Query 003084
Match_columns 850
No_of_seqs 627 out of 5260
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 16:42:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003084.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003084hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 5.7E-60 1.2E-64 575.7 43.7 540 109-766 70-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 3.3E-55 7.1E-60 534.0 41.7 520 136-767 69-589 (968)
3 KOG4194 Membrane glycoprotein 100.0 6.6E-42 1.4E-46 348.5 7.0 374 338-768 81-458 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.8E-39 4E-44 330.7 3.6 372 312-741 80-455 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 8.2E-39 1.8E-43 312.1 -16.4 489 108-738 45-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 8E-38 1.7E-42 305.2 -18.7 491 131-762 40-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 3.2E-34 6.9E-39 308.7 -5.2 484 83-735 23-510 (1081)
8 KOG0618 Serine/threonine phosp 100.0 2.3E-34 5E-39 309.8 -6.9 442 58-590 23-466 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 2.6E-32 5.5E-37 280.4 -3.7 363 340-765 12-378 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 4.6E-32 1E-36 278.5 -4.4 384 261-733 7-394 (1255)
11 KOG4237 Extracellular matrix p 99.9 4.6E-27 1E-31 230.1 -2.8 251 311-564 68-358 (498)
12 KOG4237 Extracellular matrix p 99.9 2.7E-26 5.8E-31 224.7 -4.5 282 314-600 50-346 (498)
13 PLN03210 Resistant to P. syrin 99.9 2E-22 4.4E-27 245.4 27.4 339 306-712 554-904 (1153)
14 PLN03210 Resistant to P. syrin 99.9 4.2E-22 9.1E-27 242.7 28.1 342 326-736 549-904 (1153)
15 PRK15387 E3 ubiquitin-protein 99.8 2.5E-20 5.5E-25 209.5 18.3 63 654-721 403-465 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 1.7E-19 3.6E-24 202.9 17.7 266 311-699 202-467 (788)
17 PRK15370 E3 ubiquitin-protein 99.7 1.7E-17 3.6E-22 188.5 14.2 182 384-589 178-359 (754)
18 PRK15370 E3 ubiquitin-protein 99.7 7.8E-18 1.7E-22 191.1 11.4 204 336-591 179-382 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 6.7E-19 1.4E-23 187.1 -2.7 83 654-736 222-318 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 2E-18 4.4E-23 183.4 -0.3 218 428-713 77-319 (319)
21 KOG0617 Ras suppressor protein 99.6 1.4E-17 2.9E-22 144.8 -4.7 160 526-743 31-191 (264)
22 KOG0617 Ras suppressor protein 99.6 4.8E-17 1E-21 141.4 -4.4 170 496-725 26-196 (264)
23 PLN03150 hypothetical protein; 99.5 4E-14 8.7E-19 161.0 10.7 118 654-771 419-538 (623)
24 PLN03150 hypothetical protein; 99.2 5.6E-11 1.2E-15 135.4 12.1 114 577-743 419-533 (623)
25 KOG3207 Beta-tubulin folding c 99.2 1.2E-11 2.5E-16 124.6 2.6 216 3-226 119-342 (505)
26 KOG0532 Leucine-rich repeat (L 99.1 2.5E-12 5.4E-17 133.4 -4.9 176 503-741 75-250 (722)
27 KOG0532 Leucine-rich repeat (L 99.1 3.7E-12 8.1E-17 132.1 -3.8 196 478-736 73-271 (722)
28 KOG1259 Nischarin, modulator o 99.1 1.6E-11 3.6E-16 117.0 0.8 87 653-742 329-416 (490)
29 COG4886 Leucine-rich repeat (L 99.1 1.9E-10 4.2E-15 125.6 7.1 199 460-743 97-295 (394)
30 COG4886 Leucine-rich repeat (L 99.0 4.7E-10 1E-14 122.6 8.0 102 388-493 97-199 (394)
31 KOG1259 Nischarin, modulator o 99.0 5.8E-11 1.3E-15 113.4 -0.1 186 24-225 207-414 (490)
32 KOG1909 Ran GTPase-activating 99.0 3E-11 6.6E-16 118.4 -2.4 242 107-371 29-310 (382)
33 PF14580 LRR_9: Leucine-rich r 99.0 2.6E-10 5.7E-15 105.4 3.2 107 107-223 18-126 (175)
34 KOG3207 Beta-tubulin folding c 99.0 1.2E-10 2.7E-15 117.4 0.5 219 157-422 118-340 (505)
35 KOG1909 Ran GTPase-activating 98.9 1.4E-10 3E-15 113.8 -0.5 241 2-248 27-310 (382)
36 PF14580 LRR_9: Leucine-rich r 98.9 5.1E-10 1.1E-14 103.6 2.8 105 107-217 41-147 (175)
37 PF13855 LRR_8: Leucine rich r 98.9 1.5E-09 3.2E-14 82.4 3.0 60 654-713 2-61 (61)
38 KOG0531 Protein phosphatase 1, 98.8 3.2E-10 7E-15 123.7 -1.4 249 406-743 70-323 (414)
39 PF13855 LRR_8: Leucine rich r 98.8 1.9E-09 4.1E-14 81.8 3.0 61 677-737 1-61 (61)
40 KOG0531 Protein phosphatase 1, 98.7 5.6E-09 1.2E-13 114.1 0.8 197 2-223 92-290 (414)
41 KOG4658 Apoptotic ATPase [Sign 98.6 2.5E-08 5.5E-13 116.1 5.4 57 652-708 769-826 (889)
42 KOG2120 SCF ubiquitin ligase, 98.6 7.5E-10 1.6E-14 106.0 -7.2 183 6-195 186-373 (419)
43 KOG4658 Apoptotic ATPase [Sign 98.6 6E-08 1.3E-12 113.0 6.8 200 286-493 523-730 (889)
44 KOG1859 Leucine-rich repeat pr 98.5 6.5E-09 1.4E-13 111.3 -4.6 128 633-765 166-295 (1096)
45 KOG2120 SCF ubiquitin ligase, 98.4 8.3E-09 1.8E-13 99.0 -4.4 182 56-245 185-372 (419)
46 KOG4341 F-box protein containi 98.4 6.3E-09 1.4E-13 104.7 -5.5 305 32-342 139-459 (483)
47 KOG4341 F-box protein containi 98.4 1.2E-08 2.7E-13 102.7 -5.0 307 7-317 140-459 (483)
48 KOG1859 Leucine-rich repeat pr 98.3 1E-08 2.2E-13 109.9 -6.9 107 107-223 186-292 (1096)
49 KOG2982 Uncharacterized conser 98.2 4.6E-07 1E-11 87.2 2.0 188 29-223 69-262 (418)
50 KOG4579 Leucine-rich repeat (L 98.2 8.7E-08 1.9E-12 81.2 -3.8 82 654-738 54-136 (177)
51 KOG3665 ZYG-1-like serine/thre 98.1 1E-06 2.2E-11 100.3 2.1 110 5-122 122-234 (699)
52 KOG2982 Uncharacterized conser 98.1 8.7E-07 1.9E-11 85.4 0.5 110 159-271 44-156 (418)
53 COG5238 RNA1 Ran GTPase-activa 98.0 7.8E-07 1.7E-11 84.6 -1.0 218 107-348 29-285 (388)
54 PF12799 LRR_4: Leucine Rich r 97.8 1.4E-05 3.1E-10 55.0 3.1 36 678-714 2-37 (44)
55 KOG4579 Leucine-rich repeat (L 97.8 1.6E-06 3.4E-11 73.8 -2.5 88 308-399 51-138 (177)
56 PRK15386 type III secretion pr 97.8 6.3E-05 1.4E-09 78.7 7.8 32 677-711 156-187 (426)
57 KOG3665 ZYG-1-like serine/thre 97.8 4.6E-06 9.9E-11 95.0 -0.6 154 55-217 121-282 (699)
58 PF12799 LRR_4: Leucine Rich r 97.8 2.1E-05 4.5E-10 54.2 2.7 38 654-692 2-39 (44)
59 COG5238 RNA1 Ran GTPase-activa 97.7 9.1E-06 2E-10 77.5 0.8 92 134-225 155-257 (388)
60 PF13306 LRR_5: Leucine rich r 97.7 9.6E-05 2.1E-09 66.2 6.8 105 330-440 7-111 (129)
61 PF13306 LRR_5: Leucine rich r 97.6 0.00011 2.4E-09 65.9 6.5 82 282-367 8-89 (129)
62 KOG1644 U2-associated snRNP A' 97.6 0.00012 2.6E-09 67.2 6.2 108 107-220 41-150 (233)
63 KOG1644 U2-associated snRNP A' 97.6 0.00011 2.4E-09 67.4 5.2 105 383-489 41-149 (233)
64 PRK15386 type III secretion pr 97.5 0.00076 1.6E-08 70.8 10.4 53 310-369 52-104 (426)
65 KOG2739 Leucine-rich acidic nu 97.1 0.00036 7.7E-09 67.2 3.1 85 3-94 41-127 (260)
66 KOG1947 Leucine rich repeat pr 96.9 7.4E-05 1.6E-09 84.5 -3.5 115 29-148 186-307 (482)
67 KOG1947 Leucine rich repeat pr 96.6 0.00029 6.3E-09 79.6 -2.1 62 334-395 242-306 (482)
68 KOG2739 Leucine-rich acidic nu 96.5 0.0017 3.6E-08 62.7 2.6 83 107-197 42-128 (260)
69 KOG2123 Uncharacterized conser 96.5 0.00019 4.2E-09 69.0 -3.8 84 30-122 18-102 (388)
70 KOG2123 Uncharacterized conser 96.3 0.0002 4.3E-09 68.9 -4.9 101 4-114 18-123 (388)
71 PF00560 LRR_1: Leucine Rich R 94.7 0.012 2.6E-07 33.5 0.6 12 679-690 2-13 (22)
72 PF00560 LRR_1: Leucine Rich R 94.7 0.014 2.9E-07 33.3 0.8 12 655-666 2-13 (22)
73 KOG3864 Uncharacterized conser 94.2 0.0065 1.4E-07 56.2 -1.9 79 7-88 103-183 (221)
74 KOG4308 LRR-containing protein 94.1 0.00042 9.1E-09 75.7 -11.8 186 33-223 89-303 (478)
75 KOG4308 LRR-containing protein 91.0 0.0043 9.3E-08 68.0 -9.1 190 7-199 89-304 (478)
76 PF13504 LRR_7: Leucine rich r 90.4 0.17 3.7E-06 26.6 1.2 12 161-172 2-13 (17)
77 KOG0473 Leucine-rich repeat pr 89.6 0.0095 2.1E-07 56.2 -6.7 82 654-738 43-124 (326)
78 smart00369 LRR_TYP Leucine-ric 89.6 0.3 6.5E-06 29.0 2.0 13 702-714 3-15 (26)
79 smart00370 LRR Leucine-rich re 89.6 0.3 6.5E-06 29.0 2.0 13 702-714 3-15 (26)
80 smart00369 LRR_TYP Leucine-ric 89.1 0.34 7.4E-06 28.8 2.0 16 677-692 2-17 (26)
81 smart00370 LRR Leucine-rich re 89.1 0.34 7.4E-06 28.8 2.0 16 677-692 2-17 (26)
82 KOG0473 Leucine-rich repeat pr 86.0 0.023 4.9E-07 53.7 -6.5 88 671-761 36-123 (326)
83 PF13516 LRR_6: Leucine Rich r 85.9 0.28 6E-06 28.5 0.3 13 32-44 3-15 (24)
84 KOG3864 Uncharacterized conser 84.2 0.22 4.9E-06 46.4 -0.9 59 58-119 103-162 (221)
85 PF13516 LRR_6: Leucine Rich r 83.9 0.29 6.2E-06 28.5 -0.2 15 701-715 2-16 (24)
86 PHA03099 epidermal growth fact 79.1 1.1 2.4E-05 37.8 1.5 33 799-831 105-137 (139)
87 TIGR00864 PCC polycystin catio 79.1 0.54 1.2E-05 60.8 -0.5 37 707-743 1-37 (2740)
88 KOG4242 Predicted myosin-I-bin 78.5 11 0.00024 40.3 8.7 33 211-243 355-387 (553)
89 smart00365 LRR_SD22 Leucine-ri 73.3 3 6.5E-05 24.8 1.8 14 701-714 2-15 (26)
90 PF08693 SKG6: Transmembrane a 71.8 0.74 1.6E-05 30.4 -1.0 26 797-822 13-38 (40)
91 smart00368 LRR_RI Leucine rich 66.1 4.2 9.1E-05 24.6 1.5 15 32-46 3-17 (28)
92 smart00364 LRR_BAC Leucine-ric 65.5 4.3 9.3E-05 24.1 1.3 13 702-714 3-15 (26)
93 PF15102 TMEM154: TMEM154 prot 64.8 4 8.6E-05 36.0 1.6 23 801-823 66-88 (146)
94 smart00367 LRR_CC Leucine-rich 61.3 5.6 0.00012 23.5 1.4 11 31-41 2-12 (26)
95 KOG4242 Predicted myosin-I-bin 60.5 49 0.0011 35.7 8.8 107 310-419 165-279 (553)
96 KOG3763 mRNA export factor TAP 54.7 10 0.00022 41.5 2.9 38 29-66 216-254 (585)
97 KOG3763 mRNA export factor TAP 54.5 6.5 0.00014 42.9 1.4 70 3-72 216-286 (585)
98 PF01102 Glycophorin_A: Glycop 54.4 6.6 0.00014 33.9 1.2 22 797-818 67-88 (122)
99 TIGR00864 PCC polycystin catio 47.2 12 0.00026 49.3 2.4 33 683-715 1-33 (2740)
100 PF02009 Rifin_STEVOR: Rifin/s 46.7 14 0.00031 37.7 2.4 14 810-823 271-284 (299)
101 PF08114 PMP1_2: ATPase proteo 41.2 22 0.00048 23.4 1.8 11 814-824 27-37 (43)
102 PF04478 Mid2: Mid2 like cell 33.9 8.6 0.00019 34.3 -1.2 9 795-803 50-58 (154)
103 PTZ00046 rifin; Provisional 33.2 26 0.00057 36.4 1.9 17 809-825 329-345 (358)
104 TIGR01477 RIFIN variant surfac 32.5 28 0.00061 36.1 1.9 15 810-824 325-339 (353)
105 PF01034 Syndecan: Syndecan do 31.6 14 0.00031 27.3 -0.2 10 798-807 13-22 (64)
106 PF08374 Protocadherin: Protoc 30.4 27 0.00059 33.1 1.3 29 792-821 36-64 (221)
107 PF12191 stn_TNFRSF12A: Tumour 28.5 25 0.00055 30.1 0.7 14 812-825 97-110 (129)
108 TIGR01478 STEVOR variant surfa 25.2 37 0.00081 33.8 1.3 15 809-823 273-287 (295)
109 PRK00523 hypothetical protein; 23.6 61 0.0013 24.8 1.9 18 809-826 18-35 (72)
110 smart00082 LRRCT Leucine rich 22.9 41 0.00088 23.6 0.9 13 759-771 1-13 (51)
111 PRK01844 hypothetical protein; 22.4 70 0.0015 24.5 2.0 16 810-825 18-33 (72)
112 PF15176 LRR19-TM: Leucine-ric 21.5 98 0.0021 25.5 2.7 8 801-808 21-28 (102)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.7e-60 Score=575.72 Aligned_cols=540 Identities=36% Similarity=0.536 Sum_probs=416.4
Q ss_pred CCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCcccc-CCCCCCEEECCCCcCcCCCCcccccCCCCC
Q 003084 109 SLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLA-NTTSLRILDVSFNQLTGSISSSPLVHLTSI 187 (850)
Q Consensus 109 ~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L 187 (850)
+++.|++++|.+.+ .++ ..+..+++|++|+|++|++.+.+|..+. ++++|++|++++|.+++.+|. ..+++|
T Consensus 70 ~v~~L~L~~~~i~~---~~~-~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L 142 (968)
T PLN00113 70 RVVSIDLSGKNISG---KIS-SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNL 142 (968)
T ss_pred cEEEEEecCCCccc---cCC-hHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCC
Confidence 45556665555544 222 3455555555555555555544444332 555555555555555444433 234445
Q ss_pred CeEECcCCcCcCCCCcccccCCCCccEEEccCCccccccccccCCCCccceeEEEccCCCCCCcccCccccCCCCccEEE
Q 003084 188 EELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAE 267 (850)
Q Consensus 188 ~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~ 267 (850)
++|++++|.+.+ .+|..+..+++|+.|+
T Consensus 143 ~~L~Ls~n~~~~----------------------------------------------------~~p~~~~~l~~L~~L~ 170 (968)
T PLN00113 143 ETLDLSNNMLSG----------------------------------------------------EIPNDIGSFSSLKVLD 170 (968)
T ss_pred CEEECcCCcccc----------------------------------------------------cCChHHhcCCCCCEEE
Confidence 555555544432 2334444555566666
Q ss_pred ccCCcccccCchhhhhcCCCCcEEEccCCcCcCcCccCcCCCCCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcC
Q 003084 268 LSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNAL 347 (850)
Q Consensus 268 l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 347 (850)
+++|.+.+.+|..+ .++++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+.. +++|++|++++|.+
T Consensus 171 L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l 248 (968)
T PLN00113 171 LGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNL 248 (968)
T ss_pred CccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc-CCCCCEEECcCcee
Confidence 66666666666554 56677777777777776666666777777777777777777667666544 67788888887777
Q ss_pred cccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcC
Q 003084 348 DGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQS 427 (850)
Q Consensus 348 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 427 (850)
++..|..++++++|++|++++|.+.+.+|..+. .+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..
T Consensus 249 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~ 327 (968)
T PLN00113 249 TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA 327 (968)
T ss_pred ccccChhHhCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh
Confidence 777777777788888888888877766776654 3778888888888877777777778888888888888887777777
Q ss_pred CCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcC-CCccc
Q 003084 428 LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY-PLSIK 506 (850)
Q Consensus 428 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~ 506 (850)
+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+..|..++.+++|+.|++++|++.+..|..+. +++|+
T Consensus 328 ~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~ 407 (968)
T PLN00113 328 LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLR 407 (968)
T ss_pred HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCC
Confidence 77888888888888888777777788888888888888888777777787788888888888888777776554 66788
Q ss_pred EEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCC
Q 003084 507 QVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDN 586 (850)
Q Consensus 507 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 586 (850)
.|++++|.+++.++. .+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+..|..+ ..++|+.|++++|
T Consensus 408 ~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n 485 (968)
T PLN00113 408 RVRLQDNSFSGELPS-EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRN 485 (968)
T ss_pred EEECcCCEeeeECCh-hHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCC
Confidence 888888888777776 78899999999999999999999888999999999999999998888765 4689999999999
Q ss_pred cCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccc
Q 003084 587 NLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLV 666 (850)
Q Consensus 587 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 666 (850)
++++..|..+..+ ++|++|++++|++.
T Consensus 486 ~l~~~~~~~~~~l-----------------------------------------------------~~L~~L~Ls~N~l~ 512 (968)
T PLN00113 486 QFSGAVPRKLGSL-----------------------------------------------------SELMQLKLSENKLS 512 (968)
T ss_pred ccCCccChhhhhh-----------------------------------------------------hccCEEECcCCcce
Confidence 9998888777653 38999999999999
Q ss_pred cCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCcc
Q 003084 667 GHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTA 746 (850)
Q Consensus 667 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~ 746 (850)
+.+|+.+.++++|+.|+|++|.+++.+|..|+.+++|+.|||++|++++.+|..+..+++|+.+++++|+++|.+|.. +
T Consensus 513 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~ 591 (968)
T PLN00113 513 GEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-G 591 (968)
T ss_pred eeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999985 7
Q ss_pred ccCCCCccccCCCCCCCCCC
Q 003084 747 QFATFNKSSYDGNPFLCGLP 766 (850)
Q Consensus 747 ~~~~~~~~~~~~n~~~c~~~ 766 (850)
++.++....+.|||.+|+.+
T Consensus 592 ~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 592 AFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred hhcccChhhhcCCccccCCc
Confidence 88999999999999999754
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.3e-55 Score=533.97 Aligned_cols=520 Identities=32% Similarity=0.504 Sum_probs=469.1
Q ss_pred CCCCEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCCCCeEECcCCcCcCCCCcccccCCCCccEE
Q 003084 136 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIF 215 (850)
Q Consensus 136 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L 215 (850)
.+++.|++++|.+.+..+..|..+++|+.|++++|.+++.+|...+..+++|++|++++|.+.+..+.
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~------------ 136 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR------------ 136 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc------------
Confidence 46788888888888777778888888888888888887777775555778888888887776643321
Q ss_pred EccCCccccccccccCCCCccceeEEEccCCCCCCcccCccccCCCCccEEEccCCcccccCchhhhhcCCCCcEEEccC
Q 003084 216 DAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN 295 (850)
Q Consensus 216 ~l~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~ 295 (850)
..+++|++|++++|.+.+.+|..+ +.+++|++|++++
T Consensus 137 ------------------------------------------~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~ 173 (968)
T PLN00113 137 ------------------------------------------GSIPNLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGG 173 (968)
T ss_pred ------------------------------------------cccCCCCEEECcCCcccccCChHH-hcCCCCCEEECcc
Confidence 123467778888888888888875 7899999999999
Q ss_pred CcCcCcCccCcCCCCCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCc
Q 003084 296 DSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEI 375 (850)
Q Consensus 296 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 375 (850)
|.+.+..|..+.++++|++|++++|.+.+.+|..+.. +++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+
T Consensus 174 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 252 (968)
T PLN00113 174 NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPI 252 (968)
T ss_pred CcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcC-cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecccc
Confidence 9999999999999999999999999999888877655 889999999999999999999999999999999999999888
Q ss_pred chHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCC
Q 003084 376 PDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL 455 (850)
Q Consensus 376 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 455 (850)
|..+. .+++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+.++++|+.|++++|.+.+..|..+..+
T Consensus 253 p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 331 (968)
T PLN00113 253 PSSLG-NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL 331 (968)
T ss_pred ChhHh-CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcC
Confidence 87764 59999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcC-CCcccEEEccCcccccccCccccCCCCCCcEEE
Q 003084 456 KGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY-PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLD 534 (850)
Q Consensus 456 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 534 (850)
++|+.|++++|.+.+..|..+..+++|+.|++++|++.+..|..+. ..+++.+++++|.+.+.++. .+..+++|+.|+
T Consensus 332 ~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~-~~~~~~~L~~L~ 410 (968)
T PLN00113 332 PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK-SLGACRSLRRVR 410 (968)
T ss_pred CCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCH-HHhCCCCCCEEE
Confidence 9999999999999999999999999999999999999988887665 67899999999999988887 889999999999
Q ss_pred CcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCC
Q 003084 535 LSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKP 614 (850)
Q Consensus 535 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (850)
+++|++++..|..+..+++|+.|++++|.+.+.++..+..+++|+.|++++|++.+..|..+..
T Consensus 411 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~---------------- 474 (968)
T PLN00113 411 LQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS---------------- 474 (968)
T ss_pred CcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccccc----------------
Confidence 9999999999999999999999999999999999998999999999999999998877765431
Q ss_pred CcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCc
Q 003084 615 FKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIP 694 (850)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~ 694 (850)
++|+.||+++|++++..|..|.++++|+.|+|++|++++.+|
T Consensus 475 --------------------------------------~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 516 (968)
T PLN00113 475 --------------------------------------KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP 516 (968)
T ss_pred --------------------------------------ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCC
Confidence 279999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCccccCCCCccccCCCCCCCCCCC
Q 003084 695 LTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPL 767 (850)
Q Consensus 695 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l 767 (850)
..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|..+..+..+..+.+++|+..+..|.
T Consensus 517 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 517 DELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred hHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 9999999999999999999999999999999999999999999999999888899999999999999887663
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=6.6e-42 Score=348.47 Aligned_cols=374 Identities=25% Similarity=0.305 Sum_probs=243.8
Q ss_pred cEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccC
Q 003084 338 VYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEG 417 (850)
Q Consensus 338 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 417 (850)
+.|++++|.+....+..|.++++|+.+++.+|.++ .+|..... ..+++.|+|.+|.|.....+.+..++.|+.|||+.
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~-sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE-SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc-ccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 33444444444444444444444444444444444 44433221 23344444444444444444444445555555555
Q ss_pred CcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCC
Q 003084 418 NHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLP 497 (850)
Q Consensus 418 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 497 (850)
|.++.+...+|..-.++++|+|++|.|+..-...|..+.+|..|.++.|+++...+..|.++++|+.|+|..|+|....-
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ 238 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG 238 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh
Confidence 55543333344444455555555555554444445555555555555555554444555555555555555555442212
Q ss_pred CCcC-CCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCC
Q 003084 498 SCFY-PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLN 576 (850)
Q Consensus 498 ~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 576 (850)
..|. +++|+.|.+..|.+. .+.+++|.++.++++|+|+.|++...-..|+-++++|+.|++++|.|..+.++.+..++
T Consensus 239 ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq 317 (873)
T KOG4194|consen 239 LTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ 317 (873)
T ss_pred hhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcc
Confidence 2222 445555555555553 45566888888888888888888877778888888888888888888877788888888
Q ss_pred CCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCC
Q 003084 577 QLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLA 656 (850)
Q Consensus 577 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 656 (850)
+|++|+|+.|+|+...++.|.. ++.|+
T Consensus 318 kL~~LdLs~N~i~~l~~~sf~~-----------------------------------------------------L~~Le 344 (873)
T KOG4194|consen 318 KLKELDLSSNRITRLDEGSFRV-----------------------------------------------------LSQLE 344 (873)
T ss_pred cceeEeccccccccCChhHHHH-----------------------------------------------------HHHhh
Confidence 8888888888888777776654 33788
Q ss_pred eEEccCCccccCCCccccCCCCCCEEECcCCcCCccCc---ccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcc
Q 003084 657 GLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIP---LTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 733 (850)
Q Consensus 657 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 733 (850)
+|+|++|++.......|..+++|++|||++|.++..+. ..|.+|++|+.|++.+|++..+...+|++++.|+.||+.
T Consensus 345 ~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~ 424 (873)
T KOG4194|consen 345 ELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLG 424 (873)
T ss_pred hhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCC
Confidence 88888888887777778888888888888888876654 357778888888888888886666788888888888888
Q ss_pred CCcCcCCCCCCccccCCCCccccCCCCCCCCCCCC
Q 003084 734 YNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLP 768 (850)
Q Consensus 734 ~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~ 768 (850)
+|.|...-|.+|.++ .++++.+.--.++|+|.+.
T Consensus 425 ~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~ 458 (873)
T KOG4194|consen 425 DNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLK 458 (873)
T ss_pred CCcceeecccccccc-hhhhhhhcccceEEeccHH
Confidence 888888888887777 7788777777888998764
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-39 Score=330.71 Aligned_cols=372 Identities=27% Similarity=0.305 Sum_probs=261.8
Q ss_pred ccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEc
Q 003084 312 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL 391 (850)
Q Consensus 312 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 391 (850)
-+.||+++|++. .+...++..+++|+.+++..|.++ .+|........|+.|+|.+|.|+ ++.......++.|+.|||
T Consensus 80 t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 80 TQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDL 156 (873)
T ss_pred eeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhh
Confidence 345666666655 444444555566666666666655 45554444445666666666665 444444444566666666
Q ss_pred cCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccC
Q 003084 392 SNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGP 471 (850)
Q Consensus 392 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 471 (850)
+.|.|..+....|..-.++++|+|++|+|+......|..+.+|..|.|+.|+++...+..|.++++|+.|++..|++.-.
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 66666655555555555666666666666655555666666666666666666655555666666666666666666544
Q ss_pred cchhccCCCCCCEEeccCCcCCCCCCCCcC-CCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccC
Q 003084 472 IPVEFCRLDSLQILDISDNNISGSLPSCFY-PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDG 550 (850)
Q Consensus 472 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 550 (850)
....|.++++|+.|.+..|++...-...|. +.+++.|+|..|++. .+..+++.++++|+.|++++|.|..+.++..+.
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf 315 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF 315 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh-hhhcccccccchhhhhccchhhhheeecchhhh
Confidence 345566666666666666666655555544 556666666666664 445558888999999999999998888888888
Q ss_pred CCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhh
Q 003084 551 LSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEK 630 (850)
Q Consensus 551 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (850)
+++|+.|+|+.|+++...++.|..+..|++|.|++|.++.+....|..
T Consensus 316 tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~-------------------------------- 363 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG-------------------------------- 363 (873)
T ss_pred cccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH--------------------------------
Confidence 999999999999999888888998999999999999887665555544
Q ss_pred hhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCc---cccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEE
Q 003084 631 KILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPP---QIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 707 (850)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 707 (850)
+++|++|||++|.+++.+.+ .|.++++|+.|+|.+|++..+...+|.++.+|+.||
T Consensus 364 ---------------------lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~Ld 422 (873)
T KOG4194|consen 364 ---------------------LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLD 422 (873)
T ss_pred ---------------------hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceec
Confidence 34899999999988766543 488899999999999999987778999999999999
Q ss_pred CcCCcCcccCChhhhcCCCCCEEEccCCcCcCCC
Q 003084 708 LSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKI 741 (850)
Q Consensus 708 Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~ 741 (850)
|.+|.|..+-|++|..+ .|+.|-+..-.+-|.+
T Consensus 423 L~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDC 455 (873)
T KOG4194|consen 423 LGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDC 455 (873)
T ss_pred CCCCcceeecccccccc-hhhhhhhcccceEEec
Confidence 99999998999999998 8888877665554443
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=8.2e-39 Score=312.05 Aligned_cols=489 Identities=27% Similarity=0.365 Sum_probs=281.6
Q ss_pred CCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCCC
Q 003084 108 PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSI 187 (850)
Q Consensus 108 ~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L 187 (850)
..|+.|.+++|.+.. +. ..+.++..|.+|++++|++. ..|.+++.+.+++.++.++|.++ .+|. .+..+.+|
T Consensus 45 v~l~~lils~N~l~~----l~-~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~-~i~s~~~l 116 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEV----LR-EDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPE-QIGSLISL 116 (565)
T ss_pred cchhhhhhccCchhh----cc-HhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccH-HHhhhhhh
Confidence 345666666666643 22 35566666677777777666 45666666667777777777766 6666 66666666
Q ss_pred CeEECcCCcCcCCCCcccccCCCCccEEEccCCccccccccccCCCCccceeEEEccCCCCCCcccCccccCCCCccEEE
Q 003084 188 EELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAE 267 (850)
Q Consensus 188 ~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~ 267 (850)
..++.++|.+... + +.++.+..|+.++..+|++.. .|..+..+.++..++
T Consensus 117 ~~l~~s~n~~~el-~-~~i~~~~~l~dl~~~~N~i~s----------------------------lp~~~~~~~~l~~l~ 166 (565)
T KOG0472|consen 117 VKLDCSSNELKEL-P-DSIGRLLDLEDLDATNNQISS----------------------------LPEDMVNLSKLSKLD 166 (565)
T ss_pred hhhhccccceeec-C-chHHHHhhhhhhhcccccccc----------------------------CchHHHHHHHHHHhh
Confidence 6666666665521 1 123334444444443333321 122223333334444
Q ss_pred ccCCcccccCchhhhhcCCCCcEEEccCCcCcCcCccCcCCCCCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcC
Q 003084 268 LSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNAL 347 (850)
Q Consensus 268 l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 347 (850)
+.+++ +....+..+. +++|++||...|.+. .+|.+.+. +.+|..|++.+|++
T Consensus 167 ~~~n~-------------------------l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~-l~~L~~LyL~~Nki 218 (565)
T KOG0472|consen 167 LEGNK-------------------------LKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGG-LESLELLYLRRNKI 218 (565)
T ss_pred ccccc-------------------------hhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcc-hhhhHHHHhhhccc
Confidence 44443 3332222222 455555555555554 55555543 45555666666665
Q ss_pred cccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcC
Q 003084 348 DGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQS 427 (850)
Q Consensus 348 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 427 (850)
. ..| .|.++..|.+|.++.|.|. .+|.....++.++..||+.+|+++ ..|+.+.-+++|++||+++|.++ .+|.+
T Consensus 219 ~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~s 293 (565)
T KOG0472|consen 219 R-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYS 293 (565)
T ss_pred c-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcc
Confidence 5 344 5566666666666666666 666666656666666666666665 45555666666666666666665 44555
Q ss_pred CCCCCCCcEEECcCCCCCCCCcccccCCCC---CcEEE--CCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCC
Q 003084 428 LSKCSSLKGLYLNNNNLSGKIPRWLGNLKG---LQHIV--MPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYP 502 (850)
Q Consensus 428 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~---L~~L~--l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~ 502 (850)
++++ .|+.|-+.+|++..+- ..+-.... |++|. +..-.++..... +-.. .....+..|.....
T Consensus 294 Lgnl-hL~~L~leGNPlrTiR-r~ii~~gT~~vLKyLrs~~~~dglS~se~~------~e~~----~t~~~~~~~~~~~~ 361 (565)
T KOG0472|consen 294 LGNL-HLKFLALEGNPLRTIR-REIISKGTQEVLKYLRSKIKDDGLSQSEGG------TETA----MTLPSESFPDIYAI 361 (565)
T ss_pred cccc-eeeehhhcCCchHHHH-HHHHcccHHHHHHHHHHhhccCCCCCCccc------cccc----CCCCCCcccchhhh
Confidence 6666 6666666666654221 11111110 11110 000000000000 0000 00011222333334
Q ss_pred CcccEEEccCcccccccCccccCCCC--CCcEEECcCCcCCCCcCccccCCCCCCE-EECcCCcCccCCchhccCCCCCC
Q 003084 503 LSIKQVHLSKNMLHGQLKEGTFFNCS--SLVTLDLSYNYLNGSIPDWIDGLSQLSH-LNLAHNNLEGEVPIQLCRLNQLQ 579 (850)
Q Consensus 503 ~~L~~L~l~~n~~~~~~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~~l~~l~~L~ 579 (850)
.+.+.|++++-+++ .+|...|..-. -.+..+++.|++. .+|..+..+..+.+ +.+++|.+. .+|..++.+++|.
T Consensus 362 i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt 438 (565)
T KOG0472|consen 362 ITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLT 438 (565)
T ss_pred hhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcce
Confidence 45566666666654 34443444332 3667888888887 55666666655544 444555544 7778888888888
Q ss_pred EEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEE
Q 003084 580 LLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLD 659 (850)
Q Consensus 580 ~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 659 (850)
.|++++|.+...+.+ +.. +..|+.||
T Consensus 439 ~L~L~NN~Ln~LP~e-~~~-----------------------------------------------------lv~Lq~Ln 464 (565)
T KOG0472|consen 439 FLDLSNNLLNDLPEE-MGS-----------------------------------------------------LVRLQTLN 464 (565)
T ss_pred eeecccchhhhcchh-hhh-----------------------------------------------------hhhhheec
Confidence 888888877644322 222 23588888
Q ss_pred ccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCc
Q 003084 660 LSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 738 (850)
Q Consensus 660 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 738 (850)
+|.|++. .+|+....+..|+.+-.++|++....|+.+.+|.+|..|||.+|.+. .+|..++++++|+.|+++||++.
T Consensus 465 lS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 465 LSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 8888887 77888777778888888888888777777888888888898888888 77888888888888888888887
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=8e-38 Score=305.16 Aligned_cols=491 Identities=26% Similarity=0.367 Sum_probs=336.4
Q ss_pred CCCCCCCCCEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCCCCeEECcCCcCcCCCCcccccCCC
Q 003084 131 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHS 210 (850)
Q Consensus 131 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~ 210 (850)
....-..|+.+++++|.+... ...+.++..|++|++++|.++ ++|+ +++.+..++.++.++|++.. .+ ..+....
T Consensus 40 ~wW~qv~l~~lils~N~l~~l-~~dl~nL~~l~vl~~~~n~l~-~lp~-aig~l~~l~~l~vs~n~ls~-lp-~~i~s~~ 114 (565)
T KOG0472|consen 40 NWWEQVDLQKLILSHNDLEVL-REDLKNLACLTVLNVHDNKLS-QLPA-AIGELEALKSLNVSHNKLSE-LP-EQIGSLI 114 (565)
T ss_pred hhhhhcchhhhhhccCchhhc-cHhhhcccceeEEEeccchhh-hCCH-HHHHHHHHHHhhcccchHhh-cc-HHHhhhh
Confidence 445566788888888887743 445778888888888888887 7777 78888888888888887762 22 2233444
Q ss_pred CccEEEccCCccccccccccCCCCccceeEEEccCCCCCCcccCccccCCCCccEEEccCCcccccCchhhhhcCCCCcE
Q 003084 211 KLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEF 290 (850)
Q Consensus 211 ~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 290 (850)
+|..++++.|.+ .. +|+.+ +.+..++.
T Consensus 115 ~l~~l~~s~n~~---------------------------------------------------~e-l~~~i-~~~~~l~d 141 (565)
T KOG0472|consen 115 SLVKLDCSSNEL---------------------------------------------------KE-LPDSI-GRLLDLED 141 (565)
T ss_pred hhhhhhccccce---------------------------------------------------ee-cCchH-HHHhhhhh
Confidence 444444444332 21 12221 34445555
Q ss_pred EEccCCcCcCcCccCcCCCCCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCc
Q 003084 291 LYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK 370 (850)
Q Consensus 291 L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 370 (850)
++..+|++.. .|..+..+.++..+++.+|++. ..|..... +..|++++...|.++ .+|..++.+.+|+.|++..|+
T Consensus 142 l~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nk 217 (565)
T KOG0472|consen 142 LDATNNQISS-LPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNK 217 (565)
T ss_pred hhcccccccc-CchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcc
Confidence 5555555554 3555667778888888888887 66666555 678888888888776 778888888888888888888
Q ss_pred CCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcc
Q 003084 371 LTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPR 450 (850)
Q Consensus 371 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 450 (850)
+. .+|+ |.+|..|+++.++.|++.....+....++++..||+++|++. ..|+.+.-+++|++||+++|.++ ..|.
T Consensus 218 i~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~ 292 (565)
T KOG0472|consen 218 IR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPY 292 (565)
T ss_pred cc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCc
Confidence 88 7773 345788888888888887555555557888888888888887 66777777888888888888887 5677
Q ss_pred cccCCCCCcEEECCCCccccCcchhccCCCC---CCEEe--ccCCcCCCCCCCCcCCCcccEEEccCcccccccCcc---
Q 003084 451 WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDS---LQILD--ISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEG--- 522 (850)
Q Consensus 451 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~---L~~L~--ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~--- 522 (850)
.++++ .|+.|.+.+|.+..+-.+.+ +... |++|. +..-.++.. ...+-. .+..+..
T Consensus 293 sLgnl-hL~~L~leGNPlrTiRr~ii-~~gT~~vLKyLrs~~~~dglS~s-----e~~~e~---------~~t~~~~~~~ 356 (565)
T KOG0472|consen 293 SLGNL-HLKFLALEGNPLRTIRREII-SKGTQEVLKYLRSKIKDDGLSQS-----EGGTET---------AMTLPSESFP 356 (565)
T ss_pred ccccc-eeeehhhcCCchHHHHHHHH-cccHHHHHHHHHHhhccCCCCCC-----cccccc---------cCCCCCCccc
Confidence 78887 78888888887753222111 1111 11110 000011000 000000 0011111
Q ss_pred ccCCCCCCcEEECcCCcCCCCcCccccCCC--CCCEEECcCCcCccCCchhccCCCCCCE-EeCCCCcCCccCCCCcccC
Q 003084 523 TFFNCSSLVTLDLSYNYLNGSIPDWIDGLS--QLSHLNLAHNNLEGEVPIQLCRLNQLQL-LDLSDNNLHGLIPSCFDNT 599 (850)
Q Consensus 523 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~-L~Ls~n~l~~~~~~~~~~~ 599 (850)
......+.+.|++++-+++.+..+.|..-. -...++++.|++. ..|..+..+..+.+ +.+++|.+ +.+|..++.
T Consensus 357 ~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~- 433 (565)
T KOG0472|consen 357 DIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQ- 433 (565)
T ss_pred chhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHh-
Confidence 223345677788888777744334443322 2677888888887 56666655555443 34444443 344443333
Q ss_pred ccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCC
Q 003084 600 TLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRI 679 (850)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 679 (850)
+++|..|+|++|-+. .+|..++.+..|
T Consensus 434 ----------------------------------------------------l~kLt~L~L~NN~Ln-~LP~e~~~lv~L 460 (565)
T KOG0472|consen 434 ----------------------------------------------------LQKLTFLDLSNNLLN-DLPEEMGSLVRL 460 (565)
T ss_pred ----------------------------------------------------hhcceeeecccchhh-hcchhhhhhhhh
Confidence 448999999999988 789999999999
Q ss_pred CEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCccccCCCCccccCCC
Q 003084 680 QTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGN 759 (850)
Q Consensus 680 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n 759 (850)
+.||+|+|++. .+|..+-.+..|+.+-.++|++....|+.+.+|..|..||+.+|.+.. +|...+.++++..+.+.||
T Consensus 461 q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~-IPp~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 461 QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQ-IPPILGNMTNLRHLELDGN 538 (565)
T ss_pred heecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhh-CChhhccccceeEEEecCC
Confidence 99999999998 789888888889988889999998888889999999999999999995 5555799999999999999
Q ss_pred CCC
Q 003084 760 PFL 762 (850)
Q Consensus 760 ~~~ 762 (850)
|+.
T Consensus 539 pfr 541 (565)
T KOG0472|consen 539 PFR 541 (565)
T ss_pred ccC
Confidence 986
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=3.2e-34 Score=308.68 Aligned_cols=484 Identities=27% Similarity=0.365 Sum_probs=286.9
Q ss_pred ccEEecccCCcccccchhhHhhhcCCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCccccCCCCC
Q 003084 83 LEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSL 162 (850)
Q Consensus 83 L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 162 (850)
++.|++ ..|.+-....+.+.+ .-+|+.||+++|.+.. .| ..+..+++|+.|+++.|.+. ..|....++.+|
T Consensus 23 ~~~ln~--~~N~~l~~pl~~~~~-~v~L~~l~lsnn~~~~----fp-~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l 93 (1081)
T KOG0618|consen 23 LQILNL--RRNSLLSRPLEFVEK-RVKLKSLDLSNNQISS----FP-IQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNL 93 (1081)
T ss_pred HHhhhc--cccccccCchHHhhh-eeeeEEeecccccccc----CC-chhhhHHHHhhcccchhhHh-hCchhhhhhhcc
Confidence 555555 444333222222333 4447777777777654 33 35666777777777777665 445666677777
Q ss_pred CEEECCCCcCcCCCCcccccCCCCCCeEECcCCcCcCCCCcccccCCCCccEEEccCCccccccccccCCCCccceeEEE
Q 003084 163 RILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLS 242 (850)
Q Consensus 163 ~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ 242 (850)
+++.|.+|.+. .+|. .+..+.+|+.|++++|.+. ..|.. +..+..
T Consensus 94 ~~lnL~~n~l~-~lP~-~~~~lknl~~LdlS~N~f~-~~Pl~-i~~lt~------------------------------- 138 (1081)
T KOG0618|consen 94 QYLNLKNNRLQ-SLPA-SISELKNLQYLDLSFNHFG-PIPLV-IEVLTA------------------------------- 138 (1081)
T ss_pred hhheeccchhh-cCch-hHHhhhcccccccchhccC-CCchh-HHhhhH-------------------------------
Confidence 77777777765 6666 6777777777777777654 12211 111111
Q ss_pred ccCCCCCCcccCccccCCCCccEEEccCCcccccCchhhhhcCCCCcEEEccCCcCcCcCccCcCCCCCccEEEccCCcC
Q 003084 243 LSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNF 322 (850)
Q Consensus 243 ls~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 322 (850)
++.+..++|.....+ +. ..++.+++..|.+
T Consensus 139 --------------------~~~~~~s~N~~~~~l-----------------------------g~-~~ik~~~l~~n~l 168 (1081)
T KOG0618|consen 139 --------------------EEELAASNNEKIQRL-----------------------------GQ-TSIKKLDLRLNVL 168 (1081)
T ss_pred --------------------HHHHhhhcchhhhhh-----------------------------cc-ccchhhhhhhhhc
Confidence 111111111000000 00 0145666777777
Q ss_pred CcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccc
Q 003084 323 QGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFS 402 (850)
Q Consensus 323 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 402 (850)
.+.++.+... +.. .|+|.+|.+. ...+..+.+|+.+....|++. .+.. .-++|+.|+.++|.+....+.
T Consensus 169 ~~~~~~~i~~-l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls-~l~~----~g~~l~~L~a~~n~l~~~~~~ 237 (1081)
T KOG0618|consen 169 GGSFLIDIYN-LTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLS-ELEI----SGPSLTALYADHNPLTTLDVH 237 (1081)
T ss_pred ccchhcchhh-hhe--eeecccchhh---hhhhhhccchhhhhhhhcccc-eEEe----cCcchheeeeccCcceeeccc
Confidence 6666655543 222 5888888875 334566778888888888776 3332 246788888888887733322
Q ss_pred cccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCC
Q 003084 403 RIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 482 (850)
Q Consensus 403 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 482 (850)
..-.+|++++++.|+++ .+|.++..|.+|+.++..+|.++ ..|..+...++|+.|.+..|.+. -+|.......+|
T Consensus 238 --p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL 312 (1081)
T KOG0618|consen 238 --PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSL 312 (1081)
T ss_pred --cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCccccccee
Confidence 22356788888888877 45577778888888888888875 56666777777888888888776 345555667778
Q ss_pred CEEeccCCcCCCCCCCCcC---CCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEEC
Q 003084 483 QILDISDNNISGSLPSCFY---PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNL 559 (850)
Q Consensus 483 ~~L~ls~n~l~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 559 (850)
++|++..|++.. +|..+. ..+++.+..+.|.+.. .+...=...+.|+.|++.+|.+++..-..+.+.++|+.|+|
T Consensus 313 ~tLdL~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhL 390 (1081)
T KOG0618|consen 313 RTLDLQSNNLPS-LPDNFLAVLNASLNTLNVSSNKLST-LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHL 390 (1081)
T ss_pred eeeeehhccccc-cchHHHhhhhHHHHHHhhhhccccc-cccccchhhHHHHHHHHhcCcccccchhhhccccceeeeee
Confidence 888888887763 333222 2235566666665532 22212233456667777777776655555666677777777
Q ss_pred cCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhc
Q 003084 560 AHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFT 639 (850)
Q Consensus 560 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (850)
++|++.......+.++..|++|+||+|+++.++ .+...
T Consensus 391 syNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~----------------------------------------- 428 (1081)
T KOG0618|consen 391 SYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVAN----------------------------------------- 428 (1081)
T ss_pred cccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHh-----------------------------------------
Confidence 777776555555666677777777777665433 33322
Q ss_pred cccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCcc-CcccCCCCCCCCEEECcCCcCcccCC
Q 003084 640 TKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGT-IPLTFSNLRHIESLDLSYNKLSGKIP 718 (850)
Q Consensus 640 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p 718 (850)
++.|++|..-+|++. ..| .+..++.|+.+|+|.|+++.. +|.... -++|++||+++|.-....-
T Consensus 429 ------------~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~l~~d~ 493 (1081)
T KOG0618|consen 429 ------------LGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTRLVFDH 493 (1081)
T ss_pred ------------hhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCcccccch
Confidence 225666666666666 455 566677777777777766642 222222 2667777777776433444
Q ss_pred hhhhcCCCCCEEEccCC
Q 003084 719 RQLVDLNTLAIFIVAYN 735 (850)
Q Consensus 719 ~~l~~l~~L~~L~l~~N 735 (850)
..|..+.++...++.-|
T Consensus 494 ~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 494 KTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhHHhhhhhheecccC
Confidence 45555555555555555
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=2.3e-34 Score=309.76 Aligned_cols=442 Identities=29% Similarity=0.335 Sum_probs=246.2
Q ss_pred CcEEeCCCCcCCCcccCCcCCCCCcccEEecccCCcccccchhhHhhhcCCCCcEEEccCCCCCCCCCccCCcCCCCCCC
Q 003084 58 LKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAH 137 (850)
Q Consensus 58 L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~ 137 (850)
+++|+++.|-+.. .|.+...+.-+|+.|++ +++++. .+|..+.. +.+|+.|+++.|.|.. +| ....++.+
T Consensus 23 ~~~ln~~~N~~l~-~pl~~~~~~v~L~~l~l--snn~~~-~fp~~it~-l~~L~~ln~s~n~i~~----vp-~s~~~~~~ 92 (1081)
T KOG0618|consen 23 LQILNLRRNSLLS-RPLEFVEKRVKLKSLDL--SNNQIS-SFPIQITL-LSHLRQLNLSRNYIRS----VP-SSCSNMRN 92 (1081)
T ss_pred HHhhhcccccccc-CchHHhhheeeeEEeec--cccccc-cCCchhhh-HHHHhhcccchhhHhh----Cc-hhhhhhhc
Confidence 5666666655442 22223444455777777 555543 44555555 7788888888888865 44 47788999
Q ss_pred CCEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCCCCeEECcCCcCcCCCCcccccCCCCccEEEc
Q 003084 138 LQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDA 217 (850)
Q Consensus 138 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l 217 (850)
|+++.|..|++. ..|..+..+.+|++||+++|.+. .+|. .+..++.++.+..++|..... ++... .+.+++
T Consensus 93 l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl-~i~~lt~~~~~~~s~N~~~~~-----lg~~~-ik~~~l 163 (1081)
T KOG0618|consen 93 LQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPL-VIEVLTAEEELAASNNEKIQR-----LGQTS-IKKLDL 163 (1081)
T ss_pred chhheeccchhh-cCchhHHhhhcccccccchhccC-CCch-hHHhhhHHHHHhhhcchhhhh-----hcccc-chhhhh
Confidence 999999998877 77889999999999999999996 8888 899999999999999822211 11111 444444
Q ss_pred cCCccccccccccCCCCccceeEEEccCCCCCCcccCccccCCCCccEEEccCCcccccCchhhhhcCCCCcEEEccCCc
Q 003084 218 KNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDS 297 (850)
Q Consensus 218 ~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 297 (850)
..|.+... ++..+..+.. .+++++|.+.. . + ..++..|+.+....|.
T Consensus 164 ~~n~l~~~---------------------------~~~~i~~l~~--~ldLr~N~~~~-~-d--ls~~~~l~~l~c~rn~ 210 (1081)
T KOG0618|consen 164 RLNVLGGS---------------------------FLIDIYNLTH--QLDLRYNEMEV-L-D--LSNLANLEVLHCERNQ 210 (1081)
T ss_pred hhhhcccc---------------------------hhcchhhhhe--eeecccchhhh-h-h--hhhccchhhhhhhhcc
Confidence 44333211 1111111111 24444444431 0 0 1233444444444433
Q ss_pred CcCcCccCcCCCCCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcch
Q 003084 298 LAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPD 377 (850)
Q Consensus 298 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 377 (850)
+.... ..-+ +++.|+.++|.++...+. ..-.+|+++++++|+++ .+|+
T Consensus 211 ls~l~----~~g~-------------------------~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~ 258 (1081)
T KOG0618|consen 211 LSELE----ISGP-------------------------SLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPE 258 (1081)
T ss_pred cceEE----ecCc-------------------------chheeeeccCcceeeccc--cccccceeeecchhhhh-cchH
Confidence 33211 0123 444444444444421111 11234455555555555 4452
Q ss_pred HHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCC
Q 003084 378 HLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKG 457 (850)
Q Consensus 378 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 457 (850)
.+ ..|.+|+.++..+|.+. ..|..+....+|+.|.+..|.+. .+|....+.++|++|++..|++....+..+.....
T Consensus 259 wi-~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~ 335 (1081)
T KOG0618|consen 259 WI-GACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNA 335 (1081)
T ss_pred HH-HhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhH
Confidence 22 23555555555555553 44444445555555555555554 33334444555555555555555322222222222
Q ss_pred -CcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCC-CCCcCCCcccEEEccCcccccccCccccCCCCCCcEEEC
Q 003084 458 -LQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSL-PSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDL 535 (850)
Q Consensus 458 -L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L 535 (850)
++.+..+.|++.......=...+.|+.|.+.+|.++... |......+|+.|+|++|++ +.+|...+.++..|++|+|
T Consensus 336 ~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL-~~fpas~~~kle~LeeL~L 414 (1081)
T KOG0618|consen 336 SLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL-NSFPASKLRKLEELEELNL 414 (1081)
T ss_pred HHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc-ccCCHHHHhchHHhHHHhc
Confidence 444444444444222111112344555555555554332 2222244555555555555 2566667778888888888
Q ss_pred cCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCc
Q 003084 536 SYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHG 590 (850)
Q Consensus 536 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 590 (850)
|+|+++ .+|..+..++.|++|...+|++. ..| .+..+++|+.+|+|.|.++.
T Consensus 415 SGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 415 SGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred ccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhh
Confidence 888887 56677888888888888888887 555 67778888888888887753
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=2.6e-32 Score=280.39 Aligned_cols=363 Identities=26% Similarity=0.355 Sum_probs=176.1
Q ss_pred EEccCCcCc-ccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCC
Q 003084 340 FNISMNALD-GSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGN 418 (850)
Q Consensus 340 L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 418 (850)
+++++|.++ +..|.....|++++.|.|...++. .+|+.+.. +.+|++|.+++|++. .+...+..++.|+.+.+.+|
T Consensus 12 vDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~-lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N 88 (1255)
T KOG0444|consen 12 VDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSR-LQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDN 88 (1255)
T ss_pred ccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHH-HhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhcc
Confidence 333334333 233444444444444444444444 44444432 444444444444444 22333444445555555544
Q ss_pred cCcc-cCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCC
Q 003084 419 HFVG-EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLP 497 (850)
Q Consensus 419 ~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 497 (850)
++.. -+|..+.++..|+.||+++|++. ..|..+...+++-.|++++|+|..+....|.+++.|-.||+|+|++....|
T Consensus 89 ~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPP 167 (1255)
T KOG0444|consen 89 NLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPP 167 (1255)
T ss_pred ccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCH
Confidence 4432 23334444555555555555554 444445445555555555555544433444445555555555555544444
Q ss_pred CCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCC-CCcCccccCCCCCCEEECcCCcCccCCchhccCCC
Q 003084 498 SCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN-GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLN 576 (850)
Q Consensus 498 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 576 (850)
..-.+..|+.|.+++|.+. .+.-..+..+++|+.|.+++.+-+ ..+|..+.++.+|..+|++.|.+. ..|+.+..++
T Consensus 168 Q~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~ 245 (1255)
T KOG0444|consen 168 QIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLR 245 (1255)
T ss_pred HHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhh
Confidence 4444445555555555442 111113344555555566554332 234555556666666666666665 5566666666
Q ss_pred CCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCC
Q 003084 577 QLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLA 656 (850)
Q Consensus 577 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 656 (850)
+|+.|+||+|+|+..... .. ...+|+
T Consensus 246 ~LrrLNLS~N~iteL~~~-~~-----------------------------------------------------~W~~lE 271 (1255)
T KOG0444|consen 246 NLRRLNLSGNKITELNMT-EG-----------------------------------------------------EWENLE 271 (1255)
T ss_pred hhheeccCcCceeeeecc-HH-----------------------------------------------------HHhhhh
Confidence 666666666665432110 00 012455
Q ss_pred eEEccCCccccCCCccccCCCCCCEEECcCCcCCc-cCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCC
Q 003084 657 GLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTG-TIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN 735 (850)
Q Consensus 657 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N 735 (850)
+|++|+|+++ ..|.++..++.|+.|.+.+|+++- -+|.+++.+.+|+.+..++|.+. ..|+++..+..|+.|.++.|
T Consensus 272 tLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~N 349 (1255)
T KOG0444|consen 272 TLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHN 349 (1255)
T ss_pred hhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccc
Confidence 5555555555 455555555555555555555441 24555555555555555555554 45555555555555555555
Q ss_pred cCcCCCCCCccccCCCCccccCCCCCCCCC
Q 003084 736 NLSGKIPEWTAQFATFNKSSYDGNPFLCGL 765 (850)
Q Consensus 736 ~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~ 765 (850)
++. ..|+++.-++.+..+++..||.+--+
T Consensus 350 rLi-TLPeaIHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 350 RLI-TLPEAIHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred cee-echhhhhhcCCcceeeccCCcCccCC
Confidence 554 34444444444555555555544433
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=4.6e-32 Score=278.53 Aligned_cols=384 Identities=27% Similarity=0.366 Sum_probs=232.6
Q ss_pred CCccEEEccCCcccc-cCchhhhhcCCCCcEEEccCCcCcCcCccCcCCCCCccEEEccCCcCCcCCChhhhhcCCCCcE
Q 003084 261 HELKEAELSHIKMIG-EFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVY 339 (850)
Q Consensus 261 ~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 339 (850)
+-.+-+|+++|.+.| .+|..+ ..+++++.|.|....+.. +|..++.+.+|++|.+++|++. .+..++.. +|.|+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v-~qMt~~~WLkLnrt~L~~-vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~-Lp~LRs 82 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDV-EQMTQMTWLKLNRTKLEQ-VPEELSRLQKLEHLSMAHNQLI-SVHGELSD-LPRLRS 82 (1255)
T ss_pred ceeecccccCCcCCCCcCchhH-HHhhheeEEEechhhhhh-ChHHHHHHhhhhhhhhhhhhhH-hhhhhhcc-chhhHH
Confidence 334556666666663 455544 455666666665555443 3455555566666666666554 33333322 555566
Q ss_pred EEccCCcCc-ccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCC
Q 003084 340 FNISMNALD-GSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGN 418 (850)
Q Consensus 340 L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 418 (850)
+.+.+|++. ..+|..+..+..|+.||||+|+++ ++|..+-. -.++-.|++++|+|..+....|.++..|-.|||++|
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~-AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEY-AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhh-hcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 666555553 234555555555666666666655 55555432 445555555555555444444455555555555555
Q ss_pred cCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccc-cCcchhccCCCCCCEEeccCCcCCCCCC
Q 003084 419 HFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE-GPIPVEFCRLDSLQILDISDNNISGSLP 497 (850)
Q Consensus 419 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 497 (850)
++. .+|..+..+..|++|++++|++...--..+..+++|+.|.+++.+-+ .-+|..+..+.+|..+|+|.|++.
T Consensus 161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp---- 235 (1255)
T KOG0444|consen 161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP---- 235 (1255)
T ss_pred hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC----
Confidence 554 33444555555555555555554322233444445555555544322 123444445555555555555443
Q ss_pred CCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCC
Q 003084 498 SCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQ 577 (850)
Q Consensus 498 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 577 (850)
.+|+ .+..+++|+.|+||+|+|+. +....+.-.+|++|+++.|+++ ..|.+++.++.
T Consensus 236 --------------------~vPe-cly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~k 292 (1255)
T KOG0444|consen 236 --------------------IVPE-CLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTK 292 (1255)
T ss_pred --------------------cchH-HHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHH
Confidence 3444 67778889999999998884 3344556678889999999988 78888888999
Q ss_pred CCEEeCCCCcCCcc-CCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCC
Q 003084 578 LQLLDLSDNNLHGL-IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLA 656 (850)
Q Consensus 578 L~~L~Ls~n~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 656 (850)
|+.|.+.+|+++-. +|..++. +..|+
T Consensus 293 L~kLy~n~NkL~FeGiPSGIGK-----------------------------------------------------L~~Le 319 (1255)
T KOG0444|consen 293 LTKLYANNNKLTFEGIPSGIGK-----------------------------------------------------LIQLE 319 (1255)
T ss_pred HHHHHhccCcccccCCccchhh-----------------------------------------------------hhhhH
Confidence 99999988887521 3333332 33678
Q ss_pred eEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcc
Q 003084 657 GLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 733 (850)
Q Consensus 657 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 733 (850)
++..++|.+. .+|+.+..+..|+.|.|++|++. ..|+++.-++.|+.||+..|+-..-.|.--..-++|+.-++.
T Consensus 320 vf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 320 VFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred HHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence 8888888886 78888888888888999888887 678888888888889988887764333221122455555444
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.92 E-value=4.6e-27 Score=230.06 Aligned_cols=251 Identities=23% Similarity=0.234 Sum_probs=142.7
Q ss_pred CccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccC-CcCCCCcchHHhhcCCCCCEE
Q 003084 311 RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSN-NKLTGEIPDHLAMCCVNLEFL 389 (850)
Q Consensus 311 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L 389 (850)
....++|..|.|+ .+|...|+.+++|+.|+|++|.|+.+.|++|.++++|..|-+.+ |+|+ .+|...|.++..++.|
T Consensus 68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence 4456666677776 67777776677777777777777766777777777666665555 6666 6777777777777777
Q ss_pred EccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCC------------CCCcccccCCCC
Q 003084 390 SLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLS------------GKIPRWLGNLKG 457 (850)
Q Consensus 390 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------------~~~~~~~~~l~~ 457 (850)
.+.-|++.....+.|..++++..|.+.+|.+..+-..+|..+..++.+.+..|.+. ...|..++....
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 77777776666667777777777777777766444446666667777766666521 111122222221
Q ss_pred CcEEECCCCcccc-------------------------C-cchhccCCCCCCEEeccCCcCCCCCCCCcC-CCcccEEEc
Q 003084 458 LQHIVMPKNHLEG-------------------------P-IPVEFCRLDSLQILDISDNNISGSLPSCFY-PLSIKQVHL 510 (850)
Q Consensus 458 L~~L~l~~n~l~~-------------------------~-~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~l 510 (850)
.....+.+.++.. + ....|..+++|++|++++|+++++.+.+|. ...+++|.|
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 1111122222221 1 223455666666666666666655555444 334555555
Q ss_pred cCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcC
Q 003084 511 SKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNL 564 (850)
Q Consensus 511 ~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 564 (850)
..|++. .+..+.|.++..|+.|+|.+|+|+...|.+|..+.+|.+|+|-.|++
T Consensus 306 ~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 306 TRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred CcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 555552 33333555555555555555555555555555555555555544443
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=2.7e-26 Score=224.71 Aligned_cols=282 Identities=21% Similarity=0.235 Sum_probs=216.2
Q ss_pred EEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccC
Q 003084 314 FLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 393 (850)
Q Consensus 314 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~ 393 (850)
..+-++-.++ ++|..+ .+..+.++|..|.|+.+.+.+|+.+++|+.|||++|.|+ .|....|.+++++..|-+.+
T Consensus 50 ~VdCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg 124 (498)
T KOG4237|consen 50 IVDCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYG 124 (498)
T ss_pred eEEccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhc
Confidence 3455555565 777765 358899999999999888889999999999999999999 88888889999988776666
Q ss_pred -CccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccc---
Q 003084 394 -NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE--- 469 (850)
Q Consensus 394 -n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--- 469 (850)
|+|+....+.|.++..++.|.+.-|++.....+.|..++++..|.+.+|.+..+....|..+.+++.+.+..|.+.
T Consensus 125 ~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdC 204 (498)
T KOG4237|consen 125 NNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDC 204 (498)
T ss_pred CCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccc
Confidence 8999888889999999999999999999888889999999999999999998665568889999999998888732
Q ss_pred ---------cCcchhccCCCCCCEEeccCCcCCCCCCCCcCCC--cccEEEccCcccccccCccccCCCCCCcEEECcCC
Q 003084 470 ---------GPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL--SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYN 538 (850)
Q Consensus 470 ---------~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n 538 (850)
...|..++.........+.+.++....+..|... ++..-..+.+...+..|...|..+++|++|+|++|
T Consensus 205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN 284 (498)
T KOG4237|consen 205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN 284 (498)
T ss_pred ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC
Confidence 1222333333333333344444433323223222 22222233344445666667888899999999999
Q ss_pred cCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCc
Q 003084 539 YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT 600 (850)
Q Consensus 539 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 600 (850)
+++++.+.+|.+...+++|.|..|++.......|.++..|+.|+|.+|+|+...|..|....
T Consensus 285 ~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~ 346 (498)
T KOG4237|consen 285 KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF 346 (498)
T ss_pred ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccc
Confidence 99888888899999999999999988877777888888999999999999888888887654
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=2e-22 Score=245.44 Aligned_cols=339 Identities=22% Similarity=0.259 Sum_probs=184.9
Q ss_pred cCCCCCccEEEccCCc------CCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHH
Q 003084 306 IHSHKRLRFLDVSNNN------FQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHL 379 (850)
Q Consensus 306 ~~~~~~L~~L~Ls~n~------l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 379 (850)
|..+++|+.|.+..+. +...+|..+....++|+.|.+.++.+. .+|..| ...+|+.|++++|++. .++..+
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~ 630 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGV 630 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccccc
Confidence 4555666666554432 112334443333345666666666554 445444 3456666666666655 454443
Q ss_pred hhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCc
Q 003084 380 AMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQ 459 (850)
Q Consensus 380 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 459 (850)
..+++|+.|+++++.....+|. +..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+ ++++|+
T Consensus 631 -~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~ 707 (1153)
T PLN03210 631 -HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLY 707 (1153)
T ss_pred -ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCC
Confidence 2356666666665543333332 5555666666666655544555556666666666666654333444433 456666
Q ss_pred EEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCccccc------ccCccccCCCCCCcEE
Q 003084 460 HIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHG------QLKEGTFFNCSSLVTL 533 (850)
Q Consensus 460 ~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~------~~~~~~~~~~~~L~~L 533 (850)
.|++++|......|.. .++|+.|++++|.+. .+|....+++|+.|.+.++.... .++...+..+++|+.|
T Consensus 708 ~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L 783 (1153)
T PLN03210 708 RLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRL 783 (1153)
T ss_pred EEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchhe
Confidence 6666665443333321 345566666666654 34444445555555555432110 0011112234566777
Q ss_pred ECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCC
Q 003084 534 DLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDK 613 (850)
Q Consensus 534 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (850)
++++|.....+|..++++++|+.|++++|...+.+|... ++++|+.|++++|......|..
T Consensus 784 ~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~------------------ 844 (1153)
T PLN03210 784 FLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI------------------ 844 (1153)
T ss_pred eCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc------------------
Confidence 777766555666666777777777777665443455444 5667777777766432222111
Q ss_pred CCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccC
Q 003084 614 PFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTI 693 (850)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 693 (850)
.++|++|+|++|.++ .+|..+..+++|+.|+|++|+-...+
T Consensus 845 --------------------------------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l 885 (1153)
T PLN03210 845 --------------------------------------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRV 885 (1153)
T ss_pred --------------------------------------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCcc
Confidence 125677777777776 46666777777777777764433345
Q ss_pred cccCCCCCCCCEEECcCCc
Q 003084 694 PLTFSNLRHIESLDLSYNK 712 (850)
Q Consensus 694 ~~~~~~l~~L~~L~Ls~N~ 712 (850)
|..+..+++|+.+++++|.
T Consensus 886 ~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 886 SLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CcccccccCCCeeecCCCc
Confidence 6666667777777777664
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=4.2e-22 Score=242.73 Aligned_cols=342 Identities=21% Similarity=0.258 Sum_probs=271.7
Q ss_pred CChhhhhcCCCCcEEEccCCcC------cccCcccccCCC-CCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCc
Q 003084 326 IPVEIGDILPSLVYFNISMNAL------DGSIPSSFGNVI-FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKG 398 (850)
Q Consensus 326 ~~~~~~~~l~~L~~L~L~~n~l------~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 398 (850)
+....|..+++|+.|.+..+.. ...+|..+..++ +|+.|.+.++.+. .+|..+ ...+|+.|++.+|.+.
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~- 624 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE- 624 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-
Confidence 4556677799999999976542 234566676664 6999999999998 888876 3789999999999987
Q ss_pred cccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccC
Q 003084 399 HIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR 478 (850)
Q Consensus 399 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 478 (850)
.++..+..+++|+.|+++++.....+|. +..+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..+ +
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~ 702 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N 702 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence 5667788999999999999876556664 7889999999999998777889999999999999999986555666655 7
Q ss_pred CCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCC-------CCcCccccCC
Q 003084 479 LDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN-------GSIPDWIDGL 551 (850)
Q Consensus 479 l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~-------~~~~~~~~~l 551 (850)
+++|+.|++++|.....+|.. ..+|+.|++++|.+. .+|. .+ .+++|+.|++.++... ...+..+..+
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~-~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE-EFPS-NL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLS 777 (1153)
T ss_pred CCCCCEEeCCCCCCccccccc--cCCcCeeecCCCccc-cccc-cc-cccccccccccccchhhccccccccchhhhhcc
Confidence 899999999999766566543 468999999999885 4554 22 5788888988874422 1222233446
Q ss_pred CCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhh
Q 003084 552 SQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKK 631 (850)
Q Consensus 552 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (850)
++|+.|++++|...+.+|..+.++++|+.|++++|...+.+|... .
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~--------------------------------- 823 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N--------------------------------- 823 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C---------------------------------
Confidence 789999999998887899999999999999999986544444332 1
Q ss_pred hhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCC
Q 003084 632 ILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 711 (850)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 711 (850)
+++|+.|++++|.....+|.. .++|+.|+|++|.++ .+|..+..+++|+.|++++|
T Consensus 824 --------------------L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 824 --------------------LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGC 879 (1153)
T ss_pred --------------------ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCC
Confidence 348999999998765556643 468999999999998 67889999999999999995
Q ss_pred cCcccCChhhhcCCCCCEEEccCCc
Q 003084 712 KLSGKIPRQLVDLNTLAIFIVAYNN 736 (850)
Q Consensus 712 ~l~~~~p~~l~~l~~L~~L~l~~N~ 736 (850)
+-...+|..+..+++|+.+++++|.
T Consensus 880 ~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 880 NNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCcCccCcccccccCCCeeecCCCc
Confidence 5444688888899999999999984
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=2.5e-20 Score=209.52 Aligned_cols=63 Identities=27% Similarity=0.362 Sum_probs=28.9
Q ss_pred cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhh
Q 003084 654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQL 721 (850)
Q Consensus 654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 721 (850)
+|+.|++++|++++ +|.. ..+|+.|++++|+++ .+|..+..+++|+.|+|++|++++..|..+
T Consensus 403 ~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 403 ELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 34445555555542 3322 123444555555554 344444445555555555555554444433
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.82 E-value=1.7e-19 Score=202.95 Aligned_cols=266 Identities=27% Similarity=0.320 Sum_probs=169.2
Q ss_pred CccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEE
Q 003084 311 RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLS 390 (850)
Q Consensus 311 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 390 (850)
.-..|+++.+.++ .+|..+. ++|+.|++.+|.++ .+|. ..++|++|++++|+++ .+|.. .++|+.|+
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~ 268 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL----PPGLLELS 268 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc----ccccceee
Confidence 3457788888887 6776553 36778888888777 3453 2467777777777777 56642 35677777
Q ss_pred ccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCcccc
Q 003084 391 LSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG 470 (850)
Q Consensus 391 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 470 (850)
+++|.+.. +|.. ..+|+.|++++|+++. +|. ..++|+.|++++|++++ +|.. ...|+.|++++|.+++
T Consensus 269 Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~ 336 (788)
T PRK15387 269 IFSNPLTH-LPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS 336 (788)
T ss_pred ccCCchhh-hhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc
Confidence 77776653 2222 2456666666666652 332 12456666666666653 2321 1245555555555543
Q ss_pred CcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccC
Q 003084 471 PIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDG 550 (850)
Q Consensus 471 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 550 (850)
+|.. ..+|+.|++++|++++ +|. ..++|+.|++++|+++. +|..
T Consensus 337 -LP~l---p~~Lq~LdLS~N~Ls~------------------------LP~----lp~~L~~L~Ls~N~L~~-LP~l--- 380 (788)
T PRK15387 337 -LPTL---PSGLQELSVSDNQLAS------------------------LPT----LPSELYKLWAYNNRLTS-LPAL--- 380 (788)
T ss_pred -cccc---ccccceEecCCCccCC------------------------CCC----CCcccceehhhcccccc-Cccc---
Confidence 2211 1245555555555442 222 12456777788887774 4432
Q ss_pred CCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhh
Q 003084 551 LSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEK 630 (850)
Q Consensus 551 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (850)
..+|+.|++++|++++ +|.. .++|+.|++++|+++++ |..
T Consensus 381 ~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~LssI-P~l----------------------------------- 420 (788)
T PRK15387 381 PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTSL-PML----------------------------------- 420 (788)
T ss_pred ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCCC-Ccc-----------------------------------
Confidence 3568888888888874 4432 36788999999988754 221
Q ss_pred hhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCC
Q 003084 631 KILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSN 699 (850)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 699 (850)
+..|+.|++++|+++ .+|..+.++++|+.|+|++|++++..+..+..
T Consensus 421 ---------------------~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 421 ---------------------PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred ---------------------hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 125778999999998 68889999999999999999999887776643
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.73 E-value=1.7e-17 Score=188.47 Aligned_cols=182 Identities=29% Similarity=0.434 Sum_probs=99.1
Q ss_pred CCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEEC
Q 003084 384 VNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVM 463 (850)
Q Consensus 384 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 463 (850)
.+...|+++++.++. +|..+. +.|+.|++++|+++ .+|..+. ++|+.|++++|.++ .+|..+. ++|+.|++
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 346677777777763 344332 46777777777777 3444333 46777777777776 3454443 46777777
Q ss_pred CCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCC
Q 003084 464 PKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGS 543 (850)
Q Consensus 464 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 543 (850)
++|.+. .+|..+. .+|+.|++++|++.. +|..+ +.+|+.|++++|.+++ +|. .+ .++|+.|++++|.++.
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l-~~sL~~L~Ls~N~Lt~-LP~-~l--p~sL~~L~Ls~N~Lt~- 318 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKISC-LPENL-PEELRYLSVYDNSIRT-LPA-HL--PSGITHLNVQSNSLTA- 318 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccCc-ccccc-CCCCcEEECCCCcccc-Ccc-cc--hhhHHHHHhcCCcccc-
Confidence 777776 3444442 367777777777663 33322 2356666666665542 222 11 1345555555555553
Q ss_pred cCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCC
Q 003084 544 IPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 589 (850)
Q Consensus 544 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 589 (850)
+|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++
T Consensus 319 LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 319 LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT 359 (754)
T ss_pred CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC
Confidence 22222 2455555555555553 333332 45555555555544
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.73 E-value=7.8e-18 Score=191.15 Aligned_cols=204 Identities=27% Similarity=0.396 Sum_probs=114.1
Q ss_pred CCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeec
Q 003084 336 SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLL 415 (850)
Q Consensus 336 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 415 (850)
+...|+++++.++ .+|..+. +.|+.|++++|+++ .+|..++ .+|++|++++|.+.. +|..+. ++|+.|++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS-IPATLP--DTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc-CChhhh--ccccEEEC
Confidence 4566777777666 3454432 45777777777777 6666543 466677777666653 333332 34566666
Q ss_pred cCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCC
Q 003084 416 EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGS 495 (850)
Q Consensus 416 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ 495 (850)
++|.+. .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|++++ +|..+
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l------------------- 302 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHL------------------- 302 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccc-------------------
Confidence 666655 3343332 34555555555555 2333332 345555555555442 22211
Q ss_pred CCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCC
Q 003084 496 LPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRL 575 (850)
Q Consensus 496 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 575 (850)
+.+|+.|++++|.++. +|. . ..++|+.|++++|.+++ +|..+ .++|+.|++++|+++ .+|..+.
T Consensus 303 ------p~sL~~L~Ls~N~Lt~-LP~-~--l~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~lp-- 366 (754)
T PRK15370 303 ------PSGITHLNVQSNSLTA-LPE-T--LPPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETLP-- 366 (754)
T ss_pred ------hhhHHHHHhcCCcccc-CCc-c--ccccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhhc--
Confidence 2244555555555432 222 1 12567777888887774 44443 267888888888877 4554442
Q ss_pred CCCCEEeCCCCcCCcc
Q 003084 576 NQLQLLDLSDNNLHGL 591 (850)
Q Consensus 576 ~~L~~L~Ls~n~l~~~ 591 (850)
++|+.|++++|+++.+
T Consensus 367 ~~L~~LdLs~N~Lt~L 382 (754)
T PRK15370 367 PTITTLDVSRNALTNL 382 (754)
T ss_pred CCcCEEECCCCcCCCC
Confidence 5788888888877643
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=6.7e-19 Score=187.13 Aligned_cols=83 Identities=24% Similarity=0.297 Sum_probs=39.1
Q ss_pred cCCeEEccCCccccCCCcccc-----CCCCCCEEECcCCcCCc----cCcccCCCCCCCCEEECcCCcCccc----CChh
Q 003084 654 LLAGLDLSCNKLVGHIPPQIG-----NLTRIQTLNLSHNNLTG----TIPLTFSNLRHIESLDLSYNKLSGK----IPRQ 720 (850)
Q Consensus 654 ~L~~L~Ls~n~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~ 720 (850)
+|++|++++|.+++.....+. ..+.|+.|++++|.++. .+...+..+++|+.+++++|.++.. ....
T Consensus 222 ~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~ 301 (319)
T cd00116 222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES 301 (319)
T ss_pred CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence 455555555555432111111 12456666666665541 1223344445566666666666533 2233
Q ss_pred hhcC-CCCCEEEccCCc
Q 003084 721 LVDL-NTLAIFIVAYNN 736 (850)
Q Consensus 721 l~~l-~~L~~L~l~~N~ 736 (850)
+... +.|+.+++.+|+
T Consensus 302 ~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 302 LLEPGNELESLWVKDDS 318 (319)
T ss_pred HhhcCCchhhcccCCCC
Confidence 3333 455555555554
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=2e-18 Score=183.43 Aligned_cols=218 Identities=23% Similarity=0.294 Sum_probs=126.8
Q ss_pred CCCCCCCcEEECcCCCCCCCCcccccCCCC---CcEEECCCCccccC----cchhccCC-CCCCEEeccCCcCCCCCCCC
Q 003084 428 LSKCSSLKGLYLNNNNLSGKIPRWLGNLKG---LQHIVMPKNHLEGP----IPVEFCRL-DSLQILDISDNNISGSLPSC 499 (850)
Q Consensus 428 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~---L~~L~l~~n~l~~~----~~~~~~~l-~~L~~L~ls~n~l~~~~~~~ 499 (850)
+..+++|+.|++++|.+.+..+..+..+.. |++|++++|++.+. ....+..+ ++|+.|++++|.+++...
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~-- 154 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC-- 154 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH--
Confidence 444556666666666555433333333333 66666666655421 12233344 556666666665542110
Q ss_pred cCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCC----cCccccCCCCCCEEECcCCcCccCC----chh
Q 003084 500 FYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGS----IPDWIDGLSQLSHLNLAHNNLEGEV----PIQ 571 (850)
Q Consensus 500 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~ 571 (850)
..+.. .+..+++|++|++++|.+++. ++..+..+++|+.|++++|.+.+.. +..
T Consensus 155 -----------------~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 155 -----------------EALAK-ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred -----------------HHHHH-HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 01111 455667788888888777642 2233445568888888888776332 334
Q ss_pred ccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhh
Q 003084 572 LCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRV 651 (850)
Q Consensus 572 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (850)
+..+++|++|++++|++++.....+...- . ..
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~----------------------------------------------~--~~ 248 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASAL----------------------------------------------L--SP 248 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHH----------------------------------------------h--cc
Confidence 56678888888888877642111110000 0 00
Q ss_pred hccCCeEEccCCcccc----CCCccccCCCCCCEEECcCCcCCcc----CcccCCCC-CCCCEEECcCCcC
Q 003084 652 LSLLAGLDLSCNKLVG----HIPPQIGNLTRIQTLNLSHNNLTGT----IPLTFSNL-RHIESLDLSYNKL 713 (850)
Q Consensus 652 l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l-~~L~~L~Ls~N~l 713 (850)
.+.|++|++++|.++. .++..+..+++|+.+++++|.++.. ....+... +.|+++++.+|++
T Consensus 249 ~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 249 NISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 2478899999998862 2334566678899999999999854 34444445 7899999988864
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1.4e-17 Score=144.79 Aligned_cols=160 Identities=31% Similarity=0.490 Sum_probs=100.4
Q ss_pred CCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCcccccc
Q 003084 526 NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESY 605 (850)
Q Consensus 526 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 605 (850)
++..++.|.+++|+++ ..|..++.+.+|+.|++.+|++. ..|..+..+++|+.|+++-|++. ..|..|+..
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~------ 101 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF------ 101 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCC------
Confidence 3445555566666665 33444556666666666666665 45555666666666666666553 334444432
Q ss_pred CCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCcccc-CCCccccCCCCCCEEEC
Q 003084 606 NNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG-HIPPQIGNLTRIQTLNL 684 (850)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L 684 (850)
+.|+.|||.+|++.+ ..|..|..++.|+-|+|
T Consensus 102 -----------------------------------------------p~levldltynnl~e~~lpgnff~m~tlralyl 134 (264)
T KOG0617|consen 102 -----------------------------------------------PALEVLDLTYNNLNENSLPGNFFYMTTLRALYL 134 (264)
T ss_pred -----------------------------------------------chhhhhhccccccccccCCcchhHHHHHHHHHh
Confidence 256666666665543 35666667777777777
Q ss_pred cCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCC
Q 003084 685 SHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 743 (850)
Q Consensus 685 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~ 743 (850)
++|.+. .+|..++++++|+.|.+++|.+. .+|..+..++.|+.|.+.+|+++..+|+
T Consensus 135 ~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 135 GDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred cCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChh
Confidence 777776 66667777777777777777776 6677777777777777777777755555
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=4.8e-17 Score=141.42 Aligned_cols=170 Identities=31% Similarity=0.508 Sum_probs=138.4
Q ss_pred CCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCC
Q 003084 496 LPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRL 575 (850)
Q Consensus 496 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 575 (850)
++..+....++.|.+++|.++ .+|. .+..+.+|+.|++++|+++ ..|..++.+++|+.|+++-|++. ..|..|+.+
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~-~vpp-nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~ 101 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLT-VVPP-NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF 101 (264)
T ss_pred cccccchhhhhhhhcccCcee-ecCC-cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCC
Confidence 344445556666667777665 3444 5778899999999999998 66788999999999999999998 889999999
Q ss_pred CCCCEEeCCCCcCCcc-CCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhcc
Q 003084 576 NQLQLLDLSDNNLHGL-IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSL 654 (850)
Q Consensus 576 ~~L~~L~Ls~n~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 654 (850)
|.|+.||+.+|++... .|+.|-. +..
T Consensus 102 p~levldltynnl~e~~lpgnff~-----------------------------------------------------m~t 128 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFY-----------------------------------------------------MTT 128 (264)
T ss_pred chhhhhhccccccccccCCcchhH-----------------------------------------------------HHH
Confidence 9999999999987642 3333322 337
Q ss_pred CCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCC
Q 003084 655 LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN 725 (850)
Q Consensus 655 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 725 (850)
|+.|+|+.|.+. .+|...+.+++|+.|.+.+|.+. ..|..++.++.|+.|.+.+|+++ .+|..+..+.
T Consensus 129 lralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~ 196 (264)
T KOG0617|consen 129 LRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLD 196 (264)
T ss_pred HHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhh
Confidence 888999999998 78899999999999999999998 78999999999999999999999 6676666543
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.51 E-value=4e-14 Score=160.96 Aligned_cols=118 Identities=36% Similarity=0.628 Sum_probs=106.8
Q ss_pred cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcc
Q 003084 654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 733 (850)
Q Consensus 654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 733 (850)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+++.+|..++.+++|+.|||++|++++.+|+.+.++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcCCCCCCccc-cCCCCccccCCCCCCCCCCCC-CCC
Q 003084 734 YNNLSGKIPEWTAQ-FATFNKSSYDGNPFLCGLPLP-ICR 771 (850)
Q Consensus 734 ~N~l~~~~p~~~~~-~~~~~~~~~~~n~~~c~~~l~-~c~ 771 (850)
+|+++|.+|..+.. ........+.+|+.+|++|.. .|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 99999999986644 234556789999999987643 564
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.21 E-value=5.6e-11 Score=135.41 Aligned_cols=114 Identities=32% Similarity=0.515 Sum_probs=101.1
Q ss_pred CCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCC
Q 003084 577 QLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLA 656 (850)
Q Consensus 577 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 656 (850)
.++.|+|++|.+.+.+|..+..+. +|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~-----------------------------------------------------~L~ 445 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLR-----------------------------------------------------HLQ 445 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCC-----------------------------------------------------CCC
Confidence 367889999998888887766544 899
Q ss_pred eEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcC-CCCCEEEccCC
Q 003084 657 GLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL-NTLAIFIVAYN 735 (850)
Q Consensus 657 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~l~~N 735 (850)
.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|..++.+++|+.|+|++|++++.+|..+..+ ..+..+++.+|
T Consensus 446 ~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred EEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988764 56788999999
Q ss_pred cCcCCCCC
Q 003084 736 NLSGKIPE 743 (850)
Q Consensus 736 ~l~~~~p~ 743 (850)
+..|..|.
T Consensus 526 ~~lc~~p~ 533 (623)
T PLN03150 526 AGLCGIPG 533 (623)
T ss_pred ccccCCCC
Confidence 87665554
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.2e-11 Score=124.61 Aligned_cols=216 Identities=24% Similarity=0.242 Sum_probs=140.6
Q ss_pred CCCCCCEEeCCCCcCCccccCccccCCCCCCCEEEcCCCCCcccch-hhhhccCCCCcEEeCCCCcCCCcccCCcCCCCC
Q 003084 3 SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLL-QSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFK 81 (850)
Q Consensus 3 ~l~~L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~ 81 (850)
++..|++..|.++.+..... .+....|++++.||||.|-+..-.+ ..+..-+|+|+.|+|+.|++..-.....-..++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~-~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGI-EEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccch-hhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 46677888887776664420 1356678888888888886553211 133333888888888888875333322234667
Q ss_pred cccEEecccCCcccccchhhHhhhcCCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCcccccc-CccccCCC
Q 003084 82 SLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSL-PWCLANTT 160 (850)
Q Consensus 82 ~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~ 160 (850)
+|+.|.| +.|.++..-...+...+|+|+.|++.+|.... +.......+..|++|||++|++.... -...+.++
T Consensus 198 ~lK~L~l--~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~----~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~ 271 (505)
T KOG3207|consen 198 HLKQLVL--NSCGLSWKDVQWILLTFPSLEVLYLEANEIIL----IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLP 271 (505)
T ss_pred hhheEEe--ccCCCCHHHHHHHHHhCCcHHHhhhhcccccc----eecchhhhhhHHhhccccCCccccccccccccccc
Confidence 8888888 77776655444444458888888888885322 33334455778888888888776432 13456788
Q ss_pred CCCEEECCCCcCcCCCCcccc------cCCCCCCeEECcCCcCcCCCCcccccCCCCccEEEccCCcccccc
Q 003084 161 SLRILDVSFNQLTGSISSSPL------VHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEI 226 (850)
Q Consensus 161 ~L~~L~Ls~n~i~~~i~~~~~------~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 226 (850)
.|+.|+++.+.+. ++..... ..+++|+.|+++.|++..--....+..+++|+.+.+..|.+....
T Consensus 272 ~L~~Lnls~tgi~-si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~ 342 (505)
T KOG3207|consen 272 GLNQLNLSSTGIA-SIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKET 342 (505)
T ss_pred chhhhhccccCcc-hhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccccc
Confidence 8888888888876 3322122 456788888888888754344455666677777777777665443
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.10 E-value=2.5e-12 Score=133.36 Aligned_cols=176 Identities=32% Similarity=0.460 Sum_probs=138.0
Q ss_pred CcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEe
Q 003084 503 LSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLD 582 (850)
Q Consensus 503 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 582 (850)
.--...+++.|++. .+|. .+..+..|+.+.+..|.+. .+|..+.++..|..|+|+.|++. ..|..++.++ |+.|-
T Consensus 75 tdt~~aDlsrNR~~-elp~-~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPE-EACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred cchhhhhccccccc-cCch-HHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 33456677777774 5555 5666777888888888877 66777888888888888888887 5666666554 77888
Q ss_pred CCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccC
Q 003084 583 LSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSC 662 (850)
Q Consensus 583 Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 662 (850)
+++|+++..++ ..+. ++.|..||.+.
T Consensus 150 ~sNNkl~~lp~-~ig~-----------------------------------------------------~~tl~~ld~s~ 175 (722)
T KOG0532|consen 150 VSNNKLTSLPE-EIGL-----------------------------------------------------LPTLAHLDVSK 175 (722)
T ss_pred EecCccccCCc-cccc-----------------------------------------------------chhHHHhhhhh
Confidence 88888764332 2222 34789999999
Q ss_pred CccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCC
Q 003084 663 NKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKI 741 (850)
Q Consensus 663 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~ 741 (850)
|.+. .+|..++++.+|+.|++..|++. ..|+.+..| .|..||+|+|+++ .+|-.|.+|+.|++|.|.+|+|..++
T Consensus 176 nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 176 NEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred hhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCCh
Confidence 9998 67889999999999999999998 556666654 5889999999999 89999999999999999999998543
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.10 E-value=3.7e-12 Score=132.07 Aligned_cols=196 Identities=27% Similarity=0.406 Sum_probs=158.5
Q ss_pred CCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEE
Q 003084 478 RLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHL 557 (850)
Q Consensus 478 ~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 557 (850)
.+.--...|++.|++.........+..|+.+.+..|.+. .++. ...++..|+.|||+.|+++ ..|..+..|+ |+.|
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~-~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPE-AICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred cccchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecch-hhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 344556789999999854444444778999999999884 5666 7889999999999999998 6677676665 9999
Q ss_pred ECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhh
Q 003084 558 NLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFE 637 (850)
Q Consensus 558 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (850)
.+++|+++ .+|..++..+.|..||.+.|.+...++. +..
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsq-l~~--------------------------------------- 187 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQ-LGY--------------------------------------- 187 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhhhchHH-hhh---------------------------------------
Confidence 99999999 7788888999999999999998755432 222
Q ss_pred hccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccC
Q 003084 638 FTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 717 (850)
Q Consensus 638 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 717 (850)
+.+|+.|.++.|++. ..|+.+..| .|..||+|+|+++ .+|-.|..|+.|++|-|.+|+++ ..
T Consensus 188 --------------l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SP 249 (722)
T KOG0532|consen 188 --------------LTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SP 249 (722)
T ss_pred --------------HHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CC
Confidence 448999999999998 567778755 5999999999999 88999999999999999999998 66
Q ss_pred Chhhh---cCCCCCEEEccCCc
Q 003084 718 PRQLV---DLNTLAIFIVAYNN 736 (850)
Q Consensus 718 p~~l~---~l~~L~~L~l~~N~ 736 (850)
|..+. ...-.++|+..-+.
T Consensus 250 PAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 250 PAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hHHHHhccceeeeeeecchhcc
Confidence 66543 34556788887774
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.10 E-value=1.6e-11 Score=117.04 Aligned_cols=87 Identities=28% Similarity=0.276 Sum_probs=56.3
Q ss_pred ccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCC-hhhhcCCCCCEEE
Q 003084 653 SLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP-RQLVDLNTLAIFI 731 (850)
Q Consensus 653 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~ 731 (850)
++|+.||||+|.++.. ...-..+-+.+.|.|++|.|... .+++.+-+|..||+++|+|..... ..++++|-|+.+.
T Consensus 329 ~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 329 PQLQLLDLSGNLLAEC-VGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLR 405 (490)
T ss_pred ccceEeecccchhHhh-hhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHh
Confidence 3666677777766632 22223455677777777777633 466777777777888777764222 4567778888888
Q ss_pred ccCCcCcCCCC
Q 003084 732 VAYNNLSGKIP 742 (850)
Q Consensus 732 l~~N~l~~~~p 742 (850)
+.+|++.+.+.
T Consensus 406 L~~NPl~~~vd 416 (490)
T KOG1259|consen 406 LTGNPLAGSVD 416 (490)
T ss_pred hcCCCccccch
Confidence 88888875443
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.06 E-value=1.9e-10 Score=125.63 Aligned_cols=199 Identities=35% Similarity=0.489 Sum_probs=111.6
Q ss_pred EEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCc
Q 003084 460 HIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY 539 (850)
Q Consensus 460 ~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~ 539 (850)
.+....+.+... .......+.++.|++.+|.+....+...... ++|+.|++++|.
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~------------------------~nL~~L~l~~N~ 151 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPPLIGLLK------------------------SNLKELDLSDNK 151 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccccCccccccch------------------------hhcccccccccc
Confidence 456666655322 2223344566666666666653332222221 256666666666
Q ss_pred CCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccc
Q 003084 540 LNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSF 619 (850)
Q Consensus 540 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (850)
+. .+|..+..+++|+.|++++|++. .+|......+.|+.|++++|++..+++.. .
T Consensus 152 i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~-~---------------------- 206 (394)
T COG4886 152 IE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEI-E---------------------- 206 (394)
T ss_pred hh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccccCchhh-h----------------------
Confidence 65 33344566666666666666666 33433335566666666666665443221 0
Q ss_pred cccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCC
Q 003084 620 SISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSN 699 (850)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 699 (850)
.+..|++|++++|.+. ..+..+..++++..+.+.+|++. ..+..++.
T Consensus 207 -------------------------------~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~ 253 (394)
T COG4886 207 -------------------------------LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGN 253 (394)
T ss_pred -------------------------------hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhcc
Confidence 0124666666666433 34555666666666666666665 23556666
Q ss_pred CCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCC
Q 003084 700 LRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 743 (850)
Q Consensus 700 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~ 743 (850)
+++++.|++++|.++...+ +..+.+++.|++++|.+...+|.
T Consensus 254 l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 254 LSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence 6667777777777663333 66667777777777766655554
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.02 E-value=4.7e-10 Score=122.61 Aligned_cols=102 Identities=33% Similarity=0.487 Sum_probs=48.4
Q ss_pred EEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCC-CCcEEECcCCCCCCCCcccccCCCCCcEEECCCC
Q 003084 388 FLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCS-SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKN 466 (850)
Q Consensus 388 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 466 (850)
.++...+.+... ...+..++.++.|++.+|.++. ++....... +|+.|++++|.+. .+|..++.++.|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 455555554311 1223334555666666665552 233333332 5566666665555 33334455555555555555
Q ss_pred ccccCcchhccCCCCCCEEeccCCcCC
Q 003084 467 HLEGPIPVEFCRLDSLQILDISDNNIS 493 (850)
Q Consensus 467 ~l~~~~~~~~~~l~~L~~L~ls~n~l~ 493 (850)
++.. .+......+.|+.|++++|++.
T Consensus 174 ~l~~-l~~~~~~~~~L~~L~ls~N~i~ 199 (394)
T COG4886 174 DLSD-LPKLLSNLSNLNNLDLSGNKIS 199 (394)
T ss_pred hhhh-hhhhhhhhhhhhheeccCCccc
Confidence 5542 2222224445555555555554
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.00 E-value=5.8e-11 Score=113.37 Aligned_cols=186 Identities=22% Similarity=0.288 Sum_probs=117.4
Q ss_pred ccccCCCCCCCEEEcCCCCCcccchhhhhccCCCCcEEeCCCCcCCCcc---cC-------------------CcCCCCC
Q 003084 24 TQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVL---SG-------------------QGFPHFK 81 (850)
Q Consensus 24 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~~~~~L~~L~Ls~~~~~~~~---~~-------------------~~~~~l~ 81 (850)
+-.++-|++|+.+.+|.+.-.. +.++...-|.|+++......+.... |. .....++
T Consensus 207 ~f~l~~f~~l~~~~~s~~~~~~--i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq 284 (490)
T KOG1259|consen 207 SFNLNAFRNLKTLKFSALSTEN--IVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQ 284 (490)
T ss_pred ccchHHhhhhheeeeeccchhh--eeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHh
Confidence 4456678888888888874222 2222222477777777665443110 00 1234567
Q ss_pred cccEEecccCCcccccchhhHhhhcCCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCccccCCCC
Q 003084 82 SLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTS 161 (850)
Q Consensus 82 ~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 161 (850)
.|++||| +.|.++. +.++..- .|+++.|++|+|.|.. + +.+..+++|+.||||+|.++.. ..+=.++-+
T Consensus 285 ~LtelDL--S~N~I~~-iDESvKL-~Pkir~L~lS~N~i~~----v--~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGN 353 (490)
T KOG1259|consen 285 ELTELDL--SGNLITQ-IDESVKL-APKLRRLILSQNRIRT----V--QNLAELPQLQLLDLSGNLLAEC-VGWHLKLGN 353 (490)
T ss_pred hhhhccc--cccchhh-hhhhhhh-ccceeEEeccccceee----e--hhhhhcccceEeecccchhHhh-hhhHhhhcC
Confidence 7788888 5555432 2233333 6778888888887754 2 3466777888888888776632 333446677
Q ss_pred CCEEECCCCcCcCCCCcccccCCCCCCeEECcCCcCcCCCCcccccCCCCccEEEccCCccccc
Q 003084 162 LRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGE 225 (850)
Q Consensus 162 L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 225 (850)
.+.|.|++|.+. .+.. ++.+-+|..||+++|++........+++++-|+.+.+.+|.+...
T Consensus 354 IKtL~La~N~iE-~LSG--L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 354 IKTLKLAQNKIE-TLSG--LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred EeeeehhhhhHh-hhhh--hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 777888888775 4443 677777888888888777555556677777778777777776544
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.99 E-value=3e-11 Score=118.42 Aligned_cols=242 Identities=24% Similarity=0.275 Sum_probs=109.5
Q ss_pred CCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCC---ccccccC-------ccccCCCCCCEEECCCCcCcCCC
Q 003084 107 MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNN---DLRGSLP-------WCLANTTSLRILDVSFNQLTGSI 176 (850)
Q Consensus 107 l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n---~l~~~~~-------~~~~~l~~L~~L~Ls~n~i~~~i 176 (850)
...++++++|+|.+...+.......+.+.++|+..+++.- +....+| .++..+++|++||||.|-+...-
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 4556666666666554333333334555556666666542 1111222 23445567777777776653221
Q ss_pred Cc---ccccCCCCCCeEECcCCcCcCCC------------CcccccCCCCccEEEccCCccccccccccCCCCccceeEE
Q 003084 177 SS---SPLVHLTSIEELRLSNNHFRIPV------------SLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSL 241 (850)
Q Consensus 177 ~~---~~~~~l~~L~~L~L~~n~~~~~~------------~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L 241 (850)
+. .-+.++..|++|.|.+|.+.-.. .....+.-++|+.+..++|++.......
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~------------ 176 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATA------------ 176 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHH------------
Confidence 11 02345666777777777654110 0111233345555555555443221111
Q ss_pred EccCCCCCCcccCccccCCCCccEEEccCCcccccCch---hhhhcCCCCcEEEccCCcCcCcC----ccCcCCCCCccE
Q 003084 242 SLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPN---WLLENNTKLEFLYLVNDSLAGPF----RLPIHSHKRLRF 314 (850)
Q Consensus 242 ~ls~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~L~~~~~~~~~----~~~~~~~~~L~~ 314 (850)
+...++..+.|+.+.+..|.+...... .-+..|+.|++|++.+|.++... ...+..+++|+.
T Consensus 177 -----------~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 177 -----------LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred -----------HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 122233445555555555544332211 11344555555555555554321 223444555555
Q ss_pred EEccCCcCCcCCChhhh----hcCCCCcEEEccCCcCcc----cCcccccCCCCCCEEEccCCcC
Q 003084 315 LDVSNNNFQGHIPVEIG----DILPSLVYFNISMNALDG----SIPSSFGNVIFLQFLDLSNNKL 371 (850)
Q Consensus 315 L~Ls~n~l~~~~~~~~~----~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l 371 (850)
|++++|.+.......+. ...|+|+++.+.+|.++. .+..++...+.|+.|++++|.+
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 55555555433322222 223455555555555441 1112223344444444544444
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.97 E-value=2.6e-10 Score=105.41 Aligned_cols=107 Identities=34% Similarity=0.429 Sum_probs=31.7
Q ss_pred CCCCcEEEccCCCCCCCCCccCCcCCC-CCCCCCEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccc-cCC
Q 003084 107 MPSLKYLSLSGSTLGTNSSRILDQGLC-PLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPL-VHL 184 (850)
Q Consensus 107 l~~L~~L~ls~n~i~~~~~~i~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~-~~l 184 (850)
+.++++|+|++|.|.. |. .+. .+.+|+.|++++|.++.. +.+..+++|+.|++++|.|+ .++. .+ ..+
T Consensus 18 ~~~~~~L~L~~n~I~~----Ie--~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~-~l~~~l 87 (175)
T PF14580_consen 18 PVKLRELNLRGNQIST----IE--NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISE-GLDKNL 87 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CH-HHHHH-
T ss_pred cccccccccccccccc----cc--chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-cccc-chHHhC
Confidence 3445666666666643 32 333 355666666666666643 23555666666666666665 4543 23 346
Q ss_pred CCCCeEECcCCcCcCCCCcccccCCCCccEEEccCCccc
Q 003084 185 TSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEIN 223 (850)
Q Consensus 185 ~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 223 (850)
++|++|++++|.+........++.+++|+.|++.+|++.
T Consensus 88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 666666666666665444555666666666666666654
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.2e-10 Score=117.39 Aligned_cols=219 Identities=21% Similarity=0.227 Sum_probs=118.9
Q ss_pred cCCCCCCEEECCCCcCcCCCCc-ccccCCCCCCeEECcCCcCcCCCCc-ccccCCCCccEEEccCCccccccccccCCCC
Q 003084 157 ANTTSLRILDVSFNQLTGSISS-SPLVHLTSIEELRLSNNHFRIPVSL-EPLFNHSKLKIFDAKNNEINGEINESHSLTP 234 (850)
Q Consensus 157 ~~l~~L~~L~Ls~n~i~~~i~~-~~~~~l~~L~~L~L~~n~~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 234 (850)
.++.+|+...|.++.+. ..+. .....|++++.|||+.|-+..-.+. .....+++|+.|+++.|++........
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~---- 192 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT---- 192 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc----
Confidence 45677888888877764 3331 2466788888888888866532222 223457777777777777643221110
Q ss_pred ccceeEEEccCCCCCCcccCccccCCCCccEEEccCCcccccCchhhhhcCCCCcEEEccCCcCcCcCccCcCCCCCccE
Q 003084 235 KFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRF 314 (850)
Q Consensus 235 ~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~ 314 (850)
-..++.++.|.++.|.++-.--.+....+|+|+.|++..|........+...++.|+.
T Consensus 193 ----------------------~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~ 250 (505)
T KOG3207|consen 193 ----------------------TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQE 250 (505)
T ss_pred ----------------------hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhh
Confidence 0123456666777776664444455566777777777777544444444555666777
Q ss_pred EEccCCcCCcCCChhhhhcCCCCcEEEccCCcCccc-CcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccC
Q 003084 315 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGS-IPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 393 (850)
Q Consensus 315 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~ 393 (850)
|||++|++-..-.......+|.|+.|+++.+.+... .|+. ..+ .....+++|++|++..
T Consensus 251 LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~-------~s~-------------~kt~~f~kL~~L~i~~ 310 (505)
T KOG3207|consen 251 LDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDV-------ESL-------------DKTHTFPKLEYLNISE 310 (505)
T ss_pred ccccCCcccccccccccccccchhhhhccccCcchhcCCCc-------cch-------------hhhcccccceeeeccc
Confidence 777777664211112223356666666666655421 1111 000 0011245566666666
Q ss_pred CccCcc-ccccccCCCCCCeeeccCCcCcc
Q 003084 394 NSLKGH-IFSRIFSLRNLRWLLLEGNHFVG 422 (850)
Q Consensus 394 n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~ 422 (850)
|++... .-..+..+++|+.|.+..|.+..
T Consensus 311 N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 311 NNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred Cccccccccchhhccchhhhhhcccccccc
Confidence 665321 11234455666777776776653
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.93 E-value=1.4e-10 Score=113.83 Aligned_cols=241 Identities=21% Similarity=0.274 Sum_probs=169.3
Q ss_pred CCCCCCCEEeCCCCcCCcc----ccCccccCCCCCCCEEEcCCCC---Ccccchh-------hhhccCCCCcEEeCCCCc
Q 003084 2 GSFPSLNTLHLESNNFTAT----LTTTQELHNFTNLEYLTLDDSS---LHISLLQ-------SIGSIFPSLKNLSMSGCE 67 (850)
Q Consensus 2 ~~l~~L~~L~Ls~~~~~~~----~~~~~~~~~l~~L~~L~Ls~n~---i~~~~~~-------~l~~~~~~L~~L~Ls~~~ 67 (850)
..+..+++++||+|.|... + ...+++-+.|+..++|+-- .....++ ++.. +++|++|+||+|-
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i--~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~-~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAI--AKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLG-CPKLQKLDLSDNA 103 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHH--HHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhc-CCceeEeeccccc
Confidence 3567899999999988643 3 5667888899999998852 2222232 3445 7799999999998
Q ss_pred CCCcccC---CcCCCCCcccEEecccCCcccccchhhHhh------------hcCCCCcEEEccCCCCCCCCCccCCcCC
Q 003084 68 VNGVLSG---QGFPHFKSLEHLDMRFARIALNTSFLQIIG------------ESMPSLKYLSLSGSTLGTNSSRILDQGL 132 (850)
Q Consensus 68 ~~~~~~~---~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~------------~~l~~L~~L~ls~n~i~~~~~~i~~~~l 132 (850)
+....+. ..+..+..|++|+| .+|.+....-..++ .+-++||++...+|++...+....+..|
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L--~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~ 181 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYL--NNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAF 181 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhh--hcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHH
Confidence 7654432 13467899999999 77776533222211 2368899999999998776655555678
Q ss_pred CCCCCCCEEEccCCcccc----ccCccccCCCCCCEEECCCCcCcCC----CCcccccCCCCCCeEECcCCcCcCCCCcc
Q 003084 133 CPLAHLQELYIDNNDLRG----SLPWCLANTTSLRILDVSFNQLTGS----ISSSPLVHLTSIEELRLSNNHFRIPVSLE 204 (850)
Q Consensus 133 ~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~i~~~----i~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 204 (850)
...+.|+.+.++.|.|.. .+..+|..+++|+.||+..|.++.. +.. .+..+++|++|++++|.+.......
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak-aL~s~~~L~El~l~dcll~~~Ga~a 260 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK-ALSSWPHLRELNLGDCLLENEGAIA 260 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH-HhcccchheeecccccccccccHHH
Confidence 888999999999998753 2345678999999999999988621 233 5677889999999999887322211
Q ss_pred ---cc-cCCCCccEEEccCCccccccccc--cCCCCccceeEEEccCCCC
Q 003084 205 ---PL-FNHSKLKIFDAKNNEINGEINES--HSLTPKFQLKSLSLSSNYG 248 (850)
Q Consensus 205 ---~l-~~l~~L~~L~l~~n~~~~~~~~~--~~~~~~~~L~~L~ls~~~~ 248 (850)
.+ ...++|+.+.+.+|.|+...... ......+.|++|++++|..
T Consensus 261 ~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 11 23688999999999887543322 1222355899999966643
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.92 E-value=5.1e-10 Score=103.55 Aligned_cols=105 Identities=25% Similarity=0.291 Sum_probs=44.9
Q ss_pred CCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCC
Q 003084 107 MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTS 186 (850)
Q Consensus 107 l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~ 186 (850)
+.+|+.|++++|.|+. +. .+..+++|++|++++|+++...+.....+++|++|++++|.|.+--.-..+..+++
T Consensus 41 l~~L~~L~Ls~N~I~~----l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~ 114 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITK----LE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPK 114 (175)
T ss_dssp -TT--EEE-TTS--S------T--T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT
T ss_pred hcCCCEEECCCCCCcc----cc--CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCC
Confidence 5677788888888765 43 56778888888888888875433222467888888888888863222235678888
Q ss_pred CCeEECcCCcCcCCC--CcccccCCCCccEEEc
Q 003084 187 IEELRLSNNHFRIPV--SLEPLFNHSKLKIFDA 217 (850)
Q Consensus 187 L~~L~L~~n~~~~~~--~~~~l~~l~~L~~L~l 217 (850)
|++|++.+|++.... ....+..+|+|+.||-
T Consensus 115 L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 115 LRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp --EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred cceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 888888888876321 1223456777777764
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.86 E-value=1.5e-09 Score=82.35 Aligned_cols=60 Identities=50% Similarity=0.630 Sum_probs=36.5
Q ss_pred cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcC
Q 003084 654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL 713 (850)
Q Consensus 654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 713 (850)
+|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|+.|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 456666666666655555566666666666666666655555666666666666666653
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.84 E-value=3.2e-10 Score=123.74 Aligned_cols=249 Identities=28% Similarity=0.276 Sum_probs=142.6
Q ss_pred CCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEE
Q 003084 406 SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQIL 485 (850)
Q Consensus 406 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 485 (850)
.+..++.+.+..|.+.. ....+..+++|+.|++.+|.+..+ ...+..+++|++|++++|.|+...+ +..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccc--hhhccchhhh
Confidence 34455555555555553 122244555666666666665522 1124445555555555555543321 2333444455
Q ss_pred eccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcC-ccccCCCCCCEEECcCCcC
Q 003084 486 DISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP-DWIDGLSQLSHLNLAHNNL 564 (850)
Q Consensus 486 ~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l 564 (850)
++++|.+.. +. .+..++.|+.+++++|.+..+.+ . ...+.+++.+++.+|.+
T Consensus 146 ~l~~N~i~~------------------------~~--~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 146 NLSGNLISD------------------------IS--GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred eeccCcchh------------------------cc--CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence 555554431 11 34446677777777777765433 2 45667777777777776
Q ss_pred ccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccch
Q 003084 565 EGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIA 644 (850)
Q Consensus 565 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (850)
... ..+..+..+..+++..|.++...+.....
T Consensus 199 ~~i--~~~~~~~~l~~~~l~~n~i~~~~~l~~~~---------------------------------------------- 230 (414)
T KOG0531|consen 199 REI--EGLDLLKKLVLLSLLDNKISKLEGLNELV---------------------------------------------- 230 (414)
T ss_pred hcc--cchHHHHHHHHhhcccccceeccCcccch----------------------------------------------
Confidence 532 22333444445566666665332211000
Q ss_pred hcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCccc---CChh-
Q 003084 645 YAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK---IPRQ- 720 (850)
Q Consensus 645 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~p~~- 720 (850)
...|+.+++++|++. ..+..+..++.+..|++++|++... ..+.....+..+....|.+... ....
T Consensus 231 -------~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (414)
T KOG0531|consen 231 -------MLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYI 300 (414)
T ss_pred -------hHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccc
Confidence 003788888888887 4446677788888999999888744 3455667777888888887632 2221
Q ss_pred hhcCCCCCEEEccCCcCcCCCCC
Q 003084 721 LVDLNTLAIFIVAYNNLSGKIPE 743 (850)
Q Consensus 721 l~~l~~L~~L~l~~N~l~~~~p~ 743 (850)
....+.+....+.+|++....+.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~ 323 (414)
T KOG0531|consen 301 TSAAPTLVTLTLELNPIRKISSL 323 (414)
T ss_pred ccccccccccccccCcccccccc
Confidence 45667888888888888765553
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.84 E-value=1.9e-09 Score=81.76 Aligned_cols=61 Identities=39% Similarity=0.572 Sum_probs=57.8
Q ss_pred CCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcC
Q 003084 677 TRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNL 737 (850)
Q Consensus 677 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l 737 (850)
++|++|++++|+++.+.+..|..+++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5799999999999988889999999999999999999988889999999999999999985
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.65 E-value=5.6e-09 Score=114.06 Aligned_cols=197 Identities=26% Similarity=0.311 Sum_probs=106.3
Q ss_pred CCCCCCCEEeCCCCcCCccccCccccCCCCCCCEEEcCCCCCcccchhhhhccCCCCcEEeCCCCcCCCcccCCcCCCCC
Q 003084 2 GSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFK 81 (850)
Q Consensus 2 ~~l~~L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~ 81 (850)
+.+++|++|++.+|.|+.. ...+..+++|++|++++|.|... ..+.. ++.|+.|++++|.+... . .+..++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i---~~~l~~~~~L~~L~ls~N~I~~i--~~l~~-l~~L~~L~l~~N~i~~~-~--~~~~l~ 162 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKI---ENLLSSLVNLQVLDLSFNKITKL--EGLST-LTLLKELNLSGNLISDI-S--GLESLK 162 (414)
T ss_pred ccccceeeeeccccchhhc---ccchhhhhcchheeccccccccc--cchhh-ccchhhheeccCcchhc-c--CCccch
Confidence 3456666666666666654 12256666666666666666544 34455 55566666666666522 2 355566
Q ss_pred cccEEecccCCcccccchhhHhhhcCCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCccccCCCC
Q 003084 82 SLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTS 161 (850)
Q Consensus 82 ~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 161 (850)
.|+.+++ +++++...-...... +.+++.+.+.+|.+.. + ..+..+..+..+++..|.+....+ +..+..
T Consensus 163 ~L~~l~l--~~n~i~~ie~~~~~~-~~~l~~l~l~~n~i~~----i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~ 231 (414)
T KOG0531|consen 163 SLKLLDL--SYNRIVDIENDELSE-LISLEELDLGGNSIRE----I--EGLDLLKKLVLLSLLDNKISKLEG--LNELVM 231 (414)
T ss_pred hhhcccC--Ccchhhhhhhhhhhh-ccchHHHhccCCchhc----c--cchHHHHHHHHhhcccccceeccC--cccchh
Confidence 6666666 555544333310223 5666666666666543 1 133344444555666666553322 222222
Q ss_pred --CCEEECCCCcCcCCCCcccccCCCCCCeEECcCCcCcCCCCcccccCCCCccEEEccCCccc
Q 003084 162 --LRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEIN 223 (850)
Q Consensus 162 --L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 223 (850)
|+.+++++|.+. .++. .+..+.++..+++.+|.+... ..+.....+..+....+.+.
T Consensus 232 ~~L~~l~l~~n~i~-~~~~-~~~~~~~l~~l~~~~n~~~~~---~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 232 LHLRELYLSGNRIS-RSPE-GLENLKNLPVLDLSSNRISNL---EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred HHHHHHhcccCccc-cccc-cccccccccccchhhcccccc---ccccccchHHHhccCcchhc
Confidence 667777777765 4432 466666777777777665522 22333444444444444443
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.63 E-value=2.5e-08 Score=116.12 Aligned_cols=57 Identities=26% Similarity=0.388 Sum_probs=37.4
Q ss_pred hccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCcc-CcccCCCCCCCCEEEC
Q 003084 652 LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGT-IPLTFSNLRHIESLDL 708 (850)
Q Consensus 652 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L 708 (850)
.++|+.|.+..+...+.+......+..++.+-+..+.+.+. .-...+.++++..+.+
T Consensus 769 ~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l 826 (889)
T KOG4658|consen 769 APHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPL 826 (889)
T ss_pred cCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEeccc
Confidence 56899999998877666666666677777777777777655 2344445555544443
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=7.5e-10 Score=105.99 Aligned_cols=183 Identities=19% Similarity=0.158 Sum_probs=90.1
Q ss_pred CCCEEeCCCCcCCccccCccccCCCCCCCEEEcCCCCCcccchhhhhccCCCCcEEeCCCCc-CCCcccCCcCCCCCccc
Q 003084 6 SLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCE-VNGVLSGQGFPHFKSLE 84 (850)
Q Consensus 6 ~L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~~~~~L~~L~Ls~~~-~~~~~~~~~~~~l~~L~ 84 (850)
.|++||||+..|+... .-..++.|++|+.|.|.++++++.....+.+ -.+|+.|+|+.|. ++.....-.+..|+.|.
T Consensus 186 Rlq~lDLS~s~it~st-l~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVST-LHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeHHH-HHHHHHHHHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHh
Confidence 3667777766665321 0234566777777777777776665556666 6777777777664 22111111345666666
Q ss_pred EEecccCCcccccc-hhhHhhhcCCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCc-cccccCccccCCCCC
Q 003084 85 HLDMRFARIALNTS-FLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNND-LRGSLPWCLANTTSL 162 (850)
Q Consensus 85 ~L~L~~~~~~~~~~-~~~~l~~~l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L 162 (850)
.|++ +-|..... ....+..--++|+.|+++|+.-.-....+. .-...+++|..|||+.|. ++......|.+++.|
T Consensus 264 ~LNl--sWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~-tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L 340 (419)
T KOG2120|consen 264 ELNL--SWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLS-TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL 340 (419)
T ss_pred hcCc--hHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHH-HHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence 6666 44432211 111111112356666666653111000111 122345666666666553 232233345556666
Q ss_pred CEEECCCCcCcCCCCcc--cccCCCCCCeEECcCC
Q 003084 163 RILDVSFNQLTGSISSS--PLVHLTSIEELRLSNN 195 (850)
Q Consensus 163 ~~L~Ls~n~i~~~i~~~--~~~~l~~L~~L~L~~n 195 (850)
++|.++.|.. -+|.. .+...|.|.+||+.++
T Consensus 341 ~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 341 QHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 6666666552 12221 1234455555555444
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.59 E-value=6e-08 Score=113.04 Aligned_cols=200 Identities=23% Similarity=0.290 Sum_probs=112.7
Q ss_pred CCCcEEEccCCcCcCcCccCcCCCCCccEEEccCCc--CCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCE
Q 003084 286 TKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNN--FQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQF 363 (850)
Q Consensus 286 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 363 (850)
...+...+-++.+..... -..+++|++|-+..|. +. .++..+|..+|.|++|++++|.--+..|..++.+-+|++
T Consensus 523 ~~~rr~s~~~~~~~~~~~--~~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAG--SSENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred hheeEEEEeccchhhccC--CCCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 445555555555433211 1234567777777775 33 667777777778888888877665677777777788888
Q ss_pred EEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCc--ccCCcCCCCCCCCcEEECcC
Q 003084 364 LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFV--GEIPQSLSKCSSLKGLYLNN 441 (850)
Q Consensus 364 L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~ 441 (850)
|++++..+. .+|..+.. +..|.+|++..+.-....+.....+++|++|.+...... ...-..+..+.+|+.+....
T Consensus 600 L~L~~t~I~-~LP~~l~~-Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSGLGN-LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred ccccCCCcc-ccchHHHH-HHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 888887777 77777654 777777877777655455555666777777777655421 11112233444444444433
Q ss_pred CCCCCCCcccccCCCCCc----EEECCCCccccCcchhccCCCCCCEEeccCCcCC
Q 003084 442 NNLSGKIPRWLGNLKGLQ----HIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS 493 (850)
Q Consensus 442 n~l~~~~~~~~~~l~~L~----~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~ 493 (850)
... ..-..+..++.|. .+.+.++... ..+..+..+.+|+.|.+.++.+.
T Consensus 678 ~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 678 SSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred chh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCc
Confidence 222 0111122222222 2222222211 23334556666777777766664
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.47 E-value=6.5e-09 Score=111.33 Aligned_cols=128 Identities=24% Similarity=0.314 Sum_probs=94.3
Q ss_pred hhhhhhccccchhcc-hhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCC
Q 003084 633 LEIFEFTTKNIAYAY-QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 711 (850)
Q Consensus 633 ~~~~~~~~~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 711 (850)
+...++.++.+.... ..+.++.++.|||++|+++.. +.+..++.|++|||+.|.+....--....+. |..|.+++|
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN 242 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence 344445555444332 235678999999999999855 3789999999999999999854333444455 999999999
Q ss_pred cCcccCChhhhcCCCCCEEEccCCcCcCCCCC-CccccCCCCccccCCCCCCCCC
Q 003084 712 KLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE-WTAQFATFNKSSYDGNPFLCGL 765 (850)
Q Consensus 712 ~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~~~~~~~~~~n~~~c~~ 765 (850)
.++.. .++.++.+|+-||+++|-|++.--- ....+..+..+.+.|||..|.+
T Consensus 243 ~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 243 ALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred HHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 98742 4678899999999999988764322 1234566777889999988865
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=8.3e-09 Score=98.97 Aligned_cols=182 Identities=18% Similarity=0.152 Sum_probs=109.9
Q ss_pred CCCcEEeCCCCcCCCcccCCcCCCCCcccEEecccCCcccccchhhHhhhcCCCCcEEEccCCC-CCCCCCccCCcCCCC
Q 003084 56 PSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGST-LGTNSSRILDQGLCP 134 (850)
Q Consensus 56 ~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~ls~n~-i~~~~~~i~~~~l~~ 134 (850)
++|+++|||...|+..-....+..|.+|+.|.+ .++++++.+...+++ -.+|+.|+++.+. ++..+ ..-.+.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSl--Eg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~---~~ll~~s 258 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSL--EGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENA---LQLLLSS 258 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccc--cccccCcHHHHHHhc-cccceeeccccccccchhH---HHHHHHh
Confidence 357888888777664333334677778888877 777777777777777 7778888887764 33211 1124567
Q ss_pred CCCCCEEEccCCccccccCcc-ccC-CCCCCEEECCCCcC---cCCCCcccccCCCCCCeEECcCCcCcCCCCcccccCC
Q 003084 135 LAHLQELYIDNNDLRGSLPWC-LAN-TTSLRILDVSFNQL---TGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNH 209 (850)
Q Consensus 135 l~~L~~L~L~~n~l~~~~~~~-~~~-l~~L~~L~Ls~n~i---~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l 209 (850)
|+.|+.|++++|.+....-.. +.+ -++|+.|+++++.- ...+.. -...+++|.+|||++|......-...+.++
T Consensus 259 cs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~t-L~~rcp~l~~LDLSD~v~l~~~~~~~~~kf 337 (419)
T KOG2120|consen 259 CSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFKF 337 (419)
T ss_pred hhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHH-HHHhCCceeeeccccccccCchHHHHHHhc
Confidence 778888888887665332111 111 15677777776531 112222 235677888888877654433334456677
Q ss_pred CCccEEEccCCccccccccccCCCCccceeEEEccC
Q 003084 210 SKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSS 245 (850)
Q Consensus 210 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ls~ 245 (850)
+.|+++.++.|-.. .+.....+...+.|.+|++-+
T Consensus 338 ~~L~~lSlsRCY~i-~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 338 NYLQHLSLSRCYDI-IPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred chheeeehhhhcCC-ChHHeeeeccCcceEEEEecc
Confidence 78888888777532 122223334445788888733
No 46
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.44 E-value=6.3e-09 Score=104.73 Aligned_cols=305 Identities=17% Similarity=0.090 Sum_probs=151.6
Q ss_pred CCCEEEcCCCC-CcccchhhhhccCCCCcEEeCCCCcCCCccc-CCcCCCCCcccEEecccCCc-ccccchhhHhhhcCC
Q 003084 32 NLEYLTLDDSS-LHISLLQSIGSIFPSLKNLSMSGCEVNGVLS-GQGFPHFKSLEHLDMRFARI-ALNTSFLQIIGESMP 108 (850)
Q Consensus 32 ~L~~L~Ls~n~-i~~~~~~~l~~~~~~L~~L~Ls~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~-~~~~~~~~~l~~~l~ 108 (850)
-|+.|.+.++. +.+.....+...+|++++|++.+|....... ...-..+++|++|++ ..| .+++.....++++++
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L--~~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNL--HSCSSITDVSLKYLAEGCR 216 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhh--cccchhHHHHHHHHHHhhh
Confidence 46777777763 2333223444447777777777775221111 111245677777777 553 355555565666677
Q ss_pred CCcEEEccCCC-CCCCCCccCCcCCCCCCCCCEEEccCCccccc--cCccccCCCCCCEEECCCCc-CcCCCCc-ccccC
Q 003084 109 SLKYLSLSGST-LGTNSSRILDQGLCPLAHLQELYIDNNDLRGS--LPWCLANTTSLRILDVSFNQ-LTGSISS-SPLVH 183 (850)
Q Consensus 109 ~L~~L~ls~n~-i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~-i~~~i~~-~~~~~ 183 (850)
+|++|+++++. |++++ +. ..+.+++.++.+.+.+|.-... +...=..+..+..+++..+. ++ .... ..-..
T Consensus 217 kL~~lNlSwc~qi~~~g--v~-~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lT-D~~~~~i~~~ 292 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNG--VQ-ALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLT-DEDLWLIACG 292 (483)
T ss_pred hHHHhhhccCchhhcCc--ch-HHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcccc-chHHHHHhhh
Confidence 77777777764 33311 11 1344555666666665421110 00011233444455544442 22 1110 01124
Q ss_pred CCCCCeEECcCCcCcCCCCcccc-cCCCCccEEEccCCccccccccccCCCCccceeEEEccCCCCC-CcccCccccCCC
Q 003084 184 LTSIEELRLSNNHFRIPVSLEPL-FNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGD-SVTFPKFLYHQH 261 (850)
Q Consensus 184 l~~L~~L~L~~n~~~~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~-~~~~~~~l~~~~ 261 (850)
+.+|++|+.+++.-.+......+ .++.+|+.+.+.+++.-.......-...+++|+.+++...... .+++...-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 55666666666544332222222 2456666666666653222221222233446666666333222 222344445677
Q ss_pred CccEEEccCCcccccCchhh----hhcCCCCcEEEccCCcCcCc-CccCcCCCCCccEEEccCCcCCcCCC-hhhhhcCC
Q 003084 262 ELKEAELSHIKMIGEFPNWL----LENNTKLEFLYLVNDSLAGP-FRLPIHSHKRLRFLDVSNNNFQGHIP-VEIGDILP 335 (850)
Q Consensus 262 ~L~~L~l~~~~~~~~~~~~~----~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~~l~ 335 (850)
.|+++.++.+.......... -.....++.+.++++..... .-..+..+++|+.+++-.++-...-+ ..+...+|
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp 452 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLP 452 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCc
Confidence 88888887665443221111 13456778888888765432 22345678888888887775321222 22334466
Q ss_pred CCcEEEc
Q 003084 336 SLVYFNI 342 (850)
Q Consensus 336 ~L~~L~L 342 (850)
++++..+
T Consensus 453 ~i~v~a~ 459 (483)
T KOG4341|consen 453 NIKVHAY 459 (483)
T ss_pred cceehhh
Confidence 6665543
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.38 E-value=1.2e-08 Score=102.68 Aligned_cols=307 Identities=16% Similarity=0.067 Sum_probs=124.5
Q ss_pred CCEEeCCCCcCCccccCccccCCCCCCCEEEcCCC-CCcccchhhhhccCCCCcEEeCCCCc-CCCcccCCcCCCCCccc
Q 003084 7 LNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDS-SLHISLLQSIGSIFPSLKNLSMSGCE-VNGVLSGQGFPHFKSLE 84 (850)
Q Consensus 7 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~l~~~~~~L~~L~Ls~~~-~~~~~~~~~~~~l~~L~ 84 (850)
|+.|.+.|+.=.+.-.....-++++++++|++.++ .+++.....+...+++|++|++..|. ++..........+++|+
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~ 219 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK 219 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence 55555655432111111223345666666666665 44444444555556666666666643 22111111234556666
Q ss_pred EEecccCCc-ccccchhhHhhhcCCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCcc-ccccC-ccccCCCC
Q 003084 85 HLDMRFARI-ALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDL-RGSLP-WCLANTTS 161 (850)
Q Consensus 85 ~L~L~~~~~-~~~~~~~~~l~~~l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l-~~~~~-~~~~~l~~ 161 (850)
+|++ +.| ++.+.....+..+++.++.+.+.||.=.+. +.....-+.+..+.++++.+|.. ++... ..-.++.+
T Consensus 220 ~lNl--Swc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~l--e~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~ 295 (483)
T KOG4341|consen 220 YLNL--SWCPQISGNGVQALQRGCKELEKLSLKGCLELEL--EALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA 295 (483)
T ss_pred Hhhh--ccCchhhcCcchHHhccchhhhhhhhcccccccH--HHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence 6666 333 233333333333355555555444421110 00000112233344444444421 11110 01123445
Q ss_pred CCEEECCCCcCcCCCCcccc-cCCCCCCeEECcCCcCcCCCCccccc-CCCCccEEEccCCccccccccccCCCCcccee
Q 003084 162 LRILDVSFNQLTGSISSSPL-VHLTSIEELRLSNNHFRIPVSLEPLF-NHSKLKIFDAKNNEINGEINESHSLTPKFQLK 239 (850)
Q Consensus 162 L~~L~Ls~n~i~~~i~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~ 239 (850)
|+.|+.+++.-.+..+-.++ .+..+|++|.++.++-.+...+..++ +++.|+.+++..+..............++.|+
T Consensus 296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr 375 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR 375 (483)
T ss_pred hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence 55555544432111111011 23445555555544422222222222 34455555554443332221111122333455
Q ss_pred EEEccCCCCCCcc----cCccccCCCCccEEEccCCcccccCchhhhhcCCCCcEEEccCCcCcCcCc--cCcCCCCCcc
Q 003084 240 SLSLSSNYGDSVT----FPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFR--LPIHSHKRLR 313 (850)
Q Consensus 240 ~L~ls~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~~~L~ 313 (850)
++.++.+...+.. +...-.....++.+.++++..+....-.....++.|+.+++-++.-....+ ..-..+|+++
T Consensus 376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~ 455 (483)
T KOG4341|consen 376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIK 455 (483)
T ss_pred cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccce
Confidence 5555433222211 011112344566666666665544444444566677777766654332111 1123455555
Q ss_pred EEEc
Q 003084 314 FLDV 317 (850)
Q Consensus 314 ~L~L 317 (850)
+..+
T Consensus 456 v~a~ 459 (483)
T KOG4341|consen 456 VHAY 459 (483)
T ss_pred ehhh
Confidence 5443
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.35 E-value=1e-08 Score=109.92 Aligned_cols=107 Identities=28% Similarity=0.375 Sum_probs=70.4
Q ss_pred CCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCC
Q 003084 107 MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTS 186 (850)
Q Consensus 107 l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~ 186 (850)
++.|+.|||++|+++. .+.+..|++|++|||++|.+....--...+++ |+.|.+++|.++ ++-. +.+|.+
T Consensus 186 l~ale~LnLshNk~~~------v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~-tL~g--ie~Lks 255 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTK------VDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALT-TLRG--IENLKS 255 (1096)
T ss_pred HHHhhhhccchhhhhh------hHHHHhcccccccccccchhccccccchhhhh-heeeeecccHHH-hhhh--HHhhhh
Confidence 5667777777777754 23566677777777777776643322333444 777777777776 4443 677777
Q ss_pred CCeEECcCCcCcCCCCcccccCCCCccEEEccCCccc
Q 003084 187 IEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEIN 223 (850)
Q Consensus 187 L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 223 (850)
|+.||+++|-+.+......+..+..|+.|.+.+|.+-
T Consensus 256 L~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 7777777777766555566666677777777777653
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=4.6e-07 Score=87.24 Aligned_cols=188 Identities=15% Similarity=0.095 Sum_probs=82.8
Q ss_pred CCCCCCEEEcCCCCCccc--chhhhhccCCCCcEEeCCCCcCCCcccCCcC-CCCCcccEEecccCCcccccchhhHhhh
Q 003084 29 NFTNLEYLTLDDSSLHIS--LLQSIGSIFPSLKNLSMSGCEVNGVLSGQGF-PHFKSLEHLDMRFARIALNTSFLQIIGE 105 (850)
Q Consensus 29 ~l~~L~~L~Ls~n~i~~~--~~~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~~l~~ 105 (850)
.+++++.+||.+|.|++= ...-+.+ +|.|++|+|+.|.+...+. .+ ...++|++|-| ++..+.-.-..++..
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~-lP~l~~LNls~N~L~s~I~--~lp~p~~nl~~lVL--NgT~L~w~~~~s~l~ 143 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQ-LPALTTLNLSCNSLSSDIK--SLPLPLKNLRVLVL--NGTGLSWTQSTSSLD 143 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhc-CccceEeeccCCcCCCccc--cCcccccceEEEEE--cCCCCChhhhhhhhh
Confidence 455666666666665531 1112233 6666666666666554333 22 34556666666 444333222222323
Q ss_pred cCCCCcEEEccCCCCCCCCCccCCcCCCCC-CCCCEEEccCCcccc--ccCccccCCCCCCEEECCCCcCcCCCCccccc
Q 003084 106 SMPSLKYLSLSGSTLGTNSSRILDQGLCPL-AHLQELYIDNNDLRG--SLPWCLANTTSLRILDVSFNQLTGSISSSPLV 182 (850)
Q Consensus 106 ~l~~L~~L~ls~n~i~~~~~~i~~~~l~~l-~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~ 182 (850)
.+|.++.|.+|.|.+... .+........ +.+++|.+-.|.... ..-..-.-.+++..+-+..|.++..-....+.
T Consensus 144 ~lP~vtelHmS~N~~rq~--n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se 221 (418)
T KOG2982|consen 144 DLPKVTELHMSDNSLRQL--NLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSE 221 (418)
T ss_pred cchhhhhhhhccchhhhh--ccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCC
Confidence 355555665555533210 0111111111 133344443332110 00000011244444555555444222223444
Q ss_pred CCCCCCeEECcCCcCcCCCCcccccCCCCccEEEccCCccc
Q 003084 183 HLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEIN 223 (850)
Q Consensus 183 ~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 223 (850)
.++.+-.|+|+.|++..-.....+..+++|..+.++++.+.
T Consensus 222 ~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 222 PFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred CCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 55555555666665554444445555555555555555543
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.17 E-value=8.7e-08 Score=81.23 Aligned_cols=82 Identities=26% Similarity=0.403 Sum_probs=47.7
Q ss_pred cCCeEEccCCccccCCCccccC-CCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEc
Q 003084 654 LLAGLDLSCNKLVGHIPPQIGN-LTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIV 732 (850)
Q Consensus 654 ~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 732 (850)
.|+..+|++|.+. ..|+.|.. .+..+.|+|++|.|+ .+|..+..++.|+.|+++.|++. ..|+.+..+.+|.+|+.
T Consensus 54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 3555566666665 33444432 345666666666666 44555666666666666666665 45555555666666666
Q ss_pred cCCcCc
Q 003084 733 AYNNLS 738 (850)
Q Consensus 733 ~~N~l~ 738 (850)
.+|.+.
T Consensus 131 ~~na~~ 136 (177)
T KOG4579|consen 131 PENARA 136 (177)
T ss_pred CCCccc
Confidence 666554
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.12 E-value=1e-06 Score=100.28 Aligned_cols=110 Identities=17% Similarity=0.347 Sum_probs=73.3
Q ss_pred CCCCEEeCCCCcCCc-cccCccccC-CCCCCCEEEcCCCCCcccchhhhhccCCCCcEEeCCCCcCCCcccCCcCCCCCc
Q 003084 5 PSLNTLHLESNNFTA-TLTTTQELH-NFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKS 82 (850)
Q Consensus 5 ~~L~~L~Ls~~~~~~-~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~ 82 (850)
.+|++||++|...-. .. +..++ .||.|++|.+++-.+.......+..-+|+|+.||+|+++++.. ..++++++
T Consensus 122 ~nL~~LdI~G~~~~s~~W--~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGW--PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKN 196 (699)
T ss_pred HhhhhcCccccchhhccH--HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhcccc
Confidence 467888888764322 22 22333 5788888888887766554555554488888888888887744 25788888
Q ss_pred ccEEecccCCccccc-chhhHhhhcCCCCcEEEccCCCCCC
Q 003084 83 LEHLDMRFARIALNT-SFLQIIGESMPSLKYLSLSGSTLGT 122 (850)
Q Consensus 83 L~~L~L~~~~~~~~~-~~~~~l~~~l~~L~~L~ls~n~i~~ 122 (850)
|++|.+ .+-.+.. .....+.. |++|++||+|......
T Consensus 197 Lq~L~m--rnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~ 234 (699)
T KOG3665|consen 197 LQVLSM--RNLEFESYQDLIDLFN-LKKLRVLDISRDKNND 234 (699)
T ss_pred HHHHhc--cCCCCCchhhHHHHhc-ccCCCeeecccccccc
Confidence 888888 5555543 33445566 8888888888766543
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=8.7e-07 Score=85.42 Aligned_cols=110 Identities=18% Similarity=0.133 Sum_probs=57.6
Q ss_pred CCCCCEEECCCCcCcCCCCcccc-cCCCCCCeEECcCCcCcCCC-CcccccCCCCccEEEccCCccccccccccCCCCcc
Q 003084 159 TTSLRILDVSFNQLTGSISSSPL-VHLTSIEELRLSNNHFRIPV-SLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKF 236 (850)
Q Consensus 159 l~~L~~L~Ls~n~i~~~i~~~~~-~~l~~L~~L~L~~n~~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 236 (850)
...++.|.+.++.|...-....| ..++.++.+||.+|.++.-. ..+.+.+++.|+.|+++.|.+........ .|..
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp--~p~~ 121 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--LPLK 121 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--cccc
Confidence 34455566666665421111122 35567888888888876311 11235678888888888887765443322 3444
Q ss_pred ceeEEEccCCCCCC-cccCccccCCCCccEEEccCC
Q 003084 237 QLKSLSLSSNYGDS-VTFPKFLYHQHELKEAELSHI 271 (850)
Q Consensus 237 ~L~~L~ls~~~~~~-~~~~~~l~~~~~L~~L~l~~~ 271 (850)
+|++|-+ .+.... ......+..++.+++++++.|
T Consensus 122 nl~~lVL-NgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 122 NLRVLVL-NGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred ceEEEEE-cCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 6666666 222221 112233334444455544444
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.02 E-value=7.8e-07 Score=84.55 Aligned_cols=218 Identities=20% Similarity=0.198 Sum_probs=106.6
Q ss_pred CCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccc---c-------ccCccccCCCCCCEEECCCCcCcCCC
Q 003084 107 MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLR---G-------SLPWCLANTTSLRILDVSFNQLTGSI 176 (850)
Q Consensus 107 l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~---~-------~~~~~~~~l~~L~~L~Ls~n~i~~~i 176 (850)
+..++.++||||.|...+++.....+.+-.+|+..+++.-... . .+..++-+||+|+..+||.|-+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 5566666666666655333333344555566666666553211 1 12234556677777777777664333
Q ss_pred Cc---ccccCCCCCCeEECcCCcCcCCCCc-------------ccccCCCCccEEEccCCccccccccccCCCCccceeE
Q 003084 177 SS---SPLVHLTSIEELRLSNNHFRIPVSL-------------EPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKS 240 (850)
Q Consensus 177 ~~---~~~~~l~~L~~L~L~~n~~~~~~~~-------------~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~ 240 (850)
|. ..+.+-+.|.+|.+++|.+. ++.- ...++-+.|+.+.+..|++........
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~---------- 177 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELS---------- 177 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHH----------
Confidence 33 12345566777777777553 1111 113345677777777776643221110
Q ss_pred EEccCCCCCCcccCccccCCCCccEEEccCCcccccCchhh----hhcCCCCcEEEccCCcCcCcCc----cCcCCCCCc
Q 003084 241 LSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWL----LENNTKLEFLYLVNDSLAGPFR----LPIHSHKRL 312 (850)
Q Consensus 241 L~ls~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~L~~L~L~~~~~~~~~~----~~~~~~~~L 312 (850)
...+.....|+++.+..|.+.......+ ...+.+|+.|++.+|.++-... ..+...+.|
T Consensus 178 -------------a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l 244 (388)
T COG5238 178 -------------AALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred -------------HHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence 0111122344555554444332211110 1234556666666665543221 223445556
Q ss_pred cEEEccCCcCCcCCChhhhhc-----CCCCcEEEccCCcCc
Q 003084 313 RFLDVSNNNFQGHIPVEIGDI-----LPSLVYFNISMNALD 348 (850)
Q Consensus 313 ~~L~Ls~n~l~~~~~~~~~~~-----l~~L~~L~L~~n~l~ 348 (850)
+.|.+..|-++.....+++.. .|+|..|...+|...
T Consensus 245 rEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 245 RELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred hhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 677776666654444443322 355566665555543
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.85 E-value=1.4e-05 Score=55.02 Aligned_cols=36 Identities=42% Similarity=0.700 Sum_probs=15.7
Q ss_pred CCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCc
Q 003084 678 RIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 714 (850)
Q Consensus 678 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 714 (850)
+|++|++++|+|+. +|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 34444444444442 2333444444555555544444
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.81 E-value=1.6e-06 Score=73.79 Aligned_cols=88 Identities=22% Similarity=0.349 Sum_probs=62.4
Q ss_pred CCCCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCC
Q 003084 308 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLE 387 (850)
Q Consensus 308 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 387 (850)
....|+..+|++|.+. .+|..+...++.++.+++++|.+. .+|..+..++.|+.|+++.|.+. ..|.-++. +.++.
T Consensus 51 ~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~-L~~l~ 126 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAP-LIKLD 126 (177)
T ss_pred CCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHH-HHhHH
Confidence 3455667777777776 677777666777777777777777 56666777777777777777777 66666665 66777
Q ss_pred EEEccCCccCcc
Q 003084 388 FLSLSNNSLKGH 399 (850)
Q Consensus 388 ~L~l~~n~l~~~ 399 (850)
.|+..+|.+..+
T Consensus 127 ~Lds~~na~~ei 138 (177)
T KOG4579|consen 127 MLDSPENARAEI 138 (177)
T ss_pred HhcCCCCccccC
Confidence 777777766533
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.77 E-value=6.3e-05 Score=78.72 Aligned_cols=32 Identities=19% Similarity=0.360 Sum_probs=16.6
Q ss_pred CCCCEEECcCCcCCccCcccCCCCCCCCEEECcCC
Q 003084 677 TRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 711 (850)
Q Consensus 677 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 711 (850)
++|+.|++++|... ..|..+. .+|+.|+++.|
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 35666666665544 2333333 45666666554
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.77 E-value=4.6e-06 Score=95.02 Aligned_cols=154 Identities=23% Similarity=0.265 Sum_probs=107.8
Q ss_pred CCCCcEEeCCCCcCCCc-ccCCcCCCCCcccEEecccCCcccccchhhHhhhcCCCCcEEEccCCCCCCCCCccCCcCCC
Q 003084 55 FPSLKNLSMSGCEVNGV-LSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLC 133 (850)
Q Consensus 55 ~~~L~~L~Ls~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~ls~n~i~~~~~~i~~~~l~ 133 (850)
-.+|++|+++|...... .+...-..+|.|++|.+ .+-.+...-...++.++|+|+.||+|+++++. + ..++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i--~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n----l--~GIS 192 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVI--SGRQFDNDDFSQLCASFPNLRSLDISGTNISN----L--SGIS 192 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEe--cCceecchhHHHHhhccCccceeecCCCCccC----c--HHHh
Confidence 35799999999664322 22223457799999999 77666444345555669999999999999976 3 4788
Q ss_pred CCCCCCEEEccCCcccc-ccCccccCCCCCCEEECCCCcCcCCCCc------ccccCCCCCCeEECcCCcCcCCCCcccc
Q 003084 134 PLAHLQELYIDNNDLRG-SLPWCLANTTSLRILDVSFNQLTGSISS------SPLVHLTSIEELRLSNNHFRIPVSLEPL 206 (850)
Q Consensus 134 ~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~i~~------~~~~~l~~L~~L~L~~n~~~~~~~~~~l 206 (850)
.+++|+.|.+.+-.+.. ..-..+.++++|+.||+|..... ..+. ..-..||+|+.||.|++.+....-...+
T Consensus 193 ~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll 271 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELL 271 (699)
T ss_pred ccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHH
Confidence 99999999998876653 33345778999999999987654 2221 0123589999999999887754433334
Q ss_pred cCCCCccEEEc
Q 003084 207 FNHSKLKIFDA 217 (850)
Q Consensus 207 ~~l~~L~~L~l 217 (850)
..-++|+.+.+
T Consensus 272 ~sH~~L~~i~~ 282 (699)
T KOG3665|consen 272 NSHPNLQQIAA 282 (699)
T ss_pred HhCccHhhhhh
Confidence 44566665543
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.76 E-value=2.1e-05 Score=54.22 Aligned_cols=38 Identities=42% Similarity=0.718 Sum_probs=32.2
Q ss_pred cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCcc
Q 003084 654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGT 692 (850)
Q Consensus 654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 692 (850)
+|++|++++|+|+ .+|..++++++|+.|++++|+++..
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCC
Confidence 6999999999999 4666799999999999999999843
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.73 E-value=9.1e-06 Score=77.50 Aligned_cols=92 Identities=17% Similarity=0.212 Sum_probs=53.5
Q ss_pred CCCCCCEEEccCCccccc----cCccccCCCCCCEEECCCCcCcCC----CCcccccCCCCCCeEECcCCcCcCC---CC
Q 003084 134 PLAHLQELYIDNNDLRGS----LPWCLANTTSLRILDVSFNQLTGS----ISSSPLVHLTSIEELRLSNNHFRIP---VS 202 (850)
Q Consensus 134 ~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~i~~~----i~~~~~~~l~~L~~L~L~~n~~~~~---~~ 202 (850)
+-+.|++.+...|++..- ....+.....|+.+.+.+|.|.-. +.-..+..+.+|++||+..|.++-. .-
T Consensus 155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L 234 (388)
T COG5238 155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL 234 (388)
T ss_pred cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence 456777777777776531 222344446777777777776511 1111234567788888888877621 11
Q ss_pred cccccCCCCccEEEccCCccccc
Q 003084 203 LEPLFNHSKLKIFDAKNNEINGE 225 (850)
Q Consensus 203 ~~~l~~l~~L~~L~l~~n~~~~~ 225 (850)
...+...+.|+.|.+..|-++..
T Consensus 235 a~al~~W~~lrEL~lnDClls~~ 257 (388)
T COG5238 235 ADALCEWNLLRELRLNDCLLSNE 257 (388)
T ss_pred HHHhcccchhhhccccchhhccc
Confidence 12234455677788877776543
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.68 E-value=9.6e-05 Score=66.24 Aligned_cols=105 Identities=23% Similarity=0.246 Sum_probs=35.5
Q ss_pred hhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCC
Q 003084 330 IGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRN 409 (850)
Q Consensus 330 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 409 (850)
+|..+++|+.+.+.. .+......+|.++++|+.+.+.++ +. .++...|.++++++.+.+.+ .+.......|..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccc
Confidence 333344444444442 233333334444444555554442 33 44444444444444444433 222223333444444
Q ss_pred CCeeeccCCcCcccCCcCCCCCCCCcEEECc
Q 003084 410 LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLN 440 (850)
Q Consensus 410 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 440 (850)
|+.+.+..+ +.......|.++ +++.+.+.
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 444444332 222223334443 44444443
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.64 E-value=0.00011 Score=65.86 Aligned_cols=82 Identities=18% Similarity=0.158 Sum_probs=28.4
Q ss_pred hhcCCCCcEEEccCCcCcCcCccCcCCCCCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCC
Q 003084 282 LENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFL 361 (850)
Q Consensus 282 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 361 (850)
|.++++|+.+.+.. .+.......|..+++|+.+.+..+ +. .++...+..+++++.+.+.. .+.......|..++++
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccccc
Confidence 44444555555442 233333344444444555554443 32 33444444444444444433 2222223334444444
Q ss_pred CEEEcc
Q 003084 362 QFLDLS 367 (850)
Q Consensus 362 ~~L~L~ 367 (850)
+.+++.
T Consensus 84 ~~i~~~ 89 (129)
T PF13306_consen 84 KNIDIP 89 (129)
T ss_dssp CEEEET
T ss_pred cccccC
Confidence 444443
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.62 E-value=0.00012 Score=67.23 Aligned_cols=108 Identities=20% Similarity=0.243 Sum_probs=73.0
Q ss_pred CCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCC
Q 003084 107 MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTS 186 (850)
Q Consensus 107 l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~ 186 (850)
+.+...+||++|.+.. + ..|..++.|.+|.|++|+|+.+.|.--.-+++|..|.|.+|.|..--....+..|++
T Consensus 41 ~d~~d~iDLtdNdl~~----l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~ 114 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK----L--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPK 114 (233)
T ss_pred ccccceecccccchhh----c--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCc
Confidence 4567778888888754 2 367778888888888888887777666667788888888887752112224677788
Q ss_pred CCeEECcCCcCcCC--CCcccccCCCCccEEEccCC
Q 003084 187 IEELRLSNNHFRIP--VSLEPLFNHSKLKIFDAKNN 220 (850)
Q Consensus 187 L~~L~L~~n~~~~~--~~~~~l~~l~~L~~L~l~~n 220 (850)
|++|.+-+|++... ...-.+..+++|+.||.+.-
T Consensus 115 L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 115 LEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 88888888876521 22223456677777776554
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.56 E-value=0.00011 Score=67.40 Aligned_cols=105 Identities=24% Similarity=0.258 Sum_probs=53.9
Q ss_pred CCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCc-ccccCCCCCcEE
Q 003084 383 CVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIP-RWLGNLKGLQHI 461 (850)
Q Consensus 383 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L 461 (850)
..+...+|+++|.+.. .+.|..++.|.+|.+.+|+|+.+.|.--.-+++|..|.+.+|++..... ..+..|++|++|
T Consensus 41 ~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 3445555666555542 2234455566666666666665544433344556666666665542211 234455566666
Q ss_pred ECCCCccccCc---chhccCCCCCCEEeccC
Q 003084 462 VMPKNHLEGPI---PVEFCRLDSLQILDISD 489 (850)
Q Consensus 462 ~l~~n~l~~~~---~~~~~~l~~L~~L~ls~ 489 (850)
.+-+|+++..- ...+..+++|+.||+.+
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhh
Confidence 66665554321 12344566666666654
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.45 E-value=0.00076 Score=70.82 Aligned_cols=53 Identities=17% Similarity=0.172 Sum_probs=22.9
Q ss_pred CCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCC
Q 003084 310 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN 369 (850)
Q Consensus 310 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 369 (850)
.+++.|++++|.++ .+|. ..++|++|.+++|.--..+|..+ .++|++|++++|
T Consensus 52 ~~l~~L~Is~c~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred cCCCEEEeCCCCCc-ccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 44445555555444 3441 12345555555433222333322 134555555554
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.09 E-value=0.00036 Score=67.18 Aligned_cols=85 Identities=21% Similarity=0.312 Sum_probs=48.1
Q ss_pred CCCCCCEEeCCCCcCCccccCccccCCCCCCCEEEcCCC--CCcccchhhhhccCCCCcEEeCCCCcCCCcccCCcCCCC
Q 003084 3 SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDS--SLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHF 80 (850)
Q Consensus 3 ~l~~L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n--~i~~~~~~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~~l 80 (850)
.+..|+.|++.+..++.. ..+-.+++|++|.+|.| ++.......... +|+|++|++++|++...-....+..+
T Consensus 41 ~~~~le~ls~~n~gltt~----~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~-~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL----TNFPKLPKLKKLELSDNYRRVSGGLEVLAEK-APNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred cccchhhhhhhccceeec----ccCCCcchhhhhcccCCcccccccceehhhh-CCceeEEeecCCccccccccchhhhh
Confidence 345566666666655543 33555667777777777 444442223333 67777777777776532222234555
Q ss_pred CcccEEecccCCcc
Q 003084 81 KSLEHLDMRFARIA 94 (850)
Q Consensus 81 ~~L~~L~L~~~~~~ 94 (850)
++|..|++ .+|.
T Consensus 116 ~nL~~Ldl--~n~~ 127 (260)
T KOG2739|consen 116 ENLKSLDL--FNCS 127 (260)
T ss_pred cchhhhhc--ccCC
Confidence 66666666 4444
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.95 E-value=7.4e-05 Score=84.53 Aligned_cols=115 Identities=22% Similarity=0.240 Sum_probs=54.7
Q ss_pred CCCCCCEEEcCCC-CCcccchhhhhccCCCCcEEeCCCC-cCCCccc---CCcCCCCCcccEEecccCCcc-cccchhhH
Q 003084 29 NFTNLEYLTLDDS-SLHISLLQSIGSIFPSLKNLSMSGC-EVNGVLS---GQGFPHFKSLEHLDMRFARIA-LNTSFLQI 102 (850)
Q Consensus 29 ~l~~L~~L~Ls~n-~i~~~~~~~l~~~~~~L~~L~Ls~~-~~~~~~~---~~~~~~l~~L~~L~L~~~~~~-~~~~~~~~ 102 (850)
.++.|+.|.+..+ .+.......+...++.|+.|+++++ ......+ ......+++|+.|++ ..+. +++.....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l--~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDL--SGCGLVTDIGLSA 263 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccch--hhhhccCchhHHH
Confidence 3566666666655 3333222222222666666666652 1110111 112344466666666 4444 45555555
Q ss_pred hhhcCCCCcEEEccCCC-CCCCCCccCCcCCCCCCCCCEEEccCCcc
Q 003084 103 IGESMPSLKYLSLSGST-LGTNSSRILDQGLCPLAHLQELYIDNNDL 148 (850)
Q Consensus 103 l~~~l~~L~~L~ls~n~-i~~~~~~i~~~~l~~l~~L~~L~L~~n~l 148 (850)
++..|++|+.|.+.++. ++. .-.......++.|++|++++|..
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~---~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTD---EGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HHhhCCCcceEccCCCCccch---hHHHHHHHhcCcccEEeeecCcc
Confidence 55546666666655555 333 11112334455666666666543
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.60 E-value=0.00029 Score=79.64 Aligned_cols=62 Identities=27% Similarity=0.188 Sum_probs=27.4
Q ss_pred CCCCcEEEccCCc-CcccCcccccC-CCCCCEEEccCCc-CCCCcchHHhhcCCCCCEEEccCCc
Q 003084 334 LPSLVYFNISMNA-LDGSIPSSFGN-VIFLQFLDLSNNK-LTGEIPDHLAMCCVNLEFLSLSNNS 395 (850)
Q Consensus 334 l~~L~~L~L~~n~-l~~~~~~~~~~-l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~ 395 (850)
+++|+.++++.+. ++...-..+.. +++|++|.+.++. +++..-..+...+++|++|+++.+.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 4455555555554 33222122211 4455555544444 3333333334445555555555543
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.48 E-value=0.0017 Score=62.67 Aligned_cols=83 Identities=25% Similarity=0.407 Sum_probs=40.6
Q ss_pred CCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCC--ccccccCccccCCCCCCEEECCCCcCcC--CCCccccc
Q 003084 107 MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNN--DLRGSLPWCLANTTSLRILDVSFNQLTG--SISSSPLV 182 (850)
Q Consensus 107 l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--~i~~~~~~ 182 (850)
+..|+.|++.+..++. + ..+..+++|++|.++.| ++.+.++--...+++|++|++++|+++. +++ .+.
T Consensus 42 ~~~le~ls~~n~gltt----~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~--pl~ 113 (260)
T KOG2739|consen 42 FVELELLSVINVGLTT----L--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR--PLK 113 (260)
T ss_pred ccchhhhhhhccceee----c--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc--hhh
Confidence 4455555555555443 1 23445566666666666 4444433334444566666666665541 111 133
Q ss_pred CCCCCCeEECcCCcC
Q 003084 183 HLTSIEELRLSNNHF 197 (850)
Q Consensus 183 ~l~~L~~L~L~~n~~ 197 (850)
.+.+|..|++.+|..
T Consensus 114 ~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSV 128 (260)
T ss_pred hhcchhhhhcccCCc
Confidence 444445555555443
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.00019 Score=69.01 Aligned_cols=84 Identities=18% Similarity=0.199 Sum_probs=61.0
Q ss_pred CCCCCEEEcCCCCCcccchhhhhccCCCCcEEeCCCCcCCCcccCCcCCCCCcccEEecccCCcccccchh-hHhhhcCC
Q 003084 30 FTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFL-QIIGESMP 108 (850)
Q Consensus 30 l~~L~~L~Ls~n~i~~~~~~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~-~~l~~~l~ 108 (850)
+.+.+.|++-++.+++. ..... ++.|++|.||-|+|+..- .+.+|++|++|+| ..|.+.+.-- .-+.+ +|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~k-Mp~lEVLsLSvNkIssL~---pl~rCtrLkElYL--RkN~I~sldEL~YLkn-lp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEK-MPLLEVLSLSVNKISSLA---PLQRCTRLKELYL--RKNCIESLDELEYLKN-LP 88 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHh-cccceeEEeeccccccch---hHHHHHHHHHHHH--HhcccccHHHHHHHhc-Cc
Confidence 55778888888887755 22334 899999999999988443 4889999999999 7776654432 23334 88
Q ss_pred CCcEEEccCCCCCC
Q 003084 109 SLKYLSLSGSTLGT 122 (850)
Q Consensus 109 ~L~~L~ls~n~i~~ 122 (850)
+|+.|.|..|.-.+
T Consensus 89 sLr~LWL~ENPCc~ 102 (388)
T KOG2123|consen 89 SLRTLWLDENPCCG 102 (388)
T ss_pred hhhhHhhccCCccc
Confidence 88888888776544
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.0002 Score=68.89 Aligned_cols=101 Identities=15% Similarity=0.138 Sum_probs=76.9
Q ss_pred CCCCCEEeCCCCcCCccccCccccCCCCCCCEEEcCCCCCcccchhhhhccCCCCcEEeCCCCcCCCcccCCcCCCCCcc
Q 003084 4 FPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSL 83 (850)
Q Consensus 4 l~~L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L 83 (850)
+.+++.|++-|+.++++ ....+++.|+.|.||-|.|+.. ..+.. |++|+.|.|..|.|...-....+.++++|
T Consensus 18 l~~vkKLNcwg~~L~DI----sic~kMp~lEVLsLSvNkIssL--~pl~r-CtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI----SICEKMPLLEVLSLSVNKISSL--APLQR-CTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccCCCccHH----HHHHhcccceeEEeeccccccc--hhHHH-HHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 56788899999999886 3366899999999999999865 56777 99999999999998765444467899999
Q ss_pred cEEecccCCcccccchh-----hHhhhcCCCCcEEE
Q 003084 84 EHLDMRFARIALNTSFL-----QIIGESMPSLKYLS 114 (850)
Q Consensus 84 ~~L~L~~~~~~~~~~~~-----~~l~~~l~~L~~L~ 114 (850)
++|.| ..|+-.+... ..+.. +|+|++||
T Consensus 91 r~LWL--~ENPCc~~ag~nYR~~VLR~-LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWL--DENPCCGEAGQNYRRKVLRV-LPNLKKLD 123 (388)
T ss_pred hhHhh--ccCCcccccchhHHHHHHHH-cccchhcc
Confidence 99999 5554333321 12223 77787776
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.69 E-value=0.012 Score=33.49 Aligned_cols=12 Identities=58% Similarity=0.769 Sum_probs=5.2
Q ss_pred CCEEECcCCcCC
Q 003084 679 IQTLNLSHNNLT 690 (850)
Q Consensus 679 L~~L~Ls~N~l~ 690 (850)
|++|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.68 E-value=0.014 Score=33.26 Aligned_cols=12 Identities=58% Similarity=0.598 Sum_probs=5.8
Q ss_pred CCeEEccCCccc
Q 003084 655 LAGLDLSCNKLV 666 (850)
Q Consensus 655 L~~L~Ls~n~l~ 666 (850)
|++|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 444444444444
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.23 E-value=0.0065 Score=56.22 Aligned_cols=79 Identities=19% Similarity=0.383 Sum_probs=54.3
Q ss_pred CCEEeCCCCcCCccccCccccCCCCCCCEEEcCCC-CCcccchhhhhccCCCCcEEeCCCCc-CCCcccCCcCCCCCccc
Q 003084 7 LNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDS-SLHISLLQSIGSIFPSLKNLSMSGCE-VNGVLSGQGFPHFKSLE 84 (850)
Q Consensus 7 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~l~~~~~~L~~L~Ls~~~-~~~~~~~~~~~~l~~L~ 84 (850)
++.+|-+++.|..+. .+.+.+++.++.|.+.++ .+.+-....++...++|+.|+|++|. |++. ....+.++++|+
T Consensus 103 IeaVDAsds~I~~eG--le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr 179 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEG--LEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-GLACLLKLKNLR 179 (221)
T ss_pred EEEEecCCchHHHHH--HHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-HHHHHHHhhhhH
Confidence 467777887777665 677778888888888887 45544455566667888888888876 3322 222466777777
Q ss_pred EEec
Q 003084 85 HLDM 88 (850)
Q Consensus 85 ~L~L 88 (850)
.|.+
T Consensus 180 ~L~l 183 (221)
T KOG3864|consen 180 RLHL 183 (221)
T ss_pred HHHh
Confidence 7777
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.07 E-value=0.00042 Score=75.75 Aligned_cols=186 Identities=25% Similarity=0.264 Sum_probs=108.1
Q ss_pred CCEEEcCCCCCcccchhh----hhccCCCCcEEeCCCCcCCCcccC---CcCCCC-CcccEEecccCCcccccch----h
Q 003084 33 LEYLTLDDSSLHISLLQS----IGSIFPSLKNLSMSGCEVNGVLSG---QGFPHF-KSLEHLDMRFARIALNTSF----L 100 (850)
Q Consensus 33 L~~L~Ls~n~i~~~~~~~----l~~~~~~L~~L~Ls~~~~~~~~~~---~~~~~l-~~L~~L~L~~~~~~~~~~~----~ 100 (850)
+..|.|.+|.+.+...+. +.. .+.|+.|++++|.+.+.... ..+... ..|++|++ ..|.+++.. .
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t-~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l--~~c~l~~~g~~~l~ 165 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKT-LPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLEL--VSCSLTSEGAAPLA 165 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcc-cccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHh--hcccccccchHHHH
Confidence 677777777777665543 333 56677777777776522110 122332 55666777 566655443 3
Q ss_pred hHhhhcCCCCcEEEccCCCCCCCCCccCCcCCC----CCCCCCEEEccCCcccc----ccCccccCCCC-CCEEECCCCc
Q 003084 101 QIIGESMPSLKYLSLSGSTLGTNSSRILDQGLC----PLAHLQELYIDNNDLRG----SLPWCLANTTS-LRILDVSFNQ 171 (850)
Q Consensus 101 ~~l~~~l~~L~~L~ls~n~i~~~~~~i~~~~l~----~l~~L~~L~L~~n~l~~----~~~~~~~~l~~-L~~L~Ls~n~ 171 (850)
..+.. ..+++.++++.|.+...+....+..+. ...++++|++++|.++. .+...+...+. ++.|++.+|.
T Consensus 166 ~~L~~-~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~ 244 (478)
T KOG4308|consen 166 AVLEK-NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK 244 (478)
T ss_pred HHHhc-ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence 34444 677788888888775444333333443 46778888888887652 12334455555 6678888887
Q ss_pred CcCC----CCcccccCC-CCCCeEECcCCcCcCCC---CcccccCCCCccEEEccCCccc
Q 003084 172 LTGS----ISSSPLVHL-TSIEELRLSNNHFRIPV---SLEPLFNHSKLKIFDAKNNEIN 223 (850)
Q Consensus 172 i~~~----i~~~~~~~l-~~L~~L~L~~n~~~~~~---~~~~l~~l~~L~~L~l~~n~~~ 223 (850)
+.+. +.. .+..+ ..+++++++.|.+.... ....+..++.++.+.++.|.+.
T Consensus 245 l~d~g~~~L~~-~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 245 LGDVGVEKLLP-CLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred cchHHHHHHHH-HhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 6532 111 23334 56678888888776321 1223445666777777766654
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.01 E-value=0.0043 Score=67.98 Aligned_cols=190 Identities=27% Similarity=0.302 Sum_probs=130.2
Q ss_pred CCEEeCCCCcCCccc--cCccccCCCCCCCEEEcCCCCCcccchhhhhcc---C-CCCcEEeCCCCcCCCcccC---CcC
Q 003084 7 LNTLHLESNNFTATL--TTTQELHNFTNLEYLTLDDSSLHISLLQSIGSI---F-PSLKNLSMSGCEVNGVLSG---QGF 77 (850)
Q Consensus 7 L~~L~Ls~~~~~~~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~~---~-~~L~~L~Ls~~~~~~~~~~---~~~ 77 (850)
+..|.|.+|.+++.. .....+.....|..|++++|.+.+.....+.+. . ..+++|++..|.+++.... ..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 677888888887542 114567788899999999999886655544432 2 4578888888887654322 135
Q ss_pred CCCCcccEEecccCCcccccc----hhhHhhh---cCCCCcEEEccCCCCCCCCCccCCcCCCCCCC-CCEEEccCCccc
Q 003084 78 PHFKSLEHLDMRFARIALNTS----FLQIIGE---SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAH-LQELYIDNNDLR 149 (850)
Q Consensus 78 ~~l~~L~~L~L~~~~~~~~~~----~~~~l~~---~l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~-L~~L~L~~n~l~ 149 (850)
.....++.+++ ..|.+... .+..+.. ...++++|.+++|.++..........+...+. +..+++..|.+.
T Consensus 169 ~~~~~l~~l~l--~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 169 EKNEHLTELDL--SLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred hcccchhHHHH--HhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 56788899998 66665322 2222221 25678999999999876444444445555666 777999999876
Q ss_pred cc----cCccccCC-CCCCEEECCCCcCcCC----CCcccccCCCCCCeEECcCCcCcC
Q 003084 150 GS----LPWCLANT-TSLRILDVSFNQLTGS----ISSSPLVHLTSIEELRLSNNHFRI 199 (850)
Q Consensus 150 ~~----~~~~~~~l-~~L~~L~Ls~n~i~~~----i~~~~~~~l~~L~~L~L~~n~~~~ 199 (850)
.. ....+..+ ..+++++++.|.++.. +.. .+..+++++++.++.|.+..
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~-~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAE-VLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHH-HHhhhHHHHHhhcccCcccc
Confidence 43 33445555 7889999999998743 222 45677899999999998873
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.43 E-value=0.17 Score=26.60 Aligned_cols=12 Identities=58% Similarity=0.775 Sum_probs=4.0
Q ss_pred CCCEEECCCCcC
Q 003084 161 SLRILDVSFNQL 172 (850)
Q Consensus 161 ~L~~L~Ls~n~i 172 (850)
+|+.|++++|++
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 344444444444
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.60 E-value=0.0095 Score=56.17 Aligned_cols=82 Identities=23% Similarity=0.223 Sum_probs=69.6
Q ss_pred cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcc
Q 003084 654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 733 (850)
Q Consensus 654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 733 (850)
..+.||++.|++. .....|+-++.|..|+++.|.+. ..|..++++..+..+++..|..+ ..|-++...+.+++++.-
T Consensus 43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence 5788999999887 45567888889999999999987 77888888888888998888887 778888999999999999
Q ss_pred CCcCc
Q 003084 734 YNNLS 738 (850)
Q Consensus 734 ~N~l~ 738 (850)
+|++.
T Consensus 120 ~~~~~ 124 (326)
T KOG0473|consen 120 KTEFF 124 (326)
T ss_pred cCcch
Confidence 88864
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.58 E-value=0.3 Score=29.04 Aligned_cols=13 Identities=54% Similarity=0.759 Sum_probs=5.6
Q ss_pred CCCEEECcCCcCc
Q 003084 702 HIESLDLSYNKLS 714 (850)
Q Consensus 702 ~L~~L~Ls~N~l~ 714 (850)
+|+.|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.58 E-value=0.3 Score=29.04 Aligned_cols=13 Identities=54% Similarity=0.759 Sum_probs=5.6
Q ss_pred CCCEEECcCCcCc
Q 003084 702 HIESLDLSYNKLS 714 (850)
Q Consensus 702 ~L~~L~Ls~N~l~ 714 (850)
+|+.|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.07 E-value=0.34 Score=28.79 Aligned_cols=16 Identities=31% Similarity=0.569 Sum_probs=9.6
Q ss_pred CCCCEEECcCCcCCcc
Q 003084 677 TRIQTLNLSHNNLTGT 692 (850)
Q Consensus 677 ~~L~~L~Ls~N~l~~~ 692 (850)
++|+.|+|++|+|+.+
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4566666666666643
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.07 E-value=0.34 Score=28.79 Aligned_cols=16 Identities=31% Similarity=0.569 Sum_probs=9.6
Q ss_pred CCCCEEECcCCcCCcc
Q 003084 677 TRIQTLNLSHNNLTGT 692 (850)
Q Consensus 677 ~~L~~L~Ls~N~l~~~ 692 (850)
++|+.|+|++|+|+.+
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4566666666666643
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.00 E-value=0.023 Score=53.70 Aligned_cols=88 Identities=25% Similarity=0.301 Sum_probs=72.0
Q ss_pred ccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCccccCC
Q 003084 671 PQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFAT 750 (850)
Q Consensus 671 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~ 750 (850)
..+....+.+.||++.|++. ..-..|.-++.|..||++.|++. ..|..+..+..+..++..+|..+. .|..+++.+.
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~~ 112 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ-QPKSQKKEPH 112 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh-CCccccccCC
Confidence 45677889999999999987 44567888899999999999998 889999999999999999998884 4444677777
Q ss_pred CCccccCCCCC
Q 003084 751 FNKSSYDGNPF 761 (850)
Q Consensus 751 ~~~~~~~~n~~ 761 (850)
.......+||+
T Consensus 113 ~k~~e~k~~~~ 123 (326)
T KOG0473|consen 113 PKKNEQKKTEF 123 (326)
T ss_pred cchhhhccCcc
Confidence 77766667663
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=85.92 E-value=0.28 Score=28.51 Aligned_cols=13 Identities=38% Similarity=0.611 Sum_probs=4.8
Q ss_pred CCCEEEcCCCCCc
Q 003084 32 NLEYLTLDDSSLH 44 (850)
Q Consensus 32 ~L~~L~Ls~n~i~ 44 (850)
+|++|+|++|.|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.24 E-value=0.22 Score=46.42 Aligned_cols=59 Identities=22% Similarity=0.321 Sum_probs=25.5
Q ss_pred CcEEeCCCCcCCCcccCCcCCCCCcccEEecccCCcc-cccchhhHhhhcCCCCcEEEccCCC
Q 003084 58 LKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIA-LNTSFLQIIGESMPSLKYLSLSGST 119 (850)
Q Consensus 58 L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~-~~~~~~~~l~~~l~~L~~L~ls~n~ 119 (850)
++.++=+++.|....- +.+.+++.++.|.+ .+|. +.+.-.+.++...++|+.|++++|.
T Consensus 103 IeaVDAsds~I~~eGl-e~L~~l~~i~~l~l--~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~ 162 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGL-EHLRDLRSIKSLSL--ANCKYFDDWCLERLGGLAPSLQDLDLSGCP 162 (221)
T ss_pred EEEEecCCchHHHHHH-HHHhccchhhhhee--ccccchhhHHHHHhcccccchheeeccCCC
Confidence 4444444444432211 13444444444444 4443 2222233333334566666666553
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.93 E-value=0.29 Score=28.45 Aligned_cols=15 Identities=40% Similarity=0.698 Sum_probs=6.7
Q ss_pred CCCCEEECcCCcCcc
Q 003084 701 RHIESLDLSYNKLSG 715 (850)
Q Consensus 701 ~~L~~L~Ls~N~l~~ 715 (850)
++|+.|+|++|+|++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 345555555555543
No 86
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=79.09 E-value=1.1 Score=37.84 Aligned_cols=33 Identities=24% Similarity=0.161 Sum_probs=23.3
Q ss_pred hhhHHHHHHHhhhhhhhhcchhhhHHHHHHHHH
Q 003084 799 FTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMW 831 (850)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (850)
.++++.++++++++..++++|.|++++.+.|+.
T Consensus 105 ~il~il~~i~is~~~~~~yr~~r~~~~~~~~~~ 137 (139)
T PHA03099 105 GIVLVLVGIIITCCLLSVYRFTRRTKLPLQDMV 137 (139)
T ss_pred HHHHHHHHHHHHHHHHhhheeeecccCchhhcc
Confidence 445555566666677888899999988776543
No 87
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=79.06 E-value=0.54 Score=60.82 Aligned_cols=37 Identities=22% Similarity=0.102 Sum_probs=32.7
Q ss_pred ECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCC
Q 003084 707 DLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 743 (850)
Q Consensus 707 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~ 743 (850)
||++|+|+.+.+..|..+++|+.|+|++|++.|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L 37 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGL 37 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccccccc
Confidence 6899999988888999999999999999999887764
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=78.55 E-value=11 Score=40.32 Aligned_cols=33 Identities=12% Similarity=0.198 Sum_probs=15.6
Q ss_pred CccEEEccCCccccccccccCCCCccceeEEEc
Q 003084 211 KLKIFDAKNNEINGEINESHSLTPKFQLKSLSL 243 (850)
Q Consensus 211 ~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l 243 (850)
.++.+....|...+..............+.+.+
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~a 387 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKA 387 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccc
Confidence 355666666555544433333333334444444
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=73.28 E-value=3 Score=24.79 Aligned_cols=14 Identities=50% Similarity=0.731 Sum_probs=8.8
Q ss_pred CCCCEEECcCCcCc
Q 003084 701 RHIESLDLSYNKLS 714 (850)
Q Consensus 701 ~~L~~L~Ls~N~l~ 714 (850)
++|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666664
No 90
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=71.79 E-value=0.74 Score=30.36 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=10.3
Q ss_pred ehhhhHHHHHHHhhhhhhhhcchhhh
Q 003084 797 ITFTISYVIVIFGIVVVLYVNPYWRR 822 (850)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (850)
++++++.-++++++++.++++.|||+
T Consensus 13 Ia~~VvVPV~vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 13 IAVGVVVPVGVIIIVLGAFLFFWYRR 38 (40)
T ss_pred EEEEEEechHHHHHHHHHHhheEEec
Confidence 33333333333333333344445554
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=66.09 E-value=4.2 Score=24.64 Aligned_cols=15 Identities=27% Similarity=0.297 Sum_probs=7.9
Q ss_pred CCCEEEcCCCCCccc
Q 003084 32 NLEYLTLDDSSLHIS 46 (850)
Q Consensus 32 ~L~~L~Ls~n~i~~~ 46 (850)
+|++|+|++|.+...
T Consensus 3 ~L~~LdL~~N~i~~~ 17 (28)
T smart00368 3 SLRELDLSNNKLGDE 17 (28)
T ss_pred ccCEEECCCCCCCHH
Confidence 455555555555443
No 92
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=65.51 E-value=4.3 Score=24.07 Aligned_cols=13 Identities=31% Similarity=0.606 Sum_probs=7.3
Q ss_pred CCCEEECcCCcCc
Q 003084 702 HIESLDLSYNKLS 714 (850)
Q Consensus 702 ~L~~L~Ls~N~l~ 714 (850)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4555555555555
No 93
>PF15102 TMEM154: TMEM154 protein family
Probab=64.84 E-value=4 Score=36.05 Aligned_cols=23 Identities=13% Similarity=0.326 Sum_probs=12.6
Q ss_pred hHHHHHHHhhhhhhhhcchhhhH
Q 003084 801 ISYVIVIFGIVVVLYVNPYWRRR 823 (850)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~ 823 (850)
+.+++++++|+++++++||||.+
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred HHHHHHHHHHHHheeEEeecccC
Confidence 34444455555556666666654
No 94
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=61.33 E-value=5.6 Score=23.52 Aligned_cols=11 Identities=36% Similarity=0.434 Sum_probs=4.7
Q ss_pred CCCCEEEcCCC
Q 003084 31 TNLEYLTLDDS 41 (850)
Q Consensus 31 ~~L~~L~Ls~n 41 (850)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34444444444
No 95
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=60.46 E-value=49 Score=35.69 Aligned_cols=107 Identities=21% Similarity=0.169 Sum_probs=46.7
Q ss_pred CCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccc---cCCCCCCEEEccCCcCCCCcchHHhhcCC--
Q 003084 310 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSF---GNVIFLQFLDLSNNKLTGEIPDHLAMCCV-- 384 (850)
Q Consensus 310 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-- 384 (850)
+.++++|++.|.+....|..+... .--+.++.|..+...-..+ ..-..+.+++++.|...+.+|..+.....
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p---~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~ 241 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQP---GNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTL 241 (553)
T ss_pred chhhhhccCCCcccccCCccccCC---CCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhh
Confidence 455566666666655544433221 1114444554432111100 11124667777777766666655432221
Q ss_pred CCCEEEccCCccCc---cccccccCCCCCCeeeccCCc
Q 003084 385 NLEFLSLSNNSLKG---HIFSRIFSLRNLRWLLLEGNH 419 (850)
Q Consensus 385 ~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~ 419 (850)
-++.++.+...+.- ..+-.+..-+++...+++.|.
T Consensus 242 vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng 279 (553)
T KOG4242|consen 242 VLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNG 279 (553)
T ss_pred hhhcccccccccchhhcccccccccccccchhhhccCC
Confidence 24445544443321 111122233455555555554
No 96
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=54.66 E-value=10 Score=41.47 Aligned_cols=38 Identities=34% Similarity=0.435 Sum_probs=24.0
Q ss_pred CCCCCCEEEcCCCCCcccc-hhhhhccCCCCcEEeCCCC
Q 003084 29 NFTNLEYLTLDDSSLHISL-LQSIGSIFPSLKNLSMSGC 66 (850)
Q Consensus 29 ~l~~L~~L~Ls~n~i~~~~-~~~l~~~~~~L~~L~Ls~~ 66 (850)
+++.+..++|++|++.... ..++....|+|..|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 5666777777777655432 2245555677777777777
No 97
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=54.49 E-value=6.5 Score=42.93 Aligned_cols=70 Identities=19% Similarity=0.198 Sum_probs=47.4
Q ss_pred CCCCCCEEeCCCCcCCccccCccccCCCCCCCEEEcCCCCCcccchhhhhc-cCCCCcEEeCCCCcCCCcc
Q 003084 3 SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGS-IFPSLKNLSMSGCEVNGVL 72 (850)
Q Consensus 3 ~l~~L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~-~~~~L~~L~Ls~~~~~~~~ 72 (850)
+++.+..++|++|.+.........-...|+|+.|+|++|.........+.. ....|++|-+.||.+....
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccch
Confidence 578899999999988655321333446899999999999333222233333 1456888888888876543
No 98
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=54.37 E-value=6.6 Score=33.86 Aligned_cols=22 Identities=14% Similarity=0.273 Sum_probs=10.5
Q ss_pred ehhhhHHHHHHHhhhhhhhhcc
Q 003084 797 ITFTISYVIVIFGIVVVLYVNP 818 (850)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~ 818 (850)
+++++|+++++++++++++|..
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~i 88 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCI 88 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHHHHHH
Confidence 4444555555554444444443
No 99
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=47.25 E-value=12 Score=49.33 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=29.7
Q ss_pred ECcCCcCCccCcccCCCCCCCCEEECcCCcCcc
Q 003084 683 NLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG 715 (850)
Q Consensus 683 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 715 (850)
||++|+|+.+.+..|..+++|+.|+|++|++..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 689999998888899999999999999998864
No 100
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=46.68 E-value=14 Score=37.73 Aligned_cols=14 Identities=36% Similarity=0.804 Sum_probs=7.0
Q ss_pred hhhhhhhcchhhhH
Q 003084 810 IVVVLYVNPYWRRR 823 (850)
Q Consensus 810 ~~~~~~~~~~~~~~ 823 (850)
|++++|+..++||+
T Consensus 271 IMvIIYLILRYRRK 284 (299)
T PF02009_consen 271 IMVIIYLILRYRRK 284 (299)
T ss_pred HHHHHHHHHHHHHH
Confidence 44445555555553
No 101
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=41.19 E-value=22 Score=23.42 Aligned_cols=11 Identities=27% Similarity=0.731 Sum_probs=5.4
Q ss_pred hhhcchhhhHH
Q 003084 814 LYVNPYWRRRW 824 (850)
Q Consensus 814 ~~~~~~~~~~~ 824 (850)
.+.+|+|..++
T Consensus 27 ~~iYRKw~aRk 37 (43)
T PF08114_consen 27 LFIYRKWQARK 37 (43)
T ss_pred HHHHHHHHHHH
Confidence 34455555444
No 102
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=33.88 E-value=8.6 Score=34.26 Aligned_cols=9 Identities=11% Similarity=0.242 Sum_probs=4.3
Q ss_pred eeehhhhHH
Q 003084 795 FFITFTISY 803 (850)
Q Consensus 795 ~~~~~~~~~ 803 (850)
++|++++|+
T Consensus 50 IVIGvVVGV 58 (154)
T PF04478_consen 50 IVIGVVVGV 58 (154)
T ss_pred EEEEEEecc
Confidence 345555544
No 103
>PTZ00046 rifin; Provisional
Probab=33.25 E-value=26 Score=36.42 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=9.7
Q ss_pred hhhhhhhhcchhhhHHH
Q 003084 809 GIVVVLYVNPYWRRRWL 825 (850)
Q Consensus 809 ~~~~~~~~~~~~~~~~~ 825 (850)
+|++++|...|+||++-
T Consensus 329 LIMvIIYLILRYRRKKK 345 (358)
T PTZ00046 329 LIMVIIYLILRYRRKKK 345 (358)
T ss_pred HHHHHHHHHHHhhhcch
Confidence 34455666666666543
No 104
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=32.51 E-value=28 Score=36.10 Aligned_cols=15 Identities=33% Similarity=0.674 Sum_probs=8.9
Q ss_pred hhhhhhhcchhhhHH
Q 003084 810 IVVVLYVNPYWRRRW 824 (850)
Q Consensus 810 ~~~~~~~~~~~~~~~ 824 (850)
|++++|...|+||++
T Consensus 325 IMvIIYLILRYRRKK 339 (353)
T TIGR01477 325 IMVIIYLILRYRRKK 339 (353)
T ss_pred HHHHHHHHHHhhhcc
Confidence 445566666666653
No 105
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=31.64 E-value=14 Score=27.35 Aligned_cols=10 Identities=10% Similarity=0.059 Sum_probs=0.0
Q ss_pred hhhhHHHHHH
Q 003084 798 TFTISYVIVI 807 (850)
Q Consensus 798 ~~~~~~~~~~ 807 (850)
++++|.++++
T Consensus 13 avIaG~Vvgl 22 (64)
T PF01034_consen 13 AVIAGGVVGL 22 (64)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 106
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=30.43 E-value=27 Score=33.11 Aligned_cols=29 Identities=28% Similarity=0.433 Sum_probs=14.6
Q ss_pred cceeeehhhhHHHHHHHhhhhhhhhcchhh
Q 003084 792 MDSFFITFTISYVIVIFGIVVVLYVNPYWR 821 (850)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (850)
...++|+++.|++++++++++++++ |++|
T Consensus 36 ~~~I~iaiVAG~~tVILVI~i~v~v-R~CR 64 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIFIVVLV-RYCR 64 (221)
T ss_pred ceeeeeeeecchhhhHHHHHHHHHH-HHHh
Confidence 3345566666665555554444433 4343
No 107
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=28.46 E-value=25 Score=30.05 Aligned_cols=14 Identities=21% Similarity=0.067 Sum_probs=0.0
Q ss_pred hhhhhcchhhhHHH
Q 003084 812 VVLYVNPYWRRRWL 825 (850)
Q Consensus 812 ~~~~~~~~~~~~~~ 825 (850)
++++++|..|+++|
T Consensus 97 g~lv~rrcrrr~~~ 110 (129)
T PF12191_consen 97 GFLVWRRCRRREKF 110 (129)
T ss_dssp --------------
T ss_pred HHHHHhhhhccccC
Confidence 44444444444443
No 108
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=25.22 E-value=37 Score=33.80 Aligned_cols=15 Identities=33% Similarity=0.780 Sum_probs=6.7
Q ss_pred hhhhhhhhcchhhhH
Q 003084 809 GIVVVLYVNPYWRRR 823 (850)
Q Consensus 809 ~~~~~~~~~~~~~~~ 823 (850)
||++++|++.|.||+
T Consensus 273 vvliiLYiWlyrrRK 287 (295)
T TIGR01478 273 VVLIILYIWLYRRRK 287 (295)
T ss_pred HHHHHHHHHHHHhhc
Confidence 334444554444443
No 109
>PRK00523 hypothetical protein; Provisional
Probab=23.59 E-value=61 Score=24.84 Aligned_cols=18 Identities=11% Similarity=0.209 Sum_probs=9.0
Q ss_pred hhhhhhhhcchhhhHHHH
Q 003084 809 GIVVVLYVNPYWRRRWLY 826 (850)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~ 826 (850)
.+++-+|+-|++..+|+.
T Consensus 18 G~~~Gffiark~~~k~l~ 35 (72)
T PRK00523 18 GGIIGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555555555553
No 110
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=22.87 E-value=41 Score=23.61 Aligned_cols=13 Identities=38% Similarity=0.728 Sum_probs=10.2
Q ss_pred CCCCCCCCCCCCC
Q 003084 759 NPFLCGLPLPICR 771 (850)
Q Consensus 759 n~~~c~~~l~~c~ 771 (850)
|||.|+|.+.|..
T Consensus 1 NP~~CdC~l~~~~ 13 (51)
T smart00082 1 NPFICDCELRWLL 13 (51)
T ss_pred CCccCcCCchHHH
Confidence 8999999876433
No 111
>PRK01844 hypothetical protein; Provisional
Probab=22.37 E-value=70 Score=24.54 Aligned_cols=16 Identities=6% Similarity=0.370 Sum_probs=7.9
Q ss_pred hhhhhhhcchhhhHHH
Q 003084 810 IVVVLYVNPYWRRRWL 825 (850)
Q Consensus 810 ~~~~~~~~~~~~~~~~ 825 (850)
+++-+|+-|++..+|+
T Consensus 18 ~~~Gff~ark~~~k~l 33 (72)
T PRK01844 18 VALGFFIARKYMMNYL 33 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334455555555554
No 112
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=21.47 E-value=98 Score=25.48 Aligned_cols=8 Identities=13% Similarity=0.422 Sum_probs=3.0
Q ss_pred hHHHHHHH
Q 003084 801 ISYVIVIF 808 (850)
Q Consensus 801 ~~~~~~~~ 808 (850)
+|+|++++
T Consensus 21 VGVv~~al 28 (102)
T PF15176_consen 21 VGVVVTAL 28 (102)
T ss_pred HHHHHHHH
Confidence 33333333
Done!