..+...
T Consensus 83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~--------------~~~~----------~~~~~~~~l~~~ 136 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIS--REL--------------NDKV----------GEARALYNLGNV 136 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH--------------TCHH----------HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--Hhc--------------cccc----------chHHHHHHHHHH
Confidence 22234566667777788899999999988876532 100 0000 001456778888
Q ss_pred HHhcCC--------------------hHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 231 FGKKRD--------------------LVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 231 ~~~~g~--------------------~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
|...|+ +++|+..|++..+. +..+ ...++..+...|...|++++|...|++..+.
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888888 88888888776542 1112 2457888889999999999999999876532
Q ss_pred CCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCccc-CH
Q 003082 286 NVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGV-MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DV 363 (850)
Q Consensus 286 g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~-~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~-d~ 363 (850)
... .+. .....++..+...|...|++++|...|++...........+ ..
T Consensus 217 --------------------------~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 267 (406)
T 3sf4_A 217 --------------------------AKE---FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267 (406)
T ss_dssp --------------------------HHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------------------------HHh---cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence 111 110 01134777888899999999999999998876532221111 15
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CH
Q 003082 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-PN----TITWSSLINACANAGLVEQAMHLFEEMLQA----GCEP-NS 433 (850)
Q Consensus 364 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~ 433 (850)
.++..+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|...|++..+. +..+ ..
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 347 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGEL 347 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 57888888999999999999999887653111 12 557888889999999999999999987753 2111 23
Q ss_pred HHHHHHHHHHHHhCCHH
Q 003082 434 QCCNILLQACVEACQFD 450 (850)
Q Consensus 434 ~~~~~ll~~~~~~g~~~ 450 (850)
.++..+...|...|+..
T Consensus 348 ~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 348 TARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhhHhH
Confidence 45666777777777653
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.34 E-value=5e-10 Score=115.25 Aligned_cols=145 Identities=12% Similarity=0.016 Sum_probs=82.6
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHh----
Q 003082 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCL----AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD---- 375 (850)
Q Consensus 304 ~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~----~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~---- 375 (850)
++++|++.|++..+.+ +...+..+...|.. .+++++|...|++..+. .+...+..+...|..
T Consensus 93 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~~~a~~~lg~~~~~~~~~ 162 (273)
T 1ouv_A 93 NTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-------NDGDGCTILGSLYDAGRGT 162 (273)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHTSSS
T ss_pred CHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-------CcHHHHHHHHHHHHcCCCC
Confidence 4444444444444433 44555555555655 66666666666665541 134455555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----hC
Q 003082 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN----AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE----AC 447 (850)
Q Consensus 376 ~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~----~g 447 (850)
.+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.+ .+
T Consensus 163 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~ 236 (273)
T 1ouv_A 163 PKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTR 236 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCccc
Confidence 666666666666666543 44555666666666 666666666666666543 24455555666666 66
Q ss_pred CHHHHHHHHHHHhhccc
Q 003082 448 QFDRAFRLFRSWTLSKT 464 (850)
Q Consensus 448 ~~~~A~~l~~~m~~~~~ 464 (850)
++++|.+.|+...+.+.
T Consensus 237 ~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 237 NEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CSTTHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 66666666666555543
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.33 E-value=2.5e-10 Score=113.14 Aligned_cols=167 Identities=7% Similarity=-0.161 Sum_probs=98.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC-GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~ 300 (850)
.++..++..|...|++++|+..|+++.+.. +.+..++..+...|... |++++|...|+.+.+
T Consensus 43 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~---------------- 105 (225)
T 2vq2_A 43 LAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALA---------------- 105 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc----------------
Confidence 344444455555555555555555554432 12344455555555555 555555555554443
Q ss_pred hcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCH
Q 003082 301 NAHDLKFTLEVYKNMQKLGVMA-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379 (850)
Q Consensus 301 ~~~~~~~a~~l~~~m~~~g~~p-d~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~ 379 (850)
.+..| +...+..+...+...|++++|...|+++.+. .+.+...+..+...+...|++
T Consensus 106 -----------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 106 -----------------DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA-----QPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp -----------------STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHHTCH
T ss_pred -----------------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCH
Confidence 11122 2456666777777777777777777777653 123456677777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003082 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (850)
Q Consensus 380 ~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 427 (850)
++|...++++.+.....+...+..+...+...|+.+.|..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 777777777766543135666666667777777777777777777654
No 51
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.33 E-value=3.8e-11 Score=131.77 Aligned_cols=277 Identities=14% Similarity=0.022 Sum_probs=184.6
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCc----ccHHHHHHHHHcCCChHHHHHHhhhC----------CCC
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKEL----DEEFRIVQLCVNKPDVNLAIRYACIV----------PRA 220 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~----------p~~ 220 (850)
...+...+..+...|++++|+..+++.++.. |++. ..+..++..+...|++++|+.+++.+ +..
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 3445556667778999999999999998864 5443 34556666667777777776665442 111
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCC-----------------HHHHHHH
Q 003082 221 DILFCNFVREFGKKRDLVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGD-----------------YMKSRAI 278 (850)
Q Consensus 221 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~-----------------~~~A~~~ 278 (850)
..++..+...|...|++++|+..|++..+. +..+ ...++..+...|...|+ +++|+..
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 244556666666677777776666665542 1111 23355666666666666 5555544
Q ss_pred HHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcC
Q 003082 279 YEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGV-MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357 (850)
Q Consensus 279 ~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~-~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g 357 (850)
|++.. +++... +- .....++..+...|...|++++|...|++..+.....
T Consensus 206 ~~~al--------------------------~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 206 YQENL--------------------------KLMRDL---GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHH--------------------------HHHHHH---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--------------------------HHHHHc---CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 44322 222221 11 1124577888899999999999999999887753221
Q ss_pred C-cccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---
Q 003082 358 V-LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-----PNTITWSSLINACANAGLVEQAMHLFEEMLQAG--- 428 (850)
Q Consensus 358 ~-~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g--- 428 (850)
. ......+|..+...|...|++++|...+++..+.... ....++..+...|...|++++|...|++..+..
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 0 0111237888889999999999999999887653211 114678888999999999999999999887631
Q ss_pred -C-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Q 003082 429 -C-EPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (850)
Q Consensus 429 -~-~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 462 (850)
. .....++..+...|.+.|++++|.+.|++....
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1 111346788889999999999999999987654
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.33 E-value=1.6e-09 Score=111.49 Aligned_cols=222 Identities=15% Similarity=0.051 Sum_probs=190.0
Q ss_pred CCCcccHHHHHHHHHcCCChHHHHHHhhhC--CCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 003082 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIV--PRADILFCNFVREFGK----KRDLVSALRAYDASKKHLSSPNMYICRT 261 (850)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--p~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 261 (850)
|.++..+..++..+...|++++|+.+|+.. +.+..++..+...|.. .+++++|+..|++..+.+ +..++..
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 455667888999999999999999999775 6666888999999999 999999999999999875 7888999
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH--hh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003082 262 IIDVCGI----CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VN----AHDLKFTLEVYKNMQKLGVMADMASYNILL 331 (850)
Q Consensus 262 li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~--~~----~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll 331 (850)
+...|.. .+++++|+..|+...+.+ +...+..+-. .. .++.++|++.|++..+.+ +...+..+.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 9999999 999999999999999876 4444444433 33 679999999999999876 677888898
Q ss_pred HHHHH----cCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003082 332 KACCL----AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD----AKWWQMALKVKEDMLSAGVTPNTITWSS 403 (850)
Q Consensus 332 ~~~~~----~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~ty~~ 403 (850)
..|.. .+++++|...|+...+. .+...+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 223 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDL-------KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFN 223 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHH
Confidence 99998 99999999999998762 356778888889999 999999999999999875 3678888
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHcC
Q 003082 404 LINACAN----AGLVEQAMHLFEEMLQAG 428 (850)
Q Consensus 404 li~~~~~----~g~~~~A~~l~~~m~~~g 428 (850)
+...|.+ .+++++|...|++..+.|
T Consensus 224 l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 224 LGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8899998 999999999999998875
No 53
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.32 E-value=7.1e-11 Score=125.05 Aligned_cols=296 Identities=14% Similarity=0.018 Sum_probs=185.7
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+...+..+...|++++|+..|+++++.. |.... .....+......+...|++++|+..|+++.+...... .
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~ 78 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLK--TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG--D 78 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--C
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc--c
Confidence 4455667888899999999999999999884 33211 1122334445567789999999999998875311100 1
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~ 230 (850)
......++...+..+...|++++|+..+++.+.......+ ... ...++..+...
T Consensus 79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------~~~----------~~~~~~~l~~~ 132 (338)
T 3ro2_A 79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND----------------KVG----------EARALYNLGNV 132 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------------HHH----------HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC----------------chH----------HHHHHHHHHHH
Confidence 1222455666677777889999999988876543211000 000 01456677788
Q ss_pred HHhcCC--------------------hHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 231 FGKKRD--------------------LVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 231 ~~~~g~--------------------~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
|...|+ +++|+..|++.... +..+ ...++..+...|...|++++|...|++..+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 212 (338)
T 3ro2_A 133 YHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 212 (338)
T ss_dssp HHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 888888 88888888766542 1112 2446888888899999999999998876532
Q ss_pred CCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcc-cCHh
Q 003082 286 NVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK-LDVF 364 (850)
Q Consensus 286 g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~-~d~~ 364 (850)
..... .......++..+...+...|++++|...+++........... ....
T Consensus 213 --------------------------~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 213 --------------------------AKEFG--DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp --------------------------HHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------------------HHhcC--ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 11110 001123467778888889999999999988877643221101 1144
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 365 TYSTIVKVFADAKWWQMALKVKEDMLSAG----VT-PNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (850)
Q Consensus 365 ty~~li~~~~~~g~~~~A~~l~~~m~~~g----~~-p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 426 (850)
++..+...|...|++++|...+++..+.. -. ....++..+...|.+.|++++|...+++..+
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 56666777777777777777777665321 00 0123455566666666666666666666654
No 54
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.32 E-value=3.1e-11 Score=132.53 Aligned_cols=296 Identities=14% Similarity=0.014 Sum_probs=186.3
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+..++..+...|++++|+..|+++++.. |..... ....+......+...|++++|+..|+++.+...... .
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~ 121 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRT--LSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN--D 121 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--C
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc--C
Confidence 5666688899999999999999999999984 332211 112333444566789999999999999875411111 1
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~ 230 (850)
......++...+..+...|++++|+..+++.+...... ++. +....++..+...
T Consensus 122 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----------------~~~----------~~~~~~~~~l~~~ 175 (411)
T 4a1s_A 122 RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL----------------GDR----------LSEGRALYNLGNV 175 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----------------TCH----------HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh----------------hch----------HHHHHHHHHHHHH
Confidence 22335566677777888999999999998876532000 000 0011455667777
Q ss_pred HHhcCC-----------------hHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 003082 231 FGKKRD-----------------LVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT 288 (850)
Q Consensus 231 ~~~~g~-----------------~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 288 (850)
|...|+ +++|+..|++..+. +..+ ...++..+...|...|++++|+..|++..+....
T Consensus 176 ~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 176 YHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 777777 77777777665442 1112 2346777888888888888888888887643100
Q ss_pred -cCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCC-cccCHhHH
Q 003082 289 -LNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV-LKLDVFTY 366 (850)
Q Consensus 289 -pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~-~~~d~~ty 366 (850)
.+.. ....++..+...|...|++++|...|++......... ......++
T Consensus 256 ~~~~~-----------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 306 (411)
T 4a1s_A 256 FGDRA-----------------------------AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSC 306 (411)
T ss_dssp HTCHH-----------------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCcH-----------------------------HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 0000 0134455666666677777777777766665432210 11124567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC----C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003082 367 STIVKVFADAKWWQMALKVKEDMLSAG----V-TPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (850)
Q Consensus 367 ~~li~~~~~~g~~~~A~~l~~~m~~~g----~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 427 (850)
..+...|...|++++|...+++..... . .....++..+...|.+.|++++|...|++..+.
T Consensus 307 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 307 YSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 777777777777777777777665421 0 011346777778888888888888888887764
No 55
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.32 E-value=7.3e-10 Score=112.28 Aligned_cols=200 Identities=14% Similarity=0.004 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003082 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (850)
Q Consensus 324 ~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ 403 (850)
...+..+...+...|++++|.+.|+++.+. .+.+...|..+...|...|++++|...++++.+.... +...+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 110 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI-----DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNN 110 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHH
Confidence 455666667777777777777777776653 1234556666667777777777777777776655322 5566666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhh
Q 003082 404 LINACANAGLVEQAMHLFEEMLQAGCEP-NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482 (850)
Q Consensus 404 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~ 482 (850)
+...|...|++++|...|+++.+.+..| +...+..+...|.+.|++++|.+.|+......
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------------------- 171 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN------------------- 171 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------------------
Confidence 6677777777777777777666522233 33455666666666666666666665543210
Q ss_pred hhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 003082 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSG 562 (850)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g 562 (850)
+.+...+..+...|.+.|
T Consensus 172 --------------------------------------------------------------~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 172 --------------------------------------------------------------RNQPSVALEMADLLYKER 189 (252)
T ss_dssp --------------------------------------------------------------SCCHHHHHHHHHHHHHTT
T ss_pred --------------------------------------------------------------cccHHHHHHHHHHHHHcC
Confidence 123456666777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 563 NVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (850)
Q Consensus 563 ~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 611 (850)
++++|...++++.+.. +.+...+..+...+...|+.++|.++++++.+
T Consensus 190 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 190 EYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp CHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 7777777777776642 34566677777777777777777777777765
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.30 E-value=1.2e-10 Score=127.34 Aligned_cols=275 Identities=15% Similarity=0.034 Sum_probs=184.9
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCC----cccHHHHHHHHHcCCChHHHHHHhhhC-------C---CCcc
Q 003082 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKE----LDEEFRIVQLCVNKPDVNLAIRYACIV-------P---RADI 222 (850)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~-------p---~~~~ 222 (850)
.+...+..+...|++++|+..+++.++.. |.+ ...+..++..+...|++++|+.+++.+ . ....
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 34555666778999999999999988764 444 234556666777777777777665542 1 1124
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C----CHHHHHHHHHHHHhcCC--------------------HHHHHH
Q 003082 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSS-P----NMYICRTIIDVCGICGD--------------------YMKSRA 277 (850)
Q Consensus 223 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p----~~~~~~~li~~~~~~g~--------------------~~~A~~ 277 (850)
++..++..|...|++++|+..|++..+.... + ...++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 4556666667777777777666665542100 1 13355666666666666 555555
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhc
Q 003082 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVM-ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356 (850)
Q Consensus 278 ~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~-pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~ 356 (850)
.|++.. +++.. .+.. ....++..+...|...|++++|...|++..+....
T Consensus 169 ~~~~al--------------------------~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (406)
T 3sf4_A 169 FYEENL--------------------------SLVTA---LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219 (406)
T ss_dssp HHHHHH--------------------------HHHHH---TTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--------------------------HHHHh---ccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 554432 11111 1111 12457888889999999999999999988875433
Q ss_pred CCc-ccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-
Q 003082 357 GVL-KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-PN----TITWSSLINACANAGLVEQAMHLFEEMLQAGC- 429 (850)
Q Consensus 357 g~~-~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~- 429 (850)
... .....+|..+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+..-
T Consensus 220 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 220 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 211 111347888899999999999999999988643111 12 56788899999999999999999998876411
Q ss_pred CCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Q 003082 430 EPN----SQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (850)
Q Consensus 430 ~p~----~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 462 (850)
..+ ..++..+...|.+.|++++|.+.+++....
T Consensus 300 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 300 LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 112 456788889999999999999999987654
No 57
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.29 E-value=1.1e-10 Score=123.56 Aligned_cols=274 Identities=14% Similarity=0.042 Sum_probs=180.1
Q ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCC----cccHHHHHHHHHcCCChHHHHHHhhhC-------C---CCcch
Q 003082 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKE----LDEEFRIVQLCVNKPDVNLAIRYACIV-------P---RADIL 223 (850)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~-------p---~~~~~ 223 (850)
+...+..+...|++++|+..++++++.. |++ ...+..++..+...|++++|+.+++.. + ....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3344556678899999999999988764 444 234555666666677777776665442 1 11234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCC--------------------HHHHHHH
Q 003082 224 FCNFVREFGKKRDLVSALRAYDASKKHLSS-PN----MYICRTIIDVCGICGD--------------------YMKSRAI 278 (850)
Q Consensus 224 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~--------------------~~~A~~~ 278 (850)
+..++..|...|++++|+..|++..+.... ++ ..++..+...|...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 555666666666666666666655432100 11 2255555566666666 5555544
Q ss_pred HHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcC
Q 003082 279 YEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGV-MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357 (850)
Q Consensus 279 ~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~-~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g 357 (850)
+++.. +++... +. .....++..+...+...|++++|.+.|++..+.....
T Consensus 166 ~~~a~--------------------------~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 166 YEENL--------------------------SLVTAL---GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHHHH--------------------------HHHHHH---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--------------------------HHHHhc---CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 44332 111111 11 1124577888899999999999999999887653221
Q ss_pred C-cccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 003082 358 V-LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-PN----TITWSSLINACANAGLVEQAMHLFEEMLQA---- 427 (850)
Q Consensus 358 ~-~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~ty~~li~~~~~~g~~~~A~~l~~~m~~~---- 427 (850)
. ......++..+...|...|++++|...+++..+.... .+ ..++..+...+...|++++|...+++..+.
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 1 1112347888889999999999999999987643111 12 557888889999999999999999988763
Q ss_pred CCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Q 003082 428 GCE-PNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (850)
Q Consensus 428 g~~-p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 462 (850)
+.. ....++..+...|.+.|++++|.+.+++....
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 111 11346778899999999999999999987654
No 58
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.28 E-value=4.6e-09 Score=116.49 Aligned_cols=345 Identities=12% Similarity=0.033 Sum_probs=161.3
Q ss_pred HhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCCh---HHHHHHhhhCC-CCcchHHHHHHHHHhcC---
Q 003082 163 QRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDV---NLAIRYACIVP-RADILFCNFVREFGKKR--- 235 (850)
Q Consensus 163 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~p-~~~~~~~~li~~~~~~g--- 235 (850)
..+.+.|++++|++.|++..+.+ ++..+..++..|...|++ ++|+.+|+..- .+..++..|...+...+
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~ 86 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGAT 86 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC----------------------------CHHHHHHHHHTC--CC
T ss_pred HHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC
Confidence 34456799999999999987754 344556677777777777 77777776642 24456666776555554
Q ss_pred --ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCcCHHHHHHHHHhhcC----ChH
Q 003082 236 --DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM---KSRAIYEDLRSQNVTLNIYVFNSLMNVNAH----DLK 306 (850)
Q Consensus 236 --~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~----~~~ 306 (850)
++++|+..|+...+.|. ++ .+..|...|...+... ++.+.+......|. +........+....+ +.+
T Consensus 87 ~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~-~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 87 EAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY-PEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC-TTHHHHHHHHHHHHTCGGGGHH
T ss_pred CcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC-HHHHHHHHHHHHcCCCcccCHH
Confidence 66778888877777553 22 5556666665554332 23333333333332 222222222222222 222
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhc----CCH
Q 003082 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAG---NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA----KWW 379 (850)
Q Consensus 307 ~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g---~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~----g~~ 379 (850)
.+..+++.... .+...+..|...|.+.| +.++|.+.|+...+ .| .++...+..|...|... +++
T Consensus 163 ~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~---~g--~~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 163 DVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVS---RG--TVTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp HHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---TT--CSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred HHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH---CC--CHHHHHHHHHHHHHhCCCCCCCCH
Confidence 22222222211 12224444444455555 44455555444443 11 22333223333333322 345
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 003082 380 QMALKVKEDMLSAGVTPNTITWSSLINA-C--ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456 (850)
Q Consensus 380 ~~A~~l~~~m~~~g~~p~~~ty~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~ 456 (850)
++|...|++.. .| +...+..|... + ...+++++|..+|++..+.| +...+..|-..|. .|.
T Consensus 234 ~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~-------- 297 (452)
T 3e4b_A 234 KTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGK-------- 297 (452)
T ss_dssp HHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCS--------
T ss_pred HHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCC--------
Confidence 55555555443 21 23333333333 1 23445555555555544443 3333333333333 220
Q ss_pred HHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhccHHHHHHHH
Q 003082 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALM 536 (850)
Q Consensus 457 ~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~a~~l~ 536 (850)
|+ -++.++|...|
T Consensus 298 -----------------------------------------------------g~--------------~~d~~~A~~~~ 310 (452)
T 3e4b_A 298 -----------------------------------------------------WV--------------PADAKAAEAHF 310 (452)
T ss_dssp -----------------------------------------------------SS--------------CCCHHHHHHHH
T ss_pred -----------------------------------------------------CC--------------CCCHHHHHHHH
Confidence 00 01344555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 003082 537 NEMRTVGLSPNHISWTILIDACGG----SGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR----SKRLKQAFSLFEE 608 (850)
Q Consensus 537 ~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~----~g~~~~A~~l~~~ 608 (850)
+... .-+...+..|...|.. ..+.++|..+|++..+.|. ...+..|...|.. ..+.++|..+|+.
T Consensus 311 ~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 311 EKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp HTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred HHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 5444 2244555556666655 3488999999999888763 3345556666653 4588999999998
Q ss_pred HHHCCC
Q 003082 609 MKHYQI 614 (850)
Q Consensus 609 m~~~g~ 614 (850)
..+.|.
T Consensus 384 A~~~g~ 389 (452)
T 3e4b_A 384 AKAQDT 389 (452)
T ss_dssp HHTTCC
T ss_pred HHHCCC
Confidence 888764
No 59
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.28 E-value=1.3e-10 Score=116.98 Aligned_cols=197 Identities=14% Similarity=0.068 Sum_probs=98.9
Q ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCh
Q 003082 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDL 237 (850)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~ 237 (850)
+...+..+...|++++|+..++++++.. |+.. .++..++..|...|++
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~------------------------------~~~~~la~~~~~~~~~ 73 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDA------------------------------IPYINFANLLSSVNEL 73 (243)
T ss_dssp ----------------CCTTHHHHHTTC--TTCH------------------------------HHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhC--cccH------------------------------HHHHHHHHHHHHcCCH
Confidence 4444555566777888887777776543 4333 4455566666666667
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 003082 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQK 317 (850)
Q Consensus 238 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~ 317 (850)
++|+..|+++.+.. +.+..++..+...|...|++++|...|+++.+..
T Consensus 74 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------------------------------- 121 (243)
T 2q7f_A 74 ERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG------------------------------- 121 (243)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------------------------------
T ss_pred HHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------------------------------
Confidence 77777766666542 2355666666666777777777777776665431
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003082 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397 (850)
Q Consensus 318 ~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 397 (850)
+.+...+..+...+.+.|++++|...|+++.+. .+.+...+..+...|...|++++|...|+++.+... .+
T Consensus 122 ---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~ 192 (243)
T 2q7f_A 122 ---MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL-----NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP-GH 192 (243)
T ss_dssp ---CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT-TC
T ss_pred ---CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cc
Confidence 112333444444555555555555555554442 122344445555555555555555555555544321 13
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003082 398 TITWSSLINACANAGLVEQAMHLFEEMLQA 427 (850)
Q Consensus 398 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 427 (850)
..++..+...|.+.|++++|...|+++.+.
T Consensus 193 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 193 ADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 445555555555555555555555555543
No 60
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.28 E-value=2.3e-09 Score=118.89 Aligned_cols=344 Identities=10% Similarity=-0.055 Sum_probs=221.1
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCch---hHHHHHHHHHHHcCCCCccccc
Q 003082 75 ADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRI---DCVVGVLKKLNELGVAPLELFD 151 (850)
Q Consensus 75 ~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~---~~A~~~l~~~~~~~~~p~~~~~ 151 (850)
..++..+.+.|++++|+.+|+++.+.+ ++..... + +. .+...|+. ++|+..|+++.+. .|+.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g-~~~A~~~---L---g~---~y~~~g~~~d~~~A~~~~~~A~~~--~~~A--- 71 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG-YSEAQVG---L---AD---IQVGTRDPAQIKQAEATYRAAADT--SPRA--- 71 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-CCTGGGT---C---C---------------------------------C---
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC-CHHHHHH---H---HH---HHHccCCCCCHHHHHHHHHHHHhC--CHHH---
Confidence 357888899999999999999998876 3332211 1 11 12245777 9999999999853 3322
Q ss_pred hhhhHHHHHHHHhhhhcC-----cHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHH---HHHHhhhC--CCCc
Q 003082 152 GSGFKLLKNECQRLLDSG-----EVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNL---AIRYACIV--PRAD 221 (850)
Q Consensus 152 ~~~~~~l~~~~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~--p~~~ 221 (850)
...++..+...| ++++|+..|++..+.+ .......++..|...+.... +...+... +...
T Consensus 72 ------~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~ 141 (452)
T 3e4b_A 72 ------QARLGRLLAAKPGATEAEHHEAESLLKKAFANG----EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYP 141 (452)
T ss_dssp ------HHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT----CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCT
T ss_pred ------HHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCH
Confidence 223333222333 8899999999988754 44578899999987665443 33333332 3345
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG---DYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~pd~~t~~~ll 298 (850)
.+...|...|...+.++++......+.+.-...+...+..|...|.+.| ++++|+..|+...+.|. ++...+..|-
T Consensus 142 ~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg 220 (452)
T 3e4b_A 142 EAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVA 220 (452)
T ss_dssp THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHH
Confidence 7888999999999866555544332222111123338888999999999 99999999999998874 4444322222
Q ss_pred Hhh------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHH
Q 003082 299 NVN------AHDLKFTLEVYKNMQKLGVMADMASYNILLKA-C--CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369 (850)
Q Consensus 299 ~~~------~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~-~--~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~l 369 (850)
..+ .++.++|++.|++.. .| +...+..|-.. + ...++.++|.+.|++..+ . -+...+..|
T Consensus 221 ~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~---~----g~~~A~~~L 289 (452)
T 3e4b_A 221 RVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA---A----DQPRAELLL 289 (452)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH---T----TCHHHHHHH
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---C----CCHHHHHHH
Confidence 222 258899999999987 44 56666677666 3 468999999999998875 2 266677777
Q ss_pred HHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003082 370 VKVFADAK-----WWQMALKVKEDMLSAGVTPNTITWSSLINACAN----AGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440 (850)
Q Consensus 370 i~~~~~~g-----~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll 440 (850)
-..|. .| ++++|...|++.. .| +...+..|...|.. ..+.++|..+|+...+.|. ......|-
T Consensus 290 g~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg 361 (452)
T 3e4b_A 290 GKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIA 361 (452)
T ss_dssp HHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHH
T ss_pred HHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHH
Confidence 77776 55 9999999999877 33 67778888777766 3489999999999988773 33455555
Q ss_pred HHHHH----hCCHHHHHHHHHHHhhcc
Q 003082 441 QACVE----ACQFDRAFRLFRSWTLSK 463 (850)
Q Consensus 441 ~~~~~----~g~~~~A~~l~~~m~~~~ 463 (850)
..|.. ..+.++|...|+.....+
T Consensus 362 ~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 362 QLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 55553 358889999988776544
No 61
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.28 E-value=3.5e-10 Score=113.74 Aligned_cols=200 Identities=9% Similarity=0.022 Sum_probs=155.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhh
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~ 301 (850)
..+..++..+...|++++|+..|+++.+.. +.+..++..+...|...|++++|+..|+++.+..
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------------- 87 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD--------------- 87 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------------
Confidence 567778888999999999999999998853 2467888899999999999999999998876431
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHH
Q 003082 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (850)
Q Consensus 302 ~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~ 381 (850)
+.+...+..+...+...|++++|.+.|+++.+. .+.+...+..+...+...|++++
T Consensus 88 -------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~ 143 (243)
T 2q7f_A 88 -------------------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA-----GMENGDLFYMLGTVLVKLEQPKL 143 (243)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TCCSHHHHHHHHHHHHHTSCHHH
T ss_pred -------------------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhccHHH
Confidence 236777888899999999999999999999874 24467789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 003082 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (850)
Q Consensus 382 A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 461 (850)
|...++++.+... .+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...|.+.|++++|.+.++....
T Consensus 144 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 144 ALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 9999999987643 378889999999999999999999999998874 45678899999999999999999999998876
Q ss_pred cc
Q 003082 462 SK 463 (850)
Q Consensus 462 ~~ 463 (850)
..
T Consensus 222 ~~ 223 (243)
T 2q7f_A 222 IQ 223 (243)
T ss_dssp HC
T ss_pred cC
Confidence 53
No 62
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.27 E-value=4.4e-10 Score=115.33 Aligned_cols=230 Identities=10% Similarity=-0.025 Sum_probs=150.5
Q ss_pred HHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHH
Q 003082 194 EFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCG 267 (850)
Q Consensus 194 ~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~ 267 (850)
+...+..+...|++++|+.+++.+ |.+..++..++..|...|++++|+..|+...+....+ ...+|..+...|.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 444555555555555555555432 4444455555555555555555555555555522111 1223555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 003082 268 ICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347 (850)
Q Consensus 268 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~ 347 (850)
..|++++|+..|+... +.. +.+..++..+...|...|++++|...|
T Consensus 86 ~~~~~~~A~~~~~~a~---------------------------------~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 131 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAV---------------------------------DRD-TTRLDMYGQIGSYFYNKGNFPLAIQYM 131 (272)
T ss_dssp HTTCHHHHHHHHHHHH---------------------------------HHS-TTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcccHHHHHHHHHHHH---------------------------------hcC-cccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 5555555555555544 332 335678888999999999999999999
Q ss_pred HHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHH
Q 003082 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL---VEQAMHLFEEM 424 (850)
Q Consensus 348 ~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~---~~~A~~l~~~m 424 (850)
++..+. .+.+...|..+...+...+++++|...|++..+.... +...+..+...+...|+ +++|...|++.
T Consensus 132 ~~al~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 132 EKQIRP-----TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp GGGCCS-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred HHHhhc-----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 887652 2334566666663444556999999999999876432 57788888888888888 88888888888
Q ss_pred HHcC-CCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Q 003082 425 LQAG-CEPN------SQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (850)
Q Consensus 425 ~~~g-~~p~------~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~ 463 (850)
.+.. -.|+ ..+|..+...|.+.|++++|.+.|+......
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 206 IEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp HHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 7642 1233 2567888889999999999999999887653
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.25 E-value=4.9e-10 Score=121.73 Aligned_cols=172 Identities=5% Similarity=-0.024 Sum_probs=81.7
Q ss_pred HHhhcCChHHHHHHHHHHHHhcCCh-hhHhhhhHHHHHHHHHHHhhhcCchhHHH-----------HHHHHHHHcCCCCc
Q 003082 80 KLAKDGRLEEFAMIVESVVVSEGNV-SKFASMLSLEMVASGIVKSIREGRIDCVV-----------GVLKKLNELGVAPL 147 (850)
Q Consensus 80 ~l~~~g~~~~A~~l~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~g~~~~A~-----------~~l~~~~~~~~~p~ 147 (850)
...+.+++++|..+++++...-... .....++-..++. .+.....+.++.+. +.++++... |.
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~--~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~---~~ 95 (383)
T 3ulq_A 21 MYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLME--FRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK---QA 95 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHH--HHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH---TH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH--HHHHHHHhhcCcccccccccccchhhHHHHHHhc---CC
Confidence 3578899999999999997653221 1111111011110 11111223333333 666665432 11
Q ss_pred cccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCC-CCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHH
Q 003082 148 ELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP-VKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCN 226 (850)
Q Consensus 148 ~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~ 226 (850)
.......+-.+...+..+...|++++|+..+++.+..... ++... ...++..
T Consensus 96 ~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---------------------------~a~~~~~ 148 (383)
T 3ulq_A 96 RLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIE---------------------------KAEFFFK 148 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHH---------------------------HHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHH---------------------------HHHHHHH
Confidence 1000000112222455567889999999999988764211 11100 0133444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCC-----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003082 227 FVREFGKKRDLVSALRAYDASKKHLS-----SP-NMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (850)
Q Consensus 227 li~~~~~~g~~~~A~~~~~~m~~~g~-----~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (850)
++..|...|++++|+..|++..+... .+ ...+++.+..+|...|++++|+..|++..
T Consensus 149 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 211 (383)
T 3ulq_A 149 MSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAY 211 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 55555555555555555554433200 01 12345555555666666666666555544
No 64
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.22 E-value=2.1e-10 Score=120.13 Aligned_cols=179 Identities=12% Similarity=0.024 Sum_probs=127.7
Q ss_pred cchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCC---
Q 003082 68 SSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGV--- 144 (850)
Q Consensus 68 ~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~--- 144 (850)
......+..++..+...|++++|+..|+++++................+......+...|++++|+..|+++.+..-
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 33488999999999999999999999999988521100000111123334445567789999999999999986410
Q ss_pred CCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhC------CCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC-
Q 003082 145 APLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF------RLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV- 217 (850)
Q Consensus 145 ~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 217 (850)
.++ .+....++...+..+...|++++|+..+++.+.. +..+.....+..++..+...|++++|+.+++.+
T Consensus 104 ~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 104 GKD---HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp CTT---CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCC---ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 011 1223556667777888999999999999998765 223444556777888889999999998887653
Q ss_pred --------CCC---cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003082 218 --------PRA---DILFCNFVREFGKKRDLVSALRAYDASKK 249 (850)
Q Consensus 218 --------p~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 249 (850)
+.. ..++..++..|...|++++|...|+++.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111 24567788889999999999999888775
No 65
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.20 E-value=8.8e-10 Score=123.09 Aligned_cols=209 Identities=13% Similarity=-0.036 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCCh-HHHHHHhhh----CCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 003082 171 VEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDV-NLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRAYD 245 (850)
Q Consensus 171 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~----~p~~~~~~~~li~~~~~~g~~~~A~~~~~ 245 (850)
+++++..++...... +.....+..++..+...|++ ++|+.+|+. -|.+..++..++..|.+.|++++|+..|+
T Consensus 84 ~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555555444322 44444455555555555555 555554433 24455677778888888888888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHH
Q 003082 246 ASKKHLSSPNMYICRTIIDVCGIC---------GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQ 316 (850)
Q Consensus 246 ~m~~~g~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~ 316 (850)
+.++.. |+..++..+..+|... |++++|+..|++..+.
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------------------------------- 208 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM------------------------------- 208 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH-------------------------------
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh-------------------------------
Confidence 887753 5567777777777777 6677776666665532
Q ss_pred HcCCCCCHHHHHHHHHHHHHc--------CChHHHHHHHHHHHHhhhcCCccc----CHhHHHHHHHHHHhcCCHHHHHH
Q 003082 317 KLGVMADMASYNILLKACCLA--------GNTVLAQEIYGEVKHLEAKGVLKL----DVFTYSTIVKVFADAKWWQMALK 384 (850)
Q Consensus 317 ~~g~~pd~~t~~~Ll~~~~~~--------g~~~~A~~i~~~m~~~~~~g~~~~----d~~ty~~li~~~~~~g~~~~A~~ 384 (850)
. +.+...|..+..+|... |++++|.+.|++..+. .| +...|..+...|...|++++|..
T Consensus 209 --~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~~lg~~~~~~g~~~~A~~ 279 (474)
T 4abn_A 209 --D-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV------DRKASSNPDLHLNRATLHKYEESYGEALE 279 (474)
T ss_dssp --C-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH------CGGGGGCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --C-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh------CCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 1 33567777888888887 8899999999998874 34 67788889999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003082 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424 (850)
Q Consensus 385 l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m 424 (850)
.|++..+.... +...+..+...+...|++++|...+..+
T Consensus 280 ~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 280 GFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99998876533 5677888888888888888888765443
No 66
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.19 E-value=1.8e-07 Score=107.38 Aligned_cols=75 Identities=5% Similarity=-0.094 Sum_probs=57.1
Q ss_pred hhhccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCc---hhHHHHH
Q 003082 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGR---IDCVVGV 135 (850)
Q Consensus 59 ~l~~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~---~~~A~~~ 135 (850)
+.+++..+|.+ ...|..++..+.+.+.++.|..+|++++.. .|..+.....+ . ..-.+.|. ++.+..+
T Consensus 55 lE~~l~~np~d-~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Y---i---~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 55 LNDMIEEQPTD-IFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMR---L---SLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp HHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH---H---HHHHTC--CCCHHHHHHH
T ss_pred HHHHHHHCcCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHH---H---HHHHhhCCcchHHHHHHH
Confidence 44578889987 999999999999999999999999999998 55554443322 1 12236677 9999999
Q ss_pred HHHHHHc
Q 003082 136 LKKLNEL 142 (850)
Q Consensus 136 l~~~~~~ 142 (850)
|++++..
T Consensus 126 feRal~~ 132 (679)
T 4e6h_A 126 LARCLSK 132 (679)
T ss_dssp HHHHTCS
T ss_pred HHHHHHh
Confidence 9999953
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.19 E-value=4.6e-10 Score=107.70 Aligned_cols=166 Identities=10% Similarity=0.018 Sum_probs=111.3
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
..+|..++..+...|++++|+..|+++++. +|...... ......+...|++++|+..+.++... .|+.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~------~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~-- 72 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETL------LKLGKTYMDIGLPNDAIESLKKFVVL--DTTS-- 72 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHH------HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCC--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHH------HHHHHHHHHCCCHHHHHHHHHHHHhc--Cchh--
Confidence 678889999999999999999999999988 56543332 22334556889999999999988844 4543
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~ 230 (850)
...+...+..+...+++++|...+++..... |+.. .++..++..
T Consensus 73 ----~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~--~~~~------------------------------~~~~~lg~~ 116 (184)
T 3vtx_A 73 ----AEAYYILGSANFMIDEKQAAIDALQRAIALN--TVYA------------------------------DAYYKLGLV 116 (184)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH------------------------------HHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccch------------------------------HHHHHHHHH
Confidence 3344445555667788888888888776654 4443 444555566
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
|.+.|++++|++.|++.++..+ .+..+|..+..+|.+.|++++|++.|++..+.
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 117 YDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 6666666666666666655421 34555666666666666666666666666543
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.18 E-value=6.9e-10 Score=116.18 Aligned_cols=240 Identities=10% Similarity=0.005 Sum_probs=153.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCC
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKH-------LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ------NVT 288 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~ 288 (850)
.++..++..|...|++++|+.+|+++.+. .......++..+...|...|++++|...|++..+. +-.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 66778899999999999999999988773 22235667899999999999999999999988754 222
Q ss_pred cC-HHHHHHHHHh--hcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcC-
Q 003082 289 LN-IYVFNSLMNV--NAHDLKFTLEVYKNMQKL------GVMA-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG- 357 (850)
Q Consensus 289 pd-~~t~~~ll~~--~~~~~~~a~~l~~~m~~~------g~~p-d~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g- 357 (850)
|+ ..++..+-.. ..|++++|.+.|++..+. +-.| ....+..+...+...|++++|.+.|+++.+.....
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 22 3344444443 346888888888887664 2222 34567777888888888888888888887753221
Q ss_pred -C-cccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHH-------HHHHHHHHHHHcCCHHHHHHHH
Q 003082 358 -V-LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA-------GVTPNTI-------TWSSLINACANAGLVEQAMHLF 421 (850)
Q Consensus 358 -~-~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~~-------ty~~li~~~~~~g~~~~A~~l~ 421 (850)
. ......++..+...|...|++++|...++++.+. ...+... .+..+...+...+.+.++...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 0 1122446777778888888888888888887752 1111111 1222222333344444555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Q 003082 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (850)
Q Consensus 422 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 462 (850)
....... ..+..++..+...|.+.|++++|.+.|++....
T Consensus 268 ~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 268 KACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5554331 334567888999999999999999999987643
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.17 E-value=9.3e-10 Score=105.52 Aligned_cols=165 Identities=10% Similarity=-0.019 Sum_probs=112.1
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHHHH
Q 003082 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFG 232 (850)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~p~~~~~~~~li~~~~ 232 (850)
++.+++..+...|++++|+..|++.++.. |+....+..++..+...|++++|+..+.. .|....++..+...+.
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 33444444445555555555555554443 44455555555555555555555554433 2455567778888999
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh--hcCChHHHHH
Q 003082 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310 (850)
Q Consensus 233 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~--~~~~~~~a~~ 310 (850)
..++++.|...+....+.. +.+...+..+..+|.+.|++++|++.|++..+.. +-+..+|..+-.+ ..|++++|++
T Consensus 85 ~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999988753 2467889999999999999999999999998763 2244555555444 4689999999
Q ss_pred HHHHHHHcCCCCCHHHH
Q 003082 311 VYKNMQKLGVMADMASY 327 (850)
Q Consensus 311 l~~~m~~~g~~pd~~t~ 327 (850)
.|++.++. .|+...|
T Consensus 163 ~~~~al~~--~p~~a~~ 177 (184)
T 3vtx_A 163 YFKKALEK--EEKKAKY 177 (184)
T ss_dssp HHHHHHHT--THHHHHH
T ss_pred HHHHHHhC--CccCHHH
Confidence 99999875 3544333
No 70
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.17 E-value=3.4e-09 Score=114.77 Aligned_cols=330 Identities=10% Similarity=-0.005 Sum_probs=155.5
Q ss_pred hhHHHHHHHHH--hhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHH---------HHHHHH
Q 003082 71 NDYYADMASKL--AKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVV---------GVLKKL 139 (850)
Q Consensus 71 ~~~~~~l~~~l--~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~---------~~l~~~ 139 (850)
..+-..+-+.| ...+++++|..+++++............++....+.. ++.....+.++.+. +.++.+
T Consensus 10 ~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~-~r~~~~~~~~~~~~~~~~~~~~~~~l~~i 88 (378)
T 3q15_A 10 SRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMC-FRHQLMLDYLEPGKTYGNRPTVTELLETI 88 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHH-HHHHHHHHTCCC--------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH-HHHHHHHhhcCcccccccccchHHHHHHH
Confidence 34444455555 8889999999999998765322111111111111100 01111112222222 555555
Q ss_pred HHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCC
Q 003082 140 NELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR 219 (850)
Q Consensus 140 ~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~ 219 (850)
.......+. ...+-.+...+..+...|++++|+..+++.........+. . .
T Consensus 89 ~~~~~~~~~---~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~-------------~----------- 139 (378)
T 3q15_A 89 ETPQKKLTG---LLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDD--I-------------E----------- 139 (378)
T ss_dssp HGGGHHHHH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH--H-------------H-----------
T ss_pred hccCCCCcc---HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCCh--H-------------H-----------
Confidence 422111111 1111123334455667888899988888876542111110 0 0
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHhCC----C-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHH
Q 003082 220 ADILFCNFVREFGKKRDLVSALRAYDASKKHL----S-SP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV 293 (850)
Q Consensus 220 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t 293 (850)
...++..++..|...|+++.|+..|++..+.. . .+ ...+++.+..+|...|++++|.+.|++..+.
T Consensus 140 ~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~-------- 211 (378)
T 3q15_A 140 KAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALEL-------- 211 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--------
Confidence 01345556666666666666666666554321 0 11 2345666666777777777777777665421
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHH
Q 003082 294 FNSLMNVNAHDLKFTLEVYKNMQKLGVM-ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372 (850)
Q Consensus 294 ~~~ll~~~~~~~~~a~~l~~~m~~~g~~-pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~ 372 (850)
.... +-. ....+++.+...|...|++++|.+.|++..........+....++..+...
T Consensus 212 ------------------~~~~---~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 212 ------------------AMDI---QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp ------------------HHHT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred ------------------HHHc---CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 1110 000 112344445555555555555555555544432211122224455555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 003082 373 FADAKWWQMALKVKEDMLSAG----VTPNTITWSSLINACANAGL---VEQAMHLFEEMLQAGCEPN-SQCCNILLQACV 444 (850)
Q Consensus 373 ~~~~g~~~~A~~l~~~m~~~g----~~p~~~ty~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~-~~~~~~ll~~~~ 444 (850)
|.+.|++++|...+++..+.. -......+..+...+...++ +++|+..+++ .+..++ ...+..+...|.
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHH
Confidence 555555555555555554321 11112233444444444455 4444444443 111222 123445556666
Q ss_pred HhCCHHHHHHHHHHHhhc
Q 003082 445 EACQFDRAFRLFRSWTLS 462 (850)
Q Consensus 445 ~~g~~~~A~~l~~~m~~~ 462 (850)
+.|++++|.+.|+.....
T Consensus 348 ~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 666666666666655443
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.16 E-value=8.2e-09 Score=108.22 Aligned_cols=222 Identities=14% Similarity=0.083 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCh-------HHHHHHH
Q 003082 172 EMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDL-------VSALRAY 244 (850)
Q Consensus 172 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~-------~~A~~~~ 244 (850)
++|+..|++.+... |..+..|...+..+...+ ..+.+.|++ ++|+.+|
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~-----------------------~~l~~~g~~~~~~~~~~~A~~~~ 87 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSS-----------------------KLLAEKGDMNNAKLFSDEAANIY 87 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHH-----------------------HHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhc-----------------------hhhhhccchhhcccchHHHHHHH
Confidence 57778888877654 666655655554443210 001234554 6777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH--HHHHHHHHhh--cCChHHHHHHHHHHHHcCC
Q 003082 245 DASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI--YVFNSLMNVN--AHDLKFTLEVYKNMQKLGV 320 (850)
Q Consensus 245 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~~~--~~~~~~a~~l~~~m~~~g~ 320 (850)
++.++.-.+.+...|..++..+.+.|++++|..+|++..+. .|+. ..|..+.... .|++++|..+|++..+.+
T Consensus 88 ~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~- 164 (308)
T 2ond_A 88 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA- 164 (308)
T ss_dssp HHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 77766212234556777777777777777777777776653 2221 1222222221 123333333333333322
Q ss_pred CCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--
Q 003082 321 MADMASYNILLKACC-LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG-VTP-- 396 (850)
Q Consensus 321 ~pd~~t~~~Ll~~~~-~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p-- 396 (850)
+.+...|........ ..|+.++|..+|+...+. .+-+...|..++..+.+.|++++|..+|++..... +.|
T Consensus 165 p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~ 239 (308)
T 2ond_A 165 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-----YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 239 (308)
T ss_dssp TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHH
Confidence 112222222211111 135555555555555442 12234445555555555555555555555555532 222
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 397 NTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (850)
Q Consensus 397 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 426 (850)
....|..++....+.|+.+.|..+++++.+
T Consensus 240 ~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 240 SGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 234455555555555555555555555554
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.15 E-value=3.8e-09 Score=114.65 Aligned_cols=302 Identities=10% Similarity=0.067 Sum_probs=189.8
Q ss_pred HHhcCChHHHHHHHHHHHhCC--C--CCCHHHHHHHHHHH--HhcCCHHHHH-----------HHHHHHHhCCCCcCHH-
Q 003082 231 FGKKRDLVSALRAYDASKKHL--S--SPNMYICRTIIDVC--GICGDYMKSR-----------AIYEDLRSQNVTLNIY- 292 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~g--~--~p~~~~~~~li~~~--~~~g~~~~A~-----------~~~~~m~~~g~~pd~~- 292 (850)
+.+.+++++|..+++++.+.. . .++...|-.++..- ...+.++.+. +.++.+.......+..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 345778888888887765531 1 23344444444321 1123333344 5555554321111110
Q ss_pred H-H----HHHHHhhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCc--c
Q 003082 293 V-F----NSLMNVNAHDLKFTLEVYKNMQKL----GVMA-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL--K 360 (850)
Q Consensus 293 t-~----~~ll~~~~~~~~~a~~l~~~m~~~----g~~p-d~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~--~ 360 (850)
. | ...+....|++++|++.|++..+. +-.+ ...++..+...|...|++++|...+.+..+......- .
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 0 1 122223457888888888887653 1111 2457888888999999999999999888875433210 1
Q ss_pred cCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-C
Q 003082 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-PN----TITWSSLINACANAGLVEQAMHLFEEMLQA----GC-E 430 (850)
Q Consensus 361 ~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~ 430 (850)
....+++.+...|...|++++|...|++..+.... ++ ..++..+...|...|++++|...|++..+. +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 12457788888899999999999999887643111 11 247888888999999999999999988762 22 3
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccC
Q 003082 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS 510 (850)
Q Consensus 431 p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (850)
....++..+...|.+.|++++|.+.+++....
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------------------------------------------ 293 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY------------------------------------------------ 293 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------------------------------------------------
Confidence 34567888888999999999999988765422
Q ss_pred CCcCHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHCCCCCC-HHHH
Q 003082 511 FKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGN---VEGALQILKIMREDGMSPD-VVAY 586 (850)
Q Consensus 511 ~~p~~~t~~~li~~~~~~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~---~~~A~~l~~~m~~~g~~pd-~~ty 586 (850)
.... +-......+..+...|...|+ +++|..++++. +..|+ ...+
T Consensus 294 -------------------------~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~ 342 (383)
T 3ulq_A 294 -------------------------SQKA---GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFA 342 (383)
T ss_dssp -------------------------HHHH---TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred -------------------------HHHc---CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHH
Confidence 1110 001112235567777778887 66666666655 22333 3456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 587 TTAIKVCVRSKRLKQAFSLFEEMKH 611 (850)
Q Consensus 587 ~~li~~~~~~g~~~~A~~l~~~m~~ 611 (850)
..+...|...|++++|.+.|++..+
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7788888888888888888887764
No 73
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.12 E-value=1.7e-08 Score=109.02 Aligned_cols=290 Identities=13% Similarity=0.000 Sum_probs=153.7
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
.......+..+...|++++|+..+++.+......... .....+......+...|++++|...++++.+. .|..-.
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~ 88 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFY---SRIVATSVLGEVLHCKGELTRSLALMQQTEQM--ARQHDV 88 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHH---HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchh---HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--HHhcCc
Confidence 3445556677788999999999999998864221111 11122333334566889999999999998854 221111
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~ 230 (850)
......++...+..+...|++++|+..+++.+.......... .|....++..+...
T Consensus 89 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~------------------------~~~~~~~~~~la~~ 144 (373)
T 1hz4_A 89 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ------------------------LPMHEFLVRIRAQL 144 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT------------------------STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc------------------------CcHHHHHHHHHHHH
Confidence 111233445566677789999999999988765321000000 00011345566777
Q ss_pred HHhcCChHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC-HHHHHH-----HH--
Q 003082 231 FGKKRDLVSALRAYDASKKHLSS----PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-IYVFNS-----LM-- 298 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~-----ll-- 298 (850)
|...|++++|...+++....... ....++..+...+...|++++|...+++.....-.++ ...+.. ..
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 224 (373)
T 1hz4_A 145 LWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIY 224 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHH
Confidence 77778888888877776653221 1234567777777788888888888777654211110 001111 11
Q ss_pred HhhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCH-hHHHHHHHHHH
Q 003082 299 NVNAHDLKFTLEVYKNMQKLGVMA---DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-FTYSTIVKVFA 374 (850)
Q Consensus 299 ~~~~~~~~~a~~l~~~m~~~g~~p---d~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~-~ty~~li~~~~ 374 (850)
....|+.+.|...+++.......+ ....+..+...+...|++++|...++.........+..++. ..+..+...+.
T Consensus 225 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~ 304 (373)
T 1hz4_A 225 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 304 (373)
T ss_dssp HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH
Confidence 112345555555554443322111 01234445555556666666666665554432111111111 13333334444
Q ss_pred hcCCHHHHHHHHHHH
Q 003082 375 DAKWWQMALKVKEDM 389 (850)
Q Consensus 375 ~~g~~~~A~~l~~~m 389 (850)
..|+.++|...+++.
T Consensus 305 ~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 305 QAGRKSDAQRVLLDA 319 (373)
T ss_dssp HHTCHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHH
Confidence 455555555544444
No 74
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.12 E-value=5.4e-10 Score=129.93 Aligned_cols=169 Identities=12% Similarity=0.039 Sum_probs=118.1
Q ss_pred CCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCC
Q 003082 66 DLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA 145 (850)
Q Consensus 66 ~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~ 145 (850)
.|+. ..+|..|+..|.+.|++++|+..|+++++. +|+.... +.+....+.+.|++++|++.|+++++ +.
T Consensus 5 ~P~~-a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a------~~nLg~~l~~~g~~~eA~~~~~~Al~--l~ 73 (723)
T 4gyw_A 5 CPTH-ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAA------HSNLASVLQQQGKLQEALMHYKEAIR--IS 73 (723)
T ss_dssp -CHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHH------HHHHHHHHHHTTCHHHHHHHHHHHHH--HC
T ss_pred CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHH------HHHHHHHHHHcCCHHHHHHHHHHHHH--hC
Confidence 3454 788889999999999999999999999988 5554332 22333445688999999999999884 46
Q ss_pred CccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHH
Q 003082 146 PLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFC 225 (850)
Q Consensus 146 p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~ 225 (850)
|+. .+++.+++..+.+.|++++|++.|++.++.. |+.. .+++
T Consensus 74 P~~------~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~--P~~~------------------------------~a~~ 115 (723)
T 4gyw_A 74 PTF------ADAYSNMGNTLKEMQDVQGALQCYTRAIQIN--PAFA------------------------------DAHS 115 (723)
T ss_dssp TTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH------------------------------HHHH
T ss_pred CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCH------------------------------HHHH
Confidence 765 5667777777888899999998888877654 5443 4556
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 226 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
+++..|.+.|++++|++.|++.++..+ -+...|..+..+|...|++++|.+.|++..+
T Consensus 116 ~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 116 NLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 666666666666666666666665421 2455666666666666766666666666543
No 75
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.11 E-value=1.7e-08 Score=105.69 Aligned_cols=214 Identities=14% Similarity=0.081 Sum_probs=160.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHhCCCCc-CHHHHHHHHHhh--c
Q 003082 240 ALRAYDASKKHLSSPNMYICRTIIDVCG-------ICGDY-------MKSRAIYEDLRSQNVTL-NIYVFNSLMNVN--A 302 (850)
Q Consensus 240 A~~~~~~m~~~g~~p~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~--~ 302 (850)
|+.+|++.+... +.+...|..++..+. +.|++ ++|..+|++..+. +.| +...|..+...+ .
T Consensus 35 a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 35 VMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhc
Confidence 445555555431 235556666665554 35775 9999999999873 134 455677776653 5
Q ss_pred CChHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHH-HhcCCH
Q 003082 303 HDLKFTLEVYKNMQKLGVMAD-MA-SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF-ADAKWW 379 (850)
Q Consensus 303 ~~~~~a~~l~~~m~~~g~~pd-~~-t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~-~~~g~~ 379 (850)
|+++.|.++|++..+. .|+ .. .|..+...+.+.|++++|..+|+...+. .+.+...|....... ...|++
T Consensus 113 ~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-----ARTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp TCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS-----TTCCTHHHHHHHHHHHHTSCCH
T ss_pred CCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHHcCCH
Confidence 7999999999999985 444 43 8999999999999999999999998862 123344454333332 237999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHHhCCHHHHHHHH
Q 003082 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG-CEP--NSQCCNILLQACVEACQFDRAFRLF 456 (850)
Q Consensus 380 ~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p--~~~~~~~ll~~~~~~g~~~~A~~l~ 456 (850)
++|..+|+...+.... +...|..++..+.+.|++++|..+|+...+.. +.| ....|..++..+.+.|+.+.|..++
T Consensus 186 ~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 186 SVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999876433 68899999999999999999999999999863 454 4668888999999999999999999
Q ss_pred HHHhhcc
Q 003082 457 RSWTLSK 463 (850)
Q Consensus 457 ~~m~~~~ 463 (850)
+++....
T Consensus 265 ~~a~~~~ 271 (308)
T 2ond_A 265 KRRFTAF 271 (308)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 9887643
No 76
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.09 E-value=2.5e-06 Score=97.95 Aligned_cols=441 Identities=10% Similarity=0.063 Sum_probs=283.5
Q ss_pred HHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCC---hHHHHHHHHHH
Q 003082 175 VGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRD---LVSALRAYDAS 247 (850)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~p~~~~~~~~li~~~~~~g~---~~~A~~~~~~m 247 (850)
+..|++.+... |.+...|..++..+.+.+.++.+..+|+. +|.....|..-+..-.+.|+ ++.+..+|++.
T Consensus 52 i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 52 IGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 34445554444 77888899999999888899888877655 58888888888888888888 99999999999
Q ss_pred HhCCC-CCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHh-CCC-CcC-HHHHHHHHHhhc-----------CC
Q 003082 248 KKHLS-SPNMYICRTIIDVCGICGDY--------MKSRAIYEDLRS-QNV-TLN-IYVFNSLMNVNA-----------HD 304 (850)
Q Consensus 248 ~~~g~-~p~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~pd-~~t~~~ll~~~~-----------~~ 304 (850)
+.... .|++..|..-+....+.++. +...++|+.... .|. .++ ...|...+.... ++
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~ 209 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR 209 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH
Confidence 88641 37888888877765555543 344577877654 466 554 467777776421 24
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------------cCChHHHHHHHHHHHHhhhcCC---cc--------
Q 003082 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCL-------------AGNTVLAQEIYGEVKHLEAKGV---LK-------- 360 (850)
Q Consensus 305 ~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~-------------~g~~~~A~~i~~~m~~~~~~g~---~~-------- 360 (850)
.+.+..+|++.+......-..+|......--. ..+++.|...+.++..... +. ++
T Consensus 210 ~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~-~l~r~~p~~~~~~~~ 288 (679)
T 4e6h_A 210 VQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITK-GLKRNLPITLNQATE 288 (679)
T ss_dssp HHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCCCCCCSSSTTCCT
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHH-hHhhccccccccchh
Confidence 56688888888753221112333222111111 1233445555655444321 10 00
Q ss_pred ---c-----C---HhHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHH
Q 003082 361 ---L-----D---VFTYSTIVKVFADAK-------WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAM-HLF 421 (850)
Q Consensus 361 ---~-----d---~~ty~~li~~~~~~g-------~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~-~l~ 421 (850)
| + ...|...+.---..+ ..+.+..+|++.+... .-+...|-..+..+.+.|+.++|. .+|
T Consensus 289 ~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il 367 (679)
T 4e6h_A 289 SNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYL 367 (679)
T ss_dssp TTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1 0 134555554332222 1344567888888653 337888888888888999999997 999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCc
Q 003082 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501 (850)
Q Consensus 422 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (850)
+..... ++.+...+-..+...-+.|++++|.++|+.+....... ......
T Consensus 368 ~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~------------~~~~~~----------------- 417 (679)
T 4e6h_A 368 KLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLD------------LAALME----------------- 417 (679)
T ss_dssp HHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------HHHHHH-----------------
T ss_pred HHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH------------hhhhhh-----------------
Confidence 999875 45566667778888889999999999999887531000 000000
Q ss_pred ccccccccCCCc------------CHHHHHHHHHHHh--ccHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHcC-CCH
Q 003082 502 YSSFDKRFSFKP------------TTTTYNILMKACC--TDYYRVKALMNEMRTV-G-LSPNHISWTILIDACGGS-GNV 564 (850)
Q Consensus 502 ~~~~~~~~~~~p------------~~~t~~~li~~~~--~~~~~a~~l~~~m~~~-g-~~p~~~ty~~li~~~~~~-g~~ 564 (850)
-.| ....|...+.... ++.+.|..+|....+. + ..+...+..+.+. .+. ++.
T Consensus 418 ---------~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE--~~~~~d~ 486 (679)
T 4e6h_A 418 ---------DDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIE--YHISKDT 486 (679)
T ss_dssp ---------HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHH--HTTTSCC
T ss_pred ---------ccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHH--HHhCCCH
Confidence 002 1223444444433 4678999999999875 2 2233334344443 344 559
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHH
Q 003082 565 EGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP--NLVTYITLLRARSRYGSLHEVQQCLA 642 (850)
Q Consensus 565 ~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~li~a~~~~g~~~~a~~a~~ 642 (850)
+.|..+|+...+. +.-+...|...++-....|+.+.|..+|++.....-.+ ....|...++--.+.|+.+. +..
T Consensus 487 e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~---~~~ 562 (679)
T 4e6h_A 487 KTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNS---VRT 562 (679)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHH---HHH
T ss_pred HHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHH---HHH
Confidence 9999999999875 34466777888888888999999999999998753222 45788888888889999777 556
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHH
Q 003082 643 VYQDMWKAGYKANDTYLKELIEEW 666 (850)
Q Consensus 643 l~~~M~~~g~~p~~~~~~~li~~~ 666 (850)
+.++|.+.- |+......+++-|
T Consensus 563 v~~R~~~~~--P~~~~~~~f~~ry 584 (679)
T 4e6h_A 563 LEKRFFEKF--PEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHS--TTCCHHHHHHHHT
T ss_pred HHHHHHHhC--CCCcHHHHHHHHh
Confidence 777887654 3333444455544
No 77
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.07 E-value=3.6e-09 Score=118.07 Aligned_cols=201 Identities=9% Similarity=-0.082 Sum_probs=162.2
Q ss_pred CCCcchHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHH
Q 003082 218 PRADILFCNFVREFGKKRDL-VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296 (850)
Q Consensus 218 p~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 296 (850)
|.....+..++..|...|++ ++|+..|++.++..+ .+..+|..+..+|.+.|++++|.+.|+...+.
T Consensus 99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~----------- 166 (474)
T 4abn_A 99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH----------- 166 (474)
T ss_dssp CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-----------
T ss_pred chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----------
Confidence 44557778888888888898 999998888887532 35778888888888888888888888887754
Q ss_pred HHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhhhcCCcccCHhHHH
Q 003082 297 LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA---------GNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367 (850)
Q Consensus 297 ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~---------g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~ 367 (850)
.|+...+..+...|... |++++|.+.|++..+. .+.+...|.
T Consensus 167 ------------------------~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~ 217 (474)
T 4abn_A 167 ------------------------CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM-----DVLDGRSWY 217 (474)
T ss_dssp ------------------------CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHH
T ss_pred ------------------------CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh-----CCCCHHHHH
Confidence 24455556666666666 9999999999999874 234577899
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003082 368 TIVKVFADA--------KWWQMALKVKEDMLSAGVT--PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN 437 (850)
Q Consensus 368 ~li~~~~~~--------g~~~~A~~l~~~m~~~g~~--p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ 437 (850)
.+...|... |++++|...|++..+.... -+...|..+...|...|++++|...|++..+.. +-+...+.
T Consensus 218 ~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~ 296 (474)
T 4abn_A 218 ILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQ 296 (474)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 999999998 9999999999999986431 378999999999999999999999999998864 44566788
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHh
Q 003082 438 ILLQACVEACQFDRAFRLFRSWT 460 (850)
Q Consensus 438 ~ll~~~~~~g~~~~A~~l~~~m~ 460 (850)
.+...+...|++++|.+.+..+.
T Consensus 297 ~l~~~~~~lg~~~eAi~~~~~~~ 319 (474)
T 4abn_A 297 REQQLLEFLSRLTSLLESKGKTK 319 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHhcccc
Confidence 89999999999999998665443
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.07 E-value=2.8e-08 Score=107.30 Aligned_cols=272 Identities=11% Similarity=-0.024 Sum_probs=160.5
Q ss_pred HHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHH
Q 003082 162 CQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSAL 241 (850)
Q Consensus 162 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~ 241 (850)
+..+...|++++|...+++.+... +.+.. .. . ..+++.+...|...|++++|.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~--~~~~~-~~-~-----------------------~~~~~~l~~~~~~~g~~~~A~ 73 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEEL--PPGWF-YS-R-----------------------IVATSVLGEVLHCKGELTRSL 73 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTC--CTTCH-HH-H-----------------------HHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcC--CCCch-hH-H-----------------------HHHHHHHHHHHHhcCcHHHHH
Confidence 444557899999999999887654 22211 00 0 023334445555555555555
Q ss_pred HHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--cCH-HHHHHHHH--hhcCChHH
Q 003082 242 RAYDASKKHLSS-PN----MYICRTIIDVCGICGDYMKSRAIYEDLRSQ----NVT--LNI-YVFNSLMN--VNAHDLKF 307 (850)
Q Consensus 242 ~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--pd~-~t~~~ll~--~~~~~~~~ 307 (850)
..+++....... .+ ..++..+...+...|++++|...+++..+. +.. |.. ..+..+-. ...|++++
T Consensus 74 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 153 (373)
T 1hz4_A 74 ALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE 153 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHH
Confidence 555554432100 11 122444555555566666666655554431 111 111 11221211 23356666
Q ss_pred HHHHHHHHHHcCC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHH----HHHHHHHhcCCH
Q 003082 308 TLEVYKNMQKLGV----MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS----TIVKVFADAKWW 379 (850)
Q Consensus 308 a~~l~~~m~~~g~----~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~----~li~~~~~~g~~ 379 (850)
|...+++.....- .....++..+...+...|++++|...+++.......... + ..... ..+..+...|++
T Consensus 154 A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~g~~ 231 (373)
T 1hz4_A 154 AEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKY-H-SDWISNANKVRVIYWQMTGDK 231 (373)
T ss_dssp HHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCC-C-HHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCc-c-hhHHHHHHHHHHHHHHHCCCH
Confidence 6666555544221 112356778888899999999999999988765322111 1 11111 233447789999
Q ss_pred HHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHHhCCHHH
Q 003082 380 QMALKVKEDMLSAGVTP---NTITWSSLINACANAGLVEQAMHLFEEMLQA----GCEPNS-QCCNILLQACVEACQFDR 451 (850)
Q Consensus 380 ~~A~~l~~~m~~~g~~p---~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~~~~~ll~~~~~~g~~~~ 451 (850)
++|...+++.......+ ....+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++
T Consensus 232 ~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 311 (373)
T 1hz4_A 232 AAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSD 311 (373)
T ss_dssp HHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHH
Confidence 99999998876543221 1335677888999999999999999987653 222222 256667788889999999
Q ss_pred HHHHHHHHhhc
Q 003082 452 AFRLFRSWTLS 462 (850)
Q Consensus 452 A~~l~~~m~~~ 462 (850)
|...+++....
T Consensus 312 A~~~l~~al~~ 322 (373)
T 1hz4_A 312 AQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887654
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.03 E-value=2.4e-09 Score=124.55 Aligned_cols=152 Identities=13% Similarity=0.046 Sum_probs=100.9
Q ss_pred HHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCC
Q 003082 161 ECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRD 236 (850)
Q Consensus 161 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~p~~~~~~~~li~~~~~~g~ 236 (850)
++..+.++|++++|++.|++.++.. |+....++.++.+|.+.|++++|+..|++ -|....+|++++..|.+.|+
T Consensus 15 LG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~ 92 (723)
T 4gyw_A 15 LANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 92 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 3333334444444444444444332 33344444444444444444444444333 24555788899999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC-HHHHHHHHHh--hcCChHHHHHHHH
Q 003082 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-IYVFNSLMNV--NAHDLKFTLEVYK 313 (850)
Q Consensus 237 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~--~~~~~~~a~~l~~ 313 (850)
+++|++.|++.++... -+..+|+.+..+|.+.|++++|++.|++..+. .|+ ...+..+..+ ..+++++|.+.++
T Consensus 93 ~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A~~~~~ 169 (723)
T 4gyw_A 93 VQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDYDERMK 169 (723)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHHHHHHH
Confidence 9999999999988532 36789999999999999999999999999876 443 5566666555 3478888877777
Q ss_pred HHHH
Q 003082 314 NMQK 317 (850)
Q Consensus 314 ~m~~ 317 (850)
+..+
T Consensus 170 kal~ 173 (723)
T 4gyw_A 170 KLVS 173 (723)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.98 E-value=1.7e-08 Score=109.19 Aligned_cols=182 Identities=8% Similarity=-0.107 Sum_probs=127.0
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHhcCC-hhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccc
Q 003082 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGN-VSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFD 151 (850)
Q Consensus 73 ~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~ 151 (850)
++-..+..+...|++++|+..|+++++.... ++. ......+..+...+...|++++|+..++++.+..-..... .
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-~ 178 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDD---IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY-S 178 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC-H
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCCh---HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc-h
Confidence 4455677778999999999999999876321 111 1123344455556779999999999999998642111110 1
Q ss_pred hhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHH
Q 003082 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREF 231 (850)
Q Consensus 152 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~ 231 (850)
.....++..++..+...|++++|++.+++.+...... ++.. ....++.+++..|
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~----------------~~~~----------~~~~~~~~lg~~y 232 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI----------------QNDR----------FIAISLLNIANSY 232 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----------------TCHH----------HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc----------------CCHH----------HHHHHHHHHHHHH
Confidence 1234556667777888999999999988776532100 0000 0015677899999
Q ss_pred HhcCChHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 232 GKKRDLVSALRAYDASKK-----HLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 232 ~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
...|++++|+..|++..+ ... ....++..+..+|.+.|++++|...+++..+.
T Consensus 233 ~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 233 DRSGDDQMAVEHFQKAAKVSREKVPD-LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHhhCCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999998876 322 34678889999999999999999999987753
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.97 E-value=4.4e-09 Score=108.16 Aligned_cols=164 Identities=10% Similarity=-0.034 Sum_probs=111.5
Q ss_pred hcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCC---CCccccchhhhHHHH
Q 003082 83 KDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGV---APLELFDGSGFKLLK 159 (850)
Q Consensus 83 ~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~---~p~~~~~~~~~~~l~ 159 (850)
..|++++|+.+|+++++.-..............+......+...|++++|+..|+++.+... .++ .+....++.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~ 89 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD---HPAVAATLN 89 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT---CHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc---chHHHHHHH
Confidence 45777888888887776431100000111133344455567799999999999999986510 011 123355677
Q ss_pred HHHHhhhhcCcHHHHHHHHHHHHhC------CCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC---------CCC---c
Q 003082 160 NECQRLLDSGEVEMFVGLMEVLEEF------RLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV---------PRA---D 221 (850)
Q Consensus 160 ~~~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---------p~~---~ 221 (850)
.++..+...|++++|+..+++.+.. ...|.....+..++..+...|++++|+.+++.+ +.. .
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 7788888999999999999998765 112445566777888888888988888877553 111 2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKK 249 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 249 (850)
.++..++..|.+.|++++|+..|++..+
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5667788888888888888888887765
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.96 E-value=6.6e-08 Score=92.00 Aligned_cols=163 Identities=9% Similarity=-0.009 Sum_probs=90.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhc
Q 003082 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA 302 (850)
Q Consensus 223 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~ 302 (850)
.+..++..+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+.+.+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------------- 72 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA---------------- 72 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----------------
Confidence 44556666666677777777776665532 2345566666666666666666666666554321
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHH
Q 003082 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (850)
Q Consensus 303 ~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A 382 (850)
+.+...+..+...+...|++++|.+.|+.+.+. .+.+...+..+...+...|++++|
T Consensus 73 ------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A 129 (186)
T 3as5_A 73 ------------------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA-----NPINFNVRFRLGVALDNLGRFDEA 129 (186)
T ss_dssp ------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ------------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CcHhHHHHHHHHHHHHHcCcHHHH
Confidence 223445555556666666666666666665542 123344455555555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (850)
Q Consensus 383 ~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 426 (850)
...+++..+... .+...+..+...+...|++++|...+++..+
T Consensus 130 ~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 130 IDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555554321 2344555555555555555555555555443
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.94 E-value=2e-08 Score=103.15 Aligned_cols=222 Identities=11% Similarity=0.035 Sum_probs=125.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCcC-HHHHHHHHHh--hcCChHHHH
Q 003082 239 SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ------NVTLN-IYVFNSLMNV--NAHDLKFTL 309 (850)
Q Consensus 239 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~pd-~~t~~~ll~~--~~~~~~~a~ 309 (850)
+|++++..+.....+....++..+...|...|++++|+..|++..+. +-.|+ ..++..+-.+ ..|++++|.
T Consensus 26 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 105 (283)
T 3edt_B 26 QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 105 (283)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHH
Confidence 34445544443222235668899999999999999999999987753 11222 2333333333 346777777
Q ss_pred HHHHHHHHcC-----C--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcC--Cccc-CHhHHHHHHHHHHhcCCH
Q 003082 310 EVYKNMQKLG-----V--MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG--VLKL-DVFTYSTIVKVFADAKWW 379 (850)
Q Consensus 310 ~l~~~m~~~g-----~--~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g--~~~~-d~~ty~~li~~~~~~g~~ 379 (850)
+.|.+..... . +....++..+...|...|++++|...|++..+..... .-.| ...++..+...|...|++
T Consensus 106 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 185 (283)
T 3edt_B 106 PLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY 185 (283)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 7777765531 1 1224566667777777777777777777776642110 0012 244566677777777777
Q ss_pred HHHHHHHHHHHHC-------CCCCC-HHHHHHHHHHHHHcCC------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003082 380 QMALKVKEDMLSA-------GVTPN-TITWSSLINACANAGL------VEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (850)
Q Consensus 380 ~~A~~l~~~m~~~-------g~~p~-~~ty~~li~~~~~~g~------~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~ 445 (850)
++|...+++..+. ...+. ...|..+...+...+. +..+...++.... .......++..+...|.+
T Consensus 186 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~ 264 (283)
T 3edt_B 186 QDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYRR 264 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHH
Confidence 7777777776642 11112 1222222222222222 2222222211110 112233567888999999
Q ss_pred hCCHHHHHHHHHHHhh
Q 003082 446 ACQFDRAFRLFRSWTL 461 (850)
Q Consensus 446 ~g~~~~A~~l~~~m~~ 461 (850)
.|++++|...|++..+
T Consensus 265 ~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 265 QGKLEAAHTLEDCASR 280 (283)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999988754
No 84
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.93 E-value=2.6e-08 Score=94.93 Aligned_cols=154 Identities=11% Similarity=0.055 Sum_probs=115.0
Q ss_pred HHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHH
Q 003082 120 IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ 199 (850)
Q Consensus 120 ~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (850)
...+...|++++|+..|+++. ...|+. ...+...+..+...|++++|+..++++.+.. |+....+..++.
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~--~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~ 84 (186)
T 3as5_A 15 GISHAKAGRYSQAVMLLEQVY--DADAFD------VDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHTCHHHHHHHHTTTC--CTTSCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHH--HhCccC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Confidence 334568899999999999888 445543 3445556666778899999999999988764 666667777777
Q ss_pred HHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003082 200 LCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275 (850)
Q Consensus 200 ~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 275 (850)
.+...|++++|+.+++.+ |.+..++..++..|...|++++|...|+.+.+.. +.+..++..+...+...|++++|
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 888888888888777553 5666677777888888888888888888777653 24566777777888888888888
Q ss_pred HHHHHHHHh
Q 003082 276 RAIYEDLRS 284 (850)
Q Consensus 276 ~~~~~~m~~ 284 (850)
...++...+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877654
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.93 E-value=2.2e-08 Score=103.91 Aligned_cols=188 Identities=10% Similarity=-0.043 Sum_probs=112.7
Q ss_pred CcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCC
Q 003082 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (850)
Q Consensus 67 p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p 146 (850)
++.+...|...+..+...|++++|+..|+++++....... .......+..+...+...|++++|+..|+++++. .|
T Consensus 33 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~~ 108 (292)
T 1qqe_A 33 FEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGN--EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI--FT 108 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HH
Confidence 3445788999999999999999999999999876321110 0111233445555677999999999999999854 22
Q ss_pred ccccchhhhHHHHHHHHhhhhc-CcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHH
Q 003082 147 LELFDGSGFKLLKNECQRLLDS-GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFC 225 (850)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~ 225 (850)
..-.......++.+++..+... |++++|+..|++.++.. |... +... ...++.
T Consensus 109 ~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~--~~~~--------------~~~~----------~~~~~~ 162 (292)
T 1qqe_A 109 HRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWY--AQDQ--------------SVAL----------SNKCFI 162 (292)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH--HHTT--------------CHHH----------HHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH--HhCC--------------ChHH----------HHHHHH
Confidence 2111112234566667777775 88888888888876542 1110 0000 012344
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNM------YICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 226 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
.++..|.+.|++++|+..|++..+....... ..|..+..++...|++++|...|++..+
T Consensus 163 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5566666666666666666665554322111 1345555555666666666666665543
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.88 E-value=2.7e-08 Score=101.35 Aligned_cols=194 Identities=7% Similarity=-0.032 Sum_probs=131.7
Q ss_pred CCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCC
Q 003082 66 DLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA 145 (850)
Q Consensus 66 ~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~ 145 (850)
+|++ ...+-.++..+.+.|++++|+..|+.+++.. |..... ...+......+...|++++|+..|+++++. .
T Consensus 11 ~~~~-~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~---~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~ 82 (261)
T 3qky_A 11 RHSS-PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWA---ADAQFYLARAYYQNKEYLLAASEYERFIQI--Y 82 (261)
T ss_dssp CCSS-HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred CCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcch---HHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--C
Confidence 4444 6777788999999999999999999999884 332111 122223334566899999999999999954 5
Q ss_pred CccccchhhhHHHHHHHHhhhh--------cCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC
Q 003082 146 PLELFDGSGFKLLKNECQRLLD--------SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV 217 (850)
Q Consensus 146 p~~~~~~~~~~~l~~~~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 217 (850)
|+.. ....++...+..+.. .|++++|+..|++++... |++..............+..
T Consensus 83 p~~~---~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~---------- 147 (261)
T 3qky_A 83 QIDP---RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL---------- 147 (261)
T ss_dssp TTCT---THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH----------
T ss_pred CCCc---hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH----------
Confidence 6432 223456666677777 999999999999998765 66554443221111100000
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhC
Q 003082 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGIC----------GDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 218 p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~ 285 (850)
...+..++..|.+.|++++|+..|+.+++..+.. ....+..+..+|... |++++|...|+.+.+.
T Consensus 148 ---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 148 ---ARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 1224567788888888888888888887653321 245677777777765 7888888888888765
No 87
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.86 E-value=6.5e-08 Score=96.16 Aligned_cols=194 Identities=5% Similarity=-0.146 Sum_probs=138.1
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
+..+...+..+...|++++|+..|+.+++..+.++ .. .+......+...|++++|+..|+++. ...|+.
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~-~~------~~~~~~~~~~~~~~~~~A~~~~~~al--~~~p~~-- 75 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQD-SV------TAYNCGVCADNIKKYKEAADYFDIAI--KKNYNL-- 75 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCC-HH------HHHHHHHHHHHTTCHHHHHHHHHHHH--HTTCSH--
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCC-cH------HHHHHHHHHHHhhcHHHHHHHHHHHH--HhCcch--
Confidence 57788899999999999999999999999853122 11 11123345668999999999999999 456764
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCc-------ccHHHHHHHHHcCCChHHHHHHhhhC----CC
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKEL-------DEEFRIVQLCVNKPDVNLAIRYACIV----PR 219 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~----p~ 219 (850)
..++...+..+...|++++|+..+++.++.. |++. ..+..++..+...|++++|+..|+.+ |.
T Consensus 76 ----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 76 ----ANAYIGKSAAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred ----HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 5567777888889999999999999998765 6665 44677788888888888888887664 44
Q ss_pred --CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH
Q 003082 220 --ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291 (850)
Q Consensus 220 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 291 (850)
...++..+...|...| ...++.+...+. .+...|..... ...+.+++|+..|++..+. .|+.
T Consensus 150 ~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l--~p~~ 213 (228)
T 4i17_A 150 KWKTDALYSLGVLFYNNG-----ADVLRKATPLAS-SNKEKYASEKA--KADAAFKKAVDYLGEAVTL--SPNR 213 (228)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred cccHHHHHHHHHHHHHHH-----HHHHHHHHhccc-CCHHHHHHHHH--HHHHHHHHHHHHHHHHhhc--CCCC
Confidence 4456677777776554 334455544432 23444444432 3456679999999998876 4543
No 88
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.78 E-value=1.6e-07 Score=91.93 Aligned_cols=167 Identities=8% Similarity=-0.040 Sum_probs=91.4
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhH----------HHHHHHHHHHhhhcCchhHHHHHHHHHH
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLS----------LEMVASGIVKSIREGRIDCVVGVLKKLN 140 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~----------~~~~~~~~~~~~~~g~~~~A~~~l~~~~ 140 (850)
...+...+..+...|++++|+..|+++++. +|........ ..........+...|++++|+..|++++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455667788889999999999999999998 6654332111 0000012234456677777777777776
Q ss_pred HcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCC--hHHHHHHhhhCC
Q 003082 141 ELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPD--VNLAIRYACIVP 218 (850)
Q Consensus 141 ~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~p 218 (850)
+ +.|+. ..++...+..+...|++++|+..|++.++.. |++...+..++..+...|. ...+...+....
T Consensus 82 ~--~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~ 151 (208)
T 3urz_A 82 Q--KAPNN------VDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS 151 (208)
T ss_dssp H--HCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred H--HCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 3 35544 4455555566666677777777777766654 5555555555555433322 222333333321
Q ss_pred CCc---chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003082 219 RAD---ILFCNFVREFGKKRDLVSALRAYDASKK 249 (850)
Q Consensus 219 ~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 249 (850)
... ..+..+..++...|++++|+..|++.++
T Consensus 152 ~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 152 SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 111 1233334444444555555555555444
No 89
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.75 E-value=4.9e-07 Score=89.60 Aligned_cols=191 Identities=7% Similarity=-0.039 Sum_probs=129.4
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+-.++..+...|++++|+..|+.+++.. |..... ...+......+...|++++|+..|+++++. .|+...
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~---~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~ 76 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRY--PFGPYS---QQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPN 76 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTTH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCc
Confidence 4556678889999999999999999999874 332111 112223344566899999999999999954 666432
Q ss_pred chhhhHHHHHHHHhhh------------------hcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHH
Q 003082 151 DGSGFKLLKNECQRLL------------------DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIR 212 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~------------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 212 (850)
. ..++...+..+. +.|++++|+..|+++++.. |++...+........-.+..
T Consensus 77 ~---~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~----- 146 (225)
T 2yhc_A 77 I---DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRL----- 146 (225)
T ss_dssp H---HHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHH-----
T ss_pred H---HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHH-----
Confidence 1 122333333332 3678999999999988765 66655443322111000000
Q ss_pred HhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003082 213 YACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN--MYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (850)
Q Consensus 213 ~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 286 (850)
......++..|.+.|++++|+..|+.+++..+... ...+..+..+|.+.|++++|.+.++.+...+
T Consensus 147 --------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 --------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp --------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred --------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01224578889999999999999999988533211 2568889999999999999999999888764
No 90
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.73 E-value=1.2e-07 Score=92.81 Aligned_cols=151 Identities=9% Similarity=-0.072 Sum_probs=82.9
Q ss_pred HhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHH----------------HHHhhhhcCcHHHHHHHHHHHHhCC
Q 003082 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKN----------------ECQRLLDSGEVEMFVGLMEVLEEFR 185 (850)
Q Consensus 122 ~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~----------------~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (850)
.+...|++++|+..|+++++ +.|+. .+++.. .+..+...|++++|+..|++.++..
T Consensus 13 ~~~~~g~~~~A~~~~~~al~--~~p~~------~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIA--LNIDR------TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCHHH------HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHCCCHHHHHHHHHHHHH--hCCCC------hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 35588999999999999994 46654 333443 4555666777777777777766654
Q ss_pred CCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCCCHHHH
Q 003082 186 LPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRD--LVSALRAYDASKKHLSSPNMYIC 259 (850)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~ 259 (850)
|++...+..++..+...|++++|+..|+.+ |.+..++..++..|...|+ .+.+...|..... ..|....+
T Consensus 85 --p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~ 160 (208)
T 3urz_A 85 --PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYAR 160 (208)
T ss_dssp --TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHH
Confidence 555555555555555555555555555442 5555555555555544432 2333333433322 11222223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 260 RTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 260 ~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
..+..++...|++++|+..|++..+
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3333344445555555555555554
No 91
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.73 E-value=5.3e-08 Score=113.77 Aligned_cols=169 Identities=11% Similarity=-0.027 Sum_probs=128.0
Q ss_pred hhcCChHHHHHHHHHHH--------HhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchh
Q 003082 82 AKDGRLEEFAMIVESVV--------VSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGS 153 (850)
Q Consensus 82 ~~~g~~~~A~~l~~~~~--------~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~ 153 (850)
...|++++|+..|++++ +. +|..... +......+...|++++|+..|+++++ +.|+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~------~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~----- 466 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVEL------PLMEVRALLDLGDVAKATRKLDDLAE--RVGWR----- 466 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHH------HHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCC-----
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhH------HHHHHHHHHhcCCHHHHHHHHHHHhc--cCcch-----
Confidence 78899999999999998 44 4443322 22233355688999999999999995 46665
Q ss_pred hhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHH
Q 003082 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVR 229 (850)
Q Consensus 154 ~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~p~~~~~~~~li~ 229 (850)
..++...+..+...|++++|+..|++.++.. |+....+..++.++...|++++ +..|+. -|.+..++..+..
T Consensus 467 -~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~ 542 (681)
T 2pzi_A 467 -WRLVWYRAVAELLTGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLAR 542 (681)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHH
Confidence 5566777777888999999999999998876 8888888888888888888888 777665 3777788888888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 003082 230 EFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGD 271 (850)
Q Consensus 230 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~ 271 (850)
+|.+.|++++|++.|++..+. .| +...+..+..++...++
T Consensus 543 ~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 543 ARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 899999999999888887764 34 35567777777655444
No 92
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.72 E-value=1.1e-06 Score=87.16 Aligned_cols=193 Identities=10% Similarity=-0.038 Sum_probs=108.6
Q ss_pred ccHHHHHHHHHcCCChHHHHHHhhhC----C-CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003082 192 DEEFRIVQLCVNKPDVNLAIRYACIV----P-RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVC 266 (850)
Q Consensus 192 ~~~~~l~~~~~~~~~~~~A~~~~~~~----p-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 266 (850)
..+...+..+...|++++|+..|..+ | .+..++..++..|...|++++|+..|+...+..+ .+..+|..+..+|
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 86 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHHHHH
Confidence 44555555555555555555555432 3 3444444555555555555555555555555321 2344455555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCcCHH-HHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 003082 267 GICGDYMKSRAIYEDLRSQNVTLNIY-VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345 (850)
Q Consensus 267 ~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~ 345 (850)
...|++++|+..|++..+. .|+.. .+..+ ...|..+-..+...|++++|.+
T Consensus 87 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~--------------------------~~~~~~~g~~~~~~~~~~~A~~ 138 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKA--VPGNATIEKLY--------------------------AIYYLKEGQKFQQAGNIEKAEE 138 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHH--------------------------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHH--CCCcHHHHHHH--------------------------HHHHHHHhHHHHHhccHHHHHH
Confidence 5555555555555555432 11111 00000 0356677777888899999999
Q ss_pred HHHHHHHhhhcCCcccC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003082 346 IYGEVKHLEAKGVLKLD---VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422 (850)
Q Consensus 346 i~~~m~~~~~~g~~~~d---~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~ 422 (850)
.|++..+ ..|+ ...|..+...|...| ..+++++...+. .+...|..... ...+.+++|...|+
T Consensus 139 ~~~~al~------~~p~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~~--~~~~~~~~A~~~~~ 204 (228)
T 4i17_A 139 NYKHATD------VTSKKWKTDALYSLGVLFYNNG-----ADVLRKATPLAS-SNKEKYASEKA--KADAAFKKAVDYLG 204 (228)
T ss_dssp HHHHHTT------SSCHHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHh------cCCCcccHHHHHHHHHHHHHHH-----HHHHHHHHhccc-CCHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 9988876 3454 456666666665443 344555554432 24445544432 34566899999999
Q ss_pred HHHHc
Q 003082 423 EMLQA 427 (850)
Q Consensus 423 ~m~~~ 427 (850)
+..+.
T Consensus 205 ~a~~l 209 (228)
T 4i17_A 205 EAVTL 209 (228)
T ss_dssp HHHHH
T ss_pred HHhhc
Confidence 98876
No 93
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.68 E-value=4.3e-07 Score=91.30 Aligned_cols=209 Identities=9% Similarity=-0.082 Sum_probs=148.3
Q ss_pred HHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHH-HHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhh----
Q 003082 80 KLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVAS-GIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSG---- 154 (850)
Q Consensus 80 ~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~---- 154 (850)
.+ ..+++++|+..|.++.+. +|.....++....++- ....+...++..+++..+.+.. ++.|........
T Consensus 16 ~~-~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l--~l~p~~l~a~~~~~g~ 90 (282)
T 4f3v_A 16 SM-LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV--QISMSTLNARIAIGGL 90 (282)
T ss_dssp HH-TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT--TCCGGGGCCEEECCTT
T ss_pred cc-cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh--cCChhhhhhhhccCCc
Confidence 44 579999999999999999 6665544433210000 0112234566677888888777 666664322111
Q ss_pred -----------hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCC---
Q 003082 155 -----------FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA--- 220 (850)
Q Consensus 155 -----------~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~--- 220 (850)
-++.+..+..|...|++++|.++|+.+...+ |... ..+.++..+.+.+++++|+.+|......
T Consensus 91 y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~ 167 (282)
T 4f3v_A 91 YGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDK 167 (282)
T ss_dssp TCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCH
T ss_pred ccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCc
Confidence 2344555677888999999999999876544 6555 7778888999999999999999765322
Q ss_pred ---cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHH
Q 003082 221 ---DILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN 295 (850)
Q Consensus 221 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~ 295 (850)
..++..+..++.+.|++++|+..|++.......| ..........++.+.|+.++|..+|+++... .|+...+.
T Consensus 168 ~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~ 245 (282)
T 4f3v_A 168 FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAA 245 (282)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHH
Confidence 2467889999999999999999999988543224 3446677778889999999999999999886 45544444
Q ss_pred HHH
Q 003082 296 SLM 298 (850)
Q Consensus 296 ~ll 298 (850)
.|.
T Consensus 246 aL~ 248 (282)
T 4f3v_A 246 ALK 248 (282)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.68 E-value=4.5e-07 Score=93.96 Aligned_cols=215 Identities=10% Similarity=-0.008 Sum_probs=150.3
Q ss_pred ChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 003082 206 DVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH----LSSPN-MYICRTIIDVCGICGDYMKSRAIYE 280 (850)
Q Consensus 206 ~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~ 280 (850)
++++|...|.. .+..|...|++++|+..|.+..+. |..++ ..+|+.+..+|.+.|++++|+..|+
T Consensus 32 ~~~~A~~~~~~----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 101 (292)
T 1qqe_A 32 KFEEAADLCVQ----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLE 101 (292)
T ss_dssp HHHHHHHHHHH----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHH----------HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 36666665543 466788899999999999877653 22222 4689999999999999999999998
Q ss_pred HHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhhhcCC
Q 003082 281 DLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMA-DMASYNILLKACCLA-GNTVLAQEIYGEVKHLEAKGV 358 (850)
Q Consensus 281 ~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~p-d~~t~~~Ll~~~~~~-g~~~~A~~i~~~m~~~~~~g~ 358 (850)
+..+ ++.. .|-.. -..+++.+...|... |++++|...|++..+......
T Consensus 102 ~Al~--------------------------l~~~---~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~ 152 (292)
T 1qqe_A 102 NAIQ--------------------------IFTH---RGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ 152 (292)
T ss_dssp HHHH--------------------------HHHH---TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHH--------------------------HHHH---cCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC
Confidence 7653 2211 11000 134677888889996 999999999998887532211
Q ss_pred ccc-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003082 359 LKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT------ITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431 (850)
Q Consensus 359 ~~~-d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 431 (850)
... ...+|+.+...|...|++++|+..|++..+....... ..|..+..++...|++++|...|++..+. .|
T Consensus 153 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p 230 (292)
T 1qqe_A 153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DP 230 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CC
Confidence 000 1356888899999999999999999999886543222 15777888899999999999999998753 33
Q ss_pred CH------HHHHHHHHHHH--HhCCHHHHHHHHHHHhh
Q 003082 432 NS------QCCNILLQACV--EACQFDRAFRLFRSWTL 461 (850)
Q Consensus 432 ~~------~~~~~ll~~~~--~~g~~~~A~~l~~~m~~ 461 (850)
+. ..+..++.+|. ..+++++|...|+.+..
T Consensus 231 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 231 NFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp -------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 32 13444556664 45678888888866543
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.68 E-value=1.2e-06 Score=77.94 Aligned_cols=130 Identities=15% Similarity=0.163 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003082 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405 (850)
Q Consensus 326 t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li 405 (850)
.|..+...+...|++++|..+|+.+.+. .+.+...|..+...+...|++++|...++++...+. .+...+..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 76 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLG 76 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc-----CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHH
Confidence 4667788888889999999999888763 234567788888888889999999999998887643 3677888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Q 003082 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (850)
Q Consensus 406 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 462 (850)
..+...|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.++.+...
T Consensus 77 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 77 NAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 88999999999999999888764 446677888888899999999999998887643
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.67 E-value=7.2e-08 Score=88.73 Aligned_cols=138 Identities=6% Similarity=-0.032 Sum_probs=95.9
Q ss_pred hhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHH
Q 003082 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (850)
Q Consensus 123 ~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (850)
+...|++++|++.|+++. ...|+. ......++..|.+.|++++|++.|++.++.. |++...+..++..+.
T Consensus 7 ~~~~~~~e~ai~~~~~a~--~~~p~~------~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~ 76 (150)
T 4ga2_A 7 RRSKADVERYIASVQGST--PSPRQK------SIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYE 76 (150)
T ss_dssp CCCHHHHHHHHHHHHHHS--CSHHHH------HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHHhc--ccCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 346788888888888887 444543 2334455667778899999999888888765 777777777888888
Q ss_pred cCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003082 203 NKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRA-YDASKKHLSSPNMYICRTIIDVCGICGD 271 (850)
Q Consensus 203 ~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~g~~p~~~~~~~li~~~~~~g~ 271 (850)
..|++++|+..|+.+ |.+..++..++..|.+.|++++|... ++...+..+ -+..+|......+...|+
T Consensus 77 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 77 LEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCCC
T ss_pred HcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCc
Confidence 888888887776553 66667777777777777777665554 466665421 355666666666665553
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.65 E-value=1.4e-07 Score=97.50 Aligned_cols=165 Identities=9% Similarity=-0.079 Sum_probs=97.1
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+..++..+...|++++|+..|+++++. +|...... ......+...|++++|+..|+++.+ ..|+.
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~------~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~-- 184 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIG------LLLAETLIALNRSEDAEAVLXTIPL--QDQDT-- 184 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHH------HHHHHHHHHTTCHHHHHHHHTTSCG--GGCSH--
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHH------HHHHHHHHHCCCHHHHHHHHHhCch--hhcch--
Confidence 555666677777777777777777777776 44432221 1122344467777777777776663 34432
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~ 230 (850)
....+.....+...++.++|+..+++.+... |+ +..++..+...
T Consensus 185 ----~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~--P~------------------------------~~~~~~~la~~ 228 (287)
T 3qou_A 185 ----RYQGLVAQIELLXQAADTPEIQQLQQQVAEN--PE------------------------------DAALATQLALQ 228 (287)
T ss_dssp ----HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC--TT------------------------------CHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhhcccCccHHHHHHHHhcC--Cc------------------------------cHHHHHHHHHH
Confidence 1122223333444555566666666655543 44 44566666777
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003082 231 FGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (850)
|...|++++|+..|.++++..+.. +...+..++.+|...|+.++|...|++..
T Consensus 229 l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 229 LHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 777777777777777776653321 25567777777777777777777666544
No 98
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.64 E-value=6.2e-06 Score=84.00 Aligned_cols=177 Identities=8% Similarity=-0.007 Sum_probs=102.9
Q ss_pred HHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 210 AIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLS-SPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 210 A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
|+..++.. +++..++..++.++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44555432 33445556778888888888888888888766553 23566777888888888888888888888876
Q ss_pred CCCCc-----CHHHHHHHHHh----hcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 003082 285 QNVTL-----NIYVFNSLMNV----NAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL 353 (850)
Q Consensus 285 ~g~~p-----d~~t~~~ll~~----~~~--~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~ 353 (850)
. .| +..+...|..+ ..| +...|..+|+++... .|+..+...|+.++.+.|++++|++.++.+.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5 44 23333333332 122 666677777776543 244333344444666677777777776655432
Q ss_pred hhc--C---CcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003082 354 EAK--G---VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (850)
Q Consensus 354 ~~~--g---~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 392 (850)
.-. . .-+-|..+...+|......|+ +|.++++++.+.
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 100 0 001234444344433444454 566666666654
No 99
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.64 E-value=4.5e-07 Score=92.18 Aligned_cols=163 Identities=9% Similarity=0.012 Sum_probs=102.5
Q ss_pred HhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHH
Q 003082 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (850)
Q Consensus 122 ~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (850)
.+...|++++|+..|+++++ ..|+.. ....++..++..+...|++++|+..|++.+... |++..
T Consensus 24 ~~~~~g~~~~A~~~~~~~l~--~~p~~~---~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--p~~~~--------- 87 (261)
T 3qky_A 24 EFYNQGKYDRAIEYFKAVFT--YGRTHE---WAADAQFYLARAYYQNKEYLLAASEYERFIQIY--QIDPR--------- 87 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHGG--GCSCST---THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTT---------
T ss_pred HHHHhCCHHHHHHHHHHHHH--hCCCCc---chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC--CCCch---------
Confidence 34577888888888888874 345431 123445555666677788888888888777653 32211
Q ss_pred HcCCChHHHHHHhhhCCCCcchHHHHHHHHHh--------cCChHHHHHHHHHHHhCCCCCCHHH---------------
Q 003082 202 VNKPDVNLAIRYACIVPRADILFCNFVREFGK--------KRDLVSALRAYDASKKHLSSPNMYI--------------- 258 (850)
Q Consensus 202 ~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~~--------------- 258 (850)
...++..++..|.. .|++++|+..|+++++..+. +...
T Consensus 88 ------------------~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~ 148 (261)
T 3qky_A 88 ------------------VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLA 148 (261)
T ss_dssp ------------------HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHH
T ss_pred ------------------hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHH
Confidence 11334455555555 66666666666666654221 1122
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-c-CHHHHHHHHHhhc------------CChHHHHHHHHHHHHcC
Q 003082 259 --CRTIIDVCGICGDYMKSRAIYEDLRSQNVT-L-NIYVFNSLMNVNA------------HDLKFTLEVYKNMQKLG 319 (850)
Q Consensus 259 --~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-d~~t~~~ll~~~~------------~~~~~a~~l~~~m~~~g 319 (850)
+..+...|.+.|++++|+..|+.+.+.... + ....+..+-.++. +++++|...|+++.+..
T Consensus 149 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 149 RKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 256788899999999999999999876322 1 1233333333332 78899999999998763
No 100
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.63 E-value=4.1e-07 Score=95.04 Aligned_cols=62 Identities=10% Similarity=0.036 Sum_probs=40.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCC---C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSS---P--NMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
.++..+...|.. |++++|+..|++.++.... + ...+++.+..+|.+.|++++|+..|++..+
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345667777777 7777777777766543110 0 134677777777788888888877776553
No 101
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.62 E-value=1.7e-06 Score=76.92 Aligned_cols=129 Identities=14% Similarity=0.107 Sum_probs=74.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhc
Q 003082 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA 302 (850)
Q Consensus 223 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~ 302 (850)
++..++..|...|++++|+.+|+++.+... .+...+..+...+...|++++|...|+++.+.+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---------------- 65 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---------------- 65 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC----------------
Confidence 455666677777777777777777665432 345566666666777777777777666655321
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHH
Q 003082 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (850)
Q Consensus 303 ~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A 382 (850)
+.+...+..+...+...|++++|.+.|+.+.+. .+.+..++..+...+...|++++|
T Consensus 66 ------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A 122 (136)
T 2fo7_A 66 ------------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPRSAEAWYNLGNAYYKQGDYDEA 122 (136)
T ss_dssp ------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred ------------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHccHHHH
Confidence 123344555555566666666666666655542 122344555555555555555555
Q ss_pred HHHHHHHHH
Q 003082 383 LKVKEDMLS 391 (850)
Q Consensus 383 ~~l~~~m~~ 391 (850)
...++++..
T Consensus 123 ~~~~~~~~~ 131 (136)
T 2fo7_A 123 IEYYQKALE 131 (136)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 555555544
No 102
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.59 E-value=4.9e-07 Score=94.46 Aligned_cols=187 Identities=14% Similarity=0.057 Sum_probs=111.3
Q ss_pred CCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCC
Q 003082 66 DLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA 145 (850)
Q Consensus 66 ~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~ 145 (850)
+...+...|...+..+...|++++|+..|++++........ .......+..+...|...|++++|+..|+++++.-..
T Consensus 31 ~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~ 108 (307)
T 2ifu_A 31 DYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRS--LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVE 108 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 34445788999999999999999999999999876421111 1111334445555677889999999999998854211
Q ss_pred CccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHH
Q 003082 146 PLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFC 225 (850)
Q Consensus 146 p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~ 225 (850)
... ......++.+++..+.. |++++|+..|++.+... +.. ++...+ ..++.
T Consensus 109 ~g~--~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~--~~~--------------~~~~~~----------~~~~~ 159 (307)
T 2ifu_A 109 NGT--PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVF--ENE--------------ERLRQA----------AELIG 159 (307)
T ss_dssp TTC--HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHH--HHT--------------TCHHHH----------HHHHH
T ss_pred cCC--HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHH--HhC--------------CChhHH----------HHHHH
Confidence 111 11224556667777777 99999999988876532 110 000000 13444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003082 226 NFVREFGKKRDLVSALRAYDASKKH----LSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLR 283 (850)
Q Consensus 226 ~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (850)
.+...|.+.|++++|+..|++.++. +..++ ...+..+..++...|++++|...|++..
T Consensus 160 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 160 KASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5555666666666666666555442 11111 1244445555555566666666666655
No 103
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.58 E-value=1.1e-05 Score=82.26 Aligned_cols=146 Identities=13% Similarity=0.023 Sum_probs=110.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 003082 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387 (850)
Q Consensus 308 a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~ 387 (850)
++..|+++...+ .++..++..+..++...|++++|++++.+... .+.-.-+...+..++..+.+.|+.+.|.+.++
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~---~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~ 160 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGID---NDEAEGTTELLLLAIEVALLNNNVSTASTIFD 160 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---SSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhc---cCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 566777776655 55667777888999999999999999988754 12001356778889999999999999999999
Q ss_pred HHHHCCCCC-----CHHHHHHHHHHHHH--cC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003082 388 DMLSAGVTP-----NTITWSSLINACAN--AG--LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (850)
Q Consensus 388 ~m~~~g~~p-----~~~ty~~li~~~~~--~g--~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~ 458 (850)
.|.+. .| +..+...|..++.. .| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.
T Consensus 161 ~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 161 NYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99875 55 35666667666333 34 899999999999765 45544445555589999999999999987
Q ss_pred Hhh
Q 003082 459 WTL 461 (850)
Q Consensus 459 m~~ 461 (850)
+.+
T Consensus 237 l~~ 239 (310)
T 3mv2_B 237 LLS 239 (310)
T ss_dssp HHS
T ss_pred HHH
Confidence 654
No 104
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.57 E-value=1.9e-07 Score=109.07 Aligned_cols=165 Identities=10% Similarity=-0.063 Sum_probs=136.9
Q ss_pred hhcCchhHHHHHHHHHHHc------CCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHH
Q 003082 124 IREGRIDCVVGVLKKLNEL------GVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRI 197 (850)
Q Consensus 124 ~~~g~~~~A~~~l~~~~~~------~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 197 (850)
...|++++|++.|+++.+. ...|+. .+++...+..+...|++++|+..+++.++.. |++...++.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~l 473 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSES------VELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYR 473 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTC------SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccc------hhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHH
Confidence 5789999999999999821 234543 5667777788889999999999999998865 8888899999
Q ss_pred HHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 003082 198 VQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273 (850)
Q Consensus 198 ~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 273 (850)
+.++...|++++|+..|+.+ |.+..++..+...|.+.|++++ ++.|++.++..+ .+...|..+..+|.+.|+++
T Consensus 474 g~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~ 551 (681)
T 2pzi_A 474 AVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRV 551 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHH
Confidence 99999999999999988764 8888999999999999999999 999999988543 46788999999999999999
Q ss_pred HHHHHHHHHHhCCCCcC-HHHHHHHHHh
Q 003082 274 KSRAIYEDLRSQNVTLN-IYVFNSLMNV 300 (850)
Q Consensus 274 ~A~~~~~~m~~~g~~pd-~~t~~~ll~~ 300 (850)
+|++.|++..+. .|+ ...+..+-.+
T Consensus 552 ~A~~~~~~al~l--~P~~~~a~~~~~~~ 577 (681)
T 2pzi_A 552 GAVRTLDEVPPT--SRHFTTARLTSAVT 577 (681)
T ss_dssp HHHHHHHTSCTT--STTHHHHHHHHHHH
T ss_pred HHHHHHHhhccc--CcccHHHHHHHHHH
Confidence 999999988765 455 3344444443
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.55 E-value=5.1e-07 Score=103.40 Aligned_cols=150 Identities=11% Similarity=-0.035 Sum_probs=111.9
Q ss_pred cCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCC
Q 003082 126 EGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKP 205 (850)
Q Consensus 126 ~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (850)
.|++++|+..|+++. ...|+. ..++...+..+...|++++|++.+++.++.. |+....+..++..+...|
T Consensus 2 ~g~~~~A~~~~~~al--~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g 71 (568)
T 2vsy_A 2 TADGPRELLQLRAAV--RHRPQD------FVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQ 71 (568)
T ss_dssp ---------------------CC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHH--HhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCC
Confidence 478999999999998 556764 4566677777888999999999999998765 778888899999999999
Q ss_pred ChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHH
Q 003082 206 DVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC---GDYMKSRAI 278 (850)
Q Consensus 206 ~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~ 278 (850)
++++|+.+++.+ |.+..++..++..|.+.|++++|++.|++..+... .+...+..+..++... |++++|.+.
T Consensus 72 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~ 150 (568)
T 2vsy_A 72 RHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQ 150 (568)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 999999988764 77778899999999999999999999999888642 4677888999999999 999999999
Q ss_pred HHHHHhCC
Q 003082 279 YEDLRSQN 286 (850)
Q Consensus 279 ~~~m~~~g 286 (850)
|++..+.+
T Consensus 151 ~~~al~~~ 158 (568)
T 2vsy_A 151 VRAAVAQG 158 (568)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhcC
Confidence 99988764
No 106
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.53 E-value=1.5e-07 Score=86.65 Aligned_cols=142 Identities=11% Similarity=-0.004 Sum_probs=105.0
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhH
Q 003082 77 MASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFK 156 (850)
Q Consensus 77 l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~ 156 (850)
|+..+...|+++.|+..++..... +|....... .+ ...|...|++++|++.|+++++ +.|+. ..
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~---~l---a~~y~~~~~~~~A~~~~~~al~--~~p~~------~~ 66 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGF---YF---AKLYYEAKEYDLAKKYICTYIN--VQERD------PK 66 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHH---HH---HHHHHHTTCHHHHHHHHHHHHH--HCTTC------HH
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHH---HH---HHHHHHcCCHHHHHHHHHHHHH--hCCCC------HH
Confidence 555667778999999999988776 454433221 22 2345688999999999999994 47765 55
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHH-hhh----CCCCcchHHHHHHHH
Q 003082 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRY-ACI----VPRADILFCNFVREF 231 (850)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-~~~----~p~~~~~~~~li~~~ 231 (850)
++..++..+...|++++|+..|++.++.. |+....+..++..+.+.|++++|.+. ++. .|.+..+|......+
T Consensus 67 a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll 144 (150)
T 4ga2_A 67 AHRFLGLLYELEENTDKAVECYRRSVELN--PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLL 144 (150)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 66777777888999999999999988865 88888899999999999988766543 343 488878888777777
Q ss_pred HhcCC
Q 003082 232 GKKRD 236 (850)
Q Consensus 232 ~~~g~ 236 (850)
.+.|+
T Consensus 145 ~~~G~ 149 (150)
T 4ga2_A 145 DCEGE 149 (150)
T ss_dssp HTCCC
T ss_pred HHhCc
Confidence 77775
No 107
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.52 E-value=2.1e-05 Score=80.90 Aligned_cols=166 Identities=8% Similarity=-0.064 Sum_probs=112.9
Q ss_pred CcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCC--ChHHHHHHhhh----CCCCcchHHHHHHHH----Hhc---C
Q 003082 169 GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKP--DVNLAIRYACI----VPRADILFCNFVREF----GKK---R 235 (850)
Q Consensus 169 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~----~p~~~~~~~~li~~~----~~~---g 235 (850)
...++|+++.+.++... |+....|+.-...+...+ .+++++.+++. -|++..+|+.-...+ ... +
T Consensus 47 e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccC
Confidence 34478999999998876 888889998888888888 88988888765 378888887655444 555 7
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCcCHHHHHHHHHhh--cCC------h
Q 003082 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM--KSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHD------L 305 (850)
Q Consensus 236 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~pd~~t~~~ll~~~--~~~------~ 305 (850)
++++++.+++.+++.. +.|..+|+.-.-++.+.|+++ ++++.++.+.+... -|...|+..-.+. .+. +
T Consensus 125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhH
Confidence 8889999999888753 357778888887788888877 88888888876532 2344444332221 122 4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003082 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339 (850)
Q Consensus 306 ~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~ 339 (850)
+++++.+++++... +-|...|+.+-..+.+.|+
T Consensus 203 ~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 203 DEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCC
Confidence 45555555555443 3355555555555555554
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.52 E-value=2e-07 Score=88.37 Aligned_cols=151 Identities=13% Similarity=0.088 Sum_probs=97.9
Q ss_pred HhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHH-
Q 003082 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL- 200 (850)
Q Consensus 122 ~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~- 200 (850)
.+...|++++|+..|+++.+ ..|+. ..++...+..+...|++++|+..+++..... | +.......+..
T Consensus 15 ~~~~~g~~~~A~~~~~~al~--~~P~~------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p-~~~~~~~~~~~~ 83 (176)
T 2r5s_A 15 ELLQQGEHAQALNVIQTLSD--ELQSR------GDVKLAKADCLLETKQFELAQELLATIPLEY--Q-DNSYKSLIAKLE 83 (176)
T ss_dssp HHHHTTCHHHHHHHHHTSCH--HHHTS------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--C-CHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH--HCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--C-ChHHHHHHHHHH
Confidence 34578888888888888874 35554 4556666777778888888888888765543 3 32222222211
Q ss_pred HHcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 003082 201 CVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKS 275 (850)
Q Consensus 201 ~~~~~~~~~A~~~~~~----~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A 275 (850)
+...+....|+..++. .|.+..++..+...+...|++++|+..|+++++..+.+ +...+..+..++...|+.++|
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 1121222234444433 46677777778888888888888888888877754432 355677777778888888888
Q ss_pred HHHHHHHH
Q 003082 276 RAIYEDLR 283 (850)
Q Consensus 276 ~~~~~~m~ 283 (850)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87777654
No 109
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.51 E-value=6.3e-06 Score=85.28 Aligned_cols=180 Identities=11% Similarity=-0.007 Sum_probs=115.2
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+...+..+...|++++|+..++..++.......... ...........+...|++++|+..|+++.+.. +....
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~ 150 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQ--FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQ--LTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHH--HHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTC--CCSSC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH--hcCCc
Confidence 444556677778888888888888888776422111111 11122223344567788888888888887432 22111
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCc----chHHH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD----ILFCN 226 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~----~~~~~ 226 (850)
......++...+..|...|++++|+..+++.++.. +..+.+. .++++
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~-----------------------------~~~~~~~~~~~~~~~n 201 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQL-----------------------------EALHDNEEFDVKVRYN 201 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------------------------HHSCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----------------------------HhcCccccchHHHHHh
Confidence 11224456666777777888888888887765321 0011111 46778
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 003082 227 FVREFGKKRDLVSALRAYDASKKHL----SSP-NMYICRTIIDVCGICGDYMKS-RAIYEDLR 283 (850)
Q Consensus 227 li~~~~~~g~~~~A~~~~~~m~~~g----~~p-~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 283 (850)
++..|.+.|++++|+..|++.++.. ... -..+|..+..+|.+.|++++| ...|+...
T Consensus 202 lg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 202 HAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 8889999999999999998776531 111 256788999999999999999 77777654
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.49 E-value=4.3e-06 Score=86.22 Aligned_cols=162 Identities=7% Similarity=-0.037 Sum_probs=116.2
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHH
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVRE 230 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~ 230 (850)
.+.++..+..+...|++++|+..|++.+... |++...+..++..+...|++++|+..++.+ |............
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 4556666777778899999999999888765 777778888888888888888888888776 3222223334445
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHH
Q 003082 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE 310 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~ 310 (850)
+.+.++.++|+..|++.....+ .+...+..+..+|...|++++|+..|+++.+.. |+
T Consensus 195 l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~--p~-------------------- 251 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXD--LT-------------------- 251 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------------------
T ss_pred HHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--cc--------------------
Confidence 6677778888888888777532 467778888888888888888888888877542 11
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003082 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351 (850)
Q Consensus 311 l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~ 351 (850)
..+...+..|...+...|+.++|...|++..
T Consensus 252 ----------~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 252 ----------AADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp ----------GGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ----------cccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 0124566677777777777777777766543
No 111
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.47 E-value=1.2e-05 Score=82.67 Aligned_cols=214 Identities=8% Similarity=-0.093 Sum_probs=163.6
Q ss_pred CchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcC--cHHHHHHHHHHHHhCCCCCCCcccHHHHHHHH---
Q 003082 127 GRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSG--EVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC--- 201 (850)
Q Consensus 127 g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~--- 201 (850)
...++|++.+++++ .+.|+. +.++......+...| ++++++++++.++... |+....|+.-...+
T Consensus 47 e~s~~aL~~t~~~L--~~nP~~------~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~ 116 (306)
T 3dra_A 47 EYSERALHITELGI--NELASH------YTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQI 116 (306)
T ss_dssp CCSHHHHHHHHHHH--HHCTTC------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--HHCcHH------HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHH
Confidence 44468999999999 558876 555665566666777 9999999999999876 88889998766666
Q ss_pred -HcC---CChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003082 202 -VNK---PDVNLAIRYACIV----PRADILFCNFVREFGKKRDLV--SALRAYDASKKHLSSPNMYICRTIIDVCGICGD 271 (850)
Q Consensus 202 -~~~---~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 271 (850)
... +++++++.+++.+ |++..+|+.-.-.+.+.|+++ ++++.++.+++..+ -|..+|+....++.+.++
T Consensus 117 ~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~ 195 (306)
T 3dra_A 117 MELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKH 195 (306)
T ss_dssp HHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGG
T ss_pred HHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccc
Confidence 555 7889998877654 888899999888888899998 99999999998653 577888888777777776
Q ss_pred ------HHHHHHHHHHHHhCCCCcCHHHHHHHHHh--hcC-ChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCh
Q 003082 272 ------YMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAH-DLKFTLEVYKNMQKLG--VMADMASYNILLKACCLAGNT 340 (850)
Q Consensus 272 ------~~~A~~~~~~m~~~g~~pd~~t~~~ll~~--~~~-~~~~a~~l~~~m~~~g--~~pd~~t~~~Ll~~~~~~g~~ 340 (850)
++++++.++.+.... +-|...|+.+-.. ..+ ..+...++..++...+ -+.+...+..+.+.|++.|+.
T Consensus 196 ~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~ 274 (306)
T 3dra_A 196 LATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKY 274 (306)
T ss_dssp GCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCH
T ss_pred cchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCH
Confidence 999999999988763 2355555544433 233 3444556666654432 234678888899999999999
Q ss_pred HHHHHHHHHHHH
Q 003082 341 VLAQEIYGEVKH 352 (850)
Q Consensus 341 ~~A~~i~~~m~~ 352 (850)
++|.++++.+.+
T Consensus 275 ~~A~~~~~~l~~ 286 (306)
T 3dra_A 275 NESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998864
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.47 E-value=1.6e-06 Score=82.15 Aligned_cols=157 Identities=8% Similarity=-0.034 Sum_probs=80.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh-h
Q 003082 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-N 301 (850)
Q Consensus 223 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~-~ 301 (850)
.+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|+..|+...+.. |+...+..+... .
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 44555666666677777777776655432 1345566666666777777777777776655432 222211111000 0
Q ss_pred --cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccC---HhHHHHHHHHHHhc
Q 003082 302 --AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYSTIVKVFADA 376 (850)
Q Consensus 302 --~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d---~~ty~~li~~~~~~ 376 (850)
.+....++..|++..+.. +-+...+..+...+...|++++|...|+++.+ ..|+ ...+..+...|...
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~------~~p~~~~~~a~~~l~~~~~~~ 157 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILK------VNLGAQDGEVKKTFMDILSAL 157 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------TCTTTTTTHHHHHHHHHHHHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH------hCcccChHHHHHHHHHHHHHh
Confidence 011112344444444432 22355555555666666666666666665554 2222 33455555555555
Q ss_pred CCHHHHHHHHHHH
Q 003082 377 KWWQMALKVKEDM 389 (850)
Q Consensus 377 g~~~~A~~l~~~m 389 (850)
|+.++|...|++.
T Consensus 158 g~~~~A~~~y~~a 170 (176)
T 2r5s_A 158 GQGNAIASKYRRQ 170 (176)
T ss_dssp CSSCHHHHHHHHH
T ss_pred CCCCcHHHHHHHH
Confidence 5555555555544
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.42 E-value=1.5e-06 Score=99.46 Aligned_cols=151 Identities=7% Similarity=-0.077 Sum_probs=109.3
Q ss_pred cCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHH
Q 003082 84 DGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQ 163 (850)
Q Consensus 84 ~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~ 163 (850)
.|++++|+..|+++++. +|..... +......+...|++++|++.|+++. .+.|+. ..++..++.
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~------~~~lg~~~~~~g~~~~A~~~~~~al--~~~p~~------~~~~~~lg~ 65 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVA------WLMLADAELGMGDTTAGEMAVQRGL--ALHPGH------PEAVARLGR 65 (568)
T ss_dssp ---------------------CCHHH------HHHHHHHHHHHTCHHHHHHHHHHHH--TTSTTC------HHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHH------HHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCC------HHHHHHHHH
Confidence 47899999999999887 4443222 2223345568899999999999999 557765 556677777
Q ss_pred hhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhc---CC
Q 003082 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKK---RD 236 (850)
Q Consensus 164 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~---g~ 236 (850)
.+...|++++|++.+++.++.. |+....+..++..+...|++++|+.+++.. |.+..++..++..|... |+
T Consensus 66 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~ 143 (568)
T 2vsy_A 66 VRWTQQRHAEAAVLLQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRA 143 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc
Confidence 8889999999999999998875 778888999999999999999999988763 77778899999999999 99
Q ss_pred hHHHHHHHHHHHhCCC
Q 003082 237 LVSALRAYDASKKHLS 252 (850)
Q Consensus 237 ~~~A~~~~~~m~~~g~ 252 (850)
+++|.+.|++..+.+.
T Consensus 144 ~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 144 LDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999999988654
No 114
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.40 E-value=3e-06 Score=77.60 Aligned_cols=94 Identities=9% Similarity=0.049 Sum_probs=67.2
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHH
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVRE 230 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~ 230 (850)
.+.+...+..+.+.|++++|+..|++.+... |+++..|..++.++...|++++|+..|+.+ |.+..++..++.+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 6667777778888999999999999988765 777666666666666666666666666543 5566666666666
Q ss_pred HHhcCChHHHHHHHHHHHhC
Q 003082 231 FGKKRDLVSALRAYDASKKH 250 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~ 250 (850)
|.+.|++++|+..|+..++.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666654
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.39 E-value=6.9e-06 Score=84.96 Aligned_cols=183 Identities=11% Similarity=0.006 Sum_probs=120.2
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccc
Q 003082 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFD 151 (850)
Q Consensus 72 ~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~ 151 (850)
..+...+..+...|++++|+..++.++.......... .....+..+...+...|++++|+..|+++++....... .
T Consensus 76 ~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~--~ 151 (293)
T 3u3w_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ--QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID--V 151 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHH--HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSC--T
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHH--HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccccc--H
Confidence 3444557788899999999999999987532211111 11112222334566788999999999999964322222 1
Q ss_pred hhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCC-CCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 003082 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPV-KELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (850)
Q Consensus 152 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~ 230 (850)
.....++..++..+...|++++|+..+++.++.-... .. .. ....++++++..
T Consensus 152 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~---~~-----------------------~~~~~~~nlg~~ 205 (293)
T 3u3w_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN---EE-----------------------FDVKVRYNHAKA 205 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCC---HH-----------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc---hh-----------------------HHHHHHHHHHHH
Confidence 1223456777778888999999999998876421000 00 00 001467788888
Q ss_pred HHhcCChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 003082 231 FGKKRDLVSALRAYDASKKH----LSSPN-MYICRTIIDVCGICG-DYMKSRAIYEDLRS 284 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 284 (850)
|.+.|++++|+..+++.++. +..+. ..+|..+..+|.+.| .+++|.+.|++...
T Consensus 206 y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 206 LYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88899999998888877643 22222 567888889999999 46888888887754
No 116
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.39 E-value=1.3e-06 Score=89.93 Aligned_cols=190 Identities=7% Similarity=-0.053 Sum_probs=124.1
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+..++..+...|++++|+..|+++++. +|..... +......+...|++++|+..|++++ .+.|+.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~------~~~la~~~~~~~~~~~A~~~~~~al--~~~p~~-- 71 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVY------YTNRALCYLKMQQPEQALADCRRAL--ELDGQS-- 71 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHH------HHHHHHHHHHTTCHHHHHHHHHHHT--TSCTTC--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHH------HHHHHHHHHHhcCHHHHHHHHHHHH--HhCCCC--
Confidence 677888999999999999999999999998 4443222 2233345668999999999999999 567765
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHH---HHcCCChHHHHHHhhhCCCCcchHHHH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL---CVNKPDVNLAIRYACIVPRADILFCNF 227 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~A~~~~~~~p~~~~~~~~l 227 (850)
..++...+..+...|++++|+..|++.++.. |+....+...+.. ..+...+..... ...+.+..+...+
T Consensus 72 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~l 143 (281)
T 2c2l_A 72 ----VKAHFFLGQCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIAKKKRWNSIEE--RRIHQESELHSYL 143 (281)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHHHHHHHHHHHH--TCCCCCCHHHHHH
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHH
Confidence 4566677778889999999999999887654 4332111111111 111111211111 2344444444444
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh
Q 003082 228 VREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGIC-GDYMKSRAIYEDLRS 284 (850)
Q Consensus 228 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~ 284 (850)
...+ .|++++|++.|+...+. .| +......+...+.+. +.+++|.++|....+
T Consensus 144 ~~l~--~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 144 TRLI--AAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHH--HHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHH--HHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3332 68888888888877764 34 344444554555555 667888888887765
No 117
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.39 E-value=1.8e-05 Score=78.16 Aligned_cols=61 Identities=13% Similarity=0.151 Sum_probs=40.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003082 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPN--TITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (850)
Q Consensus 368 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 428 (850)
.+...|.+.|++++|...|+++.+...... ...+..+..++.+.|+.++|...++.+...+
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 345567777778888877777776532211 2456677777778888888888887776653
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.37 E-value=3.7e-05 Score=79.41 Aligned_cols=172 Identities=7% Similarity=-0.065 Sum_probs=114.3
Q ss_pred HHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHH
Q 003082 118 SGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRI 197 (850)
Q Consensus 118 ~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 197 (850)
..+..+...|++++|...++++.+. .+...........+...+..+...|++++|+..+++.+.......+.. . .
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~--~-~ 154 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKK--EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY--Q-N 154 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT--H-H
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhcc--ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH--H-H
Confidence 3345667899999999999999853 333211111122333455666778899999999999887542222210 0 0
Q ss_pred HHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh----C-CCCC-CHHHHHHHHHHHHhcCC
Q 003082 198 VQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKK----H-LSSP-NMYICRTIIDVCGICGD 271 (850)
Q Consensus 198 ~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~p-~~~~~~~li~~~~~~g~ 271 (850)
..+++.++..|...|++++|+..|+.+++ . +..+ ...+|..+..+|.+.|+
T Consensus 155 -----------------------~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~ 211 (293)
T 3u3w_A 155 -----------------------LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR 211 (293)
T ss_dssp -----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred -----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH
Confidence 13578888999999999999999988873 1 1222 23478999999999999
Q ss_pred HHHHHHHHHHHHhC----CCCcC-HHHHHHHHHh--hcC-ChHHHHHHHHHHHH
Q 003082 272 YMKSRAIYEDLRSQ----NVTLN-IYVFNSLMNV--NAH-DLKFTLEVYKNMQK 317 (850)
Q Consensus 272 ~~~A~~~~~~m~~~----g~~pd-~~t~~~ll~~--~~~-~~~~a~~l~~~m~~ 317 (850)
+++|+..+++..+. +..+. ..+|..+-.+ ..| +.++|.+.|++...
T Consensus 212 y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 212 YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999887642 32233 3444444433 346 46889888887754
No 119
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.37 E-value=0.00045 Score=76.75 Aligned_cols=109 Identities=10% Similarity=0.085 Sum_probs=63.5
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003082 528 DYYRVKALMNEMRTVGLSPNHISWT--ILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSL 605 (850)
Q Consensus 528 ~~~~a~~l~~~m~~~g~~p~~~ty~--~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l 605 (850)
+.+.|..+|... +. ...+..+|. +.+...+ .++.+.|..+|+...+.- .-+...|...++-..+.|+.+.|..+
T Consensus 301 ~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l 376 (493)
T 2uy1_A 301 GLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARAL 376 (493)
T ss_dssp CHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 456677777766 21 112333333 3333222 225777888888776642 12344556666666777888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 003082 606 FEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMW 648 (850)
Q Consensus 606 ~~~m~~~g~~p~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~ 648 (850)
|++.. -....|...+.--...|+.+.+++ +++++.
T Consensus 377 ~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~---v~~~~~ 411 (493)
T 2uy1_A 377 FKRLE-----KTSRMWDSMIEYEFMVGSMELFRE---LVDQKM 411 (493)
T ss_dssp HHHSC-----CBHHHHHHHHHHHHHHSCHHHHHH---HHHHHH
T ss_pred HHHHH-----HHHHHHHHHHHHHHHCCCHHHHHH---HHHHHH
Confidence 88762 246677777776667787666443 444444
No 120
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.36 E-value=1.3e-05 Score=78.40 Aligned_cols=141 Identities=12% Similarity=-0.004 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCC----
Q 003082 130 DCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKP---- 205 (850)
Q Consensus 130 ~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---- 205 (850)
.+|+..|+++.+.| . ..++..+...+...+++++|+..|++..+.+ .+..++.++..|.. +
T Consensus 3 ~eA~~~~~~aa~~g-~---------~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~ 67 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG-D---------RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQA 67 (212)
T ss_dssp -CTTHHHHHHHHTT-C---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSC
T ss_pred chHHHHHHHHHHCC-C---------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCC
Confidence 35777788877643 1 2344455556667899999999999987754 45667777877777 5
Q ss_pred ChHHHHHHhhhC--CCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----cCCHHH
Q 003082 206 DVNLAIRYACIV--PRADILFCNFVREFGK----KRDLVSALRAYDASKKHLSS-PNMYICRTIIDVCGI----CGDYMK 274 (850)
Q Consensus 206 ~~~~A~~~~~~~--p~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~----~g~~~~ 274 (850)
++++|+.+|+.. +.+..+++.|...|.. .+++++|+..|+...+.|.. .+..++..|...|.. .+++++
T Consensus 68 ~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 147 (212)
T 3rjv_A 68 DYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK 147 (212)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence 788888887765 4555677777777776 77888888888887775431 125677777777777 667788
Q ss_pred HHHHHHHHHhC
Q 003082 275 SRAIYEDLRSQ 285 (850)
Q Consensus 275 A~~~~~~m~~~ 285 (850)
|+..|+...+.
T Consensus 148 A~~~~~~A~~~ 158 (212)
T 3rjv_A 148 ASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 88877777665
No 121
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.36 E-value=2.5e-06 Score=75.50 Aligned_cols=115 Identities=6% Similarity=-0.113 Sum_probs=88.1
Q ss_pred cCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCC
Q 003082 65 RDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGV 144 (850)
Q Consensus 65 ~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~ 144 (850)
.+|+. ...+...+..+.+.|+|++|+..|+++++. +|..... +......+...|++++|+..|+++++ +
T Consensus 8 inP~~-a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~------~~~~~~~~~~~~~~~~A~~~~~~al~--~ 76 (126)
T 4gco_A 8 INPEL-AQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAIL------YSNRAACLTKLMEFQRALDDCDTCIR--L 76 (126)
T ss_dssp CCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH------HHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HCHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHH------HHHHhhHHHhhccHHHHHHHHHHHHH--h
Confidence 46666 788889999999999999999999999988 5554332 22333456688999999999999995 4
Q ss_pred CCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHH
Q 003082 145 APLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIV 198 (850)
Q Consensus 145 ~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 198 (850)
.|+. ..++...+..+...|++++|++.|++.++.. |++......+.
T Consensus 77 ~p~~------~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~--P~~~~a~~~l~ 122 (126)
T 4gco_A 77 DSKF------IKGYIRKAACLVAMREWSKAQRAYEDALQVD--PSNEEAREGVR 122 (126)
T ss_dssp CTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hhhh------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--cCCHHHHHHHH
Confidence 6654 5667777888888999999999999988765 76655444443
No 122
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.35 E-value=6.3e-05 Score=77.62 Aligned_cols=178 Identities=8% Similarity=-0.025 Sum_probs=121.6
Q ss_pred HHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHH
Q 003082 119 GIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIV 198 (850)
Q Consensus 119 ~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 198 (850)
.+..+...|++++|++.+++..+. .+...........+...+..+...|++++|+..+++.+.......+.. .
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~--- 153 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKK--EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY--Q--- 153 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT--CCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT--H---
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcc--ccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH--H---
Confidence 445667899999999999998864 332211112223344455666788899999999988876542221110 0
Q ss_pred HHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC---CC-CC--CHHHHHHHHHHHHhcCCH
Q 003082 199 QLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH---LS-SP--NMYICRTIIDVCGICGDY 272 (850)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~-~p--~~~~~~~li~~~~~~g~~ 272 (850)
...+++.++..|...|++++|+..|++..+. .. .+ ...+++.+..+|.+.|++
T Consensus 154 ---------------------~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y 212 (293)
T 2qfc_A 154 ---------------------NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp ---------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ---------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhH
Confidence 0146788999999999999999999988732 11 11 225889999999999999
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChHHH-HHHHHHH
Q 003082 273 MKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMA-DMASYNILLKACCLAGNTVLA-QEIYGEV 350 (850)
Q Consensus 273 ~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~p-d~~t~~~Ll~~~~~~g~~~~A-~~i~~~m 350 (850)
++|+..|++..+ +.. ..+... -..+|..+...|.+.|+.++| ...|++.
T Consensus 213 ~~Al~~~~kal~--------------------------~~~---~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 213 EESLYQVNKAIE--------------------------ISC---RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHH--------------------------HHH---HTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--------------------------HHH---hcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 999999998653 221 112112 256788888899999999999 7777766
Q ss_pred HHh
Q 003082 351 KHL 353 (850)
Q Consensus 351 ~~~ 353 (850)
...
T Consensus 264 l~~ 266 (293)
T 2qfc_A 264 SFF 266 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 123
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.32 E-value=4.7e-06 Score=73.76 Aligned_cols=93 Identities=10% Similarity=-0.041 Sum_probs=53.9
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHH
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVRE 230 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~ 230 (850)
.+.+.+.+..+.+.|++++|++.|++.++.. |.....+..++.++...|++++|+..++.+ |.+..+|..++.+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 4556666667777888888888888877654 555555555555555555555555544332 4444444555555
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 003082 231 FGKKRDLVSALRAYDASKK 249 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~ 249 (850)
|...|++++|+..|+..++
T Consensus 91 ~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 5555555555555555444
No 124
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.29 E-value=3.6e-06 Score=77.02 Aligned_cols=109 Identities=8% Similarity=-0.016 Sum_probs=76.9
Q ss_pred hhccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHH
Q 003082 60 LSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKL 139 (850)
Q Consensus 60 l~~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~ 139 (850)
-+++..+|+. ...+..++..+.+.|++++|+..|++++.. +|.....+. .....+...|++++|+..|+++
T Consensus 26 ~~al~l~p~~-~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~------~lg~~~~~~g~~~~Ai~~~~~a 96 (151)
T 3gyz_A 26 KDINAIPDDM-MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIM------GLAAIYQIKEQFQQAADLYAVA 96 (151)
T ss_dssp GGGCCSCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH------HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhCCCHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHH------HHHHHHHHHccHHHHHHHHHHH
Confidence 3456677776 777778888888888888888888888887 555433322 2223445778888888888888
Q ss_pred HHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCC
Q 003082 140 NELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (850)
Q Consensus 140 ~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (850)
. .+.|+. ...+.+.+..+...|++++|+..|++.++..
T Consensus 97 l--~l~P~~------~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 97 F--ALGKND------YTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp H--HHSSSC------CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred H--hhCCCC------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8 446665 4456666677777888888888888877654
No 125
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.29 E-value=1.1e-06 Score=88.36 Aligned_cols=188 Identities=8% Similarity=-0.038 Sum_probs=137.4
Q ss_pred hhhccccCCcchhhHHHHH-------HHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhH---------------HHHH
Q 003082 59 LLSTVRRDLSSRNDYYADM-------ASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLS---------------LEMV 116 (850)
Q Consensus 59 ~l~~l~~~p~~~~~~~~~l-------~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~---------------~~~~ 116 (850)
.-+++..+|+- .+.|..+ ...+...++..+++..+++.+.. .|..+...+. -.+.
T Consensus 29 F~~a~~~dP~~-~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~~~~v~~r~dl~ 105 (282)
T 4f3v_A 29 FTEITNYDESA-CDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDITYPVTSPLAIT 105 (282)
T ss_dssp HHHHHHHCTTC-HHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCCEEECSSHHHHH
T ss_pred HHHHHHhChhh-hHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCcccccccccCCHhHHH
Confidence 33467888988 9999999 78899999999999988888775 5554433332 1111
Q ss_pred HHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCC---ccc
Q 003082 117 ASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKE---LDE 193 (850)
Q Consensus 117 ~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~ 193 (850)
......+...|++++|.++|+.+.. ..|+. . .....+..+.+.++|++|+..|+..... +++ ...
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~--~~p~~------~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d~~~~~~a 173 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPV--AGSEH------L-VAWMKAVVYGAAERWTDVIDQVKSAGKW---PDKFLAGAA 173 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCC--TTCHH------H-HHHHHHHHHHHTTCHHHHHHHHTTGGGC---SCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh--cCCch------H-HHHHHHHHHHHcCCHHHHHHHHHHhhcc---CCcccHHHH
Confidence 2223456689999999999998873 45654 2 3333455677899999999999855432 222 236
Q ss_pred HHHHHHHHHcCCChHHHHHHhhhC------CC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003082 194 EFRIVQLCVNKPDVNLAIRYACIV------PR-ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263 (850)
Q Consensus 194 ~~~l~~~~~~~~~~~~A~~~~~~~------p~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 263 (850)
++.++.++...|++++|+.+|+.. |. .......+..++.+.|+.++|..+|+++.... |+...+..|.
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL~ 248 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAALK 248 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHHh
Confidence 788999999999999999999876 22 22467788999999999999999999999864 4455555553
No 126
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.28 E-value=1.7e-06 Score=79.15 Aligned_cols=105 Identities=11% Similarity=-0.021 Sum_probs=59.1
Q ss_pred HHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHh
Q 003082 135 VLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYA 214 (850)
Q Consensus 135 ~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 214 (850)
.|++++ .+.|+. ...+...+..+...|++++|+..|++.+... |++...+..++.++...|++++|+..|
T Consensus 9 ~~~~al--~~~p~~------~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~ 78 (148)
T 2vgx_A 9 TIAMLN--EISSDT------LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSY 78 (148)
T ss_dssp SHHHHT--TCCHHH------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHH--cCCHhh------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 345555 445544 5566666777778899999998888887654 555544555555554444444444444
Q ss_pred hhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003082 215 CIV----PRADILFCNFVREFGKKRDLVSALRAYDASKK 249 (850)
Q Consensus 215 ~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 249 (850)
+.+ |.+..++..++.+|...|++++|+..|+..++
T Consensus 79 ~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 79 SYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 332 44444444444444444444444444444433
No 127
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.26 E-value=7.7e-05 Score=72.76 Aligned_cols=114 Identities=11% Similarity=-0.035 Sum_probs=68.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhhhcCCcccC---HhHHHHHHHHHHh-
Q 003082 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCL----AGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYSTIVKVFAD- 375 (850)
Q Consensus 304 ~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~----~g~~~~A~~i~~~m~~~~~~g~~~~d---~~ty~~li~~~~~- 375 (850)
+.++|++.|++..+.| +...+..|-..|.. .+++++|.+.|++..+ ..++ ...+..|-..|..
T Consensus 68 ~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~------~~~~~~~~~a~~~Lg~~y~~g 138 (212)
T 3rjv_A 68 DYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR------DSESDAAVDAQMLLGLIYASG 138 (212)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS------STTSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH------cCCCcchHHHHHHHHHHHHcC
Confidence 4445555555554433 45555556555655 5677777777776654 2222 5566666666666
Q ss_pred ---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHcC
Q 003082 376 ---AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA-G-----LVEQAMHLFEEMLQAG 428 (850)
Q Consensus 376 ---~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~-g-----~~~~A~~l~~~m~~~g 428 (850)
.+++++|+..|++..+.+ .+...+..|...|.+. | +.++|..+|+...+.|
T Consensus 139 ~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 139 VHGPEDDVKASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp SSSSCCHHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 667777777777776651 2344556666666543 2 6777777777777666
No 128
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.25 E-value=3.3e-06 Score=93.19 Aligned_cols=147 Identities=8% Similarity=-0.041 Sum_probs=107.1
Q ss_pred HHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHH
Q 003082 79 SKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLL 158 (850)
Q Consensus 79 ~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l 158 (850)
..+..+|+|++|+.++++.++......+..++.....+.++...|..+|++++|..+++++++....--...++.+...+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 44668899999999999999887554555566667888888888999999999999999987652111112356667888
Q ss_pred HHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChH
Q 003082 159 KNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLV 238 (850)
Q Consensus 159 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~ 238 (850)
.+++..|..+|++++|+.++++.++.....-+.. .+. ...+...|...+...+.++
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~-------------Hp~-----------~~~~~~~l~~~~~e~~~~~ 452 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS-------------HPI-----------TKDLEAMRMQTEMELRMFR 452 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-------------SHH-----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC-------------ChH-----------HHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999988764321110100 111 1134456777888888899
Q ss_pred HHHHHHHHHHh
Q 003082 239 SALRAYDASKK 249 (850)
Q Consensus 239 ~A~~~~~~m~~ 249 (850)
+|..+|..+.+
T Consensus 453 ~ae~~~~~~~~ 463 (490)
T 3n71_A 453 QNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888765
No 129
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.21 E-value=1.5e-05 Score=74.04 Aligned_cols=126 Identities=11% Similarity=-0.070 Sum_probs=90.1
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHH
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVRE 230 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~p~~~~~~~~li~~ 230 (850)
...+...+..+...|++++|+..+++.+... |+....+..++..+...|++++|+.++.. .|.+..++..++..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 3445556666778899999999999988765 66677777788888888888888877655 36666777778888
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHH
Q 003082 231 FGKKRDLVSALRAYDASKKHLSSPNMYIC--RTIIDVCGICGDYMKSRAIYEDLR 283 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~ 283 (850)
|...|++++|+..|++..+..+ .+...+ ..++..+...|++++|+..+....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8888888888888888776532 233444 333334666777888877777654
No 130
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.14 E-value=6.6e-06 Score=74.53 Aligned_cols=92 Identities=8% Similarity=-0.089 Sum_probs=51.4
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHH
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVRE 230 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~ 230 (850)
...+...+..+...|++++|+..|++.+... |++...+..++.++...|++++|+..|+.+ |.+..++..++.+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 4556666677778899999999888887654 555544444444444444444444444331 3333444444444
Q ss_pred HHhcCChHHHHHHHHHHH
Q 003082 231 FGKKRDLVSALRAYDASK 248 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~ 248 (850)
|...|++++|+..|+..+
T Consensus 96 ~~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSAR 113 (142)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 444444444444444443
No 131
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.14 E-value=0.00012 Score=63.58 Aligned_cols=115 Identities=17% Similarity=0.167 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003082 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (850)
Q Consensus 324 ~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ 403 (850)
...+..+...+...|++++|.+.|+++.+. .+.+..++..+...+...|++++|..+|+++.+... .+..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 82 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYN 82 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHH
Confidence 567788888899999999999999988763 234567888888899999999999999999887643 36788888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003082 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (850)
Q Consensus 404 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~ 445 (850)
+...+...|++++|...|+++.+.. +.+...+..+...+.+
T Consensus 83 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 9999999999999999999988764 3345555555555444
No 132
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.14 E-value=4.1e-06 Score=79.15 Aligned_cols=120 Identities=7% Similarity=0.006 Sum_probs=67.1
Q ss_pred hcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcC
Q 003082 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK 204 (850)
Q Consensus 125 ~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (850)
..|++++|+..|+++.+. .|+. ..++...+..+...|++++|+..+++.+... |++
T Consensus 22 ~~~~~~~A~~~~~~al~~--~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~-------------- 77 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA--NPQN------SEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GEN-------------- 77 (177)
T ss_dssp -----CCCCHHHHHHHHH--CCSC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSC--------------
T ss_pred hccCHHHHHHHHHHHHHh--CCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCC--------------
Confidence 456667777777666633 4433 3344445555556677777777666665543 333
Q ss_pred CChHHHHHHhhhCCCCcchHHHHHHH-HHhcCCh--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003082 205 PDVNLAIRYACIVPRADILFCNFVRE-FGKKRDL--VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281 (850)
Q Consensus 205 ~~~~~A~~~~~~~p~~~~~~~~li~~-~~~~g~~--~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 281 (850)
..++..++.. |...|++ ++|+..|+...+..+ .+...+..+..+|...|++++|...|+.
T Consensus 78 ----------------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 140 (177)
T 2e2e_A 78 ----------------AELYAALATVLYYQASQHMTAQTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQK 140 (177)
T ss_dssp ----------------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 3445555555 5566666 666666666665421 2455566666666666666666666666
Q ss_pred HHhC
Q 003082 282 LRSQ 285 (850)
Q Consensus 282 m~~~ 285 (850)
..+.
T Consensus 141 al~~ 144 (177)
T 2e2e_A 141 VMDL 144 (177)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 6654
No 133
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.14 E-value=1.3e-05 Score=75.54 Aligned_cols=113 Identities=12% Similarity=0.124 Sum_probs=82.2
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCH--HHHHHHHHHHHhCCCCcCHHHHHH
Q 003082 220 ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDV-CGICGDY--MKSRAIYEDLRSQNVTLNIYVFNS 296 (850)
Q Consensus 220 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~--~~A~~~~~~m~~~g~~pd~~t~~~ 296 (850)
+..++..++..|...|++++|+..|+...+..+ .+...+..+..+ |...|++ ++|...|+...+... -+...+..
T Consensus 43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~ 120 (177)
T 2e2e_A 43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDS-NEITALML 120 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC-CcHHHHHH
Confidence 346677888889999999999999999887542 467788888888 8899998 999999999987632 23444444
Q ss_pred HHH--hhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003082 297 LMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336 (850)
Q Consensus 297 ll~--~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~ 336 (850)
+-. ...|+++.|...|++..+.. |+......++....+
T Consensus 121 la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~i~~ 160 (177)
T 2e2e_A 121 LASDAFMQANYAQAIELWQKVMDLN--SPRINRTQLVESINM 160 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC--CTTSCHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhhC--CCCccHHHHHHHHHH
Confidence 433 35689999999999998864 333333344444444
No 134
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.13 E-value=8.3e-05 Score=72.31 Aligned_cols=133 Identities=17% Similarity=0.077 Sum_probs=90.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhc
Q 003082 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA 302 (850)
Q Consensus 223 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~ 302 (850)
.+..++..+...|++++|+..|++.. .|+..+|..+..+|...|++++|+..|+...+..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------------- 67 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD---------------- 67 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------
Confidence 34566777778888888888887663 3577778888888888888888888877765321
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCC----------ccc-CHhHHHHHHH
Q 003082 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV----------LKL-DVFTYSTIVK 371 (850)
Q Consensus 303 ~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~----------~~~-d~~ty~~li~ 371 (850)
+.+...|..+...|...|++++|.+.|+...+...... ..| +...|..+..
T Consensus 68 ------------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (213)
T 1hh8_A 68 ------------------KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAF 129 (213)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHH
T ss_pred ------------------ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHH
Confidence 23456677777777788888888888877766321100 011 1256667777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC
Q 003082 372 VFADAKWWQMALKVKEDMLSAG 393 (850)
Q Consensus 372 ~~~~~g~~~~A~~l~~~m~~~g 393 (850)
.|...|++++|...|++..+..
T Consensus 130 ~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 130 MYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHccCHHHHHHHHHHHHHcC
Confidence 7777788888888777777653
No 135
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.13 E-value=2e-05 Score=71.98 Aligned_cols=110 Identities=12% Similarity=0.028 Sum_probs=83.1
Q ss_pred hhhccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHH
Q 003082 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (850)
Q Consensus 59 ~l~~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~ 138 (850)
+-+++..+|+. ...+..++..+...|++++|+..|+.++.. +|....... .....+...|++++|+..|++
T Consensus 10 ~~~al~~~p~~-~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~------~lg~~~~~~g~~~~A~~~~~~ 80 (148)
T 2vgx_A 10 IAMLNEISSDT-LEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFL------GLGACRQAMGQYDLAIHSYSY 80 (148)
T ss_dssp HHHHTTCCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH------HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHhh-HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHH------HHHHHHHHHhhHHHHHHHHHH
Confidence 34466777776 778888999999999999999999999988 554433321 222345588999999999999
Q ss_pred HHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCC
Q 003082 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (850)
Q Consensus 139 ~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (850)
+.+ +.|+. ...+...+..+...|++++|+..|++.++..
T Consensus 81 al~--l~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 81 GAV--MDIXE------PRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHH--HSTTC------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHh--cCCCC------chHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 984 46664 4556667777888999999999999887654
No 136
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.11 E-value=0.00013 Score=67.32 Aligned_cols=131 Identities=11% Similarity=0.044 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003082 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (850)
Q Consensus 324 ~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ 403 (850)
...+..+...+...|++++|...|+...+. .+.+..+|..+...+...|++++|...+++..+... .+...|..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~ 86 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIEL-----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYR 86 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHH
Confidence 456777888889999999999999998874 234677888899999999999999999999987643 36788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHhCCHHHHHHHHHHHhh
Q 003082 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN--ILLQACVEACQFDRAFRLFRSWTL 461 (850)
Q Consensus 404 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~A~~l~~~m~~ 461 (850)
+...+...|++++|...|++..+.. +.+...+. .....+.+.|++++|.+.+.....
T Consensus 87 ~a~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 87 RAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999998864 33444553 344447788999999999987643
No 137
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.10 E-value=1.7e-05 Score=72.89 Aligned_cols=150 Identities=7% Similarity=-0.102 Sum_probs=100.4
Q ss_pred hhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccc
Q 003082 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (850)
Q Consensus 70 ~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~ 149 (850)
....+..++..+...|++++|+..++++++.... ..........+......+...|++++|+..|+++.+.. +...
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~~ 83 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE--FGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLA--RQLK 83 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH--hCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHhC
Confidence 3678889999999999999999999999876322 11111222344455566779999999999999988542 1111
Q ss_pred cchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHH
Q 003082 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (850)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~ 229 (850)
.......++...+..+...|++++|+..+++.+.......+ .. ....++..+..
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----------------~~----------~~~~~~~~la~ 137 (164)
T 3ro3_A 84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD----------------RI----------GEGRACWSLGN 137 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------------HH----------HHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc----------------hH----------hHHHHHHHHHH
Confidence 11222445666677778889999999988877643210000 00 00145667888
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 003082 230 EFGKKRDLVSALRAYDASKK 249 (850)
Q Consensus 230 ~~~~~g~~~~A~~~~~~m~~ 249 (850)
.|...|++++|...|++..+
T Consensus 138 ~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 138 AYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 88888999999888887664
No 138
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.10 E-value=2.6e-05 Score=69.01 Aligned_cols=114 Identities=10% Similarity=-0.029 Sum_probs=70.3
Q ss_pred hhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHH
Q 003082 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFV 228 (850)
Q Consensus 153 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li 228 (850)
.....+...+..+...|++++|+..+++.+... |+....+..++..+...|++++|+.+++.+ |.+..++..++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 335566667777778899999999999887654 555555666666666666666666655442 44455566666
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003082 229 REFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC 269 (850)
Q Consensus 229 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 269 (850)
..|.+.|++++|+..|++..+... .+...+..+..++...
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHh
Confidence 666666666666666666555321 1334444444444443
No 139
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.09 E-value=0.00011 Score=71.53 Aligned_cols=129 Identities=10% Similarity=-0.118 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003082 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405 (850)
Q Consensus 326 t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li 405 (850)
.+..+...+...|++++|...|++. +.++...|..+...|...|++++|...|++..+... .+...|..+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg 78 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV--------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRG 78 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS--------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH--------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHH
Confidence 4556777888999999999999865 356888999999999999999999999999987653 3678899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCC--------------C-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Q 003082 406 NACANAGLVEQAMHLFEEMLQAGCE--------------P-NSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (850)
Q Consensus 406 ~~~~~~g~~~~A~~l~~~m~~~g~~--------------p-~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~ 463 (850)
..|...|++++|...|++..+.... | ....+..+..+|.+.|++++|.+.|+......
T Consensus 79 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 79 MLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999999885311 1 12678888999999999999999999887654
No 140
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.08 E-value=0.00017 Score=74.86 Aligned_cols=114 Identities=10% Similarity=-0.021 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcC-chhHHHHHHHHHHHcCCCCccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREG-RIDCVVGVLKKLNELGVAPLEL 149 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~l~~~~~~~~~p~~~ 149 (850)
..++..+...+.+.+..++|+.+++.++.. +|..++... ....++. ..| .+++++++++.++ ...|..
T Consensus 54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn---~R~~iL~---~l~~~l~eEL~~~~~~L--~~nPKn- 122 (349)
T 3q7a_A 54 KDAMDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQ---YRFSLLT---SLNKSLEDELRLMNEFA--VQNLKS- 122 (349)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHH---HHHHHHH---HTTCCHHHHHHHHHHHH--HTTCCC-
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHH---HHHHHHH---HhhhhHHHHHHHHHHHH--HhCCCc-
Confidence 344555555566667778999999999998 777666533 2222332 345 5899999999999 457765
Q ss_pred cchhhhHHHHHHHHhhhhc-C-cHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHH
Q 003082 150 FDGSGFKLLKNECQRLLDS-G-EVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (850)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~-g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (850)
+.++......+... + ++++++++++++++.. |.+..+|+.-.-.+.
T Consensus 123 -----y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d--pkNy~AW~~R~wvl~ 170 (349)
T 3q7a_A 123 -----YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD--PKNYHTWAYLHWLYS 170 (349)
T ss_dssp -----HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC--TTCHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 55555554445444 5 7788999999888654 777666665544443
No 141
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.08 E-value=0.02 Score=63.35 Aligned_cols=333 Identities=8% Similarity=0.006 Sum_probs=169.7
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhC-CCC-cCHHHHHHHHHhhc------CCh
Q 003082 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD-YMKSRAIYEDLRSQ-NVT-LNIYVFNSLMNVNA------HDL 305 (850)
Q Consensus 235 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-g~~-pd~~t~~~ll~~~~------~~~ 305 (850)
|+++.+..+|++.+.. .|+...|..-+....+.+. .+....+|+..... |.. .+...|...+.... ++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7888899999888874 4688888888877666663 45567777776653 543 35677777776533 356
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------------cCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHH
Q 003082 306 KFTLEVYKNMQKLGVMADMASYNILLKACCL-------------AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372 (850)
Q Consensus 306 ~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~-------------~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~ 372 (850)
+.+.++|++.+......-...|......-.. .+.+..|..+++.+...... .+...|...+.-
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~----~s~~~W~~y~~~ 181 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG----WSVKNAARLIDL 181 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----CSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh----ccHHHHHHHHHH
Confidence 6788888888763211111122222111000 11222334444433331100 122334333332
Q ss_pred HHhcC--C-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003082 373 FADAK--W-----WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (850)
Q Consensus 373 ~~~~g--~-----~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~ 445 (850)
-...+ - .+.+..+|++++... +-+...|-..+..+.+.|+.+.|..+|+..... |....... .|..
T Consensus 182 E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~ 254 (493)
T 2uy1_A 182 EMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGL 254 (493)
T ss_dssp HHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHH
T ss_pred HhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHh
Confidence 21110 0 234555666666543 224556666666666667777777777766665 33221111 1222
Q ss_pred hCCHHHHHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHH
Q 003082 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC 525 (850)
Q Consensus 446 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~ 525 (850)
..+.++. ++.+ ...+
T Consensus 255 ~~e~~~~---~~~l--------------------------------------------------------------~~~~ 269 (493)
T 2uy1_A 255 VMDEEAV---YGDL--------------------------------------------------------------KRKY 269 (493)
T ss_dssp HTTCTHH---HHHH--------------------------------------------------------------HHHT
T ss_pred hcchhHH---HHHH--------------------------------------------------------------HHHH
Confidence 2111111 1111 1111
Q ss_pred hc-cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHHH
Q 003082 526 CT-DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYT--TAIKVCVRSKRLKQA 602 (850)
Q Consensus 526 ~~-~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~--~li~~~~~~g~~~~A 602 (850)
.. ..+.+. + .. ......+|...+..+.+.+.++.|..+|++. ... ..+...|- +.+...+ .++.+.|
T Consensus 270 ~~~~~~~~~-----~-~~-~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~-~~d~~~a 339 (493)
T 2uy1_A 270 SMGEAESAE-----K-VF-SKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA-TGSRATP 339 (493)
T ss_dssp C----------------C-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH-HCCSHHH
T ss_pred Hhhccchhh-----h-hc-ccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH-CCChHHH
Confidence 00 000000 0 00 0011245666677776778899999999999 321 12344443 2233222 3469999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003082 603 FSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTYLKELIE 664 (850)
Q Consensus 603 ~~l~~~m~~~g~~p~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~~g~~p~~~~~~~li~ 664 (850)
.++|+...+.- .-+...+...++-..+.|+.+. +..+|+... -....|...++
T Consensus 340 r~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~---aR~l~er~~-----k~~~lw~~~~~ 392 (493)
T 2uy1_A 340 YNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEEN---ARALFKRLE-----KTSRMWDSMIE 392 (493)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH---HHHHHHHSC-----CBHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHH-----HHHHHHHHHHH
Confidence 99999988742 1234556667777778888776 444666652 13455555554
No 142
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.07 E-value=3.1e-05 Score=68.18 Aligned_cols=114 Identities=11% Similarity=-0.067 Sum_probs=72.6
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHH
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVRE 230 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~p~~~~~~~~li~~ 230 (850)
...+...+..+...|++++|+..+++.+... |+....+..++..+...|++++|+.++.. .|.+..++..++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 4455556666778899999999999887654 55555666666666666666666666544 24555566666666
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003082 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD 271 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 271 (850)
|.+.|++++|...|+...+..+ .+...+..+..++.+.|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 6666666666666666655422 244555555555555544
No 143
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.06 E-value=0.00052 Score=71.28 Aligned_cols=114 Identities=9% Similarity=-0.043 Sum_probs=73.0
Q ss_pred CcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCC-ChHHHHHHhhh----CCCCcchHHHHHHHHHhc-C-ChHHHH
Q 003082 169 GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKP-DVNLAIRYACI----VPRADILFCNFVREFGKK-R-DLVSAL 241 (850)
Q Consensus 169 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~----~p~~~~~~~~li~~~~~~-g-~~~~A~ 241 (850)
+..++|+++++.++... |+....|+.-...+...+ .+++++.+++. -|++..+|+.-...+.+. + ++++++
T Consensus 68 e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 45578889999988776 878777877777776666 47777766544 366666776665555555 5 677777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhC
Q 003082 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYM--------KSRAIYEDLRSQ 285 (850)
Q Consensus 242 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~ 285 (850)
++++.+++... .|..+|+.-.-++.+.|.++ ++++.++.+.+.
T Consensus 146 ~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~ 196 (349)
T 3q7a_A 146 EYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV 196 (349)
T ss_dssp HHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh
Confidence 77777776432 35666665555554444444 555555555443
No 144
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.06 E-value=0.00014 Score=63.81 Aligned_cols=120 Identities=11% Similarity=0.053 Sum_probs=97.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003082 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (850)
Q Consensus 323 d~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~ 402 (850)
+...+..+...+...|++++|...|+..... .+.+...|..+...+...|++++|...+++..+... .+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 84 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL-----NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYG 84 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHH
Confidence 4567778888899999999999999988773 234677888888899999999999999999887643 3578888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCH
Q 003082 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449 (850)
Q Consensus 403 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 449 (850)
.+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 89999999999999999999998864 34667777788888777764
No 145
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.06 E-value=9.4e-05 Score=71.14 Aligned_cols=140 Identities=9% Similarity=-0.039 Sum_probs=90.2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHH
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 296 (850)
.++..+...|...|++++|+..|++..+. +..+ ...++..+...|...|++++|...|++..+
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~------------ 94 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERE------------ 94 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------
Confidence 55667777888888888888888776652 2222 345688888888899999999888887542
Q ss_pred HHHhhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCc-ccCHhHHHHHHHHH
Q 003082 297 LMNVNAHDLKFTLEVYKNMQKLGVMA--DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL-KLDVFTYSTIVKVF 373 (850)
Q Consensus 297 ll~~~~~~~~~a~~l~~~m~~~g~~p--d~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~-~~d~~ty~~li~~~ 373 (850)
+++ ..+-.+ ....+..+...+...|++++|...+++.......... ..-..++..+...+
T Consensus 95 --------------~~~---~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 157 (203)
T 3gw4_A 95 --------------LLA---SLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLA 157 (203)
T ss_dssp --------------HHH---HSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --------------HHH---HcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 221 112111 2345777788888889999999988887654322211 11122345566666
Q ss_pred HhcCCHHHHHHHHHHHH
Q 003082 374 ADAKWWQMALKVKEDML 390 (850)
Q Consensus 374 ~~~g~~~~A~~l~~~m~ 390 (850)
...|++++|...+++..
T Consensus 158 ~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 158 QQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHH
Confidence 67777777776666654
No 146
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.06 E-value=6.2e-05 Score=72.43 Aligned_cols=165 Identities=15% Similarity=-0.014 Sum_probs=109.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHH
Q 003082 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEV 311 (850)
Q Consensus 232 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l 311 (850)
...|++++|.+.++.+.. .......++..+...|...|++++|...|++..+ +
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------------------------~ 55 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQ--------------------------Q 55 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------H
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH--------------------------H
Confidence 457889999986655544 2223567888999999999999999999987653 1
Q ss_pred HHHHHHcCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCccc--CHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 003082 312 YKNMQKLGVM-ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL--DVFTYSTIVKVFADAKWWQMALKVKED 388 (850)
Q Consensus 312 ~~~m~~~g~~-pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~--d~~ty~~li~~~~~~g~~~~A~~l~~~ 388 (850)
+. +.|.. ....+++.+...+...|++++|.+.|++..+......-.+ ....+..+...+...|++++|...+++
T Consensus 56 ~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 56 AQ---KSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HH---TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HH---HcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 11 11111 1345677888899999999999999998877543221011 234577777788888888888888887
Q ss_pred HHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 389 MLSA----GVTP-NTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (850)
Q Consensus 389 m~~~----g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 426 (850)
.... +... -..++..+...+...|++++|...+++..+
T Consensus 133 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 133 SLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 7532 1110 122356666777777888887777776654
No 147
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.06 E-value=2.7e-05 Score=70.40 Aligned_cols=108 Identities=6% Similarity=-0.057 Sum_probs=80.9
Q ss_pred hccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHH
Q 003082 61 STVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLN 140 (850)
Q Consensus 61 ~~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~ 140 (850)
+++..+|+. ...+..++..+...|++++|+..|+.++.. +|....... .....+...|++++|+..|+++.
T Consensus 9 ~al~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~------~lg~~~~~~g~~~~A~~~~~~al 79 (142)
T 2xcb_A 9 MLRGLSEDT-LEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFL------GLGACRQSLGLYEQALQSYSYGA 79 (142)
T ss_dssp CCTTCCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH------HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHH-HHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHH------HHHHHHHHHhhHHHHHHHHHHHH
Confidence 355667776 777778899999999999999999999988 554433322 22234558899999999999998
Q ss_pred HcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCC
Q 003082 141 ELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (850)
Q Consensus 141 ~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (850)
+. .|+. ...+...+..+...|++++|+..|++.+...
T Consensus 80 ~~--~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 80 LM--DINE------PRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HH--CTTC------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hc--CCCC------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 54 6664 4455666777788899999999999887654
No 148
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.05 E-value=3e-05 Score=81.84 Aligned_cols=147 Identities=7% Similarity=-0.017 Sum_probs=92.5
Q ss_pred cCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCC---------------
Q 003082 126 EGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKE--------------- 190 (850)
Q Consensus 126 ~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------------- 190 (850)
.+++++|++.|+...+. .|+ ....+...+..+...|++++|+..|++.+... |+.
T Consensus 126 L~~~~~A~~~~~~a~~~--~p~------~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~ 195 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEE--KLE------QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALR 195 (336)
T ss_dssp EEEEECCCCGGGCCHHH--HHH------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHH
T ss_pred EeecccccchhcCCHHH--HHH------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHH
Confidence 34555666655554421 222 24556666777788899999999999988765 544
Q ss_pred cccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003082 191 LDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVC 266 (850)
Q Consensus 191 ~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 266 (850)
...+..++.++...|++++|+.+++.+ |.+..++..+..+|...|++++|+..|++.++..+ .+..++..+..++
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
Confidence 355666666666677777766665543 55556666666667777777777777666665421 2455666666666
Q ss_pred HhcCCHHHH-HHHHHHHH
Q 003082 267 GICGDYMKS-RAIYEDLR 283 (850)
Q Consensus 267 ~~~g~~~~A-~~~~~~m~ 283 (850)
.+.|++++| ..+|..|.
T Consensus 275 ~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666 33454443
No 149
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.04 E-value=0.00014 Score=74.41 Aligned_cols=195 Identities=9% Similarity=-0.117 Sum_probs=122.2
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 003082 220 ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299 (850)
Q Consensus 220 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 299 (850)
+...+..++..+.+.|++++|+..|+..++..+ .+...|..+..+|.+.|++++|+..|+...+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------------- 68 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD------------- 68 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------------
Confidence 345677788888889999999999988887532 367788888888889999999988888776431
Q ss_pred hhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCH
Q 003082 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379 (850)
Q Consensus 300 ~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~ 379 (850)
+.+...+..+..+|...|++++|...|....+.........+...+..+ ...+..
T Consensus 69 ---------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~-- 123 (281)
T 2c2l_A 69 ---------------------GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKK-- 123 (281)
T ss_dssp ---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHH--
T ss_pred ---------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHH--
Confidence 2356677788888888899999988888877643211001111111111 111111
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHh-CCHHHHHHHHH
Q 003082 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC-NILLQACVEA-CQFDRAFRLFR 457 (850)
Q Consensus 380 ~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~-~~ll~~~~~~-g~~~~A~~l~~ 457 (850)
-+..........+......+.. + ..|+.++|++.++...+. .|+.... ..+-..+.+. +.+++|.++|.
T Consensus 124 -----~~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~ 194 (281)
T 2c2l_A 124 -----RWNSIEERRIHQESELHSYLTR-L-IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFS 194 (281)
T ss_dssp -----HHHHHHHTCCCCCCHHHHHHHH-H-HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHhhhHHHHHHHHH-H-HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1222233333444444443322 2 368888888888877654 4554433 3333344444 67888999998
Q ss_pred HHhhc
Q 003082 458 SWTLS 462 (850)
Q Consensus 458 ~m~~~ 462 (850)
...+.
T Consensus 195 ~a~~~ 199 (281)
T 2c2l_A 195 QVDEK 199 (281)
T ss_dssp HSSCT
T ss_pred hhhcc
Confidence 77653
No 150
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.04 E-value=0.00025 Score=77.60 Aligned_cols=180 Identities=13% Similarity=-0.020 Sum_probs=113.8
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHh---------hhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCC
Q 003082 75 ADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFA---------SMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA 145 (850)
Q Consensus 75 ~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~---------~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~ 145 (850)
..-+..+.+.|+|++|+..|..+++......... .......+..+...|...|++++|.+.|.++....
T Consensus 8 l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~-- 85 (434)
T 4b4t_Q 8 LEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM-- 85 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH--
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--
Confidence 3456778899999999999999998743211100 00112234455666778999999999998887531
Q ss_pred Cccccchhhh-HHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchH
Q 003082 146 PLELFDGSGF-KLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILF 224 (850)
Q Consensus 146 p~~~~~~~~~-~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~ 224 (850)
+.. ...... .+...+...+...|++++|+.+++............ +....++
T Consensus 86 ~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------------------------~~~~~~~ 138 (434)
T 4b4t_Q 86 MQF-AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV--------------------------FLKHSLS 138 (434)
T ss_dssp HTS-CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC--------------------------SSHHHHH
T ss_pred HHc-cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc--------------------------HHHHHHH
Confidence 111 011111 111112233445677888887777654321000000 0011466
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003082 225 CNFVREFGKKRDLVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (850)
Q Consensus 225 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (850)
..|+..|...|++++|..+++++... +..+ ...++..++..|...|++++|..+++...
T Consensus 139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 78899999999999999999877643 1122 34578899999999999999999998765
No 151
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.02 E-value=2.4e-05 Score=86.32 Aligned_cols=140 Identities=10% Similarity=-0.057 Sum_probs=102.8
Q ss_pred HHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHH
Q 003082 121 VKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL 200 (850)
Q Consensus 121 ~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (850)
..+..+|++++|+.+|+++++.....-...++.+..++.+++..|..+|++++|+.++++.++.....-+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG---------- 386 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH---------- 386 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC----------
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC----------
Confidence 3455899999999999999876433333446677888888889999999999999999987653211101
Q ss_pred HHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC-----CCC-CC-HHHHHHHHHHHHhcCCHH
Q 003082 201 CVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH-----LSS-PN-MYICRTIIDVCGICGDYM 273 (850)
Q Consensus 201 ~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~-p~-~~~~~~li~~~~~~g~~~ 273 (850)
...++ ...++++|+..|..+|++++|+.+|++.++. |.. |+ ..+.+.+-.++...+.++
T Consensus 387 ---~~Hp~-----------~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~ 452 (490)
T 3n71_A 387 ---HNNAQ-----------LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFR 452 (490)
T ss_dssp ---TTCHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCHH-----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 11111 1266788999999999999999998877642 433 33 335677778888899999
Q ss_pred HHHHHHHHHHh
Q 003082 274 KSRAIYEDLRS 284 (850)
Q Consensus 274 ~A~~~~~~m~~ 284 (850)
+|..+|..+++
T Consensus 453 ~ae~~~~~~~~ 463 (490)
T 3n71_A 453 QNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998875
No 152
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.01 E-value=6e-05 Score=65.58 Aligned_cols=96 Identities=14% Similarity=0.100 Sum_probs=57.5
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCC
Q 003082 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRD 236 (850)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~ 236 (850)
.+...+..+...|++++|++.++++.... |+.. .++..++..|.+.|+
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~------------------------------~~~~~la~~~~~~~~ 58 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNA------------------------------EAWYNLGNAYYKQGD 58 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH------------------------------HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcH------------------------------HHHHHHHHHHHHhCC
Confidence 34445555667788888888888776543 3333 344555555666666
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 237 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
+++|+..|+++.+.. +.+..++..+..+|...|++++|...|+++.+.
T Consensus 59 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 59 YDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 666666666655532 134555566666666666666666666665543
No 153
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.00 E-value=0.00021 Score=78.27 Aligned_cols=111 Identities=6% Similarity=-0.101 Sum_probs=60.9
Q ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCh
Q 003082 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDL 237 (850)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~ 237 (850)
.+..+..+.+.|++++|++.|..++.......+.... .+........ ...++..|+..|...|++
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~---------~~~~~~~~~~------~~~al~~l~~~y~~~~~~ 71 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAG---------ASVDDKRRNE------QETSILELGQLYVTMGAK 71 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSS---------SSBCSHHHHH------HHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHH---------HHHHHHHhhh------HHHHHHHHHHHHHHCCCH
Confidence 4455667778999999999999998765322211100 0000000000 013455677777777777
Q ss_pred HHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003082 238 VSALRAYDASKKHLS-SPNM----YICRTIIDVCGICGDYMKSRAIYEDLR 283 (850)
Q Consensus 238 ~~A~~~~~~m~~~g~-~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (850)
++|.+.|..+...-. .++. .+.+.+-..+...|++++|..+++...
T Consensus 72 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 122 (434)
T 4b4t_Q 72 DKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSI 122 (434)
T ss_dssp HHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 777777776554211 1111 123333344445577777777777654
No 154
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.00 E-value=0.00014 Score=64.13 Aligned_cols=120 Identities=15% Similarity=0.090 Sum_probs=95.7
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003082 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400 (850)
Q Consensus 321 ~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 400 (850)
+.+...+..+...+...|++++|...|++..+. .+.+...|..+...|...|++++|...+++..+.... +...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~ 86 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR-----NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKG 86 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT-----CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHH
Confidence 345677888889999999999999999988763 2336778888888999999999999999998876433 6788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Q 003082 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447 (850)
Q Consensus 401 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g 447 (850)
+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 8899999999999999999999988763 234456666666666554
No 155
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.00 E-value=6.9e-06 Score=79.28 Aligned_cols=130 Identities=6% Similarity=-0.124 Sum_probs=73.8
Q ss_pred HhhhcCchhHHHHHHHHHHHcCCCCccccchhh----------hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCc
Q 003082 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSG----------FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKEL 191 (850)
Q Consensus 122 ~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~----------~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 191 (850)
.+...|++++|+..|+++++. .|+...+... ..++...+..+...|++++|+..+++.++.. |
T Consensus 47 ~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p--- 119 (198)
T 2fbn_A 47 EFFKKNEINEAIVKYKEALDF--FIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID--K--- 119 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--T---
T ss_pred HHHHcCCHHHHHHHHHHHHHH--HhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--c---
Confidence 344667777777777777742 3332111000 2345555556666777777777777666543 3
Q ss_pred ccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003082 192 DEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD 271 (850)
Q Consensus 192 ~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 271 (850)
.+..++..++.+|...|++++|+..|+...+..+ .+..++..+..++...++
T Consensus 120 ---------------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 120 ---------------------------NNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp ---------------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHH
T ss_pred ---------------------------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHH
Confidence 3335666777777888888888888887776432 356677777777777777
Q ss_pred HHHHH-HHHHHHHhCC
Q 003082 272 YMKSR-AIYEDLRSQN 286 (850)
Q Consensus 272 ~~~A~-~~~~~m~~~g 286 (850)
..++. ..|..|...|
T Consensus 172 ~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 172 ARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHC-------------
T ss_pred HHHHHHHHHHHHhccc
Confidence 76666 5555555443
No 156
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.97 E-value=0.00075 Score=69.77 Aligned_cols=183 Identities=9% Similarity=-0.042 Sum_probs=115.3
Q ss_pred hhHHHHHHHHH---hhcCChH-HHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhc-------CchhHHHHHHHHH
Q 003082 71 NDYYADMASKL---AKDGRLE-EFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIRE-------GRIDCVVGVLKKL 139 (850)
Q Consensus 71 ~~~~~~l~~~l---~~~g~~~-~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-------g~~~~A~~~l~~~ 139 (850)
+..|..+.+.+ .+.|.+. +|+.+++.++.. +|..++..... ..++...... ..+++++.+++.+
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~R---r~iL~~l~~~~~~~~~~~~l~~EL~~~~~~ 100 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCR---REVLQHLETEKSPEESAALVKAELGFLESC 100 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHH---HHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHH---HHHHHHhcccccchhhhHHHHHHHHHHHHH
Confidence 55555555443 4567766 899999999998 77777664332 2222221111 1267889999998
Q ss_pred HHcCCCCccccchhhhHHHHHHHHhhhhcC--cHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCC-hHHHHHHhhh
Q 003082 140 NELGVAPLELFDGSGFKLLKNECQRLLDSG--EVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPD-VNLAIRYACI 216 (850)
Q Consensus 140 ~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~ 216 (850)
+. ..|.. +.++..-...+...| .+++++.+++++++.. |.+..+|+.-.-++...|. +++++.++..
T Consensus 101 L~--~~PKn------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel~~~~~ 170 (331)
T 3dss_A 101 LR--VNPKS------YGTWHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDS 170 (331)
T ss_dssp HH--HCTTC------HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HH--hCCCC------HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 84 46655 666666666666667 4889999999998865 7777777777666666666 4666666544
Q ss_pred ----CCCCcchHHHHHHHHHhc--------------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003082 217 ----VPRADILFCNFVREFGKK--------------RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC 269 (850)
Q Consensus 217 ----~p~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 269 (850)
-|.+..+|+.....+.+. +.++++++.++..+...+ -|..+|+-+-..+.+.
T Consensus 171 ~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 171 LITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGAG 240 (331)
T ss_dssp HHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHSS
T ss_pred HHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Confidence 366666666655555444 346666777666665422 3555555444444443
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.95 E-value=5.8e-05 Score=70.10 Aligned_cols=94 Identities=13% Similarity=-0.017 Sum_probs=61.8
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHH
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVRE 230 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~ 230 (850)
...+...+..+...|++++|+..|++.+... |+....+..++.++...|++++|+..|+.+ |.+..++..+...
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4556666677778899999999998887765 666656666666666666666666655442 5555556666666
Q ss_pred HHhcCChHHHHHHHHHHHhC
Q 003082 231 FGKKRDLVSALRAYDASKKH 250 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~ 250 (850)
|...|++++|+..|++.++.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 66666666666666665553
No 158
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.95 E-value=6.5e-05 Score=66.06 Aligned_cols=90 Identities=11% Similarity=-0.026 Sum_probs=46.9
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHH
Q 003082 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFG 232 (850)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~ 232 (850)
.+...+..+...|++++|+..|++.+... |++...+..++.++...|++++|+..++.+ |.+..++..++..|.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34445556667788888888888777654 555444444444444444444444443331 333344444444444
Q ss_pred hcCChHHHHHHHHHHH
Q 003082 233 KKRDLVSALRAYDASK 248 (850)
Q Consensus 233 ~~g~~~~A~~~~~~m~ 248 (850)
..|++++|+..|++..
T Consensus 84 ~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 84 AVKEYASALETLDAAR 99 (126)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHH
Confidence 4444444444444443
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.93 E-value=9.5e-05 Score=65.27 Aligned_cols=105 Identities=13% Similarity=0.111 Sum_probs=74.8
Q ss_pred HhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHH
Q 003082 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (850)
Q Consensus 122 ~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (850)
.+.++|++++|++.|+++++ +.|+. ..++.+.+..+...|++++|++.+++.++.. |+....+..++
T Consensus 17 ~~~~~~~~~~A~~~y~~Al~--~~p~~------~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a--- 83 (127)
T 4gcn_A 17 AAYKQKDFEKAHVHYDKAIE--LDPSN------ITFYNNKAAVYFEEKKFAECVQFCEKAVEVG--RETRADYKLIA--- 83 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCHHHHH---
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCC------HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC--cccchhhHHHH---
Confidence 34588999999999999884 46664 4566777777888899999998888877643 33333233222
Q ss_pred HcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 003082 202 VNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRT 261 (850)
Q Consensus 202 ~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 261 (850)
.+|..++..|...|++++|++.|+..+.. .||..+...
T Consensus 84 --------------------~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 84 --------------------KAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp --------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred --------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 35677888899999999999999988774 355544433
No 160
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.92 E-value=0.00016 Score=76.10 Aligned_cols=131 Identities=12% Similarity=-0.044 Sum_probs=111.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccC----------------HhHHHHHHHHHHhcCCHHHHHHHH
Q 003082 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD----------------VFTYSTIVKVFADAKWWQMALKVK 386 (850)
Q Consensus 323 d~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d----------------~~ty~~li~~~~~~g~~~~A~~l~ 386 (850)
+...+..+...|.+.|++++|...|++..+. .|+ ...|..+..+|.+.|++++|+..|
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~------~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~ 219 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW------LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESC 219 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4567788888999999999999999998874 333 478999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHH-HHHHHHHhh
Q 003082 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA-FRLFRSWTL 461 (850)
Q Consensus 387 ~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A-~~l~~~m~~ 461 (850)
++.++.... +...|..+..+|...|++++|...|++.++.. +.+...+..+..++.+.|+.++| ..+|+.|..
T Consensus 220 ~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 220 NKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987543 78899999999999999999999999999864 44677888899999999999998 556666653
No 161
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.90 E-value=0.0025 Score=65.78 Aligned_cols=115 Identities=14% Similarity=0.055 Sum_probs=60.9
Q ss_pred hcCchh-HHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCc----------HHHHHHHHHHHHhCCCCCCCccc
Q 003082 125 REGRID-CVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGE----------VEMFVGLMEVLEEFRLPVKELDE 193 (850)
Q Consensus 125 ~~g~~~-~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~ 193 (850)
+.|.++ +|++++++++ .+.|+.. .++..-...+...++ +++++.+++.++... |.+..+
T Consensus 41 ~~~e~s~eaL~~t~~~L--~~nP~~y------taWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~--PKny~a 110 (331)
T 3dss_A 41 QAGELDESVLELTSQIL--GANPDFA------TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGT 110 (331)
T ss_dssp HTTCCSHHHHHHHHHHH--TTCTTCH------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHH
T ss_pred HcCCCCHHHHHHHHHHH--HHCchhH------HHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--CCCHHH
Confidence 566666 8999999999 7788863 333322222222222 567778887777654 666655
Q ss_pred HHHHHHHHHcCCC--hHHHHHHhhhC----CCCcchHHHHHHHHHhcCC-hHHHHHHHHHHHh
Q 003082 194 EFRIVQLCVNKPD--VNLAIRYACIV----PRADILFCNFVREFGKKRD-LVSALRAYDASKK 249 (850)
Q Consensus 194 ~~~l~~~~~~~~~--~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~ 249 (850)
|+.-...+...+. +++++.+++.+ |.+..+|+.-.-.+...|. ++++++.++.+++
T Consensus 111 W~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~ 173 (331)
T 3dss_A 111 WHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT 173 (331)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 6555444444432 34444433322 3444444444333444444 2444444444444
No 162
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.90 E-value=8.7e-05 Score=63.13 Aligned_cols=96 Identities=9% Similarity=0.021 Sum_probs=62.7
Q ss_pred CCcccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHH
Q 003082 189 KELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTI 262 (850)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l 262 (850)
+....+..++..+...|++++|+.+++. .|.+..++..++..|...|++++|+..|++..+... . +...+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~l 82 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE-DEYNKDVWAAK 82 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-CTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccchHHHHHHH
Confidence 3334444455555555555555554433 244456667777778888888888888887777532 3 46677777
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhC
Q 003082 263 IDVCGIC-GDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 263 i~~~~~~-g~~~~A~~~~~~m~~~ 285 (850)
..++.+. |++++|.+.|+.....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 7778888 8888888888777665
No 163
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.89 E-value=6.5e-05 Score=72.30 Aligned_cols=146 Identities=13% Similarity=0.005 Sum_probs=89.8
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhc
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKK 234 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~ 234 (850)
...+...+..+...|++++|+..|++.+... |............ ....+ ...++..+...|.+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~------~~~~~--------~~~~~~~la~~~~~~ 101 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQILLD------KKKNI--------EISCNLNLATCYNKN 101 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCHHHHH------HHHHH--------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchhhHHH------HHHHH--------HHHHHHHHHHHHHHh
Confidence 3445566667778899999999999988754 3221100000000 00000 015677899999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc-CHHHHHHHHHhh--cCChHHHH-H
Q 003082 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL-NIYVFNSLMNVN--AHDLKFTL-E 310 (850)
Q Consensus 235 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~--~~~~~~a~-~ 310 (850)
|++++|+..|+..++.. +.+..++..+..+|...|++++|+..|+...+. .| +...+..+-.++ .++..++. .
T Consensus 102 ~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~ 178 (198)
T 2fbn_A 102 KDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEARKKDKL 178 (198)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHC----
T ss_pred cCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998863 347788999999999999999999999998876 34 344444444432 23333333 4
Q ss_pred HHHHHHHcC
Q 003082 311 VYKNMQKLG 319 (850)
Q Consensus 311 l~~~m~~~g 319 (850)
.|..|...|
T Consensus 179 ~~~~~f~~~ 187 (198)
T 2fbn_A 179 TFGGMFDKG 187 (198)
T ss_dssp ---------
T ss_pred HHHHHhccc
Confidence 555554433
No 164
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.88 E-value=9e-05 Score=65.16 Aligned_cols=93 Identities=11% Similarity=0.021 Sum_probs=73.6
Q ss_pred ccHHHHHHHHHcCCChHHHHHHhhh----CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003082 192 DEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCG 267 (850)
Q Consensus 192 ~~~~~l~~~~~~~~~~~~A~~~~~~----~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 267 (850)
..+..++..+...|++++|+..|.. .|.+..++..++..|.+.|++++|+..|+..++..+ .+...|..+..++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence 3466677888888888888888765 377778888888888888888888888888887532 35677888888888
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 003082 268 ICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 268 ~~g~~~~A~~~~~~m~~~ 285 (850)
..|++++|...|++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 888888888888887654
No 165
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.87 E-value=7.1e-05 Score=66.12 Aligned_cols=68 Identities=6% Similarity=0.018 Sum_probs=46.9
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSS--PN----MYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 218 p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
|.+..+|+.++.+|.+.|++++|+..|+..++..+. ++ ..+|..+..++...|++++|++.|++....
T Consensus 39 p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 39 PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 444466777777777888888888877777653211 11 236777777888888888888888877654
No 166
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.85 E-value=4e-05 Score=67.10 Aligned_cols=94 Identities=6% Similarity=-0.082 Sum_probs=53.2
Q ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCCh
Q 003082 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDL 237 (850)
Q Consensus 158 l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~ 237 (850)
+...+..+.+.|++++|+..+++.++.. |+.... +..+..++...|++
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a------------------------------~~~lg~~~~~~g~~ 67 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEA------------------------------WRSLGLTQAENEKD 67 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHH------------------------------HHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHH------------------------------HHHHHHHHHHcCCH
Confidence 3344555667788888888888777654 555444 44455555555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 238 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
++|+..|++.++..+ .+...+..+..+|...|++++|+..|+...+
T Consensus 68 ~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 68 GLAIIALNHARMLDP-KDIAVHAALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555554321 2344555555555555555555555555543
No 167
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.85 E-value=0.00017 Score=61.89 Aligned_cols=96 Identities=13% Similarity=0.086 Sum_probs=58.2
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCC
Q 003082 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRD 236 (850)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~ 236 (850)
.+...+..+...|++++|+..+++..... |.+. ..+..++..|...|+
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~------------------------------~~~~~~a~~~~~~~~ 53 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNH------------------------------VLYSNRSAAYAKKGD 53 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH------------------------------HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcH------------------------------HHHHHHHHHHHhhcc
Confidence 34444555566788888888888776543 4333 445555556666666
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 237 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
+++|...|++..+..+ .+...+..+..++...|++++|...|+...+.
T Consensus 54 ~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 54 YQKAYEDGCKTVDLKP-DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 6666666666655421 24555666666666666666666666666554
No 168
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.83 E-value=0.00017 Score=66.92 Aligned_cols=106 Identities=7% Similarity=-0.095 Sum_probs=81.0
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+..++..+...|++++|+..|+++++. +|..... +......+...|++++|+..|+++++. .|+.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~------~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~-- 78 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIY------LSNRAAAYSASGQHEKAAEDAELATVV--DPKY-- 78 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHH------HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHH------HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCC--
Confidence 778889999999999999999999999988 4443222 223334566889999999999999954 6654
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEE 194 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 194 (850)
..++...+..+...|++++|+..|++.++.. |++...+
T Consensus 79 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~ 116 (164)
T 3sz7_A 79 ----SKAWSRLGLARFDMADYKGAKEAYEKGIEAE--GNGGSDA 116 (164)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--SSSCCHH
T ss_pred ----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCchHHH
Confidence 5566777777888999999999999888765 5554433
No 169
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.83 E-value=7.4e-05 Score=63.61 Aligned_cols=94 Identities=14% Similarity=-0.049 Sum_probs=80.3
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CC--CcchHHHHHHH
Q 003082 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PR--ADILFCNFVRE 230 (850)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~--~~~~~~~li~~ 230 (850)
.+...+..+...|++++|+..+++.++.. |.....+..++..+...|++++|+.+++.. |. ...++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 34445566778999999999999998765 677778889999999999999999988663 77 77889999999
Q ss_pred HHhc-CChHHHHHHHHHHHhCCC
Q 003082 231 FGKK-RDLVSALRAYDASKKHLS 252 (850)
Q Consensus 231 ~~~~-g~~~~A~~~~~~m~~~g~ 252 (850)
|.+. |++++|++.|+...+..+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999999988654
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=0.00031 Score=63.34 Aligned_cols=113 Identities=12% Similarity=-0.035 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+..++..+...|++++|+..|+++++.. |..... ...+......+...|++++|+..|+++.+. .|+.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~-- 98 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQ---AVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGD-- 98 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCC--
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHH---HHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccC--
Confidence 7788899999999999999999999999884 332111 122233344566899999999999999954 5654
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIV 198 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 198 (850)
...+...+..+...|++++|+..+++.+... |+....+..+.
T Consensus 99 ----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~ 140 (148)
T 2dba_A 99 ----VKALYRRSQALEKLGRLDQAVLDLQRCVSLE--PKNKVFQEALR 140 (148)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SSCHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHH
Confidence 4556666777788999999999999988765 55544444333
No 171
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.75 E-value=0.001 Score=56.74 Aligned_cols=98 Identities=18% Similarity=0.067 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003082 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (850)
Q Consensus 324 ~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ 403 (850)
...+..+...+...|++++|...|+..... .+.+...+..+...+...|++++|...+++..+.... +...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 77 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL-----DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSR 77 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHH
Confidence 456777788888899999999999888763 2336677888888888899999999999888876432 6778888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 003082 404 LINACANAGLVEQAMHLFEEMLQA 427 (850)
Q Consensus 404 li~~~~~~g~~~~A~~l~~~m~~~ 427 (850)
+...+...|++++|...|++..+.
T Consensus 78 ~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 78 KAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHc
Confidence 888899999999999999888765
No 172
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.72 E-value=0.00021 Score=64.67 Aligned_cols=108 Identities=13% Similarity=-0.046 Sum_probs=81.1
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCCh-h----hHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHc---
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNV-S----KFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL--- 142 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p-~----~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~--- 142 (850)
...+...+..+.+.|+|++|+..|+++++..++. . .... .....+.+....+...|++++|+..|+++++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~-~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAG-FDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhcc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 5667788999999999999999999999984330 0 1111 11224445555677999999999999999953
Q ss_pred --CCCCccccchhhhHHH----HHHHHhhhhcCcHHHHHHHHHHHHhCC
Q 003082 143 --GVAPLELFDGSGFKLL----KNECQRLLDSGEVEMFVGLMEVLEEFR 185 (850)
Q Consensus 143 --~~~p~~~~~~~~~~~l----~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (850)
.+.|+. ..++ .+.+..+...|++++|+..|++.++..
T Consensus 90 ~~e~~pd~------~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 90 RGELNQDE------GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HCCTTSTH------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cccCCCch------HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 227764 4455 778888889999999999999987654
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.72 E-value=0.00033 Score=61.57 Aligned_cols=96 Identities=9% Similarity=-0.029 Sum_probs=52.4
Q ss_pred HHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHH
Q 003082 160 NECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVS 239 (850)
Q Consensus 160 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~ 239 (850)
..+..+...|++++|+..++.++... |++... ..++..++..|.+.|++++
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~---------------------------~~~~~~lg~~~~~~~~~~~ 57 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYT---------------------------PNALYWLGESYYATRNFQL 57 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTH---------------------------HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCccc---------------------------HHHHHHHHHHHHHhccHHH
Confidence 34455567788888888888877654 443310 0234445555555555555
Q ss_pred HHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 240 ALRAYDASKKHLSSPN---MYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 240 A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
|+..|+...+..+ .+ ..++..+..++...|++++|...|+.+.+.
T Consensus 58 A~~~~~~~~~~~p-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 58 AEAQFRDLVSRYP-THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5555555554321 11 344555555555555555555555555543
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.71 E-value=0.00014 Score=63.44 Aligned_cols=95 Identities=14% Similarity=-0.048 Sum_probs=75.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh-
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV- 300 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~- 300 (850)
..+..++..+.+.|++++|+..|+..++..+ .+...|..+..++...|++++|+..|++..+... -+...+..+-.+
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~ 95 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSH 95 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 3466788889999999999999999998532 4788899999999999999999999999987632 134444444443
Q ss_pred -hcCChHHHHHHHHHHHHc
Q 003082 301 -NAHDLKFTLEVYKNMQKL 318 (850)
Q Consensus 301 -~~~~~~~a~~l~~~m~~~ 318 (850)
..|++++|+..|++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 457999999999998764
No 175
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.70 E-value=0.00011 Score=81.13 Aligned_cols=110 Identities=14% Similarity=0.047 Sum_probs=66.1
Q ss_pred ccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHh---------hhhHHHHHHHHHHHhhhcCchhHHHH
Q 003082 64 RRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFA---------SMLSLEMVASGIVKSIREGRIDCVVG 134 (850)
Q Consensus 64 ~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~---------~~~~~~~~~~~~~~~~~~g~~~~A~~ 134 (850)
...|.. ...+..++..+.+.|+|++|+..|+++++.. |.... .......+.+....+.+.|++++|+.
T Consensus 262 ~~~~~~-a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~ 338 (457)
T 1kt0_A 262 KEKLEQ-AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVE 338 (457)
T ss_dssp HHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 334444 6788899999999999999999999999873 32100 00111222333344556666666666
Q ss_pred HHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhC
Q 003082 135 VLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184 (850)
Q Consensus 135 ~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~ 184 (850)
.|+++++ +.|+. ..++...+..+...|++++|+..|++.++.
T Consensus 339 ~~~~al~--~~p~~------~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 339 CCDKALG--LDSAN------EKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHH--HSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHh--cCCcc------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 6666663 24433 344455555555566666666666665543
No 176
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.70 E-value=0.00099 Score=59.11 Aligned_cols=98 Identities=7% Similarity=-0.194 Sum_probs=68.2
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHh
Q 003082 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (850)
Q Consensus 221 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~ 300 (850)
...+..++..+...|++++|+..|+..+...+ .+...|..+..+|...|++++|...|+...+..
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------------- 73 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-------------- 73 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------------
Confidence 35666777777788888888888877776532 356677777777777788877777777665431
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 003082 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL 353 (850)
Q Consensus 301 ~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~ 353 (850)
+.+...+..+..+|...|++++|...|+...+.
T Consensus 74 --------------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 74 --------------------GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp --------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------------chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 224556667777777777777777777777664
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.69 E-value=0.00011 Score=64.60 Aligned_cols=97 Identities=8% Similarity=0.002 Sum_probs=60.3
Q ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCC
Q 003082 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRD 236 (850)
Q Consensus 157 ~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~ 236 (850)
.+...+..+...|++++|+..+++..... |... .++..++..|...|+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~------------------------------~~~~~la~~~~~~~~ 53 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD--PTNM------------------------------TYITNQAAVYFEKGD 53 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH------------------------------HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccH------------------------------HHHHHHHHHHHHhcc
Confidence 34444555666788888888887776543 3332 445556666666677
Q ss_pred hHHHHHHHHHHHhCCC--CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 237 LVSALRAYDASKKHLS--SPN----MYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 237 ~~~A~~~~~~m~~~g~--~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
+++|+..|+...+... .++ ..++..+..+|...|++++|...|+...+.
T Consensus 54 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 54 YNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 7777776666655321 111 556666667777777777777777776664
No 178
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.69 E-value=0.00033 Score=74.76 Aligned_cols=120 Identities=10% Similarity=0.012 Sum_probs=71.5
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhH----------hhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHH
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKF----------ASMLSLEMVASGIVKSIREGRIDCVVGVLKKLN 140 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~----------~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~ 140 (850)
...+..++..+.+.|++++|+..|+++++.. +... ........+.+....+.+.|++++|++.|++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 4567888999999999999999999999741 1100 011112333344445556677777777777776
Q ss_pred HcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHH
Q 003082 141 ELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (850)
Q Consensus 141 ~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (850)
.+.|+. ..++...+..+...|++++|+..|++.++.. |++...+..+..++.
T Consensus 301 --~~~p~~------~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~~~l~~~~~ 352 (370)
T 1ihg_A 301 --EIDPSN------TKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQ 352 (370)
T ss_dssp --TTCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred --HhCchh------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 345543 3445555555666677777777766666543 444333333333333
No 179
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.66 E-value=0.00061 Score=59.62 Aligned_cols=112 Identities=13% Similarity=0.117 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----
Q 003082 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV--TPN---- 397 (850)
Q Consensus 324 ~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~---- 397 (850)
...+..+...+...|++++|...|+...+. .+.+...+..+...|...|++++|...+++...... .++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 78 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL-----DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQI 78 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHH
Confidence 356677888888899999999999888763 234667788888888899999999999988876532 122
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003082 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (850)
Q Consensus 398 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~ 442 (850)
..+|..+...+.+.|++++|...|++..+. .|+......+...
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 667888888899999999999999998875 3565555544443
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.66 E-value=4.8e-05 Score=84.45 Aligned_cols=117 Identities=12% Similarity=-0.001 Sum_probs=73.8
Q ss_pred hhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHc
Q 003082 124 IREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVN 203 (850)
Q Consensus 124 ~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (850)
...|++++|++.|+++++. .|+. ..++.+.+..+.+.|++++|++.+++.++..
T Consensus 17 ~~~g~~~~A~~~~~~Al~~--~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------------------ 70 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIEL--NPSN------AIYYGNRSLAYLRTECYGYALGDATRAIELD------------------ 70 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHH--CTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC------------------
T ss_pred HHhCCHHHHHHHHHHHHHh--CCcc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------------------
Confidence 3566677777777666643 4443 3445555555666666666666666665543
Q ss_pred CCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHH
Q 003082 204 KPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDV--CGICGDYMKSRAIYED 281 (850)
Q Consensus 204 ~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~ 281 (850)
|.+..++..++.+|.+.|++++|++.|++..+..+ .+...+..+..+ +.+.|++++|++.+++
T Consensus 71 --------------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 71 --------------KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp --------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred --------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 33346777888889999999999999998887543 233455555555 7888999999999884
No 181
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.65 E-value=0.0013 Score=59.08 Aligned_cols=99 Identities=9% Similarity=-0.014 Sum_probs=83.3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003082 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD----VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397 (850)
Q Consensus 322 pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d----~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 397 (850)
.+...+..+...+...|++++|...|+...+ ..|+ ...|..+...|...|++++|...+++..+.... +
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~------~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~ 98 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG------LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-D 98 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT------SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-C
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-C
Confidence 4567788888899999999999999998876 4565 577888888899999999999999998876432 6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003082 398 TITWSSLINACANAGLVEQAMHLFEEMLQA 427 (850)
Q Consensus 398 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 427 (850)
...|..+..++...|++++|...|++..+.
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 778888889999999999999999998875
No 182
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.61 E-value=0.0014 Score=58.14 Aligned_cols=98 Identities=10% Similarity=-0.028 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003082 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (850)
Q Consensus 323 d~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~ 402 (850)
+...+..+...+...|++++|...|...... .+.+...|..+...|...|++++|...+++..+.... +...|.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 81 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHF 81 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh-----CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHH
Confidence 3445555555555555555555555555442 1223444555555555555555555555555543322 344555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 403 SLINACANAGLVEQAMHLFEEMLQ 426 (850)
Q Consensus 403 ~li~~~~~~g~~~~A~~l~~~m~~ 426 (850)
.+..++...|++++|...|++..+
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 555555555555555555555443
No 183
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.61 E-value=0.001 Score=75.11 Aligned_cols=169 Identities=8% Similarity=-0.083 Sum_probs=113.3
Q ss_pred cCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCc----------hhHHHHHHHHHHHcCCCCccccchh
Q 003082 84 DGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGR----------IDCVVGVLKKLNELGVAPLELFDGS 153 (850)
Q Consensus 84 ~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~----------~~~A~~~l~~~~~~~~~p~~~~~~~ 153 (850)
....++|+..++.++.. +|..++.... ...++. ..|+ +++++++++++++ ..|..
T Consensus 42 ~~~~eeal~~~~~~l~~--nP~~~taW~~---R~~~l~---~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~----- 106 (567)
T 1dce_A 42 GELDESVLELTSQILGA--NPDFATLWNC---RREVLQ---HLETEKSPEESAALVKAELGFLESCLR--VNPKS----- 106 (567)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHH---HHHHHH---HHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTC-----
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHH---HHHHHH---hcccccchhhhhhhHHHHHHHHHHHHH--hCCCC-----
Confidence 34456889999999998 7777666332 223332 2344 8999999999995 46765
Q ss_pred hhHHHHHHHHhhhhcC--cHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCC-ChHHHHHHhhhC----CCCcchHHH
Q 003082 154 GFKLLKNECQRLLDSG--EVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKP-DVNLAIRYACIV----PRADILFCN 226 (850)
Q Consensus 154 ~~~~l~~~~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~----p~~~~~~~~ 226 (850)
+.++...+..+.+.| +++++++.++++++.. |.+..+|+.-..++...| .++++++++..+ |.+..+|+.
T Consensus 107 -y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~ 183 (567)
T 1dce_A 107 -YGTWHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY 183 (567)
T ss_dssp -HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHH
T ss_pred -HHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHH
Confidence 777777777777888 7799999999999876 777777877777766666 667777766553 555566666
Q ss_pred HHHHHHhc--------------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003082 227 FVREFGKK--------------RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD 271 (850)
Q Consensus 227 li~~~~~~--------------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 271 (850)
....+.+. +.+++|++.++..+...+ -|..+|+.+-..+.+.++
T Consensus 184 r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 184 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCC
T ss_pred HHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCC
Confidence 55555542 345666666666655321 244555555555555444
No 184
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.58 E-value=0.00019 Score=75.64 Aligned_cols=110 Identities=15% Similarity=0.019 Sum_probs=59.2
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
...+..++..+.+.|++++|+..|++++.. .|.... +...|+++++...+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~--------------~~~~~~~~~~~~~l~------------- 229 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM--------------FQLYGKYQDMALAVK------------- 229 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH--------------HTCCHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh--------------hhhcccHHHHHHHHH-------------
Confidence 455666777777777777777777777766 333210 112344444332221
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhh
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYAC 215 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 215 (850)
..++.+++..+.+.|++++|+..+++.+... |++...++.++.+|...|++++|+..|+
T Consensus 230 ----~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~ 288 (338)
T 2if4_A 230 ----NPCHLNIAACLIKLKRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFR 288 (338)
T ss_dssp ----THHHHHHHHHHHTTTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1234445555666777777777777766543 4444444444444444444444444443
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.58 E-value=6.8e-05 Score=83.22 Aligned_cols=118 Identities=9% Similarity=-0.019 Sum_probs=83.1
Q ss_pred hhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHH
Q 003082 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRA 243 (850)
Q Consensus 164 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~ 243 (850)
.+.+.|++++|++.+++.++.. | .+..++..++..|.+.|++++|+..
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~--p------------------------------~~~~~~~~lg~~~~~~g~~~~A~~~ 62 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN--P------------------------------SNAIYYGNRSLAYLRTECYGYALGD 62 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC--T------------------------------TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC--C------------------------------ccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3446788888888888776543 3 3346788899999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-cCHHHHHHHHH--hhcCChHHHHHHHHH
Q 003082 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNIYVFNSLMN--VNAHDLKFTLEVYKN 314 (850)
Q Consensus 244 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd~~t~~~ll~--~~~~~~~~a~~l~~~ 314 (850)
|++.++..+ .+..+|..+..+|...|++++|++.|++..+.... ++.......+. ...+++++|++.+++
T Consensus 63 ~~~al~l~p-~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 63 ATRAIELDK-KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHSCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999998642 46788999999999999999999999999875322 33333333331 223678888888873
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.56 E-value=0.00065 Score=62.68 Aligned_cols=111 Identities=6% Similarity=-0.054 Sum_probs=77.4
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcC------ChhhH--h--hhhHHHHHHHHHHHhhhcCchhHHHHHHHHHH
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEG------NVSKF--A--SMLSLEMVASGIVKSIREGRIDCVVGVLKKLN 140 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~------~p~~~--~--~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~ 140 (850)
...+...+..+.+.|+|++|+..|+.++..-. .|... . .......+.+....+...|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 67788999999999999999999999988610 11100 0 11123344445556778888888888888888
Q ss_pred HcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCc
Q 003082 141 ELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKEL 191 (850)
Q Consensus 141 ~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 191 (850)
+. .|+. ..++...+..+...|++++|+..|++.+... |++.
T Consensus 91 ~~--~p~~------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--p~~~ 131 (162)
T 3rkv_A 91 KR--EETN------EKALFRRAKARIAAWKLDEAEEDLKLLLRNH--PAAA 131 (162)
T ss_dssp HH--STTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--GGGH
T ss_pred hc--CCcc------hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC--CCCH
Confidence 43 5654 4556666777778888888888888877654 5443
No 187
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.55 E-value=0.001 Score=60.61 Aligned_cols=138 Identities=14% Similarity=0.024 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCC-cccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----
Q 003082 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV-LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-PN---- 397 (850)
Q Consensus 324 ~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~-~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~---- 397 (850)
..++..+...+...|++++|...|++..+...... ...-..++..+...|...|++++|...+++..+.... ++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 34677888899999999999999998877533211 1111247888888999999999999999987653111 12
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 003082 398 TITWSSLINACANAGLVEQAMHLFEEMLQA----GCEP-NSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (850)
Q Consensus 398 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 461 (850)
...+..+...+...|++++|...+++..+. +..+ ...++..+...|...|++++|.+.+++...
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456788888999999999999999988753 2111 134677888899999999999999987654
No 188
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.54 E-value=0.00097 Score=58.42 Aligned_cols=96 Identities=9% Similarity=-0.054 Sum_probs=73.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc-C-HHHHH--
Q 003082 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNM---YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL-N-IYVFN-- 295 (850)
Q Consensus 223 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d-~~t~~-- 295 (850)
.+..++..+.+.|++++|+..|+.+.+..+. +. ..+..+..++.+.|++++|...|+...+..... . ...+.
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 4566788889999999999999999885432 23 578888899999999999999999998763221 1 22233
Q ss_pred HHHHhhcCChHHHHHHHHHHHHcC
Q 003082 296 SLMNVNAHDLKFTLEVYKNMQKLG 319 (850)
Q Consensus 296 ~ll~~~~~~~~~a~~l~~~m~~~g 319 (850)
..+....|++++|...|+.+.+..
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 333345689999999999998764
No 189
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.53 E-value=0.00016 Score=78.25 Aligned_cols=102 Identities=7% Similarity=-0.082 Sum_probs=80.6
Q ss_pred hcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHH
Q 003082 83 KDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNEC 162 (850)
Q Consensus 83 ~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~ 162 (850)
..|+|++|+.++++.++......+..++.....+.++...|..+|++++|+.+++++++....--...++.+...+.+++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45899999999999998765544455666678888888899999999999999999986521111123566677888899
Q ss_pred HhhhhcCcHHHHHHHHHHHHhC
Q 003082 163 QRLLDSGEVEMFVGLMEVLEEF 184 (850)
Q Consensus 163 ~~~~~~g~~~~A~~~~~~~~~~ 184 (850)
..|..+|++++|+.++++.++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999999999987653
No 190
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.50 E-value=0.0004 Score=76.63 Aligned_cols=112 Identities=12% Similarity=-0.000 Sum_probs=56.4
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhc
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKK 234 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~ 234 (850)
...+...+..+.+.|++++|+..|++.+... |....... +..... -+....+|+++..+|.+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~------------~~~~~~---~~~~~~~~~nla~~~~~~ 330 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSE------------KESKAS---ESFLLAAFLNLAMCYLKL 330 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCH------------HHHHHH---HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCCh------------HHHHHH---HHHHHHHHHHHHHHHHHh
Confidence 4455566667778888888888888877653 33310000 000000 000013444555555555
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 235 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
|++++|+..|+..++... .+...|..+..+|...|++++|+..|+...+
T Consensus 331 g~~~~A~~~~~~al~~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 331 REYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp TCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555555555554321 2444555555555555555555555555544
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.47 E-value=0.00034 Score=63.29 Aligned_cols=100 Identities=8% Similarity=-0.019 Sum_probs=66.1
Q ss_pred HhhhcCchhHHHHHHHHHHHcCCCCccc------cchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhC-----CCCCCC
Q 003082 122 KSIREGRIDCVVGVLKKLNELGVAPLEL------FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF-----RLPVKE 190 (850)
Q Consensus 122 ~~~~~g~~~~A~~~l~~~~~~~~~p~~~------~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~ 190 (850)
.+...|++++|+..|+++++ +.|+.. ..+.-..++.+.+..+.+.|++++|+..+++.++. ...|+.
T Consensus 20 ~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~ 97 (159)
T 2hr2_A 20 RQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 97 (159)
T ss_dssp HHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCch
Confidence 34578999999999999995 466521 01111227778888888999999999999988765 012443
Q ss_pred cccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003082 191 LDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKK 249 (850)
Q Consensus 191 ~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 249 (850)
...|. ..+++.+.++...|++++|+..|+..++
T Consensus 98 ~~A~~--------------------------~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 98 GKLWI--------------------------SAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHH--------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHH--------------------------HHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33330 0116666677777777777777776654
No 192
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.46 E-value=6.6e-05 Score=65.15 Aligned_cols=107 Identities=12% Similarity=0.009 Sum_probs=62.0
Q ss_pred cCcHHHHHHHHHHHHhCCCC-CCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 003082 168 SGEVEMFVGLMEVLEEFRLP-VKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDA 246 (850)
Q Consensus 168 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~ 246 (850)
.|++++|+..|++.++.+.. |+.. .++..++..|.+.|++++|+..|++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~------------------------------~~~~~lg~~~~~~~~~~~A~~~~~~ 52 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLA------------------------------ECYLGLGSTFRTLGEYRKAEAVLAN 52 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHH------------------------------HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHH------------------------------HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 57888889999888765311 2222 4555666667777777777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhhcCCh
Q 003082 247 SKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN-VTLNIYVFNSLMNVNAHDL 305 (850)
Q Consensus 247 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~~~~~~~ 305 (850)
.++..+ .+..++..+..++...|++++|+..|+...+.. -.|+...|...+..+.+.+
T Consensus 53 al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~~~~l 111 (117)
T 3k9i_A 53 GVKQFP-NHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYADKL 111 (117)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHHTTCT
T ss_pred HHHhCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 666432 345566666777777777777777776665542 1233444444554444433
No 193
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.44 E-value=0.00043 Score=73.86 Aligned_cols=113 Identities=14% Similarity=-0.059 Sum_probs=68.1
Q ss_pred HHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcC
Q 003082 156 KLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKR 235 (850)
Q Consensus 156 ~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g 235 (850)
..+...+..+.+.|++++|+..|++.++.. +... ....... ....-|....+|.++...|.+.|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~-----------~~~~~~~---~~~~~~~~~~~~~nla~~~~~~g 287 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR-----------AAAEDAD---GAKLQPVALSCVLNIGACKLKMS 287 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH-----------HHSCHHH---HGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc-----------cccChHH---HHHHHHHHHHHHHHHHHHHHhcc
Confidence 345556667778899999999998877521 0000 0000000 00011222356667777777777
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 236 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
++++|+..|++.++... .+..+|..+..+|...|++++|+..|++..+.
T Consensus 288 ~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 288 DWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp CHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 77777777777776432 35666777777777777777777777776654
No 194
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.43 E-value=0.00043 Score=63.92 Aligned_cols=114 Identities=10% Similarity=-0.061 Sum_probs=79.9
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHHHHhCC------CCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHH
Q 003082 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFR------LPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFV 228 (850)
Q Consensus 155 ~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li 228 (850)
...+...+..+.+.|++++|+..|.+.+..- ..|.+. . ....-|....++.++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~----------------~----~~~~~~~~~~~~~nla 70 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEP----------------E----WVELDRKNIPLYANMS 70 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSH----------------H----HHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHH----------------H----HHHHHHHHHHHHHHHH
Confidence 3445556667778999999999999877541 001110 0 0001123336778888
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH
Q 003082 229 REFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291 (850)
Q Consensus 229 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 291 (850)
.+|.+.|++++|+..++..++.. +.+...|..+..+|...|++++|...|+...+. .|+.
T Consensus 71 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 71 QCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred HHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 88899999999999998888753 246778888888899999999999999888776 4543
No 195
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.43 E-value=0.0003 Score=76.31 Aligned_cols=108 Identities=8% Similarity=-0.015 Sum_probs=84.1
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhh
Q 003082 76 DMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGF 155 (850)
Q Consensus 76 ~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~ 155 (850)
..+..+..+|+|++|+.+++++++......+..++.....+.++...|..+|++++|+.+++++++.-...-...++.+.
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 33556678899999999999999876444444466667888888888999999999999999998642111112356667
Q ss_pred HHHHHHHHhhhhcCcHHHHHHHHHHHHh
Q 003082 156 KLLKNECQRLLDSGEVEMFVGLMEVLEE 183 (850)
Q Consensus 156 ~~l~~~~~~~~~~g~~~~A~~~~~~~~~ 183 (850)
..+.+++..|..+|++++|+.++++.++
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 7888899999999999999999988764
No 196
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.42 E-value=0.00015 Score=62.76 Aligned_cols=89 Identities=7% Similarity=-0.170 Sum_probs=61.5
Q ss_pred hcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcC
Q 003082 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK 204 (850)
Q Consensus 125 ~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (850)
..|++++|+..|+++++ +.++ ++....++..++..+...|++++|+..+++.++.. |+..
T Consensus 2 ~~g~~~~A~~~~~~al~--~~~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~------------- 61 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIA--SGLQ---GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQ------------- 61 (117)
T ss_dssp -----CCCHHHHHHHHS--SCCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH-------------
T ss_pred CCCcHHHHHHHHHHHHH--cCCC---CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCch-------------
Confidence 46899999999999995 3221 12235667778888889999999999999988765 5443
Q ss_pred CChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003082 205 PDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH 250 (850)
Q Consensus 205 ~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 250 (850)
.++..++.+|.+.|++++|+..|++.+..
T Consensus 62 -----------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 62 -----------------ALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp -----------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45556666777777777777777766654
No 197
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.27 E-value=0.00058 Score=73.91 Aligned_cols=101 Identities=7% Similarity=-0.086 Sum_probs=73.5
Q ss_pred hcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcC
Q 003082 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK 204 (850)
Q Consensus 125 ~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (850)
..|++++|+.+|+++++.....-...++.+..++.+++..|..+|++++|+.++++.++.....-+ .
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG-------------~ 376 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYP-------------V 376 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC-------------S
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcC-------------C
Confidence 568999999999999875333333346677888888889999999999999999987653211101 1
Q ss_pred CChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003082 205 PDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKK 249 (850)
Q Consensus 205 ~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 249 (850)
..++ ...++++|+..|..+|++++|+.+|++.++
T Consensus 377 ~Hp~-----------~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 377 YSLN-----------VASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp SCHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChH-----------HHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 1111 126678889999999999999998887654
No 198
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.19 E-value=0.00048 Score=72.54 Aligned_cols=145 Identities=10% Similarity=-0.043 Sum_probs=82.4
Q ss_pred HHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcC
Q 003082 156 KLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKR 235 (850)
Q Consensus 156 ~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g 235 (850)
..+...+..+.+.|++++|+..|++.+... |+.. .+...+++.++...+.. .+|+++...|.+.|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~--------~~~~~~~~~~~~~~l~~-----~~~~nla~~~~~~g 244 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDF--------MFQLYGKYQDMALAVKN-----PCHLNIAACLIKLK 244 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHH--------HHTCCHHHHHHHHHHHT-----HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccch--------hhhhcccHHHHHHHHHH-----HHHHHHHHHHHHcC
Confidence 345555666778888888888888877643 3221 12233444444433321 47888999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH-HHHHHHHHh---hcCChHHHHHH
Q 003082 236 DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI-YVFNSLMNV---NAHDLKFTLEV 311 (850)
Q Consensus 236 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~~---~~~~~~~a~~l 311 (850)
++++|+..|+..++.. +.+...|..+..+|...|++++|+..|+...+. .|+. ..+..+-.. ..+..+.+..+
T Consensus 245 ~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 245 RYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988753 247788999999999999999999999988754 3432 333333332 23466677888
Q ss_pred HHHHHHc
Q 003082 312 YKNMQKL 318 (850)
Q Consensus 312 ~~~m~~~ 318 (850)
|..|...
T Consensus 322 ~~~~l~~ 328 (338)
T 2if4_A 322 YKGIFKG 328 (338)
T ss_dssp -------
T ss_pred HHHhhCC
Confidence 8888754
No 199
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.16 E-value=0.0017 Score=70.47 Aligned_cols=106 Identities=8% Similarity=-0.081 Sum_probs=76.4
Q ss_pred HHHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHH
Q 003082 120 IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ 199 (850)
Q Consensus 120 ~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (850)
+..+..+|++++|++.++++++.....-...++.+..++.+++..|..+|++++|+.++++.+......-+.
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~-------- 365 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG-------- 365 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS--------
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC--------
Confidence 445568899999999999998653333334466778888888888999999999999999876532111010
Q ss_pred HHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003082 200 LCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKK 249 (850)
Q Consensus 200 ~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 249 (850)
..++ ...++++|+..|..+|++++|+.+|++..+
T Consensus 366 -----~Hp~-----------~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 366 -----SHPV-----------RGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp -----SCHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----CChH-----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 1111 126678888999999999999988887654
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.00053 Score=58.22 Aligned_cols=88 Identities=13% Similarity=0.094 Sum_probs=59.8
Q ss_pred HHhhhcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCC------cccH
Q 003082 121 VKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKE------LDEE 194 (850)
Q Consensus 121 ~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~ 194 (850)
..+...|++++|+..|+++++. .|+. ..++.+.+..+...|++++|+..+++.+... |+. ...+
T Consensus 12 ~~~~~~~~~~~A~~~~~~al~~--~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 12 NSLFKQGLYREAVHCYDQLITA--QPQN------PVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHH--CTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHHHH
Confidence 3456889999999999999854 5654 4556667777888899999999999988764 554 3344
Q ss_pred HHHHHHHHcCCChHHHHHHhhhCC
Q 003082 195 FRIVQLCVNKPDVNLAIRYACIVP 218 (850)
Q Consensus 195 ~~l~~~~~~~~~~~~A~~~~~~~p 218 (850)
..++.++...|+++.|+..++.+|
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHhHhhhHhHHHHhH
Confidence 455555555555555554444443
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.00 E-value=0.00052 Score=61.97 Aligned_cols=108 Identities=6% Similarity=-0.070 Sum_probs=60.0
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 003082 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDA 246 (850)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~ 246 (850)
+.+++++|++.++..++.. |++...+..++.++.+.++++.+.... +.+++|+..|++
T Consensus 14 r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al--------------------~~~~eAi~~le~ 71 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAK--------------------QMIQEAITKFEE 71 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHH--------------------HHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhH--------------------hHHHHHHHHHHH
Confidence 3478899999999888776 777777777777776665543111100 123455555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 003082 247 SKKHLSSPNMYICRTIIDVCGICG-----------DYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299 (850)
Q Consensus 247 m~~~g~~p~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 299 (850)
.++..+ .+..+|..+..+|...| ++++|++.|++..+. .|+...|...+.
T Consensus 72 AL~ldP-~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 72 ALLIDP-KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHhCc-CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 554321 13444555555554442 555566655555544 444444444443
No 202
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=96.99 E-value=0.00043 Score=55.12 Aligned_cols=63 Identities=25% Similarity=0.285 Sum_probs=41.3
Q ss_pred HHHhhccchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEecCCcccccCcccchHHHHHHHHHhhh
Q 003082 713 AIDLRGLTKVEARIIVLAVLRMMKENYSLGVPVKDDLMIVLGPNKVNKIQAKHDLEVKDAITKLLQD 779 (850)
Q Consensus 713 ~~~l~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~i~~g~gk~s~~~g~~~~~v~~~v~~~l~~ 779 (850)
.+||||++..+|...+..++.+.......... ...+.||||.|+||.. | .+.+|.+|.+.|.+
T Consensus 2 ~lDLHGl~v~eA~~~l~~~l~~~~~~~~~~~g-~~~v~II~GkG~hS~~-g--~~~Lk~~V~~~L~~ 64 (82)
T 3fau_A 2 SLDLHGLHVDEALEHLMRVLEKKTEEFKQNGG-KPYLSVITGRGNHSQG-G--VARIKPAVIKYLIS 64 (82)
T ss_dssp CEECTTSCHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEECCC------------CHHHHHHHHHHH
T ss_pred eEECCCCcHHHHHHHHHHHHHHHHHHhhccCC-ceEEEEEECCCCCCCC-C--cchHHHHHHHHHHh
Confidence 36899999999999988888766542221111 2358899999999863 4 26799999999997
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.96 E-value=0.0015 Score=56.12 Aligned_cols=75 Identities=9% Similarity=0.111 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 003082 173 MFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASK 248 (850)
Q Consensus 173 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 248 (850)
+|+..|++.++.. |++...+..++..+...|++++|+.+++.+ |....++..++..|...|++++|+..|+...
T Consensus 3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3555666665543 555555555555555555555555544332 4444445555555555555555555555444
Q ss_pred h
Q 003082 249 K 249 (850)
Q Consensus 249 ~ 249 (850)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 3
No 204
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.92 E-value=0.012 Score=66.22 Aligned_cols=175 Identities=14% Similarity=0.003 Sum_probs=100.4
Q ss_pred CchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCc----------HHHHHHHHHHHHhCCCCCCCcccHHH
Q 003082 127 GRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGE----------VEMFVGLMEVLEEFRLPVKELDEEFR 196 (850)
Q Consensus 127 g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~ 196 (850)
...++|++.+++++ .+.|+. +.++......+...|+ ++++++.++.+++.. |++..+|+.
T Consensus 43 ~~~eeal~~~~~~l--~~nP~~------~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~h 112 (567)
T 1dce_A 43 ELDESVLELTSQIL--GANPDF------ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHH 112 (567)
T ss_dssp CCSHHHHHHHHHHH--HHCTTC------HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred CCCHHHHHHHHHHH--HHCchh------HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 34568899999999 457876 4555544444445555 888888888888765 666655555
Q ss_pred HHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHH
Q 003082 197 IVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG-DYMKS 275 (850)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A 275 (850)
-+.++.+.+.+ +++++++.++.+.+... .|..+|+.-..++.+.| .++++
T Consensus 113 R~w~l~~l~~~----------------------------~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~e 163 (567)
T 1dce_A 113 RCWLLSRLPEP----------------------------NWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEE 163 (567)
T ss_dssp HHHHHHTCSSC----------------------------CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHcccc----------------------------cHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHH
Confidence 54444444411 34555555555555322 34445555544455555 55555
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHhh----------------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003082 276 RAIYEDLRSQNVTLNIYVFNSLMNVN----------------AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339 (850)
Q Consensus 276 ~~~~~~m~~~g~~pd~~t~~~ll~~~----------------~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~ 339 (850)
++.++++.+..+ -|...|+..-.+. .+.++++++.+++..... +-|...|+.+-..+.+.++
T Consensus 164 l~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 164 LAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHCC-CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 555555544321 1223333222210 023566777777776654 4477788887777777777
Q ss_pred hHH
Q 003082 340 TVL 342 (850)
Q Consensus 340 ~~~ 342 (850)
.++
T Consensus 242 ~~~ 244 (567)
T 1dce_A 242 HDV 244 (567)
T ss_dssp CSC
T ss_pred ccc
Confidence 544
No 205
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=96.89 E-value=0.001 Score=54.80 Aligned_cols=64 Identities=23% Similarity=0.242 Sum_probs=49.7
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEecCCcccccCcccchHHHHHHHHHhhh
Q 003082 712 LAIDLRGLTKVEARIIVLAVLRMMKENYSLGVPVKDDLMIVLGPNKVNKIQAKHDLEVKDAITKLLQD 779 (850)
Q Consensus 712 ~~~~l~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~i~~g~gk~s~~~g~~~~~v~~~v~~~l~~ 779 (850)
..+||||+...+|...+..++.+....+...... ..+.||||.|+||.... +.||.+|.+.|.+
T Consensus 9 ~~lDLHGl~v~eA~~~L~~~L~~~~~~~~~~~g~-~~v~IIhGkG~hS~~g~---~~Lk~~V~~~L~~ 72 (96)
T 2d9i_A 9 NVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGK-PYLSVITGRGNHSQGGV---ARIKPAVIKYLIS 72 (96)
T ss_dssp CEEECTTSCHHHHHHHHHHHHHHHHHHHHHTTCC-SEEEEECCCSGGGTTCT---TCHHHHHHHHHHH
T ss_pred CeEECCCCCHHHHHHHHHHHHHHHHHHHHhhCCC-eEEEEEECcCCCCCCCc---chHHHHHHHHHhh
Confidence 4689999999999999988888765432211112 36899999999997543 6799999999998
No 206
>2vkc_A NEDD4-binding protein 2; human BCL3 binding protein, alternative splicing, homologous recombination, mismatch repair, small MUTS related; NMR {Homo sapiens}
Probab=96.84 E-value=0.0033 Score=55.31 Aligned_cols=65 Identities=23% Similarity=0.242 Sum_probs=50.3
Q ss_pred hHHHHhhccchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEecCCcccccCcccchHHHHHHHHHhhh
Q 003082 711 NLAIDLRGLTKVEARIIVLAVLRMMKENYSLGVPVKDDLMIVLGPNKVNKIQAKHDLEVKDAITKLLQD 779 (850)
Q Consensus 711 ~~~~~l~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~i~~g~gk~s~~~g~~~~~v~~~v~~~l~~ 779 (850)
...+||||+...+|...+..+|......+...... ..+.||||-|+||.... +.||.+|.+.|.+
T Consensus 53 ~~~LDLHGl~v~EA~~~L~~fL~~a~~~~~~~~g~-~~v~IIhGkG~hS~~g~---~~Lk~~V~~~L~~ 117 (135)
T 2vkc_A 53 QNVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGK-PYLSVITGRGNHSQGGV---ARIKPAVIKYLIS 117 (135)
T ss_dssp GTEEECTTCCHHHHHHHHHHHHHHHHHHHHHTCCC-SEEEEECCSCSSSCCSC---CTHHHHHHHHHHT
T ss_pred CceEEeCCCcHHHHHHHHHHHHHHHHHHHHhhCCC-eEEEEEECCCcCCCCCC---chHHHHHHHHHhc
Confidence 45789999999999999988887765432211222 36899999999997543 6799999999987
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.81 E-value=0.017 Score=51.44 Aligned_cols=110 Identities=8% Similarity=-0.041 Sum_probs=84.4
Q ss_pred CcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhC--CCCcchHHHHHHHHHh----cCChHHHHH
Q 003082 169 GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV--PRADILFCNFVREFGK----KRDLVSALR 242 (850)
Q Consensus 169 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--p~~~~~~~~li~~~~~----~g~~~~A~~ 242 (850)
+++++|++.|++..+.+. +... ++..|...+.+++|+++|++. ..+..+++.|...|.. .+++++|+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~----~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE----MFGC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC----TTHH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCC----Hhhh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 578899999999888762 2223 777777777888888888764 3455777888888887 788888988
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 003082 243 AYDASKKHLSSPNMYICRTIIDVCGI----CGDYMKSRAIYEDLRSQNV 287 (850)
Q Consensus 243 ~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~ 287 (850)
.|+...+.| +...+..|...|.. .+++++|...|+...+.|.
T Consensus 83 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 888888764 56677788888877 7788888888888777653
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.62 E-value=0.0031 Score=52.48 Aligned_cols=27 Identities=7% Similarity=0.129 Sum_probs=12.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHH
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASK 248 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 248 (850)
.+|..+..+|...|++++|+..|++.+
T Consensus 42 ~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 42 GTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444455555544444443
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.62 E-value=0.0063 Score=50.59 Aligned_cols=66 Identities=9% Similarity=-0.010 Sum_probs=56.8
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 218 p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
|.+..++..++..|.+.|++++|+..|+..++..+ .+...|..+..+|...|++++|++.|++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45567888999999999999999999999988643 3567899999999999999999999998764
No 210
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.54 E-value=0.0056 Score=52.31 Aligned_cols=77 Identities=6% Similarity=-0.109 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHH
Q 003082 130 DCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNL 209 (850)
Q Consensus 130 ~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 209 (850)
++|+..|+++. ...|+. ...+...+..+...|++++|+..+++.+... |+....+..++..+...|++++
T Consensus 2 ~~a~~~~~~al--~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~ 71 (115)
T 2kat_A 2 QAITERLEAML--AQGTDN------MLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAG 71 (115)
T ss_dssp CCHHHHHHHHH--TTTCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred hHHHHHHHHHH--HhCCCc------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHH
Confidence 46788899988 557765 4566677777889999999999999998865 7778889999999999999999
Q ss_pred HHHHhhh
Q 003082 210 AIRYACI 216 (850)
Q Consensus 210 A~~~~~~ 216 (850)
|+..++.
T Consensus 72 A~~~~~~ 78 (115)
T 2kat_A 72 ARQAWES 78 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998765
No 211
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.41 E-value=0.041 Score=44.00 Aligned_cols=79 Identities=16% Similarity=0.203 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003082 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443 (850)
Q Consensus 364 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~ 443 (850)
..|..+...+...|++++|...|++..+.... +...+..+...+.+.|++++|...|++..+.. +.+...+..+...+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34455555555666666666666665544321 45555666666666666666666666665542 22344444444444
Q ss_pred H
Q 003082 444 V 444 (850)
Q Consensus 444 ~ 444 (850)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 212
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.017 Score=48.42 Aligned_cols=89 Identities=13% Similarity=0.076 Sum_probs=59.0
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-------HH
Q 003082 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN-------SQ 434 (850)
Q Consensus 362 d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-------~~ 434 (850)
+...|..+...+...|++++|...|++..+.... +...|..+..++.+.|++++|+..|++..+. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 3445666677777788888888888877765432 6677778888888888888888888888764 343 33
Q ss_pred HHHHHHHHHHHhCCHHHHH
Q 003082 435 CCNILLQACVEACQFDRAF 453 (850)
Q Consensus 435 ~~~~ll~~~~~~g~~~~A~ 453 (850)
.+..+..++...|+.+.|.
T Consensus 80 ~~~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHHHHhHhhhH
Confidence 4444444555555444443
No 213
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.29 E-value=0.1 Score=46.11 Aligned_cols=110 Identities=15% Similarity=-0.009 Sum_probs=59.3
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHh----cCCH
Q 003082 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD----AKWW 379 (850)
Q Consensus 304 ~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~----~g~~ 379 (850)
+.++|++.|++..+.| .++.. |-..|...+.+++|.+.|++..+. -+...+..|-..|.. .+++
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-------g~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL-------NSGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHCSSSCCCH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHcCCCCCccH
Confidence 4445555555555554 22222 444444445555566666555441 244455555555555 5566
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcC
Q 003082 380 QMALKVKEDMLSAGVTPNTITWSSLINACAN----AGLVEQAMHLFEEMLQAG 428 (850)
Q Consensus 380 ~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g 428 (850)
++|+..|++..+.| +...+..|...|.. .++.++|..+|++..+.|
T Consensus 78 ~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 78 RKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666666665554 45555555555555 556666666666666554
No 214
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.24 E-value=0.05 Score=43.50 Aligned_cols=83 Identities=16% Similarity=0.080 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003082 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (850)
Q Consensus 323 d~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~ 402 (850)
+...+..+...+...|++++|...|++..+. .+.+...+..+...|...|++++|...|++..+.... +...+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~ 81 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQ 81 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHH
Confidence 3556777888889999999999999988773 2335677888888999999999999999998876432 566676
Q ss_pred HHHHHHHHc
Q 003082 403 SLINACANA 411 (850)
Q Consensus 403 ~li~~~~~~ 411 (850)
.+...+.+.
T Consensus 82 ~l~~~~~~~ 90 (91)
T 1na3_A 82 NLGNAKQKQ 90 (91)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666666544
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.89 E-value=0.071 Score=55.21 Aligned_cols=129 Identities=9% Similarity=-0.064 Sum_probs=66.4
Q ss_pred hhhHHHHHHHHhhhh--cCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHc----CCCh-------HHHHHHh---hh
Q 003082 153 SGFKLLKNECQRLLD--SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVN----KPDV-------NLAIRYA---CI 216 (850)
Q Consensus 153 ~~~~~l~~~~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~-------~~A~~~~---~~ 216 (850)
.+++.++.+-..+.+ .....+|+.+|++.++.. |+....+..+..+|.- .+.. ..+.+.. ..
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~ 272 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 272 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhccc
Confidence 457776655433322 344588999999998865 7766555544444421 0000 0111111 11
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 217 ~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
.|.+..++..+...+...|++++|...+++++... |+...|..+...+.-.|++++|.+.|++....
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 24444444444444444555666665555555543 45445555555555555555555555555443
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.77 E-value=0.19 Score=51.98 Aligned_cols=162 Identities=16% Similarity=0.111 Sum_probs=88.3
Q ss_pred hHHHHHHhhhCCCCcchHHHHHHHHH--hcC---ChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003082 207 VNLAIRYACIVPRADILFCNFVREFG--KKR---DLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYE 280 (850)
Q Consensus 207 ~~~A~~~~~~~p~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 280 (850)
..++.+.....|.+..+|...+.+.. ..+ ...+|+.+|++.++. .| ....|..+.-+|... .
T Consensus 180 ~~e~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~----------~ 247 (372)
T 3ly7_A 180 QRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVR----------H 247 (372)
T ss_dssp HHHHHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH----------H
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHH----------h
Confidence 33444455556777777776554433 333 357899999999885 34 345555555444310 0
Q ss_pred HHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcc
Q 003082 281 DLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK 360 (850)
Q Consensus 281 ~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~ 360 (850)
..+ ..+...... ...+.+....+ ..-+.+..+|..+...+...|++++|...+++... +.
T Consensus 248 ---~~~-~~~~~~~~~--------l~~a~~a~~a~--~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~------Ln 307 (372)
T 3ly7_A 248 ---SQH-PLDEKQLAA--------LNTEIDNIVTL--PELNNLSIIYQIKAVSALVKGKTDESYQAINTGID------LE 307 (372)
T ss_dssp ---HHS-CCCHHHHHH--------HHHHHHHHHTC--GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------HC
T ss_pred ---ccC-CCchhhHHH--------HHHHHHHHHhc--ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh------cC
Confidence 000 000000000 01111110001 11245666676666666666777777777777776 34
Q ss_pred cCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003082 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (850)
Q Consensus 361 ~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~ 402 (850)
|+...|..+-..+.-.|++++|.+.|++.... .|...||.
T Consensus 308 ~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 308 MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 66667777777777777777777777777765 34555544
No 217
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=95.68 E-value=0.041 Score=49.52 Aligned_cols=100 Identities=13% Similarity=-0.004 Sum_probs=69.6
Q ss_pred HHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003082 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW----------WQMALKVKEDMLSAGVTPNTITWSSL 404 (850)
Q Consensus 335 ~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~ty~~l 404 (850)
.+.+.+++|.+.++...+. -+.+...|..+-.++...++ +++|+..|++.++.... +...|..+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l-----~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~L 86 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS-----NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCI 86 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHH
Confidence 3445667777777776663 13355666666666666654 45888888888876544 57788888
Q ss_pred HHHHHHcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003082 405 INACANAG-----------LVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (850)
Q Consensus 405 i~~~~~~g-----------~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~ 442 (850)
..+|...| ++++|+..|++.++. .|+...|...+..
T Consensus 87 G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 87 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 88887764 899999999999885 6777666555544
No 218
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.45 E-value=0.15 Score=50.61 Aligned_cols=53 Identities=6% Similarity=-0.052 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHH-hhhcC--------------chhHHHHHHHHHHHc
Q 003082 88 EEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVK-SIREG--------------RIDCVVGVLKKLNEL 142 (850)
Q Consensus 88 ~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~g--------------~~~~A~~~l~~~~~~ 142 (850)
...+.+++.++.. +|.+-..+.....+...+.. ++... .+..|..+|.+..+.
T Consensus 49 P~~Lk~~e~Ll~~--~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y 116 (301)
T 3u64_A 49 PLVLKVYEALHLQ--NPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARY 116 (301)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHH
Confidence 3456677777777 67766565555555444433 33322 355677777776643
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.14 E-value=0.017 Score=47.46 Aligned_cols=58 Identities=16% Similarity=0.200 Sum_probs=39.9
Q ss_pred HHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcc-hHHHHHHHHHhcCChHHH
Q 003082 162 CQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADI-LFCNFVREFGKKRDLVSA 240 (850)
Q Consensus 162 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~-~~~~li~~~~~~g~~~~A 240 (850)
+..+...|++++|+..+++.++.. |++ .. ++..++..|...|++++|
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~--p~~------------------------------~~~~~~~lg~~~~~~~~~~~A 54 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE--PVG------------------------------KDEAYYLMGNAYRKLGDWQKA 54 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--SST------------------------------HHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCc------------------------------HHHHHHHHHHHHHHcCCHHHH
Confidence 334556788888888888777653 433 24 566677777777888888
Q ss_pred HHHHHHHHhCC
Q 003082 241 LRAYDASKKHL 251 (850)
Q Consensus 241 ~~~~~~m~~~g 251 (850)
+..|++.++..
T Consensus 55 ~~~~~~al~~~ 65 (99)
T 2kc7_A 55 LNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 88887777654
No 220
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.98 E-value=0.2 Score=40.59 Aligned_cols=71 Identities=13% Similarity=0.046 Sum_probs=53.6
Q ss_pred CCcchhhHHHHHHHHHhhcCC---hHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHc
Q 003082 66 DLSSRNDYYADMASKLAKDGR---LEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (850)
Q Consensus 66 ~p~~~~~~~~~l~~~l~~~g~---~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~ 142 (850)
+|++ +..+..++..+...+. .++|..++++.++. +|.....+..+ + ..+...|++++|+..|++++
T Consensus 2 ~p~~-~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~l---g---~~~~~~g~y~~Ai~~w~~~l-- 70 (93)
T 3bee_A 2 NAVT-ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLI---A---NDHFISFRFQEAIDTWVLLL-- 70 (93)
T ss_dssp CCCC-HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHH---H---HHHHHTTCHHHHHHHHHHHH--
T ss_pred CCCC-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHH---H---HHHHHcCCHHHHHHHHHHHH--
Confidence 3444 7888888888865544 79999999999999 77765554432 2 23458999999999999999
Q ss_pred CCCCc
Q 003082 143 GVAPL 147 (850)
Q Consensus 143 ~~~p~ 147 (850)
...|.
T Consensus 71 ~~~p~ 75 (93)
T 3bee_A 71 DSNDP 75 (93)
T ss_dssp TCCCT
T ss_pred hhCCC
Confidence 44565
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.98 E-value=0.23 Score=58.82 Aligned_cols=152 Identities=13% Similarity=0.080 Sum_probs=86.6
Q ss_pred HhcCChHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHH
Q 003082 232 GKKRDLVSALR-AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE 310 (850)
Q Consensus 232 ~~~g~~~~A~~-~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~ 310 (850)
...+++++|.+ ++.. + ++......++..+.+.|.+++|+++.++-. ...-+....++++.|++
T Consensus 610 ~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~----------~~f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPDQD----------QKFELALKVGQLTLARD 673 (814)
T ss_dssp HHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH----------HHHHHHHHHTCHHHHHH
T ss_pred HHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCCcc----------hheehhhhcCCHHHHHH
Confidence 34567777765 3311 1 112223666666777777777776653211 11223344567777766
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003082 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (850)
Q Consensus 311 l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~ 390 (850)
+.+.+ .+...|..|...+.+.|+++.|.+.|..+.. |..+...|...|+.+...++-+...
T Consensus 674 ~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-------------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 674 LLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-------------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-------------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-------------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 65332 3677888888888888998888888887643 3445555555666666555554444
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003082 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424 (850)
Q Consensus 391 ~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m 424 (850)
..|- ++.-..+|.+.|++++|++++.++
T Consensus 735 ~~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 735 TTGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4331 233333445555666655555443
No 222
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.79 E-value=0.084 Score=43.11 Aligned_cols=60 Identities=17% Similarity=0.155 Sum_probs=51.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003082 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMY-ICRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (850)
Q Consensus 226 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g 286 (850)
..+..+.+.|++++|+..|+...+..+ .+.. .|..+..+|...|++++|+..|+...+..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456778889999999999999988532 3567 89999999999999999999999988763
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.67 E-value=2.5 Score=49.72 Aligned_cols=98 Identities=11% Similarity=-0.012 Sum_probs=65.9
Q ss_pred hhcCcHHHHHH-HHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 003082 166 LDSGEVEMFVG-LMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAY 244 (850)
Q Consensus 166 ~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~ 244 (850)
...+++++|.+ ++..+ + +......+++.+...|.+++|+.+.+. . ..-.......|++++|.++.
T Consensus 610 ~~~~~~~~a~~~~l~~i------~-~~~~~~~~~~~l~~~~~~~~a~~~~~~----~---~~~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------E-GKDSLTKIARFLEGQEYYEEALNISPD----Q---DQKFELALKVGQLTLARDLL 675 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------C-CHHHHHHHHHHHHHTTCHHHHHHHCCC----H---HHHHHHHHHHTCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHhcC------C-chHHHHHHHHHHHhCCChHHheecCCC----c---chheehhhhcCCHHHHHHHH
Confidence 34688888877 54211 1 011125566777788888888876632 1 11233456778999998875
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003082 245 DASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (850)
Q Consensus 245 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (850)
+.+ .+...|..+...+.+.|+++.|.+.|..+.
T Consensus 676 ~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 676 TDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp TTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred Hhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 432 467789999999999999999999998764
No 224
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=93.99 E-value=0.054 Score=47.31 Aligned_cols=64 Identities=19% Similarity=0.292 Sum_probs=49.6
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEecCCcccccCcccchHHHHHHHHHhhhcccceEe
Q 003082 712 LAIDLRGLTKVEARIIVLAVLRMMKENYSLGVPVKDDLMIVLGPNKVNKIQAKHDLEVKDAITKLLQDDLGLKVF 786 (850)
Q Consensus 712 ~~~~l~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~i~~g~gk~s~~~g~~~~~v~~~v~~~l~~~~~~~~~ 786 (850)
-.+||||+...+|...+..++..-... |. ..+.||+|.|.+|.... +.||.+|.+.|.. .+.|.
T Consensus 48 ~~LDLHG~~~~EA~~~L~~fL~~a~~~---g~---r~V~IIHGKG~gs~~~~---~vLk~~V~~wL~~--~~~V~ 111 (137)
T 3qd7_X 48 ASLNLLRQPVEECRKMVFSFIQQALAD---GL---RNVLIIHGKGRDDKSHA---NIVRSYVARWLTE--FDDVQ 111 (137)
T ss_dssp GEEECTTCCHHHHHHHHHHHHHHHHHT---TC---SEEEEECCCCSSTTSHH---HHHHHHHHHHHHT--STTEE
T ss_pred eEEECCCCCHHHHHHHHHHHHHHHHHC---CC---CEEEEEECCCCCCCCch---HHHHHHHHHHHhc--CCcee
Confidence 368999999999998888877655443 43 35889999999986433 7899999999998 34444
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.75 E-value=2.8 Score=41.54 Aligned_cols=92 Identities=14% Similarity=0.064 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHc-----CChHHHHHHHHHHHHhhhcCCccc--CHhHHHHHHHHHH
Q 003082 305 LKFTLEVYKNMQKLGVMAD---MASYNILLKACCLA-----GNTVLAQEIYGEVKHLEAKGVLKL--DVFTYSTIVKVFA 374 (850)
Q Consensus 305 ~~~a~~l~~~m~~~g~~pd---~~t~~~Ll~~~~~~-----g~~~~A~~i~~~m~~~~~~g~~~~--d~~ty~~li~~~~ 374 (850)
...|..++++.++. .|+ ...|..|...|.+. |+.++|.+.|++..+ +.| +..++......++
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~------LnP~~~id~~v~YA~~l~ 250 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR------YCSAHDPDHHITYADALC 250 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH------HCCTTCSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH------hCCCCCchHHHHHHHHHH
Confidence 45567777777665 355 56788888888884 899999999999888 445 3667777778888
Q ss_pred hc-CCHHHHHHHHHHHHHCCCC--CCHHHHHHH
Q 003082 375 DA-KWWQMALKVKEDMLSAGVT--PNTITWSSL 404 (850)
Q Consensus 375 ~~-g~~~~A~~l~~~m~~~g~~--p~~~ty~~l 404 (850)
.. |+.+++.+.+++.+..... |+....+.+
T Consensus 251 ~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 251 IPLNNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp TTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 84 8899999999998887766 665544443
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.64 E-value=0.72 Score=37.27 Aligned_cols=66 Identities=6% Similarity=-0.148 Sum_probs=41.9
Q ss_pred CCcchHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 219 RADILFCNFVREFGKKRD---LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 219 ~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
.+...+..+..++...++ .++|..+|++.++..+ -++.....+...+.+.|++++|+..|+.+.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP-YNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 334455555555544433 5777777777776432 35566666677777777777777777777765
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.15 E-value=0.35 Score=40.08 Aligned_cols=64 Identities=9% Similarity=-0.038 Sum_probs=48.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKHL------SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
...+.|+..+.+.|++..|...|+...+.- ..+...++..|..+|.+.|+++.|+..+++..+.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 345567888888888888888888776531 1245677888888999999999999999888764
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.83 E-value=1.6 Score=39.87 Aligned_cols=98 Identities=9% Similarity=0.048 Sum_probs=69.8
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 003082 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDA 246 (850)
Q Consensus 167 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~ 246 (850)
+.|+++.|.++.+.+ ++...|..++......|+++.|.+.|....+ +..|.-.|.-.|+.+.-.++-+.
T Consensus 17 ~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----~~~L~~Ly~~tg~~e~L~kla~i 85 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS----FDKLSFLYLVTGDVNKLSKMQNI 85 (177)
T ss_dssp HTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----HHHHHHHHHHhCCHHHHHHHHHH
Confidence 579999999988765 3456799999999999999999999887644 45566666677777666655554
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003082 247 SKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYED 281 (850)
Q Consensus 247 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 281 (850)
....|- ++.-...+...|+++++.++|.+
T Consensus 86 A~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 86 AQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 444331 34444455567888888888764
No 229
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=92.23 E-value=1.5 Score=38.90 Aligned_cols=85 Identities=11% Similarity=0.062 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHH
Q 003082 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSG---NVEGALQILKIMREDGMSP--DVVAYTTAIKVCVRSKRLKQAF 603 (850)
Q Consensus 529 ~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p--d~~ty~~li~~~~~~g~~~~A~ 603 (850)
...+.+-|.+....|. ++..+.-.+.+++++.+ +++++..+|++..+.. .| +...+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3456666666666555 67778778889999988 6679999999988754 34 2444555666789999999999
Q ss_pred HHHHHHHHCCCCCC
Q 003082 604 SLFEEMKHYQIQPN 617 (850)
Q Consensus 604 ~l~~~m~~~g~~p~ 617 (850)
++++.+.+ +.|+
T Consensus 92 ~y~~~lL~--ieP~ 103 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHHHH--HCTT
T ss_pred HHHHHHHh--cCCC
Confidence 99999987 4674
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.32 E-value=4.8 Score=36.63 Aligned_cols=125 Identities=14% Similarity=0.150 Sum_probs=82.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHH
Q 003082 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (850)
Q Consensus 302 ~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~ 381 (850)
.|+++.|.++.+.+ .+...|..|-......|+++-|++.|..... +..+.-.|.-.|+.+.
T Consensus 18 lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 18 YGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-------------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp TTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-------------HHHHHHHHHHHTCHHH
T ss_pred cCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-------------HHHHHHHHHHhCCHHH
Confidence 45666666665544 2678899999999999999999999987543 4455556777888877
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 003082 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (850)
Q Consensus 382 A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 460 (850)
..++-+.....|- ++.-...+.-.|+++++.++|.+. |..|.... .....|-.+.|.++.+.+.
T Consensus 79 L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~~------~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 79 LSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG---GSLPLAYA------VAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHHH------HHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC---CChHHHHH------HHHHcCcHHHHHHHHHHhC
Confidence 7766666555542 566666677789999998888543 32222111 1123566777777776654
No 231
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.86 E-value=1.9 Score=38.61 Aligned_cols=76 Identities=8% Similarity=0.040 Sum_probs=52.1
Q ss_pred CcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhc-CChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHc
Q 003082 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSE-GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (850)
Q Consensus 67 p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~ 142 (850)
|..+-..+..-+..+...|.|+.|+.+.+-++... .+|+.+.....+..+.....++..+|.+..|...|++++..
T Consensus 16 ~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 16 PRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp -----CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 33335666777888999999999999999987653 23332223333444555566777999999999999998653
No 232
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=89.80 E-value=1.5 Score=38.87 Aligned_cols=65 Identities=15% Similarity=0.063 Sum_probs=31.2
Q ss_pred cCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003082 361 LDVFTYSTIVKVFADAK---WWQMALKVKEDMLSAGVTP--NTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (850)
Q Consensus 361 ~d~~ty~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p--~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 426 (850)
++..+.-.+..++++.+ +++++..+|++..+.+ .| +...+-.|.-+|.+.|++++|.+.++.+++
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34444444444555554 3445555555555432 12 223333344444555555555555555554
No 233
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=89.47 E-value=4.5 Score=33.09 Aligned_cols=69 Identities=10% Similarity=-0.049 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCC--cccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003082 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV--LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391 (850)
Q Consensus 323 d~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~--~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 391 (850)
+..-+-.|...+.+.|+++.|...|+...+...... -......|..+..+|.+.|+++.|...+++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 344445566666666666666666666555321110 012234455555555555555555555555544
No 234
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=89.26 E-value=0.41 Score=37.61 Aligned_cols=52 Identities=31% Similarity=0.420 Sum_probs=41.8
Q ss_pred HHHhhccchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEecCCcccccCcccchHHHHHHHHHhhh
Q 003082 713 AIDLRGLTKVEARIIVLAVLRMMKENYSLGVPVKDDLMIVLGPNKVNKIQAKHDLEVKDAITKLLQD 779 (850)
Q Consensus 713 ~~~l~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~i~~g~gk~s~~~g~~~~~v~~~v~~~l~~ 779 (850)
.+||||+...+|...+..+++.-... |. ..+.||.|.|. ..||..|.+.|..
T Consensus 6 ~lDLhG~~~~eA~~~l~~fl~~a~~~---g~---~~v~IIHGkG~---------GvLr~~V~~~L~~ 57 (83)
T 2zqe_A 6 EVDLRGLTVAEALLEVDQALEEARAL---GL---STLRLLHGKGT---------GALRQAIREALRR 57 (83)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHHHHT---TC---SEEEEECCSTT---------SHHHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHC---CC---CEEEEEECCCc---------hHHHHHHHHHHhc
Confidence 58999999999988887777655544 42 26899999886 3799999999998
No 235
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.97 E-value=4.9 Score=42.41 Aligned_cols=120 Identities=8% Similarity=-0.069 Sum_probs=77.5
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCC--CCcccHHHHHHHHHcCCChHHHH-HHhhhCCCCcchHHHH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPV--KELDEEFRIVQLCVNKPDVNLAI-RYACIVPRADILFCNF 227 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~p~~~~~~~~l 227 (850)
+...+..++..+......|+.++|...+++.+..---+ .+.. ...+-.+. ..++.. ...+...+
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~-----------~~~w~~~~r~~l~~~--~~~a~~~~ 177 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-----------DFQFVEPFATALVED--KVLAHTAK 177 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-----------TSTTHHHHHHHHHHH--HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC-----------chhHHHHHHHHHHHH--HHHHHHHH
Confidence 44444555555544455688899999998887652111 1100 01111110 011000 00344567
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 228 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
+..+...|++.+|+.....+.... +-+...|..+|.+|.+.|+..+|++.|+.+.+
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888899999999999999887753 24888999999999999999999999998764
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=88.58 E-value=3.2 Score=36.37 Aligned_cols=59 Identities=7% Similarity=0.027 Sum_probs=43.1
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHH
Q 003082 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292 (850)
Q Consensus 233 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 292 (850)
..++.++|.++|+.+++.+-.- ...|-.-...-.++|++..|.+++......+..|...
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 3378889999998887653222 6667777777778899999999998888776555443
No 237
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=88.48 E-value=11 Score=32.30 Aligned_cols=137 Identities=8% Similarity=0.004 Sum_probs=90.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHH
Q 003082 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (850)
Q Consensus 302 ~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~ 381 (850)
.|..++..++..+..+. .+..-||.+|--....-+-+-..++++.+-+. .|. ...|++..
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-------FDi----------s~C~NlKr 79 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-------FDL----------DKCQNLKS 79 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-------SCG----------GGCSCTHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh-------cCc----------HhhhcHHH
Confidence 36777778887777663 35666666665555555655555555554331 221 23444444
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 003082 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (850)
Q Consensus 382 A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 461 (850)
....+-.+- -+...+..-++.+..+|+-|+-.+++.++... .+|++...-.+..+|.+.|+..+|.+++.+..+
T Consensus 80 Vi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 80 VVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 444443331 24555667778888888888888888886443 477788888888899999999999999988887
Q ss_pred ccc
Q 003082 462 SKT 464 (850)
Q Consensus 462 ~~~ 464 (850)
.|.
T Consensus 154 kG~ 156 (172)
T 1wy6_A 154 KGE 156 (172)
T ss_dssp TTC
T ss_pred hhh
Confidence 775
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=87.72 E-value=5.7 Score=34.05 Aligned_cols=139 Identities=10% Similarity=0.097 Sum_probs=91.8
Q ss_pred hcCchhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcC
Q 003082 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNK 204 (850)
Q Consensus 125 ~~g~~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (850)
-.|..++..++..+..++ .+-.. ++-+ .|. ..+.-+.+-.+++++.+-.. |.. ...
T Consensus 19 ldG~v~qGveii~k~~~s--sni~E-----~NW~--ICN-iiD~a~C~y~v~vLd~IGki-FDi-------------s~C 74 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS--STKSE-----YNWF--ICN-LLESIDCRYMFQVLDKIGSY-FDL-------------DKC 74 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH--SCHHH-----HTHH--HHH-HHHHCCHHHHHHHHHHHGGG-SCG-------------GGC
T ss_pred HhhhHHHHHHHHHHHcCC--CCccc-----ccee--eee-cchhhchhHHHHHHHHHhhh-cCc-------------Hhh
Confidence 457888888887776643 11100 1111 122 22444445555556555322 111 134
Q ss_pred CChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 205 PDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 205 ~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
|+....+..+..+..........++.+..+|+-++-.+++..+.. ..+|+....-.+..+|.+.|+..+|.+++.+.-+
T Consensus 75 ~NlKrVi~C~~~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 75 QNLKSVVECGVINNTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp SCTHHHHHHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHHhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 556666666666655556667778889999999999999999754 3457888888999999999999999999999998
Q ss_pred CCCC
Q 003082 285 QNVT 288 (850)
Q Consensus 285 ~g~~ 288 (850)
.|++
T Consensus 154 kG~k 157 (172)
T 1wy6_A 154 KGEK 157 (172)
T ss_dssp TTCH
T ss_pred hhhH
Confidence 8863
No 239
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.51 E-value=8.7 Score=47.07 Aligned_cols=96 Identities=7% Similarity=0.102 Sum_probs=49.5
Q ss_pred CcccHHHHHHHHHcCCChHHHHHHhhhCC-----CC----------------------cchHHHHHHHHHhcCChHHHHH
Q 003082 190 ELDEEFRIVQLCVNKPDVNLAIRYACIVP-----RA----------------------DILFCNFVREFGKKRDLVSALR 242 (850)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~p-----~~----------------------~~~~~~li~~~~~~g~~~~A~~ 242 (850)
++...+-+++++...|++++|..+|.++- .. ...|..++..|.+.+.++.+++
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~ 920 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE 920 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 33344556666666666666666665530 00 0123445566666666666665
Q ss_pred HHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003082 243 AYDASKKHLSSPN----MYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (850)
Q Consensus 243 ~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (850)
+-...++.....+ ...|..+...+...|++++|...+-.+...
T Consensus 921 fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 921 FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 5554443221111 124555666666666666666666555443
No 240
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=86.23 E-value=47 Score=37.13 Aligned_cols=251 Identities=8% Similarity=0.011 Sum_probs=139.3
Q ss_pred HHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH--HH
Q 003082 197 IVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY--MK 274 (850)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~--~~ 274 (850)
-+..+.+.+++...+.++...|.+...-|....+....|+-.+|......+-..|. .....+..++..+.+.|.+ +.
T Consensus 78 ~l~~l~~~~~w~~~l~~~~~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~lt~~~ 156 (618)
T 1qsa_A 78 FVNELARREDWRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQDPLA 156 (618)
T ss_dssp HHHHHHHTTCHHHHHHHCCSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHhCCCHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCCCHHH
Confidence 45556678889988888876566666677788888889998777776666655443 2344677777777766643 23
Q ss_pred HHHHHHHHHhCCC-----------CcCHHH-HHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHHcCC
Q 003082 275 SRAIYEDLRSQNV-----------TLNIYV-FNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNI---LLKACCLAGN 339 (850)
Q Consensus 275 A~~~~~~m~~~g~-----------~pd~~t-~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~---Ll~~~~~~g~ 339 (850)
..+=++.+...|- .++... ...++... ++...+...... ..++...-.. -+.-+.+. +
T Consensus 157 ~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~-~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~rlar~-d 229 (618)
T 1qsa_A 157 YLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLA-NNPNTVLTFART-----TGATDFTRQMAAVAFASVARQ-D 229 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHH-HCGGGHHHHHHH-----SCCCHHHHHHHHHHHHHHHHH-C
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHH-hChHhHHHHHhc-----cCCChhhHHHHHHHHHHHHhc-C
Confidence 3333333333321 111111 11111111 111111111111 1223322122 23333333 7
Q ss_pred hHHHHHHHHHHHHhhhcCCcccCHh--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003082 340 TVLAQEIYGEVKHLEAKGVLKLDVF--TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQA 417 (850)
Q Consensus 340 ~~~A~~i~~~m~~~~~~g~~~~d~~--ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A 417 (850)
.+.|...|....+. ..+.+... .+..+...+...+...++...+....... ++.......+....+.|+++.|
T Consensus 230 ~~~A~~~~~~~~~~---~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 230 AENARLMIPSLAQA---QQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HHHHHHHHHHHHHH---TTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHhhhhc---cCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 78898888877642 21222211 23333333444553556666666655433 3444444555555678999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 003082 418 MHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (850)
Q Consensus 418 ~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 461 (850)
...|+.|.... .....-.--+-.++.+.|+.++|..+|+.+..
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99998886532 12233344455677789999999999998764
No 241
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.13 E-value=30 Score=34.77 Aligned_cols=25 Identities=20% Similarity=-0.116 Sum_probs=15.9
Q ss_pred cccHHHHHHHHHcCCChHHHHHHhh
Q 003082 191 LDEEFRIVQLCVNKPDVNLAIRYAC 215 (850)
Q Consensus 191 ~~~~~~l~~~~~~~~~~~~A~~~~~ 215 (850)
+..+..++..|.+.+++.+|..+|-
T Consensus 134 p~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 134 PYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 3455566666777777777766654
No 242
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=86.00 E-value=0.00011 Score=77.24 Aligned_cols=92 Identities=11% Similarity=0.057 Sum_probs=70.3
Q ss_pred CCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003082 184 FRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263 (850)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 263 (850)
+..+.+.+..|+.++++.+..+...+|++.|-+.. ++..|..+|....+.|++++-+..+....+..-.| .+=+.|+
T Consensus 47 yA~~~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~-Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi 123 (624)
T 3lvg_A 47 FAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKAD-DPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELI 123 (624)
T ss_dssp SSSSCCCCCCSSSHHHHTTTSSSCTTTTTSSCCCS-CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHH
T ss_pred HHHHhCCccHHHHHHHHHHccCchHHHHHHHHhCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHH
Confidence 34456778889999999999999999988775543 33567789999999999999999887766653334 4446889
Q ss_pred HHHHhcCCHHHHHHH
Q 003082 264 DVCGICGDYMKSRAI 278 (850)
Q Consensus 264 ~~~~~~g~~~~A~~~ 278 (850)
-+|++.+++.+-.++
T Consensus 124 ~ayAk~~rL~elEef 138 (624)
T 3lvg_A 124 FALAKTNRLAELEEF 138 (624)
T ss_dssp HHHHTSCSSSTTTST
T ss_pred HHHHhhCcHHHHHHH
Confidence 999999986554433
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=85.67 E-value=12 Score=42.97 Aligned_cols=136 Identities=13% Similarity=0.102 Sum_probs=72.5
Q ss_pred HHHHHHHhhcCC-hHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcC-chhHHHHHHHHHHHc------CCCC
Q 003082 75 ADMASKLAKDGR-LEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREG-RIDCVVGVLKKLNEL------GVAP 146 (850)
Q Consensus 75 ~~l~~~l~~~g~-~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~l~~~~~~------~~~p 146 (850)
..+...+...|+ ++.|+.+|+++... +|..-.... .. .+..+...+ +--+|+.++.+.++. ...+
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~--~~---~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~ 324 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYK--TA---MITILDHIETKELDMITILNETLDPLLSLLNDLPP 324 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHH--HH---HHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHH--HH---HHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcc
Confidence 444555555566 58899999999887 554321110 01 111111222 223566666555431 2222
Q ss_pred cccc----chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCC
Q 003082 147 LELF----DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR 219 (850)
Q Consensus 147 ~~~~----~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~ 219 (850)
.... .+....++.--+.-+...|+++-|+++-++.+... |....+|..|+..|...|+++.|+-.+...|.
T Consensus 325 ~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a--PseF~tW~~La~vYi~l~d~e~ALLtLNScPm 399 (754)
T 4gns_B 325 RDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA--LDSFESWYNLARCHIKKEEYEKALFAINSMPR 399 (754)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred cccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC--chhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 2110 11111222222333456678888888877776654 77777777777777777777777766666663
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.39 E-value=12 Score=39.48 Aligned_cols=71 Identities=11% Similarity=0.093 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 003082 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ-----AGCEPNSQCCN 437 (850)
Q Consensus 366 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~~~~ 437 (850)
...++..+...|++++|...+..+.... +.+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3456677888999999999998887664 34888999999999999999999999988764 48999887643
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.01 E-value=49 Score=35.36 Aligned_cols=172 Identities=8% Similarity=0.118 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003082 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337 (850)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~ 337 (850)
....|...|-..|++.+|..++.++...-. +..+.. --...+..-++.|...
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~---------------~~~~~~-------------~kve~~l~q~rl~l~~ 190 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETY---------------GSMEMS-------------EKIQFILEQMELSILK 190 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHC---------------SSSCHH-------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHH---------------hcccHH-------------HHHHHHHHHHHHHHHC
Confidence 445677888888999999888888763200 000000 0123455667778888
Q ss_pred CChHHHHHHHHHHHHhhhcCCcccC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHH----HHHHH
Q 003082 338 GNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADAKWWQMALKVKEDMLSA-GVTPNTITWSSLI----NACAN 410 (850)
Q Consensus 338 g~~~~A~~i~~~m~~~~~~g~~~~d--~~ty~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~ty~~li----~~~~~ 410 (850)
+++..|..++..+..........|+ ...|..++..+...+++.+|.+.|.+..+. ...-|...+..++ .+..-
T Consensus 191 ~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iL 270 (445)
T 4b4t_P 191 GDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVL 270 (445)
T ss_dssp TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHh
Confidence 9999998888876532222212222 245677777788889999988888777532 1111322222211 11111
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh--CCHHHHHHHHH
Q 003082 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA--CQFDRAFRLFR 457 (850)
Q Consensus 411 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~--g~~~~A~~l~~ 457 (850)
.+....-..++.........++...|..++.+|... .+++...+.|.
T Consensus 271 a~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~ 319 (445)
T 4b4t_P 271 SPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYE 319 (445)
T ss_dssp SSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTC
T ss_pred CCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHH
Confidence 221112222222222222235667788888887653 34555555443
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.24 E-value=4.1 Score=36.44 Aligned_cols=121 Identities=12% Similarity=0.038 Sum_probs=69.6
Q ss_pred HHhhhcCchhHHHHHHHHHHHc-CCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCC-CCCcccHHHHH
Q 003082 121 VKSIREGRIDCVVGVLKKLNEL-GVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP-VKELDEEFRIV 198 (850)
Q Consensus 121 ~~~~~~g~~~~A~~~l~~~~~~-~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~ 198 (850)
..+...|.++.|+.+.+.+... +..|+......-+.++...+..+..+|++..|...|++.++.... +........+.
T Consensus 28 k~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~ 107 (167)
T 3ffl_A 28 RDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTG 107 (167)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----------
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 3445789999999888886654 234443333444666777777788999999999999997654321 11110000000
Q ss_pred HHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003082 199 QLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKK 249 (850)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 249 (850)
.....+. -+. .+.+...-+-+...|.+.+++++|+.+++.+..
T Consensus 108 ---~~ss~p~----s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 108 ---NSASTPQ----SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ----------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred ---ccCCCcc----ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 0000000 011 122224556688888899999999988876543
No 247
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=82.71 E-value=24 Score=30.94 Aligned_cols=111 Identities=11% Similarity=-0.016 Sum_probs=71.4
Q ss_pred cCCcchhhHHHHHHHHHhhcCCh------HHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHH
Q 003082 65 RDLSSRNDYYADMASKLAKDGRL------EEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (850)
Q Consensus 65 ~~p~~~~~~~~~l~~~l~~~g~~------~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~ 138 (850)
..|++ .+.|-..+..+-+.|.. +..+..|++++..- .|......-....+---+..+...++.++|.++|+.
T Consensus 8 ~~p~~-yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~-Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 8 MMANN-PEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL-PPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQM 85 (161)
T ss_dssp --CCS-HHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS-CGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHH
T ss_pred eCCCC-HHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC-CccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 44555 77777777777777888 88889999988763 444322211111110012223455899999999999
Q ss_pred HHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCC
Q 003082 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (850)
Q Consensus 139 ~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~ 185 (850)
+++. ...+ --+++..+.--.++|+...|.+++...+..+
T Consensus 86 a~~~---hKkF-----AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 86 ARAN---CKKF-----AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HHHH---CTTB-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHH---hHHH-----HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 9864 2222 2334444455568999999999999998876
No 248
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=79.95 E-value=8.5 Score=32.74 Aligned_cols=84 Identities=10% Similarity=0.039 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHH
Q 003082 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEG---ALQILKIMREDGMSP--DVVAYTTAIKVCVRSKRLKQAFS 604 (850)
Q Consensus 530 ~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~---A~~l~~~m~~~g~~p--d~~ty~~li~~~~~~g~~~~A~~ 604 (850)
..+.+-+......|. |+..+--.+.+++.+..+..+ ++.++++....+ .| .....-.|.-++.+.|++++|.+
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 345555555555454 667776678889999887666 888888887653 23 22233345568889999999999
Q ss_pred HHHHHHHCCCCCC
Q 003082 605 LFEEMKHYQIQPN 617 (850)
Q Consensus 605 l~~~m~~~g~~p~ 617 (850)
+++.+.+ +.|+
T Consensus 96 ~~~~lL~--~eP~ 106 (126)
T 1nzn_A 96 YVRGLLQ--TEPQ 106 (126)
T ss_dssp HHHHHHH--HCTT
T ss_pred HHHHHHH--hCCC
Confidence 9999987 4564
No 249
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=78.48 E-value=8 Score=32.89 Aligned_cols=82 Identities=15% Similarity=0.118 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHHhCCHHHHH
Q 003082 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ---AMHLFEEMLQAGCEP--NSQCCNILLQACVEACQFDRAF 453 (850)
Q Consensus 379 ~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~---A~~l~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~A~ 453 (850)
+..+.+-|......|. |+..+--.+..++.++.+..+ ++.+++++.+.+ .| .-...-.|.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3344455555444443 566665556667777666544 777777776653 22 2223344555777888888888
Q ss_pred HHHHHHhhc
Q 003082 454 RLFRSWTLS 462 (850)
Q Consensus 454 ~l~~~m~~~ 462 (850)
+.++.+.+.
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888777655
No 250
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=77.04 E-value=14 Score=29.67 Aligned_cols=77 Identities=9% Similarity=-0.122 Sum_probs=53.7
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHH
Q 003082 235 RDLVSALRAYDASKKHLSSPNMYICRTII--DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY 312 (850)
Q Consensus 235 g~~~~A~~~~~~m~~~g~~p~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~ 312 (850)
...++|..+-+.+...+. .-.-+|| ..+...|+|++|..+.+.+. .||...|.+|-....|-.+.+..-+
T Consensus 21 H~HqEA~tIAdwL~~~~~----~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE----EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEYRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHHhcccHHHHHHHH
Confidence 456777777777666432 2222333 34667899999988876544 7899999888888888877777777
Q ss_pred HHHHHcC
Q 003082 313 KNMQKLG 319 (850)
Q Consensus 313 ~~m~~~g 319 (850)
.++...|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 7776665
No 251
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=76.62 E-value=57 Score=34.04 Aligned_cols=99 Identities=6% Similarity=-0.117 Sum_probs=65.7
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHc--CCCCccccch
Q 003082 75 ADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL--GVAPLELFDG 152 (850)
Q Consensus 75 ~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~--~~~p~~~~~~ 152 (850)
..++..|...|+|.+|..++.++.+.-...+.- ...+..+...+..|...|++..+...|..+... .+.+ ++
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~--~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~----~p 176 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDK--NLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC----PP 176 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCT--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC----CH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccc--hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC----CH
Confidence 478999999999999999999998754332222 223455556677788999999999999888654 1212 22
Q ss_pred hhhHHHHHHHH--hhh-hcCcHHHHHHHHHH
Q 003082 153 SGFKLLKNECQ--RLL-DSGEVEMFVGLMEV 180 (850)
Q Consensus 153 ~~~~~l~~~~~--~~~-~~g~~~~A~~~~~~ 180 (850)
.+. ..+..|. .+. ..++|.+|...|-+
T Consensus 177 ~i~-a~i~~~~Gi~~l~~~rdyk~A~~~F~e 206 (394)
T 3txn_A 177 KVQ-GALDLQSGILHAADERDFKTAFSYFYE 206 (394)
T ss_dssp HHH-HHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHH-HHHHHHhhHHHHHhccCHHHHHHHHHH
Confidence 222 2233332 244 67888888776644
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=75.93 E-value=15 Score=29.58 Aligned_cols=60 Identities=13% Similarity=0.100 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHH
Q 003082 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371 (850)
Q Consensus 307 ~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~ 371 (850)
+..+-++.+....+.|++.+..+.+++|-+.+++..|.++|+-++.. +.....+|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-----~~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-----AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-----hcCchhhHHHHHH
Confidence 45566666677788999999999999999999999999999988864 2334456777664
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=74.65 E-value=49 Score=40.39 Aligned_cols=215 Identities=11% Similarity=0.017 Sum_probs=122.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhc
Q 003082 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA 302 (850)
Q Consensus 223 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~ 302 (850)
....++..+.+.+.++.|.++.... +.+....-.+..+|..+|++++|.+.|.+.. .|+..+... .
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l--------~ 879 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQ--------F 879 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCS--------C
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchh--------h
Confidence 3445777788889988887755432 2355555567778999999999999998643 222211100 0
Q ss_pred CChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccC--HhHHHHHHHHHHhcCC
Q 003082 303 HDLKFTLEVYKNMQKLG--VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADAKW 378 (850)
Q Consensus 303 ~~~~~a~~l~~~m~~~g--~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d--~~ty~~li~~~~~~g~ 378 (850)
.... -+..+.... ...-..-|..++..+.+.|.++.+.++-....+....+ .++ ...|..+.+++...|+
T Consensus 880 ~~~~----~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~--~~~~~~~l~~~iFk~~L~l~~ 953 (1139)
T 4fhn_B 880 AVLR----EFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETD--DEDLSIAITHETLKTACAAGK 953 (1139)
T ss_dssp SSHH----HHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSC--CHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhc----ccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCC--ChhhHHHHHHHHHHHHHhhCC
Confidence 0000 011121111 11123446777788888888888877766555432111 121 2257888888889999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH------------HHHHHHHHHHc--CCCCCHHHHHHHHHHHH
Q 003082 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ------------AMHLFEEMLQA--GCEPNSQCCNILLQACV 444 (850)
Q Consensus 379 ~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~------------A~~l~~~m~~~--g~~p~~~~~~~ll~~~~ 444 (850)
+++|...+-.+.....+ ......||..+|..|..+. ..+++...-+. .....+.-|..|=.-+.
T Consensus 954 ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri 1031 (1139)
T 4fhn_B 954 FDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRY 1031 (1139)
T ss_dssp SGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhh
Confidence 99998888777665433 5566777777777665543 33344322211 11111223444444455
Q ss_pred HhCCHHHHHHH-HHHH
Q 003082 445 EACQFDRAFRL-FRSW 459 (850)
Q Consensus 445 ~~g~~~~A~~l-~~~m 459 (850)
..|++..|-.+ |+..
T Consensus 1032 ~r~dyR~AA~vmYe~~ 1047 (1139)
T 4fhn_B 1032 KHQNYRDAAAIIYEKL 1047 (1139)
T ss_dssp HHHTTSCHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHH
Confidence 67777666544 4433
No 254
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=74.07 E-value=89 Score=32.57 Aligned_cols=179 Identities=11% Similarity=-0.010 Sum_probs=85.1
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhh-cCchhHHHHHHHHHHHcCCCCccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIR-EGRIDCVVGVLKKLNELGVAPLEL 149 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~l~~~~~~~~~p~~~ 149 (850)
..+...|+..|.+.|++++...++.....-=..... .-...++..++..+.. .+..+.-.++..+.++-...- ..
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k---ak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~-~r 94 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISK---AKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE-KR 94 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCH---HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhch---HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH-HH
Confidence 356678899999999999999888766432111110 0011112222222222 123333333333332210000 00
Q ss_pred cchhhhH--HHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHH
Q 003082 150 FDGSGFK--LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNF 227 (850)
Q Consensus 150 ~~~~~~~--~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~l 227 (850)
+ .+. +=.+++..|...|++.+|.+++.++.+.=...++. ..++ .++..-
T Consensus 95 ~---flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~---~~ll-----------------------ev~lle 145 (394)
T 3txn_A 95 T---FLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDK---NLLV-----------------------EVQLLE 145 (394)
T ss_dssp H---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCT---HHHH-----------------------HHHHHH
T ss_pred H---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccc---hhHH-----------------------HHHHHH
Confidence 0 011 11244555556666666666665554421111110 0000 344556
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHH----HHHHHH-hcCCHHHHHHHHHHH
Q 003082 228 VREFGKKRDLVSALRAYDASKKH--LSSPNMYICRT----IIDVCG-ICGDYMKSRAIYEDL 282 (850)
Q Consensus 228 i~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~----li~~~~-~~g~~~~A~~~~~~m 282 (850)
+..|...+++.++...+...... .+.+++.+-.. -.-.+. ..++|..|...|-+.
T Consensus 146 ~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 146 SKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 78888888888888888766432 12122222111 112244 678888888777654
No 255
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=73.85 E-value=13 Score=29.75 Aligned_cols=77 Identities=9% Similarity=-0.127 Sum_probs=53.4
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHH
Q 003082 235 RDLVSALRAYDASKKHLSSPNMYICRTII--DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY 312 (850)
Q Consensus 235 g~~~~A~~~~~~m~~~g~~p~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~ 312 (850)
...++|..+-+.+...+. .-.-+|| ..+...|+|++|..+.+.+. .||...|.+|-....|-.+.+..-+
T Consensus 20 H~HqEA~tIAdwL~~~~~----~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ----DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCEWHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHHhcccHHHHHHHH
Confidence 456777777776666432 2222333 34667899999988766543 7898989888888888887777777
Q ss_pred HHHHHcC
Q 003082 313 KNMQKLG 319 (850)
Q Consensus 313 ~~m~~~g 319 (850)
.++...|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 7777665
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.66 E-value=23 Score=37.77 Aligned_cols=96 Identities=10% Similarity=0.083 Sum_probs=67.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCcCH----H
Q 003082 222 ILFCNFVREFGKKRDLVSALRAYDASKKH--LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS---QNVTLNI----Y 292 (850)
Q Consensus 222 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~pd~----~ 292 (850)
.+...++..|.+.|+++.|.+.|.++... +...-...+-.+|+.+...++|..+...+..... .+-.|+. .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35667888899999999999999988764 2333456788889999999999999999888753 2333332 2
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHH
Q 003082 293 VFNSLMNVNAHDLKFTLEVYKNMQK 317 (850)
Q Consensus 293 t~~~ll~~~~~~~~~a~~l~~~m~~ 317 (850)
.|..++....+++..|...|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 3444444455677777777766544
No 257
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=72.49 E-value=32 Score=27.75 Aligned_cols=63 Identities=13% Similarity=0.158 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003082 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (850)
Q Consensus 378 ~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~ 441 (850)
+.=+..+-++.+....+.|+.....+.+.+|-+.+++..|.++|+-++.+ +.....+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 44466777777778888999999999999999999999999999888765 3444556777765
No 258
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=71.84 E-value=22 Score=40.69 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=40.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHhhhcCCcccC-HhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003082 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDM 389 (850)
Q Consensus 332 ~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d-~~ty~~li~~~~~~g~~~~A~~l~~~m 389 (850)
+.|...|+++.|+++-++... +.|+ -.+|-.|...|...|+++.|+-.++-+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~------~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTE------LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH------HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHh------cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 345567888888888888776 3454 558888999999999999988888776
No 259
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.66 E-value=1.3e+02 Score=32.08 Aligned_cols=189 Identities=11% Similarity=0.093 Sum_probs=102.5
Q ss_pred ccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhH--HHHHHHHHHH
Q 003082 64 RRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDC--VVGVLKKLNE 141 (850)
Q Consensus 64 ~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~--A~~~l~~~~~ 141 (850)
..|-.+.......++..+...|+++....++.-+.+.+........ .+....+.........+. -+.+.+...
T Consensus 49 ~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~----~~V~~~~~~l~~~~~~d~~~~~~~i~~l~- 123 (445)
T 4b4t_P 49 ASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQ----YMIQKVMEYLKSSKSLDLNTRISVIETIR- 123 (445)
T ss_dssp SCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHH----HHHHHHHHHHHHHCTTHHHHHHHHHHCCS-
T ss_pred ccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHH----HHHHHHHHHHhcCCchhHHHHHHHHHHHH-
Confidence 4555556778888899999999999988877766554322221111 111111111112222221 111111111
Q ss_pred cCCCCcc-ccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCC
Q 003082 142 LGVAPLE-LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA 220 (850)
Q Consensus 142 ~~~~p~~-~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~ 220 (850)
.+.... +.-..-..+...++..+...|++.+|..++..+........+ -...+
T Consensus 124 -~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~---~~~kv---------------------- 177 (445)
T 4b4t_P 124 -VVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSME---MSEKI---------------------- 177 (445)
T ss_dssp -SSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSC---HHHHH----------------------
T ss_pred -HHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhccc---HHHHH----------------------
Confidence 111111 110011223344566777889999999999887643221111 00000
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003082 221 DILFCNFVREFGKKRDLVSALRAYDASKK----HLSSPNM--YICRTIIDVCGICGDYMKSRAIYEDLRS 284 (850)
Q Consensus 221 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (850)
..+...+..|...+++..|..++..+.. ....|+. ..|...+..+...++|.+|.+.|.++..
T Consensus 178 -e~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 178 -QFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp -HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3445567788888888888888877532 2222322 3466677777888899888888777653
No 260
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=67.12 E-value=2e+02 Score=33.78 Aligned_cols=24 Identities=21% Similarity=0.247 Sum_probs=16.6
Q ss_pred HHHHHHHHHcCCChHHHHHHhhhC
Q 003082 194 EFRIVQLCVNKPDVNLAIRYACIV 217 (850)
Q Consensus 194 ~~~l~~~~~~~~~~~~A~~~~~~~ 217 (850)
|..+++...+.++.+.+.++|..+
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l 256 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKL 256 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 566667777777777777777653
No 261
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=66.77 E-value=11 Score=38.87 Aligned_cols=73 Identities=7% Similarity=0.081 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCHHHHHH
Q 003082 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL--VEQAMHLFEEMLQAGCEPNSQCCNI 438 (850)
Q Consensus 365 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~~~~~ 438 (850)
..+.++.-|...|+.++|.+.++++...... ..+++..+..++-+.++ .+...+++..+...|+-+.......
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~G 293 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRG 293 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 4577888899999999999999998532221 24455666666666543 4668888888888776554444333
No 262
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=65.78 E-value=30 Score=29.60 Aligned_cols=59 Identities=14% Similarity=0.124 Sum_probs=46.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHH
Q 003082 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371 (850)
Q Consensus 308 a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~ 371 (850)
..+-++.+....+.|++.+..+-+++|-+.+++..|.++|+-++.. +.+...+|..++.
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-----~~~~~~iY~y~lq 130 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-----AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TTTCTTHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-----cCCchhhHHHHHH
Confidence 4455566666788999999999999999999999999999988864 3344556777664
No 263
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=65.69 E-value=44 Score=28.57 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 003082 601 QAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHE 636 (850)
Q Consensus 601 ~A~~l~~~m~~~g~~p~~~t~~~li~a~~~~g~~~~ 636 (850)
+..+-++.+....+.|+.....+.+++|.|.+++--
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfal 106 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFAS 106 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHH
Confidence 344444444444555555555555555555555444
No 264
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.49 E-value=26 Score=37.34 Aligned_cols=104 Identities=8% Similarity=-0.070 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
......++..+.+.|+++.|...|.++......+.+ .+.++-..++.+...+++..|...+.++...--...
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~-----kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~--- 202 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA-----KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGG--- 202 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS-----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH-----HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCC---
Confidence 456778999999999999999999999876544332 245556677778889999999999999865311111
Q ss_pred chhhhH-HHHHHHHhhhhcCcHHHHHHHHHHHH
Q 003082 151 DGSGFK-LLKNECQRLLDSGEVEMFVGLMEVLE 182 (850)
Q Consensus 151 ~~~~~~-~l~~~~~~~~~~g~~~~A~~~~~~~~ 182 (850)
++.... +-...+..+...+++.+|...|-...
T Consensus 203 d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 203 DWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp CTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHh
Confidence 111111 11122333456788888888776654
No 265
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=62.32 E-value=53 Score=26.36 Aligned_cols=85 Identities=15% Similarity=0.150 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003082 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEE 608 (850)
Q Consensus 529 ~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~ 608 (850)
.++|..|-+.+...+. ...+--+-+..+...|++++|..+.+.+ +.||...|-.|-. .+.|..+++...+.+
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLNR 94 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 5788888887777644 2333333455677888999888877665 4788888877655 477888888888877
Q ss_pred HHHCCCCCCHHHHH
Q 003082 609 MKHYQIQPNLVTYI 622 (850)
Q Consensus 609 m~~~g~~p~~~t~~ 622 (850)
+...| .|....|.
T Consensus 95 la~sg-~p~~q~Fa 107 (116)
T 2p58_C 95 LARSQ-DPRIQTFV 107 (116)
T ss_dssp HTTCC-CHHHHHHH
T ss_pred HHhCC-CHHHHHHH
Confidence 77665 34444443
No 266
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=60.46 E-value=1.5e+02 Score=30.01 Aligned_cols=79 Identities=10% Similarity=0.188 Sum_probs=39.7
Q ss_pred CcccHHHHHHHHHcCCChHHHHHHhhhCCCCc-chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003082 190 ELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD-ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI 268 (850)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 268 (850)
++.....++..|.+.+++.+|..+|-...++. ..+..++.-+...+.. .+++.+.-.+++. |.-
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~--------------~e~dlfiaRaVL~-yL~ 199 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDES--------------HTAPLYCARAVLP-YLL 199 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCG--------------GGHHHHHHHHHHH-HHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCC--------------ccHHHHHHHHHHH-HHH
Confidence 34455667777777777777777764322221 3343333222222210 1123444444444 444
Q ss_pred cCCHHHHHHHHHHHH
Q 003082 269 CGDYMKSRAIYEDLR 283 (850)
Q Consensus 269 ~g~~~~A~~~~~~m~ 283 (850)
.++...|..+|+...
T Consensus 200 l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 200 VANVRAANTAYRIFT 214 (336)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHH
Confidence 567777766665544
No 267
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=57.11 E-value=51 Score=26.41 Aligned_cols=85 Identities=11% Similarity=0.062 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003082 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEE 608 (850)
Q Consensus 529 ~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~ 608 (850)
.++|..|-+.+...+. ...+--+-+..+...|++++|..+.+.+ +.||...|-.|-. .+.|..+++...+.+
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLAG 93 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 5778888777777644 2333333455677888888888776655 4788888876654 478888888888877
Q ss_pred HHHCCCCCCHHHHH
Q 003082 609 MKHYQIQPNLVTYI 622 (850)
Q Consensus 609 m~~~g~~p~~~t~~ 622 (850)
+...| .|....|.
T Consensus 94 la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 94 LGGSS-DPALADFA 106 (115)
T ss_dssp HHTCS-SHHHHHHH
T ss_pred HHhCC-CHHHHHHH
Confidence 77665 34444443
No 268
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=57.00 E-value=92 Score=26.59 Aligned_cols=68 Identities=9% Similarity=0.107 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Q 003082 395 TPNTITWSSLINACANAGL---VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (850)
Q Consensus 395 ~p~~~ty~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 462 (850)
.|+..|--.+.-++.++.+ ...++.+++++.+.+..-....+-.|.-++.+.|++++|.+..+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4455444444555555544 3456666666665541112334444555666777777777777666544
No 269
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=53.69 E-value=5.2 Score=22.05 Aligned_cols=16 Identities=31% Similarity=0.607 Sum_probs=13.3
Q ss_pred cccchHHHHHhhhccC
Q 003082 833 PKKSLHHWLQRRVGST 848 (850)
Q Consensus 833 ~~~~~~~~~~~~~~~~ 848 (850)
++.||.+.|++|..++
T Consensus 1 Rk~SLqRFleKRk~R~ 16 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRV 16 (26)
T ss_pred CchhHHHHHHHHHHHh
Confidence 4789999999998764
No 270
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=53.31 E-value=1.6e+02 Score=30.20 Aligned_cols=72 Identities=14% Similarity=0.226 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHHH
Q 003082 585 AYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDTY 658 (850)
Q Consensus 585 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~~g~~p~~~~ 658 (850)
..+.++.=|...|+.++|.+.++++....+. ......++..++-+.+.. ..+.+..++..+.+.|+-+....
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~-~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGES-AFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSH-HHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchH-HHHHHHHHHHHHHHCCCCCHHHH
Confidence 4678899999999999999999999532221 245566677777665443 23447778888888887665443
No 271
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=51.27 E-value=5.5 Score=21.58 Aligned_cols=17 Identities=29% Similarity=0.573 Sum_probs=13.9
Q ss_pred ccccchHHHHHhhhccC.....
Q 003082 832 VPKKSLHHWLQRRVGST..... 848 (850)
Q Consensus 832 ~~~~~~~~~~~~~~~~~..... 848 (850)
.++.||.+.|++|..++
T Consensus 5 aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 5 ARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred hHHHHHHHHHHHhhccC.....
Confidence 46789999999998653
No 272
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=51.17 E-value=0.66 Score=49.27 Aligned_cols=165 Identities=9% Similarity=0.064 Sum_probs=97.8
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHhcCChhhHhhhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHcCCCCcccc
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~p~~~~ 150 (850)
+..|..|+.+..+.|+..+|+.-|-+.. +|+.|.. ++...-+.|++++-+..+.-+.+..-.|..
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA~----Dps~y~e---------Vi~~A~~~~~~edLv~yL~MaRk~~ke~~I-- 118 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKAD----DPSSYME---------VVQAANTSGNWEELVKYLQMARKKARESYV-- 118 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCCS----CCCSSSH---------HHHHTTTSSCCTTHHHHHHTTSTTCCSTTT--
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhCC----ChHHHHH---------HHHHHHhCCCHHHHHHHHHHHHHHhccccc--
Confidence 6788899999999999999988664332 5665543 334555889999999998877754334432
Q ss_pred chhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHH
Q 003082 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (850)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~ 230 (850)
+ +.++ ..|++.++..+-.+++ ..++......++..|-..|.++.|.-+|..+++.. .|...
T Consensus 119 D----teLi---~ayAk~~rL~elEefl--------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~a----kLAst 179 (624)
T 3lvg_A 119 E----TELI---FALAKTNRLAELEEFI--------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFG----RLAST 179 (624)
T ss_dssp T----HHHH---HHHHTSCSSSTTTSTT--------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCT----TTSSS
T ss_pred H----HHHH---HHHHhhCcHHHHHHHH--------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHH----HHHHH
Confidence 2 2233 2355666654332222 12344556788999999999998888877664422 23333
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003082 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275 (850)
Q Consensus 231 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 275 (850)
+.+.|++..|++. ..+ .-++.||-.+-.+|...+.+.-|
T Consensus 180 LV~L~~yq~AVda---ArK---Ans~ktWKeV~~ACvd~~EfrLA 218 (624)
T 3lvg_A 180 LVHLGEYQAAVDG---ARK---ANSTRTWKEVCFACVDGKEFRLA 218 (624)
T ss_dssp SSSCSGGGSSTTT---TTT---CCSSCSHHHHTHHHHHSCTTTTT
T ss_pred HHHHHHHHHHHHH---HHh---cCChhHHHHHHHHHhCchHHHHH
Confidence 4445555555431 111 12334444444555554444433
No 273
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=50.02 E-value=1.2e+02 Score=25.87 Aligned_cols=73 Identities=11% Similarity=-0.068 Sum_probs=50.4
Q ss_pred CCCCHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003082 544 LSPNHISWTILIDACGGSGN---VEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNL 618 (850)
Q Consensus 544 ~~p~~~ty~~li~~~~~~g~---~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 618 (850)
-.|+..|--.+.+++.++.+ ..+++.+++++.+.+-.-....+--|.-|+.+.|++++|.++.+.+.+ +.|+-
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 34566665556777777765 446888888887754111234455566788899999999999998886 46753
No 274
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=49.13 E-value=28 Score=32.98 Aligned_cols=85 Identities=9% Similarity=0.012 Sum_probs=41.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHH
Q 003082 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTIT--WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC--CNILLQACVE 445 (850)
Q Consensus 370 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~--~~~ll~~~~~ 445 (850)
+...+..|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+- ++.+.+.|..++... -.+.+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV----VRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHH----HHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 3445566777777777766666555443221 1123344455666543 344444554443221 1123334456
Q ss_pred hCCHHHHHHHHHH
Q 003082 446 ACQFDRAFRLFRS 458 (850)
Q Consensus 446 ~g~~~~A~~l~~~ 458 (850)
.|+.+-+..+++.
T Consensus 89 ~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 89 HRSPTCLRALLDS 101 (241)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHc
Confidence 6666655555543
No 275
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=48.74 E-value=34 Score=34.35 Aligned_cols=69 Identities=9% Similarity=0.131 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCHH
Q 003082 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL--VEQAMHLFEEMLQAGCEPNSQ 434 (850)
Q Consensus 365 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~ 434 (850)
..+.++.-|...|+.++|.+.++++...... ...++..+..++-+.++ .+.+.+++..+.+.|+-+...
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 3467788888899999999999888522111 23445555666665443 466778888888777554443
No 276
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=48.10 E-value=1.3e+02 Score=27.89 Aligned_cols=57 Identities=16% Similarity=0.235 Sum_probs=46.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 003082 376 AKWWQMALKVKEDMLSAGVTP-NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432 (850)
Q Consensus 376 ~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 432 (850)
.+...++.++|..|...|+-- -...|-.....+...|++.+|..+|+.-++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 455789999999999877643 356688888888999999999999999998887773
No 277
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=46.83 E-value=1.3e+02 Score=29.21 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=27.8
Q ss_pred hhhccccCCcchhhHHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 003082 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVS 100 (850)
Q Consensus 59 ~l~~l~~~p~~~~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~ 100 (850)
+...++..|.. ...-..|...||-.|+++.|..-++...+.
T Consensus 20 ~~~~VR~~P~d-a~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 20 LIEAIKASPKD-ASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHHHHTCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 33456666666 666666777777777777777777777666
No 278
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=43.63 E-value=1.6e+02 Score=25.46 Aligned_cols=67 Identities=7% Similarity=0.096 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Q 003082 396 PNTITWSSLINACANAGL---VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (850)
Q Consensus 396 p~~~ty~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 462 (850)
|+..+--.+.-++.++.+ ..+++.+++++...+..-.-...-.|.-++.+.|++++|.+..+.+.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 444444444445555443 3345555655555431112223333444566666666666666655543
No 279
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=39.39 E-value=2.8e+02 Score=26.97 Aligned_cols=115 Identities=11% Similarity=0.063 Sum_probs=71.0
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CcCHHHHHHHHHhhcCChH
Q 003082 229 REFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV--TLNIYVFNSLMNVNAHDLK 306 (850)
Q Consensus 229 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~pd~~t~~~ll~~~~~~~~ 306 (850)
....+.|++++|++....-++.. +-|...-..++..+|-.|+|++|..-++...+... .|-...|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------ 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------ 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH------
Confidence 34567788888888888777653 24777778888999999999999988888776522 2334556666653
Q ss_pred HHHHHHHHHHHcCCCC-----CHHHHHHHHHHHH--HcCChHHHHHHHHHHHH
Q 003082 307 FTLEVYKNMQKLGVMA-----DMASYNILLKACC--LAGNTVLAQEIYGEVKH 352 (850)
Q Consensus 307 ~a~~l~~~m~~~g~~p-----d~~t~~~Ll~~~~--~~g~~~~A~~i~~~m~~ 352 (850)
...-.++..-+-.| ...-...|+.+.. ..|+.++|.++-.+..+
T Consensus 78 --E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 78 --AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp --HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 11112222211111 2223334444443 45888888887777655
No 280
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=37.82 E-value=1.5e+02 Score=35.12 Aligned_cols=106 Identities=8% Similarity=-0.027 Sum_probs=76.2
Q ss_pred HHHHHHHHHcCCChHHHHHHhhhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--------------------
Q 003082 194 EFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSS-------------------- 253 (850)
Q Consensus 194 ~~~l~~~~~~~~~~~~A~~~~~~~p~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-------------------- 253 (850)
...++..|...+.++.|.++....|.++..-+.++.+|...|++++|...|++... |+.
T Consensus 813 ~~~l~~~L~~~~~~~~a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 813 VTELVEKLFLFKQYNACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHHHHTTCHHHHHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCccc
Confidence 34467777888889888888888888776666788899999999999999976432 211
Q ss_pred C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH----HHHHHHHHh
Q 003082 254 P---NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI----YVFNSLMNV 300 (850)
Q Consensus 254 p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~ll~~ 300 (850)
+ ...=|..++..+-+.+.++-+.++-+...+.--.-|. ..|+.++++
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~ 945 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKT 945 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 1 1125889999999999999999988887764222222 345555554
No 281
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=37.51 E-value=2e+02 Score=24.84 Aligned_cols=72 Identities=11% Similarity=-0.059 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003082 545 SPNHISWTILIDACGGSGN---VEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNL 618 (850)
Q Consensus 545 ~p~~~ty~~li~~~~~~g~---~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 618 (850)
.|+..+--.+.+++.++.+ ..+++.+++++...+-.-.....-.|.-++.+.|++++|.++.+.+.+ +.|+-
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 4666666667777877775 446778888877643111223333455678888899999888888887 45653
No 282
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=33.54 E-value=1.6e+02 Score=24.87 Aligned_cols=69 Identities=14% Similarity=0.226 Sum_probs=44.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCH
Q 003082 586 YTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKAND 656 (850)
Q Consensus 586 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~~g~~p~~ 656 (850)
.+.++.-|...|+.++|.+.++++....+ -......++..++-+.+.. +.+.+..++..+.+.|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~-~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGES-AFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSH-HHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChH-HHHHHHHHHHHHHHCCCcCHH
Confidence 45677888888888888888888852111 1245556666666665432 234467778788777765543
No 283
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=33.15 E-value=2.9e+02 Score=25.42 Aligned_cols=54 Identities=15% Similarity=0.148 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003082 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396 (850)
Q Consensus 340 ~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 396 (850)
..++.++|..|.. +|.-.--..-|-.....+...|++.+|..+|+.-.+.+-.|
T Consensus 95 ~~~p~~if~~L~~---~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFN---KGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHH---HTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHH---CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4566666666654 23222334455666666666666666666666666666555
No 284
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=32.48 E-value=1.1e+02 Score=25.92 Aligned_cols=23 Identities=9% Similarity=0.027 Sum_probs=11.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 003082 367 STIVKVFADAKWWQMALKVKEDM 389 (850)
Q Consensus 367 ~~li~~~~~~g~~~~A~~l~~~m 389 (850)
+.++.-|...|+.++|...++++
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 33444455555555555555554
No 285
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=30.39 E-value=1.9e+02 Score=25.23 Aligned_cols=69 Identities=14% Similarity=0.226 Sum_probs=43.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCH
Q 003082 586 YTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKAND 656 (850)
Q Consensus 586 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~~g~~p~~ 656 (850)
.+.++.-|...|+.++|...++++....+ -......++..++-+.+.. +.+.+..++..+.+.|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~-~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGES-AFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSH-HHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChH-HHHHHHHHHHHHHHCCCcCHH
Confidence 45677888888888888888888842111 1245556666666665432 234467777777777765543
No 286
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=29.78 E-value=1.3e+02 Score=26.47 Aligned_cols=69 Identities=10% Similarity=0.080 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCcCHHH
Q 003082 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD--YMKSRAIYEDLRSQNVTLNIYV 293 (850)
Q Consensus 224 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~pd~~t 293 (850)
...++.-|...|+.++|.+.++++..- ......++..+..++-+.++ .+.+..++..+...|+-+....
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p-~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVP-HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCC-cchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 456888888889999999999887531 11234455555556655332 4567777877777766544433
No 287
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=28.93 E-value=2.9e+02 Score=24.11 Aligned_cols=52 Identities=13% Similarity=0.157 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003082 380 QMALKVKEDMLSAGVTPN-TITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431 (850)
Q Consensus 380 ~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 431 (850)
+++.++|..|...|+--. ...|-.....+...|++.+|..+|+.-++.+-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 348888888888776433 5567778888888999999999999888887777
No 288
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=28.18 E-value=61 Score=25.43 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHH
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVV 98 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~ 98 (850)
+-.+...++.+++.|+|++|+...+...
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 6678889999999999999999877654
No 289
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=27.67 E-value=1.7e+02 Score=25.59 Aligned_cols=54 Identities=13% Similarity=0.051 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHcCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCCCC
Q 003082 129 IDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPV 188 (850)
Q Consensus 129 ~~~A~~~l~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 188 (850)
.+++.++|..+.+.||.-.. ...+...+..+-..|++.+|.++|+.-++....|
T Consensus 81 ~~dp~~if~~L~~~~IG~~~------AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 81 NSDLHQFFEFLYNHGIGTLS------SPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp BSCHHHHHHHHHTTTTTTTB------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 35589999999988877653 3345555666778899999999999988877555
No 290
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=27.38 E-value=4.9e+02 Score=26.18 Aligned_cols=102 Identities=13% Similarity=0.004 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHH-HHHHHHHHHHH----CC--CCCCHHHHHHHHHHHHHcCCHHHHH
Q 003082 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVE-GALQILKIMRE----DG--MSPDVVAYTTAIKVCVRSKRLKQAF 603 (850)
Q Consensus 531 ~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~-~A~~l~~~m~~----~g--~~pd~~ty~~li~~~~~~g~~~~A~ 603 (850)
-+.-+++-..+.++++|.....-|+..+.....-+ .=..+++++.+ .| -.-|......+...|.+.+++.+|.
T Consensus 77 L~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae 156 (336)
T 3lpz_A 77 LAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAE 156 (336)
T ss_dssp HHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 34444445555566666666666666665544311 11223333332 12 2336667777778888888888887
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 003082 604 SLFEEMKHYQIQPNLVTYITLLRARSRYGSLHE 636 (850)
Q Consensus 604 ~l~~~m~~~g~~p~~~t~~~li~a~~~~g~~~~ 636 (850)
..|= .|-.+...+|..++-.+...+...+
T Consensus 157 ~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 157 KHLV----LGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp HHHT----TSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred HHHH----hcCCchHHHHHHHHHHHHHhcCCcc
Confidence 7762 2444555677666666655554433
No 291
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=26.14 E-value=34 Score=34.65 Aligned_cols=107 Identities=12% Similarity=0.016 Sum_probs=56.2
Q ss_pred HHHHHHHHHcCCCCCHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHH
Q 003082 533 KALMNEMRTVGLSPNHIS--WTILIDACGGSGNVEGALQILKIMREDGMSPDV---VAYTTAIKVCVRSKRLKQAFSLFE 607 (850)
Q Consensus 533 ~~l~~~m~~~g~~p~~~t--y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~---~ty~~li~~~~~~g~~~~A~~l~~ 607 (850)
..+.+.+.+.|..++... -.+.+...+..|..+....+++. .|..++. .-++.|..+ ++.|+.+ +.+
T Consensus 219 ~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~ 290 (337)
T 4g8k_A 219 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLA-VELKLKK----IAE 290 (337)
T ss_dssp HHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHHH-HHTTCHH----HHH
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHHH-HHcCCHH----HHH
Confidence 344455567776664321 12234556677887766554432 2333322 222334433 4667764 445
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCCCHH
Q 003082 608 EMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAGYKANDT 657 (850)
Q Consensus 608 ~m~~~g~~p~~~t~~~li~a~~~~g~~~~a~~a~~l~~~M~~~g~~p~~~ 657 (850)
.+.+.|..+|..+ .|..| ++.|..+ +.+-+.++|-.||..
T Consensus 291 ~Ll~~GAd~n~~~--~L~~A-~~~~~~~-------iv~~Ll~~GA~~d~~ 330 (337)
T 4g8k_A 291 LLCKRGASTDCGD--LVMTA-RRNYDHS-------LVKVLLSHGAKEDFH 330 (337)
T ss_dssp HHHTTSCSSTTCC--HHHHH-HHTTCHH-------HHHHHHHTTCCC---
T ss_pred HHHHCCCCCCCCC--HHHHH-HHcCCHH-------HHHHHHHCcCCCCCC
Confidence 5667787777654 34433 4556643 445677888888753
No 292
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=25.73 E-value=34 Score=36.23 Aligned_cols=335 Identities=14% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHhhcCChHHHHHHHHHHHHc
Q 003082 241 LRAYDASKKHLSSPNMYI--CRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL 318 (850)
Q Consensus 241 ~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~a~~l~~~m~~~ 318 (850)
.++++.+++.|..++... ..+.+...+..|+.+-+..+++.-...........--..+.+..|+.+-..-+++. ..
T Consensus 27 ~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga 104 (437)
T 1n11_A 27 LPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLEN--NA 104 (437)
T ss_dssp HHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHH--TC
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhC--CC
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003082 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398 (850)
Q Consensus 319 g~~pd~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 398 (850)
.+......-.+.+...+..|+.+.+..+++.-.. .......-.+.+...+..|+.+ +++.+.+.|..++.
T Consensus 105 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~------~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~ 174 (437)
T 1n11_A 105 NPNLATTAGHTPLHIAAREGHVETVLALLEKEAS------QACMTKKGFTPLHVAAKYGKVR----VAELLLERDAHPNA 174 (437)
T ss_dssp CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC------SCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTC
T ss_pred CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC------CcCCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCC
Q ss_pred H--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHhhccccccccCccCC
Q 003082 399 I--TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC--NILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDG 474 (850)
Q Consensus 399 ~--ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~--~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~ 474 (850)
. .-.+.+...+..|+.+ +++.+.+.|..++...+ .+.+...++.|+.+-+..+++.-...+
T Consensus 175 ~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~----------- 239 (437)
T 1n11_A 175 AGKNGLTPLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN----------- 239 (437)
T ss_dssp CCSSCCCHHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-----------
T ss_pred CCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-----------
Q ss_pred chhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003082 475 NTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTIL 554 (850)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~a~~l~~~m~~~g~~p~~~ty~~l 554 (850)
..+....+.+..+......+..+++-+-....-..+..-.+.|
T Consensus 240 -------------------------------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L 282 (437)
T 1n11_A 240 -------------------------------------AESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPL 282 (437)
T ss_dssp -------------------------------------CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHH
T ss_pred -------------------------------------CCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHH
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHh
Q 003082 555 IDACGGSGNVEGALQILKIMREDGMSPDVVAYT--TAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTY--ITLLRARSR 630 (850)
Q Consensus 555 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~--~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~~li~a~~~ 630 (850)
..+..... ..+++.+.+.|..+|..... +.+...+..|+.+ +.+.+.+.|..++.... .+-+...++
T Consensus 283 ~~A~~~~~-----~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~gad~n~~~~~g~t~L~~A~~ 353 (437)
T 1n11_A 283 HLVAQEGH-----VPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIK----LVKFLLQHQADVNAKTKLGYSPLHQAAQ 353 (437)
T ss_dssp HHHHHHTC-----HHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSH----HHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHcCC-----HHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHH----HHHHHHhcCCCCCCCCCCCCCHHHHHHH
Q ss_pred cCChHHHHHHHHHHHHHHHcCCCCC
Q 003082 631 YGSLHEVQQCLAVYQDMWKAGYKAN 655 (850)
Q Consensus 631 ~g~~~~a~~a~~l~~~M~~~g~~p~ 655 (850)
.|..+ +++.+.+.|..|+
T Consensus 354 ~g~~~-------iv~~Ll~~ga~~~ 371 (437)
T 1n11_A 354 QGHTD-------IVTLLLKNGASPN 371 (437)
T ss_dssp TTCHH-------HHHHHHHTTCCSC
T ss_pred CChHH-------HHHHHHHCcCCCC
No 293
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=25.05 E-value=5e+02 Score=25.54 Aligned_cols=105 Identities=10% Similarity=0.089 Sum_probs=48.9
Q ss_pred HHHHHHHHcCCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccC---HhHHHHHHHHHHhcCCHHHHHH
Q 003082 310 EVYKNMQKLGVMADMAS--YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYSTIVKVFADAKWWQMALK 384 (850)
Q Consensus 310 ~l~~~m~~~g~~pd~~t--~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d---~~ty~~li~~~~~~g~~~~A~~ 384 (850)
.+.+.+.+.|..++... -.+.+...+..|..+....++.. ++..++ ..-++.| ...++.|+.+
T Consensus 220 ~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~-------~~~~vn~~d~~G~TpL-~~A~~~g~~~---- 287 (337)
T 4g8k_A 220 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ-------EHIEINDTDSDGKTAL-LLAVELKLKK---- 287 (337)
T ss_dssp HHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS-------TTCCTTCBCTTSCBHH-HHHHHTTCHH----
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh-------cCCcccCcCCCCCCHH-HHHHHcCCHH----
Confidence 44455566676554321 12334455667776665544431 112222 2222233 3334556653
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 003082 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433 (850)
Q Consensus 385 l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 433 (850)
+.+.+++.|..+|..+ .+...++.|+.+ +.+.+++.|-.||.
T Consensus 288 iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 288 IAELLCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHHHHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HHHHHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 3444556676666543 233334556543 34455666655553
No 294
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=24.87 E-value=49 Score=32.10 Aligned_cols=203 Identities=13% Similarity=0.042 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHH
Q 003082 309 LEVYKNMQKLGVMAD---MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385 (850)
Q Consensus 309 ~~l~~~m~~~g~~pd---~~t~~~Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l 385 (850)
.++++.+.+.|..++ ...-.+.+...+..|+.+-+..+++.-.. +......-.+.+...+..|+ .++
T Consensus 18 ~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~----~~~ 87 (285)
T 1wdy_A 18 VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD------PVLRKKNGATPFLLAAIAGS----VKL 87 (285)
T ss_dssp HHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTCCCHHHHHHHHTC----HHH
T ss_pred HHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC------CcccCCCCCCHHHHHHHcCC----HHH
Q ss_pred HHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHcCCCCC------------HHHHHHHHHHHHHhCCHHH
Q 003082 386 KEDMLSAGVTPNTITWS--SLINACANAGLVEQAMHLFEEMLQAGCEPN------------SQCCNILLQACVEACQFDR 451 (850)
Q Consensus 386 ~~~m~~~g~~p~~~ty~--~li~~~~~~g~~~~A~~l~~~m~~~g~~p~------------~~~~~~ll~~~~~~g~~~~ 451 (850)
++.+.+.|..++..... +.+...+..|+ .++++.+.+.|..++ ...-.+.+...+..|+.+-
T Consensus 88 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 163 (285)
T 1wdy_A 88 LKLFLSKGADVNECDFYGFTAFMEAAVYGK----VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV 163 (285)
T ss_dssp HHHHHHTTCCTTCBCTTCCBHHHHHHHTTC----HHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHH
T ss_pred HHHHHHcCCCCCccCcccCCHHHHHHHhCC----HHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHH
Q ss_pred HHHHHHHHhhccccccccCccCCchhhhhhhhhhhcccccCCCCCcCCCcccccccccCCCcCHHHHHHHHHHHh-ccHH
Q 003082 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC-TDYY 530 (850)
Q Consensus 452 A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~li~~~~-~~~~ 530 (850)
+..+++.....-. ..+....+.+..+.. ++..
T Consensus 164 v~~Ll~~~~~~~~-----------------------------------------------~~~~~g~t~l~~a~~~~~~~ 196 (285)
T 1wdy_A 164 LKILLDEMGADVN-----------------------------------------------ACDNMGRNALIHALLSSDDS 196 (285)
T ss_dssp HHHHHHTSCCCTT-----------------------------------------------CCCTTSCCHHHHHHHCSCTT
T ss_pred HHHHHHhcCCCCC-----------------------------------------------ccCCCCCCHHHHHHHccccc
Q ss_pred HHHHHHHHHHHcCCCCCH--HHHHHHHHHHHcCCCHHHHHHHHH
Q 003082 531 RVKALMNEMRTVGLSPNH--ISWTILIDACGGSGNVEGALQILK 572 (850)
Q Consensus 531 ~a~~l~~~m~~~g~~p~~--~ty~~li~~~~~~g~~~~A~~l~~ 572 (850)
...++++.+.+.|..++. ..-.+.++..++.|+.+-+..+++
T Consensus 197 ~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 197 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp THHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
No 295
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=24.35 E-value=5.4e+02 Score=25.65 Aligned_cols=186 Identities=10% Similarity=-0.028 Sum_probs=89.0
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHhc-CChhhHhhhhHHHHHHHHHHHhhhc-------------CchhHHHHHHHHHHH
Q 003082 76 DMASKLAKDGRLEEFAMIVESVVVSE-GNVSKFASMLSLEMVASGIVKSIRE-------------GRIDCVVGVLKKLNE 141 (850)
Q Consensus 76 ~l~~~l~~~g~~~~A~~l~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~-------------g~~~~A~~~l~~~~~ 141 (850)
.++..++.+|.++.|..++++-+..- ..|-.... ...+... ..++.. .++++ -..
T Consensus 33 ~laadhvAAGsFetAm~lLnrQvGivnf~PLk~~F---~~~y~~s-~~~l~~~~~~lp~l~~~~~r~~~e-------~~~ 101 (325)
T 3mv2_A 33 KLPAVLVAAGAFDAAVQALSKQVGVVKLEPLKKYF---TNIYEGC-RTYIPSTPCELPAQLGYVRAYDDT-------VSE 101 (325)
T ss_dssp CSHHHHHHTTCHHHHHHHHHHHHCBCCCGGGHHHH---HHHHHHT-EEEECCSSTTSCCEEEECBSSCSS-------SCG
T ss_pred CcHHHHHHccCHHHHHHHHHHHhCccCchhhHHHH---HHHHHHH-hhhcccCCCCCCcchhhhcCCccc-------ccc
Confidence 46778899999999999998776442 23332211 1111110 000000 01111 000
Q ss_pred cCCCCccccchhhhHHHHHHHHhhhhcCcHHHHHHHHHHHHhCCC-C-CCCcccHHHHHHHHHcCCChHHHHHHhhhCCC
Q 003082 142 LGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRL-P-VKELDEEFRIVQLCVNKPDVNLAIRYACIVPR 219 (850)
Q Consensus 142 ~~~~p~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~p~ 219 (850)
.++.|....... +..-++.+..+...|++++|+..|+.++..-. . .++ ..+.+++.++.....
T Consensus 102 ~~~lP~i~~l~~-L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~-------------~~e~~e~~eli~icr- 166 (325)
T 3mv2_A 102 DQILPYVPGLDV-VNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDD-------------AEDEKLAHKILETAR- 166 (325)
T ss_dssp GGCCBCCCCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCS-------------SHHHHHHHHHHHHHH-
T ss_pred ccCCCCCCCHHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecc-------------HHHHHHHHHHHHHHH-
Confidence 122333321222 33356677788899999999999998764310 0 011 111112222111100
Q ss_pred CcchHHHHHHHHHhc---CChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 003082 220 ADILFCNFVREFGKK---RDLVSALRAYDASKKHLSSPNM--YICRTIIDVCGICGDYMKSRAIYEDLRSQNVT 288 (850)
Q Consensus 220 ~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 288 (850)
+.+.-..+..-.+. .+....+++---+......|.. -+...-|....|.+++..|..+-+++++.+..
T Consensus 167 -EYilal~iEl~Rr~l~~~~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 167 -EYILGLSIELERRSLKEGNTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp -HHHHHHHHHHHHHTCCTTCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred -HHHHHHHHHHHHHhcCcccHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 00111112222221 2334444444444444444432 34556666777888888888888888876543
No 296
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=22.63 E-value=4e+02 Score=23.56 Aligned_cols=55 Identities=16% Similarity=0.194 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 003082 380 QMALKVKEDMLSAGVTPN-TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434 (850)
Q Consensus 380 ~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 434 (850)
+++.++|..|...||--. ...|-.....+...|++.+|..+|..-++.+-.|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 347788999988876533 5567778888888999999999999999888777543
No 297
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=22.44 E-value=84 Score=29.50 Aligned_cols=117 Identities=10% Similarity=0.067 Sum_probs=52.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhhhcCCcccCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHH
Q 003082 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT---WSSLIN 406 (850)
Q Consensus 330 Ll~~~~~~g~~~~A~~i~~~m~~~~~~g~~~~d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---y~~li~ 406 (850)
.+...+..|+.+-...+++...... ...-..|...++ .+...+..|+.+ +++.+.+.|..++... -.+.+.
T Consensus 82 ~l~~A~~~~~~~~~~~Ll~~~~~~~-~~~~~~~~~g~t-~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~g~t~L~ 155 (241)
T 1k1a_A 82 AAHLACEHRSPTCLRALLDSAAPGT-LDLEARNYDGLT-ALHVAVNTECQE----TVQLLLERGADIDAVDIKSGRSPLI 155 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCTTS-CCTTCCCTTSCC-HHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTTCCCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCcc-ccccccCcCCCc-HHHHHHHcCCHH----HHHHHHHcCCCcccccccCCCcHHH
Confidence 3444556777766555554321000 000011112222 233344556644 4445555665554322 223444
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHhCCHHHHHHHH
Q 003082 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQC--CNILLQACVEACQFDRAFRLF 456 (850)
Q Consensus 407 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~--~~~ll~~~~~~g~~~~A~~l~ 456 (850)
..+..|+.+-+ +.+.+.|..++... -.+.+...++.|+.+-+.-++
T Consensus 156 ~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 203 (241)
T 1k1a_A 156 HAVENNSLSMV----QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLV 203 (241)
T ss_dssp HHHHTTCHHHH----HHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHH
T ss_pred HHHHcCCHHHH----HHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 55667776544 44445565544321 122344445677766554444
No 298
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=22.31 E-value=1.2e+02 Score=30.32 Aligned_cols=15 Identities=20% Similarity=0.164 Sum_probs=7.9
Q ss_pred HHhcCCHHHHHHHHH
Q 003082 266 CGICGDYMKSRAIYE 280 (850)
Q Consensus 266 ~~~~g~~~~A~~~~~ 280 (850)
.++.|+.+....++.
T Consensus 31 A~~~g~~~~v~~ll~ 45 (351)
T 3utm_A 31 AARSGNEEKLMALLT 45 (351)
T ss_dssp HHHHTCHHHHHHHCC
T ss_pred HHHcCCHHHHHHHHH
Confidence 345566655555543
No 299
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=22.19 E-value=5.9e+02 Score=25.29 Aligned_cols=25 Identities=12% Similarity=-0.080 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHH
Q 003082 323 DMASYNILLKACCLAGNTVLAQEIY 347 (850)
Q Consensus 323 d~~t~~~Ll~~~~~~g~~~~A~~i~ 347 (850)
|+.....+...|.+.|++.+|+.-|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 5666777777777777777777655
No 300
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=22.14 E-value=73 Score=24.30 Aligned_cols=30 Identities=13% Similarity=0.052 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 003082 71 NDYYADMASKLAKDGRLEEFAMIVESVVVS 100 (850)
Q Consensus 71 ~~~~~~l~~~l~~~g~~~~A~~l~~~~~~~ 100 (850)
..-...++..|+..|.|+.|+..|+.+++.
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 445567899999999999999999998865
No 301
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=21.72 E-value=3.1e+02 Score=21.85 Aligned_cols=56 Identities=11% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 003082 567 ALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH-----YQIQPNLVTYITL 624 (850)
Q Consensus 567 A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~l 624 (850)
|..+.++....|+.|+..+..-++..|...+. .+.++.++... .|..|+..+.+.+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~l--da~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ--NEEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhcCCCCCCHHHHHHH
No 302
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=20.54 E-value=2.7e+02 Score=24.68 Aligned_cols=53 Identities=13% Similarity=0.222 Sum_probs=37.7
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 003082 567 ALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLV 619 (850)
Q Consensus 567 A~~l~~~m~~~g~~pd-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 619 (850)
+..+|..|...|+--. ...|......+-..|++.+|.++|+.-++.+-.|-..
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 5667888877765443 4456677777777888888888888888777777543
Done!