Query 003084
Match_columns 850
No_of_seqs 627 out of 5260
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 12:43:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003084.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003084hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.9E-74 6.5E-79 683.7 48.2 670 31-774 50-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 8.4E-69 2.9E-73 635.4 45.6 660 2-739 74-742 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 2.2E-58 7.4E-63 542.5 53.2 599 34-742 7-626 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 2.8E-58 9.6E-63 541.6 51.4 598 84-774 7-635 (680)
5 3j0a_A TOLL-like receptor 5; m 100.0 2.2E-53 7.4E-58 508.8 45.6 555 107-776 23-594 (844)
6 3t6q_A CD180 antigen; protein- 100.0 6.2E-52 2.1E-56 481.0 48.3 517 109-766 34-564 (606)
7 3t6q_A CD180 antigen; protein- 100.0 1.3E-51 4.4E-56 478.3 48.2 523 57-743 34-565 (606)
8 3j0a_A TOLL-like receptor 5; m 100.0 7.2E-52 2.5E-56 495.6 43.5 531 111-768 7-566 (844)
9 3vq2_A TLR4, TOLL-like recepto 100.0 4.5E-51 1.5E-55 473.7 43.5 365 290-743 185-563 (606)
10 3vq2_A TLR4, TOLL-like recepto 100.0 4.9E-51 1.7E-55 473.4 38.9 533 110-768 13-564 (606)
11 2z63_A TOLL-like receptor 4, v 100.0 5E-46 1.7E-50 428.6 38.2 272 411-743 260-536 (570)
12 2z63_A TOLL-like receptor 4, v 100.0 1.1E-44 3.9E-49 417.3 35.1 468 237-770 29-539 (570)
13 2z81_A CD282 antigen, TOLL-lik 100.0 2.2E-44 7.6E-49 412.5 36.3 491 112-743 9-515 (549)
14 2z81_A CD282 antigen, TOLL-lik 100.0 5.1E-44 1.8E-48 409.5 33.8 487 140-766 9-514 (549)
15 4eco_A Uncharacterized protein 100.0 2E-45 6.8E-50 424.9 20.1 384 296-766 193-630 (636)
16 4g8a_A TOLL-like receptor 4; l 100.0 1.8E-42 6.3E-47 404.9 39.7 520 109-768 53-586 (635)
17 2z7x_B TOLL-like receptor 1, v 100.0 5.9E-44 2E-48 405.6 24.1 464 111-743 3-486 (520)
18 4eco_A Uncharacterized protein 100.0 1.9E-44 6.5E-49 416.8 18.4 364 344-764 192-602 (636)
19 4ecn_A Leucine-rich repeat pro 100.0 6.1E-43 2.1E-47 409.1 30.0 380 320-766 435-870 (876)
20 4g8a_A TOLL-like receptor 4; l 100.0 4.8E-41 1.7E-45 392.9 42.2 539 59-743 34-585 (635)
21 2z7x_B TOLL-like receptor 1, v 100.0 9.8E-43 3.4E-47 395.6 24.6 440 261-770 21-489 (520)
22 4ecn_A Leucine-rich repeat pro 100.0 5.3E-42 1.8E-46 401.2 29.8 378 271-738 435-864 (876)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.2E-40 4E-45 381.5 25.6 462 107-743 30-515 (562)
24 3v47_A TOLL-like receptor 5B a 100.0 1.8E-39 6.3E-44 362.4 30.8 372 313-743 13-413 (455)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-38 5E-43 364.1 27.8 463 55-592 30-513 (562)
26 3v47_A TOLL-like receptor 5B a 100.0 4.2E-38 1.4E-42 351.4 30.8 373 337-767 12-413 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 5E-37 1.7E-41 338.6 24.4 161 310-494 111-271 (454)
28 2id5_A Lingo-1, leucine rich r 100.0 2.6E-36 9E-41 338.6 25.1 347 339-767 15-361 (477)
29 1jl5_A Outer protein YOPM; leu 100.0 1.2E-35 4.1E-40 327.6 29.8 402 237-763 12-430 (454)
30 1o6v_A Internalin A; bacterial 100.0 1.7E-34 5.9E-39 322.0 33.5 346 285-740 45-390 (466)
31 3o6n_A APL1; leucine-rich repe 100.0 1E-34 3.5E-39 316.4 27.3 335 358-766 44-378 (390)
32 1o6v_A Internalin A; bacterial 100.0 6.3E-34 2.1E-38 317.4 33.6 346 259-715 44-389 (466)
33 2id5_A Lingo-1, leucine rich r 100.0 1.2E-34 4.2E-39 325.0 27.5 320 314-715 15-334 (477)
34 3oja_B Anopheles plasmodium-re 100.0 7.5E-34 2.6E-38 326.5 27.1 335 358-766 50-384 (597)
35 3bz5_A Internalin-J, INLJ; leu 100.0 1.2E-33 4.3E-38 311.7 27.5 358 256-745 37-394 (457)
36 3bz5_A Internalin-J, INLJ; leu 100.0 3.4E-32 1.2E-36 300.2 28.4 347 305-766 37-391 (457)
37 1ogq_A PGIP-2, polygalacturona 100.0 3.7E-33 1.3E-37 293.0 18.9 260 432-771 50-313 (313)
38 3o6n_A APL1; leucine-rich repe 100.0 6.9E-32 2.4E-36 294.0 29.4 312 308-716 43-354 (390)
39 4fmz_A Internalin; leucine ric 100.0 1E-31 3.5E-36 287.9 30.0 304 334-738 43-346 (347)
40 4fmz_A Internalin; leucine ric 100.0 3.3E-31 1.1E-35 284.0 30.4 307 306-714 40-346 (347)
41 3oja_B Anopheles plasmodium-re 100.0 1.9E-31 6.4E-36 306.5 27.0 314 383-768 50-364 (597)
42 1xku_A Decorin; proteoglycan, 100.0 4.3E-30 1.5E-34 272.9 30.0 291 360-736 32-330 (330)
43 2ft3_A Biglycan; proteoglycan, 100.0 3E-30 1E-34 274.2 26.5 288 360-736 34-331 (332)
44 2ft3_A Biglycan; proteoglycan, 100.0 1.2E-29 4.1E-34 269.5 28.0 251 336-598 34-286 (332)
45 1xku_A Decorin; proteoglycan, 100.0 4.2E-29 1.4E-33 265.2 29.1 251 311-597 32-284 (330)
46 1z7x_W Ribonuclease inhibitor; 100.0 3.8E-33 1.3E-37 312.0 -2.6 185 310-494 3-213 (461)
47 1ogq_A PGIP-2, polygalacturona 100.0 4.7E-31 1.6E-35 277.0 13.2 251 409-739 51-306 (313)
48 1z7x_W Ribonuclease inhibitor; 100.0 6.7E-33 2.3E-37 309.9 -3.7 309 262-590 4-355 (461)
49 2z66_A Variable lymphocyte rec 100.0 4.7E-28 1.6E-32 254.2 20.0 275 411-766 10-291 (306)
50 3zyj_A Leucine-rich repeat-con 100.0 2.4E-27 8.1E-32 262.1 26.2 252 410-743 45-297 (440)
51 3zyi_A Leucine-rich repeat-con 100.0 3.2E-27 1.1E-31 262.1 25.9 252 410-743 56-308 (452)
52 2z80_A TOLL-like receptor 2, v 100.0 4.9E-28 1.7E-32 259.5 16.4 283 358-742 30-318 (353)
53 2z80_A TOLL-like receptor 2, v 100.0 3.9E-28 1.3E-32 260.3 15.1 257 433-766 53-318 (353)
54 2z66_A Variable lymphocyte rec 99.9 3.1E-27 1.1E-31 248.0 20.7 256 434-768 9-267 (306)
55 3zyj_A Leucine-rich repeat-con 99.9 2.2E-26 7.4E-31 254.5 26.0 227 408-713 64-291 (440)
56 3zyi_A Leucine-rich repeat-con 99.9 2.1E-26 7.3E-31 255.4 25.8 247 386-714 56-303 (452)
57 1ozn_A Reticulon 4 receptor; N 99.9 1.2E-26 4E-31 240.8 20.2 251 435-766 14-265 (285)
58 3ogk_B Coronatine-insensitive 99.9 6.7E-29 2.3E-33 286.9 3.2 431 25-490 67-548 (592)
59 1ozn_A Reticulon 4 receptor; N 99.9 2.2E-26 7.7E-31 238.6 20.3 254 411-745 14-268 (285)
60 3ogk_B Coronatine-insensitive 99.9 7.5E-29 2.6E-33 286.5 1.0 426 50-512 68-547 (592)
61 3o53_A Protein LRIM1, AGAP0063 99.9 1.5E-27 5.3E-32 251.0 6.3 246 431-743 33-281 (317)
62 4fcg_A Uncharacterized protein 99.9 1E-25 3.5E-30 237.7 18.8 235 407-738 80-314 (328)
63 4fcg_A Uncharacterized protein 99.9 2.4E-25 8.2E-30 234.8 20.0 226 383-690 80-314 (328)
64 3oja_A Leucine-rich immune mol 99.9 1.8E-26 6.3E-31 256.9 9.6 235 432-733 34-270 (487)
65 3g06_A SSPH2 (leucine-rich rep 99.9 7.6E-24 2.6E-28 240.1 29.5 67 654-725 242-308 (622)
66 3oja_A Leucine-rich immune mol 99.9 6E-26 2.1E-30 252.7 11.8 234 385-709 35-270 (487)
67 1wwl_A Monocyte differentiatio 99.9 5.5E-27 1.9E-31 246.2 2.8 247 406-739 41-310 (312)
68 3g06_A SSPH2 (leucine-rich rep 99.9 8.3E-24 2.8E-28 239.8 28.6 268 360-749 41-308 (622)
69 3o53_A Protein LRIM1, AGAP0063 99.9 7.4E-27 2.5E-31 245.8 3.1 261 433-759 11-272 (317)
70 1wwl_A Monocyte differentiatio 99.9 6.3E-26 2.2E-30 238.1 7.9 133 355-493 39-186 (312)
71 2p1m_B Transport inhibitor res 99.9 1.6E-27 5.4E-32 275.6 -5.0 426 25-488 60-539 (594)
72 2o6q_A Variable lymphocyte rec 99.9 1.5E-23 5E-28 215.2 23.5 207 481-743 17-223 (270)
73 2p1m_B Transport inhibitor res 99.9 1.2E-27 4.1E-32 276.6 -8.6 207 282-490 101-324 (594)
74 2z62_A TOLL-like receptor 4, v 99.9 7.1E-24 2.4E-28 218.6 20.3 190 523-766 47-241 (276)
75 2z62_A TOLL-like receptor 4, v 99.9 8E-24 2.7E-28 218.2 20.7 209 457-743 29-242 (276)
76 2o6q_A Variable lymphocyte rec 99.9 7E-23 2.4E-27 210.1 24.7 206 504-766 17-222 (270)
77 1p9a_G Platelet glycoprotein I 99.9 7E-23 2.4E-27 211.7 20.7 206 476-741 6-211 (290)
78 1p9a_G Platelet glycoprotein I 99.9 2E-22 6.9E-27 208.2 22.2 205 502-767 9-213 (290)
79 3rfs_A Internalin B, repeat mo 99.9 8.3E-23 2.8E-27 209.7 16.8 224 435-748 22-245 (272)
80 3m19_A Variable lymphocyte rec 99.9 1.9E-21 6.6E-26 197.0 20.2 162 528-742 35-196 (251)
81 3rfs_A Internalin B, repeat mo 99.9 7.1E-22 2.4E-26 202.7 17.0 203 482-743 21-223 (272)
82 3m19_A Variable lymphocyte rec 99.9 4.8E-21 1.6E-25 194.0 20.2 183 528-766 14-197 (251)
83 3goz_A Leucine-rich repeat-con 99.9 7.3E-23 2.5E-27 219.7 3.2 67 654-720 226-303 (362)
84 2xwt_C Thyrotropin receptor; s 99.9 3.3E-21 1.1E-25 193.9 14.5 78 654-735 156-236 (239)
85 3goz_A Leucine-rich repeat-con 99.9 1.4E-22 4.7E-27 217.5 4.4 261 413-742 3-301 (362)
86 4glp_A Monocyte differentiatio 99.8 3.2E-21 1.1E-25 202.1 12.6 232 433-739 65-308 (310)
87 2xwt_C Thyrotropin receptor; s 99.8 6.8E-21 2.3E-25 191.5 14.5 198 502-759 30-236 (239)
88 2ca6_A RAN GTPase-activating p 99.8 8.7E-23 3E-27 221.6 -0.1 247 423-742 23-320 (386)
89 4glp_A Monocyte differentiatio 99.8 7.5E-21 2.6E-25 199.3 12.8 56 654-714 252-307 (310)
90 1h6u_A Internalin H; cell adhe 99.8 3.2E-20 1.1E-24 193.9 17.5 196 452-740 37-232 (308)
91 2ast_B S-phase kinase-associat 99.8 9.3E-22 3.2E-26 209.5 5.2 233 432-746 70-314 (336)
92 1h6u_A Internalin H; cell adhe 99.8 6.4E-20 2.2E-24 191.5 18.2 193 430-715 39-231 (308)
93 2ast_B S-phase kinase-associat 99.8 8.3E-22 2.8E-26 209.8 3.8 101 361-466 49-152 (336)
94 2ca6_A RAN GTPase-activating p 99.8 3.2E-22 1.1E-26 217.1 -0.9 65 654-718 245-320 (386)
95 4ay9_X Follicle-stimulating ho 99.8 3.9E-19 1.3E-23 189.5 19.7 244 313-587 12-257 (350)
96 2o6s_A Variable lymphocyte rec 99.8 3E-19 1E-23 175.2 16.0 161 527-747 27-187 (208)
97 2v9t_B SLIT homolog 2 protein 99.8 2.9E-19 1E-23 176.3 15.3 156 531-742 14-169 (220)
98 4ay9_X Follicle-stimulating ho 99.8 5.9E-19 2E-23 188.2 18.6 206 362-596 12-222 (350)
99 2xot_A Amphoterin-induced prot 99.8 2.1E-19 7.3E-24 192.3 13.8 180 506-742 21-206 (361)
100 3cvr_A Invasion plasmid antige 99.8 3.4E-19 1.2E-23 199.3 15.6 83 654-745 161-250 (571)
101 2o6s_A Variable lymphocyte rec 99.8 7.8E-19 2.7E-23 172.3 16.0 163 503-726 28-190 (208)
102 2v70_A SLIT-2, SLIT homolog 2 99.8 6.5E-19 2.2E-23 173.8 14.9 157 531-743 14-171 (220)
103 2v70_A SLIT-2, SLIT homolog 2 99.8 1.1E-18 3.8E-23 172.2 16.2 113 654-766 58-170 (220)
104 2v9t_B SLIT homolog 2 protein 99.8 1.5E-18 5.3E-23 171.1 16.4 113 654-766 57-169 (220)
105 3e6j_A Variable lymphocyte rec 99.8 5.5E-18 1.9E-22 168.5 17.0 157 529-742 20-176 (229)
106 2xot_A Amphoterin-induced prot 99.8 2.4E-18 8.2E-23 184.1 15.0 112 484-598 22-134 (361)
107 3e6j_A Variable lymphocyte rec 99.8 6.9E-18 2.4E-22 167.7 17.2 155 504-716 20-174 (229)
108 3cvr_A Invasion plasmid antige 99.8 1.1E-17 3.9E-22 187.0 18.6 189 433-726 60-255 (571)
109 1h6t_A Internalin B; cell adhe 99.7 2.5E-17 8.5E-22 170.2 17.4 153 523-740 63-215 (291)
110 1m9s_A Internalin B; cell inva 99.7 7.1E-17 2.4E-21 182.8 18.2 80 654-739 132-211 (605)
111 1h6t_A Internalin B; cell adhe 99.7 2.7E-17 9.1E-22 170.0 12.7 185 438-715 30-214 (291)
112 1m9s_A Internalin B; cell inva 99.7 8.8E-17 3E-21 182.1 16.2 166 388-591 25-190 (605)
113 1w8a_A SLIT protein; signaling 99.7 2.6E-16 8.9E-21 151.5 16.7 111 654-766 55-166 (192)
114 1xeu_A Internalin C; cellular 99.7 5E-17 1.7E-21 165.1 12.0 168 505-741 21-188 (263)
115 4ezg_A Putative uncharacterize 99.7 9.2E-17 3.1E-21 155.7 12.6 154 525-739 41-195 (197)
116 3sb4_A Hypothetical leucine ri 99.7 4E-17 1.4E-21 172.4 10.0 221 431-731 100-327 (329)
117 3sb4_A Hypothetical leucine ri 99.7 3.4E-17 1.2E-21 172.9 9.0 259 407-754 48-326 (329)
118 4fs7_A Uncharacterized protein 99.7 1.2E-15 4.1E-20 165.3 20.9 328 329-729 65-392 (394)
119 4fdw_A Leucine rich hypothetic 99.7 1.9E-15 6.5E-20 162.5 21.5 248 425-737 129-382 (401)
120 1w8a_A SLIT protein; signaling 99.7 3.5E-16 1.2E-20 150.7 13.0 115 654-768 30-145 (192)
121 2wfh_A SLIT homolog 2 protein 99.7 4.3E-16 1.5E-20 149.9 13.5 114 654-768 32-145 (193)
122 4fdw_A Leucine rich hypothetic 99.7 3E-15 1E-19 161.0 21.5 265 359-714 113-383 (401)
123 4ezg_A Putative uncharacterize 99.7 5E-16 1.7E-20 150.5 12.9 153 28-198 41-194 (197)
124 4fs7_A Uncharacterized protein 99.6 5.5E-15 1.9E-19 160.1 20.9 332 277-706 62-393 (394)
125 1dce_A Protein (RAB geranylger 99.6 9.7E-19 3.3E-23 197.0 -9.2 77 654-732 487-567 (567)
126 1xeu_A Internalin C; cellular 99.6 4.2E-16 1.4E-20 158.3 9.8 169 410-593 21-189 (263)
127 1dce_A Protein (RAB geranylger 99.6 3.4E-18 1.2E-22 192.6 -8.6 88 653-743 463-551 (567)
128 2ell_A Acidic leucine-rich nuc 99.6 2.6E-15 8.8E-20 141.4 11.6 86 654-739 72-161 (168)
129 2wfh_A SLIT homolog 2 protein 99.6 6.5E-15 2.2E-19 141.6 14.0 89 654-742 55-143 (193)
130 2o6r_A Variable lymphocyte rec 99.6 8.2E-15 2.8E-19 139.2 14.1 90 654-743 53-142 (177)
131 2ell_A Acidic leucine-rich nuc 99.6 2.3E-15 7.8E-20 141.8 9.9 138 526-719 22-164 (168)
132 2je0_A Acidic leucine-rich nuc 99.6 3.3E-15 1.1E-19 137.5 10.2 81 654-734 65-149 (149)
133 2o6r_A Variable lymphocyte rec 99.6 1.3E-14 4.5E-19 137.8 13.6 113 654-766 29-141 (177)
134 4b8c_D Glucose-repressible alc 99.6 7.4E-16 2.5E-20 179.3 3.7 122 472-597 216-337 (727)
135 4b8c_D Glucose-repressible alc 99.6 1.2E-15 4.1E-20 177.6 5.3 191 480-735 173-369 (727)
136 2je0_A Acidic leucine-rich nuc 99.5 4.9E-15 1.7E-19 136.3 7.4 128 528-710 17-149 (149)
137 4gt6_A Cell surface protein; l 99.5 1.3E-12 4.4E-17 141.5 24.3 309 350-736 78-389 (394)
138 1a9n_A U2A', U2A'; complex (nu 99.5 6.7E-14 2.3E-18 132.7 10.2 83 654-738 65-153 (176)
139 3g39_A Variable lymphocyte rec 99.5 1.1E-13 3.9E-18 129.9 11.5 110 654-766 10-119 (170)
140 4gt6_A Cell surface protein; l 99.5 2.8E-12 9.6E-17 138.8 24.1 136 519-714 256-391 (394)
141 1a9n_A U2A', U2A'; complex (nu 99.5 5.6E-14 1.9E-18 133.2 8.0 135 523-715 14-154 (176)
142 3g39_A Variable lymphocyte rec 99.5 3.4E-13 1.2E-17 126.6 12.4 90 654-743 31-120 (170)
143 2r9u_A Variable lymphocyte rec 99.4 3.9E-13 1.3E-17 126.6 11.6 108 656-766 15-122 (174)
144 1ds9_A Outer arm dynein; leuci 99.4 1.6E-15 5.5E-20 147.0 -6.8 154 525-738 15-185 (198)
145 2r9u_A Variable lymphocyte rec 99.4 1.1E-12 3.8E-17 123.4 12.3 90 654-743 34-123 (174)
146 1ds9_A Outer arm dynein; leuci 99.3 1.2E-14 4E-19 140.9 -7.7 138 548-743 14-158 (198)
147 2ifg_A High affinity nerve gro 99.3 5.6E-12 1.9E-16 134.1 9.4 112 654-766 32-145 (347)
148 2ifg_A High affinity nerve gro 99.3 9.8E-12 3.3E-16 132.3 11.1 109 656-767 11-121 (347)
149 4h09_A Hypothetical leucine ri 99.3 3.4E-10 1.2E-14 121.9 22.8 311 334-724 45-355 (379)
150 4h09_A Hypothetical leucine ri 99.3 5.5E-10 1.9E-14 120.2 24.3 305 306-703 42-358 (379)
151 3un9_A NLR family member X1; l 99.2 3.9E-13 1.3E-17 143.0 -1.4 166 30-198 71-252 (372)
152 3un9_A NLR family member X1; l 99.2 5.7E-13 1.9E-17 141.8 -3.0 171 54-227 70-256 (372)
153 2ra8_A Uncharacterized protein 98.7 7.9E-09 2.7E-13 108.7 6.8 185 5-198 107-320 (362)
154 2ra8_A Uncharacterized protein 98.7 8.6E-09 3E-13 108.4 4.6 163 523-736 167-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.5 4.2E-08 1.4E-12 93.0 2.0 93 77-172 61-163 (185)
156 1io0_A Tropomodulin; LRR prote 98.4 3.8E-08 1.3E-12 93.2 0.9 122 24-149 29-164 (185)
157 3e4g_A ATP synthase subunit S, 98.3 2E-07 6.8E-12 85.4 1.6 83 32-119 62-150 (176)
158 3rw6_A Nuclear RNA export fact 98.2 9.6E-07 3.3E-11 87.7 5.9 78 652-731 169-257 (267)
159 3rw6_A Nuclear RNA export fact 98.0 1.4E-06 4.9E-11 86.4 2.1 84 658-743 148-238 (267)
160 3e4g_A ATP synthase subunit S, 97.8 5.9E-06 2E-10 75.7 2.8 85 56-147 61-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.4 5.1E-05 1.7E-09 70.9 1.9 67 78-146 67-136 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 4.5E-05 1.5E-09 71.3 1.0 88 28-118 38-136 (197)
163 3rfe_A Platelet glycoprotein I 97.3 0.00028 9.5E-09 61.7 5.3 61 680-742 11-72 (130)
164 3rfe_A Platelet glycoprotein I 97.1 0.00093 3.2E-08 58.3 7.0 57 656-714 11-68 (130)
165 2lz0_A Uncharacterized protein 63.2 8.6 0.00029 31.0 4.5 42 151-194 11-52 (100)
166 2lz0_A Uncharacterized protein 59.0 21 0.00071 28.7 6.1 48 663-711 6-53 (100)
167 2jwa_A Receptor tyrosine-prote 29.9 32 0.0011 22.6 2.1 6 797-802 15-20 (44)
168 2k1k_A Ephrin type-A receptor 24.2 26 0.0009 22.2 1.0 11 798-808 15-25 (38)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.9e-74 Score=683.74 Aligned_cols=670 Identities=30% Similarity=0.437 Sum_probs=471.4
Q ss_pred CCCCEEEcCCCCCccc---chhhhhccCCCCcEEeCCCCcCCCcccCCcCCCCCcccEEecccCCcccccchhh--Hhhh
Q 003084 31 TNLEYLTLDDSSLHIS---LLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQ--IIGE 105 (850)
Q Consensus 31 ~~L~~L~Ls~n~i~~~---~~~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~--~l~~ 105 (850)
.+++.|+|+++.+.+. .++++.+ ++.|+.++++.+.+.. .+. .++++++|++|+| ++|.+.+.++. .++.
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~-L~~L~~l~~~~~~~~~-l~~-~~~~l~~L~~L~L--s~n~l~~~~~~~~~l~~ 124 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLS-LTGLESLFLSNSHING-SVS-GFKCSASLTSLDL--SRNSLSGPVTTLTSLGS 124 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTT-CTTCCEEECTTSCEEE-CCC-CCCCCTTCCEEEC--CSSEEEEEGGGGGGGGG
T ss_pred CcEEEEECCCCCcCCccCccChhHhc-cCcccccCCcCCCcCC-Cch-hhccCCCCCEEEC--CCCcCCCcCCChHHHhC
Confidence 5788888888888776 5667888 8888888888887642 333 6888899999999 88888887777 7777
Q ss_pred cCCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCcc---ccCCCCCCEEECCCCcCcCCCCccccc
Q 003084 106 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWC---LANTTSLRILDVSFNQLTGSISSSPLV 182 (850)
Q Consensus 106 ~l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~Ls~n~i~~~i~~~~~~ 182 (850)
+++|++|++++|.+.+ .++...+.++++|++|++++|++++..+.. +.++++|++|++++|.+++.++ +.
T Consensus 125 -l~~L~~L~Ls~n~l~~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~ 197 (768)
T 3rgz_A 125 -CSGLKFLNVSSNTLDF---PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VS 197 (768)
T ss_dssp -CTTCCEEECCSSEEEC---CSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB---CT
T ss_pred -CCCCCEEECcCCccCC---cCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC---cc
Confidence 8899999999988876 455444478889999999999888877776 7888899999999998875433 47
Q ss_pred CCCCCCeEECcCCcCcCCCCcccccCCCCccEEEccCCccccccccccCCCCccceeEEEccCCCCCCcccCccccCCCC
Q 003084 183 HLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHE 262 (850)
Q Consensus 183 ~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~ 262 (850)
.+++|++|++++|.+.+..+. +.++++|+.|++++|.+.+.....+ ....+|++|++ .++.+.+.+|.. .+++
T Consensus 198 ~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l--~~l~~L~~L~L-s~n~l~~~~~~~--~l~~ 270 (768)
T 3rgz_A 198 RCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAI--STCTELKLLNI-SSNQFVGPIPPL--PLKS 270 (768)
T ss_dssp TCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHT--TTCSSCCEEEC-CSSCCEESCCCC--CCTT
T ss_pred cCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHHH--hcCCCCCEEEC-CCCcccCccCcc--ccCC
Confidence 888899999999988865553 7788888888888887764433222 23335666666 333444444443 5666
Q ss_pred ccEEEccCCcccccCchhhhhcCCCCcEEEccCCcCcCcCccCcCCCCCccEEEccCCcCCcCCChhhhhcCCCCcEEEc
Q 003084 263 LKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNI 342 (850)
Q Consensus 263 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 342 (850)
|++|++++|.+.+.+|..+...+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|...+..+++|++|++
T Consensus 271 L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~L 350 (768)
T 3rgz_A 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350 (768)
T ss_dssp CCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEEC
T ss_pred CCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeC
Confidence 77777777766666666655445667777777776666666666666777777777776666666665555666777777
Q ss_pred cCCcCcccCcccccCCC-CCCEEEccCCcCCCCcchHHhh-cCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcC
Q 003084 343 SMNALDGSIPSSFGNVI-FLQFLDLSNNKLTGEIPDHLAM-CCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF 420 (850)
Q Consensus 343 ~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 420 (850)
++|.+++.+|..+..++ +|++|++++|.+++.+|..+.. .+++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus 351 s~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 430 (768)
T 3rgz_A 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430 (768)
T ss_dssp CSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEE
T ss_pred cCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcc
Confidence 77766666666666665 6677777776666555554432 145666666666666666666666666666666666666
Q ss_pred cccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCc
Q 003084 421 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCF 500 (850)
Q Consensus 421 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~ 500 (850)
.+..|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|++++..|..+..+++|+.|++++|++.+.+|..+
T Consensus 431 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 510 (768)
T 3rgz_A 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510 (768)
T ss_dssp ESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred cCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666665555543
Q ss_pred C-CCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCC-----------------
Q 003084 501 Y-PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHN----------------- 562 (850)
Q Consensus 501 ~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n----------------- 562 (850)
. +++|+.|++++|.+.+.+|. .+..+++|+.|++++|++++.+|..+.....+..+++..+
T Consensus 511 ~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (768)
T 3rgz_A 511 GRLENLAILKLSNNSFSGNIPA-ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 589 (768)
T ss_dssp GGCTTCCEEECCSSCCEEECCG-GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCS
T ss_pred hcCCCCCEEECCCCcccCcCCH-HHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccc
Confidence 3 44555555555555544444 4455555555555555555555544444333333222211
Q ss_pred -----cCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhh
Q 003084 563 -----NLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFE 637 (850)
Q Consensus 563 -----~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (850)
.+.+..+..+..++.++.++++.|.+.|..|..+..
T Consensus 590 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~--------------------------------------- 630 (768)
T 3rgz_A 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN--------------------------------------- 630 (768)
T ss_dssp SEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSS---------------------------------------
T ss_pred cccccccccccchhhhccccccccccccceecccCchhhhc---------------------------------------
Confidence 011122222223333333344444444444433332
Q ss_pred hccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccC
Q 003084 638 FTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 717 (850)
Q Consensus 638 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 717 (850)
+++|+.|||++|++++.+|..++++++|+.|+|++|++++.+|..|+.+++|+.|||++|+++|.+
T Consensus 631 --------------l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~i 696 (768)
T 3rgz_A 631 --------------NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696 (768)
T ss_dssp --------------SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECC
T ss_pred --------------cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcC
Confidence 458999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhcCCCCCEEEccCCcCcCCCCCCccccCCCCccccCCCCCCCCCCCCCCCCCC
Q 003084 718 PRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLA 774 (850)
Q Consensus 718 p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~~c~~~~ 774 (850)
|..+..+++|++||+++|+++|.+|.. +++.++...++.|||.+||.|+..|....
T Consensus 697 p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~ 752 (768)
T 3rgz_A 697 PQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRCDPSN 752 (768)
T ss_dssp CGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEESTTSCCCCSCC
T ss_pred ChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCCCCcCCCCCc
Confidence 999999999999999999999999995 89999999999999999999988887543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8.4e-69 Score=635.42 Aligned_cols=660 Identities=28% Similarity=0.379 Sum_probs=400.1
Q ss_pred CCCCCCCEEeCCCCcCCccccCccccCCCCCCCEEEcCCCCCcccchh--hhhccCCCCcEEeCCCCcCCCcccCCcCCC
Q 003084 2 GSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQ--SIGSIFPSLKNLSMSGCEVNGVLSGQGFPH 79 (850)
Q Consensus 2 ~~l~~L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~--~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~~ 79 (850)
+++++|+.++++.+.+... +..++++++|++|+|++|.+.+..+. .+++ +++|++|++++|.+.+..+...+.+
T Consensus 74 ~~L~~L~~l~~~~~~~~~l---~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~ 149 (768)
T 3rgz_A 74 LSLTGLESLFLSNSHINGS---VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGS-CSGLKFLNVSSNTLDFPGKVSGGLK 149 (768)
T ss_dssp TTCTTCCEEECTTSCEEEC---CCCCCCCTTCCEEECCSSEEEEEGGGGGGGGG-CTTCCEEECCSSEEECCSSCCSCCC
T ss_pred hccCcccccCCcCCCcCCC---chhhccCCCCCEEECCCCcCCCcCCChHHHhC-CCCCCEEECcCCccCCcCCHHHhcc
Confidence 3445555555555443321 35566666666666666666554444 5566 6666666666666655555433356
Q ss_pred CCcccEEecccCCcccccchhhH---hhhcCCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCccc
Q 003084 80 FKSLEHLDMRFARIALNTSFLQI---IGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCL 156 (850)
Q Consensus 80 l~~L~~L~L~~~~~~~~~~~~~~---l~~~l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 156 (850)
+++|++|++ ++|.+.+..+.. +.. +++|++|++++|.+.+ .+ .+..+++|++|++++|++.+..|. +
T Consensus 150 l~~L~~L~L--s~n~l~~~~~~~~~~~~~-l~~L~~L~Ls~n~l~~---~~---~~~~l~~L~~L~Ls~n~l~~~~~~-l 219 (768)
T 3rgz_A 150 LNSLEVLDL--SANSISGANVVGWVLSDG-CGELKHLAISGNKISG---DV---DVSRCVNLEFLDVSSNNFSTGIPF-L 219 (768)
T ss_dssp CTTCSEEEC--CSSCCEEETHHHHHHTTC-CTTCCEEECCSSEEES---CC---BCTTCTTCCEEECCSSCCCSCCCB-C
T ss_pred CCCCCEEEC--CCCccCCcCChhhhhhcc-CCCCCEEECCCCcccc---cC---CcccCCcCCEEECcCCcCCCCCcc-c
Confidence 666666666 556665555544 334 6666666666666554 11 225566666666666666655554 6
Q ss_pred cCCCCCCEEECCCCcCcCCCCcccccCCCCCCeEECcCCcCcCCCCcccccCCCCccEEEccCCccccccccccCCCCcc
Q 003084 157 ANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKF 236 (850)
Q Consensus 157 ~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 236 (850)
+++++|++|++++|.+++.+|. .+..+++|++|++++|.+.+..+.. .+++|+.|++++|.+.+....... ..+.
T Consensus 220 ~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~-~~~~ 294 (768)
T 3rgz_A 220 GDCSALQHLDISGNKLSGDFSR-AISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLS-GACD 294 (768)
T ss_dssp TTCCSCCEEECCSSCCCSCHHH-HTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSC-TTCT
T ss_pred ccCCCCCEEECcCCcCCCcccH-HHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHH-hhcC
Confidence 6666666666666666655554 5666666666666666665443322 456666666666665532222111 0113
Q ss_pred ceeEEEccCCCCCCcccCccccCCCCccEEEccCCcccccCchhhhhcCCCCcEEEccCCcCcCcCccCcCCCC-CccEE
Q 003084 237 QLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHK-RLRFL 315 (850)
Q Consensus 237 ~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~-~L~~L 315 (850)
+|++|++ .++.+.+..|..+..+++|++|++++|.+.+.+|...+..+++|++|++++|.+.+..|..+..++ +|+.|
T Consensus 295 ~L~~L~L-s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L 373 (768)
T 3rgz_A 295 TLTGLDL-SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373 (768)
T ss_dssp TCSEEEC-CSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEE
T ss_pred cCCEEEC-cCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEE
Confidence 5556666 333444455555555556666666665555555555445555566666665555555555555554 55566
Q ss_pred EccCCcCCcCCChhhhhc-CCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCC
Q 003084 316 DVSNNNFQGHIPVEIGDI-LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNN 394 (850)
Q Consensus 316 ~Ls~n~l~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n 394 (850)
++++|.+++.+|..+... +++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+. .+++|++|++++|
T Consensus 374 ~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~n 452 (768)
T 3rgz_A 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLN 452 (768)
T ss_dssp ECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG-GCTTCCEEECCSS
T ss_pred EccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHh-cCCCCCEEECCCC
Confidence 666555555444443321 34555566665555555555555555566666655555544444433 3555556666555
Q ss_pred ccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcch
Q 003084 395 SLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPV 474 (850)
Q Consensus 395 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 474 (850)
.+.+..|..+..+++|++|++++|++.+..|..+..+++|++|++++|++++.+|.+++.+++|++|++++|++.+.+|.
T Consensus 453 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 532 (768)
T 3rgz_A 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG
T ss_pred cccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH
Confidence 55555555555555555666655555555555555555555666655555555555555555555556555555555555
Q ss_pred hccCCCCCCEEeccCCcCCCCCCCCcC-CCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCC
Q 003084 475 EFCRLDSLQILDISDNNISGSLPSCFY-PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ 553 (850)
Q Consensus 475 ~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 553 (850)
.+..+++|+.|++++|++.+.+|..+. ...+..+.+....-...+...............+ .+.+..+..+..++.
T Consensus 533 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~ 609 (768)
T 3rgz_A 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL---EFQGIRSEQLNRLST 609 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE---ECTTCCGGGGGGGGG
T ss_pred HHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccc---ccccccchhhhcccc
Confidence 555555555555555555555554332 1111111111100000000000000000000000 233455666777888
Q ss_pred CCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhh
Q 003084 554 LSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKIL 633 (850)
Q Consensus 554 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (850)
++.+++..|.+.+..|..+..+++|+.|++++|+++|.+|..+..+.
T Consensus 610 ~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~--------------------------------- 656 (768)
T 3rgz_A 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP--------------------------------- 656 (768)
T ss_dssp TCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCT---------------------------------
T ss_pred ccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccc---------------------------------
Confidence 88899999999999999999999999999999999999998887755
Q ss_pred hhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcC
Q 003084 634 EIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL 713 (850)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 713 (850)
.|+.|+|++|++++.+|..|+++++|+.|||++|++++.+|..++.+++|+.||+++|++
T Consensus 657 --------------------~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 657 --------------------YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp --------------------TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred --------------------cCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhhcCCCCCEEEccCCc-CcC
Q 003084 714 SGKIPRQLVDLNTLAIFIVAYNN-LSG 739 (850)
Q Consensus 714 ~~~~p~~l~~l~~L~~L~l~~N~-l~~ 739 (850)
+|.+|.. ..+..+....+.+|+ ++|
T Consensus 717 ~g~iP~~-~~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 717 SGPIPEM-GQFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp EEECCSS-SSGGGSCGGGGCSCTEEES
T ss_pred cccCCCc-hhhccCCHHHhcCCchhcC
Confidence 9999975 344555566677886 444
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.2e-58 Score=542.49 Aligned_cols=599 Identities=23% Similarity=0.251 Sum_probs=413.2
Q ss_pred CEEEcCCCCCcccchhhhhccCCCCcEEeCCCCcCCCcccCCcCCCCCcccEEecccCCcccccchhhHhhhcCCCCcEE
Q 003084 34 EYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYL 113 (850)
Q Consensus 34 ~~L~Ls~n~i~~~~~~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L 113 (850)
+.++.++++++.. +..+ .+++++|++++|.+.+..+. .|.++++|++|++ ++|.+.+..+..+.. +++|++|
T Consensus 7 ~~~~cs~~~L~~i-p~~~---~~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L--s~n~l~~~~~~~~~~-l~~L~~L 78 (680)
T 1ziw_A 7 EVADCSHLKLTQV-PDDL---PTNITVLNLTHNQLRRLPAA-NFTRYSQLTSLDV--GFNTISKLEPELCQK-LPMLKVL 78 (680)
T ss_dssp SEEECCSSCCSSC-CSCS---CTTCSEEECCSSCCCCCCGG-GGGGGTTCSEEEC--CSSCCCCCCTTHHHH-CTTCCEE
T ss_pred CeeECCCCCcccc-cccc---CCCCcEEECCCCCCCCcCHH-HHhCCCcCcEEEC--CCCccCccCHHHHhc-ccCcCEE
Confidence 5688888887654 4333 47899999999998865543 7899999999999 888888888888888 9999999
Q ss_pred EccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCCCCeEECc
Q 003084 114 SLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLS 193 (850)
Q Consensus 114 ~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~ 193 (850)
++++|.+.+ +++..|.++++|++|++++|++.+..|.+|+++++|++|++++|.+++..+. .+.++++|++|+++
T Consensus 79 ~L~~n~l~~----l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~ 153 (680)
T 1ziw_A 79 NLQHNELSQ----LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLS 153 (680)
T ss_dssp ECCSSCCCC----CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECC
T ss_pred ECCCCccCc----cChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCch-hhcccccCCEEEcc
Confidence 999999875 6766788999999999999999888778899999999999999998854444 78889999999999
Q ss_pred CCcCcCCCCcccc--cCCCCccEEEccCCccccccccccCCCCccceeEEEccCCCCCCcccCccccCCCCccEEEccCC
Q 003084 194 NNHFRIPVSLEPL--FNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHI 271 (850)
Q Consensus 194 ~n~~~~~~~~~~l--~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~l~~~ 271 (850)
+|.+++..+ ..+ ..+++|+.|++++|.+.+ ..|..+..+++|+.+++.++
T Consensus 154 ~n~l~~~~~-~~~~~~~~~~L~~L~L~~n~l~~---------------------------~~~~~~~~l~~L~~L~l~~~ 205 (680)
T 1ziw_A 154 NNKIQALKS-EELDIFANSSLKKLELSSNQIKE---------------------------FSPGCFHAIGRLFGLFLNNV 205 (680)
T ss_dssp SSCCCCBCH-HHHGGGTTCEESEEECTTCCCCC---------------------------BCTTGGGGSSEECEEECTTC
T ss_pred CCcccccCH-HHhhccccccccEEECCCCcccc---------------------------cChhhhhhhhhhhhhhcccc
Confidence 998875332 222 244666666666665543 23445556667777777776
Q ss_pred cccccCchhhh--hcCCCCcEEEccCCcCcCcCccCcCCCCC--ccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcC
Q 003084 272 KMIGEFPNWLL--ENNTKLEFLYLVNDSLAGPFRLPIHSHKR--LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNAL 347 (850)
Q Consensus 272 ~~~~~~~~~~~--~~~~~L~~L~L~~~~~~~~~~~~~~~~~~--L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 347 (850)
.+.+.....+. -..++|+.|++++|.+.+..+..+..++. |+.|++++|.+++..+ ..+..+++|++|++++|.+
T Consensus 206 ~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l 284 (680)
T 1ziw_A 206 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN-DSFAWLPQLEYFFLEYNNI 284 (680)
T ss_dssp CCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSCCB
T ss_pred ccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCc-ccccCcccccEeeCCCCcc
Confidence 65543322221 13477888888888888777777776654 8888888888874433 3344577888888888888
Q ss_pred cccCcccccCCCCCCEEEccCCcCCCCc--------chHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCc
Q 003084 348 DGSIPSSFGNVIFLQFLDLSNNKLTGEI--------PDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNH 419 (850)
Q Consensus 348 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 419 (850)
++..|..+.++++|++|++++|...+.+ +...+..+++|++|++++|.+.+..+..|.++++|++|++++|.
T Consensus 285 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp SEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred CccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence 8777778888888888888876544322 11223334445555555554444444444444444444444443
Q ss_pred Ccc--cCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCC
Q 003084 420 FVG--EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLP 497 (850)
Q Consensus 420 l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 497 (850)
+.. .....+..+ ..++|+.|++++|++++..+..|..+++|+.|++++|.+.+.++
T Consensus 365 ~~~~~l~~~~f~~~----------------------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 422 (680)
T 1ziw_A 365 TSLRTLTNETFVSL----------------------AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422 (680)
T ss_dssp SCCCEECTTTTGGG----------------------TTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECC
T ss_pred hhhhhcchhhhccc----------------------ccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccC
Confidence 221 111111111 11345555555555554444555555555555555555543333
Q ss_pred C-Cc-CCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCC--CCcCccccCCCCCCEEECcCCcCccCCchhcc
Q 003084 498 S-CF-YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN--GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC 573 (850)
Q Consensus 498 ~-~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 573 (850)
. .+ .+++|+.|++++|.+.+..+ ..|..+++|+.|++++|.+. +..|..|.++++|+.|++++|++++..+..+.
T Consensus 423 ~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 501 (680)
T 1ziw_A 423 GQEWRGLENIFEIYLSYNKYLQLTR-NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501 (680)
T ss_dssp SGGGTTCTTCCEEECCSCSEEECCT-TTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cccccCcccccEEecCCCCcceeCh-hhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhc
Confidence 1 11 13445555555554433333 37778888999999988876 45778888899999999999999887777888
Q ss_pred CCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhc
Q 003084 574 RLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLS 653 (850)
Q Consensus 574 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 653 (850)
++++|++|++++|++++..+..+..... .....++
T Consensus 502 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~---------------------------------------------~~~~~l~ 536 (680)
T 1ziw_A 502 GLEKLEILDLQHNNLARLWKHANPGGPI---------------------------------------------YFLKGLS 536 (680)
T ss_dssp TCTTCCEEECCSSCCGGGGSTTSTTSCC---------------------------------------------CTTTTCT
T ss_pred cccccCEEeCCCCCccccchhhccCCcc---------------------------------------------hhhcCCC
Confidence 8999999999999887664433221100 0001245
Q ss_pred cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhh-cCCCCCEEEc
Q 003084 654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLV-DLNTLAIFIV 732 (850)
Q Consensus 654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~l 732 (850)
+|++|+|++|+++.+.+..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++++..|..+. .+++|+.+++
T Consensus 537 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l 616 (680)
T 1ziw_A 537 HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDM 616 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEEC
T ss_pred CCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEc
Confidence 788999999988865556788889999999999999877777788889999999999999887777777 7888889999
Q ss_pred cCCcCcCCCC
Q 003084 733 AYNNLSGKIP 742 (850)
Q Consensus 733 ~~N~l~~~~p 742 (850)
++|++.|.++
T Consensus 617 ~~N~~~c~c~ 626 (680)
T 1ziw_A 617 RFNPFDCTCE 626 (680)
T ss_dssp TTCCCCBCCC
T ss_pred cCCCcccCCc
Confidence 8888888776
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.8e-58 Score=541.55 Aligned_cols=598 Identities=20% Similarity=0.229 Sum_probs=492.6
Q ss_pred cEEecccCCcccccchhhHhhhcCCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCccccCCCCCC
Q 003084 84 EHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLR 163 (850)
Q Consensus 84 ~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 163 (850)
+.+++ +++.++. +|..+ .+++++|++++|.+++ +++..|.++++|++|++++|++.+..|.+|+++++|+
T Consensus 7 ~~~~c--s~~~L~~-ip~~~---~~~l~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 76 (680)
T 1ziw_A 7 EVADC--SHLKLTQ-VPDDL---PTNITVLNLTHNQLRR----LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK 76 (680)
T ss_dssp SEEEC--CSSCCSS-CCSCS---CTTCSEEECCSSCCCC----CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCC
T ss_pred CeeEC--CCCCccc-ccccc---CCCCcEEECCCCCCCC----cCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcC
Confidence 45566 5544432 33332 2578888888888876 5666788888888888888888888888888888888
Q ss_pred EEECCCCcCcCCCCcccccCCCCCCeEECcCCcCcCCCCcccccCCCCccEEEccCCccccccccccCCCCccceeEEEc
Q 003084 164 ILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSL 243 (850)
Q Consensus 164 ~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l 243 (850)
+|++++|.++ .+|...|.++++|++|++++|.+.+ .+...+.++++|+.|++++|.+...
T Consensus 77 ~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~------------------ 136 (680)
T 1ziw_A 77 VLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSST------------------ 136 (680)
T ss_dssp EEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCC-CCSCTTTTCTTCCEEECCSSCCSCC------------------
T ss_pred EEECCCCccC-ccChhhhccCCCCCEEECCCCccCc-cChhHccccCCCCEEECCCCccccc------------------
Confidence 8888888887 6777678888888888888888864 3334577788888888877765432
Q ss_pred cCCCCCCcccCccccCCCCccEEEccCCcccccCchhhh-hcCCCCcEEEccCCcCcCcCccCcCCCCCccEEEccCCcC
Q 003084 244 SSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLL-ENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNF 322 (850)
Q Consensus 244 s~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 322 (850)
.+..+..+++|++|++++|.+.+..+..+. ..+++|+.|++++|.+.+..+..+..+++|+.++++++.+
T Consensus 137 ---------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l 207 (680)
T 1ziw_A 137 ---------KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207 (680)
T ss_dssp ---------CCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCC
T ss_pred ---------CchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcccccc
Confidence 344456778888899988888776665542 2568999999999999998888899999999999999887
Q ss_pred CcCCChhhh--hcCCCCcEEEccCCcCcccCcccccCCCC--CCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCc
Q 003084 323 QGHIPVEIG--DILPSLVYFNISMNALDGSIPSSFGNVIF--LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKG 398 (850)
Q Consensus 323 ~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 398 (850)
......... ...++|++|++++|.+++..|..+..++. |++|++++|.++ .++...+..+++|++|++++|.+.+
T Consensus 208 ~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~ 286 (680)
T 1ziw_A 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLEYNNIQH 286 (680)
T ss_dssp HHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSCCBSE
T ss_pred ChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC-ccCcccccCcccccEeeCCCCccCc
Confidence 532222111 12478999999999999888999988865 999999999998 5555556679999999999999999
Q ss_pred cccccccCCCCCCeeeccCCcCcc-----cCC----cCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccc
Q 003084 399 HIFSRIFSLRNLRWLLLEGNHFVG-----EIP----QSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE 469 (850)
Q Consensus 399 ~~~~~~~~l~~L~~L~l~~n~l~~-----~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 469 (850)
..+..+.++++|++|++++|...+ .+| ..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.
T Consensus 287 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~ 366 (680)
T 1ziw_A 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366 (680)
T ss_dssp ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSC
T ss_pred cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchh
Confidence 999999999999999999875542 222 26888999999999999999988889999999999999999754
Q ss_pred cC--cchhccC--CCCCCEEeccCCcCCCCCCCCcC-CCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCc
Q 003084 470 GP--IPVEFCR--LDSLQILDISDNNISGSLPSCFY-PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSI 544 (850)
Q Consensus 470 ~~--~~~~~~~--l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 544 (850)
.. ....|.. .++|+.|++++|++.+..+..+. +++|+.|++++|.+.+.++...|.++++|++|++++|++.+..
T Consensus 367 ~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 446 (680)
T 1ziw_A 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446 (680)
T ss_dssp CCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECC
T ss_pred hhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeC
Confidence 22 2333433 36899999999999988887765 7899999999999988888778999999999999999999888
Q ss_pred CccccCCCCCCEEECcCCcCc--cCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCccccccc
Q 003084 545 PDWIDGLSQLSHLNLAHNNLE--GEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSIS 622 (850)
Q Consensus 545 ~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (850)
+..|..+++|+.|++++|.+. +..|..+..+++|+.|++++|++++.++..|..+.
T Consensus 447 ~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~---------------------- 504 (680)
T 1ziw_A 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE---------------------- 504 (680)
T ss_dssp TTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT----------------------
T ss_pred hhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccc----------------------
Confidence 899999999999999999986 56788999999999999999999988888777654
Q ss_pred CCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCC--------ccccCCCCCCEEECcCCcCCccCc
Q 003084 623 GPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIP--------PQIGNLTRIQTLNLSHNNLTGTIP 694 (850)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~~ 694 (850)
+|++|++++|++++..+ ..|.++++|+.|+|++|+++.+.+
T Consensus 505 -------------------------------~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~ 553 (680)
T 1ziw_A 505 -------------------------------KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553 (680)
T ss_dssp -------------------------------TCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred -------------------------------ccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH
Confidence 89999999999986522 237899999999999999997666
Q ss_pred ccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCcc-ccCCCCccccCCCCCCCCCCC-CCCCC
Q 003084 695 LTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTA-QFATFNKSSYDGNPFLCGLPL-PICRS 772 (850)
Q Consensus 695 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~-~~~~~~~~~~~~n~~~c~~~l-~~c~~ 772 (850)
..|+++++|+.|++++|++++..+..|..+++|+.|++++|++++..|..+. .++++..+.+++|||.|+|++ .|...
T Consensus 554 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~ 633 (680)
T 1ziw_A 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVN 633 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEEC
T ss_pred HHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHH
Confidence 7899999999999999999988788889999999999999999998887666 788899999999999999996 55554
Q ss_pred CC
Q 003084 773 LA 774 (850)
Q Consensus 773 ~~ 774 (850)
|.
T Consensus 634 ~~ 635 (680)
T 1ziw_A 634 WI 635 (680)
T ss_dssp CS
T ss_pred HH
Confidence 43
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.2e-53 Score=508.77 Aligned_cols=555 Identities=21% Similarity=0.163 Sum_probs=390.6
Q ss_pred CCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCcccccc-CccccCCCCCCEEECCCCcCcCCCCcccccCCC
Q 003084 107 MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSL-PWCLANTTSLRILDVSFNQLTGSISSSPLVHLT 185 (850)
Q Consensus 107 l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~ 185 (850)
.+++++|++++|.+++ +.+..|.++++|++|+|++|...+.+ |.+|.++++|++|+|++|.+++..|. .|.+++
T Consensus 23 p~~l~~LdLs~N~i~~----i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~-~~~~l~ 97 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRT----VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD-AFQGLF 97 (844)
T ss_dssp CTTCCEEEEESCCCCE----ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT-SSCSCS
T ss_pred CCCcCEEECCCCcCCc----cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh-HccCCc
Confidence 5688888888888865 55567888888888888888554444 77888888888888888888744454 788888
Q ss_pred CCCeEECcCCcCcCCCC-cccccCCCCccEEEccCCccccccccccCCCCccceeEEEccCCCCCCcccCccccCCCCcc
Q 003084 186 SIEELRLSNNHFRIPVS-LEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELK 264 (850)
Q Consensus 186 ~L~~L~L~~n~~~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~ 264 (850)
+|++|++++|.+.+..+ ...+.++++|+.|++++|.+.+. ..+..+.++++|+
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~--------------------------~~~~~~~~L~~L~ 151 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL--------------------------YLHPSFGKLNSLK 151 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC--------------------------CCCGGGGTCSSCC
T ss_pred ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc--------------------------ccchhHhhCCCCC
Confidence 88888888888875332 23466777777777777765422 1234567778888
Q ss_pred EEEccCCcccccCchhhhhcC--CCCcEEEccCCcCcCcCccCcCCCCC------ccEEEccCCcCCcCCChhhhhcC--
Q 003084 265 EAELSHIKMIGEFPNWLLENN--TKLEFLYLVNDSLAGPFRLPIHSHKR------LRFLDVSNNNFQGHIPVEIGDIL-- 334 (850)
Q Consensus 265 ~L~l~~~~~~~~~~~~~~~~~--~~L~~L~L~~~~~~~~~~~~~~~~~~------L~~L~Ls~n~l~~~~~~~~~~~l-- 334 (850)
+|++++|.+.+..+..+ ..+ ++|+.|+++.|.+.+..+..+..+++ |+.|++++|.+.+.++..+....
T Consensus 152 ~L~Ls~N~i~~~~~~~l-~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 230 (844)
T 3j0a_A 152 SIDFSSNQIFLVCEHEL-EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230 (844)
T ss_dssp EEEEESSCCCCCCSGGG-HHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred EEECCCCcCCeeCHHHc-ccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence 88888888877766654 344 78888888888888877766666555 88888888887776766655432
Q ss_pred CCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhc--CCCCCEEEccCCccCccccccccCCCCCCe
Q 003084 335 PSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMC--CVNLEFLSLSNNSLKGHIFSRIFSLRNLRW 412 (850)
Q Consensus 335 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 412 (850)
.+++.+.++.+..... +..+.+. ......+.+ .++|+.|++++|.+.+..+..|..+++|+.
T Consensus 231 ~~l~~L~l~~~~~~~~---------------~~~~~l~-~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 294 (844)
T 3j0a_A 231 SQAFSLILAHHIMGAG---------------FGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294 (844)
T ss_dssp CCBSEEECCSSCCBCS---------------SSCSSST-TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCE
T ss_pred ccccceeccccccccc---------------ccccccC-CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCE
Confidence 4566777664432210 1122232 222222222 367888888888888777778888888888
Q ss_pred eeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcC
Q 003084 413 LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNI 492 (850)
Q Consensus 413 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l 492 (850)
|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+....+..|..+++|+.|++++|.+
T Consensus 295 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 374 (844)
T 3j0a_A 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374 (844)
T ss_dssp EEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCS
T ss_pred EECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCC
Confidence 88888888877777888888888888888888877778888888888888888888877777788888888888888887
Q ss_pred CCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcC-ccccCCCCCCEEECcCCcCccCCch-
Q 003084 493 SGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP-DWIDGLSQLSHLNLAHNNLEGEVPI- 570 (850)
Q Consensus 493 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~- 570 (850)
++... .++|+.+++++|.+. .++. ...+++.|++++|++++... ..+.++++|+.|++++|++++..+.
T Consensus 375 ~~i~~----~~~L~~L~l~~N~l~-~l~~----~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 445 (844)
T 3j0a_A 375 TTIHF----IPSIPDIFLSGNKLV-TLPK----INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445 (844)
T ss_dssp CCCSS----CCSCSEEEEESCCCC-CCCC----CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSS
T ss_pred CcccC----CCCcchhccCCCCcc-cccc----cccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccc
Confidence 64321 567777888887775 3333 24578888888888876432 2355788888888888888755433
Q ss_pred hccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhh
Q 003084 571 QLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGR 650 (850)
Q Consensus 571 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (850)
.+..+++|+.|++++|.+++..+....... ..
T Consensus 446 ~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~------------------------------------------------~~ 477 (844)
T 3j0a_A 446 TPSENPSLEQLFLGENMLQLAWETELCWDV------------------------------------------------FE 477 (844)
T ss_dssp SSCSCTTCCBCEEESCCCSSSCCSCCCSSC------------------------------------------------SS
T ss_pred ccccCCccccccCCCCccccccccccchhh------------------------------------------------hc
Confidence 355578888888888888644332111000 01
Q ss_pred hhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEE
Q 003084 651 VLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIF 730 (850)
Q Consensus 651 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 730 (850)
.+++|++|+|++|++++..|..|.++++|+.|+|++|++++..|..+. ++|+.||+++|++++..|..+ .+|+.+
T Consensus 478 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l 552 (844)
T 3j0a_A 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVL 552 (844)
T ss_dssp CBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEE
T ss_pred CcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEE
Confidence 134788888888888888888888888888888888888877776665 788888888888888877665 467888
Q ss_pred EccCCcCcCCCCCCccccCCCCccccCCCCCCCCCCCC-CCCCCCCC
Q 003084 731 IVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLP-ICRSLATM 776 (850)
Q Consensus 731 ~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~-~c~~~~~~ 776 (850)
++++|++.|.++. ..|..+ ....+...|+.+.. .|..+...
T Consensus 553 ~l~~Np~~C~c~~--~~f~~~---~~~~~~~~~~~~~~~~C~~p~~~ 594 (844)
T 3j0a_A 553 DITHNKFICECEL--STFINW---LNHTNVTIAGPPADIYCVYPDSF 594 (844)
T ss_dssp EEEEECCCCSSSC--CSHHHH---HHHTTTTTCCCGGGCCCSSCSSS
T ss_pred EecCCCccccccc--HHHHHH---HHhcCcccccccccCccCCchhh
Confidence 8888888877653 222221 12234444444433 56655543
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.2e-52 Score=480.96 Aligned_cols=517 Identities=21% Similarity=0.212 Sum_probs=263.7
Q ss_pred CCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCCCC
Q 003084 109 SLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIE 188 (850)
Q Consensus 109 ~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~ 188 (850)
++++|++++|.+++ +++..|.++++|++|++++|++.+..|.+|.++++|++|++++|.+++..|. .|.++++|+
T Consensus 34 ~l~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~ 108 (606)
T 3t6q_A 34 STECLEFSFNVLPT----IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET-ALSGPKALK 108 (606)
T ss_dssp TCCEEECTTCCCSE----ECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT-TTSSCTTCC
T ss_pred cCcEEEccCCccCc----CChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh-hhccccccc
Confidence 45555555555543 3334555555555555555555555555555555555555555555422232 455555555
Q ss_pred eEECcCCcCcCCCCcccccCCCCccEEEccCCccccccccccCCCCccceeEEEccCCCCCCcccCccccCCCCccEEEc
Q 003084 189 ELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAEL 268 (850)
Q Consensus 189 ~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~l 268 (850)
+|++++|.+.+. +...+.++ ++|++|++
T Consensus 109 ~L~L~~n~i~~l-~~~~~~~l---------------------------------------------------~~L~~L~L 136 (606)
T 3t6q_A 109 HLFFIQTGISSI-DFIPLHNQ---------------------------------------------------KTLESLYL 136 (606)
T ss_dssp EEECTTSCCSCG-GGSCCTTC---------------------------------------------------TTCCEEEC
T ss_pred EeeccccCcccC-CcchhccC---------------------------------------------------CcccEEEC
Confidence 555555554421 11112233 33333444
Q ss_pred cCCccccc-CchhhhhcCCCCcEEEccCCcCcCcCccCcCCCCCcc--EEEccCCcCCcCCChhhhhcCCCCcEEEccCC
Q 003084 269 SHIKMIGE-FPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLR--FLDVSNNNFQGHIPVEIGDILPSLVYFNISMN 345 (850)
Q Consensus 269 ~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~--~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n 345 (850)
++|.+.+. .|.. ..+++|++|++++|.+.+..+..+..+++|+ .|++++|.+.+..| ..+. ..+|++|++++|
T Consensus 137 ~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~-~~~~-~~~L~~L~l~~~ 212 (606)
T 3t6q_A 137 GSNHISSIKLPKG--FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEP-GAFD-SAVFQSLNFGGT 212 (606)
T ss_dssp CSSCCCCCCCCTT--CCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECT-TTTT-TCEEEEEECTTC
T ss_pred CCCcccccCcccc--cCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccCh-hHhh-hccccccccCCc
Confidence 44333331 1221 1356666666666666655555555666666 66666666653333 2232 235666666655
Q ss_pred cCcccCcccccCCCCCCEEEccCCcCC----CCcchHHhhcCC--CCCEEEccCCccCccccccccCCCCCCeeeccCCc
Q 003084 346 ALDGSIPSSFGNVIFLQFLDLSNNKLT----GEIPDHLAMCCV--NLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNH 419 (850)
Q Consensus 346 ~l~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 419 (850)
. ..+..+..+..++...+.-..+. ..++...+.++. +|+.|++++|.+.+..+..|..+++|++|++++|.
T Consensus 213 ~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 289 (606)
T 3t6q_A 213 Q---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289 (606)
T ss_dssp S---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC
T ss_pred h---hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc
Confidence 4 12233333333332222221111 022222222222 45555555555554444445555555555555555
Q ss_pred CcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcc-hhccCCCCCCEEeccCCcCCCCCCC
Q 003084 420 FVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIP-VEFCRLDSLQILDISDNNISGSLPS 498 (850)
Q Consensus 420 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~ 498 (850)
+. .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+...
T Consensus 290 l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~- 367 (606)
T 3t6q_A 290 LS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC- 367 (606)
T ss_dssp CS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEE-
T ss_pred cC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccC-
Confidence 54 344445555555555555555554444445555555555555554443222 224455555555555554443220
Q ss_pred CcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCch-hccCCCC
Q 003084 499 CFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPI-QLCRLNQ 577 (850)
Q Consensus 499 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~ 577 (850)
.+. .+..+++|++|++++|++.+..|..+..+++|+.|++++|++.+..+. .+..+++
T Consensus 368 --------------------~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 426 (606)
T 3t6q_A 368 --------------------CNL-QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL 426 (606)
T ss_dssp --------------------STT-TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTT
T ss_pred --------------------cch-hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCccc
Confidence 022 455556666666666666555555566666666666666665544332 2555666
Q ss_pred CCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCe
Q 003084 578 LQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAG 657 (850)
Q Consensus 578 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 657 (850)
|++|++++|.+.+..+..+..++ +|++
T Consensus 427 L~~L~l~~n~l~~~~~~~~~~l~-----------------------------------------------------~L~~ 453 (606)
T 3t6q_A 427 LKVLNLSHSLLDISSEQLFDGLP-----------------------------------------------------ALQH 453 (606)
T ss_dssp CCEEECTTCCCBTTCTTTTTTCT-----------------------------------------------------TCCE
T ss_pred CCEEECCCCccCCcCHHHHhCCC-----------------------------------------------------CCCE
Confidence 66666666666555554444322 5666
Q ss_pred EEccCCccccC---CCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccC
Q 003084 658 LDLSCNKLVGH---IPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAY 734 (850)
Q Consensus 658 L~Ls~n~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~ 734 (850)
|++++|++++. .+..+..+++|+.|++++|++++..|..|+.+++|+.|++++|++++..|..+.+++.| .|++++
T Consensus 454 L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~ 532 (606)
T 3t6q_A 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLAS 532 (606)
T ss_dssp EECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCS
T ss_pred EECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcC
Confidence 66666665541 22345566666666666666665556666666666666666666666666666666666 666666
Q ss_pred CcCcCCCCCCccccCCCCccccCCCCCCCCCC
Q 003084 735 NNLSGKIPEWTAQFATFNKSSYDGNPFLCGLP 766 (850)
Q Consensus 735 N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~ 766 (850)
|++++.+|..+..+..+..+.++|||+.|+|+
T Consensus 533 N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 533 NHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp SCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 66665555555555556666666666666665
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.3e-51 Score=478.31 Aligned_cols=523 Identities=21% Similarity=0.201 Sum_probs=300.0
Q ss_pred CCcEEeCCCCcCCCcccCCcCCCCCcccEEecccCCcccccchhhHhhhcCCCCcEEEccCCCCCCCCCccCCcCCCCCC
Q 003084 57 SLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLA 136 (850)
Q Consensus 57 ~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~ 136 (850)
.+++|++++|.+++..+. .|.++++|++|++ ++|.+.+..+..+.. +++|++|++++|.+.+ +++..|.+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L--s~n~i~~~~~~~~~~-l~~L~~L~Ls~n~l~~----~~~~~~~~l~ 105 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNT-TFSRLINLTFLDL--TRCQIYWIHEDTFQS-QHRLDTLVLTANPLIF----MAETALSGPK 105 (606)
T ss_dssp TCCEEECTTCCCSEECTT-TSTTCTTCSEEEC--TTCCCCEECTTTTTT-CTTCCEEECTTCCCSE----ECTTTTSSCT
T ss_pred cCcEEEccCCccCcCChh-HhccCccceEEEC--CCCccceeChhhccC-ccccCeeeCCCCcccc----cChhhhcccc
Confidence 455555555555533332 4555555555555 555555544555554 5555555555555543 3334555556
Q ss_pred CCCEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCCCCeEECcCCcCcCCCCcccccCCCCcc--E
Q 003084 137 HLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLK--I 214 (850)
Q Consensus 137 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~--~ 214 (850)
+|++|++++|++++..+..|.++++|++|++++|.++ .++...+..+++|++|++++|.+.+ .....++.+++|+ .
T Consensus 106 ~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~l~ 183 (606)
T 3t6q_A 106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS-SIKLPKGFPTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLS 183 (606)
T ss_dssp TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCC-CCCCCTTCCCTTCCEEECCSSCCCE-ECHHHHHTTTTCCSEE
T ss_pred cccEeeccccCcccCCcchhccCCcccEEECCCCccc-ccCcccccCCcccCEEEcccCcccc-cChhhhhhhcccceeE
Confidence 6666666666555544555556666666666666555 3221123445666666666665552 2223344555555 5
Q ss_pred EEccCCccccccccccCCCCccceeEEEccCCCCCCcccCccccCCCCccEEEccCCcccccCchhhhhcCCCCcEEEcc
Q 003084 215 FDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLV 294 (850)
Q Consensus 215 L~l~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~ 294 (850)
+++++|.+.......+. ..+|+.|++ +++.. .+.. +..+..++...+.
T Consensus 184 L~l~~n~l~~~~~~~~~---~~~L~~L~l-------------------------~~~~~---~~~~-~~~l~~~~l~~l~ 231 (606)
T 3t6q_A 184 LNLNGNDIAGIEPGAFD---SAVFQSLNF-------------------------GGTQN---LLVI-FKGLKNSTIQSLW 231 (606)
T ss_dssp EECTTCCCCEECTTTTT---TCEEEEEEC-------------------------TTCSC---HHHH-HHHTTTCEEEEEE
T ss_pred EecCCCccCccChhHhh---hcccccccc-------------------------CCchh---HHHH-hhhccccchhhee
Confidence 55555555443322211 113444444 33321 1111 1233333222221
Q ss_pred CCcCcCcCccCcCCCCCccEEEccCCcCCcCCChhhhhcCC--CCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCC
Q 003084 295 NDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILP--SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLT 372 (850)
Q Consensus 295 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 372 (850)
...+. .+... .++...+..+. +|++|++++|.+++..+..|..+++|++|++++|.++
T Consensus 232 ~~~~~-----------~~~~~---------~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 291 (606)
T 3t6q_A 232 LGTFE-----------DMDDE---------DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS 291 (606)
T ss_dssp CCCCT-----------TSCCC---------CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS
T ss_pred chhhc-----------ccccc---------ccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC
Confidence 11111 11111 11222222121 5666667766666655556666667777777777666
Q ss_pred CCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCc-CCCCCCCCcEEECcCCCCCCCCccc
Q 003084 373 GEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQ-SLSKCSSLKGLYLNNNNLSGKIPRW 451 (850)
Q Consensus 373 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~ 451 (850)
.+|..+ ..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.++. .+..+++|++|++++|.+.+..
T Consensus 292 -~lp~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--- 366 (606)
T 3t6q_A 292 -ELPSGL-VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD--- 366 (606)
T ss_dssp -CCCSSC-CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE---
T ss_pred -CCChhh-cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc---
Confidence 555543 2355666666666666555555555566666666666655533332 2455555555555555544322
Q ss_pred ccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCc
Q 003084 452 LGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLV 531 (850)
Q Consensus 452 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 531 (850)
..+..+..+++|+.|++++|.+.+..+ ..+..+++|+
T Consensus 367 -------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~------------------------~~~~~l~~L~ 403 (606)
T 3t6q_A 367 -------------------CCNLQLRNLSHLQSLNLSYNEPLSLKT------------------------EAFKECPQLE 403 (606)
T ss_dssp -------------------ESTTTTTTCTTCCEEECCSCSCEEECT------------------------TTTTTCTTCS
T ss_pred -------------------CcchhcccCCCCCEEECCCCcCCcCCH------------------------HHhcCCccCC
Confidence 003444555555555555555432211 1444555555
Q ss_pred EEECcCCcCCCCcC-ccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccC---CCCcccCccccccCC
Q 003084 532 TLDLSYNYLNGSIP-DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLI---PSCFDNTTLHESYNN 607 (850)
Q Consensus 532 ~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~~~~~~~~~~~~~ 607 (850)
.|++++|++++..+ ..+..+++|+.|++++|.+.+..|..+..+++|++|++++|++.+.. +..+..
T Consensus 404 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~--------- 474 (606)
T 3t6q_A 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT--------- 474 (606)
T ss_dssp EEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG---------
T ss_pred eEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc---------
Confidence 55555555554433 23556666666666666666666666666677777777777665421 122222
Q ss_pred CCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCC
Q 003084 608 NSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHN 687 (850)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 687 (850)
+++|++|++++|++++..|..|.++++|+.|+|++|
T Consensus 475 --------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 475 --------------------------------------------LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp --------------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred --------------------------------------------CCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 347888999999998888899999999999999999
Q ss_pred cCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCC
Q 003084 688 NLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 743 (850)
Q Consensus 688 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~ 743 (850)
++++..|..+..+++| .|++++|++++..|..+..+++|+.+++++|++.|.++.
T Consensus 511 ~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 511 RLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp CCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred ccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 9999999999999999 999999999999999999999999999999999998874
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7.2e-52 Score=495.63 Aligned_cols=531 Identities=20% Similarity=0.208 Sum_probs=405.5
Q ss_pred cEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCCCCeE
Q 003084 111 KYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEEL 190 (850)
Q Consensus 111 ~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L 190 (850)
+..+.++++++. +|. -.++|++|+|++|.+++..+..|.++++|++|++++|...+.++...|.++++|++|
T Consensus 7 ~~~dcs~~~L~~----vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L 78 (844)
T 3j0a_A 7 RIAFYRFCNLTQ----VPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRIL 78 (844)
T ss_dssp EEEEESCCCSSC----CCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEE
T ss_pred eEEEccCCCCCC----CCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEE
Confidence 467888888876 553 347899999999999998899999999999999999976668866689999999999
Q ss_pred ECcCCcCcCCCCcccccCCCCccEEEccCCccccccccccCCCCccceeEEEccCCCCCCcccCccccCCCCccEEEccC
Q 003084 191 RLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSH 270 (850)
Q Consensus 191 ~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~l~~ 270 (850)
++++|.+.+.. ...+.++++|+.|++++|.+.+.... ..++..+++|++|++++
T Consensus 79 ~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~~~-------------------------~~~~~~L~~L~~L~Ls~ 132 (844)
T 3j0a_A 79 DLGSSKIYFLH-PDAFQGLFHLFELRLYFCGLSDAVLK-------------------------DGYFRNLKALTRLDLSK 132 (844)
T ss_dssp ECTTCCCCEEC-TTSSCSCSSCCCEECTTCCCSSCCST-------------------------TCCCSSCSSCCEEEEES
T ss_pred ECCCCcCcccC-HhHccCCcccCEeeCcCCCCCccccc-------------------------CccccccCCCCEEECCC
Confidence 99999887433 34567777777777777655421100 11233444555555555
Q ss_pred CcccccCchhhhhcCCCCcEEEccCCcCcCcCccCcCCCCCccEEEccCCcCCcCCChhhhhcC--CCCcEEEccCCcCc
Q 003084 271 IKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDIL--PSLVYFNISMNALD 348 (850)
Q Consensus 271 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l--~~L~~L~L~~n~l~ 348 (850)
|.+.+..+.. .+..+++|++|++++|.+++..+..+.. + ++|+.|+++.|.+.
T Consensus 133 N~l~~~~~~~------------------------~~~~L~~L~~L~Ls~N~i~~~~~~~l~~-l~~~~L~~L~L~~n~l~ 187 (844)
T 3j0a_A 133 NQIRSLYLHP------------------------SFGKLNSLKSIDFSSNQIFLVCEHELEP-LQGKTLSFFSLAANSLY 187 (844)
T ss_dssp CCCCCCCCCG------------------------GGGTCSSCCEEEEESSCCCCCCSGGGHH-HHHCSSCCCEECCSBSC
T ss_pred Ccccccccch------------------------hHhhCCCCCEEECCCCcCCeeCHHHccc-ccCCccceEECCCCccc
Confidence 5544433322 3445555555555555555433333322 2 45666666666665
Q ss_pred ccCcccccCCCC------CCEEEccCCcCCCCcchHHhhcC--CCCCEEEccC---------CccCccccccccCC--CC
Q 003084 349 GSIPSSFGNVIF------LQFLDLSNNKLTGEIPDHLAMCC--VNLEFLSLSN---------NSLKGHIFSRIFSL--RN 409 (850)
Q Consensus 349 ~~~~~~~~~l~~------L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~l~~---------n~l~~~~~~~~~~l--~~ 409 (850)
+..|..+..+.+ |++|++++|.+++.++..+.... .+++.+.++. +.+.......|.++ ++
T Consensus 188 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~ 267 (844)
T 3j0a_A 188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS 267 (844)
T ss_dssp CCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSC
T ss_pred cccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCC
Confidence 555555444443 66777777766655555444322 4566666552 33444445556554 78
Q ss_pred CCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccC
Q 003084 410 LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD 489 (850)
Q Consensus 410 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~ 489 (850)
|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++
T Consensus 268 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 347 (844)
T 3j0a_A 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347 (844)
T ss_dssp CCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCS
T ss_pred ccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCC
Confidence 99999999999988888999999999999999999988888999999999999999999988899999999999999999
Q ss_pred CcCCCCCCCCcC-CCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCC
Q 003084 490 NNISGSLPSCFY-PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV 568 (850)
Q Consensus 490 n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 568 (850)
|.+.+..+..+. +++|+.|++++|.+++ +..+++|+.|++++|+++. +|.. ..+++.|++++|++.+..
T Consensus 348 N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~------i~~~~~L~~L~l~~N~l~~-l~~~---~~~l~~L~ls~N~l~~l~ 417 (844)
T 3j0a_A 348 NHIAIIQDQTFKFLEKLQTLDLRDNALTT------IHFIPSIPDIFLSGNKLVT-LPKI---NLTANLIHLSENRLENLD 417 (844)
T ss_dssp CCCCCCCSSCSCSCCCCCEEEEETCCSCC------CSSCCSCSEEEEESCCCCC-CCCC---CTTCCEEECCSCCCCSST
T ss_pred CCCCccChhhhcCCCCCCEEECCCCCCCc------ccCCCCcchhccCCCCccc-cccc---ccccceeecccCccccCc
Confidence 999887776665 7899999999999863 3348899999999999984 4433 568999999999998653
Q ss_pred c-hhccCCCCCCEEeCCCCcCCccCCCC-cccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhc
Q 003084 569 P-IQLCRLNQLQLLDLSDNNLHGLIPSC-FDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYA 646 (850)
Q Consensus 569 ~-~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (850)
. ..+..+++|+.|++++|++++..+.. +..
T Consensus 418 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~------------------------------------------------ 449 (844)
T 3j0a_A 418 ILYFLLRVPHLQILILNQNRFSSCSGDQTPSE------------------------------------------------ 449 (844)
T ss_dssp THHHHTTCTTCCEEEEESCCCCCCCSSSSSCS------------------------------------------------
T ss_pred hhhhhhcCCccceeeCCCCccccccccccccc------------------------------------------------
Confidence 3 34568999999999999998765432 111
Q ss_pred chhhhhccCCeEEccCCccc-----cCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhh
Q 003084 647 YQGRVLSLLAGLDLSCNKLV-----GHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQL 721 (850)
Q Consensus 647 ~~~~~l~~L~~L~Ls~n~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 721 (850)
+++|+.|++++|.++ +..+..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..+
T Consensus 450 -----~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 524 (844)
T 3j0a_A 450 -----NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL 524 (844)
T ss_dssp -----CTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCC
T ss_pred -----CCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhh
Confidence 248999999999997 4455678999999999999999999999999999999999999999998777766
Q ss_pred hcCCCCCEEEccCCcCcCCCCCCccccCCCCccccCCCCCCCCCCCC
Q 003084 722 VDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLP 768 (850)
Q Consensus 722 ~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~ 768 (850)
. ++|+.|++++|++++.+|..+ ..+..+.++|||+.|+|++.
T Consensus 525 ~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 525 P--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELS 566 (844)
T ss_dssp C--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCC
T ss_pred h--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccccH
Confidence 5 899999999999999998754 56778899999999999875
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.5e-51 Score=473.72 Aligned_cols=365 Identities=22% Similarity=0.196 Sum_probs=240.4
Q ss_pred EEEccCCcCcCcCccCcCCCCCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcc------cCcccccCCC--CC
Q 003084 290 FLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG------SIPSSFGNVI--FL 361 (850)
Q Consensus 290 ~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~--~L 361 (850)
.+++++|.+.+..+..+... +|+.|++++|.+.+......+..++.++.+.+..+.+.. ..+..+..+. .+
T Consensus 185 ~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l 263 (606)
T 3vq2_A 185 SLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263 (606)
T ss_dssp EEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEE
T ss_pred eeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccH
Confidence 45555555544433333333 566666666665533333334445666666554433221 1111122221 24
Q ss_pred CEEEc-cCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECc
Q 003084 362 QFLDL-SNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLN 440 (850)
Q Consensus 362 ~~L~L-~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 440 (850)
+.+++ ..+.+.+.+|. +..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+ +.+| .+ .+++|+.|+++
T Consensus 264 ~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~ 336 (606)
T 3vq2_A 264 DEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLT 336 (606)
T ss_dssp EEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEE
T ss_pred hheeccccccccccccc--cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccc-cC-CCCccceeecc
Confidence 45555 44555544544 4446666667766666653 33 566666677777777766 3555 34 66677777777
Q ss_pred CCCCCCCCcccccCCCCCcEEECCCCccccCc--chhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccc
Q 003084 441 NNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPI--PVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQ 518 (850)
Q Consensus 441 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~ 518 (850)
+|...+. ..+..+++|++|++++|.+++.. +..+..+++|+.|++++|.+.+
T Consensus 337 ~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~------------------------ 390 (606)
T 3vq2_A 337 MNKGSIS--FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII------------------------ 390 (606)
T ss_dssp SCSSCEE--CCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE------------------------
T ss_pred CCcCccc--hhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc------------------------
Confidence 6644322 24556666777777776666542 5566666666666666665542
Q ss_pred cCccccCCCCCCcEEECcCCcCCCCcC-ccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCc-cCCCCc
Q 003084 519 LKEGTFFNCSSLVTLDLSYNYLNGSIP-DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHG-LIPSCF 596 (850)
Q Consensus 519 ~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~ 596 (850)
++ ..+..+++|+.|++++|++.+..+ ..+.++++|++|++++|.+.+..|..+.++++|++|++++|++++ ..|..+
T Consensus 391 ~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 469 (606)
T 3vq2_A 391 MS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF 469 (606)
T ss_dssp EC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred ch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhh
Confidence 22 266777888888888888877666 577788888888888888887778888888888888888888876 356656
Q ss_pred ccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCC
Q 003084 597 DNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNL 676 (850)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 676 (850)
..++ +|++|++++|++++..|..|.++
T Consensus 470 ~~l~-----------------------------------------------------~L~~L~Ls~n~l~~~~~~~~~~l 496 (606)
T 3vq2_A 470 ANTT-----------------------------------------------------NLTFLDLSKCQLEQISWGVFDTL 496 (606)
T ss_dssp TTCT-----------------------------------------------------TCCEEECTTSCCCEECTTTTTTC
T ss_pred ccCC-----------------------------------------------------CCCEEECCCCcCCccChhhhccc
Confidence 5533 78888888888888888888888
Q ss_pred CCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCC-CCCEEEccCCcCcCCCCC
Q 003084 677 TRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN-TLAIFIVAYNNLSGKIPE 743 (850)
Q Consensus 677 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~l~~N~l~~~~p~ 743 (850)
++|++|+|++|++++..|..|+.+++|+.|++++|+++ .+|..+..++ +|+.+++++|++.|.++.
T Consensus 497 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred ccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 88888888888888888888888888888888888888 5666688886 588888888888877764
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.9e-51 Score=473.43 Aligned_cols=533 Identities=19% Similarity=0.165 Sum_probs=417.5
Q ss_pred CcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCCCCe
Q 003084 110 LKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEE 189 (850)
Q Consensus 110 L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~ 189 (850)
-+.++.+++.++. +|. .+. +++++|++++|++.+..+..|.++++|++|++++|.++ .+++..|.++++|++
T Consensus 13 ~~~~~c~~~~l~~----ip~-~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~ 84 (606)
T 3vq2_A 13 NITYQCMDQKLSK----VPD-DIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSN 84 (606)
T ss_dssp TTEEECTTSCCSS----CCT-TSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCE
T ss_pred CCceEccCCCccc----CCC-CCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCE
Confidence 3567777777765 443 222 56777777777777776767777777777777777776 444436777777777
Q ss_pred EECcCCcCcCCCCcccccCCCCccEEEccCCccccccccccCCCCccceeEEEccCCCCCCcccCccccCCCCccEEEcc
Q 003084 190 LRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELS 269 (850)
Q Consensus 190 L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~l~ 269 (850)
|++++|.+.+..+ ..+.++++|++|++++|.+.
T Consensus 85 L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~---------------------------------------------- 117 (606)
T 3vq2_A 85 LILTGNPIQSFSP-GSFSGLTSLENLVAVETKLA---------------------------------------------- 117 (606)
T ss_dssp EECTTCCCCCCCT-TSSTTCTTCCEEECTTSCCC----------------------------------------------
T ss_pred eECCCCcccccCh-hhcCCcccCCEEEccCCccc----------------------------------------------
Confidence 7777777664222 33455555555555444432
Q ss_pred CCcccccCchhhhhcCCCCcEEEccCCcCcC-cCccCcCCCCCccEEEccCCcCCcCCChhhhhcCCC----CcEEEccC
Q 003084 270 HIKMIGEFPNWLLENNTKLEFLYLVNDSLAG-PFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPS----LVYFNISM 344 (850)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~----L~~L~L~~ 344 (850)
+..+.. ++.+++|++|++++|.+.+ .+|..+..+++|++|++++|.+++..+..+.. +++ +.++++++
T Consensus 118 -----~~~~~~-~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 118 -----SLESFP-IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF-LRENPQVNLSLDMSL 190 (606)
T ss_dssp -----CSSSSC-CTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHH-HHHCTTCCCEEECTT
T ss_pred -----cccccc-cCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhh-hhccccccceeeccC
Confidence 111111 3577889999999999886 45888999999999999999998654543332 333 55899999
Q ss_pred CcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCc------cccccccCCC--CCCeeec-
Q 003084 345 NALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKG------HIFSRIFSLR--NLRWLLL- 415 (850)
Q Consensus 345 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l~--~L~~L~l- 415 (850)
|.+++..+..+... +|++|++++|.+.+......+..+++++.+++..+.+.. ..+..+.++. .++.+++
T Consensus 191 n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 269 (606)
T 3vq2_A 191 NPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269 (606)
T ss_dssp CCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred CCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecc
Confidence 99997666666555 899999999998755555566779999998886554432 1122222222 4566667
Q ss_pred cCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCC
Q 003084 416 EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGS 495 (850)
Q Consensus 416 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ 495 (850)
..+.+.+..|. +..+++|+.|++++|.+.. +| .+..+++|++|++++|.+ +.+| .+ .+++|+.|++++|...+.
T Consensus 270 ~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~ 343 (606)
T 3vq2_A 270 YTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSIS 343 (606)
T ss_dssp CCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEE
T ss_pred ccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccc
Confidence 66777777776 8899999999999999974 45 788999999999999999 4666 45 899999999999966544
Q ss_pred CCCCcCCCcccEEEccCccccccc--CccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCc-hhc
Q 003084 496 LPSCFYPLSIKQVHLSKNMLHGQL--KEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP-IQL 572 (850)
Q Consensus 496 ~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l 572 (850)
. ....+++|+.|++++|.+++.. +. .+..+++|+.|++++|.+++ .|..+.++++|+.|++++|++.+..+ ..+
T Consensus 344 ~-~~~~l~~L~~L~ls~n~l~~~~~~~~-~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 420 (606)
T 3vq2_A 344 F-KKVALPSLSYLDLSRNALSFSGCCSY-SDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAF 420 (606)
T ss_dssp C-CCCCCTTCCEEECCSSCEEEEEECCH-HHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTT
T ss_pred h-hhccCCCCCEEECcCCccCCCcchhh-hhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhh
Confidence 4 3345889999999999987552 44 78899999999999999985 56889999999999999999998877 688
Q ss_pred cCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhh
Q 003084 573 CRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVL 652 (850)
Q Consensus 573 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 652 (850)
..+++|++|++++|.+.+..|..+..++
T Consensus 421 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~---------------------------------------------------- 448 (606)
T 3vq2_A 421 LSLEKLLYLDISYTNTKIDFDGIFLGLT---------------------------------------------------- 448 (606)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCT----------------------------------------------------
T ss_pred hccccCCEEECcCCCCCccchhhhcCCC----------------------------------------------------
Confidence 9999999999999999988888776644
Q ss_pred ccCCeEEccCCcccc-CCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEE
Q 003084 653 SLLAGLDLSCNKLVG-HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFI 731 (850)
Q Consensus 653 ~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 731 (850)
+|++|++++|++++ .+|..|+.+++|+.|+|++|++++..|..|+.+++|+.|++++|++++.+|..+..+++|+.|+
T Consensus 449 -~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 527 (606)
T 3vq2_A 449 -SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD 527 (606)
T ss_dssp -TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEE
T ss_pred -CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEE
Confidence 89999999999997 4788999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcCcCCCCCCccccC-CCCccccCCCCCCCCCCCC
Q 003084 732 VAYNNLSGKIPEWTAQFA-TFNKSSYDGNPFLCGLPLP 768 (850)
Q Consensus 732 l~~N~l~~~~p~~~~~~~-~~~~~~~~~n~~~c~~~l~ 768 (850)
+++|+++ .+|..+..+. ++..+.+++||+.|+|++.
T Consensus 528 l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 528 CSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp CTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred CCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence 9999999 5666577776 5899999999999999975
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5e-46 Score=428.61 Aligned_cols=272 Identities=22% Similarity=0.294 Sum_probs=181.0
Q ss_pred CeeeccCC-cCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccC
Q 003084 411 RWLLLEGN-HFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD 489 (850)
Q Consensus 411 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~ 489 (850)
+.++++++ .+.+..+..+..+++|+.|++++|.+. .+|..+..+ +|++|++++|.+.. .|. ..+++|+.|++++
T Consensus 260 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~-l~~--~~l~~L~~L~l~~ 334 (570)
T 2z63_A 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQ-FPT--LKLKSLKRLTFTS 334 (570)
T ss_dssp EEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSS-CCB--CBCSSCCEEEEES
T ss_pred hhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccc-cCc--ccccccCEEeCcC
Confidence 44444444 444445555555666666666666655 345555555 66666666666552 222 3455666666666
Q ss_pred CcCCCCCCCCcCCCcccEEEccCccccccc--CccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccC
Q 003084 490 NNISGSLPSCFYPLSIKQVHLSKNMLHGQL--KEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGE 567 (850)
Q Consensus 490 n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 567 (850)
|.+.+..+. ..+++|+.|++++|.+.+.. +. .+..+++|+.|++++|.+.+..+. +.++++|+.|++++|.+.+.
T Consensus 335 n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~ 411 (570)
T 2z63_A 335 NKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQ-SDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQM 411 (570)
T ss_dssp CBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEH-HHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESC
T ss_pred Ccccccccc-ccCCCCCEEeCcCCccCccccccc-cccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccc
Confidence 665544433 33555666666666554332 22 566777788888888877754433 77778888888888877765
Q ss_pred Cc-hhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhc
Q 003084 568 VP-IQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYA 646 (850)
Q Consensus 568 ~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (850)
.+ ..+..+++|++|++++|.+.+..+..+..++
T Consensus 412 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---------------------------------------------- 445 (570)
T 2z63_A 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS---------------------------------------------- 445 (570)
T ss_dssp TTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT----------------------------------------------
T ss_pred cchhhhhcCCCCCEEeCcCCcccccchhhhhcCC----------------------------------------------
Confidence 54 4567777888888888877776666665433
Q ss_pred chhhhhccCCeEEccCCccc-cCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCC
Q 003084 647 YQGRVLSLLAGLDLSCNKLV-GHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN 725 (850)
Q Consensus 647 ~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 725 (850)
+|++|++++|.++ +.+|..+..+++|+.|++++|++++..|..|+.+++|+.|++++|++++..|..+..++
T Consensus 446 -------~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 518 (570)
T 2z63_A 446 -------SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT 518 (570)
T ss_dssp -------TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred -------cCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhccc
Confidence 6788888888776 45677777788888888888888777777777788888888888888777777777788
Q ss_pred CCCEEEccCCcCcCCCCC
Q 003084 726 TLAIFIVAYNNLSGKIPE 743 (850)
Q Consensus 726 ~L~~L~l~~N~l~~~~p~ 743 (850)
+|+.|++++|+++|.+|.
T Consensus 519 ~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 519 SLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TCCEEECCSSCBCCCTTT
T ss_pred CCcEEEecCCcccCCCcc
Confidence 888888888888777775
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-44 Score=417.26 Aligned_cols=468 Identities=21% Similarity=0.189 Sum_probs=385.0
Q ss_pred ceeEEEccCCCCCCcccCccccCCCCccEEEccCCcccccCchhhhhcCCCCcEEEccCCcCcCcCccCcCCCCCccEEE
Q 003084 237 QLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLD 316 (850)
Q Consensus 237 ~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ 316 (850)
+++.|++ .++.+.+..+..+..+++|++|++++|.+.+..+.. ++.+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 29 ~l~~L~L-s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 29 STKNLDL-SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SCCEEEC-CSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTT-TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred cccEEEc-cCCccCccChhHhhCCCCceEEECCCCcCCccCccc-ccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 7899999 444555555667888999999999999877654444 47889999999999999888888899999999999
Q ss_pred ccCCcCCcCCChhhhhcCCCCcEEEccCCcCcc-cCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCC----CEEEc
Q 003084 317 VSNNNFQGHIPVEIGDILPSLVYFNISMNALDG-SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNL----EFLSL 391 (850)
Q Consensus 317 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L----~~L~l 391 (850)
+++|.++ .++...+..+++|++|++++|.+++ .+|..++++++|++|++++|.++ .++...+..+++| +.|++
T Consensus 107 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 107 AVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDL 184 (570)
T ss_dssp CTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC-EECGGGGHHHHTCTTCCCEEEC
T ss_pred ccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc-eecHHHccchhccchhhhhccc
Confidence 9999987 5555445568899999999999886 46888999999999999999988 5554444457777 88999
Q ss_pred cCCccCccccccccCCCCCCeeeccCCcCcc-------------------------------cCCcCCCCCC--CCcEEE
Q 003084 392 SNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG-------------------------------EIPQSLSKCS--SLKGLY 438 (850)
Q Consensus 392 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------------------~~~~~~~~l~--~L~~L~ 438 (850)
++|.+.+..+..+... +|+.|++++|.... .....+..++ .++.++
T Consensus 185 ~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 263 (570)
T 2z63_A 185 SLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263 (570)
T ss_dssp TTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred CCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence 9999988877777665 78999888874221 0111122222 245566
Q ss_pred CcCC-CCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCccccc
Q 003084 439 LNNN-NLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHG 517 (850)
Q Consensus 439 l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~ 517 (850)
+.++ .+.+..+..+..+++|++|++++|.+. .+|..+..+ +|+.|++++|.+. .+|. ...++|+.|++++|.+.+
T Consensus 264 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l~~n~~~~ 339 (570)
T 2z63_A 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT-LKLKSLKRLTFTSNKGGN 339 (570)
T ss_dssp EEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB-CBCSSCCEEEEESCBSCC
T ss_pred hhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc-ccccccCEEeCcCCcccc
Confidence 6666 566677788889999999999999988 467777788 9999999999998 4444 467899999999999876
Q ss_pred ccCccccCCCCCCcEEECcCCcCCCCc--CccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCC-C
Q 003084 518 QLKEGTFFNCSSLVTLDLSYNYLNGSI--PDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP-S 594 (850)
Q Consensus 518 ~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~ 594 (850)
..+. ..+++|+.|++++|.+++.. +..+.++++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ .
T Consensus 340 ~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~ 415 (570)
T 2z63_A 340 AFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFS 415 (570)
T ss_dssp BCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSC
T ss_pred cccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchh
Confidence 6543 67899999999999998654 67788999999999999999865554 8999999999999999887655 3
Q ss_pred CcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCcccc
Q 003084 595 CFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIG 674 (850)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 674 (850)
.+.. +++|++|++++|.+.+..|..|.
T Consensus 416 ~~~~-----------------------------------------------------l~~L~~L~l~~n~l~~~~~~~~~ 442 (570)
T 2z63_A 416 VFLS-----------------------------------------------------LRNLIYLDISHTHTRVAFNGIFN 442 (570)
T ss_dssp TTTT-----------------------------------------------------CTTCCEEECTTSCCEECCTTTTT
T ss_pred hhhc-----------------------------------------------------CCCCCEEeCcCCcccccchhhhh
Confidence 4443 34899999999999999999999
Q ss_pred CCCCCCEEECcCCcCC-ccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCccccCCCCc
Q 003084 675 NLTRIQTLNLSHNNLT-GTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNK 753 (850)
Q Consensus 675 ~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~ 753 (850)
++++|+.|++++|.++ +.+|..++.+++|+.|++++|++++..|..+..+++|+.|++++|++++.+|..+..++.+..
T Consensus 443 ~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 522 (570)
T 2z63_A 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522 (570)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcE
Confidence 9999999999999998 578999999999999999999999999999999999999999999999998888889999999
Q ss_pred cccCCCCCCCCCCCCCC
Q 003084 754 SSYDGNPFLCGLPLPIC 770 (850)
Q Consensus 754 ~~~~~n~~~c~~~l~~c 770 (850)
+.+++||+.|+||..++
T Consensus 523 L~l~~N~~~~~~~~~~~ 539 (570)
T 2z63_A 523 IWLHTNPWDCSCPRIDY 539 (570)
T ss_dssp EECCSSCBCCCTTTTHH
T ss_pred EEecCCcccCCCcchHH
Confidence 99999999999986533
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.2e-44 Score=412.48 Aligned_cols=491 Identities=20% Similarity=0.203 Sum_probs=316.7
Q ss_pred EEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCCCCeEE
Q 003084 112 YLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELR 191 (850)
Q Consensus 112 ~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~ 191 (850)
..+.+++.++. +|. .+. ++|++|++++|++++..|.+|.++++|++|++++|.++ .++...|.++++|++|+
T Consensus 9 ~c~~~~~~l~~----ip~-~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 9 VCDGRSRSFTS----IPS-GLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp EEECTTSCCSS----CCS-CCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEE
T ss_pred eEECCCCcccc----ccc-cCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEE
Confidence 34555555543 333 221 45666666666666555566666666666666666665 33333566666666666
Q ss_pred CcCCcCcCCCCcccccCCCCccEEEccCCccccccccccCCCCccceeEEEccCCCCCCcccCccccCCCCccEEEccCC
Q 003084 192 LSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHI 271 (850)
Q Consensus 192 L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~l~~~ 271 (850)
+++|.+.+ .+...++++++|++|++++|.+... ..|..+..+++|++|++++|
T Consensus 81 Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~--------------------------~~~~~~~~l~~L~~L~L~~n 133 (549)
T 2z81_A 81 LSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTL--------------------------GVTSLFPNLTNLQTLRIGNV 133 (549)
T ss_dssp CTTSCCCS-CCHHHHTTCTTCCEEECTTCCCSSS--------------------------CSSCSCTTCTTCCEEEEEES
T ss_pred CCCCccCc-cCHHHhccCCCCcEEECCCCccccc--------------------------chhhhhhccCCccEEECCCC
Confidence 66666553 2223355556666666555544321 11233445566666666666
Q ss_pred cccccCchhhhhcCCCCcEEEccCCcCcCcCccCcCCCCCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccC
Q 003084 272 KMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSI 351 (850)
Q Consensus 272 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 351 (850)
...+.+|...+..+++|++|++++|.+.+..+..+..+++|++|+++.|.+. .+|..++..+++|++|++++|.+++..
T Consensus 134 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~ 212 (549)
T 2z81_A 134 ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQ 212 (549)
T ss_dssp SSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCC
T ss_pred ccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcccccc
Confidence 6555555544567888888888888888878888888889999999988876 667666666888899999888887532
Q ss_pred --c-ccccCCCCCCEEEccCCcCCCCcchHHh---hcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCC
Q 003084 352 --P-SSFGNVIFLQFLDLSNNKLTGEIPDHLA---MCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIP 425 (850)
Q Consensus 352 --~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 425 (850)
| .....+++|+.|++++|.+++..+..+. ..+++|+.+++++|.+.+... ++ ....
T Consensus 213 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~-----~~-------------~~~~ 274 (549)
T 2z81_A 213 FSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD-----FN-------------PSES 274 (549)
T ss_dssp CCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSC-----CC-------------CCTT
T ss_pred ccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccc-----cc-------------ccch
Confidence 1 1223456777777777766543333322 224455555555555432110 00 0011
Q ss_pred cCCCCCCCCcEEECcCCCCCCC-----CcccccCCCCCcEEECCCCccccCcchhc-cCCCCCCEEeccCCcCCCCCCCC
Q 003084 426 QSLSKCSSLKGLYLNNNNLSGK-----IPRWLGNLKGLQHIVMPKNHLEGPIPVEF-CRLDSLQILDISDNNISGSLPSC 499 (850)
Q Consensus 426 ~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~ls~n~l~~~~~~~ 499 (850)
..+..+++++.|++.++.+... .+..+...++|+.|++++|.+.. +|..+ ..+++|+.|++++|.+.
T Consensus 275 ~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~------ 347 (549)
T 2z81_A 275 DVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMV------ 347 (549)
T ss_dssp TCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCC------
T ss_pred hhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcccc-CCHHHHhcCccccEEEccCCccc------
Confidence 2234556666777666655421 11112223455566666555542 33322 34555666666555554
Q ss_pred cCCCcccEEEccCcccccccC--ccccCCCCCCcEEECcCCcCCCCcC--ccccCCCCCCEEECcCCcCccCCchhccCC
Q 003084 500 FYPLSIKQVHLSKNMLHGQLK--EGTFFNCSSLVTLDLSYNYLNGSIP--DWIDGLSQLSHLNLAHNNLEGEVPIQLCRL 575 (850)
Q Consensus 500 ~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 575 (850)
+.++ ...+..+++|+.|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..+
T Consensus 348 -----------------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~ 409 (549)
T 2z81_A 348 -----------------EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP 409 (549)
T ss_dssp -----------------HHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCC
T ss_pred -----------------cccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccc
Confidence 3222 1135677888888888888876532 45788889999999999888 567778888
Q ss_pred CCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccC
Q 003084 576 NQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLL 655 (850)
Q Consensus 576 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 655 (850)
++|++|++++|.+++..... +++|
T Consensus 410 ~~L~~L~Ls~N~l~~l~~~~--------------------------------------------------------~~~L 433 (549)
T 2z81_A 410 EKMRFLNLSSTGIRVVKTCI--------------------------------------------------------PQTL 433 (549)
T ss_dssp TTCCEEECTTSCCSCCCTTS--------------------------------------------------------CTTC
T ss_pred ccccEEECCCCCcccccchh--------------------------------------------------------cCCc
Confidence 89999999999886433211 1268
Q ss_pred CeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCC
Q 003084 656 AGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN 735 (850)
Q Consensus 656 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N 735 (850)
++||+++|++++.. ..+++|++|+|++|+++ .+|. ...+++|+.|++++|++++.+|..+..+++|+.|++++|
T Consensus 434 ~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 507 (549)
T 2z81_A 434 EVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507 (549)
T ss_dssp SEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred eEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCC
Confidence 99999999998643 57889999999999998 5565 467899999999999999888888999999999999999
Q ss_pred cCcCCCCC
Q 003084 736 NLSGKIPE 743 (850)
Q Consensus 736 ~l~~~~p~ 743 (850)
++.|.+|.
T Consensus 508 ~~~~~~~~ 515 (549)
T 2z81_A 508 PWDCSCPR 515 (549)
T ss_dssp CBCCCHHH
T ss_pred CccCCCcc
Confidence 99988873
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.1e-44 Score=409.47 Aligned_cols=487 Identities=19% Similarity=0.202 Sum_probs=347.5
Q ss_pred EEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCCCCeEECcCCcCcCCCCcccccCCCCccEEEccC
Q 003084 140 ELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKN 219 (850)
Q Consensus 140 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~ 219 (850)
..+.+++.++ .+|..+. ++|++|++++|.++ .++...|.++++|++|++++|.+.+. +
T Consensus 9 ~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~-~----------------- 66 (549)
T 2z81_A 9 VCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTI-E----------------- 66 (549)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEE-C-----------------
T ss_pred eEECCCCccc-cccccCC--CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCcc-C-----------------
Confidence 3455555555 3343332 56666666666665 33322566666666666666655421 1
Q ss_pred CccccccccccCCCCccceeEEEccCCCCCCcccCccccCCCCccEEEccCCcccccCchhhhhcCCCCcEEEccCCcCc
Q 003084 220 NEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLA 299 (850)
Q Consensus 220 n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 299 (850)
|..+..+++|++|++++|.+.+..|.. ++.+++|++|++++|.+.
T Consensus 67 ----------------------------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~ 111 (549)
T 2z81_A 67 ----------------------------------GDAFYSLGSLEHLDLSDNHLSSLSSSW-FGPLSSLKYLNLMGNPYQ 111 (549)
T ss_dssp ----------------------------------TTTTTTCTTCCEEECTTSCCCSCCHHH-HTTCTTCCEEECTTCCCS
T ss_pred ----------------------------------hhhccccccCCEEECCCCccCccCHHH-hccCCCCcEEECCCCccc
Confidence 222334445555555555555444433 367788888888888887
Q ss_pred Cc-CccCcCCCCCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchH
Q 003084 300 GP-FRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDH 378 (850)
Q Consensus 300 ~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 378 (850)
+. .+..+..+++|++|++++|.+.+.+|...+..+++|++|++++|.+++..|..+..+++|++|++++|.+. .+|..
T Consensus 112 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~ 190 (549)
T 2z81_A 112 TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEI 190 (549)
T ss_dssp SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHH
T ss_pred ccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchh
Confidence 63 45678889999999999998555777666666899999999999999889999999999999999999987 78888
Q ss_pred HhhcCCCCCEEEccCCccCccc---cccccCCCCCCeeeccCCcCcccCC----cCCCCCCCCcEEECcCCCCCCCCccc
Q 003084 379 LAMCCVNLEFLSLSNNSLKGHI---FSRIFSLRNLRWLLLEGNHFVGEIP----QSLSKCSSLKGLYLNNNNLSGKIPRW 451 (850)
Q Consensus 379 ~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~ 451 (850)
++..+++|++|++++|.+.+.. ......+++|+.|++++|.+.+..+ ..+..+++|+.+++++|.+.+.....
T Consensus 191 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~ 270 (549)
T 2z81_A 191 FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFN 270 (549)
T ss_dssp HHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCC
T ss_pred hHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccc
Confidence 7777899999999999988642 1223456778888888877664322 23345667777777777654321100
Q ss_pred ccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCC-----CCCc-CCCcccEEEccCcccccccCccccC
Q 003084 452 LGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSL-----PSCF-YPLSIKQVHLSKNMLHGQLKEGTFF 525 (850)
Q Consensus 452 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~-----~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~ 525 (850)
. .....+..+++|+.|+++++.+.... +..+ ...+|+.+++++|.+. .+|...+.
T Consensus 271 -----~-------------~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~ 331 (549)
T 2z81_A 271 -----P-------------SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQ 331 (549)
T ss_dssp -----C-------------CTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHH
T ss_pred -----c-------------cchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHh
Confidence 0 00112233445555555555443211 0000 1346677777777664 56654556
Q ss_pred CCCCCcEEECcCCcCCCCcC---ccccCCCCCCEEECcCCcCccCCc--hhccCCCCCCEEeCCCCcCCccCCCCcccCc
Q 003084 526 NCSSLVTLDLSYNYLNGSIP---DWIDGLSQLSHLNLAHNNLEGEVP--IQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT 600 (850)
Q Consensus 526 ~~~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 600 (850)
.+++|+.|++++|++++..| ..++.+++|++|++++|++++..+ ..+..+++|++|++++|++++ +|..+..
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~-- 408 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQW-- 408 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCC--
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhhcc--
Confidence 89999999999999987654 347889999999999999986543 568899999999999999985 4444433
Q ss_pred cccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCC
Q 003084 601 LHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQ 680 (850)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 680 (850)
+++|++|++++|++++ +|..+ .++|+
T Consensus 409 ---------------------------------------------------~~~L~~L~Ls~N~l~~-l~~~~--~~~L~ 434 (549)
T 2z81_A 409 ---------------------------------------------------PEKMRFLNLSSTGIRV-VKTCI--PQTLE 434 (549)
T ss_dssp ---------------------------------------------------CTTCCEEECTTSCCSC-CCTTS--CTTCS
T ss_pred ---------------------------------------------------cccccEEECCCCCccc-ccchh--cCCce
Confidence 2389999999999984 44444 26899
Q ss_pred EEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCccccCCCCccccCCCC
Q 003084 681 TLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNP 760 (850)
Q Consensus 681 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~ 760 (850)
.|+|++|++++.. ..+++|+.|++++|+++ .+|. ...+++|++|++++|++++.+|.++..+..+..+.+++||
T Consensus 435 ~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 435 VLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp EEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred EEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence 9999999999653 57899999999999999 6676 4689999999999999999999888999999999999999
Q ss_pred CCCCCC
Q 003084 761 FLCGLP 766 (850)
Q Consensus 761 ~~c~~~ 766 (850)
+.|+||
T Consensus 509 ~~~~~~ 514 (549)
T 2z81_A 509 WDCSCP 514 (549)
T ss_dssp BCCCHH
T ss_pred ccCCCc
Confidence 999997
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2e-45 Score=424.92 Aligned_cols=384 Identities=19% Similarity=0.248 Sum_probs=221.7
Q ss_pred CcCcCcCccCcCCCCCccEEEccCCcCCcC-----------------CChhhh-hcCCCCcEEEccCCcCcccCcccccC
Q 003084 296 DSLAGPFRLPIHSHKRLRFLDVSNNNFQGH-----------------IPVEIG-DILPSLVYFNISMNALDGSIPSSFGN 357 (850)
Q Consensus 296 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-----------------~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~ 357 (850)
|.+++ +|..+.++++|++|++++|.+++. +|..+. ..+++|++|++++|.+.+.+|..+++
T Consensus 193 n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 193 NNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred CCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 44454 455555666666666666666543 554443 12555555565555555555555555
Q ss_pred CCCCCEEEccCCc-CCC-CcchHHhh-----cCCCCCEEEccCCccCccccc--cccCCCCCCeeeccCCcCcccCCcCC
Q 003084 358 VIFLQFLDLSNNK-LTG-EIPDHLAM-----CCVNLEFLSLSNNSLKGHIFS--RIFSLRNLRWLLLEGNHFVGEIPQSL 428 (850)
Q Consensus 358 l~~L~~L~L~~n~-l~~-~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~ 428 (850)
+++|++|++++|+ +++ .+|..+.. .+++|++|++++|.+. .+|. .+..+++|++|++++|.+.+.+| .+
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~ 349 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AF 349 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CC
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hh
Confidence 5556666666555 554 45554432 1245555555555554 3444 44555555555555555544444 44
Q ss_pred CCCCCCcEEECcCCCCCCCCcccccCCCC-CcEEECCCCccccCcchhccCCC--CCCEEeccCCcCCCCCCCCcCCCcc
Q 003084 429 SKCSSLKGLYLNNNNLSGKIPRWLGNLKG-LQHIVMPKNHLEGPIPVEFCRLD--SLQILDISDNNISGSLPSCFYPLSI 505 (850)
Q Consensus 429 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~ls~n~l~~~~~~~~~~~~L 505 (850)
..+++|+.|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..++ +|+.|++++|.+.
T Consensus 350 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~------------ 415 (636)
T 4eco_A 350 GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIG------------ 415 (636)
T ss_dssp EEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTT------------
T ss_pred CCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCC------------
Confidence 44445555555555444 33444444444 444444444444 3333333322 4444444444444
Q ss_pred cEEEccCcccccccCccccC-------CCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCC--
Q 003084 506 KQVHLSKNMLHGQLKEGTFF-------NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLN-- 576 (850)
Q Consensus 506 ~~L~l~~n~~~~~~~~~~~~-------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-- 576 (850)
+..|. .+. .+++|+.|++++|+++...+..+..+++|++|++++|+++...+..+....
T Consensus 416 -----------~~~p~-~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~ 483 (636)
T 4eco_A 416 -----------SVDGK-NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483 (636)
T ss_dssp -----------TTTTC-SSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEE
T ss_pred -----------Ccchh-hhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccccc
Confidence 33333 333 556778888888887755555566677888888888887743333333332
Q ss_pred -----CCCEEeCCCCcCCccCCCCcc--cCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchh
Q 003084 577 -----QLQLLDLSDNNLHGLIPSCFD--NTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQG 649 (850)
Q Consensus 577 -----~L~~L~Ls~n~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (850)
+|+.|++++|+++. +|..+. .
T Consensus 484 ~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~--------------------------------------------------- 511 (636)
T 4eco_A 484 FKNTYLLTSIDLRFNKLTK-LSDDFRATT--------------------------------------------------- 511 (636)
T ss_dssp CTTGGGCCEEECCSSCCCB-CCGGGSTTT---------------------------------------------------
T ss_pred ccccCCccEEECcCCcCCc-cChhhhhcc---------------------------------------------------
Confidence 78888888888773 333332 2
Q ss_pred hhhccCCeEEccCCccccCCCccccCCCCCCEEEC------cCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhc
Q 003084 650 RVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNL------SHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVD 723 (850)
Q Consensus 650 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 723 (850)
+++|++|+|++|++++ +|..+..+++|+.|+| ++|++.+.+|..++.+++|+.|+|++|++ +.+|..+.
T Consensus 512 --l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~- 586 (636)
T 4eco_A 512 --LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT- 586 (636)
T ss_dssp --CTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-
T ss_pred --CCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-
Confidence 3378888888888886 7777788888888888 45777778888888888888888888888 46776654
Q ss_pred CCCCCEEEccCCcCcCCCCCCccc--cCCCCccccCCCCCCCCCC
Q 003084 724 LNTLAIFIVAYNNLSGKIPEWTAQ--FATFNKSSYDGNPFLCGLP 766 (850)
Q Consensus 724 l~~L~~L~l~~N~l~~~~p~~~~~--~~~~~~~~~~~n~~~c~~~ 766 (850)
++|+.|++++|++.+..+..+.. ......+.+......|+||
T Consensus 587 -~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~ 630 (636)
T 4eco_A 587 -PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCD 630 (636)
T ss_dssp -TTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCG
T ss_pred -CcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCCCc
Confidence 78888888888776544332211 1112233344455555554
No 16
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.8e-42 Score=404.90 Aligned_cols=520 Identities=20% Similarity=0.193 Sum_probs=299.3
Q ss_pred CCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCCCC
Q 003084 109 SLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIE 188 (850)
Q Consensus 109 ~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~ 188 (850)
++++|||++|.|++ +++.+|.++++|++|+|++|++++..+.+|.++++|++|+|++|.++ .+|...|.++++|+
T Consensus 53 ~~~~LdLs~N~i~~----l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 53 STKNLDLSFNPLRH----LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQ 127 (635)
T ss_dssp TCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCC
T ss_pred CCCEEEeeCCCCCC----CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCC
Confidence 67777777777764 66566777777777777777777666667777777777777777776 56655677777777
Q ss_pred eEECcCCcCcCCCCcccccCCCCccEEEccCCccccccccccCCCCccceeEEEccCCCCCCcccCccccCCCCccEEEc
Q 003084 189 ELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAEL 268 (850)
Q Consensus 189 ~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~l 268 (850)
+|++++|.+++ .+...++++++|+.|++++|
T Consensus 128 ~L~Ls~N~l~~-l~~~~~~~L~~L~~L~Ls~N------------------------------------------------ 158 (635)
T 4g8a_A 128 KLVAVETNLAS-LENFPIGHLKTLKELNVAHN------------------------------------------------ 158 (635)
T ss_dssp EEECTTSCCCC-STTCCCTTCTTCCEEECCSS------------------------------------------------
T ss_pred EEECCCCcCCC-CChhhhhcCcccCeeccccC------------------------------------------------
Confidence 77777776653 22223444444444444444
Q ss_pred cCCccccc-CchhhhhcCCCCcEEEccCCcCcCcCccCcCCCCCc----cEEEccCCcCCcCCChhhhhcCCCCcEEEcc
Q 003084 269 SHIKMIGE-FPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRL----RFLDVSNNNFQGHIPVEIGDILPSLVYFNIS 343 (850)
Q Consensus 269 ~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L----~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~ 343 (850)
.+.+. .|.. +..+++|++|++++|.+.+..+..+..+.++ ..++++.|.+. .++...+. ...+..+++.
T Consensus 159 ---~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~-~i~~~~~~-~~~~~~l~l~ 232 (635)
T 4g8a_A 159 ---LIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFK-EIRLHKLTLR 232 (635)
T ss_dssp ---CCCCCCCCGG-GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC-EECTTTTT-TCEEEEEEEE
T ss_pred ---ccccCCCchh-hccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccc-ccCccccc-chhhhhhhhh
Confidence 33221 2222 3566777777777777766555544333222 24555555554 33333332 1234445554
Q ss_pred CCcCcc-cCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCc-
Q 003084 344 MNALDG-SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFV- 421 (850)
Q Consensus 344 ~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~- 421 (850)
+|.... ..+..+..+..++...+..+.... ...+.......+..+..+....+..+...
T Consensus 233 ~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~-------------------~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~ 293 (635)
T 4g8a_A 233 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN-------------------EGNLEKFDKSALEGLCNLTIEEFRLAYLDY 293 (635)
T ss_dssp SCCSSHHHHHHHHHTTTTCEEEEEEEECCTT-------------------SCCCSCCCTTTTGGGGGSEEEEEEEECCCS
T ss_pred cccccccccchhhcCCccccccccccccccc-------------------ccccccccccccccccchhhhhhhhhhhcc
Confidence 443321 122233344444443332221110 00011111122222233333333222111
Q ss_pred --ccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCC
Q 003084 422 --GEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSC 499 (850)
Q Consensus 422 --~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~ 499 (850)
...+..+..+.+++.+++.++.+... ..+.....++.|++.+|.+....+ ..+..|+.++++.|..... +..
T Consensus 294 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~-~~~ 367 (635)
T 4g8a_A 294 YLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA-FSE 367 (635)
T ss_dssp CEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB-CCC
T ss_pred cccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCC-ccc
Confidence 11222333444555555555554322 123344555555555555543322 2234555555555554422 222
Q ss_pred cCCCcccEEEccCccccc--ccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCC-chhccCCC
Q 003084 500 FYPLSIKQVHLSKNMLHG--QLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV-PIQLCRLN 576 (850)
Q Consensus 500 ~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~ 576 (850)
...++|+.+++++|.+.. ..+. .+..+.+|+.+++..+.... .+..+..+++|+.++++++...... +..+..++
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~~-~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~ 445 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKGCCSQ-SDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 445 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEEECCH-HHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCT
T ss_pred ccccccccchhhcccccccccccc-chhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccc
Confidence 334556666666665532 1222 44566777777777777653 3445667777888887777655443 34566777
Q ss_pred CCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCC
Q 003084 577 QLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLA 656 (850)
Q Consensus 577 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 656 (850)
+++.+++++|.+.+..+..+.... .++
T Consensus 446 ~l~~l~ls~n~l~~~~~~~~~~~~-----------------------------------------------------~L~ 472 (635)
T 4g8a_A 446 NLIYLDISHTHTRVAFNGIFNGLS-----------------------------------------------------SLE 472 (635)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCT-----------------------------------------------------TCC
T ss_pred ccccccccccccccccccccccch-----------------------------------------------------hhh
Confidence 788888888877776666655433 677
Q ss_pred eEEccCCcc-ccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCC
Q 003084 657 GLDLSCNKL-VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN 735 (850)
Q Consensus 657 ~L~Ls~n~l-~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N 735 (850)
.|++++|++ .+..|..|..+++|++|+|++|++++..|..|+++++|+.|+|++|++++..|..|..+++|++|++++|
T Consensus 473 ~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N 552 (635)
T 4g8a_A 473 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 552 (635)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTS
T ss_pred hhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCC
Confidence 788887764 3346677778888888888888888777777888888888888888888777777788888888888888
Q ss_pred cCcCCCCCCcccc-CCCCccccCCCCCCCCCCCC
Q 003084 736 NLSGKIPEWTAQF-ATFNKSSYDGNPFLCGLPLP 768 (850)
Q Consensus 736 ~l~~~~p~~~~~~-~~~~~~~~~~n~~~c~~~l~ 768 (850)
++++.+|..+..+ .+++.+.+++|||.|+|++.
T Consensus 553 ~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~ 586 (635)
T 4g8a_A 553 HIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 586 (635)
T ss_dssp CCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGH
T ss_pred cCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcH
Confidence 8887777766655 56777778888888888653
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.9e-44 Score=405.64 Aligned_cols=464 Identities=19% Similarity=0.163 Sum_probs=279.5
Q ss_pred cEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCCCCeE
Q 003084 111 KYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEEL 190 (850)
Q Consensus 111 ~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L 190 (850)
++|++++|.++. +|. .+. ++|++|++++|++.+..|.+|.++++|++|++++|.++ .+++..|.++++|++|
T Consensus 3 ~~l~ls~n~l~~----ip~-~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L 74 (520)
T 2z7x_B 3 FLVDRSKNGLIH----VPK-DLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYL 74 (520)
T ss_dssp CEEECTTSCCSS----CCC-SCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC-EEEGGGGTTCTTCCEE
T ss_pred ceEecCCCCccc----ccc-ccc--ccccEEECCCCcccccChhhccccccccEEecCCCccC-CcChHHhhcccCCCEE
Confidence 467888888765 543 333 67888888888887777777888888888888888887 4433377778888888
Q ss_pred ECcCCcCcCCCCcccccCCCCccEEEccCCccccccccccCCCCccceeEEEccCCCCCCcccCccccCCCCccEEEccC
Q 003084 191 RLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSH 270 (850)
Q Consensus 191 ~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~l~~ 270 (850)
++++|.++. .+.. .+++ |++|++++
T Consensus 75 ~Ls~N~l~~-lp~~---~l~~---------------------------------------------------L~~L~L~~ 99 (520)
T 2z7x_B 75 DLSHNKLVK-ISCH---PTVN---------------------------------------------------LKHLDLSF 99 (520)
T ss_dssp ECCSSCCCE-EECC---CCCC---------------------------------------------------CSEEECCS
T ss_pred ecCCCceee-cCcc---ccCC---------------------------------------------------ccEEeccC
Confidence 887776652 1111 2333 33333333
Q ss_pred Ccccc-cCchhhhhcCCCCcEEEccCCcCcCcCccCcCCCCCc--cEEEccCCcC--CcCCChhhhhcCCCCcEEEccCC
Q 003084 271 IKMIG-EFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRL--RFLDVSNNNF--QGHIPVEIGDILPSLVYFNISMN 345 (850)
Q Consensus 271 ~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L--~~L~Ls~n~l--~~~~~~~~~~~l~~L~~L~L~~n 345 (850)
|.+.+ .+|..+ +.+++|++|++++|.+.+ ..+..+++| +.|++++|.+ .+..|..+...-.....+++++|
T Consensus 100 N~l~~~~~p~~~-~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n 175 (520)
T 2z7x_B 100 NAFDALPICKEF-GNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175 (520)
T ss_dssp SCCSSCCCCGGG-GGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSS
T ss_pred Cccccccchhhh-ccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccC
Confidence 33333 233332 566667777777666654 233444444 6666666655 43444332221011223344444
Q ss_pred cCcccCc-ccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccC
Q 003084 346 ALDGSIP-SSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEI 424 (850)
Q Consensus 346 ~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 424 (850)
.+.+.++ ..+..+++|+.|++++|....... .+.+.++ .+..+++|+.|++++|.+.+..
T Consensus 176 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~------------------~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~ 236 (520)
T 2z7x_B 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCS------------------YFLSILA-KLQTNPKLSNLTLNNIETTWNS 236 (520)
T ss_dssp SCCCCCCCCCCTTCSEEEECCEEECCSTTTTH------------------HHHHHHH-GGGGCTTCCEEEEEEEEEEHHH
T ss_pred cchhhhhhhhhhcccceeeccccccccccccc------------------eeecchh-hhccccchhhccccccccCHHH
Confidence 4433222 233444445555554443000000 0222222 3444445555555444443211
Q ss_pred CcCC---CCCCCCcEEECcCCCCCCCCcccc-----cCCCCCcEEECCCCccccCcchhccCC---CCCCEEeccCCcCC
Q 003084 425 PQSL---SKCSSLKGLYLNNNNLSGKIPRWL-----GNLKGLQHIVMPKNHLEGPIPVEFCRL---DSLQILDISDNNIS 493 (850)
Q Consensus 425 ~~~~---~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~ls~n~l~ 493 (850)
+..+ ...++|++|++++|.+++.+|..+ ..+++|+.+++++|.+ ......+..+ .+|+.|++++|.+.
T Consensus 237 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~ 315 (520)
T 2z7x_B 237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMV 315 (520)
T ss_dssp HHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCC
T ss_pred HHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccc
Confidence 1000 012345555555555544444444 4445555555555544 1111222222 45566666665543
Q ss_pred CCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCcc--CCchh
Q 003084 494 GSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG--EVPIQ 571 (850)
Q Consensus 494 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~ 571 (850)
.. . .+..+++|++|++++|++++..|..+.++++|++|++++|++++ ..|..
T Consensus 316 ~~-----------------------~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 369 (520)
T 2z7x_B 316 HM-----------------------L---CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEM 369 (520)
T ss_dssp CC-----------------------C---CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHH
T ss_pred cc-----------------------c---chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHH
Confidence 21 1 12567888888888888888778888888899999999998886 44567
Q ss_pred ccCCCCCCEEeCCCCcCCc-cCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhh
Q 003084 572 LCRLNQLQLLDLSDNNLHG-LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGR 650 (850)
Q Consensus 572 l~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (850)
+..+++|++|++++|++.+ .++..+...
T Consensus 370 ~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l--------------------------------------------------- 398 (520)
T 2z7x_B 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWT--------------------------------------------------- 398 (520)
T ss_dssp HTTCTTCCEEECCSSCCBCCGGGCSCCCC---------------------------------------------------
T ss_pred HhhCCCCCEEECCCCcCCcccccchhccC---------------------------------------------------
Confidence 8888999999999998887 333334332
Q ss_pred hhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEE
Q 003084 651 VLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIF 730 (850)
Q Consensus 651 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 730 (850)
++|++|++++|++++..|..+. ++|+.|+|++|+++ .+|..+..+++|+.|++++|+++...+..+..+++|+.|
T Consensus 399 --~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 473 (520)
T 2z7x_B 399 --KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKI 473 (520)
T ss_dssp --TTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred --ccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEE
Confidence 3789999999999877776664 78999999999998 677777799999999999999985433448889999999
Q ss_pred EccCCcCcCCCCC
Q 003084 731 IVAYNNLSGKIPE 743 (850)
Q Consensus 731 ~l~~N~l~~~~p~ 743 (850)
++++|+++|.++.
T Consensus 474 ~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 474 WLHTNPWDCSCPR 486 (520)
T ss_dssp ECCSSCBCCCHHH
T ss_pred ECcCCCCcccCCc
Confidence 9999999987763
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.9e-44 Score=416.75 Aligned_cols=364 Identities=19% Similarity=0.246 Sum_probs=294.9
Q ss_pred CCcCcccCcccccCCCCCCEEEccCCcCCCC-----------------cchHHh-hcCCCCCEEEccCCccCcccccccc
Q 003084 344 MNALDGSIPSSFGNVIFLQFLDLSNNKLTGE-----------------IPDHLA-MCCVNLEFLSLSNNSLKGHIFSRIF 405 (850)
Q Consensus 344 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------------~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~ 405 (850)
.|.+++ +|..++++++|++|++++|.+++. +|..+. ..+++|++|++++|.+.+.+|..+.
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 466776 777888888888888888888753 676654 2478888888888888888888888
Q ss_pred CCCCCCeeeccCCc-Ccc-cCCcCCCCC------CCCcEEECcCCCCCCCCcc--cccCCCCCcEEECCCCccccCcchh
Q 003084 406 SLRNLRWLLLEGNH-FVG-EIPQSLSKC------SSLKGLYLNNNNLSGKIPR--WLGNLKGLQHIVMPKNHLEGPIPVE 475 (850)
Q Consensus 406 ~l~~L~~L~l~~n~-l~~-~~~~~~~~l------~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~ 475 (850)
++++|++|++++|+ +++ .+|..+..+ ++|++|++++|.++ .+|. .++.+++|++|++++|.+.+.+| .
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~ 348 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A 348 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence 88888888888887 776 667666654 78888888888887 6676 78888888888888888887777 7
Q ss_pred ccCCCCCCEEeccCCcCCCCCCCCc-CCCc-ccEEEccCcccccccCccccCCC--CCCcEEECcCCcCCCCcCcccc--
Q 003084 476 FCRLDSLQILDISDNNISGSLPSCF-YPLS-IKQVHLSKNMLHGQLKEGTFFNC--SSLVTLDLSYNYLNGSIPDWID-- 549 (850)
Q Consensus 476 ~~~l~~L~~L~ls~n~l~~~~~~~~-~~~~-L~~L~l~~n~~~~~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~~~-- 549 (850)
+..+++|+.|++++|.+. .+|..+ ..++ |+.|++++|.++ .+|. .+..+ ++|+.|++++|.+++..|..+.
T Consensus 349 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~ 425 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPN-IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425 (636)
T ss_dssp CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCS-CCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccch-hhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence 788888888888888887 444443 3666 888888888887 5665 55554 4899999999999999888888
Q ss_pred -----CCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCC
Q 003084 550 -----GLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGP 624 (850)
Q Consensus 550 -----~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (850)
.+++|+.|++++|++++..+..+..+++|++|++++|+++.+++..+....
T Consensus 426 ~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~------------------------ 481 (636)
T 4eco_A 426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN------------------------ 481 (636)
T ss_dssp CSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT------------------------
T ss_pred ccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccc------------------------
Confidence 788999999999999966666677899999999999999965555443321
Q ss_pred CCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCcccc--CCCCCCEEECcCCcCCccCcccCCCCCC
Q 003084 625 QGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIG--NLTRIQTLNLSHNNLTGTIPLTFSNLRH 702 (850)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 702 (850)
.....+++|++|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++
T Consensus 482 ----------------------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~ 537 (636)
T 4eco_A 482 ----------------------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSST 537 (636)
T ss_dssp ----------------------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSS
T ss_pred ----------------------ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCC
Confidence 00011348999999999999 6888887 99999999999999997 8999999999
Q ss_pred CCEEEC------cCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCccccCCCCccccCCCCCCCC
Q 003084 703 IESLDL------SYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCG 764 (850)
Q Consensus 703 L~~L~L------s~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~ 764 (850)
|+.|++ ++|++.+.+|..+..+++|+.|++++|++ +.+|..+. +.+..+.+++||+.|-
T Consensus 538 L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 538 LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp CCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred CCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence 999999 56888999999999999999999999999 67888543 7889999999999884
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.1e-43 Score=409.15 Aligned_cols=380 Identities=21% Similarity=0.244 Sum_probs=292.4
Q ss_pred CcCCcCCChhhhhcCCCCcEEEccCCcCcc-----------------cCccccc--CCCCCCEEEccCCcCCCCcchHHh
Q 003084 320 NNFQGHIPVEIGDILPSLVYFNISMNALDG-----------------SIPSSFG--NVIFLQFLDLSNNKLTGEIPDHLA 380 (850)
Q Consensus 320 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~ 380 (850)
|.+++ +|..+.. +++|++|++++|.+++ .+|..++ ++++|++|++++|.+.+.+|..+.
T Consensus 435 N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 435 NRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp CEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred Ccccc-hhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence 66665 7766554 7788888888888876 3777776 888888888888888778886554
Q ss_pred hcCCCCCEEEccCCc-cCc-cccccccCC-------CCCCeeeccCCcCcccCCc--CCCCCCCCcEEECcCCCCCCCCc
Q 003084 381 MCCVNLEFLSLSNNS-LKG-HIFSRIFSL-------RNLRWLLLEGNHFVGEIPQ--SLSKCSSLKGLYLNNNNLSGKIP 449 (850)
Q Consensus 381 ~~l~~L~~L~l~~n~-l~~-~~~~~~~~l-------~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~ 449 (850)
.+++|+.|++++|+ +.+ .+|..+..+ ++|++|++++|.+. .+|. .+.++++|+.|++++|.++ .+|
T Consensus 513 -~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp 589 (876)
T 4ecn_A 513 -DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE 589 (876)
T ss_dssp -GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred -CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence 48888888888887 776 666655544 48888888888888 6777 7888888888888888887 666
Q ss_pred ccccCCCCCcEEECCCCccccCcchhccCCCC-CCEEeccCCcCCCCCCCCcCC---CcccEEEccCcccccccCcc--c
Q 003084 450 RWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDS-LQILDISDNNISGSLPSCFYP---LSIKQVHLSKNMLHGQLKEG--T 523 (850)
Q Consensus 450 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~ls~n~l~~~~~~~~~~---~~L~~L~l~~n~~~~~~~~~--~ 523 (850)
.+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .+|..+.. ++|+.|++++|.+.+.++.- .
T Consensus 590 -~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~ 666 (876)
T 4ecn_A 590 -AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666 (876)
T ss_dssp -CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred -hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhh
Confidence 7888888888888888888 67777888888 888888888887 55655542 34888888888887765431 1
Q ss_pred cC--CCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchh-ccC-------CCCCCEEeCCCCcCCccCC
Q 003084 524 FF--NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQ-LCR-------LNQLQLLDLSDNNLHGLIP 593 (850)
Q Consensus 524 ~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~-------l~~L~~L~Ls~n~l~~~~~ 593 (850)
+. .+++|+.|++++|.++...+..+..+++|+.|+|++|++. .+|.. +.. +++|+.|+|++|+++. +|
T Consensus 667 l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp 744 (876)
T 4ecn_A 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LS 744 (876)
T ss_dssp TTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-CC
T ss_pred hccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCcc-ch
Confidence 12 3458999999999999554445568999999999999998 44443 332 2389999999999884 44
Q ss_pred CCcc--cCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCc
Q 003084 594 SCFD--NTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPP 671 (850)
Q Consensus 594 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 671 (850)
..+. . +++|+.|+|++|++++ +|.
T Consensus 745 ~~l~~~~-----------------------------------------------------l~~L~~L~Ls~N~L~~-lp~ 770 (876)
T 4ecn_A 745 DDFRATT-----------------------------------------------------LPYLSNMDVSYNCFSS-FPT 770 (876)
T ss_dssp GGGSTTT-----------------------------------------------------CTTCCEEECCSSCCSS-CCC
T ss_pred HHhhhcc-----------------------------------------------------CCCcCEEEeCCCCCCc-cch
Confidence 4432 2 3489999999999997 788
Q ss_pred cccCCCCCCEEECcC------CcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCc
Q 003084 672 QIGNLTRIQTLNLSH------NNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWT 745 (850)
Q Consensus 672 ~~~~l~~L~~L~Ls~------N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~ 745 (850)
.+..+++|+.|+|++ |++.+.+|..|..+++|+.|+|++|++ +.+|..+. ++|+.|++++|++....+..+
T Consensus 771 ~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~ 847 (876)
T 4ecn_A 771 QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSV 847 (876)
T ss_dssp GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGG
T ss_pred hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHc
Confidence 899999999999976 888889999999999999999999999 58888765 699999999999987666655
Q ss_pred cccCCCCccccCCCCCCC--CCC
Q 003084 746 AQFATFNKSSYDGNPFLC--GLP 766 (850)
Q Consensus 746 ~~~~~~~~~~~~~n~~~c--~~~ 766 (850)
..........+.+|+..+ +||
T Consensus 848 ~~~~~~~~~~L~~n~~~~I~gC~ 870 (876)
T 4ecn_A 848 CPYIEAGMYVLLYDKTQDIRGCD 870 (876)
T ss_dssp HHHHHTTCCEEECCTTSEEESCG
T ss_pred cccccchheeecCCCccccCCCC
Confidence 444444555666666555 665
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.8e-41 Score=392.86 Aligned_cols=539 Identities=21% Similarity=0.186 Sum_probs=380.9
Q ss_pred cEEeCCCCcCCCcccCCcCCCCCcccEEecccCCcccccchhhHhhhcCCCCcEEEccCCCCCCCCCccCCcCCCCCCCC
Q 003084 59 KNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHL 138 (850)
Q Consensus 59 ~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L 138 (850)
++.+-++..++ .+|. .+. +++++|+| ++|.+++..+..|.+ +++|++|+|++|.|++ +++++|.++++|
T Consensus 34 ~~~~c~~~~l~-~vP~-~lp--~~~~~LdL--s~N~i~~l~~~~f~~-l~~L~~L~Ls~N~i~~----i~~~~f~~L~~L 102 (635)
T 4g8a_A 34 ITYQCMELNFY-KIPD-NLP--FSTKNLDL--SFNPLRHLGSYSFFS-FPELQVLDLSRCEIQT----IEDGAYQSLSHL 102 (635)
T ss_dssp TEEECTTSCCS-SCCS-SSC--TTCCEEEC--TTSCCCEECTTTTTT-CTTCCEEECTTCCCCE----ECTTTTTTCTTC
T ss_pred CEEECCCCCcC-ccCC-CCC--cCCCEEEe--eCCCCCCCCHHHHhC-CCCCCEEECCCCcCCC----cChhHhcCCCCC
Confidence 45566666666 4554 343 48999999 889998887788888 9999999999999976 777889999999
Q ss_pred CEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCCCCeEECcCCcCcCCCCcccccCCCCccEEEcc
Q 003084 139 QELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAK 218 (850)
Q Consensus 139 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~ 218 (850)
++|+|++|++++..+.+|.++++|++|++++|.++ .++...|+++++|++|++++|.+........+..+++|+.|+++
T Consensus 103 ~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 181 (635)
T 4g8a_A 103 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 181 (635)
T ss_dssp CEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred CEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc
Confidence 99999999999888889999999999999999998 77776899999999999999998754444556778888888888
Q ss_pred CCccccccccccCCCCccceeEEEccCCCCCCcccCccccCCCCccEEEccCCcccccCchhhhhcCCCCcEEEccCCcC
Q 003084 219 NNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSL 298 (850)
Q Consensus 219 ~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 298 (850)
+|++....... +..+.+ .......++++.|.+
T Consensus 182 ~N~l~~~~~~~---------------------------l~~L~~---------------------l~~~~~~~~ls~n~l 213 (635)
T 4g8a_A 182 SNKIQSIYCTD---------------------------LRVLHQ---------------------MPLLNLSLDLSLNPM 213 (635)
T ss_dssp SSCCCEECGGG---------------------------GHHHHT---------------------CTTCCCEEECTTCCC
T ss_pred Ccccccccccc---------------------------ccchhh---------------------hhhhhhhhhcccCcc
Confidence 87765432211 110000 001122344444444
Q ss_pred cCcCccCcCCCCCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCc------CcccCcccccCCCCCCEEEccCCcCC
Q 003084 299 AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNA------LDGSIPSSFGNVIFLQFLDLSNNKLT 372 (850)
Q Consensus 299 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~n~l~ 372 (850)
....+..+ ....++.+++++|.....++...+..++.++...+..+. +.......+..+..+...++..+...
T Consensus 214 ~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~ 292 (635)
T 4g8a_A 214 NFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 292 (635)
T ss_dssp CEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCC
T ss_pred cccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhc
Confidence 44332222 233456677776655444444445556666665554322 22223334455555666655554332
Q ss_pred CCcc--hHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcc
Q 003084 373 GEIP--DHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPR 450 (850)
Q Consensus 373 ~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 450 (850)
.... ...+..+.+++.+.+.++.+.... .+....+++.|++.+|.+....+. .++.|+.+++..|..... .
T Consensus 293 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~--~ 365 (635)
T 4g8a_A 293 YYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA--F 365 (635)
T ss_dssp SCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB--C
T ss_pred ccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCC--c
Confidence 1111 112234567778887777765432 345566778888888777644332 345677777777776532 2
Q ss_pred cccCCCCCcEEECCCCcccc--CcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCC
Q 003084 451 WLGNLKGLQHIVMPKNHLEG--PIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCS 528 (850)
Q Consensus 451 ~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 528 (850)
....+++|+.+++++|.+.. ..+..+..+.+|+.++++.+..... +. .+..++
T Consensus 366 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~------------------------~~-~~~~l~ 420 (635)
T 4g8a_A 366 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM------------------------SS-NFLGLE 420 (635)
T ss_dssp CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE------------------------CS-CCTTCT
T ss_pred ccccccccccchhhccccccccccccchhhhhhhhhhhccccccccc------------------------cc-cccccc
Confidence 33456777777777776643 2344555666777777776655422 22 456677
Q ss_pred CCcEEECcCCcCCCCc-CccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcC-CccCCCCcccCccccccC
Q 003084 529 SLVTLDLSYNYLNGSI-PDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNL-HGLIPSCFDNTTLHESYN 606 (850)
Q Consensus 529 ~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l-~~~~~~~~~~~~~~~~~~ 606 (850)
+|+.++++.+...... +..|..+++++.++++.|.+.+..+..+..+++|+.|++++|.+ .+..|..|..++
T Consensus 421 ~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~------ 494 (635)
T 4g8a_A 421 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR------ 494 (635)
T ss_dssp TCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT------
T ss_pred cccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcc------
Confidence 7778887776655443 34567788888888888888877777888888888888888864 344566665533
Q ss_pred CCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcC
Q 003084 607 NNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSH 686 (850)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 686 (850)
+|++|||++|++++..|..|.++++|++|+|++
T Consensus 495 -----------------------------------------------~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~ 527 (635)
T 4g8a_A 495 -----------------------------------------------NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527 (635)
T ss_dssp -----------------------------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred -----------------------------------------------ccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence 799999999999988899999999999999999
Q ss_pred CcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcC-CCCCEEEccCCcCcCCCCC
Q 003084 687 NNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL-NTLAIFIVAYNNLSGKIPE 743 (850)
Q Consensus 687 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~l~~N~l~~~~p~ 743 (850)
|+|++..|..|+.+++|+.|||++|++++..|..+..+ ++|++|++++|++.|.+..
T Consensus 528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 99999999999999999999999999999999999998 6899999999999998763
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.8e-43 Score=395.61 Aligned_cols=440 Identities=20% Similarity=0.200 Sum_probs=359.7
Q ss_pred CCccEEEccCCcccccCchhhhhcCCCCcEEEccCCcCcCcCccCcCCCCCccEEEccCCcCCcCCChhhhhcCCCCcEE
Q 003084 261 HELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYF 340 (850)
Q Consensus 261 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 340 (850)
+++++|++++|.+.+..|.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .+|.. .+++|++|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L 95 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSD-ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHL 95 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHH-HTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEE
T ss_pred ccccEEECCCCcccccChhh-ccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEE
Confidence 67888888888877655555 478999999999999999888888999999999999999998 67766 58899999
Q ss_pred EccCCcCcc-cCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCC--CEEEccCCcc--CccccccccCCC-CCCeee
Q 003084 341 NISMNALDG-SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNL--EFLSLSNNSL--KGHIFSRIFSLR-NLRWLL 414 (850)
Q Consensus 341 ~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~l~~n~l--~~~~~~~~~~l~-~L~~L~ 414 (850)
++++|.+++ .+|..++.+++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..|..+..+. +...++
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~ 171 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEE
T ss_pred eccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccccccccccccccccccceEEEE
Confidence 999999987 478899999999999999999874 234457888 9999999999 777777776655 344677
Q ss_pred ccCCcCcccCCc-CCCCCCCCcEEECcCCC-------CCCCCcccccCCCCCcEEECCCCccccCcchhcc---CCCCCC
Q 003084 415 LEGNHFVGEIPQ-SLSKCSSLKGLYLNNNN-------LSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFC---RLDSLQ 483 (850)
Q Consensus 415 l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~l~~L~ 483 (850)
+++|.+.+..+. .+..+++|+.+++++|. +.+.++ .+..+++|+.|++++|.+.+..+..+. ..++|+
T Consensus 172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred eccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 888888765544 67789999999999987 444444 678899999999999888754322221 246899
Q ss_pred EEeccCCcCCCCCCCCc------CCCcccEEEccCcccccccCccccCCC---CCCcEEECcCCcCCCCcCccccCCCCC
Q 003084 484 ILDISDNNISGSLPSCF------YPLSIKQVHLSKNMLHGQLKEGTFFNC---SSLVTLDLSYNYLNGSIPDWIDGLSQL 554 (850)
Q Consensus 484 ~L~ls~n~l~~~~~~~~------~~~~L~~L~l~~n~~~~~~~~~~~~~~---~~L~~L~L~~n~l~~~~~~~~~~l~~L 554 (850)
.|++++|.+.+.+|..+ .++.|+.+++++|.+ .+|...+..+ ++|+.|++++|.+.... .+..+++|
T Consensus 251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L 326 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPF 326 (520)
T ss_dssp EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCC
T ss_pred EEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcc
Confidence 99999999998777765 377899999999988 4553233333 67999999999987542 23689999
Q ss_pred CEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCcc--CCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhh
Q 003084 555 SHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL--IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKI 632 (850)
Q Consensus 555 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (850)
++|++++|++++..|..+..+++|++|++++|++++. .|..+..
T Consensus 327 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~---------------------------------- 372 (520)
T 2z7x_B 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ---------------------------------- 372 (520)
T ss_dssp CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT----------------------------------
T ss_pred cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh----------------------------------
Confidence 9999999999988899999999999999999999863 2233333
Q ss_pred hhhhhhccccchhcchhhhhccCCeEEccCCccccCCCc-cccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCC
Q 003084 633 LEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPP-QIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 711 (850)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 711 (850)
+++|++|++++|++++.+|. .+..+++|+.|++++|++++..|..+. ++|+.|++++|
T Consensus 373 -------------------l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N 431 (520)
T 2z7x_B 373 -------------------MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN 431 (520)
T ss_dssp -------------------CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS
T ss_pred -------------------CCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC
Confidence 34899999999999985665 488999999999999999988887765 79999999999
Q ss_pred cCcccCChhhhcCCCCCEEEccCCcCcCCCCCCccccCCCCccccCCCCCCCCCCCCCC
Q 003084 712 KLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPIC 770 (850)
Q Consensus 712 ~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~~c 770 (850)
+++ .+|..+..+++|+.|++++|+++...+..+..+..+..+.+++||+.|+|++.|.
T Consensus 432 ~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 489 (520)
T 2z7x_B 432 KIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 489 (520)
T ss_dssp CCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred ccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHH
Confidence 999 7888888999999999999999954444477888999999999999999986543
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.3e-42 Score=401.24 Aligned_cols=378 Identities=19% Similarity=0.240 Sum_probs=241.0
Q ss_pred CcccccCchhhhhcCCCCcEEEccCCcCcC-----------------cCccCcC--CCCCccEEEccCCcCCcCCChhhh
Q 003084 271 IKMIGEFPNWLLENNTKLEFLYLVNDSLAG-----------------PFRLPIH--SHKRLRFLDVSNNNFQGHIPVEIG 331 (850)
Q Consensus 271 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-----------------~~~~~~~--~~~~L~~L~Ls~n~l~~~~~~~~~ 331 (850)
|.+.+ +|..+ +.+++|+.|++++|.+.+ .+|..+. .+++|+.|++++|.+.+.+|..+.
T Consensus 435 N~L~~-IP~~l-~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 435 NRITF-ISKAI-QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp CEEEE-ECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred Ccccc-hhHHH-hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence 34444 45442 455666666666666655 3566655 777777777777777767775554
Q ss_pred hcCCCCcEEEccCCc-Ccc-cCcccccCCC-------CCCEEEccCCcCCCCcch-HHhhcCCCCCEEEccCCccCcccc
Q 003084 332 DILPSLVYFNISMNA-LDG-SIPSSFGNVI-------FLQFLDLSNNKLTGEIPD-HLAMCCVNLEFLSLSNNSLKGHIF 401 (850)
Q Consensus 332 ~~l~~L~~L~L~~n~-l~~-~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~ 401 (850)
. +++|++|++++|+ +++ .+|..++.++ +|++|++++|.++ .+|. ..+..+++|+.|++++|.+. .+|
T Consensus 513 ~-L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp 589 (876)
T 4ecn_A 513 D-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE 589 (876)
T ss_dssp G-CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred C-CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence 4 6777777777776 665 5665544443 7777788777777 7776 23345777788888777777 555
Q ss_pred ccccCCCCCCeeeccCCcCcccCCcCCCCCCC-CcEEECcCCCCCCCCcccccCCCC--CcEEECCCCccccCcchhc--
Q 003084 402 SRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSS-LKGLYLNNNNLSGKIPRWLGNLKG--LQHIVMPKNHLEGPIPVEF-- 476 (850)
Q Consensus 402 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~~-- 476 (850)
.+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.++ .+|..+..++. |+.|++++|++.+.+|...
T Consensus 590 -~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~ 666 (876)
T 4ecn_A 590 -AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666 (876)
T ss_dssp -CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred -hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhh
Confidence 6777777888888888777 66666777777 888888888777 56666655543 7788888887776544221
Q ss_pred -c--CCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCcccc----
Q 003084 477 -C--RLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWID---- 549 (850)
Q Consensus 477 -~--~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~---- 549 (850)
. .+++|+.|++++|.+.. + +...+..+++|+.|+|++|+++.+.+..+.
T Consensus 667 l~~~~~~~L~~L~Ls~N~L~~-l-----------------------p~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~ 722 (876)
T 4ecn_A 667 MDDYKGINASTVTLSYNEIQK-F-----------------------PTELFATGSPISTIILSNNLMTSIPENSLKPKDG 722 (876)
T ss_dssp TTTCCCCCEEEEECCSSCCCS-C-----------------------CHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTS
T ss_pred hccccCCCcCEEEccCCcCCc-c-----------------------CHHHHccCCCCCEEECCCCcCCccChHHhccccc
Confidence 1 23466677777766652 2 221223344444444444444422211221
Q ss_pred ---CCCCCCEEECcCCcCccCCchhcc--CCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCC
Q 003084 550 ---GLSQLSHLNLAHNNLEGEVPIQLC--RLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGP 624 (850)
Q Consensus 550 ---~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (850)
++++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+
T Consensus 723 ~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L------------------------- 775 (876)
T 4ecn_A 723 NYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNS------------------------- 775 (876)
T ss_dssp CCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGC-------------------------
T ss_pred cccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcC-------------------------
Confidence 1124555555555554 3344443 45555555555555544 23222221
Q ss_pred CCchhhhhhhhhhhccccchhcchhhhhccCCeEEcc------CCccccCCCccccCCCCCCEEECcCCcCCccCcccCC
Q 003084 625 QGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLS------CNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFS 698 (850)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls------~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 698 (850)
++|+.|+|+ +|++.+.+|..|.++++|+.|+|++|++ +.+|..+.
T Consensus 776 ----------------------------~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~ 826 (876)
T 4ecn_A 776 ----------------------------SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT 826 (876)
T ss_dssp ----------------------------TTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred ----------------------------CCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc
Confidence 245555554 4888889999999999999999999999 57787766
Q ss_pred CCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCc
Q 003084 699 NLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 738 (850)
Q Consensus 699 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 738 (850)
++|+.|||++|++....+..+.....+..+.+.+|++.
T Consensus 827 --~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 827 --PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp --SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred --CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence 69999999999998877777777666777778877665
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.2e-40 Score=381.48 Aligned_cols=462 Identities=19% Similarity=0.183 Sum_probs=281.5
Q ss_pred CCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCC
Q 003084 107 MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTS 186 (850)
Q Consensus 107 l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~ 186 (850)
+...++++++++.++. +|. .+. ++|++|++++|++.+..+.+|.++++|++|++++|.++ .++...|.++++
T Consensus 30 ~~~~~~l~ls~~~L~~----ip~-~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~ 101 (562)
T 3a79_B 30 NELESMVDYSNRNLTH----VPK-DLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQD 101 (562)
T ss_dssp ---CCEEECTTSCCCS----CCT-TSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTT
T ss_pred cCCCcEEEcCCCCCcc----CCC-CCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCC
Confidence 4455778888887765 443 222 67888888888887777777888888888888888877 444336777788
Q ss_pred CCeEECcCCcCcCCCCcccccCCCCccEEEccCCccccccccccCCCCccceeEEEccCCCCCCcccCccccCCCCccEE
Q 003084 187 IEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEA 266 (850)
Q Consensus 187 L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L 266 (850)
|++|++++|.++. .+.. .+++|+.|++++|
T Consensus 102 L~~L~Ls~N~l~~-lp~~---~l~~L~~L~Ls~N---------------------------------------------- 131 (562)
T 3a79_B 102 LEYLDVSHNRLQN-ISCC---PMASLRHLDLSFN---------------------------------------------- 131 (562)
T ss_dssp CCEEECTTSCCCE-ECSC---CCTTCSEEECCSS----------------------------------------------
T ss_pred CCEEECCCCcCCc-cCcc---ccccCCEEECCCC----------------------------------------------
Confidence 8888887777652 2211 3344444444333
Q ss_pred EccCCcccc-cCchhhhhcCCCCcEEEccCCcCcCcCccCcCCCCCc--cEEEccCCcC--CcCCChhhhhcCC-CCcEE
Q 003084 267 ELSHIKMIG-EFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRL--RFLDVSNNNF--QGHIPVEIGDILP-SLVYF 340 (850)
Q Consensus 267 ~l~~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L--~~L~Ls~n~l--~~~~~~~~~~~l~-~L~~L 340 (850)
.+.+ ..|.. ++.+++|++|++++|.+.+. .+..+++| +.|++++|.+ ++..|..+.. +. ..-.+
T Consensus 132 -----~l~~l~~p~~-~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~-l~~~~l~l 201 (562)
T 3a79_B 132 -----DFDVLPVCKE-FGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQI-PNTTVLHL 201 (562)
T ss_dssp -----CCSBCCCCGG-GGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEE-CCEEEEEE
T ss_pred -----CccccCchHh-hcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccc-cCcceEEE
Confidence 3322 12222 35677777777777776652 23333333 7777777766 5444433322 11 11134
Q ss_pred EccCCcCcccCcc-cccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCc
Q 003084 341 NISMNALDGSIPS-SFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNH 419 (850)
Q Consensus 341 ~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 419 (850)
++++|.+.+.++. .+..+++|+.+++++|...-. .+. .....+..+++|+.+++.++.
T Consensus 202 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--------------------~l~-~~~~~l~~l~~L~~L~L~~~~ 260 (562)
T 3a79_B 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ--------------------RLM-TFLSELTRGPTLLNVTLQHIE 260 (562)
T ss_dssp EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH--------------------HHH-HHHHHHHSCSSCEEEEEEEEE
T ss_pred EecCccchhhhhhhcccccceEEEecccccccccc--------------------hHH-HHHHHHhccCcceEEEecCCc
Confidence 4555554433322 334455555555555531100 000 011123334444444444333
Q ss_pred Cccc----CCcCCCCCCCCcEEECcCCCCCCCCcccc-----cCCCCCcEEECCCCccccCcc-hhcc---CCCCCCEEe
Q 003084 420 FVGE----IPQSLSKCSSLKGLYLNNNNLSGKIPRWL-----GNLKGLQHIVMPKNHLEGPIP-VEFC---RLDSLQILD 486 (850)
Q Consensus 420 l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~-~~~~---~l~~L~~L~ 486 (850)
+.+. .+..+ ..++|++|++++|.+++.+|..+ ..++.|+.+++..+.+ ..| ..+. ...+|+.|+
T Consensus 261 l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~ 337 (562)
T 3a79_B 261 TTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLS 337 (562)
T ss_dssp ECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEE
T ss_pred CcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEE
Confidence 3211 00111 12255555555555554444433 3333333333333333 111 1111 124566666
Q ss_pred ccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCcc
Q 003084 487 ISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG 566 (850)
Q Consensus 487 ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 566 (850)
+++|.+.. .. ....+++|+.|++++|++++..|..+.++++|+.|++++|++++
T Consensus 338 l~~n~~~~-----------------------~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 391 (562)
T 3a79_B 338 ISDTPFIH-----------------------MV---CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN 391 (562)
T ss_dssp EESSCCCC-----------------------CC---CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCB
T ss_pred ccCCCccc-----------------------cc---CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCC
Confidence 66665431 11 12567889999999999988888888899999999999999886
Q ss_pred CC--chhccCCCCCCEEeCCCCcCCc-cCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccc
Q 003084 567 EV--PIQLCRLNQLQLLDLSDNNLHG-LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNI 643 (850)
Q Consensus 567 ~~--~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (850)
.. |..+..+++|++|++++|++++ .++..+...
T Consensus 392 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l-------------------------------------------- 427 (562)
T 3a79_B 392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA-------------------------------------------- 427 (562)
T ss_dssp TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCC--------------------------------------------
T ss_pred cccchhhhcCCCCCCEEECCCCcCCCccChhhhcCc--------------------------------------------
Confidence 43 4568889999999999999887 433345443
Q ss_pred hhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChh-hh
Q 003084 644 AYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQ-LV 722 (850)
Q Consensus 644 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~ 722 (850)
++|++|++++|++++..|..+. ++|+.|+|++|+++ .+|..+..+++|+.|++++|++++ +|.. +.
T Consensus 428 ---------~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~ 494 (562)
T 3a79_B 428 ---------ESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFD 494 (562)
T ss_dssp ---------TTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTT
T ss_pred ---------ccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHh
Confidence 3799999999999877666554 78999999999998 567766799999999999999994 5554 89
Q ss_pred cCCCCCEEEccCCcCcCCCCC
Q 003084 723 DLNTLAIFIVAYNNLSGKIPE 743 (850)
Q Consensus 723 ~l~~L~~L~l~~N~l~~~~p~ 743 (850)
.+++|+.|++++|++.|.+|.
T Consensus 495 ~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 495 RLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp TCTTCCCEECCSCCBCCCHHH
T ss_pred cCCCCCEEEecCCCcCCCcch
Confidence 999999999999999988775
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.8e-39 Score=362.38 Aligned_cols=372 Identities=21% Similarity=0.230 Sum_probs=289.2
Q ss_pred cEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEcc
Q 003084 313 RFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLS 392 (850)
Q Consensus 313 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~ 392 (850)
+.++.+++.++ .+|. . .+++++|++++|.+++..|..|.++++|++|++++|.+.+.++...+.++++|++|+++
T Consensus 13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 35677777776 6665 2 36888888888888877788888889999999999888767777777778899999999
Q ss_pred CCccCccccccccCCCCCCeeeccCCcCcccCCc--CCCCCCCCcEEECcCCCCCCCCccc-ccCCCCCcEEECCCCccc
Q 003084 393 NNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQ--SLSKCSSLKGLYLNNNNLSGKIPRW-LGNLKGLQHIVMPKNHLE 469 (850)
Q Consensus 393 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~ 469 (850)
+|.+.+..|..|.++++|++|++++|.+.+..+. .+..+++|++|++++|.+++..|.. +.++++|++|++++|.+.
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 9988888888888899999999999988864443 3888889999999999988776765 788899999999999888
Q ss_pred cCcchhccCC--CCCCEEeccCCcCCCCCCCCc---------CCCcccEEEccCcccccccCccccC---CCCCCcEEEC
Q 003084 470 GPIPVEFCRL--DSLQILDISDNNISGSLPSCF---------YPLSIKQVHLSKNMLHGQLKEGTFF---NCSSLVTLDL 535 (850)
Q Consensus 470 ~~~~~~~~~l--~~L~~L~ls~n~l~~~~~~~~---------~~~~L~~L~l~~n~~~~~~~~~~~~---~~~~L~~L~L 535 (850)
+..+..+..+ .+|+.|++++|.+.+..+..+ ..++|+.|++++|.+.+..+. .+. ..++|+.|++
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK-RFFDAIAGTKIQSLIL 246 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHH-HHHHHTTTCCEEEEEC
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchh-hhhccccccceeeEee
Confidence 8777777665 678889999988876544332 346788888888887765554 222 2377888888
Q ss_pred cCCcCCCC----------cCccccC--CCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCcccc
Q 003084 536 SYNYLNGS----------IPDWIDG--LSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHE 603 (850)
Q Consensus 536 ~~n~l~~~----------~~~~~~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~ 603 (850)
++|...+. .+..+.+ .++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..+..|..+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--- 323 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT--- 323 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT---
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc---
Confidence 88755432 1122222 35788888888888877788888888888888888888877776665543
Q ss_pred ccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEE
Q 003084 604 SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLN 683 (850)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 683 (850)
+|++|++++|.+++..|..|.++++|++|+
T Consensus 324 --------------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 324 --------------------------------------------------HLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp --------------------------------------------------TCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred --------------------------------------------------cCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 788888888888877777888888888888
Q ss_pred CcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCC
Q 003084 684 LSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 743 (850)
Q Consensus 684 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~ 743 (850)
|++|++++..|..|..+++|+.|++++|++++..+..+..+++|+.|++++|+++|.+|.
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 888888877788888888888888888888876666778888888888888888888874
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.5e-38 Score=364.08 Aligned_cols=463 Identities=19% Similarity=0.195 Sum_probs=286.8
Q ss_pred CCCCcEEeCCCCcCCCcccCCcCCCCCcccEEecccCCcccccchhhHhhhcCCCCcEEEccCCCCCCCCCccCCcCCCC
Q 003084 55 FPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCP 134 (850)
Q Consensus 55 ~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~ls~n~i~~~~~~i~~~~l~~ 134 (850)
+...+++++++|.+++ +|. .+. ++|++|++ ++|.+.+..+..+.. +++|++|++++|.+++ ++++.|.+
T Consensus 30 ~~~~~~l~ls~~~L~~-ip~-~~~--~~L~~L~L--s~N~i~~~~~~~~~~-l~~L~~L~Ls~N~l~~----~~~~~~~~ 98 (562)
T 3a79_B 30 NELESMVDYSNRNLTH-VPK-DLP--PRTKALSL--SQNSISELRMPDISF-LSELRVLRLSHNRIRS----LDFHVFLF 98 (562)
T ss_dssp ---CCEEECTTSCCCS-CCT-TSC--TTCCEEEC--CSSCCCCCCGGGTTT-CTTCCEEECCSCCCCE----ECTTTTTT
T ss_pred cCCCcEEEcCCCCCcc-CCC-CCC--CCcCEEEC--CCCCccccChhhhcc-CCCccEEECCCCCCCc----CCHHHhCC
Confidence 4556899999998884 564 333 78888888 888888777777777 8888888888888875 65567888
Q ss_pred CCCCCEEEccCCccccccCccccCCCCCCEEECCCCcCcCCCCc-ccccCCCCCCeEECcCCcCcCCCCcccccCCCCcc
Q 003084 135 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISS-SPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLK 213 (850)
Q Consensus 135 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~ 213 (850)
+++|++|++++|+++ .+|.. .+++|++|++++|.++ .++. ..|+++++|++|++++|.+.. .....+.++ +|+
T Consensus 99 l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~-~l~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~L-~L~ 172 (562)
T 3a79_B 99 NQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQ-LDLLPVAHL-HLS 172 (562)
T ss_dssp CTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCS-BCCCCGGGGGCTTCCEEEEECSBCCT-TTTGGGTTS-CEE
T ss_pred CCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCcc-ccCchHhhcccCcccEEecCCCcccc-Cchhhhhhc-eee
Confidence 888888888888888 44544 7888888888888887 4431 278888888888888888774 222233333 338
Q ss_pred EEEccCCcc--ccccccccCCCCccceeEEEccCCCCCCcccCccccCCC-CccEEEccCCcccccCchhhhhcCCCCcE
Q 003084 214 IFDAKNNEI--NGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQH-ELKEAELSHIKMIGEFPNWLLENNTKLEF 290 (850)
Q Consensus 214 ~L~l~~n~~--~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 290 (850)
.|++++|.+ ..... ..+..+. ..-.++++.+.+.+.++...+..+++|+.
T Consensus 173 ~L~L~~n~l~~~~~~~---------------------------~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~ 225 (562)
T 3a79_B 173 CILLDLVSYHIKGGET---------------------------ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225 (562)
T ss_dssp EEEEEESSCCCCSSSC---------------------------CEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEE
T ss_pred EEEeecccccccccCc---------------------------ccccccCcceEEEEecCccchhhhhhhcccccceEEE
Confidence 888877776 33222 1111111 01123444444444444444445555566
Q ss_pred EEccCCcCcC----cCccCcCCCCCccEEEccCCcCCcCCChhhh--hcCCCCcEEEccCCcCcccCcccc-----cCCC
Q 003084 291 LYLVNDSLAG----PFRLPIHSHKRLRFLDVSNNNFQGHIPVEIG--DILPSLVYFNISMNALDGSIPSSF-----GNVI 359 (850)
Q Consensus 291 L~L~~~~~~~----~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~ 359 (850)
+++++|.... .....+..+++++.++++++.+.+....... ...++|++|++++|.+++.+|..+ ..++
T Consensus 226 L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~ 305 (562)
T 3a79_B 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALK 305 (562)
T ss_dssp EEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCC
T ss_pred ecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccch
Confidence 6655553110 0111234556666666666655421111110 113478888888888777777766 5666
Q ss_pred CCCEEEccCCcCCCCcchHHhhc---CCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcE
Q 003084 360 FLQFLDLSNNKLTGEIPDHLAMC---CVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKG 436 (850)
Q Consensus 360 ~L~~L~L~~n~l~~~~~~~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 436 (850)
.|+.++++.+.+ .+|...... ..+|++|++++|.+.... ....+++|++|++++|.+.+..|..+..+++|++
T Consensus 306 ~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 381 (562)
T 3a79_B 306 SLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQT 381 (562)
T ss_dssp EEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCE
T ss_pred heehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCE
Confidence 666666666666 455322211 256777777777664322 1145666666666666666656666666666666
Q ss_pred EECcCCCCCCCC--cccccCCCCCcEEECCCCcccc-CcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCc
Q 003084 437 LYLNNNNLSGKI--PRWLGNLKGLQHIVMPKNHLEG-PIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKN 513 (850)
Q Consensus 437 L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n 513 (850)
|++++|.+++.. |..+..+++|++|++++|.+++ ..+..+..+++|+.|++++|+++
T Consensus 382 L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~-------------------- 441 (562)
T 3a79_B 382 LILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT-------------------- 441 (562)
T ss_dssp EECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCC--------------------
T ss_pred EECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCC--------------------
Confidence 666666665422 2345566666666666666655 22233555556666666655554
Q ss_pred ccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccC
Q 003084 514 MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLI 592 (850)
Q Consensus 514 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 592 (850)
+..+. .+. ++|+.|++++|+++ .+|..+.++++|++|++++|++++..+..+..+++|+.|++++|++.+..
T Consensus 442 ---~~~~~-~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 442 ---GSVFR-CLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp ---GGGGS-SCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred ---cchhh-hhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence 33222 121 57888888888887 45555558888888888888888444434778888888888888876543
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.2e-38 Score=351.36 Aligned_cols=373 Identities=23% Similarity=0.272 Sum_probs=318.9
Q ss_pred CcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCcc-ccccccCCCCCCeeec
Q 003084 337 LVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGH-IFSRIFSLRNLRWLLL 415 (850)
Q Consensus 337 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l 415 (850)
-+.++.+++.++ .+|. + .++|++|++++|.++ .++...+..+++|++|++++|.+.+. .+..|.++++|++|++
T Consensus 12 ~~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp TTEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCC-EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred ccccCcCCCCcc-cCCC-C--CCccCEEEecCCccC-cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence 345777777777 5565 3 378999999999999 55555556799999999999998744 4677999999999999
Q ss_pred cCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCccc--ccCCCCCcEEECCCCccccCcchh-ccCCCCCCEEeccCCcC
Q 003084 416 EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRW--LGNLKGLQHIVMPKNHLEGPIPVE-FCRLDSLQILDISDNNI 492 (850)
Q Consensus 416 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~ls~n~l 492 (850)
++|.+.+..|..+.++++|++|++++|.+++..+.. +..+++|++|++++|.+.+..|.. +.++++|++|++++|.+
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 999999888999999999999999999998755544 889999999999999999887766 88999999999999999
Q ss_pred CCCCCCCcC---CCcccEEEccCcccccccCc-------cccCCCCCCcEEECcCCcCCCCcCccccCC---CCCCEEEC
Q 003084 493 SGSLPSCFY---PLSIKQVHLSKNMLHGQLKE-------GTFFNCSSLVTLDLSYNYLNGSIPDWIDGL---SQLSHLNL 559 (850)
Q Consensus 493 ~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~-------~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L 559 (850)
.+..+..+. ..+++.+++++|.+.+..+. ..+..+++|+.|++++|++++..|..+... ++|+.|++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 988777664 37899999999998754332 113466899999999999988777766544 89999999
Q ss_pred cCCcCccCC----------chhccC--CCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCc
Q 003084 560 AHNNLEGEV----------PIQLCR--LNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGS 627 (850)
Q Consensus 560 ~~n~l~~~~----------~~~l~~--l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (850)
++|...+.. +..+.. .++|+.|++++|.+.+..+..+..++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~--------------------------- 299 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT--------------------------- 299 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT---------------------------
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCC---------------------------
Confidence 998655321 122222 36899999999999998888776644
Q ss_pred hhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEE
Q 003084 628 VEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 707 (850)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 707 (850)
+|++|++++|++++..|..|.++++|++|+|++|.+++..|..|+.+++|+.|+
T Consensus 300 --------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 300 --------------------------DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp --------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred --------------------------CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 899999999999999899999999999999999999999899999999999999
Q ss_pred CcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCccccCCCCccccCCCCCCCCCCC
Q 003084 708 LSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPL 767 (850)
Q Consensus 708 Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l 767 (850)
+++|++++..|..+..+++|++|++++|++++..+..+..++.++.+.+++||+.|+||.
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 999999999999999999999999999999987777778899999999999999999983
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5e-37 Score=338.61 Aligned_cols=161 Identities=32% Similarity=0.447 Sum_probs=96.0
Q ss_pred CCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEE
Q 003084 310 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFL 389 (850)
Q Consensus 310 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 389 (850)
++|++|++++|.++ .++.. .++|++|++++|.+++ +| .++++++|++|++++|+++ .+|.. ..+|++|
T Consensus 111 ~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L 178 (454)
T 1jl5_A 111 QSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFI 178 (454)
T ss_dssp TTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEE
T ss_pred CCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEE
Confidence 45666666666655 23321 2467777777777764 55 4677777777777777776 45542 3467777
Q ss_pred EccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccc
Q 003084 390 SLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE 469 (850)
Q Consensus 390 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 469 (850)
++++|.+.+ +| .+.++++|++|++++|.+.+ +|.. .++|++|++++|.+. .+| .++.+++|++|++++|+++
T Consensus 179 ~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 179 AAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp ECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS
T ss_pred ECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC
Confidence 777776665 33 46666777777777776664 3322 136666777666666 344 2566666666666666665
Q ss_pred cCcchhccCCCCCCEEeccCCcCCC
Q 003084 470 GPIPVEFCRLDSLQILDISDNNISG 494 (850)
Q Consensus 470 ~~~~~~~~~l~~L~~L~ls~n~l~~ 494 (850)
+. |. ..++|+.|++++|.+.+
T Consensus 251 ~l-~~---~~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 251 TL-PD---LPPSLEALNVRDNYLTD 271 (454)
T ss_dssp SC-CS---CCTTCCEEECCSSCCSC
T ss_pred cc-cc---cccccCEEECCCCcccc
Confidence 42 22 13556666666666553
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.6e-36 Score=338.57 Aligned_cols=347 Identities=19% Similarity=0.178 Sum_probs=224.8
Q ss_pred EEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCC
Q 003084 339 YFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGN 418 (850)
Q Consensus 339 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 418 (850)
.++.+++.++ .+|..+. +.+++|++++|.++ .++...+..+++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus 15 ~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 4444554444 3343332 34555555555555 333333344555555555555555444555555555555555555
Q ss_pred cCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCC
Q 003084 419 HFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS 498 (850)
Q Consensus 419 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~ 498 (850)
.+....+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|.++++|+.|++++|.+.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----- 165 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT----- 165 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-----
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-----
Confidence 554433334445555555555555555444444555555555555555554444444455555555555554443
Q ss_pred CcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCC
Q 003084 499 CFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQL 578 (850)
Q Consensus 499 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 578 (850)
+ ++...+..+++|+.|++++|.+.+..+..|..+++|+.|++++|...+.++.......+|
T Consensus 166 ------------------~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 226 (477)
T 2id5_A 166 ------------------S-IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226 (477)
T ss_dssp ------------------S-CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCC
T ss_pred ------------------c-cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccc
Confidence 2 333367788888888888888887777778888888888888887776666666666788
Q ss_pred CEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeE
Q 003084 579 QLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 658 (850)
Q Consensus 579 ~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 658 (850)
+.|++++|.+++.++..|..+ ++|++|
T Consensus 227 ~~L~l~~n~l~~~~~~~~~~l-----------------------------------------------------~~L~~L 253 (477)
T 2id5_A 227 TSLSITHCNLTAVPYLAVRHL-----------------------------------------------------VYLRFL 253 (477)
T ss_dssp SEEEEESSCCCSCCHHHHTTC-----------------------------------------------------TTCCEE
T ss_pred cEEECcCCcccccCHHHhcCc-----------------------------------------------------cccCee
Confidence 888888888876544444433 378888
Q ss_pred EccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCc
Q 003084 659 DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 738 (850)
Q Consensus 659 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 738 (850)
+|++|.+++..+..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++.
T Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp ECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 88888888877788888889999999999998888888888999999999999998777778888889999999999988
Q ss_pred CCCCCCccccCCCCccccCCCCCCCCCCC
Q 003084 739 GKIPEWTAQFATFNKSSYDGNPFLCGLPL 767 (850)
Q Consensus 739 ~~~p~~~~~~~~~~~~~~~~n~~~c~~~l 767 (850)
|.++.. ..+.......+.++...|..|.
T Consensus 334 c~c~~~-~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 334 CDCRLL-WVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp CSGGGH-HHHTTTTSSCCTTCCCBEEESG
T ss_pred CccchH-hHHhhhhccccCccCceeCCch
Confidence 776541 1122233455677788887663
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.2e-35 Score=327.60 Aligned_cols=402 Identities=24% Similarity=0.274 Sum_probs=158.1
Q ss_pred ceeEEEccCCCCCCcccCccccCCCCccEEEccCCcccccCchhhhhcCCCCcEEEccCCcCcCcCccCcCCCCCccEEE
Q 003084 237 QLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLD 316 (850)
Q Consensus 237 ~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ 316 (850)
+|++|+++.+ .+ +.+|..++++++|++|++++|.+.+.+|..+ +.+++|+.+++..|.. .++++|+
T Consensus 12 ~L~~L~l~~n-~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~-----------~~l~~L~ 77 (454)
T 1jl5_A 12 FLQEPLRHSS-NL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLD-----------RQAHELE 77 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred cchhhhcccC-ch-hhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhc-----------cCCCEEE
Confidence 5666666333 33 5666666666666666666666666666543 3333331111111100 1124455
Q ss_pred ccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCcc
Q 003084 317 VSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSL 396 (850)
Q Consensus 317 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 396 (850)
+++|.++ .+|. ..++|++|++++|.+++ +|.. +++|++|++++|.++ .+|.. .++|++|++++|.+
T Consensus 78 l~~~~l~-~lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l 143 (454)
T 1jl5_A 78 LNNLGLS-SLPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQL 143 (454)
T ss_dssp CTTSCCS-CCCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCC
T ss_pred ecCCccc-cCCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCC
Confidence 5555444 2332 12345555555555443 3322 244555555555544 23221 13455555555555
Q ss_pred CccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhc
Q 003084 397 KGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEF 476 (850)
Q Consensus 397 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 476 (850)
.+ +| .+.++++|++|++++|++.+ +|..+ ++|++|++++|.+++ +| .++.+++|++|++++|.+++. |..
T Consensus 144 ~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~~- 213 (454)
T 1jl5_A 144 EK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PDL- 213 (454)
T ss_dssp SS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CCC-
T ss_pred CC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CCC-
Confidence 43 33 34455555555555555443 22221 245555555555543 22 344555555555555554431 111
Q ss_pred cCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCE
Q 003084 477 CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSH 556 (850)
Q Consensus 477 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 556 (850)
.++|+.|++++|.+. .+|....+++|+.|++++|.+++ ++. .+++|+.|++++|++++ +|.. +++|+.
T Consensus 214 --~~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~ 281 (454)
T 1jl5_A 214 --PLSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKT-LPD----LPPSLEALNVRDNYLTD-LPEL---PQSLTF 281 (454)
T ss_dssp --CTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCS----CCTTCCEEECCSSCCSC-CCCC---CTTCCE
T ss_pred --cCcccEEECcCCcCC-cccccCCCCCCCEEECCCCcCCc-ccc----cccccCEEECCCCcccc-cCcc---cCcCCE
Confidence 134555555555544 33333334455555555555432 221 12455555555555553 2221 245555
Q ss_pred EECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhh
Q 003084 557 LNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIF 636 (850)
Q Consensus 557 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (850)
|++++|++++.. . ..++|+.|++++|++++... .
T Consensus 282 L~ls~N~l~~l~-~---~~~~L~~L~l~~N~l~~i~~-----~------------------------------------- 315 (454)
T 1jl5_A 282 LDVSENIFSGLS-E---LPPNLYYLNASSNEIRSLCD-----L------------------------------------- 315 (454)
T ss_dssp EECCSSCCSEES-C---CCTTCCEEECCSSCCSEECC-----C-------------------------------------
T ss_pred EECcCCccCccc-C---cCCcCCEEECcCCcCCcccC-----C-------------------------------------
Confidence 555555555321 0 01455555555555543210 0
Q ss_pred hhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcc-
Q 003084 637 EFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG- 715 (850)
Q Consensus 637 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~- 715 (850)
.++|++|++++|++++ +|.. +++|+.|++++|++++ +|. .+++|+.|++++|++++
T Consensus 316 ---------------~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l 372 (454)
T 1jl5_A 316 ---------------PPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREF 372 (454)
T ss_dssp ---------------CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSC
T ss_pred ---------------cCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcC
Confidence 0145556666665553 3332 3555566666665552 333 24555666666666555
Q ss_pred -cCChhhhcC-------------CCCCEEEccCCcCcC--CCCCCccccCCCCccccCCCCCCC
Q 003084 716 -KIPRQLVDL-------------NTLAIFIVAYNNLSG--KIPEWTAQFATFNKSSYDGNPFLC 763 (850)
Q Consensus 716 -~~p~~l~~l-------------~~L~~L~l~~N~l~~--~~p~~~~~~~~~~~~~~~~n~~~c 763 (850)
.+|.++..+ ++|+.|++++|++++ .+|.++ ..+.+.+|...|
T Consensus 373 ~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl------~~L~~~~~~~~~ 430 (454)
T 1jl5_A 373 PDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESV------EDLRMNSERVVD 430 (454)
T ss_dssp CCCCTTCCEEECCC--------------------------------------------------
T ss_pred CCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhH------hheeCcCcccCC
Confidence 455555544 789999999999987 666543 333445555444
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.7e-34 Score=321.97 Aligned_cols=346 Identities=25% Similarity=0.354 Sum_probs=230.8
Q ss_pred CCCCcEEEccCCcCcCcCccCcCCCCCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEE
Q 003084 285 NTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFL 364 (850)
Q Consensus 285 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 364 (850)
+++++.|++.++.+.... .+..+++|++|++++|.++ .++. +..+++|++|++++|.+++..+ +..+++|++|
T Consensus 45 l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred hccccEEecCCCCCccCc--chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 456666666666665421 2455666666666666665 3333 3345666666666666654333 5666666666
Q ss_pred EccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCC
Q 003084 365 DLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNL 444 (850)
Q Consensus 365 ~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 444 (850)
++++|.++ .++. +..+++|++|++++|.+.+. ..+..+++|++|+++ +.+.+.. .+.++++|+.|++++|.+
T Consensus 118 ~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 118 TLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKV 189 (466)
T ss_dssp ECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred ECCCCCCC-CChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcC
Confidence 66666666 3333 34466666666666665542 135556666666664 2333221 255555666666666655
Q ss_pred CCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCcccc
Q 003084 445 SGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTF 524 (850)
Q Consensus 445 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 524 (850)
.+. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+. +. ..+
T Consensus 190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-----------------------~~---~~l 239 (466)
T 1o6v_A 190 SDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-----------------------DI---GTL 239 (466)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-----------------------CC---GGG
T ss_pred CCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc-----------------------cc---hhh
Confidence 432 234555555555555555554433 344555555555555443 21 156
Q ss_pred CCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccc
Q 003084 525 FNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHES 604 (850)
Q Consensus 525 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~ 604 (850)
..+++|+.|++++|.+++..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|++.+..+ +..
T Consensus 240 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~------ 307 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN------ 307 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGG------
T ss_pred hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcC------
Confidence 778889999999998886654 7888999999999999886544 7888999999999998876543 222
Q ss_pred cCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEEC
Q 003084 605 YNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNL 684 (850)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 684 (850)
+++|++|++++|++++..| +..+++|+.|++
T Consensus 308 -----------------------------------------------l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 338 (466)
T 1o6v_A 308 -----------------------------------------------LKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 338 (466)
T ss_dssp -----------------------------------------------CTTCSEEECCSSCCSCCGG--GGGCTTCCEEEC
T ss_pred -----------------------------------------------CCCCCEEECcCCcCCCchh--hccCccCCEeEC
Confidence 3489999999999987655 788999999999
Q ss_pred cCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCC
Q 003084 685 SHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGK 740 (850)
Q Consensus 685 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 740 (850)
++|++++. ..++.+++|+.|++++|++++..| +..+++|+.|++++|++++.
T Consensus 339 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 339 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 99999865 468889999999999999998777 78899999999999999874
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1e-34 Score=316.35 Aligned_cols=335 Identities=23% Similarity=0.220 Sum_probs=226.4
Q ss_pred CCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEE
Q 003084 358 VIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGL 437 (850)
Q Consensus 358 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 437 (850)
+++++.|++++|.++ .+|..++..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..+.++++|++|
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 456666777766666 6666666667777777777777766666667777777777777777776666667777777777
Q ss_pred ECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCccccc
Q 003084 438 YLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHG 517 (850)
Q Consensus 438 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~ 517 (850)
++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++.. ....++|+.+++++|.+.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~- 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLS- 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCS-
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccccccc-
Confidence 77777776554445667777777777777777666666777777777777777766431 223456666666666554
Q ss_pred ccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcc
Q 003084 518 QLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFD 597 (850)
Q Consensus 518 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 597 (850)
.+...++|+.|++++|.+... |. ...++|+.|++++|.+++. ..+..+++|++|++++|.+.+..|..|.
T Consensus 200 -----~~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (390)
T 3o6n_A 200 -----TLAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV 269 (390)
T ss_dssp -----EEECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred -----ccCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence 223345677777777777643 22 2246777777777777643 4567777777777777777776666555
Q ss_pred cCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCC
Q 003084 598 NTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLT 677 (850)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 677 (850)
..+ +|++|++++|++++ +|..+..++
T Consensus 270 ~l~-----------------------------------------------------~L~~L~L~~n~l~~-~~~~~~~l~ 295 (390)
T 3o6n_A 270 KMQ-----------------------------------------------------RLERLYISNNRLVA-LNLYGQPIP 295 (390)
T ss_dssp TCS-----------------------------------------------------SCCEEECCSSCCCE-EECSSSCCT
T ss_pred ccc-----------------------------------------------------cCCEEECCCCcCcc-cCcccCCCC
Confidence 433 67777777777774 455566777
Q ss_pred CCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCccccCCCCccccC
Q 003084 678 RIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYD 757 (850)
Q Consensus 678 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~ 757 (850)
+|+.|+|++|+++ .+|..+..+++|+.|++++|+++.. | +..+++|+.|++++|++.|.... ..+..+....+.
T Consensus 296 ~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~ 369 (390)
T 3o6n_A 296 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVD 369 (390)
T ss_dssp TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBC
T ss_pred CCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH--HHHHHHHhhccc
Confidence 8888888888877 4566667778888888888887744 3 56677888888888888765433 345556666677
Q ss_pred CCCCCCCCC
Q 003084 758 GNPFLCGLP 766 (850)
Q Consensus 758 ~n~~~c~~~ 766 (850)
+++..|.++
T Consensus 370 ~~~~~c~~~ 378 (390)
T 3o6n_A 370 DADQHCKID 378 (390)
T ss_dssp CCCSCCCTT
T ss_pred ccCceeccc
Confidence 777777654
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.3e-34 Score=317.43 Aligned_cols=346 Identities=25% Similarity=0.341 Sum_probs=285.7
Q ss_pred CCCCccEEEccCCcccccCchhhhhcCCCCcEEEccCCcCcCcCccCcCCCCCccEEEccCCcCCcCCChhhhhcCCCCc
Q 003084 259 HQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLV 338 (850)
Q Consensus 259 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 338 (850)
.+++++.|++.++.+.. +|. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+ ++. +..+++|+
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~ 115 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-IDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-ITP--LANLTNLT 115 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG--GTTCTTCC
T ss_pred HhccccEEecCCCCCcc-Ccc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcccc-Chh--hcCCCCCC
Confidence 45689999999988754 554 4689999999999999998655 8899999999999999984 444 55689999
Q ss_pred EEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCC
Q 003084 339 YFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGN 418 (850)
Q Consensus 339 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 418 (850)
+|++++|.+++. +. +..+++|++|++++|.+. .++. +..+++|++|+++ +.+.+.. .+.++++|++|++++|
T Consensus 116 ~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 116 GLTLFNNQITDI-DP-LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSN 187 (466)
T ss_dssp EEECCSSCCCCC-GG-GTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSS
T ss_pred EEECCCCCCCCC-hH-HcCCCCCCEEECCCCccC-CChh--hccCCcccEeecC-CcccCch--hhccCCCCCEEECcCC
Confidence 999999999854 33 899999999999999998 5664 4569999999997 4554433 3889999999999999
Q ss_pred cCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCC
Q 003084 419 HFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS 498 (850)
Q Consensus 419 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~ 498 (850)
.+.+. ..+..+++|++|++++|.+.+..+ ++.+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..
T Consensus 188 ~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~-- 259 (466)
T 1o6v_A 188 KVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA-- 259 (466)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--
T ss_pred cCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccch--
Confidence 98854 348889999999999999987655 77899999999999999864 46788999999999999876321
Q ss_pred CcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCC
Q 003084 499 CFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQL 578 (850)
Q Consensus 499 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 578 (850)
.+..+++|+.|++++|.+++..+ +..+++|+.|++++|++.+..+ +..+++|
T Consensus 260 ------------------------~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 311 (466)
T 1o6v_A 260 ------------------------PLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL 311 (466)
T ss_dssp ------------------------GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred ------------------------hhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCC
Confidence 25677888888888888886544 7788889999999988886544 7788899
Q ss_pred CEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeE
Q 003084 579 QLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 658 (850)
Q Consensus 579 ~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 658 (850)
+.|++++|++++..+ +.. +++|++|
T Consensus 312 ~~L~L~~n~l~~~~~--~~~-----------------------------------------------------l~~L~~L 336 (466)
T 1o6v_A 312 TYLTLYFNNISDISP--VSS-----------------------------------------------------LTKLQRL 336 (466)
T ss_dssp SEEECCSSCCSCCGG--GGG-----------------------------------------------------CTTCCEE
T ss_pred CEEECcCCcCCCchh--hcc-----------------------------------------------------CccCCEe
Confidence 999999998876654 222 3479999
Q ss_pred EccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcc
Q 003084 659 DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG 715 (850)
Q Consensus 659 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 715 (850)
++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 337 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 337 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred ECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 9999998865 468889999999999999998776 8889999999999999985
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=325.01 Aligned_cols=320 Identities=22% Similarity=0.209 Sum_probs=198.2
Q ss_pred EEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccC
Q 003084 314 FLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 393 (850)
Q Consensus 314 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~ 393 (850)
.++.+++.++ .+|..+ .+++++|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|++++
T Consensus 15 ~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp EEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred EEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECCC
Confidence 4555555554 455433 235666666666666555556666666666666666665 33333344466666666666
Q ss_pred CccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcc
Q 003084 394 NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIP 473 (850)
Q Consensus 394 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 473 (850)
|.+....+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 66665555556666666666666666666666666666666666666666666556666666677777777776666555
Q ss_pred hhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCC
Q 003084 474 VEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ 553 (850)
Q Consensus 474 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 553 (850)
..+..+++|+.|++++|.+.+..+ ..|..+++|+.|++++|...+..+.......+
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~------------------------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 225 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRD------------------------YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECT------------------------TCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred hHhcccCCCcEEeCCCCcCcEeCh------------------------hhcccCcccceeeCCCCccccccCcccccCcc
Confidence 666677777777777766653222 14455555666666655554444444444446
Q ss_pred CCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhh
Q 003084 554 LSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKIL 633 (850)
Q Consensus 554 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (850)
|+.|++++|++++..+..+..+++|+.|++++|++++..+..|..+.
T Consensus 226 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--------------------------------- 272 (477)
T 2id5_A 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL--------------------------------- 272 (477)
T ss_dssp CSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT---------------------------------
T ss_pred ccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccc---------------------------------
Confidence 66666666666644445566666666666666666665555554433
Q ss_pred hhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcC
Q 003084 634 EIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL 713 (850)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 713 (850)
+|++|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++
T Consensus 273 --------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 273 --------------------RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp --------------------TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred --------------------cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 667777777777766666777777777777777777766666677777777777777776
Q ss_pred cc
Q 003084 714 SG 715 (850)
Q Consensus 714 ~~ 715 (850)
..
T Consensus 333 ~c 334 (477)
T 2id5_A 333 AC 334 (477)
T ss_dssp EC
T ss_pred cC
Confidence 64
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=7.5e-34 Score=326.52 Aligned_cols=335 Identities=23% Similarity=0.217 Sum_probs=242.5
Q ss_pred CCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEE
Q 003084 358 VIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGL 437 (850)
Q Consensus 358 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 437 (850)
+.+++.+++++|.+. .+|..++..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..|.++++|++|
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 345666666666666 5666666666677777777777666666666677777777777777766666666677777777
Q ss_pred ECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCccccc
Q 003084 438 YLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHG 517 (850)
Q Consensus 438 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~ 517 (850)
++++|.+++..+..|..+++|++|++++|.+.+..|..|..+++|+.|++++|.+.+.. ...+++|+.|++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~- 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLS- 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCS-
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccc-
Confidence 77777776555555666777777777777776666666777777777777777766532 223556777777777664
Q ss_pred ccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcc
Q 003084 518 QLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFD 597 (850)
Q Consensus 518 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 597 (850)
.+...++|+.|++++|.+....+.. .++|+.|++++|.+++ +..+..+++|+.|++++|.+.+.+|..|.
T Consensus 206 -----~l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 206 -----TLAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp -----EEECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred -----cccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 2344567888888888887443322 3678888888888875 35677888888888888888888777776
Q ss_pred cCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCC
Q 003084 598 NTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLT 677 (850)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 677 (850)
.++ +|++|+|++|.+++ +|..+..++
T Consensus 276 ~l~-----------------------------------------------------~L~~L~Ls~N~l~~-l~~~~~~l~ 301 (597)
T 3oja_B 276 KMQ-----------------------------------------------------RLERLYISNNRLVA-LNLYGQPIP 301 (597)
T ss_dssp TCS-----------------------------------------------------SCCEEECTTSCCCE-EECSSSCCT
T ss_pred Ccc-----------------------------------------------------CCCEEECCCCCCCC-CCcccccCC
Confidence 544 78888888888885 466677788
Q ss_pred CCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCccccCCCCccccC
Q 003084 678 RIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYD 757 (850)
Q Consensus 678 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~ 757 (850)
+|+.|+|++|.++ .+|..+..+++|+.|+|++|++++. | +..+++|+.|++++|++.|..+. ..+..+....+.
T Consensus 302 ~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~ 375 (597)
T 3oja_B 302 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVD 375 (597)
T ss_dssp TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBC
T ss_pred CCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH--HHHHHHhhhccc
Confidence 9999999999998 5677788889999999999998854 3 56788999999999999876544 456667777788
Q ss_pred CCCCCCCCC
Q 003084 758 GNPFLCGLP 766 (850)
Q Consensus 758 ~n~~~c~~~ 766 (850)
+++..|+.+
T Consensus 376 ~~~~~C~~~ 384 (597)
T 3oja_B 376 DADQHCKID 384 (597)
T ss_dssp CCCCCCCTT
T ss_pred cccccCCcc
Confidence 888888764
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.2e-33 Score=311.75 Aligned_cols=358 Identities=18% Similarity=0.155 Sum_probs=185.4
Q ss_pred cccCCCCccEEEccCCcccccCchhhhhcCCCCcEEEccCCcCcCcCccCcCCCCCccEEEccCCcCCcCCChhhhhcCC
Q 003084 256 FLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILP 335 (850)
Q Consensus 256 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~ 335 (850)
.+..+++|++|+++++.+.+. | . +..+++|++|++++|.+.+. ++..+++|++|++++|.+++ ++ +..++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~-l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~-~~---~~~l~ 106 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-G-IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTN-LD---VTPLT 106 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-T-GGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTTCT
T ss_pred ChhHcCCCCEEEccCCCcccC-h-h-hcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCce-ee---cCCCC
Confidence 344455555555555554432 3 1 24455555555555555442 14445555555555555442 22 22244
Q ss_pred CCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeec
Q 003084 336 SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLL 415 (850)
Q Consensus 336 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 415 (850)
+|++|++++|.+++ ++ ++.+++|++|++++|++++ ++ +..+++|++|++++|...+.+ .+..+++|++|++
T Consensus 107 ~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 177 (457)
T 3bz5_A 107 KLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDC 177 (457)
T ss_dssp TCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEEC
T ss_pred cCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEEC
Confidence 55555555554443 22 4444455555555554442 22 223444444444444322222 2334444444444
Q ss_pred cCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCC
Q 003084 416 EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGS 495 (850)
Q Consensus 416 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ 495 (850)
++|++++. | +..+++|+.|++++|.+++. .+..+++|++|++++|++++ +| +..+++|+.|++++|++++.
T Consensus 178 s~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 178 SFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp CSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred CCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence 44444431 2 33444444444444444432 13344444444444444443 12 33444444444444444332
Q ss_pred CCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCC
Q 003084 496 LPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRL 575 (850)
Q Consensus 496 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 575 (850)
. +..+++|+.|+++.| +|+.|++++|.+.+.+| +..+
T Consensus 249 ~---------------------------~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l 285 (457)
T 3bz5_A 249 D---------------------------VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGC 285 (457)
T ss_dssp C---------------------------CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTC
T ss_pred C---------------------------HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--cccc
Confidence 1 233444555554443 23344455555444443 3445
Q ss_pred CCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccC
Q 003084 576 NQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLL 655 (850)
Q Consensus 576 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 655 (850)
++|+.|++++|+..+.+|........ +++ ...++|
T Consensus 286 ~~L~~L~Ls~n~~l~~l~~~~~~L~~----------------------------------L~l-----------~~~~~L 320 (457)
T 3bz5_A 286 RKIKELDVTHNTQLYLLDCQAAGITE----------------------------------LDL-----------SQNPKL 320 (457)
T ss_dssp TTCCCCCCTTCTTCCEEECTTCCCSC----------------------------------CCC-----------TTCTTC
T ss_pred ccCCEEECCCCcccceeccCCCcceE----------------------------------ech-----------hhcccC
Confidence 55666666666544443322111110 000 012379
Q ss_pred CeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCC
Q 003084 656 AGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN 735 (850)
Q Consensus 656 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N 735 (850)
++|++++|++++. + ++++++|+.|++++|++++ ++.|+.|++++|.+.|. ..+..|..+++++|
T Consensus 321 ~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N 384 (457)
T 3bz5_A 321 VYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNN 384 (457)
T ss_dssp CEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTT
T ss_pred CEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccC
Confidence 9999999999974 3 8899999999999999985 25677788999999876 35567788899999
Q ss_pred cCcCCCCCCc
Q 003084 736 NLSGKIPEWT 745 (850)
Q Consensus 736 ~l~~~~p~~~ 745 (850)
+++|.+|..+
T Consensus 385 ~l~g~ip~~~ 394 (457)
T 3bz5_A 385 SLTIAVSPDL 394 (457)
T ss_dssp BEEEECCTTC
T ss_pred cEEEEcChhH
Confidence 9999999743
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.4e-32 Score=300.24 Aligned_cols=347 Identities=18% Similarity=0.177 Sum_probs=196.8
Q ss_pred CcCCCCCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCC
Q 003084 305 PIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCV 384 (850)
Q Consensus 305 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 384 (850)
.+..+++|++|++++|.+++ +| . +..+++|++|++++|.+++. | ++.+++|++|++++|.++ .++ +..++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~-~~-~-l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~-~~~---~~~l~ 106 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITD-MT-G-IEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLT-NLD---VTPLT 106 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCC-CT-T-GGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCS-CCC---CTTCT
T ss_pred ChhHcCCCCEEEccCCCccc-Ch-h-hcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCc-eee---cCCCC
Confidence 34445556666666665552 33 2 23355666666666665542 2 555666666666666665 233 33456
Q ss_pred CCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECC
Q 003084 385 NLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 464 (850)
Q Consensus 385 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 464 (850)
+|++|++++|.+.+. + +..+++|++|++++|++++. .+..+++|++|++++|...+.+ .+..+++|++|+++
T Consensus 107 ~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 107 KLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCS 178 (457)
T ss_dssp TCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECC
T ss_pred cCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECC
Confidence 666666666665542 2 55566666666666666543 2555666666666666433333 35555666666666
Q ss_pred CCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCc
Q 003084 465 KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSI 544 (850)
Q Consensus 465 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 544 (850)
+|++++. | +..+++|+.|++++|.+++. ....+++|+.|++++|.+++ ++ +..+++|+.|++++|++++..
T Consensus 179 ~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 179 FNKITEL-D--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp SSCCCCC-C--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC
T ss_pred CCcccee-c--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcCCCcC
Confidence 6666542 2 45556666666666665532 11123333333333333333 21 344455555555555555432
Q ss_pred CccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCC
Q 003084 545 PDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGP 624 (850)
Q Consensus 545 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (850)
++.+++|+.|++++| +|+.|++++|++.+..|. .
T Consensus 250 ---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~~--~--------------------------- 283 (457)
T 3bz5_A 250 ---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQA--E--------------------------- 283 (457)
T ss_dssp ---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEEC--T---------------------------
T ss_pred ---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCcccc--c---------------------------
Confidence 234445555554443 234455555554433321 1
Q ss_pred CCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCc--------cccCCCCCCEEECcCCcCCccCccc
Q 003084 625 QGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPP--------QIGNLTRIQTLNLSHNNLTGTIPLT 696 (850)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~--------~~~~l~~L~~L~Ls~N~l~~~~~~~ 696 (850)
.+++|+.|++++|...+.+|. .+.++++|+.|++++|++++. +
T Consensus 284 --------------------------~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~-- 334 (457)
T 3bz5_A 284 --------------------------GCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D-- 334 (457)
T ss_dssp --------------------------TCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--
T ss_pred --------------------------ccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--
Confidence 134788888888876655543 256667888899999988874 3
Q ss_pred CCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCccccCCCCccccCCCCCCCCCC
Q 003084 697 FSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLP 766 (850)
Q Consensus 697 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~ 766 (850)
++.+++|+.|++++|++++ ++.|..|++++|.++|. ..+..+....++.|.....-|
T Consensus 335 l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip 391 (457)
T 3bz5_A 335 VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVS 391 (457)
T ss_dssp CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECC
T ss_pred cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcC
Confidence 7888889999999998875 24566677888888875 234445556666666554444
No 37
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.7e-33 Score=292.99 Aligned_cols=260 Identities=34% Similarity=0.547 Sum_probs=224.6
Q ss_pred CCCcEEECcCCCCCC--CCcccccCCCCCcEEECCC-CccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEE
Q 003084 432 SSLKGLYLNNNNLSG--KIPRWLGNLKGLQHIVMPK-NHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQV 508 (850)
Q Consensus 432 ~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L 508 (850)
.+++.|++++|.+.+ .+|..+.++++|++|++++ |.+.+..|..|.++++|++|++++|.+.+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-------------- 115 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-------------- 115 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE--------------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC--------------
Confidence 467777888877776 6777777778888888874 77777777777778888888877777653
Q ss_pred EccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCC-CCCEEeCCCCc
Q 003084 509 HLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLN-QLQLLDLSDNN 587 (850)
Q Consensus 509 ~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~ 587 (850)
.++. .+..+++|++|++++|.+++..|..+..+++|++|++++|++++.+|..+..++ +|++|++++|+
T Consensus 116 ---------~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 116 ---------AIPD-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp ---------ECCG-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred ---------cCCH-HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence 3333 677888999999999999888888899999999999999999988899999988 99999999999
Q ss_pred CCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCcccc
Q 003084 588 LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG 667 (850)
Q Consensus 588 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 667 (850)
+++..|..+... .|++|++++|++++
T Consensus 186 l~~~~~~~~~~l------------------------------------------------------~L~~L~Ls~N~l~~ 211 (313)
T 1ogq_A 186 LTGKIPPTFANL------------------------------------------------------NLAFVDLSRNMLEG 211 (313)
T ss_dssp EEEECCGGGGGC------------------------------------------------------CCSEEECCSSEEEE
T ss_pred eeccCChHHhCC------------------------------------------------------cccEEECcCCcccC
Confidence 988877766542 38999999999999
Q ss_pred CCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCccc
Q 003084 668 HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQ 747 (850)
Q Consensus 668 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~ 747 (850)
..|..|..+++|+.|+|++|.+++.+|. +..+++|+.|++++|++++.+|..+..+++|+.|++++|+++|.+|.. ..
T Consensus 212 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~ 289 (313)
T 1ogq_A 212 DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GN 289 (313)
T ss_dssp CCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TT
T ss_pred cCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-cc
Confidence 9999999999999999999999977665 888999999999999999999999999999999999999999999996 88
Q ss_pred cCCCCccccCCCCCCCCCCCCCCC
Q 003084 748 FATFNKSSYDGNPFLCGLPLPICR 771 (850)
Q Consensus 748 ~~~~~~~~~~~n~~~c~~~l~~c~ 771 (850)
++++..+.+.+||++|+.|+.+|.
T Consensus 290 l~~L~~l~l~~N~~lc~~p~~~C~ 313 (313)
T 1ogq_A 290 LQRFDVSAYANNKCLCGSPLPACT 313 (313)
T ss_dssp GGGSCGGGTCSSSEEESTTSSCCC
T ss_pred ccccChHHhcCCCCccCCCCCCCC
Confidence 999999999999999998887773
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.9e-32 Score=293.99 Aligned_cols=312 Identities=22% Similarity=0.259 Sum_probs=230.4
Q ss_pred CCCCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCC
Q 003084 308 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLE 387 (850)
Q Consensus 308 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 387 (850)
.+++++.|++++|.++ .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.++ .++...+..+++|+
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCC
Confidence 3567788888888876 677777777788888888888887766777888888888888888877 45555555577777
Q ss_pred EEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCc
Q 003084 388 FLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH 467 (850)
Q Consensus 388 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 467 (850)
+|++++|.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+++|+.|++++|.
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL 197 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence 777777777755555566777777777777777666666666777777777777776643 23445666666666665
Q ss_pred cccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCcc
Q 003084 468 LEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 547 (850)
Q Consensus 468 l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 547 (850)
+.+. ...++|+.|++++|.+. .. +. ...++|+.|++++|.+++. .+
T Consensus 198 l~~~-----~~~~~L~~L~l~~n~l~-----------------------~~-~~---~~~~~L~~L~l~~n~l~~~--~~ 243 (390)
T 3o6n_A 198 LSTL-----AIPIAVEELDASHNSIN-----------------------VV-RG---PVNVELTILKLQHNNLTDT--AW 243 (390)
T ss_dssp CSEE-----ECCSSCSEEECCSSCCC-----------------------EE-EC---CCCSSCCEEECCSSCCCCC--GG
T ss_pred cccc-----CCCCcceEEECCCCeee-----------------------ec-cc---cccccccEEECCCCCCccc--HH
Confidence 5432 22345555555555543 22 21 2246889999999998864 57
Q ss_pred ccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCc
Q 003084 548 IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGS 627 (850)
Q Consensus 548 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (850)
+..+++|++|++++|.+.+..|..+..+++|+.|++++|++++.... +..
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~----------------------------- 293 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY-GQP----------------------------- 293 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECS-SSC-----------------------------
T ss_pred HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcc-cCC-----------------------------
Confidence 88899999999999999988888999999999999999998765322 221
Q ss_pred hhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEE
Q 003084 628 VEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 707 (850)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 707 (850)
+++|++|++++|+++ .+|..+..+++|+.|++++|+++.. + +..+++|+.|+
T Consensus 294 ------------------------l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~ 345 (390)
T 3o6n_A 294 ------------------------IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLT 345 (390)
T ss_dssp ------------------------CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEE
T ss_pred ------------------------CCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEE
Confidence 348999999999998 5677788999999999999999855 3 77889999999
Q ss_pred CcCCcCccc
Q 003084 708 LSYNKLSGK 716 (850)
Q Consensus 708 Ls~N~l~~~ 716 (850)
+++|++...
T Consensus 346 l~~N~~~~~ 354 (390)
T 3o6n_A 346 LSHNDWDCN 354 (390)
T ss_dssp CCSSCEEHH
T ss_pred cCCCCccch
Confidence 999999864
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1e-31 Score=287.94 Aligned_cols=304 Identities=22% Similarity=0.347 Sum_probs=214.3
Q ss_pred CCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCee
Q 003084 334 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWL 413 (850)
Q Consensus 334 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 413 (850)
+++|++|+++++.+.. ++ .+..+++|++|++++|.++ .++. +..+++|++|++++|.+... ..+..+++|++|
T Consensus 43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L 115 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115 (347)
T ss_dssp HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence 5678888888877763 33 3677777888888887777 4554 45577777777777777643 346777777777
Q ss_pred eccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCC
Q 003084 414 LLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS 493 (850)
Q Consensus 414 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~ 493 (850)
++++|.+.+..+ +..+++|+.|++++|...... ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.
T Consensus 116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp ECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred ECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence 777777764322 666777777777777554333 336667777777777776664433 566666666666666654
Q ss_pred CCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhcc
Q 003084 494 GSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC 573 (850)
Q Consensus 494 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 573 (850)
+. + .+..+++|+.|++++|.+++..+ +..+++|++|++++|++++..+ +.
T Consensus 191 ~~------------------------~--~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~ 240 (347)
T 4fmz_A 191 DI------------------------S--PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LA 240 (347)
T ss_dssp CC------------------------G--GGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred cc------------------------c--cccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hh
Confidence 21 1 25667788888888888875543 7778888888888888875443 77
Q ss_pred CCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhc
Q 003084 574 RLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLS 653 (850)
Q Consensus 574 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 653 (850)
.+++|++|++++|.+++. ..+.. ++
T Consensus 241 ~l~~L~~L~l~~n~l~~~--~~~~~-----------------------------------------------------l~ 265 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQISDI--NAVKD-----------------------------------------------------LT 265 (347)
T ss_dssp TCTTCCEEECCSSCCCCC--GGGTT-----------------------------------------------------CT
T ss_pred cCCCCCEEECCCCccCCC--hhHhc-----------------------------------------------------CC
Confidence 788888888888877653 12222 34
Q ss_pred cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcc
Q 003084 654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 733 (850)
Q Consensus 654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 733 (850)
+|++|++++|++++. ..+..+++|+.|++++|.+++..|..++.+++|+.|++++|++++..| +..+++|+.|+++
T Consensus 266 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 266 KLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFA 341 (347)
T ss_dssp TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSS
T ss_pred CcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehh
Confidence 788888888888754 457888888888888888888888888888888888888888886655 7788888888888
Q ss_pred CCcCc
Q 003084 734 YNNLS 738 (850)
Q Consensus 734 ~N~l~ 738 (850)
+|+++
T Consensus 342 ~N~i~ 346 (347)
T 4fmz_A 342 NQVIK 346 (347)
T ss_dssp CC---
T ss_pred hhccc
Confidence 88875
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.3e-31 Score=284.02 Aligned_cols=307 Identities=25% Similarity=0.357 Sum_probs=254.1
Q ss_pred cCCCCCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCC
Q 003084 306 IHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVN 385 (850)
Q Consensus 306 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 385 (850)
+..+++|++|+++++.+. .++. +..+++|++|++++|.+++. +. +..+++|++|++++|.++ .++. +..+++
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~ 111 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKIT-DISA--LQNLTN 111 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCGG--GTTCTT
T ss_pred chhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCccc-CchH--HcCCCc
Confidence 456889999999999997 5654 44589999999999999854 43 899999999999999998 5653 567999
Q ss_pred CCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCC
Q 003084 386 LEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPK 465 (850)
Q Consensus 386 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 465 (850)
|++|++++|.+.+..+ +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|++|++++
T Consensus 112 L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNY 186 (347)
T ss_dssp CSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTT
T ss_pred CCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccC
Confidence 9999999999986544 8899999999999997665444 48899999999999999986544 88999999999999
Q ss_pred CccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcC
Q 003084 466 NHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP 545 (850)
Q Consensus 466 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 545 (850)
|.+.+..+ +..+++|+.+++++|.+.+.. .+..+++|++|++++|++++..+
T Consensus 187 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--------------------------~~~~~~~L~~L~l~~n~l~~~~~ 238 (347)
T 4fmz_A 187 NQIEDISP--LASLTSLHYFTAYVNQITDIT--------------------------PVANMTRLNSLKIGNNKITDLSP 238 (347)
T ss_dssp SCCCCCGG--GGGCTTCCEEECCSSCCCCCG--------------------------GGGGCTTCCEEECCSSCCCCCGG
T ss_pred Cccccccc--ccCCCccceeecccCCCCCCc--------------------------hhhcCCcCCEEEccCCccCCCcc
Confidence 99986544 788999999999999876321 25677888888998888886544
Q ss_pred ccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCC
Q 003084 546 DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQ 625 (850)
Q Consensus 546 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (850)
+..+++|++|++++|.+++. ..+..+++|++|++++|++++. ..+..
T Consensus 239 --~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~--------------------------- 285 (347)
T 4fmz_A 239 --LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNN--------------------------- 285 (347)
T ss_dssp --GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGG---------------------------
T ss_pred --hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcC---------------------------
Confidence 78889999999999988854 4688889999999999988764 12222
Q ss_pred CchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCE
Q 003084 626 GSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIES 705 (850)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 705 (850)
+++|++|++++|++++..|..+..+++|+.|++++|++++..| +..+++|+.
T Consensus 286 --------------------------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 337 (347)
T 4fmz_A 286 --------------------------LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDS 337 (347)
T ss_dssp --------------------------CTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSE
T ss_pred --------------------------CCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccce
Confidence 3489999999999998888889999999999999999997766 888999999
Q ss_pred EECcCCcCc
Q 003084 706 LDLSYNKLS 714 (850)
Q Consensus 706 L~Ls~N~l~ 714 (850)
|++++|+++
T Consensus 338 L~l~~N~i~ 346 (347)
T 4fmz_A 338 ADFANQVIK 346 (347)
T ss_dssp ESSSCC---
T ss_pred eehhhhccc
Confidence 999999886
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=1.9e-31 Score=306.54 Aligned_cols=314 Identities=21% Similarity=0.250 Sum_probs=275.6
Q ss_pred CCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEE
Q 003084 383 CVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIV 462 (850)
Q Consensus 383 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 462 (850)
+.+++.+++++|.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|+++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 67899999999999988777889999999999999999988888999999999999999999998888999999999999
Q ss_pred CCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcC-CCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCC
Q 003084 463 MPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY-PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 541 (850)
Q Consensus 463 l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 541 (850)
+++|.+++..+..|..+++|+.|++++|.+.+..+..+. +++|+.|++++|.+++. .+..+++|+.|++++|.++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC----CGGGCTTCSEEECCSSCCS
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc----ChhhhhhhhhhhcccCccc
Confidence 999999987777789999999999999999988887665 78999999999998754 3566889999999999887
Q ss_pred CCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccc
Q 003084 542 GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSI 621 (850)
Q Consensus 542 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (850)
+ +...++|+.|++++|.+....+. + .++|+.|++++|.+++. ..+..
T Consensus 206 ~-----l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~~--~~l~~----------------------- 252 (597)
T 3oja_B 206 T-----LAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTDT--AWLLN----------------------- 252 (597)
T ss_dssp E-----EECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCCC--GGGGG-----------------------
T ss_pred c-----ccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCCC--hhhcc-----------------------
Confidence 4 34567899999999999854332 2 37899999999998763 22322
Q ss_pred cCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCC
Q 003084 622 SGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLR 701 (850)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 701 (850)
+++|++|+|++|.+++..|..|..+++|+.|+|++|.+++ +|..+..++
T Consensus 253 ------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~ 301 (597)
T 3oja_B 253 ------------------------------YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIP 301 (597)
T ss_dssp ------------------------------CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCT
T ss_pred ------------------------------CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCC
Confidence 3489999999999999999999999999999999999996 577788899
Q ss_pred CCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCccccCCCCccccCCCCCCCCCCCC
Q 003084 702 HIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLP 768 (850)
Q Consensus 702 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~ 768 (850)
+|+.|+|++|+++ .+|..+..+++|+.|++++|++++.. +..++.+..+.+++||+.|+|...
T Consensus 302 ~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~~ 364 (597)
T 3oja_B 302 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRA 364 (597)
T ss_dssp TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHH
T ss_pred CCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHHH
Confidence 9999999999999 67888899999999999999998654 356788889999999999987543
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=4.3e-30 Score=272.91 Aligned_cols=291 Identities=24% Similarity=0.312 Sum_probs=218.4
Q ss_pred CCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEEC
Q 003084 360 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYL 439 (850)
Q Consensus 360 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 439 (850)
+++.++++++.++ .+|..+ .++++.|++++|.+.+..+..|.++++|++|++++|.+.+..|..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 4667777777666 566543 356777777777777666667777888888888888887777777888888888888
Q ss_pred cCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCccccccc
Q 003084 440 NNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQL 519 (850)
Q Consensus 440 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~ 519 (850)
++|.++ .+|..+. ++|++|++++|.+.+..+..|.++++|+.|++++|.+... +..
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~~~ 163 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS---------------------GIE 163 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG---------------------GBC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc---------------------CcC
Confidence 888877 3444433 6788888888888877777788888888888888877521 111
Q ss_pred CccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccC
Q 003084 520 KEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNT 599 (850)
Q Consensus 520 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 599 (850)
...+..+++|+.|++++|.++. +|..+. ++|++|++++|++++..+..+..+++|++|++++|.+++..+..+...
T Consensus 164 -~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 239 (330)
T 1xku_A 164 -NGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 239 (330)
T ss_dssp -TTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred -hhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC
Confidence 2266777888888888888874 343332 788888888888887778888888888888888888887776666543
Q ss_pred ccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCC
Q 003084 600 TLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRI 679 (850)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 679 (850)
+ +|++|++++|+++ .+|..+..+++|
T Consensus 240 ~-----------------------------------------------------~L~~L~L~~N~l~-~lp~~l~~l~~L 265 (330)
T 1xku_A 240 P-----------------------------------------------------HLRELHLNNNKLV-KVPGGLADHKYI 265 (330)
T ss_dssp T-----------------------------------------------------TCCEEECCSSCCS-SCCTTTTTCSSC
T ss_pred C-----------------------------------------------------CCCEEECCCCcCc-cCChhhccCCCc
Confidence 3 7888999999888 677788888999
Q ss_pred CEEECcCCcCCccCcccCCCC------CCCCEEECcCCcCcc--cCChhhhcCCCCCEEEccCCc
Q 003084 680 QTLNLSHNNLTGTIPLTFSNL------RHIESLDLSYNKLSG--KIPRQLVDLNTLAIFIVAYNN 736 (850)
Q Consensus 680 ~~L~Ls~N~l~~~~~~~~~~l------~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~l~~N~ 736 (850)
++|++++|++++..+..|... .+|+.|++++|++.. ..|..|..+..++.+++++|+
T Consensus 266 ~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 999999999987777777543 788899999998864 567788888999999998884
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3e-30 Score=274.19 Aligned_cols=288 Identities=22% Similarity=0.289 Sum_probs=196.9
Q ss_pred CCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEEC
Q 003084 360 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYL 439 (850)
Q Consensus 360 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 439 (850)
.++.++++++.++ .+|..+ .++++.|++++|.+.+..+..|.++++|++|++++|.+.+..|..+.++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4667777777776 666554 356777777777777666667777777777777777777666777777777777777
Q ss_pred cCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCC--CCCCCcCCCcccEEEccCccccc
Q 003084 440 NNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISG--SLPSCFYPLSIKQVHLSKNMLHG 517 (850)
Q Consensus 440 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~--~~~~~~~~~~L~~L~l~~n~~~~ 517 (850)
++|.++ .+|..+. ++|++|++++|.+.+..+..|..+++|+.|++++|.+.. ..+.
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~------------------- 167 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG------------------- 167 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTT-------------------
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcc-------------------
Confidence 777776 3344333 677777777777776666667777777888777777642 2111
Q ss_pred ccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcc
Q 003084 518 QLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFD 597 (850)
Q Consensus 518 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 597 (850)
.+..+ +|+.|++++|++++ +|..+. ++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+.
T Consensus 168 -----~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 238 (332)
T 2ft3_A 168 -----AFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238 (332)
T ss_dssp -----SSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred -----cccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence 34444 66666666666664 333222 5677777777777766666677777777777777777666555554
Q ss_pred cCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCC
Q 003084 598 NTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLT 677 (850)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 677 (850)
..+ +|++|++++|+++ .+|..+..++
T Consensus 239 ~l~-----------------------------------------------------~L~~L~L~~N~l~-~lp~~l~~l~ 264 (332)
T 2ft3_A 239 FLP-----------------------------------------------------TLRELHLDNNKLS-RVPAGLPDLK 264 (332)
T ss_dssp GCT-----------------------------------------------------TCCEEECCSSCCC-BCCTTGGGCT
T ss_pred CCC-----------------------------------------------------CCCEEECCCCcCe-ecChhhhcCc
Confidence 432 6777777777777 5666777788
Q ss_pred CCCEEECcCCcCCccCcccCCCC------CCCCEEECcCCcCc--ccCChhhhcCCCCCEEEccCCc
Q 003084 678 RIQTLNLSHNNLTGTIPLTFSNL------RHIESLDLSYNKLS--GKIPRQLVDLNTLAIFIVAYNN 736 (850)
Q Consensus 678 ~L~~L~Ls~N~l~~~~~~~~~~l------~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~l~~N~ 736 (850)
+|+.|++++|++++..+..|... .+|+.|++++|++. ...|.+|..+++|+.+++++|+
T Consensus 265 ~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 88888888888877666666543 56788888888877 5677778888888888888774
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.2e-29 Score=269.52 Aligned_cols=251 Identities=29% Similarity=0.338 Sum_probs=162.9
Q ss_pred CCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeec
Q 003084 336 SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLL 415 (850)
Q Consensus 336 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 415 (850)
+++.++++++.++ .+|..+. ++|++|++++|.++ .++...+..+++|++|++++|.+.+..+..|.++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 3555555555554 3343332 45666666666665 444444445666666666666666666666777777777777
Q ss_pred cCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCcccc--CcchhccCCCCCCEEeccCCcCC
Q 003084 416 EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG--PIPVEFCRLDSLQILDISDNNIS 493 (850)
Q Consensus 416 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~ls~n~l~ 493 (850)
++|.+. .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.++. ..+..+..+ +|+.|++++|.+.
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 777776 3444333 678888888888876666677888888888888888753 556667766 8888888888877
Q ss_pred CCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhcc
Q 003084 494 GSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC 573 (850)
Q Consensus 494 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 573 (850)
+. |..+ .++|+.|++++|.+.+..+. .+..+++|+.|++++|++++..+..+..+++|+.|++++|+++ .+|..+.
T Consensus 186 ~l-~~~~-~~~L~~L~l~~n~i~~~~~~-~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 261 (332)
T 2ft3_A 186 GI-PKDL-PETLNELHLDHNKIQAIELE-DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP 261 (332)
T ss_dssp SC-CSSS-CSSCSCCBCCSSCCCCCCTT-SSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG
T ss_pred cc-Cccc-cCCCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh
Confidence 53 3222 24666666666666544333 5666777777777777777666666667777777777777776 5555666
Q ss_pred CCCCCCEEeCCCCcCCccCCCCccc
Q 003084 574 RLNQLQLLDLSDNNLHGLIPSCFDN 598 (850)
Q Consensus 574 ~l~~L~~L~Ls~n~l~~~~~~~~~~ 598 (850)
.+++|+.|++++|++++..+..|..
T Consensus 262 ~l~~L~~L~l~~N~l~~~~~~~~~~ 286 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITKVGVNDFCP 286 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred cCccCCEEECCCCCCCccChhHccc
Confidence 6777777777777766665555543
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=4.2e-29 Score=265.22 Aligned_cols=251 Identities=23% Similarity=0.333 Sum_probs=155.5
Q ss_pred CccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEE
Q 003084 311 RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLS 390 (850)
Q Consensus 311 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 390 (850)
+++.++++++.++ .+|..+ .+.+++|++++|.+++..+..|.+ +++|++|+
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~-------------------------l~~L~~L~ 82 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKN-------------------------LKNLHTLI 82 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTT-------------------------CTTCCEEE
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhcc-------------------------CCCCCEEE
Confidence 5566666666555 444432 234555555555554443334444 45555555
Q ss_pred ccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCcccc
Q 003084 391 LSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG 470 (850)
Q Consensus 391 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 470 (850)
+++|.+.+..|..|.++++|++|++++|.+. .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+..
T Consensus 83 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 159 (330)
T 1xku_A 83 LINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159 (330)
T ss_dssp CCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred CCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc
Confidence 5555555444555566666666666666665 3333332 567777777777776666667777777777777777743
Q ss_pred --CcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccc
Q 003084 471 --PIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI 548 (850)
Q Consensus 471 --~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 548 (850)
..+..+..+++|+.|++++|.+... |... .++|+.|++++|.+.+..+. .+..+++|+.|++++|.+++..+..+
T Consensus 160 ~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~-~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~ 236 (330)
T 1xku_A 160 SGIENGAFQGMKKLSYIRIADTNITTI-PQGL-PPSLTELHLDGNKITKVDAA-SLKGLNNLAKLGLSFNSISAVDNGSL 236 (330)
T ss_dssp GGBCTTGGGGCTTCCEEECCSSCCCSC-CSSC-CTTCSEEECTTSCCCEECTG-GGTTCTTCCEEECCSSCCCEECTTTG
T ss_pred cCcChhhccCCCCcCEEECCCCccccC-Cccc-cccCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCceeChhhc
Confidence 5566777788888888888877643 2222 15566666666666544333 66677777777777777776666667
Q ss_pred cCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcc
Q 003084 549 DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFD 597 (850)
Q Consensus 549 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 597 (850)
..+++|+.|++++|+++ .+|..+..+++|++|++++|++++..+..|.
T Consensus 237 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~ 284 (330)
T 1xku_A 237 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284 (330)
T ss_dssp GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred cCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcC
Confidence 77777777777777776 5566666677777777777777666555554
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3.8e-33 Score=311.96 Aligned_cols=185 Identities=19% Similarity=0.167 Sum_probs=132.9
Q ss_pred CCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcc----cCcccccCCCCCCEEEccCCcCCCCcchHHhhcCC-
Q 003084 310 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG----SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCV- 384 (850)
Q Consensus 310 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~- 384 (850)
++|++|++++|.++......++..+++|++|++++|.++. .++..+..+++|++|++++|.+.+..+..++..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 5678888888887744444445667889999999988874 34566777888999999999887545555665566
Q ss_pred ---CCCEEEccCCccCc----cccccccCCCCCCeeeccCCcCcccCCcC-----CCCCCCCcEEECcCCCCCCCC----
Q 003084 385 ---NLEFLSLSNNSLKG----HIFSRIFSLRNLRWLLLEGNHFVGEIPQS-----LSKCSSLKGLYLNNNNLSGKI---- 448 (850)
Q Consensus 385 ---~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~---- 448 (850)
+|++|++++|.+.. .++..+..+++|++|++++|.+....+.. ....++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 69999999998874 44777888888999999888876432222 223567888888888887543
Q ss_pred cccccCCCCCcEEECCCCccccCcchhcc-----CCCCCCEEeccCCcCCC
Q 003084 449 PRWLGNLKGLQHIVMPKNHLEGPIPVEFC-----RLDSLQILDISDNNISG 494 (850)
Q Consensus 449 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~ls~n~l~~ 494 (850)
+..+..+++|++|++++|.+.+..+..+. ..++|+.|++++|.+++
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 213 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS 213 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence 44556678888888888887654444433 35578888888887764
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=4.7e-31 Score=277.03 Aligned_cols=251 Identities=30% Similarity=0.503 Sum_probs=166.5
Q ss_pred CCCeeeccCCcCcc--cCCcCCCCCCCCcEEECcC-CCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEE
Q 003084 409 NLRWLLLEGNHFVG--EIPQSLSKCSSLKGLYLNN-NNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQIL 485 (850)
Q Consensus 409 ~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 485 (850)
+++.|++++|.+.+ .+|..+.++++|++|++++ |.+.+.+|..+.++++|++|++++|.+++..|..|..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 44455555555544 4455555555555555553 55555555555555555555555555555555556666666666
Q ss_pred eccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCC-CCCEEECcCCcC
Q 003084 486 DISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLS-QLSHLNLAHNNL 564 (850)
Q Consensus 486 ~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l 564 (850)
++++|.+.+..| . .+..+++|++|++++|++++..|..+..++ +|+.|++++|++
T Consensus 131 ~Ls~N~l~~~~p-----------------------~-~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 131 DFSYNALSGTLP-----------------------P-SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp ECCSSEEESCCC-----------------------G-GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred eCCCCccCCcCC-----------------------h-HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence 666665543222 1 445555666666666666555566666665 666777777766
Q ss_pred ccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccch
Q 003084 565 EGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIA 644 (850)
Q Consensus 565 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (850)
.+..|..+..++ |++|++++|.+++..|..|...+
T Consensus 187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~-------------------------------------------- 221 (313)
T 1ogq_A 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK-------------------------------------------- 221 (313)
T ss_dssp EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTS--------------------------------------------
T ss_pred eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCC--------------------------------------------
Confidence 666666666665 77777777777666555554433
Q ss_pred hcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcC
Q 003084 645 YAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL 724 (850)
Q Consensus 645 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 724 (850)
+|++|++++|++++.+|. +..+++|++|+|++|++++.+|..|..+++|+.|++++|++++.+|.. ..+
T Consensus 222 ---------~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l 290 (313)
T 1ogq_A 222 ---------NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL 290 (313)
T ss_dssp ---------CCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTG
T ss_pred ---------CCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccc
Confidence 677777777777765554 777888899999999888888888888899999999999998888876 788
Q ss_pred CCCCEEEccCCc-CcC
Q 003084 725 NTLAIFIVAYNN-LSG 739 (850)
Q Consensus 725 ~~L~~L~l~~N~-l~~ 739 (850)
++|+.+++++|+ ++|
T Consensus 291 ~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 291 QRFDVSAYANNKCLCG 306 (313)
T ss_dssp GGSCGGGTCSSSEEES
T ss_pred cccChHHhcCCCCccC
Confidence 889999999998 554
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=6.7e-33 Score=309.92 Aligned_cols=309 Identities=18% Similarity=0.125 Sum_probs=184.6
Q ss_pred CccEEEccCCcccccCchhhhhcCCCCcEEEccCCcCcCc----CccCcCCCCCccEEEccCCcCCcCCChhhhhcCC--
Q 003084 262 ELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGP----FRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILP-- 335 (850)
Q Consensus 262 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~-- 335 (850)
++++|+++++.+.......++..+++|++|++++|.+... ++..+..+++|++|++++|.+.+..+..++..++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 4666677766665554444456777888888888877642 2444667788888888888887544555555555
Q ss_pred --CCcEEEccCCcCcc----cCcccccCCCCCCEEEccCCcCCCCcchHHhh----cCCCCCEEEccCCccCccc----c
Q 003084 336 --SLVYFNISMNALDG----SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAM----CCVNLEFLSLSNNSLKGHI----F 401 (850)
Q Consensus 336 --~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----~l~~L~~L~l~~n~l~~~~----~ 401 (850)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+.. ..++|++|++++|.+.+.. +
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 68899999988874 45777888888999999988876433333322 2456888888888777533 4
Q ss_pred ccccCCCCCCeeeccCCcCcccCCcCCC-----CCCCCcEEECcCCCCCCC----CcccccCCCCCcEEECCCCccccCc
Q 003084 402 SRIFSLRNLRWLLLEGNHFVGEIPQSLS-----KCSSLKGLYLNNNNLSGK----IPRWLGNLKGLQHIVMPKNHLEGPI 472 (850)
Q Consensus 402 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~ 472 (850)
..+..+++|++|++++|.+....+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+..
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 243 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence 4455667777777777776543222222 244677777777766643 2444555666666666666655322
Q ss_pred -----chhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCcc
Q 003084 473 -----PVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 547 (850)
Q Consensus 473 -----~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 547 (850)
+..+..+++|+.|++++|.+++... ..++. .+..+++|++|++++|.+++..+..
T Consensus 244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~-------------------~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~ 303 (461)
T 1z7x_W 244 MAELCPGLLHPSSRLRTLWIWECGITAKGC-------------------GDLCR-VLRAKESLKELSLAGNELGDEGARL 303 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHH-------------------HHHHH-HHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCHHHH-------------------HHHHH-HHhhCCCcceEECCCCCCchHHHHH
Confidence 1112235555555555555432100 00122 3444566666666666654332222
Q ss_pred cc-----CCCCCCEEECcCCcCccC----CchhccCCCCCCEEeCCCCcCCc
Q 003084 548 ID-----GLSQLSHLNLAHNNLEGE----VPIQLCRLNQLQLLDLSDNNLHG 590 (850)
Q Consensus 548 ~~-----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~ 590 (850)
+. ..++|+.|++++|.+++. ++..+..+++|++|++++|.+++
T Consensus 304 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 355 (461)
T 1z7x_W 304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED 355 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred HHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc
Confidence 22 224666666666666543 23444455666666666665543
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=4.7e-28 Score=254.23 Aligned_cols=275 Identities=21% Similarity=0.270 Sum_probs=189.5
Q ss_pred CeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccC--cchhccCCCCCCEEecc
Q 003084 411 RWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGP--IPVEFCRLDSLQILDIS 488 (850)
Q Consensus 411 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~ls 488 (850)
+.++.+++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.++.. .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 34555555555 3343332 4667777777776654444566667777777777766532 24555566677777777
Q ss_pred CCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcC-ccccCCCCCCEEECcCCcCccC
Q 003084 489 DNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP-DWIDGLSQLSHLNLAHNNLEGE 567 (850)
Q Consensus 489 ~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~ 567 (850)
+|.+.+ ++. .+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+.
T Consensus 87 ~n~i~~------------------------l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 141 (306)
T 2z66_A 87 FNGVIT------------------------MSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 141 (306)
T ss_dssp SCSEEE------------------------EEE-EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred CCcccc------------------------Chh-hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc
Confidence 666541 222 45667777777777777775544 4677778888888888888777
Q ss_pred CchhccCCCCCCEEeCCCCcCCc-cCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhc
Q 003084 568 VPIQLCRLNQLQLLDLSDNNLHG-LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYA 646 (850)
Q Consensus 568 ~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (850)
.+..+..+++|++|++++|.+.+ ..|..+...
T Consensus 142 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l----------------------------------------------- 174 (306)
T 2z66_A 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL----------------------------------------------- 174 (306)
T ss_dssp STTTTTTCTTCCEEECTTCEEGGGEECSCCTTC-----------------------------------------------
T ss_pred chhhcccCcCCCEEECCCCccccccchhHHhhC-----------------------------------------------
Confidence 77777778888888888887765 455555443
Q ss_pred chhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCC-
Q 003084 647 YQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN- 725 (850)
Q Consensus 647 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~- 725 (850)
++|++|++++|++++..|..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++++..|..+..++
T Consensus 175 ------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~ 248 (306)
T 2z66_A 175 ------RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 248 (306)
T ss_dssp ------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCT
T ss_pred ------cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhc
Confidence 3788888888888877788888888888999988888877777888888899999999998888888888884
Q ss_pred CCCEEEccCCcCcCCCCC-Cc-cccCCCCccccCCCCCCCCCC
Q 003084 726 TLAIFIVAYNNLSGKIPE-WT-AQFATFNKSSYDGNPFLCGLP 766 (850)
Q Consensus 726 ~L~~L~l~~N~l~~~~p~-~~-~~~~~~~~~~~~~n~~~c~~~ 766 (850)
+|++|++++|+++|.++. ++ .++..........+...|..|
T Consensus 249 ~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p 291 (306)
T 2z66_A 249 SLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP 291 (306)
T ss_dssp TCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEES
T ss_pred cCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCc
Confidence 889999999988876542 11 222233334445556666433
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=2.4e-27 Score=262.15 Aligned_cols=252 Identities=21% Similarity=0.240 Sum_probs=196.6
Q ss_pred CCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccC
Q 003084 410 LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD 489 (850)
Q Consensus 410 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~ 489 (850)
.+.++..+..+. .+|..+. ++++.|++++|.+.+..+..|.++++|++|++++|.+.+..+..|.++++|+.|++++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 456677776666 4555443 5677788888887766667777777888888888777776677777777777777777
Q ss_pred CcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCC-cCccCC
Q 003084 490 NNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHN-NLEGEV 568 (850)
Q Consensus 490 n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~ 568 (850)
|++++ ++...|..+++|++|++++|.++...+..|.++++|+.|++++| .+....
T Consensus 122 n~l~~------------------------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 177 (440)
T 3zyj_A 122 NRLTT------------------------IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS 177 (440)
T ss_dssp SCCSS------------------------CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred CcCCe------------------------eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC
Confidence 77652 33336778889999999999988777778888999999999884 455445
Q ss_pred chhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcch
Q 003084 569 PIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQ 648 (850)
Q Consensus 569 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (850)
+..|.++++|++|++++|.++..+. +..
T Consensus 178 ~~~~~~l~~L~~L~L~~n~l~~~~~--~~~-------------------------------------------------- 205 (440)
T 3zyj_A 178 EGAFEGLSNLRYLNLAMCNLREIPN--LTP-------------------------------------------------- 205 (440)
T ss_dssp TTTTTTCSSCCEEECTTSCCSSCCC--CTT--------------------------------------------------
T ss_pred cchhhcccccCeecCCCCcCccccc--cCC--------------------------------------------------
Confidence 5578888999999999998875431 222
Q ss_pred hhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCC
Q 003084 649 GRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLA 728 (850)
Q Consensus 649 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 728 (850)
+++|++|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+
T Consensus 206 ---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 206 ---LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282 (440)
T ss_dssp ---CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred ---CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence 34788999999999888888888999999999999999888888888899999999999999877778888889999
Q ss_pred EEEccCCcCcCCCCC
Q 003084 729 IFIVAYNNLSGKIPE 743 (850)
Q Consensus 729 ~L~l~~N~l~~~~p~ 743 (850)
.|++++|++.|.+..
T Consensus 283 ~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 283 RIHLHHNPWNCNCDI 297 (440)
T ss_dssp EEECCSSCEECSSTT
T ss_pred EEEcCCCCccCCCCc
Confidence 999999988876653
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=3.2e-27 Score=262.14 Aligned_cols=252 Identities=21% Similarity=0.198 Sum_probs=194.1
Q ss_pred CCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccC
Q 003084 410 LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD 489 (850)
Q Consensus 410 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~ 489 (850)
...++.++..++ .+|..+. ++++.|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|+.|++++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 455666666665 3454443 4677777777777766666777777777777777777766666777777777777777
Q ss_pred CcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCC-cCccCC
Q 003084 490 NNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHN-NLEGEV 568 (850)
Q Consensus 490 n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~ 568 (850)
|.+++ ++...|..+++|++|++++|+++...+..|.++++|+.|++++| .+....
T Consensus 133 n~l~~------------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 188 (452)
T 3zyi_A 133 NWLTV------------------------IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS 188 (452)
T ss_dssp SCCSB------------------------CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred CcCCc------------------------cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC
Confidence 76652 33336788889999999999998777778889999999999884 555445
Q ss_pred chhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcch
Q 003084 569 PIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQ 648 (850)
Q Consensus 569 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (850)
+..|.++++|++|++++|.+++.. .+..
T Consensus 189 ~~~~~~l~~L~~L~L~~n~l~~~~--~~~~-------------------------------------------------- 216 (452)
T 3zyi_A 189 EGAFEGLFNLKYLNLGMCNIKDMP--NLTP-------------------------------------------------- 216 (452)
T ss_dssp TTTTTTCTTCCEEECTTSCCSSCC--CCTT--------------------------------------------------
T ss_pred hhhccCCCCCCEEECCCCcccccc--cccc--------------------------------------------------
Confidence 557888999999999999887642 1222
Q ss_pred hhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCC
Q 003084 649 GRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLA 728 (850)
Q Consensus 649 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 728 (850)
+++|++|+|++|++++..|..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..+..+++|+
T Consensus 217 ---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 293 (452)
T 3zyi_A 217 ---LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293 (452)
T ss_dssp ---CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred ---cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence 34789999999999888888899999999999999999988888899999999999999999877778888889999
Q ss_pred EEEccCCcCcCCCCC
Q 003084 729 IFIVAYNNLSGKIPE 743 (850)
Q Consensus 729 ~L~l~~N~l~~~~p~ 743 (850)
.|++++|++.|.+..
T Consensus 294 ~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 294 ELHLHHNPWNCDCDI 308 (452)
T ss_dssp EEECCSSCEECSTTT
T ss_pred EEEccCCCcCCCCCc
Confidence 999999998877653
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=4.9e-28 Score=259.49 Aligned_cols=283 Identities=21% Similarity=0.211 Sum_probs=180.1
Q ss_pred CCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEE
Q 003084 358 VIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGL 437 (850)
Q Consensus 358 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 437 (850)
++.....+++++.++ .+|..+ .++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..|.++++|++|
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 444556777777777 777654 3577788888887776666677777777777777777776666677777777777
Q ss_pred ECcCCCCCCCCcccccCCCCCcEEECCCCccccCcc-hhccCCCCCCEEeccCCc-CCCCCCCCcCCCcccEEEccCccc
Q 003084 438 YLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIP-VEFCRLDSLQILDISDNN-ISGSLPSCFYPLSIKQVHLSKNML 515 (850)
Q Consensus 438 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~L~~L~l~~n~~ 515 (850)
++++|.+++..+..+.++++|++|++++|++.+..+ ..+..+++|+.|++++|. +.
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~---------------------- 163 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT---------------------- 163 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC----------------------
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc----------------------
Confidence 777777775555556677777777777777764433 356666666666666663 32
Q ss_pred ccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCC
Q 003084 516 HGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSC 595 (850)
Q Consensus 516 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 595 (850)
.++...+.++++|++|++++|++++..|..+..+++|++|++++|.+....+..+..+++|+.|++++|.+++..+..
T Consensus 164 --~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 241 (353)
T 2z80_A 164 --KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE 241 (353)
T ss_dssp --EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-
T ss_pred --ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccc
Confidence 222225666777777777777777666777777777777777777776433333445677777777777766543332
Q ss_pred cccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccC
Q 003084 596 FDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGN 675 (850)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 675 (850)
+.. ...
T Consensus 242 l~~--------------------------------------------------------------------------~~~ 247 (353)
T 2z80_A 242 LST--------------------------------------------------------------------------GET 247 (353)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred ccc--------------------------------------------------------------------------ccc
Confidence 211 011
Q ss_pred CCCCCEEECcCCcCCc----cCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCC
Q 003084 676 LTRIQTLNLSHNNLTG----TIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP 742 (850)
Q Consensus 676 l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p 742 (850)
.+.++.++|+++.+++ .+|..+..+++|+.|++++|+++...+..|..+++|++|++++|++.|.+|
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 2334444444444433 245566666777777777777763333335677777777777777777665
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=3.9e-28 Score=260.32 Aligned_cols=257 Identities=20% Similarity=0.214 Sum_probs=158.7
Q ss_pred CCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccC
Q 003084 433 SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSK 512 (850)
Q Consensus 433 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~ 512 (850)
+|++|++++|.+++..+..+.++++|++|++++|.+++..+..|.++++|++|++++|.+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------------------ 114 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN------------------ 114 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS------------------
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc------------------
Confidence 45555555555554444455555555555555555555445555555555555555555542
Q ss_pred cccccccCccccCCCCCCcEEECcCCcCCCCcC-ccccCCCCCCEEECcCC-cCccCCchhccCCCCCCEEeCCCCcCCc
Q 003084 513 NMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP-DWIDGLSQLSHLNLAHN-NLEGEVPIQLCRLNQLQLLDLSDNNLHG 590 (850)
Q Consensus 513 n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 590 (850)
++...+..+++|++|++++|++++..+ ..+.++++|++|++++| .+.+..+..+.++++|++|++++|.+++
T Consensus 115 ------~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 115 ------LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp ------CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred ------CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 111134445555555555555553322 34555555555555555 3444444555556666666666666655
Q ss_pred cCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCC
Q 003084 591 LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIP 670 (850)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 670 (850)
..|..+...+ +|++|++++|+++...+
T Consensus 189 ~~~~~l~~l~-----------------------------------------------------~L~~L~l~~n~l~~~~~ 215 (353)
T 2z80_A 189 YEPKSLKSIQ-----------------------------------------------------NVSHLILHMKQHILLLE 215 (353)
T ss_dssp ECTTTTTTCS-----------------------------------------------------EEEEEEEECSCSTTHHH
T ss_pred cCHHHHhccc-----------------------------------------------------cCCeecCCCCccccchh
Confidence 5555444432 56666666666653322
Q ss_pred ccccCCCCCCEEECcCCcCCccCcccC---CCCCCCCEEECcCCcCcc----cCChhhhcCCCCCEEEccCCcCcCCCCC
Q 003084 671 PQIGNLTRIQTLNLSHNNLTGTIPLTF---SNLRHIESLDLSYNKLSG----KIPRQLVDLNTLAIFIVAYNNLSGKIPE 743 (850)
Q Consensus 671 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~l~~N~l~~~~p~ 743 (850)
..+..+++|+.|++++|.+++..+..+ .....++.++++++.+++ .+|..+..+++|+.|++++|+++...+.
T Consensus 216 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~ 295 (353)
T 2z80_A 216 IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDG 295 (353)
T ss_dssp HHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTT
T ss_pred hhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHH
Confidence 334456677777777777766544433 246778999999999887 4788899999999999999999954444
Q ss_pred CccccCCCCccccCCCCCCCCCC
Q 003084 744 WTAQFATFNKSSYDGNPFLCGLP 766 (850)
Q Consensus 744 ~~~~~~~~~~~~~~~n~~~c~~~ 766 (850)
.+..++.+..+.+++||+.|+||
T Consensus 296 ~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 296 IFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp TTTTCTTCCEEECCSSCBCCCHH
T ss_pred HHhcCCCCCEEEeeCCCccCcCC
Confidence 35788999999999999999997
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=3.1e-27 Score=247.99 Aligned_cols=256 Identities=23% Similarity=0.302 Sum_probs=216.7
Q ss_pred CcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCc
Q 003084 434 LKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKN 513 (850)
Q Consensus 434 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n 513 (850)
-+.++.+++.++ .+|..+. +++++|++++|.++...+..|.++++|+.|++++|.+...
T Consensus 9 ~~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------------------ 67 (306)
T 2z66_A 9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK------------------ 67 (306)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEE------------------
T ss_pred CCEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcc------------------
Confidence 357788888877 4454443 6788888888888866666678888888888888876521
Q ss_pred ccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCc-hhccCCCCCCEEeCCCCcCCccC
Q 003084 514 MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP-IQLCRLNQLQLLDLSDNNLHGLI 592 (850)
Q Consensus 514 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~ 592 (850)
+..+. .+..+++|++|++++|.++ ..|..+.++++|++|++++|++.+..+ ..+..+++|++|++++|.+.+..
T Consensus 68 ---~~~~~-~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 142 (306)
T 2z66_A 68 ---GCCSQ-SDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142 (306)
T ss_dssp ---EEEEH-HHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred ---cCccc-ccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc
Confidence 11122 4557899999999999998 456779999999999999999997665 67899999999999999998887
Q ss_pred CCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCcccc-CCCc
Q 003084 593 PSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG-HIPP 671 (850)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~ 671 (850)
+..+...+ +|++|++++|.+++ ..|.
T Consensus 143 ~~~~~~l~-----------------------------------------------------~L~~L~l~~n~l~~~~~~~ 169 (306)
T 2z66_A 143 NGIFNGLS-----------------------------------------------------SLEVLKMAGNSFQENFLPD 169 (306)
T ss_dssp TTTTTTCT-----------------------------------------------------TCCEEECTTCEEGGGEECS
T ss_pred hhhcccCc-----------------------------------------------------CCCEEECCCCccccccchh
Confidence 77776544 89999999999986 5788
Q ss_pred cccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCcccc-CC
Q 003084 672 QIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQF-AT 750 (850)
Q Consensus 672 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~-~~ 750 (850)
.+..+++|+.|++++|++++..|..|..+++|+.|++++|++++..+..+..+++|+.|++++|++++..|..+..+ ..
T Consensus 170 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~ 249 (306)
T 2z66_A 170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 249 (306)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTT
T ss_pred HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhcc
Confidence 99999999999999999999889999999999999999999998888899999999999999999999999888777 48
Q ss_pred CCccccCCCCCCCCCCCC
Q 003084 751 FNKSSYDGNPFLCGLPLP 768 (850)
Q Consensus 751 ~~~~~~~~n~~~c~~~l~ 768 (850)
+..+.+++||+.|+|+..
T Consensus 250 L~~L~L~~N~~~~~c~~~ 267 (306)
T 2z66_A 250 LAFLNLTQNDFACTCEHQ 267 (306)
T ss_dssp CCEEECTTCCEECSGGGH
T ss_pred CCEEEccCCCeecccChH
Confidence 899999999999999753
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.2e-26 Score=254.46 Aligned_cols=227 Identities=29% Similarity=0.288 Sum_probs=108.3
Q ss_pred CCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEec
Q 003084 408 RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 487 (850)
Q Consensus 408 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 487 (850)
++++.|++++|.+....+..|.++++|++|++++|.+.+..+..|.++++|++|++++|+++...+..|..+++|+.|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 34455555555555444444555555555555555554444444555555555555555554444444445555555555
Q ss_pred cCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCC-cCCCCcCccccCCCCCCEEECcCCcCcc
Q 003084 488 SDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYN-YLNGSIPDWIDGLSQLSHLNLAHNNLEG 566 (850)
Q Consensus 488 s~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 566 (850)
++|.+.. ++...|..+++|+.|++++| .+....+..|.++++|++|++++|+++.
T Consensus 144 ~~N~i~~------------------------~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 144 RNNPIES------------------------IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199 (440)
T ss_dssp CSCCCCE------------------------ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred CCCcccc------------------------cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence 5544431 11123444455555555542 2222222344455555555555555542
Q ss_pred CCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhc
Q 003084 567 EVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYA 646 (850)
Q Consensus 567 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (850)
+| .+..+++|+.|++++|++++..+..|..+.
T Consensus 200 -~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~---------------------------------------------- 231 (440)
T 3zyj_A 200 -IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLM---------------------------------------------- 231 (440)
T ss_dssp -CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCT----------------------------------------------
T ss_pred -cc-ccCCCcccCEEECCCCccCccChhhhccCc----------------------------------------------
Confidence 22 244445555555555555544444443322
Q ss_pred chhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcC
Q 003084 647 YQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL 713 (850)
Q Consensus 647 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 713 (850)
+|++|+|++|++++..+..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|++
T Consensus 232 -------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 232 -------HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp -------TCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred -------cCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 455555555555544444455555555555555555544444445555555555555544
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=2.1e-26 Score=255.43 Aligned_cols=247 Identities=24% Similarity=0.247 Sum_probs=155.6
Q ss_pred CCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCC
Q 003084 386 LEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPK 465 (850)
Q Consensus 386 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 465 (850)
...++.++..+.. +|..+. +++++|++++|.+.+..+..|.++++|+.|++++|.+++..+..|.++++|++|++++
T Consensus 56 ~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 3456666555552 333332 4666777777776666666666667777777777766666666666667777777777
Q ss_pred CccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcC-CcCCCCc
Q 003084 466 NHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSY-NYLNGSI 544 (850)
Q Consensus 466 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~ 544 (850)
|.+++..+..|..+++|++|++++|.+.. ++...|..+++|+.|++++ +.+....
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------------~~~~~~~~l~~L~~L~l~~~~~l~~i~ 188 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIES------------------------IPSYAFNRVPSLMRLDLGELKKLEYIS 188 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCE------------------------ECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcce------------------------eCHhHHhcCCcccEEeCCCCCCccccC
Confidence 76666555566666666666666666542 2222556666677777766 3343333
Q ss_pred CccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCC
Q 003084 545 PDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGP 624 (850)
Q Consensus 545 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (850)
+..|.++++|+.|++++|++++. | .+..+++|+.|++++|.+++..+..|..+.
T Consensus 189 ~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------------------------ 242 (452)
T 3zyi_A 189 EGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLS------------------------ 242 (452)
T ss_dssp TTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCT------------------------
T ss_pred hhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCcc------------------------
Confidence 34566666777777777766643 2 355666677777777766666655555433
Q ss_pred CCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCC
Q 003084 625 QGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIE 704 (850)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 704 (850)
+|++|++++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+
T Consensus 243 -----------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 293 (452)
T 3zyi_A 243 -----------------------------SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293 (452)
T ss_dssp -----------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred -----------------------------CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence 666777777777666666666667777777777777666666666667777
Q ss_pred EEECcCCcCc
Q 003084 705 SLDLSYNKLS 714 (850)
Q Consensus 705 ~L~Ls~N~l~ 714 (850)
.|+|++|++.
T Consensus 294 ~L~L~~Np~~ 303 (452)
T 3zyi_A 294 ELHLHHNPWN 303 (452)
T ss_dssp EEECCSSCEE
T ss_pred EEEccCCCcC
Confidence 7777777654
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.2e-26 Score=240.78 Aligned_cols=251 Identities=24% Similarity=0.246 Sum_probs=159.9
Q ss_pred cEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcc
Q 003084 435 KGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNM 514 (850)
Q Consensus 435 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~ 514 (850)
+.++.+++.++ .+|..+ .+++++|++++|.+++..+..|..+++|++|++++|.+.+..
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~------------------ 72 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID------------------ 72 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC------------------
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC------------------
Confidence 34555555554 223222 245556666666555555555555666666666665554221
Q ss_pred cccccCccccCCCCCCcEEECcCCc-CCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCC
Q 003084 515 LHGQLKEGTFFNCSSLVTLDLSYNY-LNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP 593 (850)
Q Consensus 515 ~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 593 (850)
+ ..|..+++|++|++++|. ++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+
T Consensus 73 -----~-~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 146 (285)
T 1ozn_A 73 -----A-AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146 (285)
T ss_dssp -----T-TTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred -----H-hhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH
Confidence 1 145566666666666665 555556666667777777777777766666666677777777777777766555
Q ss_pred CCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccc
Q 003084 594 SCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI 673 (850)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~ 673 (850)
..|...+ +|++|++++|++++..+..|
T Consensus 147 ~~~~~l~-----------------------------------------------------~L~~L~l~~n~l~~~~~~~~ 173 (285)
T 1ozn_A 147 DTFRDLG-----------------------------------------------------NLTHLFLHGNRISSVPERAF 173 (285)
T ss_dssp TTTTTCT-----------------------------------------------------TCCEEECCSSCCCEECTTTT
T ss_pred hHhccCC-----------------------------------------------------CccEEECCCCcccccCHHHh
Confidence 5554433 67777777777776666667
Q ss_pred cCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCccccCCCCc
Q 003084 674 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNK 753 (850)
Q Consensus 674 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~ 753 (850)
..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..+..+..+++|+.|++++|++.+.++.. ..+..+..
T Consensus 174 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~ 252 (285)
T 1ozn_A 174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQK 252 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHH
T ss_pred cCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHh
Confidence 77888888888888888777788888888888888888888766677888888888888888887766541 11122333
Q ss_pred cccCCCCCCCCCC
Q 003084 754 SSYDGNPFLCGLP 766 (850)
Q Consensus 754 ~~~~~n~~~c~~~ 766 (850)
.....+...|..|
T Consensus 253 ~~~~~~~~~c~~p 265 (285)
T 1ozn_A 253 FRGSSSEVPCSLP 265 (285)
T ss_dssp CCSEECCCBEEES
T ss_pred cccccCccccCCc
Confidence 3344555555443
No 58
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=6.7e-29 Score=286.94 Aligned_cols=431 Identities=17% Similarity=0.130 Sum_probs=226.3
Q ss_pred cccCCCCCCCEEEcCCCCCc-----------c---cchhhhh-ccCCCCcEEeCCCCcCCCcccCCcCCC-CC-cccEEe
Q 003084 25 QELHNFTNLEYLTLDDSSLH-----------I---SLLQSIG-SIFPSLKNLSMSGCEVNGVLSGQGFPH-FK-SLEHLD 87 (850)
Q Consensus 25 ~~~~~l~~L~~L~Ls~n~i~-----------~---~~~~~l~-~~~~~L~~L~Ls~~~~~~~~~~~~~~~-l~-~L~~L~ 87 (850)
..+.++++|++|+++++... + .....+. . +++|++|+|++|.+.+..+. .+.+ ++ +|++|+
T Consensus 67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~L~~L~L~~~~i~~~~~~-~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNN-LRQLKSVHFRRMIVSDLDLD-RLAKARADDLETLK 144 (592)
T ss_dssp HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHH-CTTCCEEEEESCBCCHHHHH-HHHHHHGGGCCEEE
T ss_pred HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhh-CCCCCeEEeeccEecHHHHH-HHHHhccccCcEEE
Confidence 44566777777777664211 0 0112222 4 78888888888877654332 3443 33 488888
Q ss_pred cccCCcc-cccchhhHhhhcCCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccc----cccCccccCCCCC
Q 003084 88 MRFARIA-LNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLR----GSLPWCLANTTSL 162 (850)
Q Consensus 88 L~~~~~~-~~~~~~~~l~~~l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L 162 (850)
+ .+|. +.......+...+++|++|++++|.+.+.+....+.....+++|++|++++|.+. ..++..+.++++|
T Consensus 145 L--~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L 222 (592)
T 3ogk_B 145 L--DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSL 222 (592)
T ss_dssp E--ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTC
T ss_pred C--cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCC
Confidence 8 5554 3322223333338888888888887755222211123456788888888888876 3445556778888
Q ss_pred CEEECCCCcCcCCCCcccccCCCCCCeEECcCCcCc--CCCCcccccCCCCccEEEccCCccccccccccCCCCccceeE
Q 003084 163 RILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR--IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKS 240 (850)
Q Consensus 163 ~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~--~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~ 240 (850)
++|++++|.+. .++. .+..+++|++|+++..... .......+..+++|+.++++.+....
T Consensus 223 ~~L~L~~~~~~-~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~---------------- 284 (592)
T 3ogk_B 223 VSVKVGDFEIL-ELVG-FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE---------------- 284 (592)
T ss_dssp CEEECSSCBGG-GGHH-HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTT----------------
T ss_pred cEEeccCccHH-HHHH-HHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhH----------------
Confidence 88888888887 5665 7888888888888753222 11222345667777777776542211
Q ss_pred EEccCCCCCCcccCccccCCCCccEEEccCCcccccCchhhhhcCCCCcEEEccCCcCcCcCccCcCCCCCccEEEccC-
Q 003084 241 LSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSN- 319 (850)
Q Consensus 241 L~ls~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~- 319 (850)
+|..+..+++|++|++++|.+.+.....++..+++|++|+++++......+.....+++|++|++++
T Consensus 285 ------------l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g 352 (592)
T 3ogk_B 285 ------------MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERG 352 (592)
T ss_dssp ------------GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECC
T ss_pred ------------HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecC
Confidence 2223333344444444444433322222234444444444442111111111123344455555552
Q ss_pred ----------CcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccC-CCCCCEEEcc----CCcCCCC-----cchHH
Q 003084 320 ----------NNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGN-VIFLQFLDLS----NNKLTGE-----IPDHL 379 (850)
Q Consensus 320 ----------n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~----~n~l~~~-----~~~~~ 379 (850)
+.+++.....+...+++|++|+++.+.+++..+..+.. +++|++|+++ .|.+++. ++. .
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~-~ 431 (592)
T 3ogk_B 353 ADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS-L 431 (592)
T ss_dssp CCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH-H
T ss_pred ccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH-H
Confidence 23332212222333556666666555555444444433 5556666664 4445421 111 2
Q ss_pred hhcCCCCCEEEccCCc--cCcccccccc-CCCCCCeeeccCCcCccc-CCcCCCCCCCCcEEECcCCCCCCC-CcccccC
Q 003084 380 AMCCVNLEFLSLSNNS--LKGHIFSRIF-SLRNLRWLLLEGNHFVGE-IPQSLSKCSSLKGLYLNNNNLSGK-IPRWLGN 454 (850)
Q Consensus 380 ~~~l~~L~~L~l~~n~--l~~~~~~~~~-~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~ 454 (850)
+.++++|++|++++|. +.+.....+. .+++|++|++++|++++. ++..+..+++|++|++++|.+++. .+.....
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 511 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK 511 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence 3346666666665432 4433333332 356666666666666542 233345566677777776665432 2223345
Q ss_pred CCCCcEEECCCCccccCcchhc-cCCCCCCEEeccCC
Q 003084 455 LKGLQHIVMPKNHLEGPIPVEF-CRLDSLQILDISDN 490 (850)
Q Consensus 455 l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~ls~n 490 (850)
+++|++|++++|+++......+ ..++.+....+..+
T Consensus 512 l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 512 LPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred cCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 6667777777776654433322 24555555544443
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=2.2e-26 Score=238.63 Aligned_cols=254 Identities=22% Similarity=0.224 Sum_probs=196.5
Q ss_pred CeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCC
Q 003084 411 RWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDN 490 (850)
Q Consensus 411 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n 490 (850)
+.++.+++.+. .+|..+ .+++++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 45666666665 344433 357888888888887666677788888888888888887777778888888888888888
Q ss_pred c-CCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCc
Q 003084 491 N-ISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP 569 (850)
Q Consensus 491 ~-l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 569 (850)
. +... +...+..+++|++|++++|.+++..+..+.++++|++|++++|++++..+
T Consensus 91 ~~l~~~------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 146 (285)
T 1ozn_A 91 AQLRSV------------------------DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146 (285)
T ss_dssp TTCCCC------------------------CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCcccc------------------------CHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH
Confidence 6 5422 22256777888888888888887777788888888888888888887777
Q ss_pred hhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchh
Q 003084 570 IQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQG 649 (850)
Q Consensus 570 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (850)
..+..+++|++|++++|++++..+..|....
T Consensus 147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------------------------------------------------- 177 (285)
T 1ozn_A 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLH------------------------------------------------- 177 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCT-------------------------------------------------
T ss_pred hHhccCCCccEEECCCCcccccCHHHhcCcc-------------------------------------------------
Confidence 7788888999999999988877766665533
Q ss_pred hhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCE
Q 003084 650 RVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAI 729 (850)
Q Consensus 650 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 729 (850)
+|++|++++|++++..|..|..+++|+.|++++|++++..+..+..+++|+.|++++|++....+.. .-...++.
T Consensus 178 ----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~ 252 (285)
T 1ozn_A 178 ----SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQK 252 (285)
T ss_dssp ----TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHH
T ss_pred ----ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHh
Confidence 7999999999999888889999999999999999999887788999999999999999988644321 11233455
Q ss_pred EEccCCcCcCCCCCCc
Q 003084 730 FIVAYNNLSGKIPEWT 745 (850)
Q Consensus 730 L~l~~N~l~~~~p~~~ 745 (850)
+..+.+.+.|..|..+
T Consensus 253 ~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 253 FRGSSSEVPCSLPQRL 268 (285)
T ss_dssp CCSEECCCBEEESGGG
T ss_pred cccccCccccCCchHh
Confidence 5577888888888754
No 60
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=7.5e-29 Score=286.52 Aligned_cols=426 Identities=13% Similarity=0.117 Sum_probs=263.2
Q ss_pred hhhccCCCCcEEeCCCCcCC---CcccCCcCC------------CCCcccEEecccCCcccccchhhHhhhcCCC-CcEE
Q 003084 50 SIGSIFPSLKNLSMSGCEVN---GVLSGQGFP------------HFKSLEHLDMRFARIALNTSFLQIIGESMPS-LKYL 113 (850)
Q Consensus 50 ~l~~~~~~L~~L~Ls~~~~~---~~~~~~~~~------------~l~~L~~L~L~~~~~~~~~~~~~~l~~~l~~-L~~L 113 (850)
.+.. +++|++|++++|... +.+|. .+. ++++|++|+| +++.+++..+..+...+++ |++|
T Consensus 68 ~~~~-~~~L~~L~L~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~~~~L~~L~L--~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 68 LSRR-FPNLRSLKLKGKPRAAMFNLIPE-NWGGYVTPWVTEISNNLRQLKSVHF--RRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp HHHH-CTTCSEEEEECSCGGGGGTCSCT-TSCCBCHHHHHHHHHHCTTCCEEEE--ESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred HHHh-CCCCeEEEecCCcchhhcccccc-cccccchHHHHHHHhhCCCCCeEEe--eccEecHHHHHHHHHhccccCcEE
Confidence 4445 888888888776431 12221 111 6788888888 6777777666666653344 8888
Q ss_pred EccCCC-CCCCCCccCCcCCCCCCCCCEEEccCCccccc----cCccccCCCCCCEEECCCCcCc----CCCCcccccCC
Q 003084 114 SLSGST-LGTNSSRILDQGLCPLAHLQELYIDNNDLRGS----LPWCLANTTSLRILDVSFNQLT----GSISSSPLVHL 184 (850)
Q Consensus 114 ~ls~n~-i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~i~----~~i~~~~~~~l 184 (850)
++++|. +.. ..+ ......+++|++|+|++|.+.+. ++..+.++++|++|++++|.++ +.++. .+.++
T Consensus 144 ~L~~~~~~~~--~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~ 219 (592)
T 3ogk_B 144 KLDKCSGFTT--DGL-LSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLET-IARNC 219 (592)
T ss_dssp EEESCEEEEH--HHH-HHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHH-HHHHC
T ss_pred ECcCCCCcCH--HHH-HHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHH-HHhhC
Confidence 888876 111 011 11223678888888888877654 3334567788888888888875 12222 34577
Q ss_pred CCCCeEECcCCcCcCCCCcccccCCCCccEEEccCCccccccccccCCCCccceeEEEccCCCCCCcccCccccCCCCcc
Q 003084 185 TSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELK 264 (850)
Q Consensus 185 ~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~ 264 (850)
++|++|++++|.+.+ .+ ..+..+++|+.++++....... ....+..+..+++|+
T Consensus 220 ~~L~~L~L~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~~~------------------------~~~~~~~l~~~~~L~ 273 (592)
T 3ogk_B 220 RSLVSVKVGDFEILE-LV-GFFKAAANLEEFCGGSLNEDIG------------------------MPEKYMNLVFPRKLC 273 (592)
T ss_dssp TTCCEEECSSCBGGG-GH-HHHHHCTTCCEEEECBCCCCTT------------------------CTTSSSCCCCCTTCC
T ss_pred CCCcEEeccCccHHH-HH-HHHhhhhHHHhhcccccccccc------------------------hHHHHHHhhcccccc
Confidence 888888888887764 22 4466778888888765321100 011223345566777
Q ss_pred EEEccCCcccccCchhhhhcCCCCcEEEccCCcCcCcCc-cCcCCCCCccEEEccCCcCCcCCChhhhhcCCCCcEEEcc
Q 003084 265 EAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFR-LPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNIS 343 (850)
Q Consensus 265 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~ 343 (850)
.++++++. ...+|.. +..+++|++|++++|.+.+... ..+..+++|+.|+++ +.+.+.....+...+++|++|+++
T Consensus 274 ~L~l~~~~-~~~l~~~-~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 274 RLGLSYMG-PNEMPIL-FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp EEEETTCC-TTTGGGG-GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred ccCccccc-hhHHHHH-HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEee
Confidence 77776642 2333433 4677888888888887654332 225678888888888 444333333444557788888888
Q ss_pred C-----------CcCccc-CcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEcc----CCccCcc-----ccc
Q 003084 344 M-----------NALDGS-IPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLS----NNSLKGH-----IFS 402 (850)
Q Consensus 344 ~-----------n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~----~n~l~~~-----~~~ 402 (850)
+ +.+++. .+.....+++|++|+++.|.+++..+..+...+++|+.|+++ .|.+++. ++.
T Consensus 351 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~ 430 (592)
T 3ogk_B 351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS 430 (592)
T ss_dssp CCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH
T ss_pred cCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH
Confidence 3 444432 222234578888888888887766666666568888888886 4556542 333
Q ss_pred cccCCCCCCeeeccCCc--CcccCCcCC-CCCCCCcEEECcCCCCCCC-CcccccCCCCCcEEECCCCccccCc-chhcc
Q 003084 403 RIFSLRNLRWLLLEGNH--FVGEIPQSL-SKCSSLKGLYLNNNNLSGK-IPRWLGNLKGLQHIVMPKNHLEGPI-PVEFC 477 (850)
Q Consensus 403 ~~~~l~~L~~L~l~~n~--l~~~~~~~~-~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~ 477 (850)
.+.++++|++|+++.|. +++..+..+ ..+++|++|++++|.+++. .+..+..+++|++|++++|.+++.. +..+.
T Consensus 431 ~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 510 (592)
T 3ogk_B 431 LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVT 510 (592)
T ss_dssp HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHH
T ss_pred HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHH
Confidence 35667888888887543 443322222 2467888888888887652 3445567788888888888876442 33345
Q ss_pred CCCCCCEEeccCCcCCCCCCCCc--CCCcccEEEccC
Q 003084 478 RLDSLQILDISDNNISGSLPSCF--YPLSIKQVHLSK 512 (850)
Q Consensus 478 ~l~~L~~L~ls~n~l~~~~~~~~--~~~~L~~L~l~~ 512 (850)
.+++|+.|++++|++++.....+ ..+.+....+..
T Consensus 511 ~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 511 KLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp HCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred hcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence 67888888888888765433222 244454444443
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.5e-27 Score=251.03 Aligned_cols=246 Identities=21% Similarity=0.201 Sum_probs=169.9
Q ss_pred CCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEc
Q 003084 431 CSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHL 510 (850)
Q Consensus 431 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l 510 (850)
+++|++|++++|.+++..|..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++.. ..++|+.|++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l 106 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----VGPSIETLHA 106 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE----ECTTCCEEEC
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc----CCCCcCEEEC
Confidence 3344444444444444444444444444444444444443322 444445555555555444221 1244555555
Q ss_pred cCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhcc-CCCCCCEEeCCCCcCC
Q 003084 511 SKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC-RLNQLQLLDLSDNNLH 589 (850)
Q Consensus 511 ~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~ 589 (850)
++|.+++..+ ..+++|+.|++++|++++..+..+..+++|++|++++|.+.+..+..+. .+++|++|++++|.++
T Consensus 107 ~~n~l~~~~~----~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 107 ANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp CSSCCSEEEE----CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCccCCcCc----cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 5555543322 2367899999999999987777888899999999999999877776664 6899999999999987
Q ss_pred ccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCC
Q 003084 590 GLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHI 669 (850)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 669 (850)
+..+..+ +++|++|++++|++++.
T Consensus 183 ~~~~~~~-------------------------------------------------------l~~L~~L~Ls~N~l~~l- 206 (317)
T 3o53_A 183 DVKGQVV-------------------------------------------------------FAKLKTLDLSSNKLAFM- 206 (317)
T ss_dssp EEECCCC-------------------------------------------------------CTTCCEEECCSSCCCEE-
T ss_pred ccccccc-------------------------------------------------------cccCCEEECCCCcCCcc-
Confidence 6532221 23799999999999854
Q ss_pred CccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCc-ccCChhhhcCCCCCEEEccCC-cCcCCCCC
Q 003084 670 PPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS-GKIPRQLVDLNTLAIFIVAYN-NLSGKIPE 743 (850)
Q Consensus 670 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~l~~N-~l~~~~p~ 743 (850)
|..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|++. +.+|..+..+++|+.+++++| .+.|..|.
T Consensus 207 ~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 207 GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 445889999999999999998 46778889999999999999998 778888899999999998854 56665544
No 62
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=1e-25 Score=237.69 Aligned_cols=235 Identities=22% Similarity=0.316 Sum_probs=152.4
Q ss_pred CCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEe
Q 003084 407 LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILD 486 (850)
Q Consensus 407 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 486 (850)
.++++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.+. .+|..+..+++|+.|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 467888888888887 66777777888888888888888 77777888888888888888887 5677788888888888
Q ss_pred ccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCcc
Q 003084 487 ISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG 566 (850)
Q Consensus 487 ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 566 (850)
+++|++.+.+|..+.. . ... +.+.++++|+.|++++|+++ .+|..+..+++|++|++++|++++
T Consensus 157 L~~n~~~~~~p~~~~~-----~---------~~~-~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~ 220 (328)
T 4fcg_A 157 IRACPELTELPEPLAS-----T---------DAS-GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA 220 (328)
T ss_dssp EEEETTCCCCCSCSEE-----E---------C-C-CCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred CCCCCCccccChhHhh-----c---------cch-hhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc
Confidence 8887776555442210 0 000 12334444555555554444 334444444444444444444442
Q ss_pred CCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhc
Q 003084 567 EVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYA 646 (850)
Q Consensus 567 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (850)
+|..+..++
T Consensus 221 -l~~~l~~l~---------------------------------------------------------------------- 229 (328)
T 4fcg_A 221 -LGPAIHHLP---------------------------------------------------------------------- 229 (328)
T ss_dssp -CCGGGGGCT----------------------------------------------------------------------
T ss_pred -CchhhccCC----------------------------------------------------------------------
Confidence 222333333
Q ss_pred chhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCC
Q 003084 647 YQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNT 726 (850)
Q Consensus 647 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 726 (850)
+|++|++++|++.+.+|..|+.+++|+.|+|++|++.+.+|..++.+++|+.|+|++|++.+.+|+.+.++++
T Consensus 230 -------~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 230 -------KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302 (328)
T ss_dssp -------TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred -------CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence 5555666666555566666666777777777777766667766777777777777777777777777777777
Q ss_pred CCEEEccCCcCc
Q 003084 727 LAIFIVAYNNLS 738 (850)
Q Consensus 727 L~~L~l~~N~l~ 738 (850)
|+.+++..|.+.
T Consensus 303 L~~l~l~~~~~~ 314 (328)
T 4fcg_A 303 NCIILVPPHLQA 314 (328)
T ss_dssp TCEEECCGGGSC
T ss_pred ceEEeCCHHHHH
Confidence 777776655443
No 63
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=2.4e-25 Score=234.83 Aligned_cols=226 Identities=20% Similarity=0.236 Sum_probs=182.5
Q ss_pred CCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEE
Q 003084 383 CVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIV 462 (850)
Q Consensus 383 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 462 (850)
.++++.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 578999999999998 67777888999999999999999 78888999999999999999999 7788999999999999
Q ss_pred CCCCccccCcchhccC---------CCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEE
Q 003084 463 MPKNHLEGPIPVEFCR---------LDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTL 533 (850)
Q Consensus 463 l~~n~l~~~~~~~~~~---------l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 533 (850)
+++|.+.+..|..+.. +++|+.|++++|.++ .+|. .+..+++|++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~------------------------~lp~-~l~~l~~L~~L 211 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR------------------------SLPA-SIANLQNLKSL 211 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC------------------------CCCG-GGGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC------------------------cchH-hhcCCCCCCEE
Confidence 9999888888776654 566666666665554 4444 68889999999
Q ss_pred ECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCC
Q 003084 534 DLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDK 613 (850)
Q Consensus 534 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (850)
++++|++++ +|..+..+++|++|++++|++.+.+|..+..+++|++|++++|++.+.+|..+..++
T Consensus 212 ~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~------------- 277 (328)
T 4fcg_A 212 KIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT------------- 277 (328)
T ss_dssp EEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT-------------
T ss_pred EccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC-------------
Confidence 999999995 566799999999999999999988888888888888888888877666665554432
Q ss_pred CCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCC
Q 003084 614 PFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLT 690 (850)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 690 (850)
+|++|+|++|++.+.+|..++++++|+.+++..+.+.
T Consensus 278 ----------------------------------------~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 278 ----------------------------------------QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp ----------------------------------------TCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred ----------------------------------------CCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 5666666666666666666666666666666655443
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.8e-26 Score=256.91 Aligned_cols=235 Identities=21% Similarity=0.185 Sum_probs=136.2
Q ss_pred CCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEcc
Q 003084 432 SSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLS 511 (850)
Q Consensus 432 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~ 511 (850)
++|+.|++++|.+++..|..|..+++|++|++++|.+++..+ +..+++|+.|++++|.+++..+ .++|+.|+++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~ 107 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAA 107 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEECc
Confidence 355555555555555555555555556666665555554433 5555566666666665543211 1344444444
Q ss_pred CcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhcc-CCCCCCEEeCCCCcCCc
Q 003084 512 KNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC-RLNQLQLLDLSDNNLHG 590 (850)
Q Consensus 512 ~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~ 590 (850)
+|.+.+..+ ..+++|+.|++++|.+++..|..+.++++|+.|++++|.+++..|..+. .+++|+.|+|++|.+++
T Consensus 108 ~N~l~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 108 NNNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp SSCCCCEEE----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCcCCCCCc----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 444433322 2346677777777777766666677777777777777777766666654 56777777777777665
Q ss_pred cCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCC
Q 003084 591 LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIP 670 (850)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 670 (850)
..+..+ +++|++|+|++|.+++..|
T Consensus 184 ~~~~~~-------------------------------------------------------l~~L~~L~Ls~N~l~~~~~ 208 (487)
T 3oja_A 184 VKGQVV-------------------------------------------------------FAKLKTLDLSSNKLAFMGP 208 (487)
T ss_dssp EECCCC-------------------------------------------------------CTTCCEEECCSSCCCEECG
T ss_pred cccccc-------------------------------------------------------CCCCCEEECCCCCCCCCCH
Confidence 422211 2256666666666664333
Q ss_pred ccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCc-ccCChhhhcCCCCCEEEcc
Q 003084 671 PQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS-GKIPRQLVDLNTLAIFIVA 733 (850)
Q Consensus 671 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~l~ 733 (850)
.+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus 209 -~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 209 -EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp -GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred -hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 36666666666666666663 4555666666666666666665 4455555555555554443
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=7.6e-24 Score=240.09 Aligned_cols=67 Identities=25% Similarity=0.350 Sum_probs=43.8
Q ss_pred cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCC
Q 003084 654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN 725 (850)
Q Consensus 654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 725 (850)
+|+.|++++|+++ .+|. .+++|+.|+|++|+++ .+|..+..+++|+.|+|++|++++..|..+..++
T Consensus 242 ~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 242 ELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred cCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 5666777777666 3443 4566777777777776 4566677777777777777777766666655544
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=6e-26 Score=252.74 Aligned_cols=234 Identities=26% Similarity=0.239 Sum_probs=163.8
Q ss_pred CCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECC
Q 003084 385 NLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 464 (850)
Q Consensus 385 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 464 (850)
+|++|++++|.+.+..|..|..+++|++|++++|.+++..| +..+++|++|++++|.++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~------------------- 93 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ------------------- 93 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-------------------
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-------------------
Confidence 55555555555555555555555555555555555554333 445555555555555544
Q ss_pred CCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCc
Q 003084 465 KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSI 544 (850)
Q Consensus 465 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 544 (850)
+..+ .++|+.|++++|.+.+..+.. +++|+.|++++|.+++..+. .+..+++|+.|++++|.+++..
T Consensus 94 -----~l~~-----~~~L~~L~L~~N~l~~~~~~~--l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~ 160 (487)
T 3oja_A 94 -----ELLV-----GPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDTVN 160 (487)
T ss_dssp -----EEEE-----CTTCCEEECCSSCCCCEEECC--CSSCEEEECCSSCCCSGGGB-CGGGGSSEEEEECTTSCCCEEE
T ss_pred -----CCCC-----CCCcCEEECcCCcCCCCCccc--cCCCCEEECCCCCCCCCCch-hhcCCCCCCEEECCCCCCCCcC
Confidence 2211 144455555555444333221 24555555555555554444 7788999999999999999888
Q ss_pred Ccccc-CCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccC
Q 003084 545 PDWID-GLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISG 623 (850)
Q Consensus 545 ~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (850)
|..+. .+++|+.|+|++|.+++..+ ...+++|+.|+|++|.+++.++. +..
T Consensus 161 ~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~------------------------- 212 (487)
T 3oja_A 161 FAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQS------------------------- 212 (487)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGG-------------------------
T ss_pred hHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCHh-HcC-------------------------
Confidence 88776 79999999999999996633 44689999999999999986654 433
Q ss_pred CCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCC-ccCcccCCCCCC
Q 003084 624 PQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLT-GTIPLTFSNLRH 702 (850)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~ 702 (850)
+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+. +.+|..+..++.
T Consensus 213 ----------------------------l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~ 263 (487)
T 3oja_A 213 ----------------------------AAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263 (487)
T ss_dssp ----------------------------GTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHH
T ss_pred ----------------------------CCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCC
Confidence 3489999999999995 6778999999999999999998 677888888888
Q ss_pred CCEEECc
Q 003084 703 IESLDLS 709 (850)
Q Consensus 703 L~~L~Ls 709 (850)
|+.++++
T Consensus 264 L~~l~~~ 270 (487)
T 3oja_A 264 VQTVAKQ 270 (487)
T ss_dssp HHHHHHH
T ss_pred CcEEecc
Confidence 8887775
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=5.5e-27 Score=246.20 Aligned_cols=247 Identities=23% Similarity=0.291 Sum_probs=151.4
Q ss_pred CCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCC-CCCccccc-------CCCCCcEEECCCCccccCcchhc-
Q 003084 406 SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLS-GKIPRWLG-------NLKGLQHIVMPKNHLEGPIPVEF- 476 (850)
Q Consensus 406 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~- 476 (850)
..++|+.|++++|.+ .+|..+... |+.|++++|.+. ...+..+. ++++|++|++++|.+++..|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 334455555555555 333333222 455555555442 12222222 34455555555555544444433
Q ss_pred -cCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCC-----CCCcEEECcCCcCCCCcCccccC
Q 003084 477 -CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNC-----SSLVTLDLSYNYLNGSIPDWIDG 550 (850)
Q Consensus 477 -~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-----~~L~~L~L~~n~l~~~~~~~~~~ 550 (850)
..+++|++|++++|.+++. +. .+..+ ++|++|++++|++++..+..|++
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~------------------------~~-~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR------------------------DA-WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS------------------------SS-HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred HhcCCCccEEEccCCCCcch------------------------hH-HHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 4455555555555554432 21 23332 67777888877777776677777
Q ss_pred CCCCCEEECcCCcCccC--Cchhc--cCCCCCCEEeCCCCcCCccCC---CCcccCccccccCCCCCCCCCCcccccccC
Q 003084 551 LSQLSHLNLAHNNLEGE--VPIQL--CRLNQLQLLDLSDNNLHGLIP---SCFDNTTLHESYNNNSSPDKPFKTSFSISG 623 (850)
Q Consensus 551 l~~L~~L~L~~n~l~~~--~~~~l--~~l~~L~~L~Ls~n~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (850)
+++|++|++++|++.+. .+..+ ..+++|++|++++|++++... ..+
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~--------------------------- 224 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA--------------------------- 224 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH---------------------------
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH---------------------------
Confidence 88888888888876644 23333 677888888888887763210 001
Q ss_pred CCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCC-ccccCCCCCCEEECcCCcCCccCcccCCCCCC
Q 003084 624 PQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIP-PQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRH 702 (850)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 702 (850)
..+++|++|++++|++++..| ..+..+++|+.|+|++|+++ .+|..+. ++
T Consensus 225 --------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~ 275 (312)
T 1wwl_A 225 --------------------------AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AK 275 (312)
T ss_dssp --------------------------HTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SE
T ss_pred --------------------------hcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CC
Confidence 113478888888888887664 45666788888888888888 5666665 78
Q ss_pred CCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcC
Q 003084 703 IESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSG 739 (850)
Q Consensus 703 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 739 (850)
|+.||+++|++++. |. +..+++|+.|++++|++++
T Consensus 276 L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 276 LSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred ceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 88888888888865 55 7888888888888888875
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=8.3e-24 Score=239.77 Aligned_cols=268 Identities=27% Similarity=0.314 Sum_probs=187.1
Q ss_pred CCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEEC
Q 003084 360 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYL 439 (850)
Q Consensus 360 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 439 (850)
.++.|++++|.++ .+|..+. ++|++|++++|.+.. +|. .+++|++|++++|++++ +|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEEC
Confidence 4677777777777 6666543 567777777777663 332 35666666666666653 333 4556666666
Q ss_pred cCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCccccccc
Q 003084 440 NNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQL 519 (850)
Q Consensus 440 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~ 519 (850)
++|.+++. |. .+++|+.|++++|.+++. |. .+++|+.|++++|.+++ +
T Consensus 109 s~N~l~~l-~~---~l~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~------------------------l 156 (622)
T 3g06_A 109 FSNPLTHL-PA---LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLAS------------------------L 156 (622)
T ss_dssp CSCCCCCC-CC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC------------------------C
T ss_pred cCCcCCCC-CC---CCCCcCEEECCCCCCCcC-CC---CCCCCCEEECcCCcCCC------------------------c
Confidence 66666533 22 345566666666665532 22 13455555555555442 2
Q ss_pred CccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccC
Q 003084 520 KEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNT 599 (850)
Q Consensus 520 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 599 (850)
+. .+++|+.|++++|.+++ +| ..+++|+.|++++|.+++ +|. .+++|+.|++++|.++..+. .
T Consensus 157 ~~----~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~~-~---- 219 (622)
T 3g06_A 157 PA----LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLPA-L---- 219 (622)
T ss_dssp CC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCC-C----
T ss_pred CC----ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccCC-C----
Confidence 21 34678888888888885 34 456888999999998885 333 24789999999998875432 1
Q ss_pred ccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCC
Q 003084 600 TLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRI 679 (850)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 679 (850)
+++|++|++++|++++ +| ..+++|
T Consensus 220 ----------------------------------------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L 243 (622)
T 3g06_A 220 ----------------------------------------------------PSGLKELIVSGNRLTS-LP---VLPSEL 243 (622)
T ss_dssp ----------------------------------------------------CTTCCEEECCSSCCSC-CC---CCCTTC
T ss_pred ----------------------------------------------------CCCCCEEEccCCccCc-CC---CCCCcC
Confidence 1279999999999995 55 456899
Q ss_pred CEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCccccC
Q 003084 680 QTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFA 749 (850)
Q Consensus 680 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~ 749 (850)
+.|+|++|+++. +|. .+++|+.|+|++|+++ .+|..+.++++|+.|++++|++++.+|..+..+.
T Consensus 244 ~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 244 KELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred cEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 999999999994 554 6789999999999999 7799999999999999999999998877554443
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=7.4e-27 Score=245.82 Aligned_cols=261 Identities=17% Similarity=0.159 Sum_probs=211.4
Q ss_pred CCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccC
Q 003084 433 SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSK 512 (850)
Q Consensus 433 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~ 512 (850)
+++..+++.+.+.......+..+++|++|++++|.+++..+..|..+++|+.|++++|.+.+..+ ...+++|+.|++++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCS
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcC
Confidence 34555666666654444556677899999999999998888999999999999999999986654 44578999999999
Q ss_pred cccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccC
Q 003084 513 NMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLI 592 (850)
Q Consensus 513 n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 592 (850)
|.+++. ...++|+.|++++|++++..+. .+++|++|++++|++++..+..+..+++|++|++++|.+++..
T Consensus 90 n~l~~l------~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 90 NYVQEL------LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SEEEEE------EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred Cccccc------cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 998643 2348999999999999865543 4688999999999999887888889999999999999998766
Q ss_pred CCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCcc
Q 003084 593 PSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQ 672 (850)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 672 (850)
+..+.. .+++|++|++++|.+++. | .
T Consensus 161 ~~~~~~----------------------------------------------------~l~~L~~L~L~~N~l~~~-~-~ 186 (317)
T 3o53_A 161 FAELAA----------------------------------------------------SSDTLEHLNLQYNFIYDV-K-G 186 (317)
T ss_dssp GGGGGG----------------------------------------------------GTTTCCEEECTTSCCCEE-E-C
T ss_pred HHHHhh----------------------------------------------------ccCcCCEEECCCCcCccc-c-c
Confidence 554421 134899999999999865 3 3
Q ss_pred ccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCc-CCCCCCccccCCC
Q 003084 673 IGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS-GKIPEWTAQFATF 751 (850)
Q Consensus 673 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~-~~~p~~~~~~~~~ 751 (850)
...+++|++|+|++|++++.. ..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++. +.+|.++..++.+
T Consensus 187 ~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L 264 (317)
T 3o53_A 187 QVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (317)
T ss_dssp CCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHH
T ss_pred ccccccCCEEECCCCcCCcch-hhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccc
Confidence 445899999999999999654 45889999999999999999 56888999999999999999998 5666666666666
Q ss_pred CccccCCC
Q 003084 752 NKSSYDGN 759 (850)
Q Consensus 752 ~~~~~~~n 759 (850)
..+...++
T Consensus 265 ~~l~l~~~ 272 (317)
T 3o53_A 265 QTVAKQTV 272 (317)
T ss_dssp HHHHHHHH
T ss_pred eEEECCCc
Confidence 66655533
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=6.3e-26 Score=238.12 Aligned_cols=133 Identities=25% Similarity=0.309 Sum_probs=87.3
Q ss_pred ccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccC-cccccccc-------CCCCCCeeeccCCcCcccCCc
Q 003084 355 FGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLK-GHIFSRIF-------SLRNLRWLLLEGNHFVGEIPQ 426 (850)
Q Consensus 355 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~ 426 (850)
++..++|+.|++++|.+ .+|..+... |+.|++++|.+. ...+..+. ++++|++|++++|.+.+..|.
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 34456677777788777 567666542 677777777773 33444333 577788888888887777776
Q ss_pred CC--CCCCCCcEEECcCCCCCCCCcccccCC-----CCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCC
Q 003084 427 SL--SKCSSLKGLYLNNNNLSGKIPRWLGNL-----KGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS 493 (850)
Q Consensus 427 ~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~ 493 (850)
.+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|++.+..+..|..+++|++|++++|++.
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 186 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL 186 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTC
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcC
Confidence 55 6777888888888877765 5555554 56666666666666555556666666666666666543
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=1.6e-27 Score=275.64 Aligned_cols=426 Identities=17% Similarity=0.137 Sum_probs=211.3
Q ss_pred cccCCCCCCCEEEcCCCCCcc-cc-------------hhhhhccCCCCcEEeCCCCcCCCcccCCcCC-CCCcccEEecc
Q 003084 25 QELHNFTNLEYLTLDDSSLHI-SL-------------LQSIGSIFPSLKNLSMSGCEVNGVLSGQGFP-HFKSLEHLDMR 89 (850)
Q Consensus 25 ~~~~~l~~L~~L~Ls~n~i~~-~~-------------~~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~-~l~~L~~L~L~ 89 (850)
..+.++++|++|+++++.... .. ...+...+++|++|++++|.+++..+. .+. .+++|++|++
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~-~l~~~~~~L~~L~L- 137 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE-LIAKSFKNFKVLVL- 137 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH-HHHHHCTTCCEEEE-
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHH-HHHHhCCCCcEEeC-
Confidence 346678888888888864211 10 112222278888888888887655443 343 5788888888
Q ss_pred cCCc-ccccchhhHhhhcCCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCc--ccc-ccCccccCCCCCCEE
Q 003084 90 FARI-ALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNND--LRG-SLPWCLANTTSLRIL 165 (850)
Q Consensus 90 ~~~~-~~~~~~~~~l~~~l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~--l~~-~~~~~~~~l~~L~~L 165 (850)
.+| .+.+.....+...+++|++|++++|.+++.+....+.....+++|++|++++|. +.. .++..+.++++|++|
T Consensus 138 -~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L 216 (594)
T 2p1m_B 138 -SSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSL 216 (594)
T ss_dssp -ESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEE
T ss_pred -CCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEE
Confidence 666 444443344443388888888888887653322233334467788888888886 221 122223456888888
Q ss_pred ECCCC-cCcCCCCcccccCCCCCCeEECcCCcC-------cCCCCcccccCCCCccEEE-ccCCccccccccccCCCCcc
Q 003084 166 DVSFN-QLTGSISSSPLVHLTSIEELRLSNNHF-------RIPVSLEPLFNHSKLKIFD-AKNNEINGEINESHSLTPKF 236 (850)
Q Consensus 166 ~Ls~n-~i~~~i~~~~~~~l~~L~~L~L~~n~~-------~~~~~~~~l~~l~~L~~L~-l~~n~~~~~~~~~~~~~~~~ 236 (850)
++++| .+. .++. .+..+++|++|+++.+.. .+ . ...+.++++|+.+. +....
T Consensus 217 ~L~~~~~~~-~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~-l-~~~l~~~~~L~~Ls~~~~~~--------------- 277 (594)
T 2p1m_B 217 KLNRAVPLE-KLAT-LLQRAPQLEELGTGGYTAEVRPDVYSG-L-SVALSGCKELRCLSGFWDAV--------------- 277 (594)
T ss_dssp ECCTTSCHH-HHHH-HHHHCTTCSEEECSBCCCCCCHHHHHH-H-HHHHHTCTTCCEEECCBTCC---------------
T ss_pred ecCCCCcHH-HHHH-HHhcCCcceEcccccccCccchhhHHH-H-HHHHhcCCCcccccCCcccc---------------
Confidence 88887 333 4555 677788888888765532 11 0 11345566666552 21111
Q ss_pred ceeEEEccCCCCCCcccCccccCCCCccEEEccCCcccccCchhhhhcCCCCcEEEccCCcCcCc-CccCcCCCCCccEE
Q 003084 237 QLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGP-FRLPIHSHKRLRFL 315 (850)
Q Consensus 237 ~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L 315 (850)
...++..+..+++|++|++++|.+.+.....+...+++|+.|++++| +... .+.....+++|++|
T Consensus 278 -------------~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L 343 (594)
T 2p1m_B 278 -------------PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLREL 343 (594)
T ss_dssp -------------GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEE
T ss_pred -------------hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEE
Confidence 11122223334445555555544333322333334445555555444 2111 01111124445555
Q ss_pred EccC---------CcCCcCCChhhhhcCCCCcEEEccCCcCcccCccccc-CCCCCCEEEcc--C----CcCCCCcch--
Q 003084 316 DVSN---------NNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFG-NVIFLQFLDLS--N----NKLTGEIPD-- 377 (850)
Q Consensus 316 ~Ls~---------n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~--~----n~l~~~~~~-- 377 (850)
++++ +.+++.....+...+++|++|.+..+.+++..+..+. .+++|+.|+++ + +.++ ..|.
T Consensus 344 ~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~ 422 (594)
T 2p1m_B 344 RVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDI 422 (594)
T ss_dssp EEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHH
T ss_pred EEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-CCchhh
Confidence 4422 2222211122222345555555555555433333332 34555555555 2 3333 1111
Q ss_pred ---HHhhcCCCCCEEEccCCccCccccccccC-CCCCCeeeccCCcCcccCCcCC-CCCCCCcEEECcCCCCCCCCcc-c
Q 003084 378 ---HLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSL-SKCSSLKGLYLNNNNLSGKIPR-W 451 (850)
Q Consensus 378 ---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~-~ 451 (850)
.++..+++|+.|++++ .+.+..+..+.. +++|+.|++++|.+++.....+ ..+++|+.|++++|.+++.... .
T Consensus 423 ~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~ 501 (594)
T 2p1m_B 423 GFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLAN 501 (594)
T ss_dssp HHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHT
T ss_pred HHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHH
Confidence 1123455566666644 444333333333 5555666665555543322222 3455566666666655332222 2
Q ss_pred ccCCCCCcEEECCCCccccCcchhc-cCCCCCCEEecc
Q 003084 452 LGNLKGLQHIVMPKNHLEGPIPVEF-CRLDSLQILDIS 488 (850)
Q Consensus 452 ~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~ls 488 (850)
...+++|+.|++++|+++......+ ..++.|+...+.
T Consensus 502 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~ 539 (594)
T 2p1m_B 502 ASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVID 539 (594)
T ss_dssp GGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEEC
T ss_pred HHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEec
Confidence 2335555566665555533222222 234444444433
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=1.5e-23 Score=215.21 Aligned_cols=207 Identities=25% Similarity=0.280 Sum_probs=160.0
Q ss_pred CCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECc
Q 003084 481 SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLA 560 (850)
Q Consensus 481 ~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 560 (850)
..+.++++++.++. +|..+ +++++.|++++|.+.+. +...|..+++|++|++++|.++...+..|.++++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~-~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNI-PADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCC-CTTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCC-CCCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 57789999998874 44322 36788888888888644 33378888888888888888887666677888888888888
Q ss_pred CCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhcc
Q 003084 561 HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTT 640 (850)
Q Consensus 561 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (850)
+|++.+..+..+..+++|++|++++|.+++..+..|...+
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---------------------------------------- 133 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT---------------------------------------- 133 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT----------------------------------------
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc----------------------------------------
Confidence 8888877677778888888888888888777766665533
Q ss_pred ccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChh
Q 003084 641 KNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQ 720 (850)
Q Consensus 641 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 720 (850)
+|++|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++++..+..
T Consensus 134 -------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 200 (270)
T 2o6q_A 134 -------------KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA 200 (270)
T ss_dssp -------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred -------------CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHH
Confidence 7888888888888666666788888888888888888777777888888888888888888766667
Q ss_pred hhcCCCCCEEEccCCcCcCCCCC
Q 003084 721 LVDLNTLAIFIVAYNNLSGKIPE 743 (850)
Q Consensus 721 l~~l~~L~~L~l~~N~l~~~~p~ 743 (850)
+..+++|+.|++++|++.|.++.
T Consensus 201 ~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 201 FDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp TTTCTTCCEEECCSSCBCCSSSS
T ss_pred hccccCCCEEEecCCCeeCCCcc
Confidence 77888888888888888776653
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=1.2e-27 Score=276.60 Aligned_cols=207 Identities=18% Similarity=0.145 Sum_probs=121.3
Q ss_pred hhcCCCCcEEEccCCcCcCcCccCcC-CCCCccEEEccCC-cCCcCCChhhhhcCCCCcEEEccCCcCcccCcccc----
Q 003084 282 LENNTKLEFLYLVNDSLAGPFRLPIH-SHKRLRFLDVSNN-NFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSF---- 355 (850)
Q Consensus 282 ~~~~~~L~~L~L~~~~~~~~~~~~~~-~~~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---- 355 (850)
...+++|++|++++|.+.+.....+. .+++|++|++++| .++......+...+++|++|++++|.+++..+..+
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 34667777777777776654444443 4677778888777 44322222334447788888888877665444333
Q ss_pred cCCCCCCEEEccCCc--CCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCc-------CcccCCc
Q 003084 356 GNVIFLQFLDLSNNK--LTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNH-------FVGEIPQ 426 (850)
Q Consensus 356 ~~l~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~~~ 426 (850)
..+++|++|++++|. +.......+...+++|++|++++|.-.+.++..+..+++|++|+++.+. +.+ ++.
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~ 259 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSV 259 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHH
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHH
Confidence 356678888888776 2211112223346788888888773222356666777788888765543 221 223
Q ss_pred CCCCCCCCcEE-ECcCCCCCCCCcccccCCCCCcEEECCCCccccCcc-hhccCCCCCCEEeccCC
Q 003084 427 SLSKCSSLKGL-YLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIP-VEFCRLDSLQILDISDN 490 (850)
Q Consensus 427 ~~~~l~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~ls~n 490 (850)
.+.++++|+.| .+.+... +.++..+..+++|++|++++|.+++... ..+..+++|+.|++++|
T Consensus 260 ~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred HHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 45667777777 3333221 1333344456777777777777553322 22456777777777766
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=7.1e-24 Score=218.63 Aligned_cols=190 Identities=25% Similarity=0.297 Sum_probs=109.9
Q ss_pred ccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccc
Q 003084 523 TFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLH 602 (850)
Q Consensus 523 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 602 (850)
.|..+++|++|++++|.+++..+..|.++++|++|++++|++++..+..+.++++|++|++++|.+.+..+..+....
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-- 124 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK-- 124 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCT--
T ss_pred HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCC--
Confidence 455566666666666666555555566666666666666666655555566666666666666666554443333322
Q ss_pred cccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccC-CCccccCCCCCCE
Q 003084 603 ESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGH-IPPQIGNLTRIQT 681 (850)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~ 681 (850)
+|++|++++|.+++. +|..|.++++|++
T Consensus 125 ---------------------------------------------------~L~~L~l~~n~l~~~~l~~~~~~l~~L~~ 153 (276)
T 2z62_A 125 ---------------------------------------------------TLKELNVAHNLIQSFKLPEYFSNLTNLEH 153 (276)
T ss_dssp ---------------------------------------------------TCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred ---------------------------------------------------CCCEEECcCCccceecCchhhccCCCCCE
Confidence 566666666666543 3556666666666
Q ss_pred EECcCCcCCccCcccCCCCCCCC----EEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCccccCCCCccccC
Q 003084 682 LNLSHNNLTGTIPLTFSNLRHIE----SLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYD 757 (850)
Q Consensus 682 L~Ls~N~l~~~~~~~~~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~ 757 (850)
|++++|++++..+..+..+++|+ .|++++|++++..+..+.. .+|+.|++++|.+++..+..+..+..+..+.++
T Consensus 154 L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 232 (276)
T ss_dssp EECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECC
T ss_pred EECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEcc
Confidence 66666666655555555554444 5666666666444443332 356666666666665555444555566666666
Q ss_pred CCCCCCCCC
Q 003084 758 GNPFLCGLP 766 (850)
Q Consensus 758 ~n~~~c~~~ 766 (850)
+||+.|+|+
T Consensus 233 ~N~~~c~c~ 241 (276)
T 2z62_A 233 TNPWDCSCP 241 (276)
T ss_dssp SSCBCCCTT
T ss_pred CCcccccCC
Confidence 666666665
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=8e-24 Score=218.24 Aligned_cols=209 Identities=25% Similarity=0.307 Sum_probs=127.9
Q ss_pred CCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECc
Q 003084 457 GLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 536 (850)
Q Consensus 457 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~ 536 (850)
++++|++++|.+++..+..|.++++|++|++++|.+.+. +...|..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------------~~~~~~~l~~L~~L~L~ 84 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI------------------------EDGAYQSLSHLSTLILT 84 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE------------------------CTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc------------------------CHHHccCCcCCCEEECC
Confidence 445555555555444444455555555555555544321 11144455555555555
Q ss_pred CCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCcc-CCCCcccCccccccCCCCCCCCCC
Q 003084 537 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL-IPSCFDNTTLHESYNNNSSPDKPF 615 (850)
Q Consensus 537 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 615 (850)
+|.+++..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+++. .|..+..+
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l---------------- 148 (276)
T 2z62_A 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL---------------- 148 (276)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC----------------
T ss_pred CCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccC----------------
Confidence 5555544445555555566666655555544444555566666666666665543 23333332
Q ss_pred cccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCC----EEECcCCcCCc
Q 003084 616 KTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQ----TLNLSHNNLTG 691 (850)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~----~L~Ls~N~l~~ 691 (850)
++|++|++++|++++..+..|..+++|+ .|++++|.+++
T Consensus 149 -------------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~ 191 (276)
T 2z62_A 149 -------------------------------------TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191 (276)
T ss_dssp -------------------------------------TTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCE
T ss_pred -------------------------------------CCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccc
Confidence 2566666666666655555666555665 78888888886
Q ss_pred cCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCC
Q 003084 692 TIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 743 (850)
Q Consensus 692 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~ 743 (850)
..+..+.. .+|+.|++++|++++..+..+..+++|+.|++++|+++|.+|.
T Consensus 192 ~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 192 IQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp ECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred cCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 66555544 4788899999988877677778899999999999999988874
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=7e-23 Score=210.12 Aligned_cols=206 Identities=24% Similarity=0.249 Sum_probs=174.0
Q ss_pred cccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeC
Q 003084 504 SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL 583 (850)
Q Consensus 504 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 583 (850)
..+.++++++.++. +|. .+ .++++.|++++|++++..+..|.++++|++|++++|.+++..+..|..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~~-ip~-~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPS-NI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSS-CCS-CC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCc-cCC-CC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 56789999888863 554 22 267899999999998777778889999999999999998777777788999999999
Q ss_pred CCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCC
Q 003084 584 SDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCN 663 (850)
Q Consensus 584 s~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n 663 (850)
++|++++..+..|.... +|++|++++|
T Consensus 93 ~~n~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~l~~n 119 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLV-----------------------------------------------------NLAELRLDRN 119 (270)
T ss_dssp CSSCCCCCCTTTTTTCS-----------------------------------------------------SCCEEECCSS
T ss_pred CCCcCCcCCHhHccccc-----------------------------------------------------CCCEEECCCC
Confidence 99998877776665543 7999999999
Q ss_pred ccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCC
Q 003084 664 KLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 743 (850)
Q Consensus 664 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~ 743 (850)
++++..+..|..+++|++|+|++|.+++..+..|+.+++|+.|++++|++++..+..|..+++|+.|++++|++++..+.
T Consensus 120 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 199 (270)
T 2o6q_A 120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG 199 (270)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHH
Confidence 99988888888999999999999999977777788999999999999999987777888899999999999999877776
Q ss_pred CccccCCCCccccCCCCCCCCCC
Q 003084 744 WTAQFATFNKSSYDGNPFLCGLP 766 (850)
Q Consensus 744 ~~~~~~~~~~~~~~~n~~~c~~~ 766 (850)
.+..+..+..+.+.+|||.|+|+
T Consensus 200 ~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 200 AFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTCTTCCEEECCSSCBCCSSS
T ss_pred HhccccCCCEEEecCCCeeCCCc
Confidence 67778888888999999999886
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=7e-23 Score=211.66 Aligned_cols=206 Identities=25% Similarity=0.287 Sum_probs=123.1
Q ss_pred ccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCC
Q 003084 476 FCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLS 555 (850)
Q Consensus 476 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 555 (850)
+.+++++++++++++.++.. |..+ ++.++.|++++|.+++..+. .|..+++|+.|++++|.+++..+ ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~i-p~~~-~~~l~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTAL-PPDL-PKDTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSC-CSCC-CTTCCEEECTTSCCSEEEGG-GGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCCcC-CCCC-CCCCCEEEcCCCcCCccCHH-HhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 56778888899988888743 3222 24666666666666543333 56666666666666666654322 25566666
Q ss_pred EEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhh
Q 003084 556 HLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEI 635 (850)
Q Consensus 556 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (850)
+|++++|++. .+|..+..+++|++|++++|++++.++..|..++
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~----------------------------------- 124 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG----------------------------------- 124 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT-----------------------------------
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCC-----------------------------------
Confidence 6666666665 4455555666666666666666655555554433
Q ss_pred hhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcc
Q 003084 636 FEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG 715 (850)
Q Consensus 636 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 715 (850)
+|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++
T Consensus 125 ------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~- 185 (290)
T 1p9a_G 125 ------------------ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY- 185 (290)
T ss_dssp ------------------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred ------------------CCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-
Confidence 5666666666666555555556666666666666666554455555666666666666665
Q ss_pred cCChhhhcCCCCCEEEccCCcCcCCC
Q 003084 716 KIPRQLVDLNTLAIFIVAYNNLSGKI 741 (850)
Q Consensus 716 ~~p~~l~~l~~L~~L~l~~N~l~~~~ 741 (850)
.+|..+..+++|+.+++++|++.|.+
T Consensus 186 ~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 186 TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred ccChhhcccccCCeEEeCCCCccCcC
Confidence 45555555556666666666655443
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=2e-22 Score=208.21 Aligned_cols=205 Identities=27% Similarity=0.270 Sum_probs=153.6
Q ss_pred CCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEE
Q 003084 502 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLL 581 (850)
Q Consensus 502 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 581 (850)
.++++.++++++.++ .+|. .+ .++++.|++++|.+++..+..|.++++|+.|++++|.+++..+. ..+++|++|
T Consensus 9 l~~l~~l~~~~~~l~-~ip~-~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L 82 (290)
T 1p9a_G 9 VASHLEVNCDKRNLT-ALPP-DL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL 82 (290)
T ss_dssp STTCCEEECTTSCCS-SCCS-CC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred cCCccEEECCCCCCC-cCCC-CC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence 457788888888875 3444 22 26788888888888877777788888888888888888754332 677888888
Q ss_pred eCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEcc
Q 003084 582 DLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLS 661 (850)
Q Consensus 582 ~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls 661 (850)
++++|+++.. |..+.. +++|++|+++
T Consensus 83 ~Ls~N~l~~l-~~~~~~-----------------------------------------------------l~~L~~L~l~ 108 (290)
T 1p9a_G 83 DLSHNQLQSL-PLLGQT-----------------------------------------------------LPALTVLDVS 108 (290)
T ss_dssp ECCSSCCSSC-CCCTTT-----------------------------------------------------CTTCCEEECC
T ss_pred ECCCCcCCcC-chhhcc-----------------------------------------------------CCCCCEEECC
Confidence 8888887643 333332 2378888888
Q ss_pred CCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCC
Q 003084 662 CNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKI 741 (850)
Q Consensus 662 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~ 741 (850)
+|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|+++ .+
T Consensus 109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~i 187 (290)
T 1p9a_G 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI 187 (290)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred CCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-cc
Confidence 88888777777888888888888888888777777788888888888888888666666778888888888888887 45
Q ss_pred CCCccccCCCCccccCCCCCCCCCCC
Q 003084 742 PEWTAQFATFNKSSYDGNPFLCGLPL 767 (850)
Q Consensus 742 p~~~~~~~~~~~~~~~~n~~~c~~~l 767 (850)
|.++.....+..+.+.+|||.|+|.+
T Consensus 188 p~~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 188 PKGFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp CTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred ChhhcccccCCeEEeCCCCccCcCcc
Confidence 55555666777778888888888764
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=8.3e-23 Score=209.68 Aligned_cols=224 Identities=21% Similarity=0.247 Sum_probs=171.3
Q ss_pred cEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcc
Q 003084 435 KGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNM 514 (850)
Q Consensus 435 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~ 514 (850)
..+++..+.+.+. .....+++|+.|++++|.+... ..+..+++|+.|++++|.+.+
T Consensus 22 ~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-------------------- 77 (272)
T 3rfs_A 22 IKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-------------------- 77 (272)
T ss_dssp HHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC--------------------
T ss_pred HHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC--------------------
Confidence 3344444444322 2344556666666666666532 235556666666666665542
Q ss_pred cccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCC
Q 003084 515 LHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPS 594 (850)
Q Consensus 515 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 594 (850)
++ .+..+++|++|++++|.+++..+..|.++++|++|++++|++++..+..+..+++|++|++++|.+++..+.
T Consensus 78 ----~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 151 (272)
T 3rfs_A 78 ----IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG 151 (272)
T ss_dssp ----CG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ----ch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHH
Confidence 11 577888999999999999888777888899999999999999877777788899999999999998877776
Q ss_pred CcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCcccc
Q 003084 595 CFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIG 674 (850)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 674 (850)
.|..++ +|++|++++|++++..+..|.
T Consensus 152 ~~~~l~-----------------------------------------------------~L~~L~l~~n~l~~~~~~~~~ 178 (272)
T 3rfs_A 152 VFDKLT-----------------------------------------------------NLTELDLSYNQLQSLPEGVFD 178 (272)
T ss_dssp TTTTCT-----------------------------------------------------TCCEEECCSSCCCCCCTTTTT
T ss_pred HhccCc-----------------------------------------------------cCCEEECCCCCcCccCHHHhc
Confidence 665543 799999999999987777788
Q ss_pred CCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCcccc
Q 003084 675 NLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQF 748 (850)
Q Consensus 675 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~ 748 (850)
.+++|+.|++++|++++..|..|+.+++|+.|++++|++.+. ++.|+.++++.|.++|.+|.+++.+
T Consensus 179 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 179 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred CCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence 999999999999999988888889999999999999988743 4578888999999999998865433
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=1.9e-21 Score=196.98 Aligned_cols=162 Identities=27% Similarity=0.274 Sum_probs=142.7
Q ss_pred CCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCC
Q 003084 528 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNN 607 (850)
Q Consensus 528 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~ 607 (850)
++++.|++++|.+++..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|++++..+..|....
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------- 107 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLT------- 107 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-------
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccC-------
Confidence 5788899999999888888888899999999999999888888888899999999999999887777666543
Q ss_pred CCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCC
Q 003084 608 NSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHN 687 (850)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 687 (850)
+|++|+|++|++++..+..|..+++|+.|+|++|
T Consensus 108 ----------------------------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 141 (251)
T 3m19_A 108 ----------------------------------------------QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141 (251)
T ss_dssp ----------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ----------------------------------------------CCCEEEcCCCcCCCcChhHhccCCcccEEECcCC
Confidence 8999999999999777777899999999999999
Q ss_pred cCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCC
Q 003084 688 NLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP 742 (850)
Q Consensus 688 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p 742 (850)
++++..+..|+.+++|+.|+|++|++++..|..+..+++|+.|++++|+++|...
T Consensus 142 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 196 (251)
T 3m19_A 142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC 196 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTST
T ss_pred cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCcc
Confidence 9998877789999999999999999998888889999999999999999998744
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=7.1e-22 Score=202.70 Aligned_cols=203 Identities=22% Similarity=0.216 Sum_probs=168.3
Q ss_pred CCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcC
Q 003084 482 LQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAH 561 (850)
Q Consensus 482 L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 561 (850)
+..+++.++.+... .......+|+.|++++|.+.. ++ .+..+++|+.|++++|.+++. ..+..+++|++|++++
T Consensus 21 l~~l~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~-~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 21 TIKANLKKKSVTDA-VTQNELNSIDQIIANNSDIKS-VQ--GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHTCSCTTSE-ECHHHHTTCCEEECTTSCCCC-CT--TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTT
T ss_pred HHHHHhcCcccccc-cccccccceeeeeeCCCCccc-cc--ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCC
Confidence 34455666655432 122336789999999998853 22 577889999999999999864 4788999999999999
Q ss_pred CcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccc
Q 003084 562 NNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTK 641 (850)
Q Consensus 562 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (850)
|.+++..+..+..+++|++|++++|++++..+..|..+.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~----------------------------------------- 133 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT----------------------------------------- 133 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-----------------------------------------
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCC-----------------------------------------
Confidence 999988887888999999999999999888777666544
Q ss_pred cchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhh
Q 003084 642 NIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQL 721 (850)
Q Consensus 642 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 721 (850)
+|++|++++|++++..+..|..+++|+.|++++|++++..+..|+.+++|+.|++++|++++..|..+
T Consensus 134 ------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 201 (272)
T 3rfs_A 134 ------------NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF 201 (272)
T ss_dssp ------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred ------------CCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHH
Confidence 89999999999998777778899999999999999998888888999999999999999998888888
Q ss_pred hcCCCCCEEEccCCcCcCCCCC
Q 003084 722 VDLNTLAIFIVAYNNLSGKIPE 743 (850)
Q Consensus 722 ~~l~~L~~L~l~~N~l~~~~p~ 743 (850)
..+++|+.|++++|++.|.+|.
T Consensus 202 ~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 202 DRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp TTCTTCCEEECCSSCBCCCTTT
T ss_pred hCCcCCCEEEccCCCccccCcH
Confidence 9999999999999999988875
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=4.8e-21 Score=194.03 Aligned_cols=183 Identities=23% Similarity=0.281 Sum_probs=165.3
Q ss_pred CCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCC
Q 003084 528 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNN 607 (850)
Q Consensus 528 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~ 607 (850)
.+.+.++++++.++. +|..+. ++++.|++++|.+.+..+..+.++++|++|++++|.+++..+..|....
T Consensus 14 ~~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------- 83 (251)
T 3m19_A 14 EGKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT------- 83 (251)
T ss_dssp GGGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-------
T ss_pred CCCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC-------
Confidence 356789999999984 455443 6899999999999988888999999999999999999998887776644
Q ss_pred CCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCC
Q 003084 608 NSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHN 687 (850)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 687 (850)
+|++|++++|++++..+..|..+++|++|+|++|
T Consensus 84 ----------------------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 117 (251)
T 3m19_A 84 ----------------------------------------------ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117 (251)
T ss_dssp ----------------------------------------------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ----------------------------------------------cCCEEECCCCcccccChhHhcccCCCCEEEcCCC
Confidence 8999999999999888888999999999999999
Q ss_pred cCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCccccCCCCccccCCCCCCCC-CC
Q 003084 688 NLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCG-LP 766 (850)
Q Consensus 688 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~-~~ 766 (850)
++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++++..+..+..+..+..+.+.+|++.|. |.
T Consensus 118 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 197 (251)
T 3m19_A 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCE 197 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTT
T ss_pred cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccc
Confidence 99988888899999999999999999988788899999999999999999988887788899999999999999998 54
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=7.3e-23 Score=219.69 Aligned_cols=67 Identities=19% Similarity=0.183 Sum_probs=41.3
Q ss_pred cCCeEEccCCccccCCC----ccccCCCCCCEEECcCCcCCccC-------cccCCCCCCCCEEECcCCcCcccCChh
Q 003084 654 LLAGLDLSCNKLVGHIP----PQIGNLTRIQTLNLSHNNLTGTI-------PLTFSNLRHIESLDLSYNKLSGKIPRQ 720 (850)
Q Consensus 654 ~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~~-------~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 720 (850)
+|++|||++|.+++..+ ..+..+++|+.|+|++|.+.+.. +..+..+++|+.||+++|++....+..
T Consensus 226 ~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~ 303 (362)
T 3goz_A 226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP 303 (362)
T ss_dssp TCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHH
T ss_pred CceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHH
Confidence 56677777776665433 22455667777777777744332 235666777777777777776554433
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=3.3e-21 Score=193.86 Aligned_cols=78 Identities=21% Similarity=0.204 Sum_probs=36.1
Q ss_pred cCC-eEEccCCccccCCCccccCCCCCCEEECcCCc-CCccCcccCCCC-CCCCEEECcCCcCcccCChhhhcCCCCCEE
Q 003084 654 LLA-GLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNN-LTGTIPLTFSNL-RHIESLDLSYNKLSGKIPRQLVDLNTLAIF 730 (850)
Q Consensus 654 ~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 730 (850)
+|+ +|++++|+++...+..|.. ++|+.|++++|+ +++..+..|..+ ++|+.|++++|++++. |.. .+++|+.|
T Consensus 156 ~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L 231 (239)
T 2xwt_C 156 NETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKEL 231 (239)
T ss_dssp SSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEE
T ss_pred cceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCcee
Confidence 444 4555555444222222333 455555555552 554444445555 5555555555555532 222 34445555
Q ss_pred EccCC
Q 003084 731 IVAYN 735 (850)
Q Consensus 731 ~l~~N 735 (850)
+++++
T Consensus 232 ~l~~~ 236 (239)
T 2xwt_C 232 IARNT 236 (239)
T ss_dssp ECTTC
T ss_pred eccCc
Confidence 55443
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=1.4e-22 Score=217.53 Aligned_cols=261 Identities=19% Similarity=0.182 Sum_probs=176.4
Q ss_pred eeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCc----ccccCCC-CCcEEECCCCccccCcchhccCC-----CCC
Q 003084 413 LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIP----RWLGNLK-GLQHIVMPKNHLEGPIPVEFCRL-----DSL 482 (850)
Q Consensus 413 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~~L 482 (850)
+.++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4566666666666555555557777777777665555 5555666 67777777776666555555443 666
Q ss_pred CEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCC-CCCcEEECcCCcCCCCcCccc----cC-CCCCCE
Q 003084 483 QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNC-SSLVTLDLSYNYLNGSIPDWI----DG-LSQLSH 556 (850)
Q Consensus 483 ~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~----~~-l~~L~~ 556 (850)
++|++++|.+.+..+.. +. ..+..+ ++|++|++++|.+++..+..+ .. .++|++
T Consensus 83 ~~L~Ls~n~l~~~~~~~-------------------l~-~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 142 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDE-------------------LV-KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS 142 (362)
T ss_dssp CEEECCSSCGGGSCHHH-------------------HH-HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCE
T ss_pred cEEECcCCcCChHHHHH-------------------HH-HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeE
Confidence 66666666655322110 00 124444 789999999999886655443 33 368999
Q ss_pred EECcCCcCccCCch----hccCCC-CCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhh
Q 003084 557 LNLAHNNLEGEVPI----QLCRLN-QLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKK 631 (850)
Q Consensus 557 L~L~~n~l~~~~~~----~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (850)
|++++|.+++..+. .+..++ +|++|++++|++++..+..+...-
T Consensus 143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l------------------------------- 191 (362)
T 3goz_A 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL------------------------------- 191 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH-------------------------------
T ss_pred EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHH-------------------------------
Confidence 99999998854433 345555 899999999988765543332110
Q ss_pred hhhhhhhccccchhcchhhhh-ccCCeEEccCCccccC----CCccccC-CCCCCEEECcCCcCCccCc----ccCCCCC
Q 003084 632 ILEIFEFTTKNIAYAYQGRVL-SLLAGLDLSCNKLVGH----IPPQIGN-LTRIQTLNLSHNNLTGTIP----LTFSNLR 701 (850)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~----~p~~~~~-l~~L~~L~Ls~N~l~~~~~----~~~~~l~ 701 (850)
... ++|++|||++|.+++. ++..+.. .++|++|+|++|.+++..+ ..+..++
T Consensus 192 ------------------~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~ 253 (362)
T 3goz_A 192 ------------------ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLK 253 (362)
T ss_dssp ------------------HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTT
T ss_pred ------------------HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCC
Confidence 001 3799999999999863 3445555 4599999999999997655 4567789
Q ss_pred CCCEEECcCCcCcccC-------ChhhhcCCCCCEEEccCCcCcCCCC
Q 003084 702 HIESLDLSYNKLSGKI-------PRQLVDLNTLAIFIVAYNNLSGKIP 742 (850)
Q Consensus 702 ~L~~L~Ls~N~l~~~~-------p~~l~~l~~L~~L~l~~N~l~~~~p 742 (850)
+|+.|++++|.+.+.. +..+..+++|+.||+++|++....+
T Consensus 254 ~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 254 HLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp TCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred CccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 9999999999955433 3466788999999999999986533
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=3.2e-21 Score=202.12 Aligned_cols=232 Identities=18% Similarity=0.212 Sum_probs=154.7
Q ss_pred CCcEEECcCCCCCCCCcc---cccCCCCCcEEECCCCccccCcchhc--cCCCCCCEEeccCCcCCCCCCCCcCCCcccE
Q 003084 433 SLKGLYLNNNNLSGKIPR---WLGNLKGLQHIVMPKNHLEGPIPVEF--CRLDSLQILDISDNNISGSLPSCFYPLSIKQ 507 (850)
Q Consensus 433 ~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~ 507 (850)
.++.+.+.++.+...... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+.
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~--------- 135 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSW--------- 135 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS---------
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhh---------
Confidence 456666666554321000 01123445666666665555555554 5555555555555555432110
Q ss_pred EEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccC--C--chhccCCCCCCEEeC
Q 003084 508 VHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGE--V--PIQLCRLNQLQLLDL 583 (850)
Q Consensus 508 L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~--~~~l~~l~~L~~L~L 583 (850)
++...+..+++|++|++++|++.+..+..++++++|++|++++|++.+. . +..+..+++|++|++
T Consensus 136 -----------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L 204 (310)
T 4glp_A 136 -----------LAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLAL 204 (310)
T ss_dssp -----------HHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBC
T ss_pred -----------hHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEEC
Confidence 1112445788899999999999888888888899999999999987642 1 222467888999999
Q ss_pred CCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCC
Q 003084 584 SDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCN 663 (850)
Q Consensus 584 s~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n 663 (850)
++|+++...+.... ....+++|++|||++|
T Consensus 205 s~N~l~~l~~~~~~--------------------------------------------------l~~~l~~L~~L~Ls~N 234 (310)
T 4glp_A 205 RNTGMETPTGVCAA--------------------------------------------------LAAAGVQPHSLDLSHN 234 (310)
T ss_dssp CSSCCCCHHHHHHH--------------------------------------------------HHHHTCCCSSEECTTS
T ss_pred CCCCCCchHHHHHH--------------------------------------------------HHhcCCCCCEEECCCC
Confidence 99987532211000 0012458999999999
Q ss_pred ccccCCCccccCC---CCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcC
Q 003084 664 KLVGHIPPQIGNL---TRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSG 739 (850)
Q Consensus 664 ~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 739 (850)
++++..|..+..+ ++|++|+|++|+++ .+|..+. ++|+.|||++|++++. |. +..+++|+.|++++|+++.
T Consensus 235 ~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 235 SLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 9988778777776 69999999999998 5676664 7899999999999854 43 6788999999999998864
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=6.8e-21 Score=191.53 Aligned_cols=198 Identities=17% Similarity=0.190 Sum_probs=161.7
Q ss_pred CCcccEEEccCcccccccCccccCCCCCCcEEECcCCc-CCCCcCccccCCCCCCEEECcC-CcCccCCchhccCCCCCC
Q 003084 502 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY-LNGSIPDWIDGLSQLSHLNLAH-NNLEGEVPIQLCRLNQLQ 579 (850)
Q Consensus 502 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~ 579 (850)
+.+++.|++++|.+++ ++...|.++++|+.|++++|+ ++.+.+..|.++++|++|++++ |++++..+..|.++++|+
T Consensus 30 ~~~l~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRT-IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CTTCCEEEEESCCCSE-ECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCcccEEEEeCCcceE-ECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 3356666666666654 344478899999999999997 8877777899999999999998 999988788899999999
Q ss_pred EEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCC---
Q 003084 580 LLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLA--- 656 (850)
Q Consensus 580 ~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~--- 656 (850)
+|++++|++++.+ . |.... +|+
T Consensus 109 ~L~l~~n~l~~lp-~-~~~l~-----------------------------------------------------~L~~L~ 133 (239)
T 2xwt_C 109 FLGIFNTGLKMFP-D-LTKVY-----------------------------------------------------STDIFF 133 (239)
T ss_dssp EEEEEEECCCSCC-C-CTTCC-----------------------------------------------------BCCSEE
T ss_pred EEeCCCCCCcccc-c-ccccc-----------------------------------------------------cccccc
Confidence 9999999998743 3 44433 566
Q ss_pred eEEccCC-ccccCCCccccCCCCCC-EEECcCCcCCccCcccCCCCCCCCEEECcCCc-CcccCChhhhcC-CCCCEEEc
Q 003084 657 GLDLSCN-KLVGHIPPQIGNLTRIQ-TLNLSHNNLTGTIPLTFSNLRHIESLDLSYNK-LSGKIPRQLVDL-NTLAIFIV 732 (850)
Q Consensus 657 ~L~Ls~n-~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~l 732 (850)
+|++++| ++++..+..|.++++|+ .|++++|+++...+..|.. ++|+.|++++|+ +++..+..|..+ ++|+.|++
T Consensus 134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l 212 (239)
T 2xwt_C 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV 212 (239)
T ss_dssp EEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEEC
T ss_pred EEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEEC
Confidence 9999999 99988778899999999 9999999999655556665 899999999995 998878899999 99999999
Q ss_pred cCCcCcCCCCCCccccCCCCccccCCC
Q 003084 733 AYNNLSGKIPEWTAQFATFNKSSYDGN 759 (850)
Q Consensus 733 ~~N~l~~~~p~~~~~~~~~~~~~~~~n 759 (850)
++|++++..+. .+..+..+.+.++
T Consensus 213 ~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 213 SQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCccccCChh---HhccCceeeccCc
Confidence 99999964444 4556666665554
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=8.7e-23 Score=221.56 Aligned_cols=247 Identities=18% Similarity=0.206 Sum_probs=177.3
Q ss_pred cCCcCCCCCCCCcEEECcCCCCCCCCc----ccccCCCCCcEEECCCCcc---ccCcchhc-------cCCCCCCEEecc
Q 003084 423 EIPQSLSKCSSLKGLYLNNNNLSGKIP----RWLGNLKGLQHIVMPKNHL---EGPIPVEF-------CRLDSLQILDIS 488 (850)
Q Consensus 423 ~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l---~~~~~~~~-------~~l~~L~~L~ls 488 (850)
.++..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+ .+.+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 344556667788888888888765433 2356778888888877543 33334333 567777777777
Q ss_pred CCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccc----cCC---------CCCC
Q 003084 489 DNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI----DGL---------SQLS 555 (850)
Q Consensus 489 ~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~----~~l---------~~L~ 555 (850)
+|.+.+... ..++. .+..+++|+.|+|++|.++...+..+ ..+ ++|+
T Consensus 103 ~n~l~~~~~-------------------~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~ 162 (386)
T 2ca6_A 103 DNAFGPTAQ-------------------EPLID-FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR 162 (386)
T ss_dssp SCCCCTTTH-------------------HHHHH-HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCcCCHHHH-------------------HHHHH-HHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCc
Confidence 777653100 01222 56678888888888888864433333 333 8999
Q ss_pred EEECcCCcCc-cCCc---hhccCCCCCCEEeCCCCcCCcc-----CCCCcccCccccccCCCCCCCCCCcccccccCCCC
Q 003084 556 HLNLAHNNLE-GEVP---IQLCRLNQLQLLDLSDNNLHGL-----IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQG 626 (850)
Q Consensus 556 ~L~L~~n~l~-~~~~---~~l~~l~~L~~L~Ls~n~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (850)
+|++++|+++ +..+ ..+..+++|++|++++|.++.. .+..+..
T Consensus 163 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~---------------------------- 214 (386)
T 2ca6_A 163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY---------------------------- 214 (386)
T ss_dssp EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG----------------------------
T ss_pred EEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc----------------------------
Confidence 9999999887 3333 4567788999999999987621 1112222
Q ss_pred chhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccc----cCCCccccCCCCCCEEECcCCcCCcc----CcccC-
Q 003084 627 SVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLV----GHIPPQIGNLTRIQTLNLSHNNLTGT----IPLTF- 697 (850)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~~~~~- 697 (850)
+++|++|+|++|.++ ..+|..+..+++|+.|+|++|.+++. +|..+
T Consensus 215 -------------------------~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 269 (386)
T 2ca6_A 215 -------------------------CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269 (386)
T ss_dssp -------------------------CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred -------------------------CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence 348999999999985 56778889999999999999999865 56666
Q ss_pred -CCCCCCCEEECcCCcCcc----cCChhh-hcCCCCCEEEccCCcCcCCCC
Q 003084 698 -SNLRHIESLDLSYNKLSG----KIPRQL-VDLNTLAIFIVAYNNLSGKIP 742 (850)
Q Consensus 698 -~~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~l~~N~l~~~~p 742 (850)
+.+++|+.|+|++|++++ .+|..+ .++++|+.|++++|++++..|
T Consensus 270 ~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 348999999999999997 478777 668999999999999997764
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=7.5e-21 Score=199.33 Aligned_cols=56 Identities=29% Similarity=0.454 Sum_probs=34.8
Q ss_pred cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCc
Q 003084 654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 714 (850)
Q Consensus 654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 714 (850)
+|++|+|++|+++ .+|..+. ++|+.|+|++|++++. |. +..+++|+.|++++|+++
T Consensus 252 ~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 252 ALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred cCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 5666666666666 4454443 5677777777777643 22 556667777777777665
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=3.2e-20 Score=193.85 Aligned_cols=196 Identities=23% Similarity=0.367 Sum_probs=139.4
Q ss_pred ccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCc
Q 003084 452 LGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLV 531 (850)
Q Consensus 452 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 531 (850)
...+++|++|++++|.+... + .+..+++|+.|++++|.+.+. + .+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~------------------------~--~~~~l~~L~ 88 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDL------------------------A--PLKNLTKIT 88 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC------------------------G--GGTTCCSCC
T ss_pred HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCC------------------------h--hHccCCCCC
Confidence 34566777777777777643 2 466677777777777766532 1 266777788
Q ss_pred EEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCC
Q 003084 532 TLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSP 611 (850)
Q Consensus 532 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~ 611 (850)
.|++++|++++. ..+..+++|+.|++++|++++. + .+..+++|++|++++|.+++..+ +..
T Consensus 89 ~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~------------- 149 (308)
T 1h6u_A 89 ELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAG------------- 149 (308)
T ss_dssp EEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGG-------------
T ss_pred EEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccC-------------
Confidence 888888887754 3577788888888888887753 2 37778888888888887765443 222
Q ss_pred CCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCc
Q 003084 612 DKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTG 691 (850)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 691 (850)
+++|++|++++|++++..+ +..+++|+.|++++|++++
T Consensus 150 ----------------------------------------l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 150 ----------------------------------------LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp ----------------------------------------CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred ----------------------------------------CCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc
Confidence 3378888888888875433 7788888888888888875
Q ss_pred cCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCC
Q 003084 692 TIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGK 740 (850)
Q Consensus 692 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 740 (850)
..+ +..+++|+.|++++|++++..| +..+++|+.|++++|++++.
T Consensus 188 ~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 188 ISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp CGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred Chh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence 543 7778888888888888875543 77888888888888888753
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=9.3e-22 Score=209.47 Aligned_cols=233 Identities=18% Similarity=0.188 Sum_probs=134.3
Q ss_pred CCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccC-cchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEc
Q 003084 432 SSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGP-IPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHL 510 (850)
Q Consensus 432 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l 510 (850)
++++.|++++|.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~---------------- 132 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD---------------- 132 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH----------------
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCH----------------
Confidence 3444444444444433322 23345555555555554433 34444555555555555554431
Q ss_pred cCcccccccCccccCCCCCCcEEECcCC-cCCCC-cCccccCCCCCCEEECcCC-cCccC-CchhccCCC-CCCEEeCCC
Q 003084 511 SKNMLHGQLKEGTFFNCSSLVTLDLSYN-YLNGS-IPDWIDGLSQLSHLNLAHN-NLEGE-VPIQLCRLN-QLQLLDLSD 585 (850)
Q Consensus 511 ~~n~~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~-~L~~L~Ls~ 585 (850)
..+. .+..+++|++|++++| .+++. .+..+.++++|++|++++| .+++. .+..+..++ +|++|++++
T Consensus 133 -------~~~~-~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 133 -------PIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp -------HHHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred -------HHHH-HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 1122 3445566666666666 44431 3444566667777777776 66543 345566667 777777777
Q ss_pred Cc--CC-ccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccC
Q 003084 586 NN--LH-GLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSC 662 (850)
Q Consensus 586 n~--l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 662 (850)
|. ++ +..+..+ ..+++|++|++++
T Consensus 205 ~~~~~~~~~l~~~~-----------------------------------------------------~~~~~L~~L~l~~ 231 (336)
T 2ast_B 205 YRKNLQKSDLSTLV-----------------------------------------------------RRCPNLVHLDLSD 231 (336)
T ss_dssp CGGGSCHHHHHHHH-----------------------------------------------------HHCTTCSEEECTT
T ss_pred CcccCCHHHHHHHH-----------------------------------------------------hhCCCCCEEeCCC
Confidence 73 32 1111111 1134788888888
Q ss_pred Cc-cccCCCccccCCCCCCEEECcCCc-CCccCcccCCCCCCCCEEECcCCcCcccCChhhhcC-CCCCEEEccCCcCcC
Q 003084 663 NK-LVGHIPPQIGNLTRIQTLNLSHNN-LTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL-NTLAIFIVAYNNLSG 739 (850)
Q Consensus 663 n~-l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~l~~N~l~~ 739 (850)
|. +++..+..+..+++|+.|++++|. ++......++.+++|+.|++++| ++. +.+..+ ..+..|++++|++++
T Consensus 232 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~ 307 (336)
T 2ast_B 232 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTT 307 (336)
T ss_dssp CTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCC
T ss_pred CCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCcc
Confidence 87 666667778888899999999885 33222235778899999999988 442 233333 235666789999998
Q ss_pred CCCCCcc
Q 003084 740 KIPEWTA 746 (850)
Q Consensus 740 ~~p~~~~ 746 (850)
..|..++
T Consensus 308 ~~~~~~~ 314 (336)
T 2ast_B 308 IARPTIG 314 (336)
T ss_dssp TTCSSCS
T ss_pred ccCCccc
Confidence 8887543
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=6.4e-20 Score=191.51 Aligned_cols=193 Identities=23% Similarity=0.352 Sum_probs=114.5
Q ss_pred CCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEE
Q 003084 430 KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVH 509 (850)
Q Consensus 430 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~ 509 (850)
.+++|+.|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+.
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-------------- 100 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-------------- 100 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--------------
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--------------
Confidence 34455555555555543 22 34555556666666665554333 55666666666666655421
Q ss_pred ccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCC
Q 003084 510 LSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 589 (850)
Q Consensus 510 l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 589 (850)
+ .+..+++|+.|++++|++++.. .+..+++|+.|++++|.+++..+ +..+++|+.|++++|.++
T Consensus 101 ----------~--~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 101 ----------S--AIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp ----------G--GGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred ----------h--hhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence 0 3445556666666666665432 25566666666666666654332 556666666666666665
Q ss_pred ccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCC
Q 003084 590 GLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHI 669 (850)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 669 (850)
+..+ +.. +++|++|++++|++++..
T Consensus 165 ~~~~--l~~-----------------------------------------------------l~~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 165 DLTP--LAN-----------------------------------------------------LSKLTTLKADDNKISDIS 189 (308)
T ss_dssp CCGG--GTT-----------------------------------------------------CTTCCEEECCSSCCCCCG
T ss_pred CChh--hcC-----------------------------------------------------CCCCCEEECCCCccCcCh
Confidence 4332 222 236777777777776443
Q ss_pred CccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcc
Q 003084 670 PPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG 715 (850)
Q Consensus 670 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 715 (850)
+ +..+++|+.|+|++|++++..+ +..+++|+.|++++|++++
T Consensus 190 ~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 190 P--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp G--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred h--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 2 6777788888888888775543 6777888888888888764
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=8.3e-22 Score=209.83 Aligned_cols=101 Identities=22% Similarity=0.217 Sum_probs=47.4
Q ss_pred CCEEEccCCcCCCCcchHHhhcC--CCCCEEEccCCccCccccccccCCCCCCeeeccCCcCccc-CCcCCCCCCCCcEE
Q 003084 361 LQFLDLSNNKLTGEIPDHLAMCC--VNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGE-IPQSLSKCSSLKGL 437 (850)
Q Consensus 361 L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L 437 (850)
++.++++++.+. +.. +..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|
T Consensus 49 ~~~l~l~~~~~~---~~~-~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDV-TGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTCBCC---HHH-HHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred heeeccccccCC---HHH-HHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 566777766654 222 2223 5566666666655544333 33445555555555544432 33334444444444
Q ss_pred ECcCCCCCCCCcccccCCCCCcEEECCCC
Q 003084 438 YLNNNNLSGKIPRWLGNLKGLQHIVMPKN 466 (850)
Q Consensus 438 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 466 (850)
++++|.+++..+..+..+++|++|++++|
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence 44444444333334444444444444444
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=3.2e-22 Score=217.11 Aligned_cols=65 Identities=22% Similarity=0.207 Sum_probs=48.1
Q ss_pred cCCeEEccCCccccC----CCcccc--CCCCCCEEECcCCcCCc----cCcccC-CCCCCCCEEECcCCcCcccCC
Q 003084 654 LLAGLDLSCNKLVGH----IPPQIG--NLTRIQTLNLSHNNLTG----TIPLTF-SNLRHIESLDLSYNKLSGKIP 718 (850)
Q Consensus 654 ~L~~L~Ls~n~l~~~----~p~~~~--~l~~L~~L~Ls~N~l~~----~~~~~~-~~l~~L~~L~Ls~N~l~~~~p 718 (850)
+|++|+|++|.+++. +|..+. .+++|+.|+|++|.+++ .+|..+ .++++|+.|++++|++++..|
T Consensus 245 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 677777777776654 445553 38888899999998886 366666 567899999999999887664
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=3.9e-19 Score=189.51 Aligned_cols=244 Identities=18% Similarity=0.142 Sum_probs=158.0
Q ss_pred cEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCE-EEc
Q 003084 313 RFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEF-LSL 391 (850)
Q Consensus 313 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~-L~l 391 (850)
++++.++++++ .+|..+ .+++++|+|++|+++...+.+|.++++|++|+|++|++.+.+|..+|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 56778888887 777655 3477888888888875555677777888888888887765667666666666554 444
Q ss_pred cCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccC
Q 003084 392 SNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGP 471 (850)
Q Consensus 392 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 471 (850)
+.|++....+..|..+++|++|++++|++....+..+....++..+++.++ +.+...
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~-----------------------~~i~~l 144 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-----------------------INIHTI 144 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC-----------------------TTCCEE
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc-----------------------cccccc
Confidence 556666655666666666666666666665444444444445555555432 223322
Q ss_pred cchhccCCC-CCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccC
Q 003084 472 IPVEFCRLD-SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDG 550 (850)
Q Consensus 472 ~~~~~~~l~-~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 550 (850)
.+..|..+. .++.|++++|+++...+..+...+++++++.+++..+.++.+.|.++++|+.|++++|+++...+..|
T Consensus 145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~-- 222 (350)
T 4ay9_X 145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL-- 222 (350)
T ss_dssp CTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC--
T ss_pred cccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh--
Confidence 333333332 45566666666665555555566667777765444457777789999999999999999996655544
Q ss_pred CCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCc
Q 003084 551 LSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 587 (850)
Q Consensus 551 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 587 (850)
.+|+.|.+.++.-...+| .+..+++|+.++++++.
T Consensus 223 -~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 223 -ENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp -TTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred -ccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence 455666655554333555 47889999999998653
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=3e-19 Score=175.16 Aligned_cols=161 Identities=25% Similarity=0.260 Sum_probs=134.6
Q ss_pred CCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccC
Q 003084 527 CSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYN 606 (850)
Q Consensus 527 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~ 606 (850)
.++|++|++++|.+++..+..|.++++|++|++++|++++..+..|..+++|++|++++|.+++..+..|....
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------ 100 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT------ 100 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCcc------
Confidence 45788889999888877777788889999999999988877677788889999999999988877666665533
Q ss_pred CCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcC
Q 003084 607 NNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSH 686 (850)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 686 (850)
+|++|++++|++++..+..|..+++|+.|++++
T Consensus 101 -----------------------------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (208)
T 2o6s_A 101 -----------------------------------------------QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ 133 (208)
T ss_dssp -----------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred -----------------------------------------------CCCEEEcCCCcCcccCHhHhccCCcCCEEECCC
Confidence 799999999999877777788999999999999
Q ss_pred CcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCccc
Q 003084 687 NNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQ 747 (850)
Q Consensus 687 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~ 747 (850)
|++++..+..|..+++|+.|++++|++.+ .++.|++|+++.|.++|.+|.+++.
T Consensus 134 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 134 NQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred CccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcc
Confidence 99998777778999999999999998874 4567889999999999999986543
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=2.9e-19 Score=176.34 Aligned_cols=156 Identities=22% Similarity=0.262 Sum_probs=133.2
Q ss_pred cEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCC
Q 003084 531 VTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSS 610 (850)
Q Consensus 531 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~ 610 (850)
+.++++++.++. +|..+. ++|+.|++++|.+++..+..|..+++|+.|+|++|.+++..|..|..+.
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~---------- 80 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR---------- 80 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS----------
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc----------
Confidence 578899998884 454443 6899999999999987777889999999999999999888888777644
Q ss_pred CCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCC
Q 003084 611 PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLT 690 (850)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 690 (850)
+|++|+|++|+++...+..|.++++|+.|+|++|+++
T Consensus 81 -------------------------------------------~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~ 117 (220)
T 2v9t_B 81 -------------------------------------------SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117 (220)
T ss_dssp -------------------------------------------SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred -------------------------------------------CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC
Confidence 8999999999999766667888999999999999999
Q ss_pred ccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCC
Q 003084 691 GTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP 742 (850)
Q Consensus 691 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p 742 (850)
+..|..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++.|.++
T Consensus 118 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 8888899999999999999999998888888889999999999999887654
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=5.9e-19 Score=188.16 Aligned_cols=206 Identities=24% Similarity=0.214 Sum_probs=129.7
Q ss_pred CEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCC-cCCCCCCCCcE-EEC
Q 003084 362 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIP-QSLSKCSSLKG-LYL 439 (850)
Q Consensus 362 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~-L~l 439 (850)
++++.++++++ .+|..+ .+++++|++++|+|+...+..|.++++|++|+|++|++.+.+| .+|.+++++.+ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 46777777777 777655 3567788888887776666667777777777777777655443 35666666654 445
Q ss_pred cCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCC-cCCCCCCCCcCCCcccEEEccCcccccc
Q 003084 440 NNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDN-NISGSLPSCFYPLSIKQVHLSKNMLHGQ 518 (850)
Q Consensus 440 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~L~~L~l~~n~~~~~ 518 (850)
..|+++...|..|..+++|++|++++|.+....+..+....++..+++.++ .+. .
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~------------------------~ 143 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH------------------------T 143 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC------------------------E
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc------------------------c
Confidence 556676665666666677777777766666555545555555556665442 332 3
Q ss_pred cCccccCCCC-CCcEEECcCCcCCCCcCccccCCCCCCEEECcC-CcCccCCchhccCCCCCCEEeCCCCcCCccCCCCc
Q 003084 519 LKEGTFFNCS-SLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAH-NNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 596 (850)
Q Consensus 519 ~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 596 (850)
++...|..+. .++.|++++|+++.+.+..| ...+|+.|++++ |.++...+..|.++++|++|++++|+++.+++..|
T Consensus 144 l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~ 222 (350)
T 4ay9_X 144 IERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL 222 (350)
T ss_dssp ECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC
T ss_pred ccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh
Confidence 3333455443 46677777777775444444 445677777764 55554444566777777777777777766555444
No 99
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=2.1e-19 Score=192.32 Aligned_cols=180 Identities=28% Similarity=0.271 Sum_probs=133.4
Q ss_pred cEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCcccc-CCCCCCEEECcCCcCccCCchhccCCCCCCEEeCC
Q 003084 506 KQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWID-GLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLS 584 (850)
Q Consensus 506 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 584 (850)
+.++++++.++ .+|. .+ .+.++.|+|++|++++..+..|. ++++|+.|+|++|++++..+..|.++++|++|+|+
T Consensus 21 ~~l~c~~~~l~-~iP~-~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQ-SL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCS-SC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCc-cC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 56778877775 3444 22 24577888888888877777776 78888888888888887777778888888888888
Q ss_pred CCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCc
Q 003084 585 DNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNK 664 (850)
Q Consensus 585 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 664 (850)
+|++++..+..|..+. +|++|+|++|+
T Consensus 97 ~N~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~L~~N~ 123 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQ-----------------------------------------------------ALEVLLLYNNH 123 (361)
T ss_dssp SSCCCEECTTTTTTCT-----------------------------------------------------TCCEEECCSSC
T ss_pred CCcCCcCCHHHhCCCc-----------------------------------------------------CCCEEECCCCc
Confidence 8888777666665543 78888888888
Q ss_pred cccCCCccccCCCCCCEEECcCCcCCccCcccC---CCCCCCCEEECcCCcCcccCChhhhcCCC--CCEEEccCCcCcC
Q 003084 665 LVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTF---SNLRHIESLDLSYNKLSGKIPRQLVDLNT--LAIFIVAYNNLSG 739 (850)
Q Consensus 665 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~l~~N~l~~ 739 (850)
+++..|..|.++++|+.|+|++|++++..+..| ..+++|+.|||++|++++..+..+..++. ++.|++++|++.|
T Consensus 124 i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 124 IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 887777788888888888888888886655555 56788888888888888666667777776 3778888888876
Q ss_pred CCC
Q 003084 740 KIP 742 (850)
Q Consensus 740 ~~p 742 (850)
.+.
T Consensus 204 ~C~ 206 (361)
T 2xot_A 204 DCK 206 (361)
T ss_dssp CHH
T ss_pred CcC
Confidence 553
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=3.4e-19 Score=199.32 Aligned_cols=83 Identities=24% Similarity=0.357 Sum_probs=43.1
Q ss_pred cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCC-------CEEECcCCcCcccCChhhhcCCC
Q 003084 654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHI-------ESLDLSYNKLSGKIPRQLVDLNT 726 (850)
Q Consensus 654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------~~L~Ls~N~l~~~~p~~l~~l~~ 726 (850)
+|++|+|++|++++ +|. |. ++|+.|+|++|+|+ .+|. |.. +| +.|+|++|+|+ .+|..+..+++
T Consensus 161 ~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~ 231 (571)
T 3cvr_A 161 SLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDP 231 (571)
T ss_dssp TCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCT
T ss_pred CcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCC
Confidence 45555555555554 343 43 55555555555555 3333 332 44 55666666555 34555555556
Q ss_pred CCEEEccCCcCcCCCCCCc
Q 003084 727 LAIFIVAYNNLSGKIPEWT 745 (850)
Q Consensus 727 L~~L~l~~N~l~~~~p~~~ 745 (850)
|+.|++++|++++.+|..+
T Consensus 232 L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 232 TCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp TEEEECCSSSCCHHHHHHH
T ss_pred CCEEEeeCCcCCCcCHHHH
Confidence 6666666666655555433
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=7.8e-19 Score=172.25 Aligned_cols=163 Identities=28% Similarity=0.265 Sum_probs=135.5
Q ss_pred CcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEe
Q 003084 503 LSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLD 582 (850)
Q Consensus 503 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 582 (850)
++++.|++++|.+.+ ++...|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccCc-CChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 355555555555543 3333678899999999999999987777889999999999999999977777788999999999
Q ss_pred CCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccC
Q 003084 583 LSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSC 662 (850)
Q Consensus 583 Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 662 (850)
+++|.+++..+..|.... +|++|++++
T Consensus 107 L~~N~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~l~~ 133 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLT-----------------------------------------------------QLKDLRLYQ 133 (208)
T ss_dssp CCSSCCCCCCTTTTTTCT-----------------------------------------------------TCCEEECCS
T ss_pred cCCCcCcccCHhHhccCC-----------------------------------------------------cCCEEECCC
Confidence 999999887776665543 899999999
Q ss_pred CccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCC
Q 003084 663 NKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNT 726 (850)
Q Consensus 663 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 726 (850)
|++++..+..|..+++|+.|++++|.+.+ .+++|+.|+++.|+++|.+|+.+..++.
T Consensus 134 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 134 NQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 99998777778999999999999998774 4568999999999999999998887765
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=6.5e-19 Score=173.84 Aligned_cols=157 Identities=22% Similarity=0.262 Sum_probs=139.7
Q ss_pred cEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCc-hhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCC
Q 003084 531 VTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP-IQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNS 609 (850)
Q Consensus 531 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~ 609 (850)
+.+++++|.++. +|..+ .+.++.|++++|++++..+ ..|..+++|+.|++++|.+++..+..|..+.
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~--------- 81 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS--------- 81 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT---------
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC---------
Confidence 589999999985 45544 3467899999999997754 4588999999999999999988887777644
Q ss_pred CCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcC
Q 003084 610 SPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNL 689 (850)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 689 (850)
+|++|+|++|++++..+..|.++++|++|+|++|++
T Consensus 82 --------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 117 (220)
T 2v70_A 82 --------------------------------------------GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI 117 (220)
T ss_dssp --------------------------------------------TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCC
T ss_pred --------------------------------------------CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcC
Confidence 899999999999988888899999999999999999
Q ss_pred CccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCC
Q 003084 690 TGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 743 (850)
Q Consensus 690 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~ 743 (850)
++..|..|..+++|+.|+|++|++++..|..|..+++|+.|++++|++.|.++.
T Consensus 118 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred CeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 999899999999999999999999998899999999999999999999988764
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=1.1e-18 Score=172.15 Aligned_cols=113 Identities=17% Similarity=0.256 Sum_probs=50.3
Q ss_pred cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcc
Q 003084 654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 733 (850)
Q Consensus 654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 733 (850)
+|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|+.|+|++|++++..|..|..+++|+.|+++
T Consensus 58 ~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 137 (220)
T 2v70_A 58 QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY 137 (220)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECT
T ss_pred CCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECC
Confidence 34444444444444333344444444444444444444444444444444444444444444444444444444444444
Q ss_pred CCcCcCCCCCCccccCCCCccccCCCCCCCCCC
Q 003084 734 YNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLP 766 (850)
Q Consensus 734 ~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~ 766 (850)
+|.+++..|..+..+..+..+.+++||+.|+|+
T Consensus 138 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 138 DNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 444444444444444444444444444444443
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=1.5e-18 Score=171.12 Aligned_cols=113 Identities=23% Similarity=0.280 Sum_probs=57.8
Q ss_pred cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcc
Q 003084 654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 733 (850)
Q Consensus 654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 733 (850)
+|++|+|++|++++..|..|.++++|++|+|++|+++...+..|..+++|+.|+|++|++++..|..|..+++|+.|+++
T Consensus 57 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 136 (220)
T 2v9t_B 57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY 136 (220)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECC
Confidence 45555555555554445555555555555555555554444444555555555555555554445555555555555555
Q ss_pred CCcCcCCCCCCccccCCCCccccCCCCCCCCCC
Q 003084 734 YNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLP 766 (850)
Q Consensus 734 ~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~ 766 (850)
+|++++..+..+..+..+..+.+.+||+.|+|+
T Consensus 137 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 137 DNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 555554444444444445555555555555554
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=5.5e-18 Score=168.46 Aligned_cols=157 Identities=25% Similarity=0.244 Sum_probs=137.9
Q ss_pred CCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCC
Q 003084 529 SLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNN 608 (850)
Q Consensus 529 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 608 (850)
+-+.++++++.++. +|..+ .++|++|++++|.+.+..+..|..+++|++|+|++|++.+..+..|..++
T Consensus 20 s~~~v~c~~~~l~~-ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~-------- 88 (229)
T 3e6j_A 20 SGTTVDCRSKRHAS-VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT-------- 88 (229)
T ss_dssp ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT--------
T ss_pred eCCEeEccCCCcCc-cCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC--------
Confidence 35679999999884 45443 38899999999999988899999999999999999999887777666544
Q ss_pred CCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCc
Q 003084 609 SSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNN 688 (850)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 688 (850)
+|++|+|++|++++..+..|..+++|+.|+|++|+
T Consensus 89 ---------------------------------------------~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~ 123 (229)
T 3e6j_A 89 ---------------------------------------------QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK 123 (229)
T ss_dssp ---------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ---------------------------------------------CcCEEECCCCcCCccChhHhCcchhhCeEeccCCc
Confidence 89999999999998777788999999999999999
Q ss_pred CCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCC
Q 003084 689 LTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP 742 (850)
Q Consensus 689 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p 742 (850)
++ .+|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.|.++
T Consensus 124 l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 124 LT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 99 678888999999999999999998777889999999999999999998776
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=2.4e-18 Score=184.13 Aligned_cols=112 Identities=25% Similarity=0.247 Sum_probs=54.4
Q ss_pred EEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccC-CCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCC
Q 003084 484 ILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFF-NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHN 562 (850)
Q Consensus 484 ~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 562 (850)
.++++++.++. +|.. .+..++.|++++|.+++..+. .|. .+++|+.|+|++|++++..+..|.++++|++|+|++|
T Consensus 22 ~l~c~~~~l~~-iP~~-~~~~l~~L~Ls~N~l~~l~~~-~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLPN-VPQS-LPSYTALLDLSHNNLSRLRAE-WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCSS-CCSS-CCTTCSEEECCSSCCCEECTT-SSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCc-cCcc-CCCCCCEEECCCCCCCccChh-hhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 45555555442 2221 123455555555555432222 343 5555555555555555444444555555555555555
Q ss_pred cCccCCchhccCCCCCCEEeCCCCcCCccCCCCccc
Q 003084 563 NLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 598 (850)
Q Consensus 563 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 598 (850)
++++..+..|.++++|+.|+|++|++++..+..|..
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~ 134 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED 134 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCC
Confidence 555444444555555555555555555444444433
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=6.9e-18 Score=167.71 Aligned_cols=155 Identities=28% Similarity=0.284 Sum_probs=105.2
Q ss_pred cccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeC
Q 003084 504 SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL 583 (850)
Q Consensus 504 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 583 (850)
+.+.++.+++.++ .+|.+ -.++|+.|++++|.+++..|..|.++++|+.|+|++|++....+..|..+++|+.|+|
T Consensus 20 s~~~v~c~~~~l~-~ip~~---~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAG---IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp ETTEEECTTSCCS-SCCSC---CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred eCCEeEccCCCcC-ccCCC---CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 4556677666664 34431 1266777777777777666677777777777777777776555566677777777777
Q ss_pred CCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCC
Q 003084 584 SDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCN 663 (850)
Q Consensus 584 s~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n 663 (850)
++|++++..+..|..+. +|++|+|++|
T Consensus 96 s~N~l~~l~~~~~~~l~-----------------------------------------------------~L~~L~Ls~N 122 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLV-----------------------------------------------------HLKELFMCCN 122 (229)
T ss_dssp CSSCCCCCCTTTTTTCT-----------------------------------------------------TCCEEECCSS
T ss_pred CCCcCCccChhHhCcch-----------------------------------------------------hhCeEeccCC
Confidence 77777766655554433 6777777777
Q ss_pred ccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCccc
Q 003084 664 KLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK 716 (850)
Q Consensus 664 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 716 (850)
+++ .+|..+..+++|+.|+|++|++++..+..|..+++|+.|++++|++...
T Consensus 123 ~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 123 KLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred ccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 777 5666677777777777777777766666677777777777777777644
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=1.1e-17 Score=187.01 Aligned_cols=189 Identities=30% Similarity=0.359 Sum_probs=125.3
Q ss_pred CCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccC
Q 003084 433 SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSK 512 (850)
Q Consensus 433 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~ 512 (850)
+++.|++++|.+++ +|..+. ++|++|++++|.++. +| ..+++|+.|++++|.+++ +|.
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-------------- 117 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-------------- 117 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC--------------
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch--------------
Confidence 78888888888875 555442 678888888888773 44 346777777777777764 222
Q ss_pred cccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccC
Q 003084 513 NMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLI 592 (850)
Q Consensus 513 n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 592 (850)
+.. +|+.|++++|++++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|++++++
T Consensus 118 -----------l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp 176 (571)
T 3cvr_A 118 -----------LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLP 176 (571)
T ss_dssp -----------CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCC
T ss_pred -----------hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcc
Confidence 222 66666666666665 333 45667777777777764 333 4567777777777776532
Q ss_pred CCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCcc
Q 003084 593 PSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQ 672 (850)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 672 (850)
+ |. . +|+.|+|++|+|+ .+|.
T Consensus 177 ~--l~--~-----------------------------------------------------~L~~L~Ls~N~L~-~lp~- 197 (571)
T 3cvr_A 177 E--LP--E-----------------------------------------------------SLEALDVSTNLLE-SLPA- 197 (571)
T ss_dssp C--CC--T-----------------------------------------------------TCCEEECCSSCCS-SCCC-
T ss_pred h--hh--C-----------------------------------------------------CCCEEECcCCCCC-chhh-
Confidence 2 32 1 5777777777777 4555
Q ss_pred ccCCCCC-------CEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCC
Q 003084 673 IGNLTRI-------QTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNT 726 (850)
Q Consensus 673 ~~~l~~L-------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 726 (850)
|.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..+..++.
T Consensus 198 ~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 198 VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 543 56 88888888887 46666667888888888888888888877776543
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=2.5e-17 Score=170.21 Aligned_cols=153 Identities=25% Similarity=0.362 Sum_probs=120.9
Q ss_pred ccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccc
Q 003084 523 TFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLH 602 (850)
Q Consensus 523 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 602 (850)
.+..+++|+.|++++|++++..+ +..+++|+.|++++|.+++. ..+..+++|++|++++|++++. ..+..
T Consensus 63 ~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~---- 132 (291)
T 1h6t_A 63 GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVH---- 132 (291)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGG----
T ss_pred hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcC----
Confidence 36667888888888888886544 78888888888888888752 3478888888888888888753 12222
Q ss_pred cccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEE
Q 003084 603 ESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTL 682 (850)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 682 (850)
+++|++|++++|++++. ..+..+++|+.|
T Consensus 133 -------------------------------------------------l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 161 (291)
T 1h6t_A 133 -------------------------------------------------LPQLESLYLGNNKITDI--TVLSRLTKLDTL 161 (291)
T ss_dssp -------------------------------------------------CTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred -------------------------------------------------CCCCCEEEccCCcCCcc--hhhccCCCCCEE
Confidence 34788999999988865 578888999999
Q ss_pred ECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCC
Q 003084 683 NLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGK 740 (850)
Q Consensus 683 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 740 (850)
++++|++++..| +..+++|+.|++++|++++ +| .+..+++|+.|++++|+++..
T Consensus 162 ~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 162 SLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred EccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence 999999987655 8889999999999999985 34 488899999999999988763
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=7.1e-17 Score=182.85 Aligned_cols=80 Identities=28% Similarity=0.428 Sum_probs=36.9
Q ss_pred cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcc
Q 003084 654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 733 (850)
Q Consensus 654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 733 (850)
+|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|++++. ..+..+++|+.|+++
T Consensus 132 ~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~ 205 (605)
T 1m9s_A 132 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELF 205 (605)
T ss_dssp TCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECC
T ss_pred ccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEcc
Confidence 444444444444432 334444445555555554444333 44444555555555544432 234444455555555
Q ss_pred CCcCcC
Q 003084 734 YNNLSG 739 (850)
Q Consensus 734 ~N~l~~ 739 (850)
+|++++
T Consensus 206 ~N~l~~ 211 (605)
T 1m9s_A 206 SQECLN 211 (605)
T ss_dssp SEEEEC
T ss_pred CCcCcC
Confidence 554443
No 111
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.71 E-value=2.7e-17 Score=169.99 Aligned_cols=185 Identities=22% Similarity=0.335 Sum_probs=136.4
Q ss_pred ECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCccccc
Q 003084 438 YLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHG 517 (850)
Q Consensus 438 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~ 517 (850)
.+..+.+.+. ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+++
T Consensus 30 ~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~----------------------- 82 (291)
T 1h6t_A 30 NLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTD----------------------- 82 (291)
T ss_dssp HTTCSCTTSE--ECHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCC-----------------------
T ss_pred HhcCCCcccc--cchhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCC-----------------------
Confidence 3444444332 2234566677777777766643 235666677777776666652
Q ss_pred ccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcc
Q 003084 518 QLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFD 597 (850)
Q Consensus 518 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 597 (850)
. + .+..+++|+.|++++|.+++. ..+..+++|++|++++|++.+. ..+..+++|+.|++++|++++. ..+.
T Consensus 83 ~-~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~ 153 (291)
T 1h6t_A 83 I-K--PLANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLS 153 (291)
T ss_dssp C-G--GGTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGG
T ss_pred C-c--ccccCCCCCEEECCCCcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhc
Confidence 2 1 267788899999999988753 3488889999999999998854 4678889999999999988764 2232
Q ss_pred cCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCC
Q 003084 598 NTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLT 677 (850)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 677 (850)
. +++|++|++++|++++..| +..++
T Consensus 154 ~-----------------------------------------------------l~~L~~L~L~~N~l~~~~~--l~~l~ 178 (291)
T 1h6t_A 154 R-----------------------------------------------------LTKLDTLSLEDNQISDIVP--LAGLT 178 (291)
T ss_dssp G-----------------------------------------------------CTTCSEEECCSSCCCCCGG--GTTCT
T ss_pred c-----------------------------------------------------CCCCCEEEccCCccccchh--hcCCC
Confidence 2 3489999999999986554 88999
Q ss_pred CCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcc
Q 003084 678 RIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG 715 (850)
Q Consensus 678 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 715 (850)
+|+.|++++|.+++. | .+..+++|+.|++++|+++.
T Consensus 179 ~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 179 KLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred ccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 999999999999864 4 48899999999999999875
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=8.8e-17 Score=182.10 Aligned_cols=166 Identities=25% Similarity=0.362 Sum_probs=103.9
Q ss_pred EEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCc
Q 003084 388 FLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH 467 (850)
Q Consensus 388 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 467 (850)
.+.+..+.+....+ +..+++|+.|++++|.+... + .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.
T Consensus 25 ~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 25 KDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK 98 (605)
T ss_dssp HHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred HHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC
Confidence 34444454443322 34566677777777766532 2 35666667777777666664433 5566666666666666
Q ss_pred cccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCcc
Q 003084 468 LEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 547 (850)
Q Consensus 468 l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 547 (850)
+.+. ..+..+++|+.|++++|.+.+ ++ .+..+++|+.|+|++|.+++. ..
T Consensus 99 l~~l--~~l~~l~~L~~L~Ls~N~l~~------------------------l~--~l~~l~~L~~L~Ls~N~l~~l--~~ 148 (605)
T 1m9s_A 99 IKDL--SSLKDLKKLKSLSLEHNGISD------------------------IN--GLVHLPQLESLYLGNNKITDI--TV 148 (605)
T ss_dssp CCCC--TTSTTCTTCCEEECTTSCCCC------------------------CG--GGGGCTTCSEEECCSSCCCCC--GG
T ss_pred CCCC--hhhccCCCCCEEEecCCCCCC------------------------Cc--cccCCCccCEEECCCCccCCc--hh
Confidence 6532 245555566666665555542 11 456677788888888877755 55
Q ss_pred ccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCcc
Q 003084 548 IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL 591 (850)
Q Consensus 548 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 591 (850)
+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|++++.
T Consensus 149 l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 149 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp GGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred hcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC
Confidence 7777788888888887776555 77777777777777777653
No 113
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=2.6e-16 Score=151.53 Aligned_cols=111 Identities=30% Similarity=0.432 Sum_probs=78.4
Q ss_pred cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcc
Q 003084 654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 733 (850)
Q Consensus 654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 733 (850)
+|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|+.|+|++|++++..|..+..+++|+.|+++
T Consensus 55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 67777777777777777777777888888888888877777777778888888888888887777777888888888888
Q ss_pred CCcCcCCCCCCccccCC-CCccccCCCCCCCCCC
Q 003084 734 YNNLSGKIPEWTAQFAT-FNKSSYDGNPFLCGLP 766 (850)
Q Consensus 734 ~N~l~~~~p~~~~~~~~-~~~~~~~~n~~~c~~~ 766 (850)
+|+++|.++. ..+.. +....+.++...|..|
T Consensus 135 ~N~l~c~c~l--~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 135 SNPFNCNCHL--AWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp TCCBCCSGGG--HHHHHHHHHHCCSGGGCBBCSS
T ss_pred CCCccCcCcc--hHHHHHHHHcCCCCCCCCCCCC
Confidence 8888776653 11211 2222344555566554
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=5e-17 Score=165.09 Aligned_cols=168 Identities=20% Similarity=0.233 Sum_probs=133.2
Q ss_pred ccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCC
Q 003084 505 IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLS 584 (850)
Q Consensus 505 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 584 (850)
+..++++++.+++.. .+..+++|+.|++++|.++.. + .+..+++|+.|++++|++++..+ +..+++|++|+++
T Consensus 21 l~~l~l~~~~i~~~~---~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV---SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHTCSCTTSEE---CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHhcCCCccccc---chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 334444444443222 466778899999999988854 4 68889999999999999986554 8889999999999
Q ss_pred CCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCc
Q 003084 585 DNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNK 664 (850)
Q Consensus 585 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 664 (850)
+|++++..+... ++|++|++++|+
T Consensus 94 ~N~l~~l~~~~~--------------------------------------------------------~~L~~L~L~~N~ 117 (263)
T 1xeu_A 94 RNRLKNLNGIPS--------------------------------------------------------ACLSRLFLDNNE 117 (263)
T ss_dssp SSCCSCCTTCCC--------------------------------------------------------SSCCEEECCSSC
T ss_pred CCccCCcCcccc--------------------------------------------------------CcccEEEccCCc
Confidence 999876433211 279999999999
Q ss_pred cccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCC
Q 003084 665 LVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKI 741 (850)
Q Consensus 665 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~ 741 (850)
+++. ..+..+++|+.|++++|++++. + .++.+++|+.|++++|++++. ..+..+++|+.|++++|++++..
T Consensus 118 l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 118 LRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp CSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred cCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 9864 3688999999999999999865 3 688899999999999999876 67889999999999999998764
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=9.2e-17 Score=155.69 Aligned_cols=154 Identities=18% Similarity=0.248 Sum_probs=122.3
Q ss_pred CCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccc
Q 003084 525 FNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHES 604 (850)
Q Consensus 525 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~ 604 (850)
..+++|+.|++++|.++. +| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..++
T Consensus 41 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~---- 112 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT---- 112 (197)
T ss_dssp HHHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT----
T ss_pred hhcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCC----
Confidence 456788889999888883 44 5788889999999988765 234688889999999999988876666665533
Q ss_pred cCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEEC
Q 003084 605 YNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNL 684 (850)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 684 (850)
+|++|++++|++++..|..+..+++|++|++
T Consensus 113 -------------------------------------------------~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L 143 (197)
T 4ezg_A 113 -------------------------------------------------SLTLLDISHSAHDDSILTKINTLPKVNSIDL 143 (197)
T ss_dssp -------------------------------------------------TCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred -------------------------------------------------CCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence 7999999999998777888999999999999
Q ss_pred cCCc-CCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcC
Q 003084 685 SHNN-LTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSG 739 (850)
Q Consensus 685 s~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 739 (850)
++|. ++ .+| .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus 144 ~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 144 SYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred cCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 9998 65 445 68889999999999999985 34 78889999999999998753
No 116
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=4e-17 Score=172.39 Aligned_cols=221 Identities=13% Similarity=0.080 Sum_probs=118.7
Q ss_pred CCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEc
Q 003084 431 CSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHL 510 (850)
Q Consensus 431 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l 510 (850)
|++|+.+++.+ .++.+.+.+|.+|++|+.+++++|.+..+.+.+|.++.++..+....+.....
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~--------------- 163 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRF--------------- 163 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHT---------------
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhc---------------
Confidence 55666666655 55544445555566666666666555555555555555555444433211000
Q ss_pred cCcccccccCccccCCCCCCc-EEECcCCcCCCCcCcc-c---cCCCCCCEEECcCCcCccCCchhc-cCCCCCCEEeCC
Q 003084 511 SKNMLHGQLKEGTFFNCSSLV-TLDLSYNYLNGSIPDW-I---DGLSQLSHLNLAHNNLEGEVPIQL-CRLNQLQLLDLS 584 (850)
Q Consensus 511 ~~n~~~~~~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~-~---~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls 584 (850)
...+...+|.++..|+ .+.+.... .++.. + ....+++.+.+.++-.. .....+ ..+++|+.++++
T Consensus 164 -----~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~ 234 (329)
T 3sb4_A 164 -----KNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDIS 234 (329)
T ss_dssp -----STTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECT
T ss_pred -----cccccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECC
Confidence 0112222444555554 33333211 11111 1 12344555555443211 111111 125666667776
Q ss_pred CCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCc
Q 003084 585 DNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNK 664 (850)
Q Consensus 585 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 664 (850)
+|+++.+.+.+|.++. +|++|+|++|
T Consensus 235 ~n~i~~I~~~aF~~~~-----------------------------------------------------~L~~l~l~~n- 260 (329)
T 3sb4_A 235 KTNATTIPDFTFAQKK-----------------------------------------------------YLLKIKLPHN- 260 (329)
T ss_dssp TBCCCEECTTTTTTCT-----------------------------------------------------TCCEEECCTT-
T ss_pred CCCcceecHhhhhCCC-----------------------------------------------------CCCEEECCcc-
Confidence 6666666666666544 5666777666
Q ss_pred cccCCCccccCCCCCC-EEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEE
Q 003084 665 LVGHIPPQIGNLTRIQ-TLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFI 731 (850)
Q Consensus 665 l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 731 (850)
++.+.+.+|.++++|+ .+++.+ +++.+.+.+|.++++|+.+++++|+++.+.+.+|.++++|+.++
T Consensus 261 i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 261 LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 5555566677777777 777776 66656667777777777777777777766666777777777665
No 117
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=3.4e-17 Score=172.95 Aligned_cols=259 Identities=12% Similarity=0.093 Sum_probs=173.7
Q ss_pred CCCCCeeeccCCcCc--ccCCcCCCCCCCCcEEECcCCCCCCCCcccccC--------CCCCcEEECCCCccccCcchhc
Q 003084 407 LRNLRWLLLEGNHFV--GEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGN--------LKGLQHIVMPKNHLEGPIPVEF 476 (850)
Q Consensus 407 l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~ 476 (850)
+++|+.|+|++|++. ...+..+ +.+..+.+..+. +.+..|.+ +++|+.+++.+ .++.+...+|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred hccCeEEecCcceeEEecCccccc---cccccccccccc---cCHHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence 555666666666655 2221122 123444444443 23345556 88888888887 7776777778
Q ss_pred cCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCC----cCCCCcCccccCCC
Q 003084 477 CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYN----YLNGSIPDWIDGLS 552 (850)
Q Consensus 477 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n----~l~~~~~~~~~~l~ 552 (850)
.+|++|+.+++++|.+. .++..+|.++.++..+....+ .........|.++.
T Consensus 121 ~~~~~L~~l~l~~n~i~------------------------~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAP------------------------NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp TTCTTCCEEEBCCSSCC------------------------EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred hcCcccceEEcCCCCcc------------------------ccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 88888888888887765 233346777777766666552 22333445677777
Q ss_pred CCC-EEECcCCcCccCCchhc----cCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCc
Q 003084 553 QLS-HLNLAHNNLEGEVPIQL----CRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGS 627 (850)
Q Consensus 553 ~L~-~L~L~~n~l~~~~~~~l----~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (850)
+|+ .+.+.... .++..+ ....+++.+.+.++-.. . .+..
T Consensus 177 ~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~---~~~~----------------------------- 220 (329)
T 3sb4_A 177 PLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-A---DFKL----------------------------- 220 (329)
T ss_dssp CCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-H---HHHH-----------------------------
T ss_pred ccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-H---HHHH-----------------------------
Confidence 777 55554332 112111 12456667766654110 0 0000
Q ss_pred hhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCC-EE
Q 003084 628 VEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIE-SL 706 (850)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L 706 (850)
....+++|++|+|++|+++.+.+..|.++++|+.|+|++| ++.+.+.+|.++++|+ .+
T Consensus 221 --------------------l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l 279 (329)
T 3sb4_A 221 --------------------IRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTL 279 (329)
T ss_dssp --------------------HHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred --------------------HHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEE
Confidence 0011458999999999999888888999999999999998 8888889999999999 99
Q ss_pred ECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCCCCccccCCCCcc
Q 003084 707 DLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKS 754 (850)
Q Consensus 707 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~ 754 (850)
++.+ .++.+.+.+|.++++|+.+++++|.++...+.+|..+..++.+
T Consensus 280 ~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 280 ELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp EECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred EEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 9999 7887888999999999999999999997777777666666544
No 118
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.68 E-value=1.2e-15 Score=165.35 Aligned_cols=328 Identities=14% Similarity=0.132 Sum_probs=171.0
Q ss_pred hhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCC
Q 003084 329 EIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLR 408 (850)
Q Consensus 329 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 408 (850)
.+|..+.+|+++.+..+ ++.+...+|.++.+|+.+++.++ ++ .++...|.++.+|+.+.+..+ +......+|.++.
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD 140 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence 33333344444444321 33233334444444444444332 33 344444444444444444322 2223333444443
Q ss_pred CCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEecc
Q 003084 409 NLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDIS 488 (850)
Q Consensus 409 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls 488 (850)
.++....... ......+|.+|++|+.+.+.++. ..+....|.++.+|+.+.+..+ +..+...+|.++..|+.+.+.
T Consensus 141 ~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 141 FKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp CSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred ccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence 2222211111 11233456666666666665443 2244455666666666666554 333445566666777666665
Q ss_pred CCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCC
Q 003084 489 DNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV 568 (850)
Q Consensus 489 ~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 568 (850)
.+... .....+...+|+.+.+.... ..+...+|.++..++.+.+..+... +....|.++..++.+....+.+ .
T Consensus 217 ~~~~~-i~~~~~~~~~l~~i~ip~~~--~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~ 289 (394)
T 4fs7_A 217 NSLYY-LGDFALSKTGVKNIIIPDSF--TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---P 289 (394)
T ss_dssp TTCCE-ECTTTTTTCCCCEEEECTTC--CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---C
T ss_pred CCceE-eehhhcccCCCceEEECCCc--eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---c
Confidence 54322 22223334556666554332 1344446777777777777765433 5556677777777777665543 2
Q ss_pred chhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcch
Q 003084 569 PIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQ 648 (850)
Q Consensus 569 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (850)
...|..+.+|+.+.+.++ +..+...+|.++.
T Consensus 290 ~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~------------------------------------------------ 320 (394)
T 4fs7_A 290 EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCT------------------------------------------------ 320 (394)
T ss_dssp TTTTTTCTTCCEEEECTT-CCEECTTTTTTCT------------------------------------------------
T ss_pred cccccccccccccccccc-cceechhhhcCCC------------------------------------------------
Confidence 345666777777777543 4555555555543
Q ss_pred hhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCC
Q 003084 649 GRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLA 728 (850)
Q Consensus 649 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 728 (850)
+|+++++..+ ++.+...+|.++++|+.+++..+ ++.+...+|.++++|+.+++..+ ++ .+..+|.++++|+
T Consensus 321 -----~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~ 391 (394)
T 4fs7_A 321 -----SLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFK 391 (394)
T ss_dssp -----TCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEE
T ss_pred -----CCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCc
Confidence 5666666533 55455566777777777777655 55555666777777777776544 22 2334555555554
Q ss_pred E
Q 003084 729 I 729 (850)
Q Consensus 729 ~ 729 (850)
.
T Consensus 392 ~ 392 (394)
T 4fs7_A 392 W 392 (394)
T ss_dssp E
T ss_pred E
Confidence 4
No 119
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.67 E-value=1.9e-15 Score=162.54 Aligned_cols=248 Identities=17% Similarity=0.208 Sum_probs=161.2
Q ss_pred CcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCc
Q 003084 425 PQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLS 504 (850)
Q Consensus 425 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~ 504 (850)
..+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+..+...+|.+|++|+.+++++|.+.......|...+
T Consensus 129 ~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~ 204 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAG 204 (401)
T ss_dssp TTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCC
T ss_pred HhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecc
Confidence 3344443 4555555443 333444444443 455555553 34444455566666666666666655555555555556
Q ss_pred ccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCC
Q 003084 505 IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLS 584 (850)
Q Consensus 505 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 584 (850)
|+.+.+..+ + ..++..+|.+|++|+.+++..+ ++.+...+|.+ .+|+.+.+. +.++.+...+|.+|++|+.+++.
T Consensus 205 L~~l~lp~~-l-~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~ 279 (401)
T 4fdw_A 205 IEEVLLPVT-L-KEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTY 279 (401)
T ss_dssp CSEEECCTT-C-CEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEE
T ss_pred cCEEEeCCc-h-heehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeC
Confidence 666666533 2 2556668888888999988874 55566677777 688888884 45665667788888889988888
Q ss_pred CCcCC-----ccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEE
Q 003084 585 DNNLH-----GLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLD 659 (850)
Q Consensus 585 ~n~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 659 (850)
+|.+. .+.+.+|.++. +|+.++
T Consensus 280 ~~~~~~~~~~~I~~~aF~~c~-----------------------------------------------------~L~~l~ 306 (401)
T 4fdw_A 280 GSTFNDDPEAMIHPYCLEGCP-----------------------------------------------------KLARFE 306 (401)
T ss_dssp SSCCCCCTTCEECTTTTTTCT-----------------------------------------------------TCCEEC
T ss_pred CccccCCcccEECHHHhhCCc-----------------------------------------------------cCCeEE
Confidence 77654 34445555443 678888
Q ss_pred ccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCC-CCCEEEccCCcC
Q 003084 660 LSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN-TLAIFIVAYNNL 737 (850)
Q Consensus 660 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~l~~N~l 737 (850)
+. +.++.+...+|.++++|+.++|..| ++.+.+.+|.++ +|+.+++++|.+....+..|.+++ .++.+.+..+.+
T Consensus 307 l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 307 IP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred eC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 87 4466566677888888888888554 666677788888 888888888877766666777764 667777766654
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=3.5e-16 Score=150.67 Aligned_cols=115 Identities=26% Similarity=0.359 Sum_probs=108.1
Q ss_pred cCCeEEccCCccccCCCc-cccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEc
Q 003084 654 LLAGLDLSCNKLVGHIPP-QIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIV 732 (850)
Q Consensus 654 ~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 732 (850)
.+++|++++|++++..+. .|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..|..|..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 689999999999977665 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCcCCCCCCccccCCCCccccCCCCCCCCCCCC
Q 003084 733 AYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLP 768 (850)
Q Consensus 733 ~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~ 768 (850)
++|++++.+|..+..+..+..+.+++||+.|+|++.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~ 145 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA 145 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcch
Confidence 999999999998899999999999999999999853
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=4.3e-16 Score=149.88 Aligned_cols=114 Identities=23% Similarity=0.378 Sum_probs=106.0
Q ss_pred cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcc
Q 003084 654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 733 (850)
Q Consensus 654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 733 (850)
.|++|++++|+++ .+|..|.++++|+.|+|++|.|++..+..|..+++|+.|+|++|++++..|..|..+++|+.|+++
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 6999999999998 678899999999999999999998888999999999999999999999888999999999999999
Q ss_pred CCcCcCCCCCCccccCCCCccccCCCCCCCCCCCC
Q 003084 734 YNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLP 768 (850)
Q Consensus 734 ~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~ 768 (850)
+|.+++..+..+..+..+..+.+++|||.|+|++.
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~ 145 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQ 145 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCeecCCcCH
Confidence 99999877777788899999999999999999764
No 122
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.66 E-value=3e-15 Score=161.04 Aligned_cols=265 Identities=13% Similarity=0.157 Sum_probs=146.6
Q ss_pred CCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEE
Q 003084 359 IFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLY 438 (850)
Q Consensus 359 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 438 (850)
..++.+.+.+ .++ .++...|.++ +|+.+.+..+ +..+...+|.++ +|+.+.+.+ .+..+.+.+|.+|++|+.++
T Consensus 113 ~~l~~i~ip~-~i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPN-SVK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCT-TCC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECC-ccC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 3344444433 233 4444444443 4555555443 444444445443 455555554 34444445566666666666
Q ss_pred CcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccc
Q 003084 439 LNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQ 518 (850)
Q Consensus 439 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~ 518 (850)
+.+|.++.+....|. +.+|+.+.+..+ +..+...+|.++++|+.+++..+ ++..
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I----------------------- 240 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTI----------------------- 240 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEE-----------------------
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCc-----------------------
Confidence 666666544444444 466666666533 54455566666667776666553 2222
Q ss_pred cCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCc-----cCCchhccCCCCCCEEeCCCCcCCccCC
Q 003084 519 LKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLE-----GEVPIQLCRLNQLQLLDLSDNNLHGLIP 593 (850)
Q Consensus 519 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 593 (850)
+..+|.+ .+|+.+.+. +.++.+...+|.+|++|+.+++.+|.+. .+.+.+|.+|++|+.+++. +.+..+..
T Consensus 241 -~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~ 316 (401)
T 4fdw_A 241 -GQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQ 316 (401)
T ss_dssp -CTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECT
T ss_pred -ccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhh
Confidence 2223433 344444442 2233333444555555555555444432 3445566666666666666 33555555
Q ss_pred CCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccc
Q 003084 594 SCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI 673 (850)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~ 673 (850)
.+|.++. +|+.++|..+ ++.+.+.+|
T Consensus 317 ~aF~~c~-----------------------------------------------------~L~~l~lp~~-l~~I~~~aF 342 (401)
T 4fdw_A 317 GLLGGNR-----------------------------------------------------KVTQLTIPAN-VTQINFSAF 342 (401)
T ss_dssp TTTTTCC-----------------------------------------------------SCCEEEECTT-CCEECTTSS
T ss_pred hhhcCCC-----------------------------------------------------CccEEEECcc-ccEEcHHhC
Confidence 5565544 5667777443 555566778
Q ss_pred cCCCCCCEEECcCCcCCccCcccCCCC-CCCCEEECcCCcCc
Q 003084 674 GNLTRIQTLNLSHNNLTGTIPLTFSNL-RHIESLDLSYNKLS 714 (850)
Q Consensus 674 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~ 714 (850)
.++ +|+.+++++|.+....+..|.++ ..++.|++..+.+.
T Consensus 343 ~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 343 NNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp SSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred CCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 888 88888888888776667777777 36778887776643
No 123
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=5e-16 Score=150.46 Aligned_cols=153 Identities=15% Similarity=0.260 Sum_probs=95.8
Q ss_pred CCCCCCCEEEcCCCCCcccchhhhhccCCCCcEEeCCCCcCCCcccCCcCCCCCcccEEecccCCcccccchhhHhhhcC
Q 003084 28 HNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESM 107 (850)
Q Consensus 28 ~~l~~L~~L~Ls~n~i~~~~~~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~l 107 (850)
+.+++|++|++++|.+... +.+.. +++|++|++++|.+.. ++ .+.++++|++|++ ++|.+.+..+..+.. +
T Consensus 41 ~~l~~L~~L~l~~n~i~~l--~~l~~-l~~L~~L~l~~n~~~~-~~--~l~~l~~L~~L~l--~~n~l~~~~~~~l~~-l 111 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDL--TGIEY-AHNIKDLTINNIHATN-YN--PISGLSNLERLRI--MGKDVTSDKIPNLSG-L 111 (197)
T ss_dssp HHHHTCCEEEEESSCCSCC--TTGGG-CTTCSEEEEESCCCSC-CG--GGTTCTTCCEEEE--ECTTCBGGGSCCCTT-C
T ss_pred hhcCCccEEeccCCCccCh--HHHhc-CCCCCEEEccCCCCCc-ch--hhhcCCCCCEEEe--ECCccCcccChhhcC-C
Confidence 4566667777777666633 25666 6677777777765542 22 4666677777777 666666555555655 6
Q ss_pred CCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCc-cccccCccccCCCCCCEEECCCCcCcCCCCcccccCCCC
Q 003084 108 PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNND-LRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTS 186 (850)
Q Consensus 108 ~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~ 186 (850)
++|++|++++|.+++ .. +..+..+++|++|++++|+ +. .++ .+.++++|++|++++|.++ .++ .+..+++
T Consensus 112 ~~L~~L~Ls~n~i~~---~~-~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~-~~~--~l~~l~~ 182 (197)
T 4ezg_A 112 TSLTLLDISHSAHDD---SI-LTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVH-DYR--GIEDFPK 182 (197)
T ss_dssp TTCCEEECCSSBCBG---GG-HHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCC-CCT--TGGGCSS
T ss_pred CCCCEEEecCCccCc---Hh-HHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCc-ChH--HhccCCC
Confidence 777777777776654 22 2356667777777777776 44 333 4677777777777777776 444 4677777
Q ss_pred CCeEECcCCcCc
Q 003084 187 IEELRLSNNHFR 198 (850)
Q Consensus 187 L~~L~L~~n~~~ 198 (850)
|++|++++|++.
T Consensus 183 L~~L~l~~N~i~ 194 (197)
T 4ezg_A 183 LNQLYAFSQTIG 194 (197)
T ss_dssp CCEEEECBC---
T ss_pred CCEEEeeCcccC
Confidence 777777777654
No 124
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.64 E-value=5.5e-15 Score=160.14 Aligned_cols=332 Identities=14% Similarity=0.164 Sum_probs=178.9
Q ss_pred CchhhhhcCCCCcEEEccCCcCcCcCccCcCCCCCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCccccc
Q 003084 277 FPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFG 356 (850)
Q Consensus 277 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 356 (850)
+....|.+|++|+.+.+.. .++.....+|.+|++|+.+++..+ ++ .++..+|..+++|+.+.+..+ +......+|.
T Consensus 62 Ig~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~ 137 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFK 137 (394)
T ss_dssp ECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred hHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeee
Confidence 3344456666677766653 355555566667777777777544 33 555666666666666555433 3334444555
Q ss_pred CCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcE
Q 003084 357 NVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKG 436 (850)
Q Consensus 357 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 436 (850)
++..++..... .+. .+....|.+|.+|+.+.+.++. .......|.++.+|+.+.+..+ +......+|.++..|+.
T Consensus 138 ~~~~~~~~~~~--~~~-~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~ 212 (394)
T 4fs7_A 138 GCDFKEITIPE--GVT-VIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLEN 212 (394)
T ss_dssp TCCCSEEECCT--TCC-EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCB
T ss_pred cccccccccCc--ccc-ccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccce
Confidence 55433222221 222 4555556666667766665442 3344555666666666666554 33344455666666666
Q ss_pred EECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccc
Q 003084 437 LYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLH 516 (850)
Q Consensus 437 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~ 516 (850)
+.+..+... +........+|+.+.+... ++.+....|..+..++.+.+..+..
T Consensus 213 i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~------------------------ 265 (394)
T 4fs7_A 213 MEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL------------------------ 265 (394)
T ss_dssp CCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC------------------------
T ss_pred eecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc------------------------
Confidence 665544321 1222333455666655433 2223344555666666666554422
Q ss_pred cccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCc
Q 003084 517 GQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 596 (850)
Q Consensus 517 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 596 (850)
.+....|..+..++.+....+.+. ...|.++.+|+.+.+.++ ++.+...+|.++++|+.+++.++ ++.+...+|
T Consensus 266 -~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF 339 (394)
T 4fs7_A 266 -RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSF 339 (394)
T ss_dssp -EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTT
T ss_pred -eeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhc
Confidence 222335556666666555544322 234556666666666543 44344555666666666666533 555555555
Q ss_pred ccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCC
Q 003084 597 DNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNL 676 (850)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 676 (850)
.++. +|+++++..+ ++.+...+|.++
T Consensus 340 ~~c~-----------------------------------------------------~L~~i~lp~~-l~~I~~~aF~~C 365 (394)
T 4fs7_A 340 RGCT-----------------------------------------------------SLSNINFPLS-LRKIGANAFQGC 365 (394)
T ss_dssp TTCT-----------------------------------------------------TCCEECCCTT-CCEECTTTBTTC
T ss_pred cCCC-----------------------------------------------------CCCEEEECcc-ccEehHHHhhCC
Confidence 5544 5666666554 544555667777
Q ss_pred CCCCEEECcCCcCCccCcccCCCCCCCCEE
Q 003084 677 TRIQTLNLSHNNLTGTIPLTFSNLRHIESL 706 (850)
Q Consensus 677 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 706 (850)
++|+.+++..+ ++ .+..+|.++++|+.+
T Consensus 366 ~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 366 INLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 77777777654 23 234567777766654
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=9.7e-19 Score=197.04 Aligned_cols=77 Identities=23% Similarity=0.216 Sum_probs=49.0
Q ss_pred cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccC-cccCCCCCCCCEEECcCCcCcccCCh---hhhcCCCCCE
Q 003084 654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTI-PLTFSNLRHIESLDLSYNKLSGKIPR---QLVDLNTLAI 729 (850)
Q Consensus 654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~ 729 (850)
+|+.|+|++|++++ +| .++.+++|+.|+|++|++++.. |..++.+++|+.|+|++|++++.+|. .+..+++|+.
T Consensus 487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~ 564 (567)
T 1dce_A 487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564 (567)
T ss_dssp TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence 45555555555554 44 5666777777777777777665 66777777777777777777655442 2334677777
Q ss_pred EEc
Q 003084 730 FIV 732 (850)
Q Consensus 730 L~l 732 (850)
|++
T Consensus 565 L~l 567 (567)
T 1dce_A 565 ILT 567 (567)
T ss_dssp EEC
T ss_pred cCC
Confidence 753
No 126
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=4.2e-16 Score=158.25 Aligned_cols=169 Identities=18% Similarity=0.222 Sum_probs=104.0
Q ss_pred CCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccC
Q 003084 410 LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD 489 (850)
Q Consensus 410 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~ 489 (850)
+..++++++.+.+.. .+..+++|+.|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|+.|++++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 334444444443221 23444455555555554442 22 34445555555555555544332 45555555555555
Q ss_pred CcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCc
Q 003084 490 NNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP 569 (850)
Q Consensus 490 n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 569 (850)
|++++.. .... ++|+.|++++|.+++. + .+..+++|+.|++++|++++. + .+..+++|+.|++++|++++.
T Consensus 95 N~l~~l~-~~~~-~~L~~L~L~~N~l~~~-~--~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 95 NRLKNLN-GIPS-ACLSRLFLDNNELRDT-D--SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp SCCSCCT-TCCC-SSCCEEECCSSCCSBS-G--GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--
T ss_pred CccCCcC-cccc-CcccEEEccCCccCCC-h--hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--
Confidence 5554322 2222 5566666666665442 2 578889999999999999865 3 688899999999999999866
Q ss_pred hhccCCCCCCEEeCCCCcCCccCC
Q 003084 570 IQLCRLNQLQLLDLSDNNLHGLIP 593 (850)
Q Consensus 570 ~~l~~l~~L~~L~Ls~n~l~~~~~ 593 (850)
..+..+++|+.|++++|++...+.
T Consensus 166 ~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred HHhccCCCCCEEeCCCCcccCCcc
Confidence 678889999999999999876643
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=3.4e-18 Score=192.58 Aligned_cols=88 Identities=28% Similarity=0.384 Sum_probs=73.8
Q ss_pred ccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccC-ChhhhcCCCCCEEE
Q 003084 653 SLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI-PRQLVDLNTLAIFI 731 (850)
Q Consensus 653 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ 731 (850)
++|+.|+|++|.++ .+|..|+++++|+.|+|++|++++ +| .++.+++|+.|+|++|++++.. |..+..+++|+.|+
T Consensus 463 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~ 539 (567)
T 1dce_A 463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 539 (567)
T ss_dssp TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEE
Confidence 37888888888888 678888888888888888888886 56 7888888888888888888776 88888888888888
Q ss_pred ccCCcCcCCCCC
Q 003084 732 VAYNNLSGKIPE 743 (850)
Q Consensus 732 l~~N~l~~~~p~ 743 (850)
+++|++++.+|.
T Consensus 540 L~~N~l~~~~~~ 551 (567)
T 1dce_A 540 LQGNSLCQEEGI 551 (567)
T ss_dssp CTTSGGGGSSSC
T ss_pred ecCCcCCCCccH
Confidence 888888877665
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=2.6e-15 Score=141.41 Aligned_cols=86 Identities=23% Similarity=0.193 Sum_probs=58.7
Q ss_pred cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccC-cccCCCCCCCCEEECcCCcCcccCC---hhhhcCCCCCE
Q 003084 654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTI-PLTFSNLRHIESLDLSYNKLSGKIP---RQLVDLNTLAI 729 (850)
Q Consensus 654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~ 729 (850)
+|++|++++|++++.+|..+..+++|+.|++++|.+++.. +..+..+++|+.|++++|++++..+ ..+..+++|+.
T Consensus 72 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 151 (168)
T 2ell_A 72 KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY 151 (168)
T ss_dssp SCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCE
T ss_pred CCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcE
Confidence 5666666666666556666666777777777777776542 2567777777777777777775544 46777777777
Q ss_pred EEccCCcCcC
Q 003084 730 FIVAYNNLSG 739 (850)
Q Consensus 730 L~l~~N~l~~ 739 (850)
|++++|.+..
T Consensus 152 L~l~~n~~~~ 161 (168)
T 2ell_A 152 LDGYDREDQE 161 (168)
T ss_dssp ETTEETTSCB
T ss_pred ecCCCCChhh
Confidence 7777777653
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=6.5e-15 Score=141.57 Aligned_cols=89 Identities=29% Similarity=0.305 Sum_probs=74.3
Q ss_pred cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcc
Q 003084 654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 733 (850)
Q Consensus 654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 733 (850)
+|++|+|++|++++..+..|.++++|++|+|++|++++..|..|..+++|+.|+|++|+++...+..|..+++|+.|+++
T Consensus 55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence 67777777777777777778888888888888888888888888888899999999999887666778889999999999
Q ss_pred CCcCcCCCC
Q 003084 734 YNNLSGKIP 742 (850)
Q Consensus 734 ~N~l~~~~p 742 (850)
+|++.|.+.
T Consensus 135 ~N~~~C~c~ 143 (193)
T 2wfh_A 135 ANPLYCDCN 143 (193)
T ss_dssp SSCEECSGG
T ss_pred CCCeecCCc
Confidence 999987655
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=8.2e-15 Score=139.24 Aligned_cols=90 Identities=23% Similarity=0.250 Sum_probs=70.1
Q ss_pred cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcc
Q 003084 654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 733 (850)
Q Consensus 654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 733 (850)
+|++|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|++++..+..+..+++|+.|+++
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence 67777777777776666667788888888888888887777777888888888888888886666667778888888888
Q ss_pred CCcCcCCCCC
Q 003084 734 YNNLSGKIPE 743 (850)
Q Consensus 734 ~N~l~~~~p~ 743 (850)
+|++.|.+|.
T Consensus 133 ~N~~~~~~~~ 142 (177)
T 2o6r_A 133 TNPWDCSCPR 142 (177)
T ss_dssp SSCBCCCHHH
T ss_pred CCCeeccCcc
Confidence 8888877763
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=2.3e-15 Score=141.77 Aligned_cols=138 Identities=25% Similarity=0.255 Sum_probs=105.8
Q ss_pred CCCCCcEEECcCCcCC-CCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccc
Q 003084 526 NCSSLVTLDLSYNYLN-GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHES 604 (850)
Q Consensus 526 ~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~ 604 (850)
..++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++.+|..+..
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------ 93 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK------ 93 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH------
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh------
Confidence 3467888888888887 56677777888888888888888755 66778888888888888887655544433
Q ss_pred cCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCC-CccccCCCCCCEEE
Q 003084 605 YNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHI-PPQIGNLTRIQTLN 683 (850)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~ 683 (850)
+++|++|++++|++++.. +..+..+++|+.|+
T Consensus 94 -----------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~ 126 (168)
T 2ell_A 94 -----------------------------------------------LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD 126 (168)
T ss_dssp -----------------------------------------------CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEE
T ss_pred -----------------------------------------------CCCCCEEeccCCccCcchhHHHHhcCCCCCEEE
Confidence 337888888888888542 26788889999999
Q ss_pred CcCCcCCccCc---ccCCCCCCCCEEECcCCcCcccCCh
Q 003084 684 LSHNNLTGTIP---LTFSNLRHIESLDLSYNKLSGKIPR 719 (850)
Q Consensus 684 Ls~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~p~ 719 (850)
+++|.+++..+ ..+..+++|+.|++++|.+. .+|+
T Consensus 127 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 127 LFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp CCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred eeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 99999986655 47888999999999999887 4444
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=3.3e-15 Score=137.51 Aligned_cols=81 Identities=22% Similarity=0.199 Sum_probs=61.2
Q ss_pred cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCcc-CcccCCCCCCCCEEECcCCcCcccCC---hhhhcCCCCCE
Q 003084 654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGT-IPLTFSNLRHIESLDLSYNKLSGKIP---RQLVDLNTLAI 729 (850)
Q Consensus 654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~ 729 (850)
+|++|++++|.+++.+|..+..+++|++|++++|.+++. .+..++.+++|+.|++++|++++..+ ..+..+++|+.
T Consensus 65 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 144 (149)
T 2je0_A 65 KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY 144 (149)
T ss_dssp TCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCE
T ss_pred CCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccc
Confidence 677777777777766677777788888888888888753 34677888888888888888886655 57788888888
Q ss_pred EEccC
Q 003084 730 FIVAY 734 (850)
Q Consensus 730 L~l~~ 734 (850)
|++++
T Consensus 145 L~l~d 149 (149)
T 2je0_A 145 LDGYD 149 (149)
T ss_dssp ETTBC
T ss_pred ccCCC
Confidence 87753
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=1.3e-14 Score=137.80 Aligned_cols=113 Identities=24% Similarity=0.270 Sum_probs=104.5
Q ss_pred cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcc
Q 003084 654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 733 (850)
Q Consensus 654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 733 (850)
+|++|++++|++++..+..|..+++|++|++++|++++..+..|+.+++|+.|++++|++++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 79999999999998777788999999999999999998888889999999999999999998888889999999999999
Q ss_pred CCcCcCCCCCCccccCCCCccccCCCCCCCCCC
Q 003084 734 YNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLP 766 (850)
Q Consensus 734 ~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~ 766 (850)
+|.+++..+..+..+..+..+.+++||+.|+|+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999997777666788899999999999999886
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.56 E-value=7.4e-16 Score=179.35 Aligned_cols=122 Identities=25% Similarity=0.224 Sum_probs=82.9
Q ss_pred cchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCC
Q 003084 472 IPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGL 551 (850)
Q Consensus 472 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 551 (850)
.+..+..++.|+.|++++|.+....+..+.+++|+.|+|++|.++ .+|. .+..+++|+.|+|++|+++ .+|..|.++
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPA-EIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCG-GGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccCh-hhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 445555666666666666666533333344555555555555554 4554 6778888888888888888 567788888
Q ss_pred CCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcc
Q 003084 552 SQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFD 597 (850)
Q Consensus 552 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 597 (850)
++|++|+|++|.++ .+|..|..+++|+.|+|++|++++.+|..+.
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 337 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILT 337 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence 88888888888887 5676788888888888888888877665553
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.56 E-value=1.2e-15 Score=177.61 Aligned_cols=191 Identities=19% Similarity=0.197 Sum_probs=105.7
Q ss_pred CCCCEEeccCCcCCCCCCCCcCCCccc-----EEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCC
Q 003084 480 DSLQILDISDNNISGSLPSCFYPLSIK-----QVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQL 554 (850)
Q Consensus 480 ~~L~~L~ls~n~l~~~~~~~~~~~~L~-----~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 554 (850)
+.++.|++.+|.+.......+....|+ .+++..|.+. ++...+..++.|+.|+|++|.+. .+|..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 567888888888775433322222222 2233333332 33446778888888888888887 455556688888
Q ss_pred CEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhh
Q 003084 555 SHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILE 634 (850)
Q Consensus 555 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (850)
++|+|++|.++ .+|..+..+++|+.|+|++|.++ .+|..|..+
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l----------------------------------- 292 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC----------------------------------- 292 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG-----------------------------------
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC-----------------------------------
Confidence 88888888888 67777888888888888888887 446655543
Q ss_pred hhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCC-CCEEECcCCcC
Q 003084 635 IFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRH-IESLDLSYNKL 713 (850)
Q Consensus 635 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l 713 (850)
++|++|+|++|.++ .+|..|+.+++|+.|+|++|.+++.+|..+..+.. +..++|++|.+
T Consensus 293 ------------------~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l 353 (727)
T 4b8c_D 293 ------------------FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRP 353 (727)
T ss_dssp ------------------TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred ------------------CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcc
Confidence 37888888888887 66777888888888888888888887777655322 22477888888
Q ss_pred cccCChhhhcCCCCCEEEccCC
Q 003084 714 SGKIPRQLVDLNTLAIFIVAYN 735 (850)
Q Consensus 714 ~~~~p~~l~~l~~L~~L~l~~N 735 (850)
++.+|.. |+.|+++.|
T Consensus 354 ~~~~p~~------l~~l~l~~n 369 (727)
T 4b8c_D 354 EIPLPHE------RRFIEINTD 369 (727)
T ss_dssp CCCCCCC---------------
T ss_pred cCcCccc------cceeEeecc
Confidence 8777754 455566665
No 136
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=4.9e-15 Score=136.33 Aligned_cols=128 Identities=26% Similarity=0.292 Sum_probs=86.7
Q ss_pred CCCcEEECcCCcCC-CCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccC
Q 003084 528 SSLVTLDLSYNYLN-GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYN 606 (850)
Q Consensus 528 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~ 606 (850)
++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++.+|..+..
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-------- 86 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK-------- 86 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH--------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh--------
Confidence 56677777777776 45566666777777777777777654 55666777777777777776544433322
Q ss_pred CCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccC-CCccccCCCCCCEEECc
Q 003084 607 NNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGH-IPPQIGNLTRIQTLNLS 685 (850)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls 685 (850)
+++|++|++++|++++. .+..+..+++|++|+++
T Consensus 87 ---------------------------------------------l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~ 121 (149)
T 2je0_A 87 ---------------------------------------------CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLF 121 (149)
T ss_dssp ---------------------------------------------CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECT
T ss_pred ---------------------------------------------CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCc
Confidence 23677777777777653 23667778888888888
Q ss_pred CCcCCccCc---ccCCCCCCCCEEECcC
Q 003084 686 HNNLTGTIP---LTFSNLRHIESLDLSY 710 (850)
Q Consensus 686 ~N~l~~~~~---~~~~~l~~L~~L~Ls~ 710 (850)
+|.+++..+ ..+..+++|+.||+++
T Consensus 122 ~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 122 NCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCcccchHHHHHHHHHHCCCcccccCCC
Confidence 888876655 4677788888887763
No 137
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.51 E-value=1.3e-12 Score=141.49 Aligned_cols=309 Identities=13% Similarity=0.110 Sum_probs=138.2
Q ss_pred cCcccccCCCCCCEEEccCCc---CCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCc
Q 003084 350 SIPSSFGNVIFLQFLDLSNNK---LTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQ 426 (850)
Q Consensus 350 ~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 426 (850)
+...+|.++.+|+.+.+..|. ++ .++..+|.+|.+|+.+.+..+ +......+|.++.+|+.+.+..+ +......
T Consensus 78 Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~ 154 (394)
T 4gt6_A 78 IGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADG 154 (394)
T ss_dssp ECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred EhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeeccc
Confidence 333444444444444444331 33 344444444555554444332 23333444555555555555432 2223334
Q ss_pred CCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCccc
Q 003084 427 SLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIK 506 (850)
Q Consensus 427 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~ 506 (850)
.|..+.+|+.+.+..+ ++.+...+|. ...|+.+.+..+-. .....+|.++.+++................+......
T Consensus 155 ~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~ 231 (394)
T 4gt6_A 155 MFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVT-RIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANG 231 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTS
T ss_pred ceecccccccccccce-eeEecccccc-ccceeEEEECCccc-ccccchhhhccccceecccccccccccceeecccccc
Confidence 4555555555555443 2223333333 24455555544322 2334455556666655544433221110000000000
Q ss_pred EEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCC
Q 003084 507 QVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDN 586 (850)
Q Consensus 507 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 586 (850)
. .....+.....+..+.+.. .++.+...+|.++..|+.+.+.++... +...+|.++++|+.+.+. +
T Consensus 232 ~-----------~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~ 297 (394)
T 4gt6_A 232 D-----------YALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-S 297 (394)
T ss_dssp C-----------EEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-T
T ss_pred c-----------ccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCcccccccccccccCC-C
Confidence 0 0000111222333333332 122233345555666666665544332 444555566666666664 3
Q ss_pred cCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccc
Q 003084 587 NLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLV 666 (850)
Q Consensus 587 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 666 (850)
.+..+...+|.++. +|+++++..+ ++
T Consensus 298 ~i~~I~~~aF~~c~-----------------------------------------------------~L~~i~lp~~-v~ 323 (394)
T 4gt6_A 298 RITELPESVFAGCI-----------------------------------------------------SLKSIDIPEG-IT 323 (394)
T ss_dssp TCCEECTTTTTTCT-----------------------------------------------------TCCEEECCTT-CC
T ss_pred cccccCceeecCCC-----------------------------------------------------CcCEEEeCCc-cc
Confidence 34444444554433 5666666543 44
Q ss_pred cCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCc
Q 003084 667 GHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNN 736 (850)
Q Consensus 667 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~ 736 (850)
.+...+|.++++|+.+.|..+ ++.+...+|.++++|+.+++.++... ..++.....|+.+.+..|.
T Consensus 324 ~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 324 QILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp EECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC---------
T ss_pred EehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCC
Confidence 344556777777777777543 55555667777777777777766543 1345556666666655543
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=6.7e-14 Score=132.67 Aligned_cols=83 Identities=14% Similarity=0.143 Sum_probs=56.8
Q ss_pred cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcc--cCCCCCCCCEEECcCCcCcccCCh----hhhcCCCC
Q 003084 654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPL--TFSNLRHIESLDLSYNKLSGKIPR----QLVDLNTL 727 (850)
Q Consensus 654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L 727 (850)
+|++|++++|++++..+..|..+++|+.|++++|+++ .+|. .+..+++|+.|++++|+++ .+|. .+..+++|
T Consensus 65 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L 142 (176)
T 1a9n_A 65 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQV 142 (176)
T ss_dssp SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTC
T ss_pred CCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCcc
Confidence 5666666666666554444567777777777777775 3444 6777777777777777776 3454 37777888
Q ss_pred CEEEccCCcCc
Q 003084 728 AIFIVAYNNLS 738 (850)
Q Consensus 728 ~~L~l~~N~l~ 738 (850)
+.||+++|...
T Consensus 143 ~~Ld~~~n~~~ 153 (176)
T 1a9n_A 143 RVLDFQKVKLK 153 (176)
T ss_dssp SEETTEECCHH
T ss_pred ceeCCCcCCHH
Confidence 88888777654
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=1.1e-13 Score=129.86 Aligned_cols=110 Identities=24% Similarity=0.252 Sum_probs=83.8
Q ss_pred cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcc
Q 003084 654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 733 (850)
Q Consensus 654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 733 (850)
..+++++++|+++ .+|..+. ++|+.|+|++|+|++..|..|..+++|+.|+|++|++++..|..|..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4567888888877 4565553 678888888888887777778888888888888888887666677788888888888
Q ss_pred CCcCcCCCCCCccccCCCCccccCCCCCCCCCC
Q 003084 734 YNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLP 766 (850)
Q Consensus 734 ~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~ 766 (850)
+|++++..+..+..+..+..+.+++||+.|+|+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 888887666666777777778888888888775
No 140
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.49 E-value=2.8e-12 Score=138.81 Aligned_cols=136 Identities=10% Similarity=0.173 Sum_probs=92.3
Q ss_pred cCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCccc
Q 003084 519 LKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 598 (850)
Q Consensus 519 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 598 (850)
+...+|.++..|+.+.+..+... +...+|.++++|+.+.+. +.++.+...+|.++.+|+.+++..+ ++.+...+|.+
T Consensus 256 i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~ 332 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG 332 (394)
T ss_dssp ECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred cccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence 34447888888888888765433 556778888888888886 4455566678888888888888754 66666667766
Q ss_pred CccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCC
Q 003084 599 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTR 678 (850)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 678 (850)
+. +|+++.+..+ ++.+...+|.++++
T Consensus 333 C~-----------------------------------------------------~L~~i~ip~s-v~~I~~~aF~~C~~ 358 (394)
T 4gt6_A 333 CE-----------------------------------------------------QLERIAIPSS-VTKIPESAFSNCTA 358 (394)
T ss_dssp CT-----------------------------------------------------TCCEEEECTT-CCBCCGGGGTTCTT
T ss_pred CC-----------------------------------------------------CCCEEEECcc-cCEEhHhHhhCCCC
Confidence 55 7888888654 66566678999999
Q ss_pred CCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCc
Q 003084 679 IQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 714 (850)
Q Consensus 679 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 714 (850)
|+.+++.++... ...+....+|+.+.+..|.+.
T Consensus 359 L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 359 LNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp CCEEEESSCHHH---HHTCBCCCCC-----------
T ss_pred CCEEEECCceee---hhhhhccCCCCEEEeCCCCEE
Confidence 999999888654 246777888988888777653
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=5.6e-14 Score=133.19 Aligned_cols=135 Identities=19% Similarity=0.176 Sum_probs=109.1
Q ss_pred ccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccc
Q 003084 523 TFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLH 602 (850)
Q Consensus 523 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 602 (850)
.+..+++|+.|++++|.++.. +......++|+.|++++|.+++. ..+..+++|++|++++|.+++.++..|..+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l--- 87 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQAL--- 87 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHC---
T ss_pred hcCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcC---
Confidence 466788999999999999854 54333344999999999999865 578889999999999999987765554443
Q ss_pred cccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCc--cccCCCCCC
Q 003084 603 ESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPP--QIGNLTRIQ 680 (850)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~ 680 (850)
++|++|++++|+++ .+|. .+..+++|+
T Consensus 88 --------------------------------------------------~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~ 116 (176)
T 1a9n_A 88 --------------------------------------------------PDLTELILTNNSLV-ELGDLDPLASLKSLT 116 (176)
T ss_dssp --------------------------------------------------TTCCEEECCSCCCC-CGGGGGGGGGCTTCC
T ss_pred --------------------------------------------------CCCCEEECCCCcCC-cchhhHhhhcCCCCC
Confidence 38999999999997 4555 788999999
Q ss_pred EEECcCCcCCccCcc----cCCCCCCCCEEECcCCcCcc
Q 003084 681 TLNLSHNNLTGTIPL----TFSNLRHIESLDLSYNKLSG 715 (850)
Q Consensus 681 ~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~ 715 (850)
.|++++|.++. .|. .+..+++|+.||+++|.+..
T Consensus 117 ~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 117 YLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 99999999984 455 48889999999999998763
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=3.4e-13 Score=126.64 Aligned_cols=90 Identities=22% Similarity=0.228 Sum_probs=84.9
Q ss_pred cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcc
Q 003084 654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 733 (850)
Q Consensus 654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 733 (850)
.|++|+|++|++++..|..|.++++|+.|+|++|+|++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+++
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence 79999999999998889999999999999999999998888889999999999999999998877889999999999999
Q ss_pred CCcCcCCCCC
Q 003084 734 YNNLSGKIPE 743 (850)
Q Consensus 734 ~N~l~~~~p~ 743 (850)
+|+++|.++.
T Consensus 111 ~N~~~c~c~~ 120 (170)
T 3g39_A 111 NNPWDCACSD 120 (170)
T ss_dssp SSCBCTTBGG
T ss_pred CCCCCCCchh
Confidence 9999988764
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=3.9e-13 Score=126.58 Aligned_cols=108 Identities=21% Similarity=0.236 Sum_probs=73.9
Q ss_pred CeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCC
Q 003084 656 AGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN 735 (850)
Q Consensus 656 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N 735 (850)
+.+++++|+++ .+|..+. ++|+.|+|++|++++..|..|+.+++|+.|+|++|++++..+..|..+++|+.|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56777777775 4555443 66777777777777666777777777777777777777655555667777777777777
Q ss_pred cCcCCCCCCccccCCCCccccCCCCCCCCCC
Q 003084 736 NLSGKIPEWTAQFATFNKSSYDGNPFLCGLP 766 (850)
Q Consensus 736 ~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~ 766 (850)
++++..+..+..+..+..+.+.+||+.|.|+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 7776555556666677777777777777664
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=1.6e-15 Score=147.02 Aligned_cols=154 Identities=23% Similarity=0.275 Sum_probs=114.5
Q ss_pred CCCCCCcEEECcCCcCCCCcCc------cccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCccc
Q 003084 525 FNCSSLVTLDLSYNYLNGSIPD------WIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 598 (850)
Q Consensus 525 ~~~~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 598 (850)
...+.++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|+.|++++|.++.. |..+..
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l-~~~~~~ 91 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKI-ENLDAV 91 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSC-SSHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccc-cchhhc
Confidence 3344556666666666655554 78888899999999998885 55 778888899999998887643 222211
Q ss_pred CccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCC
Q 003084 599 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTR 678 (850)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 678 (850)
+++|++|++++|++++ +| .+..+++
T Consensus 92 -----------------------------------------------------~~~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 92 -----------------------------------------------------ADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp -----------------------------------------------------HHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred -----------------------------------------------------CCcCCEEECcCCcCCc-CC-ccccCCC
Confidence 3478999999998885 34 6888889
Q ss_pred CCEEECcCCcCCccCc-ccCCCCCCCCEEECcCCcCcccCChh----------hhcCCCCCEEEccCCcCc
Q 003084 679 IQTLNLSHNNLTGTIP-LTFSNLRHIESLDLSYNKLSGKIPRQ----------LVDLNTLAIFIVAYNNLS 738 (850)
Q Consensus 679 L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~l~~N~l~ 738 (850)
|+.|++++|++++..+ ..+..+++|+.|++++|++++.+|.. +..+++|+.|| +|+++
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 9999999999885433 47888899999999999988766543 77888888886 66665
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=1.1e-12 Score=123.43 Aligned_cols=90 Identities=22% Similarity=0.236 Sum_probs=83.7
Q ss_pred cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcc
Q 003084 654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 733 (850)
Q Consensus 654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 733 (850)
.|++|+|++|++++..|..|.++++|+.|+|++|+|++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+++
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence 79999999999999889999999999999999999998877788999999999999999997777779999999999999
Q ss_pred CCcCcCCCCC
Q 003084 734 YNNLSGKIPE 743 (850)
Q Consensus 734 ~N~l~~~~p~ 743 (850)
+|++.+.++.
T Consensus 114 ~N~~~c~~~~ 123 (174)
T 2r9u_A 114 NNPWDCECRD 123 (174)
T ss_dssp SSCBCTTBGG
T ss_pred CCCccccccc
Confidence 9999987653
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.32 E-value=1.2e-14 Score=140.90 Aligned_cols=138 Identities=22% Similarity=0.266 Sum_probs=116.1
Q ss_pred ccCCCCCCEEECcCCcCccCCch------hccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccc
Q 003084 548 IDGLSQLSHLNLAHNNLEGEVPI------QLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSI 621 (850)
Q Consensus 548 ~~~l~~L~~L~L~~n~l~~~~~~------~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (850)
+.....++.++++.+.+.+..|. .+..+++|++|++++|.+++. | .+..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l-~-~~~~----------------------- 68 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-S-SLSG----------------------- 68 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCC-C-CHHH-----------------------
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccc-c-cccc-----------------------
Confidence 44566777888888888777665 899999999999999999873 3 4433
Q ss_pred cCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCC
Q 003084 622 SGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLR 701 (850)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 701 (850)
+++|++|++++|.++ .+|..+..+++|+.|++++|++++ +| .+..++
T Consensus 69 ------------------------------l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~ 115 (198)
T 1ds9_A 69 ------------------------------MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLV 115 (198)
T ss_dssp ------------------------------HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHH
T ss_pred ------------------------------CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCC
Confidence 458999999999999 678788888999999999999996 45 688899
Q ss_pred CCCEEECcCCcCcccCC-hhhhcCCCCCEEEccCCcCcCCCCC
Q 003084 702 HIESLDLSYNKLSGKIP-RQLVDLNTLAIFIVAYNNLSGKIPE 743 (850)
Q Consensus 702 ~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~l~~N~l~~~~p~ 743 (850)
+|+.|++++|++++..+ ..+..+++|++|++++|++++.+|.
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 99999999999986443 5789999999999999999887765
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.28 E-value=5.6e-12 Score=134.14 Aligned_cols=112 Identities=17% Similarity=0.214 Sum_probs=88.9
Q ss_pred cCCeEEccC-CccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEc
Q 003084 654 LLAGLDLSC-NKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIV 732 (850)
Q Consensus 654 ~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 732 (850)
+|++|+|++ |.+++..+..|.++++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..+..++ |+.|++
T Consensus 32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l 110 (347)
T 2ifg_A 32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVL 110 (347)
T ss_dssp CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEEC
T ss_pred CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEe
Confidence 799999996 999988888899999999999999999998888999999999999999999977777777666 999999
Q ss_pred cCCcCcCCCCC-CccccCCCCccccCCCCCCCCCC
Q 003084 733 AYNNLSGKIPE-WTAQFATFNKSSYDGNPFLCGLP 766 (850)
Q Consensus 733 ~~N~l~~~~p~-~~~~~~~~~~~~~~~n~~~c~~~ 766 (850)
.+|++.+.+.. ++..+.......+..+.+.|..|
T Consensus 111 ~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~ 145 (347)
T 2ifg_A 111 SGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQ 145 (347)
T ss_dssp CSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSS
T ss_pred eCCCccCCCccHHHHHHHHhCcccccccCCCCCCC
Confidence 99999876652 22222222333445567777654
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.27 E-value=9.8e-12 Score=132.26 Aligned_cols=109 Identities=16% Similarity=0.219 Sum_probs=98.5
Q ss_pred CeEEccCC-ccccCCCccccCCCCCCEEECcC-CcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcc
Q 003084 656 AGLDLSCN-KLVGHIPPQIGNLTRIQTLNLSH-NNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 733 (850)
Q Consensus 656 ~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 733 (850)
..++.+++ +++ .+|. +..+++|+.|+|++ |.+++..+..|+.+++|+.|+|++|+|++..|..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 46799998 898 5787 99999999999996 99999888999999999999999999999999999999999999999
Q ss_pred CCcCcCCCCCCccccCCCCccccCCCCCCCCCCC
Q 003084 734 YNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPL 767 (850)
Q Consensus 734 ~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l 767 (850)
+|+|++.++..+..+. +..+.+.+|++.|+|++
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l 121 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCAL 121 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGG
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCCCcc
Confidence 9999987777655554 88899999999999974
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.27 E-value=3.4e-10 Score=121.91 Aligned_cols=311 Identities=9% Similarity=0.048 Sum_probs=141.2
Q ss_pred CCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCCCCEEEccCCccCccccccccCCCCCCee
Q 003084 334 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWL 413 (850)
Q Consensus 334 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 413 (850)
..+|+.+.+.. .++.+...+|.++.+|+.+.+..+ ++ .++..+|.++ +|+.+.+..+ +......+|... +|+.+
T Consensus 45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i 118 (379)
T 4h09_A 45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDF 118 (379)
T ss_dssp GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEE
T ss_pred ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceeccC-Ccccc
Confidence 45677777654 344455666777777777777643 55 6666666655 5666655433 333333344432 56666
Q ss_pred eccCCcCcccCCcCCCCCCCCcEEECcCCCCCCCCcccccCCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCC
Q 003084 414 LLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS 493 (850)
Q Consensus 414 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~ 493 (850)
.+.++- .......|.++ +++.+.+..+ ++......+..+..++.+.+..+.........+. .......
T Consensus 119 ~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~-------- 186 (379)
T 4h09_A 119 EFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL-YNKNKTI-------- 186 (379)
T ss_dssp ECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE-EETTSSE--------
T ss_pred cCCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeeccccee-cccccce--------
Confidence 655432 21223334333 3444444322 2223333444455555444433221100000000 0000000
Q ss_pred CCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhcc
Q 003084 494 GSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC 573 (850)
Q Consensus 494 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 573 (850)
.........+..+.+..... .+....+..+.+|+.+.+..+ +..+....|.++..|+.+.+..+ ++.+...+|.
T Consensus 187 --~~~~~~~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~ 260 (379)
T 4h09_A 187 --LESYPAAKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQ 260 (379)
T ss_dssp --EEECCTTCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTT
T ss_pred --ecccccccccccccccccee--EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccc
Confidence 00000011222222221111 122224555555665555443 22233445555666666665544 3334445555
Q ss_pred CCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhc
Q 003084 574 RLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLS 653 (850)
Q Consensus 574 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 653 (850)
++.+|+.+.+..+ +..+...+|..+.
T Consensus 261 ~~~~l~~i~l~~~-i~~i~~~aF~~c~----------------------------------------------------- 286 (379)
T 4h09_A 261 NCTALKTLNFYAK-VKTVPYLLCSGCS----------------------------------------------------- 286 (379)
T ss_dssp TCTTCCEEEECCC-CSEECTTTTTTCT-----------------------------------------------------
T ss_pred eeehhcccccccc-ceecccccccccc-----------------------------------------------------
Confidence 5566666555432 3333333443332
Q ss_pred cCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCcccCChhhhcC
Q 003084 654 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL 724 (850)
Q Consensus 654 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 724 (850)
+|+.+++.++.++.+...+|.++++|+.+.|..+ ++.+...+|.++++|+.+.+..+ ++.+...+|.+.
T Consensus 287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 5555555555555444555666666666666533 44444555666666666555433 443444444443
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.26 E-value=5.5e-10 Score=120.23 Aligned_cols=305 Identities=12% Similarity=0.110 Sum_probs=205.2
Q ss_pred cCCCCCccEEEccCCcCCcCCChhhhhcCCCCcEEEccCCcCcccCcccccCCCCCCEEEccCCcCCCCcchHHhhcCCC
Q 003084 306 IHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVN 385 (850)
Q Consensus 306 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 385 (850)
+....+|+.+.+... ++ .++..+|..+.+|+.+.+..+ ++.+...+|.++ +|+.+.+..+ +. .++..+|.++ +
T Consensus 42 ~~~~~~i~~v~ip~~-vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~-~ 114 (379)
T 4h09_A 42 YKDRDRISEVRVNSG-IT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGT-D 114 (379)
T ss_dssp GGGGGGCSEEEECTT-EE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTC-C
T ss_pred cccccCCEEEEeCCC-cc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-EeccceeccC-C
Confidence 456678999999754 55 788888998999999999755 666777788887 6888887654 55 7888888755 8
Q ss_pred CCEEEccCCccCccccccccCCCCCCeeeccCCcCcccCCcCCCCCCCCcEEECcCCCCCCC------------Cccccc
Q 003084 386 LEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGK------------IPRWLG 453 (850)
Q Consensus 386 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------~~~~~~ 453 (850)
|+.+.+..+ +.......|.++ +++.+.+..+ +.......|..+..++...+..+..... ....+.
T Consensus 115 L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (379)
T 4h09_A 115 LDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYP 191 (379)
T ss_dssp CSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECC
T ss_pred cccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccc
Confidence 999999865 333444555554 6777776654 3445566788899999998876543211 111222
Q ss_pred CCCCCcEEECCCCccccCcchhccCCCCCCEEeccCCcCCCCCCCCcCCCcccEEEccCcccccccCccccCCCCCCcEE
Q 003084 454 NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTL 533 (850)
Q Consensus 454 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 533 (850)
.+..+..+.+..... ......+..+.. ++.+.+..+- ..+...+|.++..|+.+
T Consensus 192 ~~~~~~~~~~~~~~~-~i~~~~f~~~~~-----------------------l~~i~~~~~~--~~i~~~~f~~~~~L~~i 245 (379)
T 4h09_A 192 AAKTGTEFTIPSTVK-TVTAYGFSYGKN-----------------------LKKITITSGV--TTLGDGAFYGMKALDEI 245 (379)
T ss_dssp TTCCCSEEECCTTCC-EECTTTTTTCSS-----------------------CSEEECCTTC--CEECTTTTTTCSSCCEE
T ss_pred cccccccccccccee-EEeecccccccc-----------------------cceeeeccce--eEEccccccCCccceEE
Confidence 233333333322211 122233333444 4444443321 23444577888888888
Q ss_pred ECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhccCCCCCCEEeCCCCcCCccCCCCcccCccccccCCCCCCCC
Q 003084 534 DLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDK 613 (850)
Q Consensus 534 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (850)
.+..+ ++.+...+|.++.+|+.+.+..+ +......+|.++++|+.+.+.++.++.+...+|.++.
T Consensus 246 ~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~------------- 310 (379)
T 4h09_A 246 AIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV------------- 310 (379)
T ss_dssp EECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT-------------
T ss_pred EcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCC-------------
Confidence 88765 55466677888888888888654 5545666788888888888888888777777777755
Q ss_pred CCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCccccCCCCCCEEECcCCcCCccC
Q 003084 614 PFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTI 693 (850)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 693 (850)
+|++++|..+ ++.+...+|.++++|+.+.+..+ ++.+.
T Consensus 311 ----------------------------------------~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~ 348 (379)
T 4h09_A 311 ----------------------------------------KLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIE 348 (379)
T ss_dssp ----------------------------------------TCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEEC
T ss_pred ----------------------------------------CCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEc
Confidence 7888888654 55566678999999999988765 66666
Q ss_pred cccCCCCCCC
Q 003084 694 PLTFSNLRHI 703 (850)
Q Consensus 694 ~~~~~~l~~L 703 (850)
..+|.++..+
T Consensus 349 ~~aF~~c~~~ 358 (379)
T 4h09_A 349 SGAFEGSSIT 358 (379)
T ss_dssp TTTTTTSSCC
T ss_pred hhHhhCCCCC
Confidence 7778776433
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.25 E-value=3.9e-13 Score=143.05 Aligned_cols=166 Identities=17% Similarity=0.238 Sum_probs=96.0
Q ss_pred CCCCCEEEcCCCCCcccchhhhhcc----CCCCcEEeCCCCcCCCcccCCcCCCCCcccEEecccCCcccccchhhHhhh
Q 003084 30 FTNLEYLTLDDSSLHISLLQSIGSI----FPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGE 105 (850)
Q Consensus 30 l~~L~~L~Ls~n~i~~~~~~~l~~~----~~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~ 105 (850)
.++|++|+|++|.++......+... .++|++|+|++|.+...........+++|++|+| ++|.+++.....++.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~L--s~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGL--QLNSLGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEEC--CSSCCCHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhc--CCCCCCHHHHHHHHH
Confidence 3456666666666665433333321 2466677776666653322211233456677777 666665554444432
Q ss_pred ----cCCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCCccccc----cCccccCCCCCCEEECCCCcCcCC--
Q 003084 106 ----SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGS----LPWCLANTTSLRILDVSFNQLTGS-- 175 (850)
Q Consensus 106 ----~l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~i~~~-- 175 (850)
..++|++|++++|.++..+....+..+..+++|++|+|++|.+... ++.++...++|++|+|++|.+++.
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence 2466777777777765422222223445667777777777777643 245566667788888888777531
Q ss_pred --CCcccccCCCCCCeEECcCCcCc
Q 003084 176 --ISSSPLVHLTSIEELRLSNNHFR 198 (850)
Q Consensus 176 --i~~~~~~~l~~L~~L~L~~n~~~ 198 (850)
+.. .+...++|++|+|++|.+.
T Consensus 229 ~~l~~-~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 229 LALAR-AAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHH-HHHHCSSCCEEECTTSSCC
T ss_pred HHHHH-HHHhCCCCCEEeccCCCCC
Confidence 222 3445677888888888776
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.20 E-value=5.7e-13 Score=141.84 Aligned_cols=171 Identities=20% Similarity=0.247 Sum_probs=121.9
Q ss_pred cCCCCcEEeCCCCcCCCcccC---CcCC-CCCcccEEecccCCcccccchhhHhhhcCCCCcEEEccCCCCCCCCCccCC
Q 003084 54 IFPSLKNLSMSGCEVNGVLSG---QGFP-HFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILD 129 (850)
Q Consensus 54 ~~~~L~~L~Ls~~~~~~~~~~---~~~~-~l~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~ls~n~i~~~~~~i~~ 129 (850)
.++.|++|+|++|.++..... ..+. ..++|++|+| ++|.+++.....+...+++|+.|++++|.++..+.....
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~L--s~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNL--ASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEEC--TTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEe--cCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence 467899999999998743221 0122 3479999999 888887776666665578899999999998752222222
Q ss_pred cCC-CCCCCCCEEEccCCccccc----cCccccCCCCCCEEECCCCcCcCC----CCcccccCCCCCCeEECcCCcCcCC
Q 003084 130 QGL-CPLAHLQELYIDNNDLRGS----LPWCLANTTSLRILDVSFNQLTGS----ISSSPLVHLTSIEELRLSNNHFRIP 200 (850)
Q Consensus 130 ~~l-~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~i~~~----i~~~~~~~l~~L~~L~L~~n~~~~~ 200 (850)
..+ ...++|++|+|++|.++.. ++.++..+++|++|+|++|.+.+. ++. .+...++|++|+|++|.++..
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~-~L~~~~~L~~L~Ls~N~i~~~ 226 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA-QLDRNRQLQELNVAYNGAGDT 226 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH-HGGGCSCCCEEECCSSCCCHH
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH-HHhcCCCcCeEECCCCCCCHH
Confidence 222 3568899999999998753 445567889999999999998632 233 567778999999999988732
Q ss_pred C---CcccccCCCCccEEEccCCccccccc
Q 003084 201 V---SLEPLFNHSKLKIFDAKNNEINGEIN 227 (850)
Q Consensus 201 ~---~~~~l~~l~~L~~L~l~~n~~~~~~~ 227 (850)
. -...+..+++|+.|++++|.++....
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~ 256 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFNELSSEGR 256 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTSSCCHHHH
T ss_pred HHHHHHHHHHhCCCCCEEeccCCCCCHHHH
Confidence 1 11234567889999999999876543
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.75 E-value=7.9e-09 Score=108.69 Aligned_cols=185 Identities=17% Similarity=0.208 Sum_probs=115.6
Q ss_pred CCCCEEeCCCCcCCc-cc-----cCccccCCCCCCCEEEcCCCCCcc---------cchhhhhccCCCCcEEeCCCCcCC
Q 003084 5 PSLNTLHLESNNFTA-TL-----TTTQELHNFTNLEYLTLDDSSLHI---------SLLQSIGSIFPSLKNLSMSGCEVN 69 (850)
Q Consensus 5 ~~L~~L~Ls~~~~~~-~~-----~~~~~~~~l~~L~~L~Ls~n~i~~---------~~~~~l~~~~~~L~~L~Ls~~~~~ 69 (850)
+.++.|.+......+ .. ...+++.++++|+.|.+.+..... .....+.. +|+|+.|+|++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~-~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDA-MPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHT-CTTCCEEEEECCBTC
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhc-CCCCcEEEEeCCCCc
Confidence 457788887554431 10 002345678999999997653211 11233455 899999999988321
Q ss_pred CcccCCcCCCCCcccEEecccCCcccccchhhHhhh-cCCCCcEEEccC--CCCCCCC-C-ccCCcCC--CCCCCCCEEE
Q 003084 70 GVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGE-SMPSLKYLSLSG--STLGTNS-S-RILDQGL--CPLAHLQELY 142 (850)
Q Consensus 70 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~-~l~~L~~L~ls~--n~i~~~~-~-~i~~~~l--~~l~~L~~L~ 142 (850)
.++ .+ .+++|++|++ ..+.+.......+.. .+++|+.|+|+. +...+.. . .+.+ .+ ..+++|++|+
T Consensus 186 -~l~--~~-~~~~L~~L~L--~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~-~l~~~~~p~Lr~L~ 258 (362)
T 2ra8_A 186 -SIG--KK-PRPNLKSLEI--ISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP-LFSKDRFPNLKWLG 258 (362)
T ss_dssp -BCC--SC-BCTTCSEEEE--ECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG-GSCTTTCTTCCEEE
T ss_pred -eec--cc-cCCCCcEEEE--ecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH-HHhcCCCCCcCEEe
Confidence 222 23 3789999999 677777666666652 389999999863 2222210 0 1111 22 3478899999
Q ss_pred ccCCccccccCcccc---CCCCCCEEECCCCcCcCC----CCcccccCCCCCCeEECcCCcCc
Q 003084 143 IDNNDLRGSLPWCLA---NTTSLRILDVSFNQLTGS----ISSSPLVHLTSIEELRLSNNHFR 198 (850)
Q Consensus 143 L~~n~l~~~~~~~~~---~l~~L~~L~Ls~n~i~~~----i~~~~~~~l~~L~~L~L~~n~~~ 198 (850)
|.+|.+.+..+..+. .+++|++|+|+.|.+.+. ++. .+.++++|+.|++++|.++
T Consensus 259 L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~-~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 259 IVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLD-HVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp EESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHT-THHHHTTCSEEECCSBBCC
T ss_pred CCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHh-hcccCCcceEEECCCCcCC
Confidence 988887754333332 467888888888887642 222 3456778888888888765
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.68 E-value=8.6e-09 Score=108.40 Aligned_cols=163 Identities=17% Similarity=0.110 Sum_probs=97.5
Q ss_pred ccCCCCCCcEEECcCCcCCCCcCccccCCCCCCEEECcCCcCccCCchhcc--CCCCCCEEeCCCC--cCCccCCCCccc
Q 003084 523 TFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC--RLNQLQLLDLSDN--NLHGLIPSCFDN 598 (850)
Q Consensus 523 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~Ls~n--~l~~~~~~~~~~ 598 (850)
.+..+|+|+.|++++|.-. ..+. +. +++|+.|++..|.+.......+. .+|+|+.|+|+.+ ...+.. .+..
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~--~~~~ 241 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG--DMNV 241 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS--CGGG
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch--hHHH
Confidence 4567788999999887311 1222 33 78899999988887654444444 6899999988632 211100 0000
Q ss_pred CccccccCCCCCCCCCCcccccccCCCCchhhhhhhhhhhccccchhcchhhhhccCCeEEccCCccccCCCcccc---C
Q 003084 599 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIG---N 675 (850)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~---~ 675 (850)
.. .......+++|++|+|++|.+.+..+..+. .
T Consensus 242 l~--------------------------------------------~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~ 277 (362)
T 2ra8_A 242 FR--------------------------------------------PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI 277 (362)
T ss_dssp TG--------------------------------------------GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSS
T ss_pred HH--------------------------------------------HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCcc
Confidence 00 000011245788888888887643333332 4
Q ss_pred CCCCCEEECcCCcCCccC----cccCCCCCCCCEEECcCCcCcccCChhhhc-CCCCCEEEccCCc
Q 003084 676 LTRIQTLNLSHNNLTGTI----PLTFSNLRHIESLDLSYNKLSGKIPRQLVD-LNTLAIFIVAYNN 736 (850)
Q Consensus 676 l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~l~~N~ 736 (850)
+++|+.|+|+.|.+++.. +..+..+++|+.|++++|.++...-..+.. + ...+++++++
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 678888888888887532 333345688888888888877543333433 2 3456776665
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.45 E-value=4.2e-08 Score=92.95 Aligned_cols=93 Identities=17% Similarity=0.194 Sum_probs=45.6
Q ss_pred CCCCCcccEEecccCCcccccchh----hHhhhcCCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEc--cCCcccc
Q 003084 77 FPHFKSLEHLDMRFARIALNTSFL----QIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYI--DNNDLRG 150 (850)
Q Consensus 77 ~~~l~~L~~L~L~~~~~~~~~~~~----~~l~~~l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L--~~n~l~~ 150 (850)
+...++|++|+| ++|.+.+... ..+.. .+.|++|+|++|.|+..+.......+...+.|++|+| ++|.+..
T Consensus 61 L~~~~~L~~L~L--s~n~i~~~g~~~l~~~L~~-n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 61 LKTNTYVKKFSI--VGTRSNDPVAFALAEMLKV-NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp HTTCCSCCEEEC--TTSCCCHHHHHHHHHHHHH-CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred HHhCCCcCEEEC--cCCCCChHHHHHHHHHHHh-CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence 344455555555 4555444332 22333 4566666666666654322222334455556666666 5565553
Q ss_pred c----cCccccCCCCCCEEECCCCcC
Q 003084 151 S----LPWCLANTTSLRILDVSFNQL 172 (850)
Q Consensus 151 ~----~~~~~~~l~~L~~L~Ls~n~i 172 (850)
. +...+...+.|++|++++|.+
T Consensus 138 ~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 138 NVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2 222333445555555555544
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.42 E-value=3.8e-08 Score=93.22 Aligned_cols=122 Identities=16% Similarity=0.168 Sum_probs=79.7
Q ss_pred ccccCCCCCCCEEEcCCC-CCcccchh----hhhccCCCCcEEeCCCCcCCCcccC---CcCCCCCcccEEecccCCccc
Q 003084 24 TQELHNFTNLEYLTLDDS-SLHISLLQ----SIGSIFPSLKNLSMSGCEVNGVLSG---QGFPHFKSLEHLDMRFARIAL 95 (850)
Q Consensus 24 ~~~~~~l~~L~~L~Ls~n-~i~~~~~~----~l~~~~~~L~~L~Ls~~~~~~~~~~---~~~~~l~~L~~L~L~~~~~~~ 95 (850)
...+...+.|++|+|++| .+.+.... .+.. .++|++|+|++|.+...... ..+...+.|++|+| ++|.+
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~-~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L--~~N~i 105 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKT-NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNV--ESNFI 105 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTT-CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEEC--CSSCC
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHh-CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEEC--cCCcC
Confidence 345667778888888887 77654333 3444 67788888888877532211 13445577888888 77777
Q ss_pred ccchh----hHhhhcCCCCcEEEc--cCCCCCCCCCccCCcCCCCCCCCCEEEccCCccc
Q 003084 96 NTSFL----QIIGESMPSLKYLSL--SGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLR 149 (850)
Q Consensus 96 ~~~~~----~~l~~~l~~L~~L~l--s~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n~l~ 149 (850)
.+... ..+.. .+.|++|++ ++|.++..+.......+...+.|++|++++|.+.
T Consensus 106 ~~~g~~~l~~~L~~-n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 106 SGSGILALVEALQS-NTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CHHHHHHHHHGGGG-CSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CHHHHHHHHHHHHh-CCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 66543 33444 577888888 7788866333223345566688899999888875
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.26 E-value=2e-07 Score=85.43 Aligned_cols=83 Identities=13% Similarity=0.270 Sum_probs=38.5
Q ss_pred CCCEEEcCCCCCcccchhhhhccCCCCcEEeCCCCc-CCCcccCCcCCCC----CcccEEecccCCcc-cccchhhHhhh
Q 003084 32 NLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCE-VNGVLSGQGFPHF----KSLEHLDMRFARIA-LNTSFLQIIGE 105 (850)
Q Consensus 32 ~L~~L~Ls~n~i~~~~~~~l~~~~~~L~~L~Ls~~~-~~~~~~~~~~~~l----~~L~~L~L~~~~~~-~~~~~~~~l~~ 105 (850)
+|++||++++.+++.....+.. +++|++|+|++|. +++... ..++.+ ++|++|+| ++|. +++.....+..
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~-~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~L--s~C~~ITD~Gl~~L~~ 137 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEG-LQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEI--ISCGNVTDKGIIALHH 137 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTT-CSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEE--ESCTTCCHHHHHHGGG
T ss_pred eEeEEeCcCCCccHHHHHHhcC-CCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEc--CCCCcCCHHHHHHHhc
Confidence 3555555555555444444444 5555555555553 322111 123332 24555555 4442 44444444544
Q ss_pred cCCCCcEEEccCCC
Q 003084 106 SMPSLKYLSLSGST 119 (850)
Q Consensus 106 ~l~~L~~L~ls~n~ 119 (850)
+++|++|++++|.
T Consensus 138 -~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 138 -FRNLKYLFLSDLP 150 (176)
T ss_dssp -CTTCCEEEEESCT
T ss_pred -CCCCCEEECCCCC
Confidence 5555555555553
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.23 E-value=9.6e-07 Score=87.66 Aligned_cols=78 Identities=23% Similarity=0.276 Sum_probs=49.8
Q ss_pred hccCCeEEccCCccccC--CCccccCCCCCCEEECcCCcCCccCcccCCCCC--CCCEEECcCCcCcccCCh-------h
Q 003084 652 LSLLAGLDLSCNKLVGH--IPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLR--HIESLDLSYNKLSGKIPR-------Q 720 (850)
Q Consensus 652 l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~p~-------~ 720 (850)
++.|++|+|++|++++. +|..+..+++|+.|+|++|+|++. ..+..+. +|+.|+|++|++.+.+|+ .
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 55677777777777762 345556677777777777777754 2233333 777777777777665542 3
Q ss_pred hhcCCCCCEEE
Q 003084 721 LVDLNTLAIFI 731 (850)
Q Consensus 721 l~~l~~L~~L~ 731 (850)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 55667776664
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.01 E-value=1.4e-06 Score=86.37 Aligned_cols=84 Identities=23% Similarity=0.308 Sum_probs=63.7
Q ss_pred EEccCCccc---cCCCccccCCCCCCEEECcCCcCCcc--CcccCCCCCCCCEEECcCCcCcccCChhhhcCC--CCCEE
Q 003084 658 LDLSCNKLV---GHIPPQIGNLTRIQTLNLSHNNLTGT--IPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN--TLAIF 730 (850)
Q Consensus 658 L~Ls~n~l~---~~~p~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L 730 (850)
++++.|... ...+....++++|+.|+|++|+|++. +|..+..+++|+.|+|++|+|++. ..+..+. .|+.|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 667777433 22222235688999999999999973 456677899999999999999965 3344444 99999
Q ss_pred EccCCcCcCCCCC
Q 003084 731 IVAYNNLSGKIPE 743 (850)
Q Consensus 731 ~l~~N~l~~~~p~ 743 (850)
++++|++++.+|.
T Consensus 226 ~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 226 WLDGNSLCDTFRD 238 (267)
T ss_dssp ECTTSTTGGGCSS
T ss_pred EccCCcCccccCc
Confidence 9999999987763
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.84 E-value=5.9e-06 Score=75.67 Aligned_cols=85 Identities=8% Similarity=0.182 Sum_probs=46.2
Q ss_pred CCCcEEeCCCCcCCCcccCCcCCCCCcccEEecccCCcc-cccchhhHhhhc---CCCCcEEEccCCC-CCCCCCccCCc
Q 003084 56 PSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIA-LNTSFLQIIGES---MPSLKYLSLSGST-LGTNSSRILDQ 130 (850)
Q Consensus 56 ~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~-~~~~~~~~l~~~---l~~L~~L~ls~n~-i~~~~~~i~~~ 130 (850)
.+|++||+++|.++...-. .+.++++|++|+| ++|. +++.....++.. +++|++|++++|. ++..+ + .
T Consensus 61 ~~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L--~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G--l--~ 133 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFD-HMEGLQYVEKIRL--CKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG--I--I 133 (176)
T ss_dssp CCEEEEEEESCCCCGGGGG-GGTTCSCCCEEEE--ESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH--H--H
T ss_pred ceEeEEeCcCCCccHHHHH-HhcCCCCCCEEEe--CCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH--H--H
Confidence 3566666666665543332 4566666666666 5553 555555555540 2356666666664 44311 1 1
Q ss_pred CCCCCCCCCEEEccCCc
Q 003084 131 GLCPLAHLQELYIDNND 147 (850)
Q Consensus 131 ~l~~l~~L~~L~L~~n~ 147 (850)
.+.++++|++|++++|.
T Consensus 134 ~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HGGGCTTCCEEEEESCT
T ss_pred HHhcCCCCCEEECCCCC
Confidence 34456666666666663
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.37 E-value=5.1e-05 Score=70.90 Aligned_cols=67 Identities=22% Similarity=0.192 Sum_probs=31.5
Q ss_pred CCCCcccEEecccCCcccccchhhHhhhc---CCCCcEEEccCCCCCCCCCccCCcCCCCCCCCCEEEccCC
Q 003084 78 PHFKSLEHLDMRFARIALNTSFLQIIGES---MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNN 146 (850)
Q Consensus 78 ~~l~~L~~L~L~~~~~~~~~~~~~~l~~~---l~~L~~L~ls~n~i~~~~~~i~~~~l~~l~~L~~L~L~~n 146 (850)
..-+.|+.|+| ++|.+.+.....++.. -+.|+.|+|++|.|+..+......++..-+.|++|+|+++
T Consensus 67 ~~N~~L~~L~L--~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 67 CNSKHIEKFSL--ANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp TTCSCCCEEEC--TTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred hhCCCcCEEEc--cCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 33445555555 5555544333332211 3556666666666554333322334444445566666543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.32 E-value=4.5e-05 Score=71.25 Aligned_cols=88 Identities=11% Similarity=0.138 Sum_probs=41.7
Q ss_pred CCCCCCCEEEcCCC-CCcccchh----hhhccCCCCcEEeCCCCcCCCcccC---CcCCCCCcccEEecccCCcccccch
Q 003084 28 HNFTNLEYLTLDDS-SLHISLLQ----SIGSIFPSLKNLSMSGCEVNGVLSG---QGFPHFKSLEHLDMRFARIALNTSF 99 (850)
Q Consensus 28 ~~l~~L~~L~Ls~n-~i~~~~~~----~l~~~~~~L~~L~Ls~~~~~~~~~~---~~~~~l~~L~~L~L~~~~~~~~~~~ 99 (850)
.+-+.|++|+|+++ .|.+.... ++.. -..|++|+|++|.+...... .++..-+.|++|+| ..|.+.+..
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~-N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L--~~N~Ig~~G 114 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACN-SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNV--ESNFLTPEL 114 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTT-CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEEC--CSSBCCHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhh-CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEec--CCCcCCHHH
Confidence 34455556666553 55433222 3333 45566666666555422211 01223355666666 555555444
Q ss_pred hhHhhhc---CCCCcEEEccCC
Q 003084 100 LQIIGES---MPSLKYLSLSGS 118 (850)
Q Consensus 100 ~~~l~~~---l~~L~~L~ls~n 118 (850)
...+... -+.|+.|+|+++
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHhhCCceeEEECCCC
Confidence 4433332 244666666654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.26 E-value=0.00028 Score=61.66 Aligned_cols=61 Identities=21% Similarity=0.227 Sum_probs=47.8
Q ss_pred CEEECcCCcCC-ccCcccCCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEccCCcCcCCCC
Q 003084 680 QTLNLSHNNLT-GTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP 742 (850)
Q Consensus 680 ~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p 742 (850)
..++.+++.++ ..+|..+. .+|+.|+|++|+|+...+..|..+++|+.|++++|++.+...
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 47888999887 35565543 578999999999997777888889999998888888776543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.10 E-value=0.00093 Score=58.27 Aligned_cols=57 Identities=23% Similarity=0.253 Sum_probs=40.5
Q ss_pred CeEEccCCccc-cCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCCcCc
Q 003084 656 AGLDLSCNKLV-GHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 714 (850)
Q Consensus 656 ~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 714 (850)
..++.++++++ ..+|..+. ++|+.|+|++|+|+.+.+..|..+++|+.|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46777777776 24554433 36788888888888777777777888888888888764
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=63.17 E-value=8.6 Score=30.97 Aligned_cols=42 Identities=21% Similarity=0.184 Sum_probs=21.2
Q ss_pred ccCccccCCCCCCEEECCCCcCcCCCCcccccCCCCCCeEECcC
Q 003084 151 SLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 194 (850)
Q Consensus 151 ~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~ 194 (850)
+...+|.+|.+|+.+.+..+ ++ .|...+|.+|.+|+.+.+..
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEECC
T ss_pred ecHHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEcC
Confidence 33445555555555555543 22 44444555555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=58.96 E-value=21 Score=28.67 Aligned_cols=48 Identities=21% Similarity=0.167 Sum_probs=32.6
Q ss_pred CccccCCCccccCCCCCCEEECcCCcCCccCcccCCCCCCCCEEECcCC
Q 003084 663 NKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 711 (850)
Q Consensus 663 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 711 (850)
..++.+....|.++++|+.+.|..+ ++.+...+|.++.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3455555667778888888877765 44466677777777777777553
No 167
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=29.90 E-value=32 Score=22.62 Aligned_cols=6 Identities=17% Similarity=0.373 Sum_probs=2.7
Q ss_pred ehhhhH
Q 003084 797 ITFTIS 802 (850)
Q Consensus 797 ~~~~~~ 802 (850)
++.++|
T Consensus 15 a~~vVG 20 (44)
T 2jwa_A 15 ISAVVG 20 (44)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344444
No 168
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=24.17 E-value=26 Score=22.21 Aligned_cols=11 Identities=0% Similarity=-0.007 Sum_probs=4.6
Q ss_pred hhhhHHHHHHH
Q 003084 798 TFTISYVIVIF 808 (850)
Q Consensus 798 ~~~~~~~~~~~ 808 (850)
+.+++.++++.
T Consensus 15 GiVvG~v~gv~ 25 (38)
T 2k1k_A 15 AVIFGLLLGAA 25 (38)
T ss_dssp HHHHHHHHHHH
T ss_pred eeehHHHHHHH
Confidence 34444444333
Done!