Query 003086
Match_columns 849
No_of_seqs 512 out of 4385
Neff 9.7
Searched_HMMs 46136
Date Thu Mar 28 16:45:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003086.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003086hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.7E-90 3.6E-95 805.2 39.4 796 2-834 1-849 (889)
2 PLN03210 Resistant to P. syrin 100.0 6.6E-58 1.4E-62 563.7 48.1 620 158-835 181-914 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 5.1E-44 1.1E-48 378.7 18.9 277 166-448 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 3E-21 6.6E-26 239.3 14.8 231 528-776 139-370 (968)
5 PLN00113 leucine-rich repeat r 99.8 1.1E-20 2.3E-25 234.4 15.0 201 510-722 165-369 (968)
6 KOG0444 Cytoskeletal regulator 99.8 1.7E-20 3.8E-25 197.8 -3.9 280 524-830 73-378 (1255)
7 KOG4194 Membrane glycoprotein 99.7 7.4E-18 1.6E-22 177.4 3.9 268 551-839 142-430 (873)
8 KOG4194 Membrane glycoprotein 99.7 2.4E-17 5.3E-22 173.5 4.7 161 550-720 94-256 (873)
9 KOG0444 Cytoskeletal regulator 99.6 6.9E-18 1.5E-22 178.4 -2.9 236 549-803 117-376 (1255)
10 PLN03210 Resistant to P. syrin 99.6 1.4E-14 3.1E-19 179.9 16.6 277 527-829 609-945 (1153)
11 KOG0472 Leucine-rich repeat pr 99.5 1.3E-16 2.8E-21 161.0 -5.0 161 549-723 128-289 (565)
12 KOG0617 Ras suppressor protein 99.5 6.3E-16 1.4E-20 138.2 -3.3 143 549-702 47-190 (264)
13 PRK04841 transcriptional regul 99.5 3.7E-12 8E-17 157.5 27.6 293 161-499 14-333 (903)
14 PRK00411 cdc6 cell division co 99.5 2E-11 4.3E-16 135.4 29.9 316 156-487 25-374 (394)
15 KOG0472 Leucine-rich repeat pr 99.5 6.8E-16 1.5E-20 155.9 -7.7 213 550-782 60-272 (565)
16 TIGR03015 pepcterm_ATPase puta 99.4 6.3E-11 1.4E-15 124.1 24.3 200 167-371 25-242 (269)
17 TIGR02928 orc1/cdc6 family rep 99.4 2.5E-10 5.5E-15 125.2 29.5 306 156-474 10-351 (365)
18 KOG0618 Serine/threonine phosp 99.4 7E-14 1.5E-18 155.8 -0.7 213 555-781 42-283 (1081)
19 KOG0618 Serine/threonine phosp 99.4 4.3E-14 9.4E-19 157.5 -2.8 246 549-820 255-503 (1081)
20 KOG0617 Ras suppressor protein 99.3 3.3E-14 7.1E-19 127.3 -3.7 157 554-722 29-186 (264)
21 PRK15370 E3 ubiquitin-protein 99.3 2.4E-12 5.2E-17 149.5 8.7 185 559-779 200-384 (754)
22 PRK15387 E3 ubiquitin-protein 99.3 9.7E-12 2.1E-16 143.5 11.7 219 557-840 241-460 (788)
23 cd00116 LRR_RI Leucine-rich re 99.3 2E-13 4.3E-18 147.3 -2.0 225 550-775 15-263 (319)
24 KOG4237 Extracellular matrix p 99.3 2.2E-13 4.8E-18 137.9 -2.3 116 544-663 77-194 (498)
25 cd00116 LRR_RI Leucine-rich re 99.2 1.4E-12 3E-17 140.7 0.6 247 528-777 22-293 (319)
26 PRK00080 ruvB Holliday junctio 99.2 2.2E-10 4.8E-15 122.8 16.6 261 161-474 25-311 (328)
27 TIGR00635 ruvB Holliday juncti 99.2 2E-10 4.3E-15 122.5 16.0 274 161-473 4-289 (305)
28 PRK15370 E3 ubiquitin-protein 99.2 2.4E-11 5.3E-16 141.2 9.4 201 558-800 178-378 (754)
29 PF01637 Arch_ATPase: Archaeal 99.2 6E-11 1.3E-15 121.6 10.2 195 163-366 1-233 (234)
30 PRK15387 E3 ubiquitin-protein 99.2 1.2E-10 2.6E-15 134.6 12.3 224 549-831 215-438 (788)
31 COG2909 MalT ATP-dependent tra 99.1 2.7E-09 5.9E-14 119.6 20.1 291 171-500 25-340 (894)
32 KOG4658 Apoptotic ATPase [Sign 99.1 3E-11 6.4E-16 142.7 3.8 230 556-803 543-784 (889)
33 PTZ00112 origin recognition co 99.0 5.6E-08 1.2E-12 110.0 24.1 303 158-474 752-1087(1164)
34 PF05729 NACHT: NACHT domain 99.0 1.7E-09 3.6E-14 104.2 10.2 142 185-333 1-163 (166)
35 KOG4237 Extracellular matrix p 99.0 3.1E-11 6.7E-16 122.6 -2.5 252 560-844 69-341 (498)
36 COG2256 MGS1 ATPase related to 98.9 8.3E-09 1.8E-13 106.4 10.9 177 157-364 26-209 (436)
37 COG1474 CDC6 Cdc6-related prot 98.9 5.7E-07 1.2E-11 96.4 23.9 296 159-474 15-335 (366)
38 PF05496 RuvB_N: Holliday junc 98.9 1.2E-08 2.6E-13 98.5 9.9 179 161-371 24-225 (233)
39 COG3899 Predicted ATPase [Gene 98.9 1E-07 2.3E-12 113.5 20.1 313 162-496 1-384 (849)
40 PRK13342 recombination factor 98.8 2.5E-08 5.4E-13 110.3 12.9 178 161-368 12-197 (413)
41 KOG0532 Leucine-rich repeat (L 98.8 3.2E-10 7E-15 120.5 -3.1 161 549-724 89-249 (722)
42 PTZ00202 tuzin; Provisional 98.8 1E-06 2.2E-11 92.8 22.4 168 157-333 258-434 (550)
43 PRK07003 DNA polymerase III su 98.8 3E-07 6.4E-12 104.0 19.8 181 161-368 16-222 (830)
44 PF14580 LRR_9: Leucine-rich r 98.8 5.3E-09 1.1E-13 99.1 4.8 85 554-646 15-101 (175)
45 PRK06893 DNA replication initi 98.8 8.8E-08 1.9E-12 96.8 14.0 153 184-369 39-205 (229)
46 PF13401 AAA_22: AAA domain; P 98.8 3.4E-08 7.4E-13 90.8 10.0 116 184-300 4-125 (131)
47 KOG1909 Ran GTPase-activating 98.7 1.3E-09 2.8E-14 109.8 -1.3 231 550-799 22-280 (382)
48 TIGR03420 DnaA_homol_Hda DnaA 98.7 1.1E-07 2.5E-12 96.5 12.2 167 167-368 23-202 (226)
49 PRK04195 replication factor C 98.7 1.9E-06 4.2E-11 97.3 22.5 247 161-447 14-271 (482)
50 PRK14960 DNA polymerase III su 98.7 1.4E-06 3E-11 97.7 19.8 193 161-367 15-219 (702)
51 PRK14961 DNA polymerase III su 98.7 7E-07 1.5E-11 97.0 17.3 191 161-366 16-219 (363)
52 PRK05564 DNA polymerase III su 98.7 7.3E-07 1.6E-11 95.1 17.0 180 161-367 4-190 (313)
53 PRK12402 replication factor C 98.6 3.9E-07 8.4E-12 98.9 14.9 197 161-366 15-225 (337)
54 PRK12323 DNA polymerase III su 98.6 5.7E-07 1.2E-11 100.4 16.2 180 161-367 16-225 (700)
55 KOG0532 Leucine-rich repeat (L 98.6 3.6E-09 7.7E-14 112.8 -1.9 195 557-771 74-269 (722)
56 PRK14949 DNA polymerase III su 98.6 5.7E-07 1.2E-11 103.8 15.1 183 161-367 16-220 (944)
57 KOG3207 Beta-tubulin folding c 98.6 1.1E-08 2.4E-13 105.8 1.2 93 681-776 218-315 (505)
58 KOG3207 Beta-tubulin folding c 98.6 8.8E-09 1.9E-13 106.6 -0.3 164 553-721 141-313 (505)
59 PF13191 AAA_16: AAA ATPase do 98.6 1.3E-07 2.7E-12 92.9 7.8 46 162-207 1-47 (185)
60 PRK06645 DNA polymerase III su 98.6 1.4E-06 3.1E-11 97.0 16.6 192 161-364 21-226 (507)
61 KOG2028 ATPase related to the 98.6 3.1E-07 6.6E-12 92.9 10.0 162 183-363 161-332 (554)
62 PF13173 AAA_14: AAA domain 98.5 2.7E-07 5.8E-12 84.1 7.8 121 184-325 2-127 (128)
63 PRK00440 rfc replication facto 98.5 1.9E-06 4.2E-11 92.7 15.8 182 161-366 17-202 (319)
64 PRK14963 DNA polymerase III su 98.5 2.2E-06 4.8E-11 96.0 16.6 195 161-365 14-215 (504)
65 PLN03025 replication factor C 98.5 1.9E-06 4.2E-11 92.1 15.3 183 161-365 13-198 (319)
66 PRK14956 DNA polymerase III su 98.5 1.1E-06 2.5E-11 95.7 13.5 196 161-366 18-221 (484)
67 TIGR02903 spore_lon_C ATP-depe 98.5 8.6E-07 1.9E-11 102.2 13.3 202 161-370 154-398 (615)
68 COG4886 Leucine-rich repeat (L 98.5 1.1E-07 2.4E-12 105.5 5.8 177 554-749 112-289 (394)
69 cd00009 AAA The AAA+ (ATPases 98.5 8.5E-07 1.8E-11 83.3 11.0 124 164-302 1-131 (151)
70 PRK09112 DNA polymerase III su 98.5 3.2E-06 7E-11 90.3 16.3 196 160-368 22-241 (351)
71 PRK14957 DNA polymerase III su 98.5 2.6E-06 5.6E-11 95.6 16.1 184 161-368 16-222 (546)
72 PLN03150 hypothetical protein; 98.5 1.8E-07 3.9E-12 108.9 6.8 102 559-663 419-521 (623)
73 PRK14962 DNA polymerase III su 98.5 4.3E-06 9.4E-11 92.9 17.3 183 161-371 14-223 (472)
74 PRK13341 recombination factor 98.5 1.6E-06 3.5E-11 100.8 14.2 175 161-363 28-213 (725)
75 PRK08691 DNA polymerase III su 98.5 2.7E-06 5.8E-11 96.4 15.3 180 161-367 16-220 (709)
76 PF14516 AAA_35: AAA-like doma 98.5 3.6E-05 7.9E-10 82.3 23.2 204 159-376 9-248 (331)
77 PRK08727 hypothetical protein; 98.4 4.5E-06 9.7E-11 84.6 15.3 148 184-364 41-201 (233)
78 TIGR00678 holB DNA polymerase 98.4 5.4E-06 1.2E-10 81.4 15.3 91 261-363 95-187 (188)
79 KOG1259 Nischarin, modulator o 98.4 6E-08 1.3E-12 95.3 1.3 130 680-825 279-410 (490)
80 PRK07994 DNA polymerase III su 98.4 2.8E-06 6.1E-11 96.8 14.8 193 161-368 16-221 (647)
81 PRK14958 DNA polymerase III su 98.4 1.2E-05 2.6E-10 90.5 19.6 184 161-367 16-220 (509)
82 PRK07471 DNA polymerase III su 98.4 1.1E-06 2.4E-11 94.4 10.7 195 161-368 19-239 (365)
83 KOG1909 Ran GTPase-activating 98.4 2.6E-08 5.6E-13 100.5 -1.7 224 549-774 49-310 (382)
84 PRK07940 DNA polymerase III su 98.4 5E-06 1.1E-10 90.2 15.7 176 162-368 6-214 (394)
85 PRK05896 DNA polymerase III su 98.4 3.7E-06 8E-11 94.3 14.9 194 161-368 16-222 (605)
86 PRK14964 DNA polymerase III su 98.4 5.4E-06 1.2E-10 91.6 16.1 182 161-365 13-215 (491)
87 PRK08084 DNA replication initi 98.4 5.5E-06 1.2E-10 84.1 14.8 153 184-369 45-211 (235)
88 TIGR02397 dnaX_nterm DNA polym 98.4 9.2E-06 2E-10 88.8 17.6 184 161-368 14-219 (355)
89 PRK14955 DNA polymerase III su 98.4 5.1E-06 1.1E-10 91.3 15.3 198 161-366 16-227 (397)
90 PRK14951 DNA polymerase III su 98.4 6.1E-06 1.3E-10 93.9 16.0 196 161-367 16-225 (618)
91 COG4886 Leucine-rich repeat (L 98.4 3.4E-07 7.4E-12 101.7 5.9 197 561-778 96-293 (394)
92 cd01128 rho_factor Transcripti 98.4 1.1E-06 2.3E-11 89.0 8.9 88 185-273 17-114 (249)
93 KOG1259 Nischarin, modulator o 98.4 4.5E-08 9.7E-13 96.2 -1.2 137 553-701 279-415 (490)
94 PRK14969 DNA polymerase III su 98.4 7.4E-06 1.6E-10 92.8 16.2 177 161-364 16-217 (527)
95 PRK14087 dnaA chromosomal repl 98.4 8.1E-06 1.8E-10 90.6 16.2 188 162-369 117-321 (450)
96 PRK08903 DnaA regulatory inact 98.4 3.7E-06 8E-11 85.4 12.4 173 164-371 22-203 (227)
97 PRK09087 hypothetical protein; 98.4 1.6E-05 3.4E-10 79.9 16.6 141 184-367 44-195 (226)
98 COG3903 Predicted ATPase [Gene 98.3 2.1E-06 4.5E-11 89.7 9.8 294 184-500 14-316 (414)
99 PF14580 LRR_9: Leucine-rich r 98.3 4.6E-07 1E-11 86.0 4.5 123 527-664 17-147 (175)
100 PRK09376 rho transcription ter 98.3 1.1E-06 2.5E-11 92.3 7.5 100 172-273 158-267 (416)
101 PF00308 Bac_DnaA: Bacterial d 98.3 7.7E-06 1.7E-10 81.8 13.2 181 163-367 11-208 (219)
102 KOG2543 Origin recognition com 98.3 9.7E-06 2.1E-10 83.3 13.2 166 160-332 5-192 (438)
103 PLN03150 hypothetical protein; 98.3 1.1E-06 2.3E-11 102.4 7.1 100 544-646 428-528 (623)
104 PRK14952 DNA polymerase III su 98.3 1.7E-05 3.7E-10 90.0 16.2 196 161-371 13-224 (584)
105 PRK05642 DNA replication initi 98.3 1.6E-05 3.4E-10 80.6 14.5 153 184-369 45-210 (234)
106 TIGR01242 26Sp45 26S proteasom 98.3 5.5E-06 1.2E-10 90.3 11.8 181 156-362 117-329 (364)
107 COG2255 RuvB Holliday junction 98.3 5.6E-06 1.2E-10 81.7 10.4 178 161-370 26-226 (332)
108 PRK07764 DNA polymerase III su 98.3 1.7E-05 3.7E-10 93.7 16.1 189 161-365 15-219 (824)
109 PRK14959 DNA polymerase III su 98.2 6.4E-05 1.4E-09 85.0 19.9 196 161-371 16-225 (624)
110 KOG2120 SCF ubiquitin ligase, 98.2 3.4E-08 7.4E-13 97.1 -5.4 141 680-825 229-374 (419)
111 PRK14970 DNA polymerase III su 98.2 3.2E-05 6.9E-10 84.7 16.8 181 161-364 17-206 (367)
112 PRK09111 DNA polymerase III su 98.2 2.1E-05 4.5E-10 89.9 15.5 196 161-367 24-233 (598)
113 PF13855 LRR_8: Leucine rich r 98.2 1.1E-06 2.4E-11 68.1 3.6 57 559-620 2-60 (61)
114 PF05621 TniB: Bacterial TniB 98.2 9.1E-05 2E-09 75.5 18.2 197 169-365 45-259 (302)
115 KOG2227 Pre-initiation complex 98.2 2.9E-05 6.3E-10 82.1 14.6 199 158-361 147-362 (529)
116 PRK14971 DNA polymerase III su 98.2 4.1E-05 8.8E-10 88.2 17.2 178 161-366 17-221 (614)
117 PRK14953 DNA polymerase III su 98.2 5.3E-05 1.1E-09 84.8 17.5 184 161-368 16-221 (486)
118 PRK08451 DNA polymerase III su 98.2 3.9E-05 8.5E-10 85.7 16.4 181 161-368 14-219 (535)
119 PRK07133 DNA polymerase III su 98.2 3.6E-05 7.8E-10 88.4 16.4 187 161-366 18-218 (725)
120 PRK14950 DNA polymerase III su 98.2 2.6E-05 5.6E-10 90.1 15.2 193 161-367 16-221 (585)
121 TIGR02881 spore_V_K stage V sp 98.2 1.3E-05 2.9E-10 83.0 11.4 158 162-334 7-192 (261)
122 PRK14954 DNA polymerase III su 98.2 3.8E-05 8.1E-10 87.9 16.0 200 161-367 16-229 (620)
123 TIGR03345 VI_ClpV1 type VI sec 98.2 1.7E-05 3.6E-10 95.0 13.7 183 161-361 187-390 (852)
124 PHA02544 44 clamp loader, smal 98.1 2.1E-05 4.5E-10 84.4 12.7 148 161-331 21-171 (316)
125 PRK11331 5-methylcytosine-spec 98.1 1.4E-05 3E-10 86.3 10.5 121 161-287 175-298 (459)
126 PRK03992 proteasome-activating 98.1 3.2E-05 6.9E-10 84.7 13.3 179 158-361 128-337 (389)
127 KOG2120 SCF ubiquitin ligase, 98.1 2E-07 4.3E-12 91.9 -3.8 86 559-646 186-273 (419)
128 CHL00181 cbbX CbbX; Provisiona 98.1 6.8E-05 1.5E-09 78.2 14.2 159 162-335 24-211 (287)
129 PRK05563 DNA polymerase III su 98.1 0.00012 2.5E-09 83.8 17.2 191 161-365 16-218 (559)
130 PRK06305 DNA polymerase III su 98.0 9E-05 2E-09 82.4 15.8 178 161-363 17-218 (451)
131 PRK06647 DNA polymerase III su 98.0 9.7E-05 2.1E-09 84.1 16.3 192 161-367 16-220 (563)
132 PF13855 LRR_8: Leucine rich r 98.0 6E-06 1.3E-10 64.0 4.7 60 585-645 1-61 (61)
133 TIGR00767 rho transcription te 98.0 1.6E-05 3.4E-10 84.4 9.1 89 184-273 168-266 (415)
134 TIGR02880 cbbX_cfxQ probable R 98.0 4.7E-05 1E-09 79.5 12.7 158 162-334 23-209 (284)
135 PRK14948 DNA polymerase III su 98.0 9.9E-05 2.2E-09 85.0 16.4 196 161-368 16-223 (620)
136 KOG0989 Replication factor C, 98.0 3.1E-05 6.7E-10 77.5 10.5 190 161-368 36-231 (346)
137 CHL00095 clpC Clp protease ATP 98.0 2.8E-05 6.1E-10 93.6 12.0 158 161-333 179-354 (821)
138 PRK07399 DNA polymerase III su 98.0 0.00017 3.6E-09 76.2 16.3 196 161-367 4-221 (314)
139 TIGR00362 DnaA chromosomal rep 98.0 0.00033 7.1E-09 77.7 19.1 158 184-365 136-308 (405)
140 PRK00149 dnaA chromosomal repl 98.0 0.00011 2.4E-09 82.6 15.5 179 163-365 125-320 (450)
141 TIGR02639 ClpA ATP-dependent C 98.0 4.7E-05 1E-09 90.6 13.1 157 161-333 182-358 (731)
142 KOG0531 Protein phosphatase 1, 98.0 1.5E-06 3.3E-11 96.6 0.3 105 553-666 90-195 (414)
143 PRK05707 DNA polymerase III su 98.0 0.00026 5.7E-09 75.1 17.1 97 261-367 105-203 (328)
144 PRK14088 dnaA chromosomal repl 98.0 0.00014 3.1E-09 80.8 15.6 158 184-364 130-302 (440)
145 PRK14965 DNA polymerase III su 98.0 0.00015 3.2E-09 83.4 16.1 195 161-370 16-224 (576)
146 PRK06620 hypothetical protein; 98.0 0.00018 3.9E-09 71.6 14.7 136 185-365 45-187 (214)
147 PRK11034 clpA ATP-dependent Cl 97.9 0.00011 2.3E-09 86.4 13.8 157 161-333 186-362 (758)
148 KOG0531 Protein phosphatase 1, 97.9 2E-06 4.3E-11 95.7 -0.8 84 554-645 114-198 (414)
149 KOG2982 Uncharacterized conser 97.9 2E-06 4.2E-11 85.0 -1.0 43 759-803 221-263 (418)
150 PRK14086 dnaA chromosomal repl 97.9 0.00066 1.4E-08 76.6 18.8 156 185-364 315-485 (617)
151 COG5238 RNA1 Ran GTPase-activa 97.8 3.3E-06 7.1E-11 82.4 -0.5 248 554-824 26-313 (388)
152 PRK12422 chromosomal replicati 97.8 0.00027 5.9E-09 78.3 14.1 153 184-360 141-306 (445)
153 COG3267 ExeA Type II secretory 97.8 0.0013 2.9E-08 64.6 16.9 179 183-369 50-247 (269)
154 TIGR03689 pup_AAA proteasome A 97.8 0.00017 3.7E-09 80.2 12.2 161 159-333 180-378 (512)
155 PTZ00361 26 proteosome regulat 97.8 0.00024 5.3E-09 77.9 13.2 155 161-334 183-368 (438)
156 PF00004 AAA: ATPase family as 97.8 7.4E-05 1.6E-09 68.5 7.9 68 187-273 1-69 (132)
157 TIGR03346 chaperone_ClpB ATP-d 97.8 0.00039 8.4E-09 84.2 15.5 158 161-335 173-351 (852)
158 PF05673 DUF815: Protein of un 97.8 0.00084 1.8E-08 66.4 14.9 121 158-302 24-152 (249)
159 PRK10865 protein disaggregatio 97.7 0.0003 6.4E-09 84.8 14.1 158 161-333 178-354 (857)
160 PTZ00454 26S protease regulato 97.7 0.00038 8.2E-09 75.9 13.6 181 158-363 142-353 (398)
161 KOG2004 Mitochondrial ATP-depe 97.7 0.00077 1.7E-08 75.0 15.4 159 159-333 409-596 (906)
162 PRK06090 DNA polymerase III su 97.7 0.003 6.5E-08 66.5 19.0 94 261-368 107-202 (319)
163 PRK08116 hypothetical protein; 97.7 0.0003 6.4E-09 72.7 11.0 102 185-300 115-220 (268)
164 KOG2982 Uncharacterized conser 97.7 2.3E-05 5.1E-10 77.6 2.5 135 683-825 69-210 (418)
165 PRK08058 DNA polymerase III su 97.7 0.00096 2.1E-08 71.4 15.0 149 162-332 6-181 (329)
166 CHL00176 ftsH cell division pr 97.6 0.00045 9.7E-09 79.8 13.0 176 161-361 183-388 (638)
167 smart00382 AAA ATPases associa 97.6 0.00029 6.3E-09 65.3 9.3 87 185-274 3-90 (148)
168 PRK08769 DNA polymerase III su 97.6 0.002 4.3E-08 67.8 15.9 96 261-368 112-209 (319)
169 PF12799 LRR_4: Leucine Rich r 97.6 6E-05 1.3E-09 53.5 2.9 33 559-595 2-34 (44)
170 PRK06871 DNA polymerase III su 97.6 0.0029 6.2E-08 66.8 16.6 95 260-365 105-201 (325)
171 TIGR00602 rad24 checkpoint pro 97.6 0.00047 1E-08 79.0 11.4 202 160-365 83-321 (637)
172 PRK15386 type III secretion pr 97.5 0.00029 6.4E-09 75.3 9.1 33 736-772 155-187 (426)
173 TIGR00763 lon ATP-dependent pr 97.5 0.0012 2.6E-08 79.2 15.4 162 160-333 319-505 (775)
174 KOG1859 Leucine-rich repeat pr 97.5 2E-06 4.4E-11 94.6 -7.3 108 580-696 182-290 (1096)
175 PRK10536 hypothetical protein; 97.5 0.0006 1.3E-08 68.3 10.2 135 161-301 55-213 (262)
176 TIGR02639 ClpA ATP-dependent C 97.5 0.0027 5.9E-08 75.7 17.5 117 161-289 454-580 (731)
177 COG0593 DnaA ATPase involved i 97.5 0.0024 5.3E-08 68.6 15.2 156 162-335 89-259 (408)
178 TIGR01241 FtsH_fam ATP-depende 97.5 0.001 2.2E-08 75.7 13.2 179 158-361 52-260 (495)
179 PF10443 RNA12: RNA12 protein; 97.5 0.006 1.3E-07 65.3 17.8 290 166-484 1-378 (431)
180 PF12799 LRR_4: Leucine Rich r 97.5 0.00012 2.6E-09 51.9 3.3 35 585-620 1-35 (44)
181 TIGR02640 gas_vesic_GvpN gas v 97.5 0.0016 3.5E-08 67.3 13.1 117 170-300 11-160 (262)
182 COG5238 RNA1 Ran GTPase-activa 97.5 4.4E-05 9.5E-10 74.7 1.3 191 581-799 26-252 (388)
183 PF13177 DNA_pol3_delta2: DNA 97.4 0.00091 2E-08 63.5 10.2 137 166-320 2-161 (162)
184 TIGR03346 chaperone_ClpB ATP-d 97.4 0.005 1.1E-07 74.7 18.9 131 161-300 565-717 (852)
185 PRK15386 type III secretion pr 97.4 0.00023 4.9E-09 76.2 6.2 139 552-720 46-188 (426)
186 PF04665 Pox_A32: Poxvirus A32 97.4 0.00083 1.8E-08 67.0 9.7 110 185-300 14-137 (241)
187 KOG3665 ZYG-1-like serine/thre 97.4 7.8E-05 1.7E-09 86.7 2.5 152 585-744 122-282 (699)
188 PRK10865 protein disaggregatio 97.4 0.0016 3.5E-08 78.5 13.8 130 161-300 568-720 (857)
189 PRK12377 putative replication 97.4 0.00083 1.8E-08 68.0 9.5 100 184-299 101-204 (248)
190 PRK07952 DNA replication prote 97.4 0.00071 1.5E-08 68.4 8.9 115 171-300 86-204 (244)
191 COG1222 RPT1 ATP-dependent 26S 97.4 0.0046 1E-07 63.7 14.5 179 159-363 149-359 (406)
192 COG1373 Predicted ATPase (AAA+ 97.4 0.0038 8.2E-08 68.5 15.1 119 186-328 39-162 (398)
193 COG0466 Lon ATP-dependent Lon 97.3 0.0012 2.6E-08 73.9 10.9 161 159-334 321-509 (782)
194 PRK07993 DNA polymerase III su 97.3 0.007 1.5E-07 64.6 16.4 179 170-367 11-204 (334)
195 PF00158 Sigma54_activat: Sigm 97.3 0.00043 9.4E-09 65.9 6.4 131 163-300 1-143 (168)
196 COG0470 HolB ATPase involved i 97.3 0.002 4.4E-08 69.4 12.5 142 162-319 2-167 (325)
197 PRK08181 transposase; Validate 97.3 0.00033 7.1E-09 71.9 5.9 99 185-300 107-208 (269)
198 TIGR01243 CDC48 AAA family ATP 97.3 0.0028 6.1E-08 75.9 14.3 180 159-363 176-383 (733)
199 PRK06964 DNA polymerase III su 97.3 0.0061 1.3E-07 64.8 15.1 94 261-368 131-226 (342)
200 COG0542 clpA ATP-binding subun 97.3 0.01 2.2E-07 68.7 17.6 115 161-289 491-620 (786)
201 PRK13531 regulatory ATPase Rav 97.3 0.001 2.2E-08 72.7 9.2 151 162-332 21-193 (498)
202 PRK10787 DNA-binding ATP-depen 97.3 0.0016 3.5E-08 77.3 11.6 162 160-333 321-506 (784)
203 KOG0991 Replication factor C, 97.3 0.0011 2.4E-08 63.7 8.1 102 161-285 27-136 (333)
204 PF02562 PhoH: PhoH-like prote 97.3 0.0011 2.4E-08 64.6 8.5 131 165-301 4-156 (205)
205 COG2812 DnaX DNA polymerase II 97.2 0.0017 3.7E-08 72.0 10.8 189 161-363 16-216 (515)
206 PRK08118 topology modulation p 97.2 0.00014 3E-09 69.4 2.0 34 186-219 3-37 (167)
207 COG1223 Predicted ATPase (AAA+ 97.2 0.0023 5E-08 62.6 10.2 178 158-361 118-319 (368)
208 TIGR01243 CDC48 AAA family ATP 97.2 0.0057 1.2E-07 73.3 16.1 178 160-362 452-658 (733)
209 KOG1514 Origin recognition com 97.2 0.0094 2E-07 66.8 16.2 202 160-368 395-622 (767)
210 PRK08939 primosomal protein Dn 97.2 0.00064 1.4E-08 71.5 6.9 118 165-299 135-259 (306)
211 PF07728 AAA_5: AAA domain (dy 97.2 0.00014 3E-09 67.4 1.7 89 187-287 2-90 (139)
212 KOG4579 Leucine-rich repeat (L 97.2 3.3E-05 7.1E-10 67.8 -2.4 101 559-663 28-129 (177)
213 PRK06921 hypothetical protein; 97.2 0.0011 2.5E-08 68.3 8.3 97 184-299 117-223 (266)
214 PRK12608 transcription termina 97.2 0.0022 4.8E-08 68.0 10.4 102 169-273 119-231 (380)
215 KOG1859 Leucine-rich repeat pr 97.2 8.6E-06 1.9E-10 89.9 -7.9 125 611-748 166-290 (1096)
216 PRK06526 transposase; Provisio 97.2 0.00045 9.7E-09 70.6 4.8 100 184-300 98-200 (254)
217 PRK04132 replication factor C 97.1 0.0089 1.9E-07 70.6 15.9 155 192-367 574-731 (846)
218 PRK11034 clpA ATP-dependent Cl 97.1 0.0032 7E-08 74.2 12.2 115 162-288 459-583 (758)
219 PRK08699 DNA polymerase III su 97.1 0.0053 1.2E-07 65.2 12.7 71 261-332 112-184 (325)
220 CHL00095 clpC Clp protease ATP 97.1 0.0017 3.8E-08 78.3 10.2 119 161-289 509-638 (821)
221 TIGR02902 spore_lonB ATP-depen 97.1 0.0019 4.1E-08 73.7 9.9 167 162-334 66-277 (531)
222 KOG0735 AAA+-type ATPase [Post 97.1 0.0035 7.6E-08 69.9 11.1 178 162-361 409-609 (952)
223 PF14532 Sigma54_activ_2: Sigm 97.1 0.00054 1.2E-08 63.3 4.3 106 164-300 1-109 (138)
224 CHL00195 ycf46 Ycf46; Provisio 97.1 0.01 2.2E-07 66.5 14.8 180 161-363 228-431 (489)
225 TIGR01817 nifA Nif-specific re 97.1 0.0029 6.3E-08 72.9 11.0 132 159-300 194-340 (534)
226 KOG0741 AAA+-type ATPase [Post 97.1 0.0075 1.6E-07 65.0 12.8 145 183-357 537-704 (744)
227 TIGR03345 VI_ClpV1 type VI sec 97.0 0.0019 4.1E-08 77.7 9.4 121 160-289 565-695 (852)
228 KOG0733 Nuclear AAA ATPase (VC 97.0 0.015 3.3E-07 64.0 14.9 177 160-361 189-396 (802)
229 PRK07261 topology modulation p 97.0 0.0017 3.6E-08 62.4 7.0 66 186-273 2-68 (171)
230 PRK06835 DNA replication prote 97.0 0.0017 3.7E-08 68.8 7.5 101 185-300 184-288 (329)
231 PRK04296 thymidine kinase; Pro 97.0 0.0018 3.9E-08 63.3 7.1 112 185-302 3-117 (190)
232 PLN00020 ribulose bisphosphate 97.0 0.015 3.2E-07 61.1 13.9 72 183-273 147-223 (413)
233 PRK09183 transposase/IS protei 97.0 0.0018 3.8E-08 66.7 7.1 99 185-300 103-205 (259)
234 PF01695 IstB_IS21: IstB-like 96.9 0.0016 3.4E-08 62.9 6.1 100 184-300 47-149 (178)
235 PF07693 KAP_NTPase: KAP famil 96.9 0.035 7.7E-07 59.7 17.5 41 167-207 2-43 (325)
236 PRK09361 radB DNA repair and r 96.9 0.0032 7E-08 63.7 8.7 86 183-272 22-117 (225)
237 COG0542 clpA ATP-binding subun 96.9 0.0019 4E-08 74.6 7.4 156 161-333 170-346 (786)
238 PHA00729 NTP-binding motif con 96.9 0.0043 9.3E-08 61.2 8.9 33 172-206 7-39 (226)
239 TIGR02237 recomb_radB DNA repa 96.9 0.0038 8.3E-08 62.3 8.9 86 183-272 11-107 (209)
240 KOG1644 U2-associated snRNP A' 96.9 0.0012 2.6E-08 62.3 4.6 80 560-646 21-101 (233)
241 KOG0730 AAA+-type ATPase [Post 96.9 0.0073 1.6E-07 67.2 11.2 160 156-334 429-616 (693)
242 COG2607 Predicted ATPase (AAA+ 96.8 0.024 5.1E-07 55.3 13.0 107 159-289 58-167 (287)
243 TIGR02974 phageshock_pspF psp 96.8 0.0056 1.2E-07 65.4 10.0 130 163-300 1-143 (329)
244 KOG2035 Replication factor C, 96.8 0.041 8.9E-07 54.8 14.6 228 163-410 15-282 (351)
245 KOG1969 DNA replication checkp 96.8 0.0037 8.1E-08 70.0 7.8 86 183-287 325-412 (877)
246 PRK11608 pspF phage shock prot 96.7 0.0045 9.8E-08 66.2 8.2 132 162-300 7-150 (326)
247 PF13604 AAA_30: AAA domain; P 96.7 0.011 2.4E-07 58.1 10.3 107 184-300 18-130 (196)
248 KOG0744 AAA+-type ATPase [Post 96.7 0.013 2.9E-07 59.4 10.7 81 184-273 177-261 (423)
249 KOG0733 Nuclear AAA ATPase (VC 96.7 0.013 2.7E-07 64.5 11.4 157 184-361 545-718 (802)
250 PTZ00494 tuzin-like protein; P 96.7 0.13 2.8E-06 55.0 18.3 168 158-333 368-544 (664)
251 cd01393 recA_like RecA is a b 96.7 0.013 2.8E-07 59.4 11.1 88 183-273 18-125 (226)
252 TIGR02012 tigrfam_recA protein 96.7 0.0077 1.7E-07 63.2 9.2 84 182-272 53-143 (321)
253 smart00763 AAA_PrkA PrkA AAA d 96.7 0.0014 3E-08 69.2 3.6 46 162-207 52-101 (361)
254 PRK05022 anaerobic nitric oxid 96.6 0.012 2.6E-07 67.2 11.2 134 160-300 186-331 (509)
255 cd01120 RecA-like_NTPases RecA 96.6 0.011 2.5E-07 56.1 9.5 40 186-227 1-40 (165)
256 cd00983 recA RecA is a bacter 96.6 0.0083 1.8E-07 63.0 9.0 84 182-272 53-143 (325)
257 KOG3665 ZYG-1-like serine/thre 96.6 0.0015 3.2E-08 76.3 3.8 105 609-719 122-230 (699)
258 KOG4579 Leucine-rich repeat (L 96.6 0.0005 1.1E-08 60.6 -0.1 94 551-651 46-140 (177)
259 cd01394 radB RadB. The archaea 96.6 0.0096 2.1E-07 59.9 9.3 43 183-227 18-60 (218)
260 COG1484 DnaC DNA replication p 96.6 0.0054 1.2E-07 62.7 7.3 80 184-279 105-184 (254)
261 cd00544 CobU Adenosylcobinamid 96.6 0.039 8.5E-07 52.5 12.6 77 187-271 2-82 (169)
262 cd01123 Rad51_DMC1_radA Rad51_ 96.6 0.0081 1.8E-07 61.3 8.6 89 183-272 18-125 (235)
263 PRK09354 recA recombinase A; P 96.6 0.01 2.3E-07 62.8 9.4 84 182-272 58-148 (349)
264 PF13207 AAA_17: AAA domain; P 96.6 0.0016 3.5E-08 58.5 3.0 21 186-206 1-21 (121)
265 KOG4341 F-box protein containi 96.5 0.00014 3E-09 75.8 -4.7 283 529-827 138-439 (483)
266 KOG2228 Origin recognition com 96.5 0.057 1.2E-06 55.4 13.7 171 161-333 24-219 (408)
267 COG4608 AppF ABC-type oligopep 96.5 0.017 3.7E-07 58.0 9.7 123 184-309 39-178 (268)
268 PF00448 SRP54: SRP54-type pro 96.4 0.012 2.7E-07 57.5 8.4 87 184-272 1-93 (196)
269 PRK07132 DNA polymerase III su 96.4 0.17 3.6E-06 53.1 16.9 152 183-366 17-184 (299)
270 PF13671 AAA_33: AAA domain; P 96.4 0.024 5.1E-07 52.6 9.6 21 186-206 1-21 (143)
271 KOG0728 26S proteasome regulat 96.3 0.14 3E-06 50.1 14.6 149 165-333 151-331 (404)
272 PRK11388 DNA-binding transcrip 96.3 0.021 4.5E-07 67.6 11.3 119 161-289 325-443 (638)
273 cd01133 F1-ATPase_beta F1 ATP 96.3 0.013 2.7E-07 59.9 8.1 87 185-273 70-174 (274)
274 KOG2739 Leucine-rich acidic nu 96.3 0.0025 5.4E-08 63.0 2.8 38 583-620 63-102 (260)
275 COG1875 NYN ribonuclease and A 96.3 0.019 4.1E-07 59.5 9.1 130 165-300 228-387 (436)
276 PRK10733 hflB ATP-dependent me 96.3 0.03 6.5E-07 65.6 12.2 154 162-334 153-336 (644)
277 PF12061 DUF3542: Protein of u 96.3 0.011 2.5E-07 59.3 7.3 77 5-83 297-374 (402)
278 PF05659 RPW8: Arabidopsis bro 96.3 0.041 8.9E-07 50.6 10.5 109 2-126 7-115 (147)
279 cd01131 PilT Pilus retraction 96.3 0.012 2.5E-07 58.1 7.5 112 185-305 2-113 (198)
280 PRK15429 formate hydrogenlyase 96.3 0.015 3.2E-07 69.3 9.7 133 161-300 376-520 (686)
281 PRK11889 flhF flagellar biosyn 96.3 0.061 1.3E-06 57.5 13.0 103 183-287 240-347 (436)
282 PRK15455 PrkA family serine pr 96.3 0.0036 7.7E-08 69.5 3.9 45 162-206 77-125 (644)
283 PRK05541 adenylylsulfate kinas 96.2 0.008 1.7E-07 58.1 6.0 36 183-220 6-41 (176)
284 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.2 0.037 8E-07 51.4 10.0 105 184-305 26-131 (144)
285 PF07724 AAA_2: AAA domain (Cd 96.2 0.0047 1E-07 59.0 4.0 90 184-287 3-104 (171)
286 KOG2739 Leucine-rich acidic nu 96.2 0.0025 5.5E-08 62.9 2.2 110 583-695 41-153 (260)
287 PLN03186 DNA repair protein RA 96.2 0.026 5.7E-07 60.1 10.0 70 172-242 111-184 (342)
288 COG1126 GlnQ ABC-type polar am 96.2 0.054 1.2E-06 52.3 10.8 122 184-308 28-203 (240)
289 cd03216 ABC_Carb_Monos_I This 96.2 0.015 3.2E-07 55.4 7.3 113 185-304 27-145 (163)
290 KOG0727 26S proteasome regulat 96.2 0.024 5.1E-07 55.3 8.5 47 161-207 155-212 (408)
291 PRK06067 flagellar accessory p 96.2 0.037 8.1E-07 56.3 10.7 93 175-272 16-130 (234)
292 COG4618 ArpD ABC-type protease 96.2 0.015 3.2E-07 62.9 7.8 22 185-206 363-384 (580)
293 KOG0731 AAA+-type ATPase conta 96.2 0.088 1.9E-06 60.8 14.4 180 160-363 310-520 (774)
294 TIGR03877 thermo_KaiC_1 KaiC d 96.2 0.039 8.5E-07 56.2 10.8 58 174-235 11-68 (237)
295 KOG1644 U2-associated snRNP A' 96.2 0.0067 1.4E-07 57.5 4.6 91 678-771 57-149 (233)
296 cd03238 ABC_UvrA The excision 96.1 0.033 7.1E-07 53.5 9.4 112 184-305 21-153 (176)
297 PHA02244 ATPase-like protein 96.1 0.024 5.2E-07 60.1 9.1 118 162-300 97-230 (383)
298 cd03247 ABCC_cytochrome_bd The 96.1 0.038 8.2E-07 53.5 10.0 113 185-305 29-161 (178)
299 PRK06696 uridine kinase; Valid 96.1 0.006 1.3E-07 61.5 4.5 41 166-206 3-44 (223)
300 COG0714 MoxR-like ATPases [Gen 96.1 0.0086 1.9E-07 64.4 6.0 109 162-288 25-138 (329)
301 PRK04301 radA DNA repair and r 96.1 0.025 5.5E-07 60.3 9.4 68 172-240 90-161 (317)
302 KOG4341 F-box protein containi 96.1 0.00037 7.9E-09 72.8 -4.4 263 526-803 161-440 (483)
303 cd03223 ABCD_peroxisomal_ALDP 96.1 0.052 1.1E-06 51.8 10.5 117 184-305 27-152 (166)
304 PRK07667 uridine kinase; Provi 96.0 0.0085 1.8E-07 58.8 5.0 37 170-206 3-39 (193)
305 TIGR03499 FlhF flagellar biosy 96.0 0.025 5.4E-07 59.1 8.7 86 184-271 194-281 (282)
306 PRK00625 shikimate kinase; Pro 96.0 0.05 1.1E-06 52.1 10.1 21 186-206 2-22 (173)
307 KOG0734 AAA+-type ATPase conta 96.0 0.02 4.4E-07 61.9 7.9 48 161-208 304-361 (752)
308 PRK05800 cobU adenosylcobinami 96.0 0.096 2.1E-06 50.0 11.9 79 186-271 3-85 (170)
309 cd03281 ABC_MSH5_euk MutS5 hom 96.0 0.014 3E-07 58.3 6.3 119 184-307 29-160 (213)
310 PLN03187 meiotic recombination 96.0 0.043 9.4E-07 58.4 10.2 96 176-272 118-231 (344)
311 TIGR02239 recomb_RAD51 DNA rep 96.0 0.04 8.7E-07 58.4 10.0 69 172-241 84-156 (316)
312 COG1618 Predicted nucleotide k 96.0 0.007 1.5E-07 55.2 3.6 23 185-207 6-28 (179)
313 TIGR02238 recomb_DMC1 meiotic 95.9 0.044 9.5E-07 57.9 10.1 99 173-272 85-201 (313)
314 cd01122 GP4d_helicase GP4d_hel 95.9 0.078 1.7E-06 55.3 12.1 53 184-239 30-82 (271)
315 PRK12724 flagellar biosynthesi 95.9 0.075 1.6E-06 57.6 11.8 23 184-206 223-245 (432)
316 cd03115 SRP The signal recogni 95.9 0.063 1.4E-06 51.7 10.4 99 186-286 2-108 (173)
317 PRK06762 hypothetical protein; 95.9 0.025 5.3E-07 54.1 7.4 23 184-206 2-24 (166)
318 PRK00771 signal recognition pa 95.9 0.094 2E-06 57.9 12.7 88 183-273 94-186 (437)
319 TIGR01359 UMP_CMP_kin_fam UMP- 95.9 0.063 1.4E-06 52.3 10.3 21 186-206 1-21 (183)
320 COG1136 SalX ABC-type antimicr 95.8 0.097 2.1E-06 51.7 11.3 125 185-309 32-211 (226)
321 PRK12723 flagellar biosynthesi 95.8 0.12 2.6E-06 56.1 13.1 103 183-287 173-281 (388)
322 PF08423 Rad51: Rad51; InterP 95.8 0.038 8.3E-07 56.7 8.9 88 184-272 38-143 (256)
323 PRK14722 flhF flagellar biosyn 95.8 0.029 6.3E-07 60.2 8.1 86 184-273 137-226 (374)
324 PRK08533 flagellar accessory p 95.8 0.046 1E-06 55.2 9.1 112 184-300 24-162 (230)
325 COG0464 SpoVK ATPases of the A 95.7 0.099 2.2E-06 59.8 12.9 155 161-334 242-424 (494)
326 cd00561 CobA_CobO_BtuR ATP:cor 95.7 0.077 1.7E-06 49.6 9.7 114 185-301 3-138 (159)
327 PRK10820 DNA-binding transcrip 95.7 0.023 5E-07 65.0 7.6 132 161-300 204-348 (520)
328 smart00534 MUTSac ATPase domai 95.7 0.0079 1.7E-07 58.6 3.3 118 186-308 1-129 (185)
329 cd03222 ABC_RNaseL_inhibitor T 95.7 0.065 1.4E-06 51.5 9.5 101 184-305 25-136 (177)
330 COG0468 RecA RecA/RadA recombi 95.7 0.054 1.2E-06 55.6 9.3 89 182-273 58-152 (279)
331 cd01121 Sms Sms (bacterial rad 95.7 0.066 1.4E-06 58.0 10.5 94 172-273 70-169 (372)
332 COG1124 DppF ABC-type dipeptid 95.7 0.042 9.1E-07 54.1 7.9 125 184-308 33-209 (252)
333 PRK13695 putative NTPase; Prov 95.7 0.013 2.8E-07 56.5 4.6 22 186-207 2-23 (174)
334 PRK14974 cell division protein 95.7 0.086 1.9E-06 56.1 11.0 100 183-285 139-247 (336)
335 PTZ00035 Rad51 protein; Provis 95.7 0.079 1.7E-06 56.7 10.8 100 172-272 106-223 (337)
336 TIGR02329 propionate_PrpR prop 95.7 0.022 4.8E-07 64.6 7.0 129 161-300 212-357 (526)
337 cd03230 ABC_DR_subfamily_A Thi 95.6 0.062 1.3E-06 51.7 9.2 116 184-305 26-159 (173)
338 TIGR02236 recomb_radA DNA repa 95.6 0.054 1.2E-06 57.8 9.5 65 175-240 86-154 (310)
339 cd03246 ABCC_Protease_Secretio 95.6 0.051 1.1E-06 52.3 8.5 117 185-305 29-160 (173)
340 KOG0735 AAA+-type ATPase [Post 95.6 0.16 3.5E-06 57.3 13.0 178 161-363 667-872 (952)
341 TIGR01818 ntrC nitrogen regula 95.6 0.06 1.3E-06 61.2 10.3 129 162-300 135-278 (463)
342 TIGR00064 ftsY signal recognit 95.6 0.11 2.3E-06 53.9 11.2 88 183-273 71-165 (272)
343 PRK15424 propionate catabolism 95.6 0.023 5E-07 64.4 6.6 129 161-300 219-372 (538)
344 PRK05703 flhF flagellar biosyn 95.5 0.088 1.9E-06 58.2 10.9 102 184-287 221-326 (424)
345 KOG1051 Chaperone HSP104 and r 95.5 0.064 1.4E-06 63.3 10.1 118 161-288 562-686 (898)
346 cd03228 ABCC_MRP_Like The MRP 95.5 0.1 2.2E-06 50.2 10.1 116 184-306 28-160 (171)
347 PRK04328 hypothetical protein; 95.5 0.07 1.5E-06 54.7 9.5 41 183-225 22-62 (249)
348 cd03214 ABC_Iron-Siderophores_ 95.5 0.096 2.1E-06 50.8 10.0 117 184-304 25-161 (180)
349 PF12775 AAA_7: P-loop contain 95.5 0.015 3.2E-07 60.2 4.5 89 171-273 23-111 (272)
350 PRK10867 signal recognition pa 95.5 0.062 1.3E-06 59.1 9.4 24 183-206 99-122 (433)
351 PF13238 AAA_18: AAA domain; P 95.5 0.0096 2.1E-07 54.1 2.7 21 187-207 1-21 (129)
352 COG2884 FtsE Predicted ATPase 95.5 0.088 1.9E-06 49.7 8.9 122 184-309 28-205 (223)
353 COG1121 ZnuC ABC-type Mn/Zn tr 95.5 0.071 1.5E-06 53.6 8.9 117 185-302 31-200 (254)
354 PF03215 Rad17: Rad17 cell cyc 95.5 0.12 2.7E-06 58.3 11.9 57 161-221 19-78 (519)
355 PRK15115 response regulator Gl 95.4 0.15 3.2E-06 57.6 12.8 131 162-300 135-278 (444)
356 PRK14721 flhF flagellar biosyn 95.4 0.22 4.8E-06 54.5 13.3 23 184-206 191-213 (420)
357 PRK13948 shikimate kinase; Pro 95.4 0.15 3.3E-06 49.2 10.8 24 183-206 9-32 (182)
358 COG2842 Uncharacterized ATPase 95.4 0.13 2.8E-06 52.3 10.4 119 160-286 71-189 (297)
359 TIGR03881 KaiC_arch_4 KaiC dom 95.3 0.13 2.8E-06 52.1 10.8 47 183-233 19-65 (229)
360 TIGR02858 spore_III_AA stage I 95.3 0.23 5E-06 51.2 12.5 125 169-305 97-233 (270)
361 cd00267 ABC_ATPase ABC (ATP-bi 95.3 0.06 1.3E-06 50.9 7.7 115 185-306 26-145 (157)
362 TIGR00959 ffh signal recogniti 95.3 0.057 1.2E-06 59.4 8.4 24 183-206 98-121 (428)
363 PRK09270 nucleoside triphospha 95.3 0.081 1.8E-06 53.6 9.1 26 181-206 30-55 (229)
364 KOG0743 AAA+-type ATPase [Post 95.3 0.32 6.8E-06 52.5 13.4 154 185-374 236-417 (457)
365 KOG2123 Uncharacterized conser 95.3 0.0013 2.8E-08 65.0 -4.0 63 554-622 37-101 (388)
366 cd02019 NK Nucleoside/nucleoti 95.2 0.013 2.9E-07 46.4 2.5 21 186-206 1-21 (69)
367 cd03217 ABC_FeS_Assembly ABC-t 95.2 0.1 2.2E-06 51.6 9.3 119 184-305 26-168 (200)
368 PF00154 RecA: recA bacterial 95.2 0.06 1.3E-06 56.5 7.8 84 183-273 52-142 (322)
369 COG0563 Adk Adenylate kinase a 95.2 0.042 9E-07 52.8 6.1 22 186-207 2-23 (178)
370 KOG0924 mRNA splicing factor A 95.2 0.12 2.6E-06 57.6 10.1 113 184-301 371-510 (1042)
371 PRK05917 DNA polymerase III su 95.2 0.33 7.1E-06 50.3 13.0 130 170-320 6-154 (290)
372 PRK13949 shikimate kinase; Pro 95.2 0.13 2.9E-06 49.1 9.6 22 186-207 3-24 (169)
373 TIGR00390 hslU ATP-dependent p 95.2 0.043 9.4E-07 59.1 6.7 47 161-207 12-70 (441)
374 PRK09519 recA DNA recombinatio 95.2 0.1 2.2E-06 61.3 10.2 94 172-272 47-148 (790)
375 PF07726 AAA_3: ATPase family 95.1 0.015 3.3E-07 51.4 2.7 98 187-301 2-112 (131)
376 PRK12726 flagellar biosynthesi 95.1 0.11 2.4E-06 55.3 9.5 101 183-285 205-310 (407)
377 PRK11823 DNA repair protein Ra 95.1 0.14 3.1E-06 57.2 10.9 94 171-272 67-166 (446)
378 PRK06547 hypothetical protein; 95.1 0.029 6.2E-07 53.7 4.7 25 183-207 14-38 (172)
379 COG1120 FepC ABC-type cobalami 95.1 0.16 3.4E-06 51.5 10.0 124 184-307 28-205 (258)
380 COG4088 Predicted nucleotide k 95.1 0.18 3.9E-06 48.1 9.6 22 185-206 2-23 (261)
381 KOG1532 GTPase XAB1, interacts 95.0 0.11 2.4E-06 51.6 8.5 25 183-207 18-42 (366)
382 PRK08233 hypothetical protein; 95.0 0.019 4.1E-07 55.8 3.4 24 184-207 3-26 (182)
383 PRK12727 flagellar biosynthesi 95.0 0.068 1.5E-06 59.5 7.9 88 184-273 350-439 (559)
384 PRK10923 glnG nitrogen regulat 95.0 0.046 9.9E-07 62.2 7.0 132 162-300 139-282 (469)
385 PTZ00301 uridine kinase; Provi 95.0 0.033 7.2E-07 55.1 5.1 23 184-206 3-25 (210)
386 TIGR00708 cobA cob(I)alamin ad 95.0 0.12 2.7E-06 48.8 8.5 114 184-301 5-140 (173)
387 PRK00279 adk adenylate kinase; 95.0 0.18 3.9E-06 50.5 10.4 21 186-206 2-22 (215)
388 cd02027 APSK Adenosine 5'-phos 95.0 0.19 4E-06 47.0 9.8 21 186-206 1-21 (149)
389 PRK06002 fliI flagellum-specif 95.0 0.1 2.2E-06 57.2 9.1 87 184-273 165-265 (450)
390 PF00485 PRK: Phosphoribulokin 95.0 0.017 3.7E-07 56.8 3.0 21 186-206 1-21 (194)
391 PRK05480 uridine/cytidine kina 95.0 0.02 4.4E-07 57.1 3.5 24 183-206 5-28 (209)
392 PF03308 ArgK: ArgK protein; 95.0 0.035 7.6E-07 55.5 4.9 39 169-207 14-52 (266)
393 TIGR00150 HI0065_YjeE ATPase, 94.9 0.029 6.3E-07 50.6 4.0 39 169-207 7-45 (133)
394 KOG0736 Peroxisome assembly fa 94.9 0.082 1.8E-06 60.1 8.2 94 161-273 672-775 (953)
395 COG1102 Cmk Cytidylate kinase 94.9 0.029 6.3E-07 51.3 3.8 44 186-242 2-45 (179)
396 KOG0729 26S proteasome regulat 94.9 0.04 8.6E-07 54.2 5.0 92 161-272 177-280 (435)
397 PRK13543 cytochrome c biogenes 94.8 0.25 5.4E-06 49.4 11.0 24 184-207 37-60 (214)
398 KOG1947 Leucine rich repeat pr 94.8 0.0029 6.3E-08 72.4 -3.5 89 555-644 185-280 (482)
399 TIGR00235 udk uridine kinase. 94.8 0.025 5.5E-07 56.2 3.7 24 183-206 5-28 (207)
400 cd03282 ABC_MSH4_euk MutS4 hom 94.8 0.044 9.5E-07 54.1 5.3 119 184-308 29-158 (204)
401 PF00006 ATP-synt_ab: ATP synt 94.8 0.07 1.5E-06 52.9 6.7 94 173-273 5-116 (215)
402 PF01583 APS_kinase: Adenylyls 94.8 0.044 9.5E-07 51.0 4.9 36 184-221 2-37 (156)
403 cd03287 ABC_MSH3_euk MutS3 hom 94.8 0.047 1E-06 54.5 5.5 119 184-307 31-160 (222)
404 cd03215 ABC_Carb_Monos_II This 94.8 0.1 2.2E-06 50.7 7.7 50 255-304 115-167 (182)
405 PTZ00088 adenylate kinase 1; P 94.8 0.027 5.8E-07 56.6 3.7 20 187-206 9-28 (229)
406 PF00910 RNA_helicase: RNA hel 94.7 0.016 3.5E-07 50.6 1.8 21 187-207 1-21 (107)
407 PRK05201 hslU ATP-dependent pr 94.7 0.055 1.2E-06 58.4 6.1 46 161-206 15-72 (443)
408 cd03243 ABC_MutS_homologs The 94.7 0.034 7.3E-07 55.1 4.3 22 185-206 30-51 (202)
409 COG1643 HrpA HrpA-like helicas 94.7 0.15 3.2E-06 60.5 10.1 127 168-300 53-204 (845)
410 TIGR01420 pilT_fam pilus retra 94.7 0.15 3.2E-06 55.0 9.5 110 184-302 122-231 (343)
411 PRK03839 putative kinase; Prov 94.7 0.022 4.8E-07 55.3 2.9 22 186-207 2-23 (180)
412 TIGR00382 clpX endopeptidase C 94.7 0.12 2.5E-06 56.6 8.6 47 160-206 76-138 (413)
413 TIGR03878 thermo_KaiC_2 KaiC d 94.7 0.19 4.2E-06 51.8 10.0 40 183-224 35-74 (259)
414 TIGR00416 sms DNA repair prote 94.7 0.2 4.3E-06 56.0 10.7 53 170-224 80-132 (454)
415 TIGR03771 anch_rpt_ABC anchore 94.7 0.23 4.9E-06 50.1 10.3 51 254-304 123-176 (223)
416 COG2274 SunT ABC-type bacterio 94.7 0.19 4.2E-06 59.0 10.9 51 254-304 619-672 (709)
417 TIGR01650 PD_CobS cobaltochela 94.7 0.061 1.3E-06 56.4 6.1 106 163-281 47-153 (327)
418 KOG3347 Predicted nucleotide k 94.7 0.045 9.8E-07 49.2 4.4 105 184-309 7-112 (176)
419 TIGR02915 PEP_resp_reg putativ 94.6 0.068 1.5E-06 60.4 7.1 128 162-300 140-283 (445)
420 cd01135 V_A-ATPase_B V/A-type 94.6 0.11 2.5E-06 52.9 7.7 89 185-273 70-177 (276)
421 cd03232 ABC_PDR_domain2 The pl 94.6 0.16 3.5E-06 49.8 8.8 23 184-206 33-55 (192)
422 PRK04040 adenylate kinase; Pro 94.6 0.026 5.7E-07 54.9 3.1 23 184-206 2-24 (188)
423 COG0467 RAD55 RecA-superfamily 94.6 0.092 2E-06 54.4 7.4 51 182-236 21-71 (260)
424 TIGR01069 mutS2 MutS2 family p 94.6 0.043 9.4E-07 65.3 5.5 189 184-390 322-522 (771)
425 cd03229 ABC_Class3 This class 94.6 0.098 2.1E-06 50.6 7.1 118 184-305 26-165 (178)
426 PRK07276 DNA polymerase III su 94.6 1.1 2.4E-05 46.6 15.0 70 260-331 102-173 (290)
427 COG4181 Predicted ABC-type tra 94.6 0.59 1.3E-05 43.4 11.3 125 185-309 37-215 (228)
428 PRK10463 hydrogenase nickel in 94.5 0.086 1.9E-06 54.4 6.7 85 183-273 103-195 (290)
429 TIGR01360 aden_kin_iso1 adenyl 94.5 0.03 6.6E-07 54.7 3.4 24 183-206 2-25 (188)
430 cd03240 ABC_Rad50 The catalyti 94.5 0.42 9.1E-06 47.3 11.5 53 254-306 131-188 (204)
431 cd01129 PulE-GspE PulE/GspE Th 94.5 0.12 2.5E-06 53.5 7.7 106 164-282 62-167 (264)
432 TIGR02655 circ_KaiC circadian 94.5 0.17 3.6E-06 57.4 9.7 97 171-272 250-363 (484)
433 TIGR03574 selen_PSTK L-seryl-t 94.5 0.067 1.4E-06 55.0 6.0 21 187-207 2-22 (249)
434 TIGR03600 phage_DnaB phage rep 94.5 2.2 4.9E-05 47.6 18.6 55 184-241 194-248 (421)
435 KOG0739 AAA+-type ATPase [Post 94.5 0.56 1.2E-05 47.4 11.8 175 161-361 133-335 (439)
436 COG1428 Deoxynucleoside kinase 94.5 0.025 5.5E-07 54.4 2.5 24 184-207 4-27 (216)
437 cd02025 PanK Pantothenate kina 94.5 0.16 3.4E-06 50.9 8.4 21 186-206 1-21 (220)
438 PRK05439 pantothenate kinase; 94.5 0.19 4E-06 52.7 9.1 25 182-206 84-108 (311)
439 COG1066 Sms Predicted ATP-depe 94.5 0.3 6.4E-06 52.0 10.4 82 183-273 92-179 (456)
440 TIGR00991 3a0901s02IAP34 GTP-b 94.4 0.034 7.3E-07 57.7 3.6 39 169-207 23-61 (313)
441 COG1703 ArgK Putative periplas 94.4 0.049 1.1E-06 55.2 4.6 63 170-232 37-99 (323)
442 cd01125 repA Hexameric Replica 94.4 0.17 3.8E-06 51.5 8.8 116 186-301 3-159 (239)
443 PF05970 PIF1: PIF1-like helic 94.4 0.15 3.3E-06 55.5 8.8 34 172-207 12-45 (364)
444 PF00560 LRR_1: Leucine Rich R 94.4 0.016 3.5E-07 34.0 0.7 17 587-604 2-18 (22)
445 PRK00409 recombination and DNA 94.4 0.031 6.8E-07 66.7 3.7 190 183-390 326-527 (782)
446 KOG2123 Uncharacterized conser 94.4 0.0033 7.2E-08 62.2 -3.7 101 608-715 18-123 (388)
447 COG1936 Predicted nucleotide k 94.4 0.032 6.9E-07 51.8 2.8 20 186-205 2-21 (180)
448 PF08298 AAA_PrkA: PrkA AAA do 94.4 0.046 1E-06 57.3 4.4 46 161-206 61-110 (358)
449 cd03283 ABC_MutS-like MutS-lik 94.3 0.14 2.9E-06 50.5 7.5 22 185-206 26-47 (199)
450 PRK10875 recD exonuclease V su 94.3 0.2 4.4E-06 57.9 9.9 114 185-302 168-303 (615)
451 PF08433 KTI12: Chromatin asso 94.3 0.075 1.6E-06 54.8 5.8 23 185-207 2-24 (270)
452 cd03284 ABC_MutS1 MutS1 homolo 94.3 0.08 1.7E-06 52.9 5.8 21 185-205 31-51 (216)
453 COG1419 FlhF Flagellar GTP-bin 94.2 0.63 1.4E-05 49.9 12.6 105 184-290 203-311 (407)
454 PRK12597 F0F1 ATP synthase sub 94.2 0.13 2.7E-06 56.9 7.7 88 185-273 144-248 (461)
455 PF13481 AAA_25: AAA domain; P 94.2 0.19 4.2E-06 49.3 8.4 41 185-225 33-81 (193)
456 COG0572 Udk Uridine kinase [Nu 94.2 0.041 9E-07 53.7 3.4 24 183-206 7-30 (218)
457 KOG0726 26S proteasome regulat 94.2 0.15 3.2E-06 51.2 7.1 48 160-207 184-242 (440)
458 COG0396 sufC Cysteine desulfur 94.2 0.57 1.2E-05 45.9 10.9 60 252-311 152-214 (251)
459 TIGR01425 SRP54_euk signal rec 94.2 0.17 3.7E-06 55.4 8.5 24 183-206 99-122 (429)
460 cd03285 ABC_MSH2_euk MutS2 hom 94.2 0.076 1.7E-06 53.3 5.4 119 184-308 30-160 (222)
461 COG3640 CooC CO dehydrogenase 94.2 0.16 3.6E-06 49.6 7.3 66 186-259 2-67 (255)
462 PRK08927 fliI flagellum-specif 94.1 0.16 3.5E-06 55.7 8.2 86 184-273 158-259 (442)
463 PRK08972 fliI flagellum-specif 94.1 0.14 3.1E-06 55.9 7.7 85 185-273 163-263 (444)
464 PRK06995 flhF flagellar biosyn 94.1 0.17 3.6E-06 56.4 8.4 87 184-272 256-344 (484)
465 PRK13765 ATP-dependent proteas 94.1 0.073 1.6E-06 61.6 5.7 77 160-242 30-106 (637)
466 PRK09544 znuC high-affinity zi 94.1 0.38 8.2E-06 49.4 10.5 24 184-207 30-53 (251)
467 cd03213 ABCG_EPDR ABCG transpo 94.1 0.31 6.7E-06 47.8 9.5 116 184-301 35-171 (194)
468 PF06745 KaiC: KaiC; InterPro 94.1 0.088 1.9E-06 53.2 5.8 85 183-271 18-124 (226)
469 COG2019 AdkA Archaeal adenylat 94.1 0.045 9.7E-07 50.3 3.1 23 184-206 4-26 (189)
470 PRK15056 manganese/iron transp 94.1 0.32 6.9E-06 50.7 10.1 23 184-206 33-55 (272)
471 PRK14738 gmk guanylate kinase; 94.1 0.045 9.7E-07 54.4 3.5 28 179-206 8-35 (206)
472 PF03969 AFG1_ATPase: AFG1-lik 94.0 0.064 1.4E-06 57.8 4.9 100 183-300 61-166 (362)
473 COG0465 HflB ATP-dependent Zn 94.0 0.38 8.2E-06 54.5 11.0 181 158-363 147-357 (596)
474 TIGR02322 phosphon_PhnN phosph 94.0 0.04 8.8E-07 53.4 3.0 23 185-207 2-24 (179)
475 TIGR00764 lon_rel lon-related 94.0 0.098 2.1E-06 60.7 6.5 76 160-242 17-93 (608)
476 KOG0736 Peroxisome assembly fa 93.9 0.73 1.6E-05 52.8 12.8 176 163-363 403-600 (953)
477 PRK09280 F0F1 ATP synthase sub 93.9 0.21 4.6E-06 55.0 8.7 88 185-273 145-249 (463)
478 PF10236 DAP3: Mitochondrial r 93.9 0.6 1.3E-05 49.4 11.9 49 314-364 258-306 (309)
479 KOG2170 ATPase of the AAA+ sup 93.9 0.16 3.5E-06 51.5 6.9 112 163-287 84-203 (344)
480 cd03244 ABCC_MRP_domain2 Domai 93.9 0.46 9.9E-06 47.8 10.6 23 184-206 30-52 (221)
481 cd02023 UMPK Uridine monophosp 93.9 0.036 7.7E-07 54.8 2.5 21 186-206 1-21 (198)
482 KOG0652 26S proteasome regulat 93.9 0.94 2E-05 44.8 11.9 46 161-206 171-227 (424)
483 PF13245 AAA_19: Part of AAA d 93.9 0.092 2E-06 42.4 4.3 22 184-205 10-31 (76)
484 PRK00131 aroK shikimate kinase 93.8 0.044 9.5E-07 52.8 2.9 23 184-206 4-26 (175)
485 cd01136 ATPase_flagellum-secre 93.8 0.26 5.6E-06 52.1 8.8 85 185-273 70-170 (326)
486 PF03266 NTPase_1: NTPase; In 93.8 0.042 9.2E-07 52.3 2.7 21 187-207 2-22 (168)
487 cd00984 DnaB_C DnaB helicase C 93.8 0.53 1.1E-05 48.1 11.0 53 184-239 13-65 (242)
488 TIGR03796 NHPM_micro_ABC1 NHPM 93.8 0.4 8.8E-06 57.7 11.7 23 184-206 505-527 (710)
489 TIGR01188 drrA daunorubicin re 93.8 0.12 2.6E-06 54.8 6.4 23 184-206 19-41 (302)
490 cd02021 GntK Gluconate kinase 93.8 0.041 9E-07 51.5 2.6 22 186-207 1-22 (150)
491 PRK08149 ATP synthase SpaL; Va 93.8 0.23 5E-06 54.3 8.6 86 184-273 151-252 (428)
492 cd02024 NRK1 Nicotinamide ribo 93.8 0.039 8.5E-07 53.3 2.4 22 186-207 1-22 (187)
493 PRK14531 adenylate kinase; Pro 93.8 0.39 8.5E-06 46.6 9.5 21 186-206 4-24 (183)
494 PLN02318 phosphoribulokinase/u 93.8 0.079 1.7E-06 59.5 4.9 33 174-206 55-87 (656)
495 PRK00889 adenylylsulfate kinas 93.8 0.055 1.2E-06 52.2 3.4 24 184-207 4-27 (175)
496 cd02028 UMPK_like Uridine mono 93.8 0.063 1.4E-06 51.9 3.8 21 186-206 1-21 (179)
497 KOG0730 AAA+-type ATPase [Post 93.7 0.51 1.1E-05 53.1 11.1 175 162-361 185-386 (693)
498 cd00227 CPT Chloramphenicol (C 93.7 0.045 9.8E-07 52.8 2.8 23 185-207 3-25 (175)
499 KOG0927 Predicted transporter 93.7 0.77 1.7E-05 50.6 12.1 135 164-300 397-565 (614)
500 PRK12678 transcription termina 93.7 0.14 3E-06 57.1 6.7 97 172-273 405-514 (672)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-90 Score=805.24 Aligned_cols=796 Identities=28% Similarity=0.410 Sum_probs=615.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHhhhhhhhhc
Q 003086 2 ADAVVQIFLERLLITLTEQTGYVNEFRDQFERLQSELQFMQSFLADADRLKRKRNSQTLRTFMAELRELIYEAEDILADC 81 (849)
Q Consensus 2 A~~~v~~~~~kl~~~l~~~~~~~~~~~~~~~~L~~~L~~i~~~l~~a~~~~~~~~~~~~~~wl~~lr~~~yd~ed~ld~~ 81 (849)
|++.+++.++|+.+++.+++..+.++++.+..|++.|..++++++++++++... ..+..|.+.+++++|++||+++.+
T Consensus 1 ~~~~~s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~--~~~~~~~e~~~~~~~~~e~~~~~~ 78 (889)
T KOG4658|consen 1 MGACVSFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDL--ERRVNWEEDVGDLVYLAEDIIWLF 78 (889)
T ss_pred CCeEEEEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788999999999999999999999999999999999999999988777 889999999999999999999999
Q ss_pred ccccccccccccCccc-------ccCCCChhhhhhHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCcccccCCCCCc
Q 003086 82 HLQSRDEDQLSNGWLT-------FLYPPNISFRYQTGKRLREINDKITYIKQNVASFLNVPLFTRTDTMDARNDQMSRWS 154 (849)
Q Consensus 82 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~i~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (849)
.. +...+...+..+ +.+.. .++++.+..+..+.+++..+.+.++.+ +........+.. ..++..++.
T Consensus 79 ~v--~~~~~~~~~~l~~~~~~~~~~c~~--~~~~~~~~~~~~~~~rv~~~l~~ve~l-~~~~~~~~~~~~-~~~~~~~e~ 152 (889)
T KOG4658|consen 79 LV--EEIERKANDLLSTRSVERQRLCLC--GFCSKNVSDSYKYGKRVSKVLREVESL-GSKGVFEVVGES-LDPREKVET 152 (889)
T ss_pred HH--HHHHHHHhHHhhhhHHHHHHHhhh--hhHhHhhhhhHhHHHHHHHHHHHHHHh-ccccceeccccc-ccchhhccc
Confidence 87 433221111111 11111 566777888888888888888888887 544422111100 112223344
Q ss_pred cCCCCCCccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChh-hhcccCceEEEEeCCccCHHHHHH
Q 003086 155 CPVYDHTLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDRE-IENWFERRMWVSVSQTFTEEQIMR 233 (849)
Q Consensus 155 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~~s~~~~~~~~~~ 233 (849)
.|...... ||.+..++++++.|..++. .+++|+||||+||||||+.++|+.. ++.+|+.++||+||+.++...++.
T Consensus 153 ~~~~~~~~-VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~ 229 (889)
T KOG4658|consen 153 RPIQSESD-VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQ 229 (889)
T ss_pred CCCCcccc-ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHH
Confidence 45444445 9999999999999998763 8999999999999999999999977 999999999999999999999999
Q ss_pred HHHHHhcCCCC---CCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEecchhhhhh-cc
Q 003086 234 SMLRNLGDASA---GDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITTRNGKVSQK-MG 308 (849)
Q Consensus 234 ~i~~~l~~~~~---~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTtr~~~v~~~-~~ 308 (849)
+|+..++.... ..+.++++..+.+.|.++||+|||||||+ ..+|+.+..++|... ||||++|||+..|+.. ++
T Consensus 230 ~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~--~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~ 307 (889)
T KOG4658|consen 230 TILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWE--EVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMG 307 (889)
T ss_pred HHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccc--cccHHhcCCCCCCccCCeEEEEEeccHhhhhcccc
Confidence 99999988544 23457889999999999999999999999 778999999999886 8999999999999998 66
Q ss_pred ccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHhhhhhcCCCChHHHHHHHHhh
Q 003086 309 VKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVGGMMLYKPPTYNEWRRTADNF 388 (849)
Q Consensus 309 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l~~~~~~~~~w~~~~~~~ 388 (849)
.. ..+++++|+.+|||+||++.+|....+ ..+.++++|++++++|+|+|||++++|+.|+.|.. .++|+++.+.+
T Consensus 308 ~~--~~~~v~~L~~~eaW~LF~~~v~~~~~~--~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t-~~eW~~~~~~l 382 (889)
T KOG4658|consen 308 VD--YPIEVECLTPEEAWDLFQKKVGPNTLG--SHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKT-VQEWRRALNVL 382 (889)
T ss_pred CC--ccccccccCccccHHHHHHhhcccccc--ccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCc-HHHHHHHHccc
Confidence 53 699999999999999999999876432 44559999999999999999999999999999987 88999999999
Q ss_pred hhhhcc----CCchHHHHHHHhhhCCChhhHHHHHHhccCCCCccccHHHHHHHhHhcCCCcC-CCCCCHHHHHHHHHHh
Q 003086 389 RDELAE----NDDSVMASLQLSYDELPPYLKSCFLSFSVYPEDCVIRKEQLVYWWIGEGFVPQ-RNGRSSIEAGEDCFSG 463 (849)
Q Consensus 389 ~~~~~~----~~~~~~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~wia~g~i~~-~~~~~~e~~~~~~~~~ 463 (849)
.+.+.. ..+.++++|++||+.||+++|.||+|||+||+||.|+++.||.+|+||||+.+ ..+.+++++|++|+.+
T Consensus 383 ~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~ 462 (889)
T KOG4658|consen 383 KSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEE 462 (889)
T ss_pred cccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHH
Confidence 887443 26789999999999999999999999999999999999999999999999987 5578899999999999
Q ss_pred hhhccceEEeccccCCceeeeeecHHHHHHHHHHhh-----cccccCC------------CCCcceeEeeccCcc--hHh
Q 003086 464 LTNRCLVEVVDKAYNKMISTCKIHDMVRDLVIRVAE-----EDAFSKP------------NGLNCRHLGVTSDVE--SKQ 524 (849)
Q Consensus 464 L~~~~ll~~~~~~~~~~~~~~~~Hdlv~~~~~~~~~-----~e~~~~~------------~~~~~r~lsi~~~~~--~~~ 524 (849)
|++++|++..... ++..+|+|||+|||+|+++|+ +|+++.. ++...||+++++... ...
T Consensus 463 LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~ 540 (889)
T KOG4658|consen 463 LVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAG 540 (889)
T ss_pred HHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccC
Confidence 9999999987643 667889999999999999999 6654322 245679998886543 444
Q ss_pred hhhccCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCcc
Q 003086 525 LISNLKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPS 604 (849)
Q Consensus 525 ~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~ 604 (849)
...+++++||++.++.. .+.......|..++.|+||||++|.-. .++|+++++|.|||||+|+++ .+..+|..
T Consensus 541 ~~~~~~L~tLll~~n~~---~l~~is~~ff~~m~~LrVLDLs~~~~l---~~LP~~I~~Li~LryL~L~~t-~I~~LP~~ 613 (889)
T KOG4658|consen 541 SSENPKLRTLLLQRNSD---WLLEISGEFFRSLPLLRVLDLSGNSSL---SKLPSSIGELVHLRYLDLSDT-GISHLPSG 613 (889)
T ss_pred CCCCCccceEEEeecch---hhhhcCHHHHhhCcceEEEECCCCCcc---CcCChHHhhhhhhhcccccCC-CccccchH
Confidence 56778999999988642 122344566899999999999997633 389999999999999999999 89999999
Q ss_pred ccCCCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhcc
Q 003086 605 LKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNL 684 (849)
Q Consensus 605 i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l 684 (849)
+++|..|++||+.++.....+|..+..|++||+|.+...... .....++.+.+|+.|........ .......+..+
T Consensus 614 l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~-~~~~~l~el~~Le~L~~ls~~~~---s~~~~e~l~~~ 689 (889)
T KOG4658|consen 614 LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALS-NDKLLLKELENLEHLENLSITIS---SVLLLEDLLGM 689 (889)
T ss_pred HHHHHhhheeccccccccccccchhhhcccccEEEeeccccc-cchhhHHhhhcccchhhheeecc---hhHhHhhhhhh
Confidence 999999999999987777777888888999999999765421 12222344444444443333111 11222344455
Q ss_pred ccccc----eeeeeccCcccchHhhcCCCCCCeEEEEeecCCCCchhhhccccC---CCCCCCeEEEeccCCCCCCCcCC
Q 003086 685 TRLRK----LGLQLTCGDEIEEDALVNLRELQFLSISCFDSHGSDLVAKIDELY---PPEQLDELSLNFYPGKTSPVWLN 757 (849)
Q Consensus 685 ~~L~~----L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~---~~~~L~~L~l~~~~~~~~p~~~~ 757 (849)
+.|+. +.+.++. .......+..+.+|+.|.+..+....... ....... .++++..+.+.++.....+.|.
T Consensus 690 ~~L~~~~~~l~~~~~~-~~~~~~~~~~l~~L~~L~i~~~~~~e~~~-~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~- 766 (889)
T KOG4658|consen 690 TRLRSLLQSLSIEGCS-KRTLISSLGSLGNLEELSILDCGISEIVI-EWEESLIVLLCFPNLSKVSILNCHMLRDLTWL- 766 (889)
T ss_pred HHHHHHhHhhhhcccc-cceeecccccccCcceEEEEcCCCchhhc-ccccccchhhhHHHHHHHHhhccccccccchh-
Confidence 55553 2222221 12333667889999999999876543211 1111111 1445555666666555557776
Q ss_pred CCCCCCCceEEEeeCCccc-ccccc-----cc--Cccccccccee-ecccccccccccccccccccccceeeecccccCc
Q 003086 758 PASLPMLRYLSVCSGNLSK-MHDSF-----WG--ENNTVWKIEAL-LFESLSDLGIEWTRLQGVMPSLHIVNASWCPELD 828 (849)
Q Consensus 758 ~~~l~~L~~L~L~~n~l~~-~~~~~-----~~--~~~fp~~L~~L-~l~~l~~L~l~~~~~~~~~p~L~~L~i~~c~~L~ 828 (849)
.-.|+|+.|.+..+.... +.+.. .. -..|+ ++..+ .+.++..+. +.....-.+|+|+.+.+..||+|.
T Consensus 767 -~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~-~~~~l~~~~~l~~l~-~i~~~~l~~~~l~~~~ve~~p~l~ 843 (889)
T KOG4658|consen 767 -LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFN-KLEGLRMLCSLGGLP-QLYWLPLSFLKLEELIVEECPKLG 843 (889)
T ss_pred -hccCcccEEEEecccccccCCCHHHHhhhcccEEeccc-ccccceeeecCCCCc-eeEecccCccchhheehhcCcccc
Confidence 567999999998765432 21111 01 11455 66666 466666666 555556678889999999999999
Q ss_pred ccCcCC
Q 003086 829 SFPIED 834 (849)
Q Consensus 829 ~l~l~~ 834 (849)
.+|+..
T Consensus 844 ~~P~~~ 849 (889)
T KOG4658|consen 844 KLPLLS 849 (889)
T ss_pred cCcccc
Confidence 999553
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=6.6e-58 Score=563.74 Aligned_cols=620 Identities=20% Similarity=0.242 Sum_probs=440.7
Q ss_pred CCCCccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEe---CCc---------
Q 003086 158 YDHTLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSV---SQT--------- 225 (849)
Q Consensus 158 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~---s~~--------- 225 (849)
.+.+++|||++.++++..+|.-..++.++|+||||||+||||||+.+|+ ++..+|+..+|+.. +..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccc
Confidence 3456799999999999999876666799999999999999999999998 67888988887742 111
Q ss_pred --cC-HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCC-CCCceEEEEecch
Q 003086 226 --FT-EEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPK-GKGSSIIITTRNG 301 (849)
Q Consensus 226 --~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~s~ilvTtr~~ 301 (849)
.. ...+..+++..+...... .... ...+++.+.++|+||||||||+ ...|+.+...... +.||+||||||+.
T Consensus 259 ~~~~~~~~l~~~~l~~il~~~~~-~~~~-~~~~~~~L~~krvLLVLDdv~~--~~~l~~L~~~~~~~~~GsrIIiTTrd~ 334 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDKKDI-KIYH-LGAMEERLKHRKVLIFIDDLDD--QDVLDALAGQTQWFGSGSRIIVITKDK 334 (1153)
T ss_pred cccchhHHHHHHHHHHHhCCCCc-ccCC-HHHHHHHHhCCeEEEEEeCCCC--HHHHHHHHhhCccCCCCcEEEEEeCcH
Confidence 01 123444555554332211 0101 2456778899999999999998 8889988875543 4599999999999
Q ss_pred hhhhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHhhhhhcCCCChHHH
Q 003086 302 KVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVGGMMLYKPPTYNEW 381 (849)
Q Consensus 302 ~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l~~~~~~~~~w 381 (849)
.++..++.. +.|+++.++.++||+||+++||.... .++.+.+++++|+++|+|+|||++++|+.|+.+. ..+|
T Consensus 335 ~vl~~~~~~--~~~~v~~l~~~ea~~LF~~~Af~~~~---~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~--~~~W 407 (1153)
T PLN03210 335 HFLRAHGID--HIYEVCLPSNELALEMFCRSAFKKNS---PPDGFMELASEVALRAGNLPLGLNVLGSYLRGRD--KEDW 407 (1153)
T ss_pred HHHHhcCCC--eEEEecCCCHHHHHHHHHHHhcCCCC---CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCC--HHHH
Confidence 998876654 58999999999999999999997543 3456889999999999999999999999999763 7899
Q ss_pred HHHHHhhhhhhccCCchHHHHHHHhhhCCCh-hhHHHHHHhccCCCCccccHHHHHHHhHhcCCCcCCCCCCHHHHHHHH
Q 003086 382 RRTADNFRDELAENDDSVMASLQLSYDELPP-YLKSCFLSFSVYPEDCVIRKEQLVYWWIGEGFVPQRNGRSSIEAGEDC 460 (849)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~-~~k~cfl~~s~fp~~~~i~~~~li~~wia~g~i~~~~~~~~e~~~~~~ 460 (849)
+.+++++... ....+..+|++||++|++ ..|.||+++|+|+.++.++ .+..|++.+.... +..
T Consensus 408 ~~~l~~L~~~---~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----------~~~ 471 (1153)
T PLN03210 408 MDMLPRLRNG---LDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----------NIG 471 (1153)
T ss_pred HHHHHHHHhC---ccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc----------hhC
Confidence 9999998764 356899999999999987 5999999999999886553 5777888765532 223
Q ss_pred HHhhhhccceEEeccccCCceeeeeecHHHHHHHHHHhhccc-------ccCC------------CCCcceeEeeccCcc
Q 003086 461 FSGLTNRCLVEVVDKAYNKMISTCKIHDMVRDLVIRVAEEDA-------FSKP------------NGLNCRHLGVTSDVE 521 (849)
Q Consensus 461 ~~~L~~~~ll~~~~~~~~~~~~~~~~Hdlv~~~~~~~~~~e~-------~~~~------------~~~~~r~lsi~~~~~ 521 (849)
++.|+++||++... ..+.|||++|++|+.+++++. |... ....++.+++.....
T Consensus 472 l~~L~~ksLi~~~~-------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~ 544 (1153)
T PLN03210 472 LKNLVDKSLIHVRE-------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEI 544 (1153)
T ss_pred hHHHHhcCCEEEcC-------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCcc
Confidence 88999999998743 358999999999999987653 1100 023455555542211
Q ss_pred ------hHhhhhccCccchhccccccc-cc------------------------chhhhhhhhhcCCCcceEEecCCccc
Q 003086 522 ------SKQLISNLKLRALMSTTKTAE-VN------------------------NIASNLATKFSECRYLRVLDISRSIF 570 (849)
Q Consensus 522 ------~~~~~~~~~lrsl~~~~~~~~-~~------------------------~~~~~~~~~~~~l~~Lr~L~L~~~~~ 570 (849)
......+.+|+.|.+...... .+ .....+|..| .+.+|+.|+|++|.+
T Consensus 545 ~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l 623 (1153)
T PLN03210 545 DELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKL 623 (1153)
T ss_pred ceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccc
Confidence 122334566665554322100 00 0012334334 457888888888887
Q ss_pred cccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccC
Q 003086 571 ELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLP 650 (849)
Q Consensus 571 ~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p 650 (849)
. .+|..+..+++|++|+|++|..+..+|. ++.+++|++|++++|..+..+|..++++++|+.|++++|.....+|
T Consensus 624 ~----~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp 698 (1153)
T PLN03210 624 E----KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILP 698 (1153)
T ss_pred c----ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccC
Confidence 6 6788888999999999998867888885 8889999999999998889999999999999999999987777888
Q ss_pred ccccccccccccCcccccCCCCCC----------------CCCchhh------------------------------hcc
Q 003086 651 KGFGKLLNLEVLLGFRPARSSQPE----------------GCRISEL------------------------------KNL 684 (849)
Q Consensus 651 ~~i~~l~~L~~L~~~~~~~~~~~~----------------~~~~~~l------------------------------~~l 684 (849)
..+ ++++|+.|.+.++.....+. ...+..+ ..+
T Consensus 699 ~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 699 TGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLS 777 (1153)
T ss_pred CcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhcc
Confidence 766 67777777765542110000 0000000 011
Q ss_pred ccccceeeeeccCcccchHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCC-CCCCcCCCCCCCC
Q 003086 685 TRLRKLGLQLTCGDEIEEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGK-TSPVWLNPASLPM 763 (849)
Q Consensus 685 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~ 763 (849)
++|+.|++++|......+..+.++++|+.|+|++|.... .+.....+++|+.|+++++... .+| ...++
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~-----~LP~~~~L~sL~~L~Ls~c~~L~~~p-----~~~~n 847 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE-----TLPTGINLESLESLDLSGCSRLRTFP-----DISTN 847 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC-----eeCCCCCccccCEEECCCCCcccccc-----ccccc
Confidence 344555555543222334556666777777776542111 1111124567777777765332 223 23467
Q ss_pred CceEEEeeCCccccccccccCcccccccceeecccccccccccccccccccccceeeecccccCcccCcCCc
Q 003086 764 LRYLSVCSGNLSKMHDSFWGENNTVWKIEALLFESLSDLGIEWTRLQGVMPSLHIVNASWCPELDSFPIEDV 835 (849)
Q Consensus 764 L~~L~L~~n~l~~~~~~~~~~~~fp~~L~~L~l~~l~~L~l~~~~~~~~~p~L~~L~i~~c~~L~~l~l~~n 835 (849)
|+.|+|++|.+..++..+ ..++ +|+.|.+.+|..|. ........++.|+.+++.+|++|+.+++.++
T Consensus 848 L~~L~Ls~n~i~~iP~si---~~l~-~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~ 914 (1153)
T PLN03210 848 ISDLNLSRTGIEEVPWWI---EKFS-NLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCGALTEASWNGS 914 (1153)
T ss_pred cCEeECCCCCCccChHHH---hcCC-CCCEEECCCCCCcC-ccCcccccccCCCeeecCCCcccccccCCCC
Confidence 888888888887665433 2467 99999999999998 7666667789999999999999998877553
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=5.1e-44 Score=378.75 Aligned_cols=277 Identities=38% Similarity=0.677 Sum_probs=229.9
Q ss_pred ccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCC-
Q 003086 166 LEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASA- 244 (849)
Q Consensus 166 r~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~- 244 (849)
||.++++|.++|.....+.++|+|+||||+||||||+.++++..++.+|+.++||.++...+...++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 7889999999999966779999999999999999999999987789999999999999999999999999999998742
Q ss_pred ---CCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEecchhhhhhccccccccccCCCC
Q 003086 245 ---GDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITTRNGKVSQKMGVKKARMHFPKFL 320 (849)
Q Consensus 245 ---~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTtr~~~v~~~~~~~~~~~~~l~~L 320 (849)
..+.++....+.+.|.++++||||||||+ ...|+.+...++... |++||||||+..++..+... ...+++++|
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~-~~~~~l~~L 157 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKDKRCLLVLDDVWD--EEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGT-DKVIELEPL 157 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-S--HHHH-------HCHHSS-EEEEEESCGGGGTTHHSC-EEEEECSS-
T ss_pred cccccccccccccchhhhccccceeeeeeecc--cccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 45788899999999999999999999999 779999988888765 99999999999988877653 268999999
Q ss_pred ChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHhhhhhcCCCChHHHHHHHHhhhhhhcc---CCc
Q 003086 321 SEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVGGMMLYKPPTYNEWRRTADNFRDELAE---NDD 397 (849)
Q Consensus 321 ~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l~~~~~~~~~w~~~~~~~~~~~~~---~~~ 397 (849)
+.+|+++||.+.++.... ...+...+.+++|+++|+|+||||+++|++|+.+. +.++|..+++++.....+ ...
T Consensus 158 ~~~ea~~L~~~~~~~~~~--~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~-~~~~w~~~~~~l~~~~~~~~~~~~ 234 (287)
T PF00931_consen 158 SEEEALELFKKRAGRKES--ESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKS-TVDEWEEALEELENSLRESRDYDR 234 (287)
T ss_dssp -HHHHHHHHHHHHTSHS------TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHH-SSSSHHHHHHHHHHCHTCSSGSCH
T ss_pred cccccccccccccccccc--ccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccc
Confidence 999999999999976541 23456678999999999999999999999997766 478999999988776643 368
Q ss_pred hHHHHHHHhhhCCChhhHHHHHHhccCCCCccccHHHHHHHhHhcCCCcCC
Q 003086 398 SVMASLQLSYDELPPYLKSCFLSFSVYPEDCVIRKEQLVYWWIGEGFVPQR 448 (849)
Q Consensus 398 ~~~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~wia~g~i~~~ 448 (849)
.+..++.+||+.||++.|.||+|||+||+++.|+++.++++|+++|||...
T Consensus 235 ~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 235 SVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 899999999999999999999999999999999999999999999999653
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=3e-21 Score=239.31 Aligned_cols=231 Identities=19% Similarity=0.235 Sum_probs=152.6
Q ss_pred ccCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccC
Q 003086 528 NLKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKK 607 (849)
Q Consensus 528 ~~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~ 607 (849)
.++|++|.+.++ .+...+|..|.++++|++|+|++|.+.+ .+|..++++++|++|+|++|.....+|..+++
T Consensus 139 l~~L~~L~Ls~n-----~~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 210 (968)
T PLN00113 139 IPNLETLDLSNN-----MLSGEIPNDIGSFSSLKVLDLGGNVLVG---KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ 210 (968)
T ss_pred cCCCCEEECcCC-----cccccCChHHhcCCCCCEEECccCcccc---cCChhhhhCcCCCeeeccCCCCcCcCChHHcC
Confidence 445555544332 3333566667777777777777777653 56677777777777777777555567777777
Q ss_pred CCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccc
Q 003086 608 LKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRL 687 (849)
Q Consensus 608 L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L 687 (849)
+.+|++|++++|.....+|..++++++|++|++++|.+.+..|..++++++|+.|++..+. ..+..+..+.++++|
T Consensus 211 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~----l~~~~p~~l~~l~~L 286 (968)
T PLN00113 211 MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK----LSGPIPPSIFSLQKL 286 (968)
T ss_pred cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCe----eeccCchhHhhccCc
Confidence 7777777777776666777777777777777777777766677777777777777755442 233345566777777
Q ss_pred cceeeeeccCcccchHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCC-CCCCcCCCCCCCCCce
Q 003086 688 RKLGLQLTCGDEIEEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGK-TSPVWLNPASLPMLRY 766 (849)
Q Consensus 688 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~ 766 (849)
+.|++++|.+....+..+..+++|+.|++++|.+.+. ....+..+++|+.|+++++... ..|.++ +.+++|+.
T Consensus 287 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~p~~l--~~~~~L~~ 360 (968)
T PLN00113 287 ISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK----IPVALTSLPRLQVLQLWSNKFSGEIPKNL--GKHNNLTV 360 (968)
T ss_pred CEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCc----CChhHhcCCCCCEEECcCCCCcCcCChHH--hCCCCCcE
Confidence 7777777766555556667777777777777655432 1223445667777777655332 335555 56677777
Q ss_pred EEEeeCCccc
Q 003086 767 LSVCSGNLSK 776 (849)
Q Consensus 767 L~L~~n~l~~ 776 (849)
|++++|++..
T Consensus 361 L~Ls~n~l~~ 370 (968)
T PLN00113 361 LDLSTNNLTG 370 (968)
T ss_pred EECCCCeeEe
Confidence 7777776653
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=1.1e-20 Score=234.42 Aligned_cols=201 Identities=21% Similarity=0.191 Sum_probs=125.8
Q ss_pred cceeEeeccCcc----hHhhhhccCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccccCCCC
Q 003086 510 NCRHLGVTSDVE----SKQLISNLKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQ 585 (849)
Q Consensus 510 ~~r~lsi~~~~~----~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~ 585 (849)
+.+.+.+..+.. +.....+++|++|.+.++ .+...+|..|.++++|++|+|++|.+.+ .+|..++.++
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-----~l~~~~p~~l~~l~~L~~L~L~~n~l~~---~~p~~l~~l~ 236 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN-----QLVGQIPRELGQMKSLKWIYLGYNNLSG---EIPYEIGGLT 236 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCC-----CCcCcCChHHcCcCCccEEECcCCccCC---cCChhHhcCC
Confidence 455555543321 223345566666655442 2333556667777777777777777653 5666677777
Q ss_pred ccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCccccccccccccCcc
Q 003086 586 HLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGF 665 (849)
Q Consensus 586 ~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~ 665 (849)
+|++|+|++|.....+|..++++++|++|++++|.....+|..+.++++|++|++++|.+.+..|..++.+++|+.|++.
T Consensus 237 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~ 316 (968)
T PLN00113 237 SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF 316 (968)
T ss_pred CCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECC
Confidence 77777777774444667677777777777777666666667777777777777777777666666666777777777654
Q ss_pred cccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCeEEEEeecCC
Q 003086 666 RPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSISCFDSH 722 (849)
Q Consensus 666 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 722 (849)
.+. ..+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 317 ~n~----~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~ 369 (968)
T PLN00113 317 SNN----FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369 (968)
T ss_pred CCc----cCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeE
Confidence 442 23334455666777777777776665555556666677777777666543
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.76 E-value=1.7e-20 Score=197.83 Aligned_cols=280 Identities=20% Similarity=0.236 Sum_probs=200.3
Q ss_pred hhhhccCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCc
Q 003086 524 QLISNLKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPP 603 (849)
Q Consensus 524 ~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~ 603 (849)
...+.+.||++....+... .+.+|+.+..++.|.+||||+|++. ..|..+.+-+++-.|+|++| .|..+|.
T Consensus 73 ELs~Lp~LRsv~~R~N~LK----nsGiP~diF~l~dLt~lDLShNqL~----EvP~~LE~AKn~iVLNLS~N-~IetIPn 143 (1255)
T KOG0444|consen 73 ELSDLPRLRSVIVRDNNLK----NSGIPTDIFRLKDLTILDLSHNQLR----EVPTNLEYAKNSIVLNLSYN-NIETIPN 143 (1255)
T ss_pred hhccchhhHHHhhhccccc----cCCCCchhcccccceeeecchhhhh----hcchhhhhhcCcEEEEcccC-ccccCCc
Confidence 4557888999888776443 2367888889999999999999997 79999999999999999999 9999998
Q ss_pred cc-cCCCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhh
Q 003086 604 SL-KKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELK 682 (849)
Q Consensus 604 ~i-~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~ 682 (849)
++ -+|..|-+|||+ ++.+..+|+.+..|.+|++|.|++|++...--..+..+++|++|.+++... .....+..+.
T Consensus 144 ~lfinLtDLLfLDLS-~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR---Tl~N~Ptsld 219 (1255)
T KOG0444|consen 144 SLFINLTDLLFLDLS-NNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR---TLDNIPTSLD 219 (1255)
T ss_pred hHHHhhHhHhhhccc-cchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc---hhhcCCCchh
Confidence 75 589999999999 556889999999999999999999987543334455677888887665432 2344677888
Q ss_pred ccccccceeeeeccCcccchHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCCCcCCCCCCC
Q 003086 683 NLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSPVWLNPASLP 762 (849)
Q Consensus 683 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~ 762 (849)
.+.||+.++++.|++.. .|+.+.++++|+.|+|+.|.++..... ...-.+|++|.++.+.....|+.+ ..|+
T Consensus 220 ~l~NL~dvDlS~N~Lp~-vPecly~l~~LrrLNLS~N~iteL~~~-----~~~W~~lEtLNlSrNQLt~LP~av--cKL~ 291 (1255)
T KOG0444|consen 220 DLHNLRDVDLSENNLPI-VPECLYKLRNLRRLNLSGNKITELNMT-----EGEWENLETLNLSRNQLTVLPDAV--CKLT 291 (1255)
T ss_pred hhhhhhhccccccCCCc-chHHHhhhhhhheeccCcCceeeeecc-----HHHHhhhhhhccccchhccchHHH--hhhH
Confidence 99999999999998654 457888999999999999976643110 011235566666665555556655 6666
Q ss_pred CCceEEEeeCCcc-------------------------ccccccccCcccccccceeecccccccccccccccccccccc
Q 003086 763 MLRYLSVCSGNLS-------------------------KMHDSFWGENNTVWKIEALLFESLSDLGIEWTRLQGVMPSLH 817 (849)
Q Consensus 763 ~L~~L~L~~n~l~-------------------------~~~~~~~~~~~fp~~L~~L~l~~l~~L~l~~~~~~~~~p~L~ 817 (849)
.|+.|.+.+|+++ -++...+ .++ +|+.|.|....-++ .+.-.-.+|.|+
T Consensus 292 kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglc---RC~-kL~kL~L~~NrLiT--LPeaIHlL~~l~ 365 (1255)
T KOG0444|consen 292 KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLC---RCV-KLQKLKLDHNRLIT--LPEAIHLLPDLK 365 (1255)
T ss_pred HHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhh---hhH-HHHHhcccccceee--chhhhhhcCCcc
Confidence 6666666666554 2211111 233 55555555332222 222222477888
Q ss_pred eeeecccccCccc
Q 003086 818 IVNASWCPELDSF 830 (849)
Q Consensus 818 ~L~i~~c~~L~~l 830 (849)
.|+++.+|+|..=
T Consensus 366 vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 366 VLDLRENPNLVMP 378 (1255)
T ss_pred eeeccCCcCccCC
Confidence 8888888888543
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.69 E-value=7.4e-18 Score=177.36 Aligned_cols=268 Identities=18% Similarity=0.188 Sum_probs=151.0
Q ss_pred hhhhcCCCcceEEecCCccccccccccc-cccCCCCccceEeccCCCCCcccC-ccccCCCCCcEEeeccccCCccCChh
Q 003086 551 ATKFSECRYLRVLDISRSIFELPLKGLL-SQTGSLQHLSYLCLSNTHPLIHLP-PSLKKLKNLQILDVSYCQNLKMLPSY 628 (849)
Q Consensus 551 ~~~~~~l~~Lr~L~L~~~~~~~~~~~~p-~~~~~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~ 628 (849)
...++-++.||+||||.|.|. .+| .+|..-.++++|+|++| .|+.+- ..|..|.+|.+|.|++|.....-+..
T Consensus 142 se~L~~l~alrslDLSrN~is----~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~ 216 (873)
T KOG4194|consen 142 SEELSALPALRSLDLSRNLIS----EIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRITTLPQRS 216 (873)
T ss_pred HHHHHhHhhhhhhhhhhchhh----cccCCCCCCCCCceEEeeccc-cccccccccccccchheeeecccCcccccCHHH
Confidence 344555566666666666654 233 23444456666666666 444432 24555666666666654433333344
Q ss_pred hhcccCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCC
Q 003086 629 VQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNL 708 (849)
Q Consensus 629 i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~ 708 (849)
|.+|++|+.|+|..|++...--..|..|.+|+.|.+-.+... ...-..|-.|.+++.|++..|++..+....+.++
T Consensus 217 Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~----kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL 292 (873)
T KOG4194|consen 217 FKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS----KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL 292 (873)
T ss_pred hhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc----cccCcceeeecccceeecccchhhhhhccccccc
Confidence 555666666666666654222334566666666665444221 1111235556666666666666655555556666
Q ss_pred CCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCC-CcCCCCCCCCCceEEEeeCCccccccccccCccc
Q 003086 709 RELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSP-VWLNPASLPMLRYLSVCSGNLSKMHDSFWGENNT 787 (849)
Q Consensus 709 ~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~f 787 (849)
+.|+.|+|++|.+... ....+..++.|+.|+++++....++ ..+ ..|..|+.|+|++|.+..+....+. +.
T Consensus 293 t~L~~L~lS~NaI~ri----h~d~WsftqkL~~LdLs~N~i~~l~~~sf--~~L~~Le~LnLs~Nsi~~l~e~af~--~l 364 (873)
T KOG4194|consen 293 TSLEQLDLSYNAIQRI----HIDSWSFTQKLKELDLSSNRITRLDEGSF--RVLSQLEELNLSHNSIDHLAEGAFV--GL 364 (873)
T ss_pred chhhhhccchhhhhee----ecchhhhcccceeEeccccccccCChhHH--HHHHHhhhhcccccchHHHHhhHHH--Hh
Confidence 7777777776655443 3345556667777777665433322 233 4566677777777776655433222 12
Q ss_pred ccccceeecccccccccccccccc-----cccccceeeeccc-------------ccCcccCcCCccccc
Q 003086 788 VWKIEALLFESLSDLGIEWTRLQG-----VMPSLHIVNASWC-------------PELDSFPIEDVGFRG 839 (849)
Q Consensus 788 p~~L~~L~l~~l~~L~l~~~~~~~-----~~p~L~~L~i~~c-------------~~L~~l~l~~n~l~~ 839 (849)
. +|+.|+|++. +++|..+.+ .+|.|++|.+.|+ +.|+.|+|.+|.|-.
T Consensus 365 s-sL~~LdLr~N---~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 365 S-SLHKLDLRSN---ELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIAS 430 (873)
T ss_pred h-hhhhhcCcCC---eEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCccee
Confidence 2 6666666643 235655432 3889999987754 567777777776653
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.67 E-value=2.4e-17 Score=173.50 Aligned_cols=161 Identities=19% Similarity=0.146 Sum_probs=91.3
Q ss_pred hhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccC-ccccCCCCCcEEeeccccCCccCC-h
Q 003086 550 LATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLP-PSLKKLKNLQILDVSYCQNLKMLP-S 627 (849)
Q Consensus 550 ~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~lp-~ 627 (849)
-+..|.++++|+.+++..|.+. .+|...+...||+.|+|.+| .|..+. +++..++.|++|||+.|.+ ..+| .
T Consensus 94 d~~~f~nl~nLq~v~l~~N~Lt----~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLSrN~i-s~i~~~ 167 (873)
T KOG4194|consen 94 DFEFFYNLPNLQEVNLNKNELT----RIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLSRNLI-SEIPKP 167 (873)
T ss_pred cHHHHhcCCcceeeeeccchhh----hcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhhhchh-hcccCC
Confidence 3455677777777777777775 56665555666777777777 444433 3455666666777765443 2333 2
Q ss_pred hhhcccCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcC
Q 003086 628 YVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVN 707 (849)
Q Consensus 628 ~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 707 (849)
.+..-.++++|+|++|.++......|..+.+|-+|.+..+. .....+..|.+|++|+.|++..|.+.......|..
T Consensus 168 sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr----ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqg 243 (873)
T KOG4194|consen 168 SFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR----ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQG 243 (873)
T ss_pred CCCCCCCceEEeeccccccccccccccccchheeeecccCc----ccccCHHHhhhcchhhhhhccccceeeehhhhhcC
Confidence 33444566666666666654444456666666666544442 23333445555666666666666544333344555
Q ss_pred CCCCCeEEEEeec
Q 003086 708 LRELQFLSISCFD 720 (849)
Q Consensus 708 ~~~L~~L~L~~~~ 720 (849)
+++|+.|.|..|+
T Consensus 244 L~Sl~nlklqrN~ 256 (873)
T KOG4194|consen 244 LPSLQNLKLQRND 256 (873)
T ss_pred chhhhhhhhhhcC
Confidence 5555555555443
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.65 E-value=6.9e-18 Score=178.44 Aligned_cols=236 Identities=20% Similarity=0.157 Sum_probs=156.6
Q ss_pred hhhhhhcCCCcceEEecCCcccccccccccccc-CCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCCh
Q 003086 549 NLATKFSECRYLRVLDISRSIFELPLKGLLSQT-GSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPS 627 (849)
Q Consensus 549 ~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~-~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~ 627 (849)
..|..+..-+++-||+||+|+|. .+|.++ -+|+.|-+|||++| .+..+|..+..|.+||+|+|++|+....--.
T Consensus 117 EvP~~LE~AKn~iVLNLS~N~Ie----tIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLr 191 (1255)
T KOG0444|consen 117 EVPTNLEYAKNSIVLNLSYNNIE----TIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLR 191 (1255)
T ss_pred hcchhhhhhcCcEEEEcccCccc----cCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHh
Confidence 56777778888889999999886 577654 57888889999988 8888898888899999999987764321111
Q ss_pred hhhcccCCcEeeccCCCCc-cccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCccc------
Q 003086 628 YVQSFIQLRALDVTHCGSL-QYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEI------ 700 (849)
Q Consensus 628 ~i~~l~~L~~L~l~~~~~~-~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~------ 700 (849)
.+-.+++|..|.+++++.+ ..+|..+..|.+|..++++.+. ....+..+-++.+|+.|++++|.+++.
T Consensus 192 QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-----Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~ 266 (1255)
T KOG0444|consen 192 QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-----LPIVPECLYKLRNLRRLNLSGNKITELNMTEGE 266 (1255)
T ss_pred cCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-----CCcchHHHhhhhhhheeccCcCceeeeeccHHH
Confidence 2223556666666665433 2456666666666666654442 233445566666666666666654432
Q ss_pred ----------------chHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCCCcCCCCCCCCC
Q 003086 701 ----------------EEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSPVWLNPASLPML 764 (849)
Q Consensus 701 ----------------~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L 764 (849)
.|+.+.++++|+.|.+.+|.++-... .+.+..+.+|+.+...++.....|.-+ .+|+.|
T Consensus 267 W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGi---PSGIGKL~~Levf~aanN~LElVPEgl--cRC~kL 341 (1255)
T KOG0444|consen 267 WENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGI---PSGIGKLIQLEVFHAANNKLELVPEGL--CRCVKL 341 (1255)
T ss_pred HhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCC---ccchhhhhhhHHHHhhccccccCchhh--hhhHHH
Confidence 23455556666666665554443322 233444556666666666655667666 899999
Q ss_pred ceEEEeeCCccccccccccCcccccccceeecccccccc
Q 003086 765 RYLSVCSGNLSKMHDSFWGENNTVWKIEALLFESLSDLG 803 (849)
Q Consensus 765 ~~L~L~~n~l~~~~~~~~~~~~fp~~L~~L~l~~l~~L~ 803 (849)
+.|.|++|.+..++....- .| .|+.|++...++|.
T Consensus 342 ~kL~L~~NrLiTLPeaIHl---L~-~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 342 QKLKLDHNRLITLPEAIHL---LP-DLKVLDLRENPNLV 376 (1255)
T ss_pred HHhcccccceeechhhhhh---cC-CcceeeccCCcCcc
Confidence 9999999999888765532 34 88999998888776
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.58 E-value=1.4e-14 Score=179.94 Aligned_cols=277 Identities=23% Similarity=0.302 Sum_probs=180.4
Q ss_pred hccCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCcccc
Q 003086 527 SNLKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLK 606 (849)
Q Consensus 527 ~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~ 606 (849)
...+|+.|.+.+.. + ..++..+..+++|+.|+|+++... ..+| .++.+++|++|+|++|..+..+|.+++
T Consensus 609 ~~~~L~~L~L~~s~-----l-~~L~~~~~~l~~Lk~L~Ls~~~~l---~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~ 678 (1153)
T PLN03210 609 RPENLVKLQMQGSK-----L-EKLWDGVHSLTGLRNIDLRGSKNL---KEIP-DLSMATNLETLKLSDCSSLVELPSSIQ 678 (1153)
T ss_pred CccCCcEEECcCcc-----c-cccccccccCCCCCEEECCCCCCc---CcCC-ccccCCcccEEEecCCCCccccchhhh
Confidence 34555555444332 1 234556678888899998877532 1444 477888888888888877888888888
Q ss_pred CCCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCcccc-------------------ccccccccCcccc
Q 003086 607 KLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFG-------------------KLLNLEVLLGFRP 667 (849)
Q Consensus 607 ~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~-------------------~l~~L~~L~~~~~ 667 (849)
.+.+|+.|++++|+.+..+|..+ ++++|+.|++++|.....+|.... .+++|+.|.+..+
T Consensus 679 ~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~ 757 (1153)
T PLN03210 679 YLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEM 757 (1153)
T ss_pred ccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCcccccccccccccccccccccc
Confidence 88888888888888888888765 677888888877754433332111 2233333333221
Q ss_pred c---------------------------CCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCeEEEEeec
Q 003086 668 A---------------------------RSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSISCFD 720 (849)
Q Consensus 668 ~---------------------------~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 720 (849)
. ..+......+..++++++|+.|++.+|..-...+..+ ++++|+.|+|++|.
T Consensus 758 ~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 758 KSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCS 836 (1153)
T ss_pred chhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCC
Confidence 0 0011122356678999999999999874222223323 68999999999774
Q ss_pred CCCCchhhhccccCCCCCCCeEEEeccCCCCCCCcCCCCCCCCCceEEEee-CCccccccccccCcccccccceeecccc
Q 003086 721 SHGSDLVAKIDELYPPEQLDELSLNFYPGKTSPVWLNPASLPMLRYLSVCS-GNLSKMHDSFWGENNTVWKIEALLFESL 799 (849)
Q Consensus 721 ~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~fp~~L~~L~l~~l 799 (849)
... .+.. .+.+|+.|+++++....+|.++ ..+++|+.|+|++ +++..++... ..++ +|+.|.+.+|
T Consensus 837 ~L~-----~~p~--~~~nL~~L~Ls~n~i~~iP~si--~~l~~L~~L~L~~C~~L~~l~~~~---~~L~-~L~~L~l~~C 903 (1153)
T PLN03210 837 RLR-----TFPD--ISTNISDLNLSRTGIEEVPWWI--EKFSNLSFLDMNGCNNLQRVSLNI---SKLK-HLETVDFSDC 903 (1153)
T ss_pred ccc-----cccc--cccccCEeECCCCCCccChHHH--hcCCCCCEEECCCCCCcCccCccc---cccc-CCCeeecCCC
Confidence 221 1111 2468999999987666678887 8899999999987 4666655432 2355 8888899998
Q ss_pred cccccccccc-------------cccccccceeeecccccCcc
Q 003086 800 SDLGIEWTRL-------------QGVMPSLHIVNASWCPELDS 829 (849)
Q Consensus 800 ~~L~l~~~~~-------------~~~~p~L~~L~i~~c~~L~~ 829 (849)
..|. ..... ...+|....+.+.+|.+|..
T Consensus 904 ~~L~-~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~ 945 (1153)
T PLN03210 904 GALT-EASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQ 945 (1153)
T ss_pred cccc-cccCCCCchhhhhhcccccccCCchhccccccccCCCc
Confidence 8776 32211 12356666677888887753
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.54 E-value=1.3e-16 Score=161.03 Aligned_cols=161 Identities=27% Similarity=0.243 Sum_probs=109.1
Q ss_pred hhhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChh
Q 003086 549 NLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSY 628 (849)
Q Consensus 549 ~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~ 628 (849)
.+++.++.+..|..|+..+|++. .+|..++.+..|..|++.+| .++.+|...-++..|+.||.. .+.+..+|+.
T Consensus 128 el~~~i~~~~~l~dl~~~~N~i~----slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~-~N~L~tlP~~ 201 (565)
T KOG0472|consen 128 ELPDSIGRLLDLEDLDATNNQIS----SLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCN-SNLLETLPPE 201 (565)
T ss_pred ecCchHHHHhhhhhhhccccccc----cCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccc-hhhhhcCChh
Confidence 34556666666667776666665 56666667777777777776 666666665556667777765 2346667777
Q ss_pred hhcccCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchh-hhccccccceeeeeccCcccchHhhcC
Q 003086 629 VQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISE-LKNLTRLRKLGLQLTCGDEIEEDALVN 707 (849)
Q Consensus 629 i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~ 707 (849)
++.+.+|..|++.+|.+. .+| .|+.++.|.+|+...+ . ....+.+ +.++++|..|++..|++.+.+ +.+..
T Consensus 202 lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N----~-i~~lpae~~~~L~~l~vLDLRdNklke~P-de~cl 273 (565)
T KOG0472|consen 202 LGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGEN----Q-IEMLPAEHLKHLNSLLVLDLRDNKLKEVP-DEICL 273 (565)
T ss_pred hcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhccc----H-HHhhHHHHhcccccceeeeccccccccCc-hHHHH
Confidence 777777777777777665 566 5777777777764333 2 2223334 558899999999999876654 55677
Q ss_pred CCCCCeEEEEeecCCC
Q 003086 708 LRELQFLSISCFDSHG 723 (849)
Q Consensus 708 ~~~L~~L~L~~~~~~~ 723 (849)
+.+|++|++++|.+++
T Consensus 274 LrsL~rLDlSNN~is~ 289 (565)
T KOG0472|consen 274 LRSLERLDLSNNDISS 289 (565)
T ss_pred hhhhhhhcccCCcccc
Confidence 8899999999887654
No 12
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.51 E-value=6.3e-16 Score=138.19 Aligned_cols=143 Identities=28% Similarity=0.310 Sum_probs=126.2
Q ss_pred hhhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccC-CccCCh
Q 003086 549 NLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQN-LKMLPS 627 (849)
Q Consensus 549 ~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~-~~~lp~ 627 (849)
..|+.+..+++|++|++++|+++ .+|.+++.++.||.|+++-| .+..+|..|+.++-|+.|||++|+. ...+|.
T Consensus 47 ~vppnia~l~nlevln~~nnqie----~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldltynnl~e~~lpg 121 (264)
T KOG0617|consen 47 VVPPNIAELKNLEVLNLSNNQIE----ELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDLTYNNLNENSLPG 121 (264)
T ss_pred ecCCcHHHhhhhhhhhcccchhh----hcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhccccccccccCCc
Confidence 56778899999999999999997 89999999999999999999 8899999999999999999998884 467999
Q ss_pred hhhcccCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccch
Q 003086 628 YVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEE 702 (849)
Q Consensus 628 ~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 702 (849)
.|..+..|+.|+++.|.+. .+|..+++|++||.|.+-.+. .-..+.+++.++.|+.|++.+|.+.-.++
T Consensus 122 nff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdnd-----ll~lpkeig~lt~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 122 NFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDND-----LLSLPKEIGDLTRLRELHIQGNRLTVLPP 190 (264)
T ss_pred chhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCc-----hhhCcHHHHHHHHHHHHhcccceeeecCh
Confidence 9999999999999999876 899999999999999854442 34468899999999999999998765544
No 13
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.50 E-value=3.7e-12 Score=157.55 Aligned_cols=293 Identities=15% Similarity=0.135 Sum_probs=183.2
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeC-CccCHHHHHHHHHHHh
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVS-QTFTEEQIMRSMLRNL 239 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~i~~~l 239 (849)
..++-|. +|.+.|... ...+++.|+|++|.||||++..+... ++.++|+++. .+.++..+...++..+
T Consensus 14 ~~~~~R~----rl~~~l~~~-~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 14 HNTVVRE----RLLAKLSGA-NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred cccCcch----HHHHHHhcc-cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHH
Confidence 3456665 444444432 35789999999999999999998752 2368999996 4457777777777777
Q ss_pred cCCCCC--------------CCHHHHHHHHHHHhc--CccEEEEEcCCCccCHHH-HHHHHhcCCCCC-CceEEEEecch
Q 003086 240 GDASAG--------------DDRGELLRKINQYLL--GKRYLIVMDDVWGEDLAW-WRRIYEGLPKGK-GSSIIITTRNG 301 (849)
Q Consensus 240 ~~~~~~--------------~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~~-~~~l~~~l~~~~-~s~ilvTtr~~ 301 (849)
...... .+...+...+...+. +.+++|||||+...+... .+.+...++..+ +.++|||||..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~ 162 (903)
T PRK04841 83 QQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNL 162 (903)
T ss_pred HHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCC
Confidence 422110 122333333433332 678999999997744333 334444444444 77899999973
Q ss_pred hhhh--hccccccccccCC----CCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHhhhhhcCC
Q 003086 302 KVSQ--KMGVKKARMHFPK----FLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVGGMMLYKP 375 (849)
Q Consensus 302 ~v~~--~~~~~~~~~~~l~----~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l~~~~ 375 (849)
.-.. ...... ...++. +|+.+|+.++|...... +-..+....|.+.|+|.|+++..++..+....
T Consensus 163 ~~~~~~~l~~~~-~~~~l~~~~l~f~~~e~~~ll~~~~~~--------~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~ 233 (903)
T PRK04841 163 PPLGIANLRVRD-QLLEIGSQQLAFDHQEAQQFFDQRLSS--------PIEAAESSRLCDDVEGWATALQLIALSARQNN 233 (903)
T ss_pred CCCchHhHHhcC-cceecCHHhCCCCHHHHHHHHHhccCC--------CCCHHHHHHHHHHhCChHHHHHHHHHHHhhCC
Confidence 2111 111111 234455 99999999999876521 12356678899999999999999887765433
Q ss_pred CChHHHHHHHHhhhhhhcc-CCchHHHHHHH-hhhCCChhhHHHHHHhccCCCCccccHHHHHHHhHhcCCCcCCCCCCH
Q 003086 376 PTYNEWRRTADNFRDELAE-NDDSVMASLQL-SYDELPPYLKSCFLSFSVYPEDCVIRKEQLVYWWIGEGFVPQRNGRSS 453 (849)
Q Consensus 376 ~~~~~w~~~~~~~~~~~~~-~~~~~~~~l~~-sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~wia~g~i~~~~~~~~ 453 (849)
.+... .. +.+.. +...+...+.- .++.||+..+..+...|+++. ++.+.+-... |
T Consensus 234 ~~~~~---~~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~~---~~~~l~~~l~---~---------- 290 (903)
T PRK04841 234 SSLHD---SA----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLRS---MNDALIVRVT---G---------- 290 (903)
T ss_pred Cchhh---hh----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccccc---CCHHHHHHHc---C----------
Confidence 21111 11 11111 12335554433 488999999999999999972 3433222111 1
Q ss_pred HHHHHHHHHhhhhccceEEeccccCCceeeeeecHHHHHHHHHHhh
Q 003086 454 IEAGEDCFSGLTNRCLVEVVDKAYNKMISTCKIHDMVRDLVIRVAE 499 (849)
Q Consensus 454 e~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~Hdlv~~~~~~~~~ 499 (849)
.+.+...+++|.+++++..... +....|+.|++++++......
T Consensus 291 ~~~~~~~L~~l~~~~l~~~~~~---~~~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 291 EENGQMRLEELERQGLFIQRMD---DSGEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred CCcHHHHHHHHHHCCCeeEeec---CCCCEEehhHHHHHHHHHHHH
Confidence 1224678999999999754321 111357889999999988753
No 14
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.49 E-value=2e-11 Score=135.39 Aligned_cols=316 Identities=14% Similarity=0.045 Sum_probs=189.5
Q ss_pred CCCCCCccccccccHHHHHHHHhcc--CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHH
Q 003086 156 PVYDHTLVVGLEGDTRKIKDWLFEA--EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMR 233 (849)
Q Consensus 156 ~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 233 (849)
+...++.++||++++++|...+... +.....+.|+|++|+|||++++.++++.......-..+++++....+...++.
T Consensus 25 ~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 25 PDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHH
Confidence 3345668999999999999998553 23345678999999999999999998532222123466777777778889999
Q ss_pred HHHHHhcCC-CC--CCCHHHHHHHHHHHhc--CccEEEEEcCCCccC----HHHHHHHHhcCCCCCCce--EEEEecchh
Q 003086 234 SMLRNLGDA-SA--GDDRGELLRKINQYLL--GKRYLIVMDDVWGED----LAWWRRIYEGLPKGKGSS--IIITTRNGK 302 (849)
Q Consensus 234 ~i~~~l~~~-~~--~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~----~~~~~~l~~~l~~~~~s~--ilvTtr~~~ 302 (849)
.|+.++... .+ +.+.+++...+.+.+. ++..+||||+++... .+.+..+...+....+++ +|.++....
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLT 184 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcc
Confidence 999999762 22 3466777788877775 456899999997621 223334433333223333 566666544
Q ss_pred hhhhccc-----cccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHh----cCCchhHHHHHhhhh--
Q 003086 303 VSQKMGV-----KKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEK----CKGLPLAIKAVGGMM-- 371 (849)
Q Consensus 303 v~~~~~~-----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~----c~G~PLai~~~~~~l-- 371 (849)
+...... .....+.+.+++.++..+++..++.....+ ....++..+.|++. .|..+.|+.++-.+.
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~---~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~ 261 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYP---GVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLI 261 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhccc---CCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3322211 111467899999999999999887422111 11123334444444 455777776654322
Q ss_pred h--c-CC-CChHHHHHHHHhhhhhhccCCchHHHHHHHhhhCCChhhHHHHHHhccCCC--CccccHHHHHH--HhHhcC
Q 003086 372 L--Y-KP-PTYNEWRRTADNFRDELAENDDSVMASLQLSYDELPPYLKSCFLSFSVYPE--DCVIRKEQLVY--WWIGEG 443 (849)
Q Consensus 372 ~--~-~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~s~fp~--~~~i~~~~li~--~wia~g 443 (849)
+ . .. -+.++...+.+... .....-.+..||.+.|..+..++..-+ ...+...++.. ..+++.
T Consensus 262 a~~~~~~~I~~~~v~~a~~~~~----------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~ 331 (394)
T PRK00411 262 AEREGSRKVTEEDVRKAYEKSE----------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEE 331 (394)
T ss_pred HHHcCCCCcCHHHHHHHHHHHH----------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 1 1 11 13556665555441 122355688999998877766553321 13355555552 233332
Q ss_pred CCcCCCCCCHHHHHHHHHHhhhhccceEEecc--ccCCceeeeeec
Q 003086 444 FVPQRNGRSSIEAGEDCFSGLTNRCLVEVVDK--AYNKMISTCKIH 487 (849)
Q Consensus 444 ~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~--~~~~~~~~~~~H 487 (849)
+-. . ..-......|+++|...|+|+.... ...|+.+.++++
T Consensus 332 ~~~--~-~~~~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~ 374 (394)
T PRK00411 332 LGY--E-PRTHTRFYEYINKLDMLGIINTRYSGKGGRGRTRLISLS 374 (394)
T ss_pred cCC--C-cCcHHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEec
Confidence 210 0 1112345679999999999997542 223444444443
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.46 E-value=6.8e-16 Score=155.94 Aligned_cols=213 Identities=23% Similarity=0.216 Sum_probs=134.6
Q ss_pred hhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhh
Q 003086 550 LATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYV 629 (849)
Q Consensus 550 ~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i 629 (849)
+...+.++..|.||++++|.+. .+|.+++.+..+..|+.++| .+..+|+.++.+.+|..|+.++|. ...+|+++
T Consensus 60 l~~dl~nL~~l~vl~~~~n~l~----~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n~-~~el~~~i 133 (565)
T KOG0472|consen 60 LREDLKNLACLTVLNVHDNKLS----QLPAAIGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSSNE-LKELPDSI 133 (565)
T ss_pred ccHhhhcccceeEEEeccchhh----hCCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhccccc-eeecCchH
Confidence 3345667777777777777765 67777777777777777777 677777777777777777777554 45566667
Q ss_pred hcccCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCC
Q 003086 630 QSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLR 709 (849)
Q Consensus 630 ~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~ 709 (849)
+.+-.|..|+..+|++. ++|.+++.+.+|..+.+.++. ....+...-.++.|++|+...|-++.+ |..++.+.
T Consensus 134 ~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~-----l~~l~~~~i~m~~L~~ld~~~N~L~tl-P~~lg~l~ 206 (565)
T KOG0472|consen 134 GRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNK-----LKALPENHIAMKRLKHLDCNSNLLETL-PPELGGLE 206 (565)
T ss_pred HHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccc-----hhhCCHHHHHHHHHHhcccchhhhhcC-Chhhcchh
Confidence 77777777777777766 677777777777666644332 222333444467777777766654433 34566677
Q ss_pred CCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCCCcCCCCCCCCCceEEEeeCCccccccccc
Q 003086 710 ELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSPVWLNPASLPMLRYLSVCSGNLSKMHDSFW 782 (849)
Q Consensus 710 ~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 782 (849)
+|..|+|..|.+.. +..+..|..|.+|++..+.....|.-.. .++++|..|+|..|+++.++++.+
T Consensus 207 ~L~~LyL~~Nki~~------lPef~gcs~L~Elh~g~N~i~~lpae~~-~~L~~l~vLDLRdNklke~Pde~c 272 (565)
T KOG0472|consen 207 SLELLYLRRNKIRF------LPEFPGCSLLKELHVGENQIEMLPAEHL-KHLNSLLVLDLRDNKLKEVPDEIC 272 (565)
T ss_pred hhHHHHhhhccccc------CCCCCccHHHHHHHhcccHHHhhHHHHh-cccccceeeeccccccccCchHHH
Confidence 77777777664432 2244456666666666554444343221 466777777777777776666554
No 16
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.40 E-value=6.3e-11 Score=124.09 Aligned_cols=200 Identities=17% Similarity=0.188 Sum_probs=128.7
Q ss_pred cccHHHHHHHHhcc-CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCC
Q 003086 167 EGDTRKIKDWLFEA-EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAG 245 (849)
Q Consensus 167 ~~~~~~l~~~L~~~-~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~ 245 (849)
....+++...+... ..+..++.|+|++|+|||||++.+++..... .+ ..+|+ +....+..+++..|+..++.+...
T Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~ 101 (269)
T TIGR03015 25 SKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG 101 (269)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC
Confidence 33444555555432 2234588999999999999999998853211 11 12233 334457788999999998876554
Q ss_pred CCHHHHHHHHHHHh-----cCccEEEEEcCCCccCHHHHHHHHhcCCC--CC--CceEEEEecchhhhhhcc--------
Q 003086 246 DDRGELLRKINQYL-----LGKRYLIVMDDVWGEDLAWWRRIYEGLPK--GK--GSSIIITTRNGKVSQKMG-------- 308 (849)
Q Consensus 246 ~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~--~~--~s~ilvTtr~~~v~~~~~-------- 308 (849)
.+.......+.+.+ .+++.++|+||++..+...++.+...... .. ...|++|.... ....+.
T Consensus 102 ~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~ 180 (269)
T TIGR03015 102 RDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLR 180 (269)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHH
Confidence 44444444444332 67889999999998766777776643321 11 33556666543 221111
Q ss_pred ccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHhhhh
Q 003086 309 VKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVGGMM 371 (849)
Q Consensus 309 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l 371 (849)
......+++.+++.+|..+++...+...... ....-.++..+.|++.|+|.|..|..++..+
T Consensus 181 ~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~-~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 181 QRIIASCHLGPLDREETREYIEHRLERAGNR-DAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred hheeeeeeCCCCCHHHHHHHHHHHHHHcCCC-CCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 1111467899999999999999887543211 1122346788999999999999999988766
No 17
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.39 E-value=2.5e-10 Score=125.25 Aligned_cols=306 Identities=14% Similarity=0.082 Sum_probs=181.0
Q ss_pred CCCCCCccccccccHHHHHHHHhcc--CCCeEEEEEEcCCCCcHHHHHHHHhcChhhh-ccc---CceEEEEeCCccCHH
Q 003086 156 PVYDHTLVVGLEGDTRKIKDWLFEA--EEGILAIGVVGMGGLGKTTIAQKVFNDREIE-NWF---ERRMWVSVSQTFTEE 229 (849)
Q Consensus 156 ~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f---~~~~wv~~s~~~~~~ 229 (849)
+...++.++||++++++|..+|... +.....+.|+|++|+|||++++.+++..... ... -..+|+++....+..
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~ 89 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLY 89 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHH
Confidence 3344567999999999999998752 2334678999999999999999998842111 111 135788888777888
Q ss_pred HHHHHHHHHhc---CCCC--CCCHHHHHHHHHHHhc--CccEEEEEcCCCcc---CHHHHHHHHhc--CCCC--CCceEE
Q 003086 230 QIMRSMLRNLG---DASA--GDDRGELLRKINQYLL--GKRYLIVMDDVWGE---DLAWWRRIYEG--LPKG--KGSSII 295 (849)
Q Consensus 230 ~~~~~i~~~l~---~~~~--~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~---~~~~~~~l~~~--l~~~--~~s~il 295 (849)
.++..|+.++. ...+ +.+..+....+.+.+. +++++||||+++.. .......+... .... ....+|
T Consensus 90 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI 169 (365)
T TIGR02928 90 QVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVI 169 (365)
T ss_pred HHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEE
Confidence 99999999994 3222 3355566666666663 56789999999873 11222233222 1111 123445
Q ss_pred EEecchhhhhhcc----cc-ccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHhhh
Q 003086 296 ITTRNGKVSQKMG----VK-KARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVGGM 370 (849)
Q Consensus 296 vTtr~~~v~~~~~----~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~ 370 (849)
.+|........+. .. ....+.+++++.++..+++..++.....+....++..+....++..+.|.|-.+..+...
T Consensus 170 ~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~ 249 (365)
T TIGR02928 170 GISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRV 249 (365)
T ss_pred EEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5554332211111 11 114678999999999999999874211111122233344455677778988544332211
Q ss_pred -h--h--cC--CCChHHHHHHHHhhhhhhccCCchHHHHHHHhhhCCChhhHHHHHHhccC--CCCccccHHHHHHHh--
Q 003086 371 -M--L--YK--PPTYNEWRRTADNFRDELAENDDSVMASLQLSYDELPPYLKSCFLSFSVY--PEDCVIRKEQLVYWW-- 439 (849)
Q Consensus 371 -l--~--~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~s~f--p~~~~i~~~~li~~w-- 439 (849)
. + .+ .-+.++...+.+... .....-++..||.+.+..+..++.. ..+..+...++...+
T Consensus 250 a~~~a~~~~~~~it~~~v~~a~~~~~----------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 250 AGEIAEREGAERVTEDHVEKAQEKIE----------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHH----------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 1 1 11 123455555444431 1233456789999888766665422 133446666666533
Q ss_pred HhcCCCcCCCCCCHHHHHHHHHHhhhhccceEEec
Q 003086 440 IGEGFVPQRNGRSSIEAGEDCFSGLTNRCLVEVVD 474 (849)
Q Consensus 440 ia~g~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~ 474 (849)
+++.+ . ...........++..|...|++....
T Consensus 320 ~~~~~-~--~~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 320 VCEDI-G--VDPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHhc-C--CCCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 12211 1 11233466788999999999999864
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.36 E-value=7e-14 Score=155.85 Aligned_cols=213 Identities=23% Similarity=0.247 Sum_probs=145.6
Q ss_pred cCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcccC
Q 003086 555 SECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQ 634 (849)
Q Consensus 555 ~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~ 634 (849)
.+.-+|+.||+++|.+. ..|..+..+.+|+.|+++.| .+...|.+++++.+|++|+|. |+.+..+|..+..+++
T Consensus 42 ~~~v~L~~l~lsnn~~~----~fp~~it~l~~L~~ln~s~n-~i~~vp~s~~~~~~l~~lnL~-~n~l~~lP~~~~~lkn 115 (1081)
T KOG0618|consen 42 EKRVKLKSLDLSNNQIS----SFPIQITLLSHLRQLNLSRN-YIRSVPSSCSNMRNLQYLNLK-NNRLQSLPASISELKN 115 (1081)
T ss_pred hheeeeEEeeccccccc----cCCchhhhHHHHhhcccchh-hHhhCchhhhhhhcchhheec-cchhhcCchhHHhhhc
Confidence 44455999999999987 78999999999999999999 899999999999999999999 7788999999999999
Q ss_pred CcEeeccCCCCccccCccccccccccccCccccc---------------CCCCCCCCCchhhhccccccceeeeeccCcc
Q 003086 635 LRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPA---------------RSSQPEGCRISELKNLTRLRKLGLQLTCGDE 699 (849)
Q Consensus 635 L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~---------------~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 699 (849)
|+.|+++.|.+. ..|..+..++.+..+...++. ..+...+..+.++..++. .|++..|.+.
T Consensus 116 l~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~- 191 (1081)
T KOG0618|consen 116 LQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME- 191 (1081)
T ss_pred ccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-
Confidence 999999999876 677777666666555544331 011111222223333333 4667666543
Q ss_pred cchHhhcCCCCCCeEEEEeecCCCCc--------------hhhhccccCCCCCCCeEEEeccCCCCCCCcCCCCCCCCCc
Q 003086 700 IEEDALVNLRELQFLSISCFDSHGSD--------------LVAKIDELYPPEQLDELSLNFYPGKTSPVWLNPASLPMLR 765 (849)
Q Consensus 700 ~~~~~l~~~~~L~~L~L~~~~~~~~~--------------~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~ 765 (849)
...+..+.+|+.|....|.+...+ .........-+.+|+.++++.......|+|+ +.+++|+
T Consensus 192 --~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi--~~~~nle 267 (1081)
T KOG0618|consen 192 --VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWI--GACANLE 267 (1081)
T ss_pred --hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHH--Hhcccce
Confidence 122333333433333333221100 0001111223558999999987777779999 8999999
Q ss_pred eEEEeeCCcccccccc
Q 003086 766 YLSVCSGNLSKMHDSF 781 (849)
Q Consensus 766 ~L~L~~n~l~~~~~~~ 781 (849)
.|+..+|.++.++...
T Consensus 268 ~l~~n~N~l~~lp~ri 283 (1081)
T KOG0618|consen 268 ALNANHNRLVALPLRI 283 (1081)
T ss_pred EecccchhHHhhHHHH
Confidence 9999999987665443
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.36 E-value=4.3e-14 Score=157.46 Aligned_cols=246 Identities=22% Similarity=0.195 Sum_probs=177.9
Q ss_pred hhhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChh
Q 003086 549 NLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSY 628 (849)
Q Consensus 549 ~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~ 628 (849)
.+|..+..+.+|+.|+..+|.+. .+|..+.....|++|++.+| .++.+|.....+..|++|+|..|+ +..+|..
T Consensus 255 ~lp~wi~~~~nle~l~~n~N~l~----~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~-L~~lp~~ 328 (1081)
T KOG0618|consen 255 NLPEWIGACANLEALNANHNRLV----ALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDN 328 (1081)
T ss_pred cchHHHHhcccceEecccchhHH----hhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhcc-ccccchH
Confidence 56677888888888888888875 67888888888888888888 788888877888888888888554 5555553
Q ss_pred hh-ccc-CCcEeeccCCCCccccCcc-ccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhh
Q 003086 629 VQ-SFI-QLRALDVTHCGSLQYLPKG-FGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDAL 705 (849)
Q Consensus 629 i~-~l~-~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l 705 (849)
+- .+. .|+.|+.+.+.+. ..|.. =..+..|+.|++.++ .+.......|.++.+|+.|+++.|.+...+.+.+
T Consensus 329 ~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN----~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~ 403 (1081)
T KOG0618|consen 329 FLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANN----HLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKL 403 (1081)
T ss_pred HHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcC----cccccchhhhccccceeeeeecccccccCCHHHH
Confidence 32 222 2677777776655 44422 234567888886555 3445556678899999999999999888888999
Q ss_pred cCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCCCcCCCCCCCCCceEEEeeCCccccccccccCc
Q 003086 706 VNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSPVWLNPASLPMLRYLSVCSGNLSKMHDSFWGEN 785 (849)
Q Consensus 706 ~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 785 (849)
.+++.|+.|+|++|.++.. ...+..++.|+.|..+++....+|.. .++|.|+.++++.|+++.+...+...
T Consensus 404 ~kle~LeeL~LSGNkL~~L-----p~tva~~~~L~tL~ahsN~l~~fPe~---~~l~qL~~lDlS~N~L~~~~l~~~~p- 474 (1081)
T KOG0618|consen 404 RKLEELEELNLSGNKLTTL-----PDTVANLGRLHTLRAHSNQLLSFPEL---AQLPQLKVLDLSCNNLSEVTLPEALP- 474 (1081)
T ss_pred hchHHhHHHhcccchhhhh-----hHHHHhhhhhHHHhhcCCceeechhh---hhcCcceEEecccchhhhhhhhhhCC-
Confidence 9999999999999977653 13444577888888888777777844 78999999999999988654333221
Q ss_pred ccccccceeecccccccccccccccccccccceee
Q 003086 786 NTVWKIEALLFESLSDLGIEWTRLQGVMPSLHIVN 820 (849)
Q Consensus 786 ~fp~~L~~L~l~~l~~L~l~~~~~~~~~p~L~~L~ 820 (849)
.| +|++|++.+...+. +....+|.++.+.
T Consensus 475 -~p-~LkyLdlSGN~~l~----~d~~~l~~l~~l~ 503 (1081)
T KOG0618|consen 475 -SP-NLKYLDLSGNTRLV----FDHKTLKVLKSLS 503 (1081)
T ss_pred -Cc-ccceeeccCCcccc----cchhhhHHhhhhh
Confidence 25 99999999876554 2333455544443
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.35 E-value=3.3e-14 Score=127.29 Aligned_cols=157 Identities=25% Similarity=0.246 Sum_probs=123.3
Q ss_pred hcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhccc
Q 003086 554 FSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFI 633 (849)
Q Consensus 554 ~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~ 633 (849)
+.++.+++.|-||+|.+. ..|+.+..|.+|+.|++++| .++++|.+++.+++|++|++..| .+..+|.+|+.++
T Consensus 29 Lf~~s~ITrLtLSHNKl~----~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p 102 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT----VVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFP 102 (264)
T ss_pred ccchhhhhhhhcccCcee----ecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchh-hhhcCccccCCCc
Confidence 446778888889999987 78889999999999999998 89999999999999999999854 4677899999999
Q ss_pred CCcEeeccCCCCc-cccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCC
Q 003086 634 QLRALDVTHCGSL-QYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQ 712 (849)
Q Consensus 634 ~L~~L~l~~~~~~-~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 712 (849)
.|+.|+++.|++. ..+|..|--++.|+.|++..+. -...+.+++++++|+.|.+..|.+-.. +..++.++.|+
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dnd-----fe~lp~dvg~lt~lqil~lrdndll~l-pkeig~lt~lr 176 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-----FEILPPDVGKLTNLQILSLRDNDLLSL-PKEIGDLTRLR 176 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-----cccCChhhhhhcceeEEeeccCchhhC-cHHHHHHHHHH
Confidence 9999999887765 3677777788888888765552 234567788888888888888764333 34566777788
Q ss_pred eEEEEeecCC
Q 003086 713 FLSISCFDSH 722 (849)
Q Consensus 713 ~L~L~~~~~~ 722 (849)
.|.+.+|.++
T Consensus 177 elhiqgnrl~ 186 (264)
T KOG0617|consen 177 ELHIQGNRLT 186 (264)
T ss_pred HHhcccceee
Confidence 8887777543
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.32 E-value=2.4e-12 Score=149.51 Aligned_cols=185 Identities=19% Similarity=0.236 Sum_probs=79.7
Q ss_pred cceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcccCCcEe
Q 003086 559 YLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRAL 638 (849)
Q Consensus 559 ~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 638 (849)
.|+.|+|++|.+. .+|..+. .+|++|+|++| .+..+|..+. .+|+.|+|++|. +..+|..+. .+|+.|
T Consensus 200 ~L~~L~Ls~N~Lt----sLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L 267 (754)
T PRK15370 200 QITTLILDNNELK----SLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSINR-ITELPERLP--SALQSL 267 (754)
T ss_pred CCcEEEecCCCCC----cCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcCCc-cCcCChhHh--CCCCEE
Confidence 3555555555544 3443332 34555555555 4445554332 245555555443 224444332 345555
Q ss_pred eccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCeEEEEe
Q 003086 639 DVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSISC 718 (849)
Q Consensus 639 ~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~ 718 (849)
++++|.+. .+|..+. ++|+.|++..+... . .+..+ .++|+.|++++|.++.++.. + .++|+.|++++
T Consensus 268 ~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt----~-LP~~l--p~sL~~L~Ls~N~Lt~LP~~-l--~~sL~~L~Ls~ 334 (754)
T PRK15370 268 DLFHNKIS-CLPENLP--EELRYLSVYDNSIR----T-LPAHL--PSGITHLNVQSNSLTALPET-L--PPGLKTLEAGE 334 (754)
T ss_pred ECcCCccC-ccccccC--CCCcEEECCCCccc----c-Ccccc--hhhHHHHHhcCCccccCCcc-c--cccceeccccC
Confidence 55555444 3444332 24555544333211 0 11111 12445555555544432211 1 23555555555
Q ss_pred ecCCCCchhhhccccCCCCCCCeEEEeccCCCCCCCcCCCCCCCCCceEEEeeCCcccccc
Q 003086 719 FDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSPVWLNPASLPMLRYLSVCSGNLSKMHD 779 (849)
Q Consensus 719 ~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~ 779 (849)
|.++.. + ..+ +++|+.|+++++....+|..+ .++|+.|+|++|+++.++.
T Consensus 335 N~Lt~L--P---~~l--~~sL~~L~Ls~N~L~~LP~~l----p~~L~~LdLs~N~Lt~LP~ 384 (754)
T PRK15370 335 NALTSL--P---ASL--PPELQVLDVSKNQITVLPETL----PPTITTLDVSRNALTNLPE 384 (754)
T ss_pred CccccC--C---hhh--cCcccEEECCCCCCCcCChhh----cCCcCEEECCCCcCCCCCH
Confidence 543321 0 011 245555555554433334322 2455666666655554443
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.30 E-value=9.7e-12 Score=143.55 Aligned_cols=219 Identities=21% Similarity=0.145 Sum_probs=125.9
Q ss_pred CCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcccCCc
Q 003086 557 CRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLR 636 (849)
Q Consensus 557 l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 636 (849)
.++|++|+|++|.+. .+|.. .++|+.|+|++| .+..+|..+ .+|+.|++++|. +..+|.. .++|+
T Consensus 241 p~~Lk~LdLs~N~Lt----sLP~l---p~sL~~L~Ls~N-~L~~Lp~lp---~~L~~L~Ls~N~-Lt~LP~~---p~~L~ 305 (788)
T PRK15387 241 PPELRTLEVSGNQLT----SLPVL---PPGLLELSIFSN-PLTHLPALP---SGLCKLWIFGNQ-LTSLPVL---PPGLQ 305 (788)
T ss_pred CCCCcEEEecCCccC----cccCc---ccccceeeccCC-chhhhhhch---hhcCEEECcCCc-ccccccc---ccccc
Confidence 466777777777765 44432 356677777777 566666522 456677777654 4455542 35678
Q ss_pred EeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhcc-ccccceeeeeccCcccchHhhcCCCCCCeEE
Q 003086 637 ALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNL-TRLRKLGLQLTCGDEIEEDALVNLRELQFLS 715 (849)
Q Consensus 637 ~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 715 (849)
.|++++|.+. .+|... .+|+.|++.++.. . .+..+ .+|+.|++++|.++.++. ...+|+.|+
T Consensus 306 ~LdLS~N~L~-~Lp~lp---~~L~~L~Ls~N~L----~-----~LP~lp~~Lq~LdLS~N~Ls~LP~----lp~~L~~L~ 368 (788)
T PRK15387 306 ELSVSDNQLA-SLPALP---SELCKLWAYNNQL----T-----SLPTLPSGLQELSVSDNQLASLPT----LPSELYKLW 368 (788)
T ss_pred eeECCCCccc-cCCCCc---ccccccccccCcc----c-----cccccccccceEecCCCccCCCCC----CCcccceeh
Confidence 8888877766 455422 2455555443321 1 11112 467788888887665432 134677777
Q ss_pred EEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCCCcCCCCCCCCCceEEEeeCCccccccccccCcccccccceee
Q 003086 716 ISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSPVWLNPASLPMLRYLSVCSGNLSKMHDSFWGENNTVWKIEALL 795 (849)
Q Consensus 716 L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~fp~~L~~L~ 795 (849)
+++|.+... ..+ +.+|+.|+++++....+|.. .++|+.|++++|.++.++.. +. .|+.|.
T Consensus 369 Ls~N~L~~L------P~l--~~~L~~LdLs~N~Lt~LP~l-----~s~L~~LdLS~N~LssIP~l------~~-~L~~L~ 428 (788)
T PRK15387 369 AYNNRLTSL------PAL--PSGLKELIVSGNRLTSLPVL-----PSELKELMVSGNRLTSLPML------PS-GLLSLS 428 (788)
T ss_pred hhccccccC------ccc--ccccceEEecCCcccCCCCc-----ccCCCEEEccCCcCCCCCcc------hh-hhhhhh
Confidence 777765431 111 34678888877655444532 35788888888888766531 11 455554
Q ss_pred cccccccccccccccccccccceeeecccccCcccCcCCcccccc
Q 003086 796 FESLSDLGIEWTRLQGVMPSLHIVNASWCPELDSFPIEDVGFRGG 840 (849)
Q Consensus 796 l~~l~~L~l~~~~~~~~~p~L~~L~i~~c~~L~~l~l~~n~l~~~ 840 (849)
+.+ |.+. .+|. .+.++++|+.|.+++|.|++.
T Consensus 429 Ls~--------NqLt-~LP~----sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 429 VYR--------NQLT-RLPE----SLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred hcc--------Cccc-ccCh----HHhhccCCCeEECCCCCCCch
Confidence 443 2221 2332 244566677777777777754
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.30 E-value=2e-13 Score=147.26 Aligned_cols=225 Identities=21% Similarity=0.140 Sum_probs=132.2
Q ss_pred hhhhhcCCCcceEEecCCcccccc-ccccccccCCCCccceEeccCCCCCc-------ccCccccCCCCCcEEeeccccC
Q 003086 550 LATKFSECRYLRVLDISRSIFELP-LKGLLSQTGSLQHLSYLCLSNTHPLI-------HLPPSLKKLKNLQILDVSYCQN 621 (849)
Q Consensus 550 ~~~~~~~l~~Lr~L~L~~~~~~~~-~~~~p~~~~~l~~Lr~L~L~~~~~~~-------~lp~~i~~L~~L~~L~L~~~~~ 621 (849)
....|..+..|++|+++++.+... ...++..+...+.|++|+++++ .+. .++..+..+++|+.|++++|..
T Consensus 15 ~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 15 ATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL 93 (319)
T ss_pred hHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence 445667777899999999987421 1134556677788999999887 443 2344567788999999998877
Q ss_pred CccCChhhhcccC---CcEeeccCCCCcc----ccCcccccc-ccccccCcccccCCCCCCCCCchhhhccccccceeee
Q 003086 622 LKMLPSYVQSFIQ---LRALDVTHCGSLQ----YLPKGFGKL-LNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQ 693 (849)
Q Consensus 622 ~~~lp~~i~~l~~---L~~L~l~~~~~~~----~~p~~i~~l-~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 693 (849)
....+..+..+.+ |++|++++|.+.. .+...+..+ ++|+.|++..+.............+..+++|+.|++.
T Consensus 94 ~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~ 173 (319)
T cd00116 94 GPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLA 173 (319)
T ss_pred ChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECc
Confidence 6666666666666 9999999887652 122234455 6777777655532211011122345556677777777
Q ss_pred eccCcccc----hHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCC-CCCcCC---CCCCCCCc
Q 003086 694 LTCGDEIE----EDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKT-SPVWLN---PASLPMLR 765 (849)
Q Consensus 694 ~~~~~~~~----~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-~p~~~~---~~~l~~L~ 765 (849)
+|.+.... ...+..+++|+.|++++|.+.+.........+..+++|+.|+++++.... .+..+. ....+.|+
T Consensus 174 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~ 253 (319)
T cd00116 174 NNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLL 253 (319)
T ss_pred CCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCce
Confidence 77654321 13344556777777777655433222222334445667777666543211 000000 01235666
Q ss_pred eEEEeeCCcc
Q 003086 766 YLSVCSGNLS 775 (849)
Q Consensus 766 ~L~L~~n~l~ 775 (849)
+|++++|.++
T Consensus 254 ~L~l~~n~i~ 263 (319)
T cd00116 254 TLSLSCNDIT 263 (319)
T ss_pred EEEccCCCCC
Confidence 6776666654
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.28 E-value=2.2e-13 Score=137.93 Aligned_cols=116 Identities=22% Similarity=0.177 Sum_probs=95.3
Q ss_pred cchhhhhhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCc-cccCCCCCcEEeeccccCC
Q 003086 544 NNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPP-SLKKLKNLQILDVSYCQNL 622 (849)
Q Consensus 544 ~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~~ 622 (849)
|.+..+.+..|+.++.||.|||++|.|+ ...|++|.+|..|-.|-+.++..|+.+|. .|++|..||-|.+.-|...
T Consensus 77 N~I~~iP~~aF~~l~~LRrLdLS~N~Is---~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~ 153 (498)
T KOG4237|consen 77 NQISSIPPGAFKTLHRLRRLDLSKNNIS---FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHIN 153 (498)
T ss_pred CCcccCChhhccchhhhceecccccchh---hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhc
Confidence 6666677889999999999999999998 47899999999999888888449999997 4789999999999877777
Q ss_pred ccCChhhhcccCCcEeeccCCCCccccCc-cccccccccccC
Q 003086 623 KMLPSYVQSFIQLRALDVTHCGSLQYLPK-GFGKLLNLEVLL 663 (849)
Q Consensus 623 ~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~ 663 (849)
......+..+++|+.|.+..|.+. .++. .+..+.+++++.
T Consensus 154 Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlh 194 (498)
T KOG4237|consen 154 CIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLH 194 (498)
T ss_pred chhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHh
Confidence 777888899999999988888765 4444 466666666654
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.24 E-value=1.4e-12 Score=140.67 Aligned_cols=247 Identities=20% Similarity=0.064 Sum_probs=131.1
Q ss_pred ccCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccc---cccccccccCCCCccceEeccCCCCCcccCcc
Q 003086 528 NLKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFEL---PLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPS 604 (849)
Q Consensus 528 ~~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~---~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~ 604 (849)
...++.+.+.+....... ...++..+...+.|+.|+++++.+.. .+..++..+..+++|++|+|++|......+..
T Consensus 22 l~~L~~l~l~~~~l~~~~-~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEA-AKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HhhccEEeecCCCCcHHH-HHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 344555555544321111 12345556667777777777776541 11223445666777888888777433344444
Q ss_pred ccCCCC---CcEEeeccccCCc----cCChhhhcc-cCCcEeeccCCCCcc----ccCccccccccccccCcccccCCCC
Q 003086 605 LKKLKN---LQILDVSYCQNLK----MLPSYVQSF-IQLRALDVTHCGSLQ----YLPKGFGKLLNLEVLLGFRPARSSQ 672 (849)
Q Consensus 605 i~~L~~---L~~L~L~~~~~~~----~lp~~i~~l-~~L~~L~l~~~~~~~----~~p~~i~~l~~L~~L~~~~~~~~~~ 672 (849)
+..+.+ |+.|++++|.... .+...+..+ ++|+.|++++|.+.. .++..+..+.+|++|++..+.....
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 180 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA 180 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence 444444 7888887665432 223344555 777888887777652 2233345556677776554422110
Q ss_pred CCCCCchhhhccccccceeeeeccCcccch----HhhcCCCCCCeEEEEeecCCCCchhhhcccc-CCCCCCCeEEEecc
Q 003086 673 PEGCRISELKNLTRLRKLGLQLTCGDEIEE----DALVNLRELQFLSISCFDSHGSDLVAKIDEL-YPPEQLDELSLNFY 747 (849)
Q Consensus 673 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l-~~~~~L~~L~l~~~ 747 (849)
........+..+++|+.|++++|.+..... ..+..+++|+.|++++|.+++.........+ .+.+.|++|++.++
T Consensus 181 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC
Confidence 001112234455677777777776543322 3455667788888877765542222111111 12467777777765
Q ss_pred CCCC-----CCCcCCCCCCCCCceEEEeeCCcccc
Q 003086 748 PGKT-----SPVWLNPASLPMLRYLSVCSGNLSKM 777 (849)
Q Consensus 748 ~~~~-----~p~~~~~~~l~~L~~L~L~~n~l~~~ 777 (849)
.... +...+ ..+++|++|++++|.+...
T Consensus 261 ~i~~~~~~~l~~~~--~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 261 DITDDGAKDLAEVL--AEKESLLELDLRGNKFGEE 293 (319)
T ss_pred CCCcHHHHHHHHHH--hcCCCccEEECCCCCCcHH
Confidence 3210 01111 3446777777777666543
No 26
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.22 E-value=2.2e-10 Score=122.85 Aligned_cols=261 Identities=15% Similarity=0.155 Sum_probs=146.1
Q ss_pred CccccccccHHHHHHHHhcc---CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEA---EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLR 237 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 237 (849)
.+|+|+++.++.+..++... ......+.|+|++|+||||||+.+++. ....+ .++... .......+..++.
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~---~~~~~~-~~~~~~~l~~~l~ 98 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANE--MGVNI---RITSGP-ALEKPGDLAAILT 98 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHH--hCCCe---EEEecc-cccChHHHHHHHH
Confidence 46999999999998877642 334567889999999999999999884 22211 122211 1111112222222
Q ss_pred HhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCC-------------------CCC-CceEEEE
Q 003086 238 NLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLP-------------------KGK-GSSIIIT 297 (849)
Q Consensus 238 ~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~-------------------~~~-~s~ilvT 297 (849)
.+ ++.-+|++||+........+.+...+. ..+ .+-|..|
T Consensus 99 ~l---------------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at 157 (328)
T PRK00080 99 NL---------------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGAT 157 (328)
T ss_pred hc---------------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeec
Confidence 22 123456666665422222222211110 011 3445666
Q ss_pred ecchhhhhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHhhhhhcCCCC
Q 003086 298 TRNGKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVGGMMLYKPPT 377 (849)
Q Consensus 298 tr~~~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l~~~~~~ 377 (849)
|+...+...........+++++++.++..+++.+.+.... ....++....|++.|+|.|-.+..+...+.
T Consensus 158 ~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~-----~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~----- 227 (328)
T PRK00080 158 TRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILG-----VEIDEEGALEIARRSRGTPRIANRLLRRVR----- 227 (328)
T ss_pred CCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHHcCCCchHHHHHHHHHH-----
Confidence 6654443322111114689999999999999998875432 223456788999999999965555544321
Q ss_pred hHHHHHHHHhhhhhhcc-CCchHHHHHHHhhhCCChhhHHHHH-HhccCCCCccccHHHHHHHhHhcCCCcCCCCCCHHH
Q 003086 378 YNEWRRTADNFRDELAE-NDDSVMASLQLSYDELPPYLKSCFL-SFSVYPEDCVIRKEQLVYWWIGEGFVPQRNGRSSIE 455 (849)
Q Consensus 378 ~~~w~~~~~~~~~~~~~-~~~~~~~~l~~sy~~L~~~~k~cfl-~~s~fp~~~~i~~~~li~~wia~g~i~~~~~~~~e~ 455 (849)
.|...... ..+.. .-......+...+..|++..+..+. ....|+.+ .+..+.+.... | ...+
T Consensus 228 --~~a~~~~~--~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g--------~~~~ 291 (328)
T PRK00080 228 --DFAQVKGD--GVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---G--------EERD 291 (328)
T ss_pred --HHHHHcCC--CCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---C--------CCcc
Confidence 22211100 00100 1122334456677888888777775 67777765 46655554332 1 1123
Q ss_pred HHHHHHH-hhhhccceEEec
Q 003086 456 AGEDCFS-GLTNRCLVEVVD 474 (849)
Q Consensus 456 ~~~~~~~-~L~~~~ll~~~~ 474 (849)
.+++.++ .|++.+|++...
T Consensus 292 ~~~~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 292 TIEDVYEPYLIQQGFIQRTP 311 (328)
T ss_pred hHHHHhhHHHHHcCCcccCC
Confidence 4555566 899999997543
No 27
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.22 E-value=2e-10 Score=122.53 Aligned_cols=274 Identities=14% Similarity=0.077 Sum_probs=143.6
Q ss_pred CccccccccHHHHHHHHhcc---CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEA---EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLR 237 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 237 (849)
.+|+|+++.++++..++... ......+.|+|++|+|||+||+.+.+. ....+ ..+..+....... +...+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~~~~~-l~~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALEKPGD-LAAILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhcCchh-HHHHHH
Confidence 36999999999998888642 223556889999999999999999874 22211 1222111111111 122222
Q ss_pred HhcCCCC--CCCH----HHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCCCCceEEEEecchhhhhhccccc
Q 003086 238 NLGDASA--GDDR----GELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGKGSSIIITTRNGKVSQKMGVKK 311 (849)
Q Consensus 238 ~l~~~~~--~~~~----~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~s~ilvTtr~~~v~~~~~~~~ 311 (849)
.+....- -++. ....+.+...+.+.+..+|+|+... ...+ ...+ .+.+-|..||+...+........
T Consensus 78 ~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~--~~~~---~~~~--~~~~li~~t~~~~~l~~~l~sR~ 150 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPS--ARSV---RLDL--PPFTLVGATTRAGMLTSPLRDRF 150 (305)
T ss_pred hcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCcc--ccce---eecC--CCeEEEEecCCccccCHHHHhhc
Confidence 2221110 0000 0112223333333334444444332 1111 0111 11445566777644433221111
Q ss_pred cccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHhhhhhcCCCChHHHHHHHHhhhhh
Q 003086 312 ARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVGGMMLYKPPTYNEWRRTADNFRDE 391 (849)
Q Consensus 312 ~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l~~~~~~~~~w~~~~~~~~~~ 391 (849)
...+++++++.++..+++.+.+.... ....++....|++.|+|.|-.+..++..+ |......-...
T Consensus 151 ~~~~~l~~l~~~e~~~il~~~~~~~~-----~~~~~~al~~ia~~~~G~pR~~~~ll~~~---------~~~a~~~~~~~ 216 (305)
T TIGR00635 151 GIILRLEFYTVEELAEIVSRSAGLLN-----VEIEPEAALEIARRSRGTPRIANRLLRRV---------RDFAQVRGQKI 216 (305)
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHhC-----CCcCHHHHHHHHHHhCCCcchHHHHHHHH---------HHHHHHcCCCC
Confidence 14678999999999999998875321 22335677899999999997665554432 11100000000
Q ss_pred hcc-CCchHHHHHHHhhhCCChhhHHHHH-HhccCCCCccccHHHHHHHhHhcCCCcCCCCCCHHHHHHHHHH-hhhhcc
Q 003086 392 LAE-NDDSVMASLQLSYDELPPYLKSCFL-SFSVYPEDCVIRKEQLVYWWIGEGFVPQRNGRSSIEAGEDCFS-GLTNRC 468 (849)
Q Consensus 392 ~~~-~~~~~~~~l~~sy~~L~~~~k~cfl-~~s~fp~~~~i~~~~li~~wia~g~i~~~~~~~~e~~~~~~~~-~L~~~~ 468 (849)
+.. ........+...|..++++.+..+. ..+.++.+ .+..+.+.... | .....++..++ .|++++
T Consensus 217 it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g--------~~~~~~~~~~e~~Li~~~ 284 (305)
T TIGR00635 217 INRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G--------EDADTIEDVYEPYLLQIG 284 (305)
T ss_pred cCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---C--------CCcchHHHhhhHHHHHcC
Confidence 000 0111222255667888888777666 55667543 34544443322 1 12234666677 699999
Q ss_pred ceEEe
Q 003086 469 LVEVV 473 (849)
Q Consensus 469 ll~~~ 473 (849)
|++..
T Consensus 285 li~~~ 289 (305)
T TIGR00635 285 FLQRT 289 (305)
T ss_pred CcccC
Confidence 99743
No 28
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.21 E-value=2.4e-11 Score=141.23 Aligned_cols=201 Identities=18% Similarity=0.203 Sum_probs=146.8
Q ss_pred CcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcccCCcE
Q 003086 558 RYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRA 637 (849)
Q Consensus 558 ~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~ 637 (849)
.+..+|+++++.+. .+|..+. ++|+.|+|++| .+..+|..+. .+|++|++++|. +..+|..+. .+|+.
T Consensus 178 ~~~~~L~L~~~~Lt----sLP~~Ip--~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~ 245 (754)
T PRK15370 178 NNKTELRLKILGLT----TIPACIP--EQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQE 245 (754)
T ss_pred cCceEEEeCCCCcC----cCCcccc--cCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccE
Confidence 35688999998886 6776654 58999999999 8899998665 599999999765 567887664 47999
Q ss_pred eeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCeEEEE
Q 003086 638 LDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSIS 717 (849)
Q Consensus 638 L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~ 717 (849)
|++++|.+. .+|..+. ++|+.|++..+.. . ..+..+. ++|+.|++++|.++.++. .+ .++|+.|+++
T Consensus 246 L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L----~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~-~l--p~sL~~L~Ls 312 (754)
T PRK15370 246 MELSINRIT-ELPERLP--SALQSLDLFHNKI----S-CLPENLP--EELRYLSVYDNSIRTLPA-HL--PSGITHLNVQ 312 (754)
T ss_pred EECcCCccC-cCChhHh--CCCCEEECcCCcc----C-ccccccC--CCCcEEECCCCccccCcc-cc--hhhHHHHHhc
Confidence 999999987 7777664 5789998765532 2 2233332 589999999998776543 22 2478899999
Q ss_pred eecCCCCchhhhccccCCCCCCCeEEEeccCCCCCCCcCCCCCCCCCceEEEeeCCccccccccccCcccccccceeecc
Q 003086 718 CFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSPVWLNPASLPMLRYLSVCSGNLSKMHDSFWGENNTVWKIEALLFE 797 (849)
Q Consensus 718 ~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~fp~~L~~L~l~ 797 (849)
+|.+.... .. .+++|+.|.++++....+|..+ .++|+.|++++|+++.++..+ .+ +|+.|++.
T Consensus 313 ~N~Lt~LP-----~~--l~~sL~~L~Ls~N~Lt~LP~~l----~~sL~~L~Ls~N~L~~LP~~l-----p~-~L~~LdLs 375 (754)
T PRK15370 313 SNSLTALP-----ET--LPPGLKTLEAGENALTSLPASL----PPELQVLDVSKNQITVLPETL-----PP-TITTLDVS 375 (754)
T ss_pred CCccccCC-----cc--ccccceeccccCCccccCChhh----cCcccEEECCCCCCCcCChhh-----cC-CcCEEECC
Confidence 88765321 11 2468999999887655556544 379999999999998765433 13 88888887
Q ss_pred ccc
Q 003086 798 SLS 800 (849)
Q Consensus 798 ~l~ 800 (849)
++.
T Consensus 376 ~N~ 378 (754)
T PRK15370 376 RNA 378 (754)
T ss_pred CCc
Confidence 653
No 29
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.19 E-value=6e-11 Score=121.55 Aligned_cols=195 Identities=19% Similarity=0.236 Sum_probs=103.9
Q ss_pred cccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHH-------
Q 003086 163 VVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSM------- 235 (849)
Q Consensus 163 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i------- 235 (849)
|+||++++++|.+++..+. ...+.|+|+.|+|||+|++.+.+. .+..-..++|+......... ....+
T Consensus 1 F~gR~~el~~l~~~l~~~~--~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~~~~~-~~~~~~~~~~~~ 75 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP--SQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEESNES-SLRSFIEETSLA 75 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTBSHHH-HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhc--CcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccchhhh-HHHHHHHHHHHH
Confidence 7899999999999998753 467899999999999999999883 22211134455444333222 12221
Q ss_pred ---HHHhc----CCC-------CCCCHHHHHHHHHHHh--cCccEEEEEcCCCccC------HHHHHHHHhcCC---CCC
Q 003086 236 ---LRNLG----DAS-------AGDDRGELLRKINQYL--LGKRYLIVMDDVWGED------LAWWRRIYEGLP---KGK 290 (849)
Q Consensus 236 ---~~~l~----~~~-------~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~------~~~~~~l~~~l~---~~~ 290 (849)
...+. ... ...........+.+.+ .+++++||+||+.... ......+...+. ...
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 155 (234)
T PF01637_consen 76 DELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQ 155 (234)
T ss_dssp CHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----T
T ss_pred HHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccC
Confidence 11121 110 0112223333333333 2345999999997633 232333333333 344
Q ss_pred CceEEEEecchhhhhh-cc-----ccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHH
Q 003086 291 GSSIIITTRNGKVSQK-MG-----VKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAI 364 (849)
Q Consensus 291 ~s~ilvTtr~~~v~~~-~~-----~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 364 (849)
...+|+++....+... .. ......+.+++|+.+++++++...+-.. . .. +.-++..++|+..+||+|..|
T Consensus 156 ~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~--~~-~~~~~~~~~i~~~~gG~P~~l 231 (234)
T PF01637_consen 156 NVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-I--KL-PFSDEDIEEIYSLTGGNPRYL 231 (234)
T ss_dssp TEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC----------HHHHHHHHHHHTT-HHHH
T ss_pred CceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-h--cc-cCCHHHHHHHHHHhCCCHHHH
Confidence 5555666655444433 11 0111358999999999999999976322 1 01 223566789999999999987
Q ss_pred HH
Q 003086 365 KA 366 (849)
Q Consensus 365 ~~ 366 (849)
..
T Consensus 232 ~~ 233 (234)
T PF01637_consen 232 QE 233 (234)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 30
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.17 E-value=1.2e-10 Score=134.56 Aligned_cols=224 Identities=19% Similarity=0.075 Sum_probs=134.3
Q ss_pred hhhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChh
Q 003086 549 NLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSY 628 (849)
Q Consensus 549 ~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~ 628 (849)
.+|..+. ++|+.|++++|.++ .+|. .+++|++|+|++| .+..+|.. .++|+.|++++|. +..+|..
T Consensus 215 sLP~~l~--~~L~~L~L~~N~Lt----~LP~---lp~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N~-L~~Lp~l 280 (788)
T PRK15387 215 TLPDCLP--AHITTLVIPDNNLT----SLPA---LPPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSNP-LTHLPAL 280 (788)
T ss_pred cCCcchh--cCCCEEEccCCcCC----CCCC---CCCCCcEEEecCC-ccCcccCc---ccccceeeccCCc-hhhhhhc
Confidence 3455443 36788888888776 4554 2477888888888 77777753 3577888887664 4455542
Q ss_pred hhcccCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCC
Q 003086 629 VQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNL 708 (849)
Q Consensus 629 i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~ 708 (849)
..+|+.|++++|.+. .+|.. +++|+.|++..|... . .+. -..+|+.|++.+|.++.++. ..
T Consensus 281 ---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~----~-Lp~---lp~~L~~L~Ls~N~L~~LP~----lp 341 (788)
T PRK15387 281 ---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLA----S-LPA---LPSELCKLWAYNNQLTSLPT----LP 341 (788)
T ss_pred ---hhhcCEEECcCCccc-ccccc---ccccceeECCCCccc----c-CCC---CcccccccccccCccccccc----cc
Confidence 246777888888776 55542 456777776555321 1 111 12356777788777654432 12
Q ss_pred CCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCCCcCCCCCCCCCceEEEeeCCccccccccccCcccc
Q 003086 709 RELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSPVWLNPASLPMLRYLSVCSGNLSKMHDSFWGENNTV 788 (849)
Q Consensus 709 ~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~fp 788 (849)
.+|+.|+|++|.++.. ..+ +++|..|.++++....+|. ..++|+.|+|++|++..++.. ++
T Consensus 342 ~~Lq~LdLS~N~Ls~L------P~l--p~~L~~L~Ls~N~L~~LP~-----l~~~L~~LdLs~N~Lt~LP~l------~s 402 (788)
T PRK15387 342 SGLQELSVSDNQLASL------PTL--PSELYKLWAYNNRLTSLPA-----LPSGLKELIVSGNRLTSLPVL------PS 402 (788)
T ss_pred cccceEecCCCccCCC------CCC--CcccceehhhccccccCcc-----cccccceEEecCCcccCCCCc------cc
Confidence 4788888888866542 111 3467777777655444453 235788899988888766532 22
Q ss_pred cccceeecccccccccccccccccccccceeeecccccCcccC
Q 003086 789 WKIEALLFESLSDLGIEWTRLQGVMPSLHIVNASWCPELDSFP 831 (849)
Q Consensus 789 ~~L~~L~l~~l~~L~l~~~~~~~~~p~L~~L~i~~c~~L~~l~ 831 (849)
+|+.|++.+.. |. +++. .++.|+.|+++++ +|+.||
T Consensus 403 -~L~~LdLS~N~-Ls-sIP~---l~~~L~~L~Ls~N-qLt~LP 438 (788)
T PRK15387 403 -ELKELMVSGNR-LT-SLPM---LPSGLLSLSVYRN-QLTRLP 438 (788)
T ss_pred -CCCEEEccCCc-CC-CCCc---chhhhhhhhhccC-cccccC
Confidence 77777777643 33 2221 1234555555543 355554
No 31
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.13 E-value=2.7e-09 Score=119.62 Aligned_cols=291 Identities=15% Similarity=0.149 Sum_probs=187.9
Q ss_pred HHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCC-ccCHHHHHHHHHHHhcCCCC--C--
Q 003086 171 RKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQ-TFTEEQIMRSMLRNLGDASA--G-- 245 (849)
Q Consensus 171 ~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~--~-- 245 (849)
.++.+.|... .+.+.+.|..++|.|||||+..... + ...=..+.|.++.+ +.++..+...++..++...+ +
T Consensus 25 ~rL~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~--~-~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~ 100 (894)
T COG2909 25 PRLLDRLRRA-NDYRLILISAPAGFGKTTLLAQWRE--L-AADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDE 100 (894)
T ss_pred HHHHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHH--h-cCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHH
Confidence 4566666654 3589999999999999999998864 1 12224589999975 56788899999998885433 1
Q ss_pred ----------CCHHHHHHHHHHHhc--CccEEEEEcCCCccC-HHHHHHHHhcCCCCC-CceEEEEecchhhhhhcc--c
Q 003086 246 ----------DDRGELLRKINQYLL--GKRYLIVMDDVWGED-LAWWRRIYEGLPKGK-GSSIIITTRNGKVSQKMG--V 309 (849)
Q Consensus 246 ----------~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~-~~~~~~l~~~l~~~~-~s~ilvTtr~~~v~~~~~--~ 309 (849)
.+...+...+..-+. .++..+||||..-.. +.--..+...+...+ +-.+|||||+..-..... .
T Consensus 101 a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRl 180 (894)
T COG2909 101 AQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRL 180 (894)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceee
Confidence 133444555555443 468999999986522 222333444444455 889999999853222111 1
Q ss_pred cccccccC----CCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHhhhhhcCCCChHHHHHHH
Q 003086 310 KKARMHFP----KFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVGGMMLYKPPTYNEWRRTA 385 (849)
Q Consensus 310 ~~~~~~~l----~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l~~~~~~~~~w~~~~ 385 (849)
.. ...++ -.|+.+|+.++|...... +-.....+.+.+...|-+-|+..++-.++.+.. .+.-...+
T Consensus 181 r~-~llEi~~~~Lrf~~eE~~~fl~~~~~l--------~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~-~~q~~~~L 250 (894)
T COG2909 181 RD-ELLEIGSEELRFDTEEAAAFLNDRGSL--------PLDAADLKALYDRTEGWAAALQLIALALRNNTS-AEQSLRGL 250 (894)
T ss_pred hh-hHHhcChHhhcCChHHHHHHHHHcCCC--------CCChHHHHHHHhhcccHHHHHHHHHHHccCCCc-HHHHhhhc
Confidence 11 22332 348999999999887622 222556788999999999999999888873322 33222222
Q ss_pred HhhhhhhccCCchHHHHHHHhhhCCChhhHHHHHHhccCCCCccccHHHHHHHhHhcCCCcCCCCCCHHHHHHHHHHhhh
Q 003086 386 DNFRDELAENDDSVMASLQLSYDELPPYLKSCFLSFSVYPEDCVIRKEQLVYWWIGEGFVPQRNGRSSIEAGEDCFSGLT 465 (849)
Q Consensus 386 ~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~wia~g~i~~~~~~~~e~~~~~~~~~L~ 465 (849)
.-....+. --...=-++.||+++|..++-||+++.- . ..|+..- +-++.+...+++|.
T Consensus 251 sG~~~~l~------dYL~eeVld~Lp~~l~~FLl~~svl~~f---~-~eL~~~L------------tg~~ng~amLe~L~ 308 (894)
T COG2909 251 SGAASHLS------DYLVEEVLDRLPPELRDFLLQTSVLSRF---N-DELCNAL------------TGEENGQAMLEELE 308 (894)
T ss_pred cchHHHHH------HHHHHHHHhcCCHHHHHHHHHHHhHHHh---h-HHHHHHH------------hcCCcHHHHHHHHH
Confidence 21111111 1123335789999999999999998642 2 2333221 12345777899999
Q ss_pred hccceEEeccccCCceeeeeecHHHHHHHHHHhhc
Q 003086 466 NRCLVEVVDKAYNKMISTCKIHDMVRDLVIRVAEE 500 (849)
Q Consensus 466 ~~~ll~~~~~~~~~~~~~~~~Hdlv~~~~~~~~~~ 500 (849)
+++|+-..- ++....|+.|.++.||.+.-.+.
T Consensus 309 ~~gLFl~~L---dd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 309 RRGLFLQRL---DDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred hCCCceeee---cCCCceeehhHHHHHHHHhhhcc
Confidence 999886533 22336799999999999876654
No 32
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.11 E-value=3e-11 Score=142.71 Aligned_cols=230 Identities=26% Similarity=0.261 Sum_probs=150.1
Q ss_pred CCCcceEEecCCcc--ccccccccc-cccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcc
Q 003086 556 ECRYLRVLDISRSI--FELPLKGLL-SQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSF 632 (849)
Q Consensus 556 ~l~~Lr~L~L~~~~--~~~~~~~~p-~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l 632 (849)
.++.|+.|-+.+|. +. .++ ..|..+++||+|||++|.....+|.+|+.|.+|++|+++ .+.+..+|.++++|
T Consensus 543 ~~~~L~tLll~~n~~~l~----~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~-~t~I~~LP~~l~~L 617 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLL----EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS-DTGISHLPSGLGNL 617 (889)
T ss_pred CCCccceEEEeecchhhh----hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccccc-CCCccccchHHHHH
Confidence 34578888888885 33 333 347889999999999998899999999999999999999 45678999999999
Q ss_pred cCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCC
Q 003086 633 IQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQ 712 (849)
Q Consensus 633 ~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 712 (849)
+.|.+|++..+......|..+..|++|++|.++... .........++.++.+|+.+.+..... .....+..++.|.
T Consensus 618 k~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~--~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~ 693 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA--LSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLR 693 (889)
T ss_pred HhhheeccccccccccccchhhhcccccEEEeeccc--cccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHH
Confidence 999999999887765666666679999999877654 222455666788888888888765532 1112223333333
Q ss_pred ----eEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCC-CCcCCC---CC-CCCCceEEEeeCCcccccccccc
Q 003086 713 ----FLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTS-PVWLNP---AS-LPMLRYLSVCSGNLSKMHDSFWG 783 (849)
Q Consensus 713 ----~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~-p~~~~~---~~-l~~L~~L~L~~n~l~~~~~~~~~ 783 (849)
.+.+.++ ........+..+.+|+.|.+.++..... ..|... .. +|+|..+.+.++..... ..+.
T Consensus 694 ~~~~~l~~~~~-----~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~--l~~~ 766 (889)
T KOG4658|consen 694 SLLQSLSIEGC-----SKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRD--LTWL 766 (889)
T ss_pred HHhHhhhhccc-----ccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccc--cchh
Confidence 2222211 1112344556678888898887765421 123211 11 33444444433221111 1111
Q ss_pred Ccccccccceeecccccccc
Q 003086 784 ENNTVWKIEALLFESLSDLG 803 (849)
Q Consensus 784 ~~~fp~~L~~L~l~~l~~L~ 803 (849)
..+| +|+.|.+..|..++
T Consensus 767 -~f~~-~L~~l~l~~~~~~e 784 (889)
T KOG4658|consen 767 -LFAP-HLTSLSLVSCRLLE 784 (889)
T ss_pred -hccC-cccEEEEecccccc
Confidence 1234 99999988888777
No 33
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.01 E-value=5.6e-08 Score=109.97 Aligned_cols=303 Identities=9% Similarity=0.082 Sum_probs=164.8
Q ss_pred CCCCccccccccHHHHHHHHhcc---CCCeEEEEEEcCCCCcHHHHHHHHhcChhh---hcccC--ceEEEEeCCccCHH
Q 003086 158 YDHTLVVGLEGDTRKIKDWLFEA---EEGILAIGVVGMGGLGKTTIAQKVFNDREI---ENWFE--RRMWVSVSQTFTEE 229 (849)
Q Consensus 158 ~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~f~--~~~wv~~s~~~~~~ 229 (849)
..++.+.|||+++++|...|... .....++.|+|++|+|||++++.|.+.-.. +.... .+++|.+....+..
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~ 831 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPN 831 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHH
Confidence 34567899999999999888653 223357789999999999999999874211 11122 25788887777889
Q ss_pred HHHHHHHHHhcCCCC--CCCHHHHHHHHHHHhc---CccEEEEEcCCCccCHHHHHHHHhcC--CCCCCceEEE--Eecc
Q 003086 230 QIMRSMLRNLGDASA--GDDRGELLRKINQYLL---GKRYLIVMDDVWGEDLAWWRRIYEGL--PKGKGSSIII--TTRN 300 (849)
Q Consensus 230 ~~~~~i~~~l~~~~~--~~~~~~~~~~l~~~l~---~~~~LlVlDdv~~~~~~~~~~l~~~l--~~~~~s~ilv--Ttr~ 300 (849)
.++..|.+++....+ +....+....+...+. +...+||||+++......-+.|...+ +...+++|+| .|..
T Consensus 832 sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNd 911 (1164)
T PTZ00112 832 AAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCc
Confidence 999999999955443 2234455555555542 23469999999762211112232222 2223555543 3332
Q ss_pred hhhh----hhcccc-ccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHhhhhhcCC
Q 003086 301 GKVS----QKMGVK-KARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVGGMMLYKP 375 (849)
Q Consensus 301 ~~v~----~~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l~~~~ 375 (849)
.+.. ..+... ....+...|++.++..+++..++.... ..-.+..++-+|+.++...|-.=.||.++-.+...+.
T Consensus 912 lDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~-gVLdDdAIELIArkVAq~SGDARKALDILRrAgEike 990 (1164)
T PTZ00112 912 MDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCK-EIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKR 990 (1164)
T ss_pred hhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCC-CCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcC
Confidence 2211 111110 112467799999999999999985421 1112222333344444444444556555544332211
Q ss_pred C---ChHHHHHHHHhhhhhhccCCchHHHHHHHhhhCCChhhHHHHHHhccCCC---CccccHHHHHHHh--Hhc--C-C
Q 003086 376 P---TYNEWRRTADNFRDELAENDDSVMASLQLSYDELPPYLKSCFLSFSVYPE---DCVIRKEQLVYWW--IGE--G-F 444 (849)
Q Consensus 376 ~---~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~s~fp~---~~~i~~~~li~~w--ia~--g-~ 444 (849)
. +.++-..+.+... ...+.-....||.|.|..+..+...-+ ...++..++.... +++ | .
T Consensus 991 gskVT~eHVrkAleeiE----------~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~ 1060 (1164)
T PTZ00112 991 GQKIVPRDITEATNQLF----------DSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKY 1060 (1164)
T ss_pred CCccCHHHHHHHHHHHH----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhh
Confidence 1 1223222222211 112334456889887766554432211 1234444443222 333 1 1
Q ss_pred CcCCCCCCHHHHHHHHHHhhhhccceEEec
Q 003086 445 VPQRNGRSSIEAGEDCFSGLTNRCLVEVVD 474 (849)
Q Consensus 445 i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~ 474 (849)
+. .. ...+ ....|+.+|...|+|-..+
T Consensus 1061 iG-v~-plTq-RV~d~L~eL~~LGIIl~ep 1087 (1164)
T PTZ00112 1061 IG-MC-SNNE-LFKIMLDKLVKMGILLIRP 1087 (1164)
T ss_pred cC-CC-CcHH-HHHHHHHHHHhcCeEEecC
Confidence 11 11 1122 5677888888888887655
No 34
>PF05729 NACHT: NACHT domain
Probab=99.00 E-value=1.7e-09 Score=104.21 Aligned_cols=142 Identities=20% Similarity=0.233 Sum_probs=88.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhcc----cCceEEEEeCCccCHH---HHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFNDREIENW----FERRMWVSVSQTFTEE---QIMRSMLRNLGDASAGDDRGELLRKINQ 257 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~s~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~l~~ 257 (849)
+++.|+|.+|+||||+++.++..-..... +...+|++.+...... .+...|......... .... .+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~---~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA--PIEE---LLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh--hhHH---HHHH
Confidence 57899999999999999999875322222 4456677776544332 343344333332211 1111 2222
Q ss_pred H-hcCccEEEEEcCCCccCH--H-----HHH-HHHhcCCC--CCCceEEEEecchhhhh---hccccccccccCCCCChh
Q 003086 258 Y-LLGKRYLIVMDDVWGEDL--A-----WWR-RIYEGLPK--GKGSSIIITTRNGKVSQ---KMGVKKARMHFPKFLSED 323 (849)
Q Consensus 258 ~-l~~~~~LlVlDdv~~~~~--~-----~~~-~l~~~l~~--~~~s~ilvTtr~~~v~~---~~~~~~~~~~~l~~L~~~ 323 (849)
. -..++++||||++++... . .+. .+...++. .++.+++||+|+..... ..... ..+++.+|+++
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~--~~~~l~~~~~~ 153 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQA--QILELEPFSEE 153 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCC--cEEEECCCCHH
Confidence 2 257899999999976221 1 122 23344554 33899999999866622 22222 47899999999
Q ss_pred hHHHHHHHHh
Q 003086 324 DSWLLFRKIA 333 (849)
Q Consensus 324 e~~~lf~~~~ 333 (849)
+..+++.+..
T Consensus 154 ~~~~~~~~~f 163 (166)
T PF05729_consen 154 DIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 35
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.99 E-value=3.1e-11 Score=122.60 Aligned_cols=252 Identities=16% Similarity=0.116 Sum_probs=140.7
Q ss_pred ceEEecCCccccccccccc-cccCCCCccceEeccCCCCCcc-cCccccCCCCCcEEeeccccCCccCCh-hhhcccCCc
Q 003086 560 LRVLDISRSIFELPLKGLL-SQTGSLQHLSYLCLSNTHPLIH-LPPSLKKLKNLQILDVSYCQNLKMLPS-YVQSFIQLR 636 (849)
Q Consensus 560 Lr~L~L~~~~~~~~~~~~p-~~~~~l~~Lr~L~L~~~~~~~~-lp~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~l~~L~ 636 (849)
-..++|..|.|. .+| .+|+.+++||.|||++| .|+. -|..|..|.+|.+|-+.+++.++.+|. .|++|..|+
T Consensus 69 tveirLdqN~I~----~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 69 TVEIRLDQNQIS----SIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred ceEEEeccCCcc----cCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 456778888886 444 56888888888888888 5554 466788888888877777666777775 567888888
Q ss_pred EeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCe---
Q 003086 637 ALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQF--- 713 (849)
Q Consensus 637 ~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~--- 713 (849)
-|.+.-|++.......+..|++|..|.++.+.... ..-..+..+..++.+.+..|.+ ....+++.|..
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~----i~~~tf~~l~~i~tlhlA~np~-----icdCnL~wla~~~a 214 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQS----ICKGTFQGLAAIKTLHLAQNPF-----ICDCNLPWLADDLA 214 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccchhhhh----hccccccchhccchHhhhcCcc-----ccccccchhhhHHh
Confidence 88888777765555667788888878776664211 1112456666777776665531 01112222111
Q ss_pred --------------EEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCC-CcCCCCCCCCCceEEEeeCCccccc
Q 003086 714 --------------LSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSP-VWLNPASLPMLRYLSVCSGNLSKMH 778 (849)
Q Consensus 714 --------------L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~L~~n~l~~~~ 778 (849)
..+.+.++.....-.....+... ...+....+.....| ..| ..||+|++|+|++|+|+.+.
T Consensus 215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl--~s~~~~~d~~d~~cP~~cf--~~L~~L~~lnlsnN~i~~i~ 290 (498)
T KOG4237|consen 215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESL--PSRLSSEDFPDSICPAKCF--KKLPNLRKLNLSNNKITRIE 290 (498)
T ss_pred hchhhcccceecchHHHHHHHhcccchhhhhhhHHhH--HHhhccccCcCCcChHHHH--hhcccceEeccCCCccchhh
Confidence 11111111100000000000000 001111222222223 223 78999999999999999887
Q ss_pred cccccCcccccccceeecccccccccccccccccccccceeeecccccCcccCcCCcccccceeec
Q 003086 779 DSFWGENNTVWKIEALLFESLSDLGIEWTRLQGVMPSLHIVNASWCPELDSFPIEDVGFRGGVWIK 844 (849)
Q Consensus 779 ~~~~~~~~fp~~L~~L~l~~l~~L~l~~~~~~~~~p~L~~L~i~~c~~L~~l~l~~n~l~~~~~~~ 844 (849)
...|..-+ +++.|.|...+ |+ ..+.-.+.+...|+.|.|.+|+|+-..|..
T Consensus 291 ~~aFe~~a---~l~eL~L~~N~-l~-----------~v~~~~f~~ls~L~tL~L~~N~it~~~~~a 341 (498)
T KOG4237|consen 291 DGAFEGAA---ELQELYLTRNK-LE-----------FVSSGMFQGLSGLKTLSLYDNQITTVAPGA 341 (498)
T ss_pred hhhhcchh---hhhhhhcCcch-HH-----------HHHHHhhhccccceeeeecCCeeEEEeccc
Confidence 76554421 55555444311 22 111113344556666777777777666543
No 36
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.89 E-value=8.3e-09 Score=106.37 Aligned_cols=177 Identities=20% Similarity=0.237 Sum_probs=108.3
Q ss_pred CCCCCccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHH
Q 003086 157 VYDHTLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSML 236 (849)
Q Consensus 157 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 236 (849)
.+...+++|-+..+.++++ .+ .+....+||++|+||||||+.+.. .....| ..++-..+-.+=++.
T Consensus 26 ~vGQ~HLlg~~~~lrr~v~---~~--~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdlr~-- 91 (436)
T COG2256 26 VVGQEHLLGEGKPLRRAVE---AG--HLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDLRE-- 91 (436)
T ss_pred hcChHhhhCCCchHHHHHh---cC--CCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHHHH--
Confidence 3445566776666555543 33 467788999999999999999987 333333 333322211111111
Q ss_pred HHhcCCCCCCCHHHHHHHH-HHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCCCCceEEE--Eecchh--hhhhccccc
Q 003086 237 RNLGDASAGDDRGELLRKI-NQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGKGSSIII--TTRNGK--VSQKMGVKK 311 (849)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~l-~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~s~ilv--Ttr~~~--v~~~~~~~~ 311 (849)
..+.- +....+++.+|++|.|+..+..+.+.+...+.+ |.-|+| ||-+.. +....-...
T Consensus 92 --------------i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~--G~iilIGATTENPsF~ln~ALlSR~ 155 (436)
T COG2256 92 --------------IIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVEN--GTIILIGATTENPSFELNPALLSRA 155 (436)
T ss_pred --------------HHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcC--CeEEEEeccCCCCCeeecHHHhhhh
Confidence 22222 122358999999999999888888777666544 444444 565533 222222222
Q ss_pred cccccCCCCChhhHHHHHHHHhhccCCCCC-CCC-chhHHHHHHHHhcCCchhHH
Q 003086 312 ARMHFPKFLSEDDSWLLFRKIAFAATEGEC-QHP-SLEGVGKEIVEKCKGLPLAI 364 (849)
Q Consensus 312 ~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~-~~~-~~~~~~~~i~~~c~G~PLai 364 (849)
.++++++|+.++..+++.+.+.....+-. ... ..++....+++.++|---++
T Consensus 156 -~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 156 -RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred -heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 79999999999999999995533322111 112 23446677888888876543
No 37
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=5.7e-07 Score=96.38 Aligned_cols=296 Identities=17% Similarity=0.159 Sum_probs=172.9
Q ss_pred CCCccccccccHHHHHHHHhcc--CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccC-c-eEEEEeCCccCHHHHHHH
Q 003086 159 DHTLVVGLEGDTRKIKDWLFEA--EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFE-R-RMWVSVSQTFTEEQIMRS 234 (849)
Q Consensus 159 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~-~~wv~~s~~~~~~~~~~~ 234 (849)
.+..+.+|+++++++...|... +..+.-+.|+|.+|+|||+.++.+.+. +..... . +++|++....++.+++..
T Consensus 15 iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i~~~ 92 (366)
T COG1474 15 IPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQVLSK 92 (366)
T ss_pred CcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHHHHH
Confidence 3445999999999999887653 223344899999999999999999984 433322 2 789999999999999999
Q ss_pred HHHHhcC-CCCCCCHHHHHHHHHHHhc--CccEEEEEcCCCccCHHHHHHHHhcCCCCC--CceE--EEEecchhhhhhc
Q 003086 235 MLRNLGD-ASAGDDRGELLRKINQYLL--GKRYLIVMDDVWGEDLAWWRRIYEGLPKGK--GSSI--IITTRNGKVSQKM 307 (849)
Q Consensus 235 i~~~l~~-~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~--~s~i--lvTtr~~~v~~~~ 307 (849)
|+++++. +..+....+..+.+.+.+. ++.+++|||+++.-....-+.+...+.... .++| |..+-+..+...+
T Consensus 93 i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 93 ILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred HHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHh
Confidence 9999963 3336788888888888884 578999999997621111133333333222 4544 3344333322222
Q ss_pred cc-----cccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCC-chhHHHHH--hhhhhcCCC---
Q 003086 308 GV-----KKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKG-LPLAIKAV--GGMMLYKPP--- 376 (849)
Q Consensus 308 ~~-----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-~PLai~~~--~~~l~~~~~--- 376 (849)
.. -....+...|.+.+|...++..++-..-.+....+..-+....++..-+| -=.|+..+ |+.++....
T Consensus 173 d~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~ 252 (366)
T COG1474 173 DPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRK 252 (366)
T ss_pred hhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCCC
Confidence 21 11145778999999999999999854433222333333333344444443 33444443 233332111
Q ss_pred -ChHHHHHHHHhhhhhhccCCchHHHHHHHhhhCCChhhHHHHHHhccCCCCccccHHHHH--HHhHhcCCCcCCCCCCH
Q 003086 377 -TYNEWRRTADNFRDELAENDDSVMASLQLSYDELPPYLKSCFLSFSVYPEDCVIRKEQLV--YWWIGEGFVPQRNGRSS 453 (849)
Q Consensus 377 -~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li--~~wia~g~i~~~~~~~~ 453 (849)
+.++-..+.... -...+.-....||.+.|-.+.....-- ..+....+- ..++.+.+- . .
T Consensus 253 v~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~ki~L~~i~~~~--~~~~~~~~y~~y~~~~~~~~-----~-~ 314 (366)
T COG1474 253 VSEDHVREAQEEI----------ERDVLEEVLKTLPLHQKIVLLAIVELT--VEISTGELYDVYESLCERLR-----T-S 314 (366)
T ss_pred cCHHHHHHHHHHh----------hHHHHHHHHHcCCHhHHHHHHHHHHhc--CCCChHHHHHHHHHHHhhhC-----c-h
Confidence 122222221111 122233447788888766544433321 223333322 223332221 1 2
Q ss_pred HHHHHHHHHhhhhccceEEec
Q 003086 454 IEAGEDCFSGLTNRCLVEVVD 474 (849)
Q Consensus 454 e~~~~~~~~~L~~~~ll~~~~ 474 (849)
+..-.+++++|...+++....
T Consensus 315 ~~~~~~ii~~L~~lgiv~~~~ 335 (366)
T COG1474 315 QRRFSDIISELEGLGIVSASL 335 (366)
T ss_pred HHHHHHHHHHHHhcCeEEeee
Confidence 344567788888888887554
No 38
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.85 E-value=1.2e-08 Score=98.45 Aligned_cols=179 Identities=21% Similarity=0.225 Sum_probs=104.1
Q ss_pred CccccccccHHHHHHHHhc---cCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFE---AEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLR 237 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 237 (849)
.+|+|-++-++.+.-++.. .++....+.+||++|+||||||+-+.+. ....| .+++.. ...
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~---~~~sg~-~i~---------- 87 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANE--LGVNF---KITSGP-AIE---------- 87 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHH--CT--E---EEEECC-C------------
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhc--cCCCe---Eeccch-hhh----------
Confidence 5799999888876555543 2345778999999999999999999883 44333 222221 100
Q ss_pred HhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCC-------C--C-----------ceEEEE
Q 003086 238 NLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKG-------K--G-----------SSIIIT 297 (849)
Q Consensus 238 ~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~-------~--~-----------s~ilvT 297 (849)
...++...+.. + +++-+|++|+++..+....+.+..++.++ . + +-|=-|
T Consensus 88 ---------k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligAT 156 (233)
T PF05496_consen 88 ---------KAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGAT 156 (233)
T ss_dssp ---------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEE
T ss_pred ---------hHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeee
Confidence 11122222222 2 34568889999987777777777765442 1 1 224567
Q ss_pred ecchhhhhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHhhhh
Q 003086 298 TRNGKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVGGMM 371 (849)
Q Consensus 298 tr~~~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l 371 (849)
||...+...+........++...+.+|-..+..+.+..- ..+-.++.+.+|+++|.|-|--+.-+-+.+
T Consensus 157 Tr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l-----~i~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 157 TRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARIL-----NIEIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp SSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCT-----T-EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred ccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHh-----CCCcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 887655554443322455799999999999999887432 233457889999999999997665554443
No 39
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.85 E-value=1e-07 Score=113.50 Aligned_cols=313 Identities=16% Similarity=0.121 Sum_probs=183.7
Q ss_pred ccccccccHHHHHHHHhcc-CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEe---CCcc---CHHHHHHH
Q 003086 162 LVVGLEGDTRKIKDWLFEA-EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSV---SQTF---TEEQIMRS 234 (849)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~---s~~~---~~~~~~~~ 234 (849)
+++||+.+++.|...+... .....++.+.|.+|||||+|+++|..- +.+.+...+--.+ .... ...+.+++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~--i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKP--ITQQRGYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHH--HhccceeeeHhhcccccCCCchHHHHHHHHH
Confidence 3789999999999988764 345679999999999999999999873 3333221111111 1111 12234444
Q ss_pred HHHHhcCCC-------------------C-------------C----------CCHHH-----HHHHHHHHh-cCccEEE
Q 003086 235 MLRNLGDAS-------------------A-------------G----------DDRGE-----LLRKINQYL-LGKRYLI 266 (849)
Q Consensus 235 i~~~l~~~~-------------------~-------------~----------~~~~~-----~~~~l~~~l-~~~~~Ll 266 (849)
++.++.... . + ..... ....+.... +.++.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 444441111 0 0 00011 112222233 4569999
Q ss_pred EEcCCCccCHHHHHHHHhcCCCCC-----CceE--EEEecchhhhhhccccccccccCCCCChhhHHHHHHHHhhccCCC
Q 003086 267 VMDDVWGEDLAWWRRIYEGLPKGK-----GSSI--IITTRNGKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEG 339 (849)
Q Consensus 267 VlDdv~~~~~~~~~~l~~~l~~~~-----~s~i--lvTtr~~~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~ 339 (849)
|+||+...|....+.+........ -..| +.|.+..--...........+.|.||+..+...+........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~--- 235 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT--- 235 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc---
Confidence 999997766666655544433221 1233 333333211111122223689999999999999999887321
Q ss_pred CCCCCchhHHHHHHHHhcCCchhHHHHHhhhhhcCCC-----ChHHHHHHHHhhhhhhccCCchHHHHHHHhhhCCChhh
Q 003086 340 ECQHPSLEGVGKEIVEKCKGLPLAIKAVGGMMLYKPP-----TYNEWRRTADNFRDELAENDDSVMASLQLSYDELPPYL 414 (849)
Q Consensus 340 ~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l~~~~~-----~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~ 414 (849)
.....+....|+++..|+|+.+..+-..+....- ....|..-..+...- ...+.+...+..-.+.||...
T Consensus 236 ---~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~--~~~~~vv~~l~~rl~kL~~~t 310 (849)
T COG3899 236 ---KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGIL--ATTDAVVEFLAARLQKLPGTT 310 (849)
T ss_pred ---ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCc--hhhHHHHHHHHHHHhcCCHHH
Confidence 3345778899999999999999999888876421 123343322221111 112335667899999999999
Q ss_pred HHHHHHhccCCCCccccHHHHHHHhHhcCCCcCCCCCCHHHHHHHHHHhhhhccceEEec--ccc-CCceeee-eecHHH
Q 003086 415 KSCFLSFSVYPEDCVIRKEQLVYWWIGEGFVPQRNGRSSIEAGEDCFSGLTNRCLVEVVD--KAY-NKMISTC-KIHDMV 490 (849)
Q Consensus 415 k~cfl~~s~fp~~~~i~~~~li~~wia~g~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~--~~~-~~~~~~~-~~Hdlv 490 (849)
+..+...|++... |+.+.|...|-. ....++....+.|....++-..+ +.. .....+| ..||+|
T Consensus 311 ~~Vl~~AA~iG~~--F~l~~La~l~~~----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~v 378 (849)
T COG3899 311 REVLKAAACIGNR--FDLDTLAALAED----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRV 378 (849)
T ss_pred HHHHHHHHHhCcc--CCHHHHHHHHhh----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHH
Confidence 9999999999755 556666655521 34555666555555555443221 111 1111111 479999
Q ss_pred HHHHHH
Q 003086 491 RDLVIR 496 (849)
Q Consensus 491 ~~~~~~ 496 (849)
++.|-.
T Consensus 379 qqaaY~ 384 (849)
T COG3899 379 QQAAYN 384 (849)
T ss_pred HHHHhc
Confidence 988854
No 40
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.83 E-value=2.5e-08 Score=110.31 Aligned_cols=178 Identities=18% Similarity=0.177 Sum_probs=108.7
Q ss_pred CccccccccHHH---HHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHH
Q 003086 161 TLVVGLEGDTRK---IKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLR 237 (849)
Q Consensus 161 ~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 237 (849)
.+++|.+..+.. +..++.... ...+.|+|++|+||||||+.+++. .... |+.++....-.+-++.++
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~--~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~~ir~ii- 81 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGR--LSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVKDLREVI- 81 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCC--CceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHHHHHHHH-
Confidence 357888776555 666665543 557888999999999999999873 2222 333332211111112222
Q ss_pred HhcCCCCCCCHHHHHHHHHHH-hcCccEEEEEcCCCccCHHHHHHHHhcCCCCCCceEEE--Eecchh--hhhhcccccc
Q 003086 238 NLGDASAGDDRGELLRKINQY-LLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGKGSSIII--TTRNGK--VSQKMGVKKA 312 (849)
Q Consensus 238 ~l~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~s~ilv--Ttr~~~--v~~~~~~~~~ 312 (849)
+..... ..+++.+|++|+++.......+.+...+.. +..++| ||.+.. +...+....
T Consensus 82 ---------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~--~~iilI~att~n~~~~l~~aL~SR~- 143 (413)
T PRK13342 82 ---------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED--GTITLIGATTENPSFEVNPALLSRA- 143 (413)
T ss_pred ---------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc--CcEEEEEeCCCChhhhccHHHhccc-
Confidence 121111 245788999999998767777777777654 344444 344322 222222222
Q ss_pred ccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHh
Q 003086 313 RMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVG 368 (849)
Q Consensus 313 ~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~ 368 (849)
..+.+.+++.++.+.++.+.+.....+ .....++..+.|++.|+|.|..+.-+.
T Consensus 144 ~~~~~~~ls~e~i~~lL~~~l~~~~~~--~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 144 QVFELKPLSEEDIEQLLKRALEDKERG--LVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred eeeEeCCCCHHHHHHHHHHHHHHhhcC--CCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 578899999999999999876332110 112335677889999999997765443
No 41
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.80 E-value=3.2e-10 Score=120.52 Aligned_cols=161 Identities=25% Similarity=0.249 Sum_probs=134.7
Q ss_pred hhhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChh
Q 003086 549 NLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSY 628 (849)
Q Consensus 549 ~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~ 628 (849)
.+|..+..|..|..|.|..|.+. .+|..+++|..|.||+|+.| .+..+|..++.|+ |+.|-++ |+.+..+|..
T Consensus 89 elp~~~~~f~~Le~liLy~n~~r----~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~s-NNkl~~lp~~ 161 (722)
T KOG0532|consen 89 ELPEEACAFVSLESLILYHNCIR----TIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVS-NNKLTSLPEE 161 (722)
T ss_pred cCchHHHHHHHHHHHHHHhccce----ecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEe-cCccccCCcc
Confidence 66777888888999999999886 78999999999999999999 8999999888876 8999999 6678889999
Q ss_pred hhcccCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCC
Q 003086 629 VQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNL 708 (849)
Q Consensus 629 i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~ 708 (849)
++.+..|.+|+.+.|.+. .+|..++.+.+|+.|.+..+. -...+.++..| .|..||+++|++..+ +..|.++
T Consensus 162 ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~-----l~~lp~El~~L-pLi~lDfScNkis~i-Pv~fr~m 233 (722)
T KOG0532|consen 162 IGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNH-----LEDLPEELCSL-PLIRLDFSCNKISYL-PVDFRKM 233 (722)
T ss_pred cccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhh-----hhhCCHHHhCC-ceeeeecccCceeec-chhhhhh
Confidence 999999999999999887 889999999999999865553 23356677744 577899999986644 4678999
Q ss_pred CCCCeEEEEeecCCCC
Q 003086 709 RELQFLSISCFDSHGS 724 (849)
Q Consensus 709 ~~L~~L~L~~~~~~~~ 724 (849)
.+|++|-|.+|.+.+.
T Consensus 234 ~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 234 RHLQVLQLENNPLQSP 249 (722)
T ss_pred hhheeeeeccCCCCCC
Confidence 9999999999977653
No 42
>PTZ00202 tuzin; Provisional
Probab=98.79 E-value=1e-06 Score=92.84 Aligned_cols=168 Identities=13% Similarity=0.155 Sum_probs=107.3
Q ss_pred CCCCCccccccccHHHHHHHHhccC-CCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHH
Q 003086 157 VYDHTLVVGLEGDTRKIKDWLFEAE-EGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSM 235 (849)
Q Consensus 157 ~~~~~~~vGr~~~~~~l~~~L~~~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 235 (849)
+.+...|+||+++...+...|.+.+ ...+++.|+|++|+|||||++.+..... ...++.-.. +..++++.+
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~------~~qL~vNpr--g~eElLr~L 329 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG------MPAVFVDVR--GTEDTLRSV 329 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC------ceEEEECCC--CHHHHHHHH
Confidence 3456789999999999999997643 2356999999999999999999986422 123322222 779999999
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHh-----c-CccEEEEEcCCCccC-HHHHHHHHhcCCCCCCceEEEEecchhhhhhcc
Q 003086 236 LRNLGDASAGDDRGELLRKINQYL-----L-GKRYLIVMDDVWGED-LAWWRRIYEGLPKGKGSSIIITTRNGKVSQKMG 308 (849)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~l~~~l-----~-~~~~LlVlDdv~~~~-~~~~~~l~~~l~~~~~s~ilvTtr~~~v~~~~~ 308 (849)
+.+|+.+.. ....++...|.+.+ . +++.+||+-==...+ ...+.+....-.+..-|.|++----+.+.....
T Consensus 330 L~ALGV~p~-~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~la~drr~ch~v~evpleslt~~~~ 408 (550)
T PTZ00202 330 VKALGVPNV-EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIANT 408 (550)
T ss_pred HHHcCCCCc-ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHHHccchhheeeeeehHhhcchhcc
Confidence 999997432 23344555554443 3 677777775322111 122333322222233788887765554433222
Q ss_pred c-cccccccCCCCChhhHHHHHHHHh
Q 003086 309 V-KKARMHFPKFLSEDDSWLLFRKIA 333 (849)
Q Consensus 309 ~-~~~~~~~l~~L~~~e~~~lf~~~~ 333 (849)
. ..-..|-+.+++.++|.++..+..
T Consensus 409 ~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 409 LLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred cCccceeEecCCCCHHHHHHHHhhcc
Confidence 1 111467789999999999988775
No 43
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.79 E-value=3e-07 Score=103.99 Aligned_cols=181 Identities=14% Similarity=0.076 Sum_probs=116.4
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhh-------------------cccCceEEEE
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIE-------------------NWFERRMWVS 221 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~~wv~ 221 (849)
.+++|.+..++.|..++..+. -...+.++|..|+||||+|+.+.+.-.-. +.|..++++.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEID 94 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMD 94 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEec
Confidence 468999999999999887653 24566799999999999999876631100 0111122222
Q ss_pred eCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH----hcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEE
Q 003086 222 VSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQY----LLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIII 296 (849)
Q Consensus 222 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilv 296 (849)
.+.. ...+++.+.+... ..++.-++|||+++..+...|+.++..+..-. +.++|+
T Consensus 95 Aas~--------------------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FIL 154 (830)
T PRK07003 95 AASN--------------------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFIL 154 (830)
T ss_pred cccc--------------------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEE
Confidence 2111 1222222222221 13455689999999877888998888887654 777777
Q ss_pred Eecc-hhhhhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchh-HHHHHh
Q 003086 297 TTRN-GKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPL-AIKAVG 368 (849)
Q Consensus 297 Ttr~-~~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PL-ai~~~~ 368 (849)
||.+ ..+...+...+ ..+.+++++.++..+.+.+.+.... .....+..+.|++.++|..- |+..+-
T Consensus 155 aTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~Eg-----I~id~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 155 ATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEER-----IAFEPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred EECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 7766 33433333333 6899999999999999988873321 22235677889999998764 544433
No 44
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.78 E-value=5.3e-09 Score=99.13 Aligned_cols=85 Identities=22% Similarity=0.314 Sum_probs=28.2
Q ss_pred hcCCCcceEEecCCccccccccccccccC-CCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhh-hc
Q 003086 554 FSECRYLRVLDISRSIFELPLKGLLSQTG-SLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYV-QS 631 (849)
Q Consensus 554 ~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~-~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i-~~ 631 (849)
+.+...++.|+|++|.|+ . .+.++ .+.+|+.|+|++| .+..++. +..+++|++|++++|. +..++..+ ..
T Consensus 15 ~~n~~~~~~L~L~~n~I~----~-Ie~L~~~l~~L~~L~Ls~N-~I~~l~~-l~~L~~L~~L~L~~N~-I~~i~~~l~~~ 86 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS----T-IENLGATLDKLEVLDLSNN-QITKLEG-LPGLPRLKTLDLSNNR-ISSISEGLDKN 86 (175)
T ss_dssp --------------------------S--TT-TT--EEE-TTS---S--TT-----TT--EEE--SS----S-CHHHHHH
T ss_pred cccccccccccccccccc----c-ccchhhhhcCCCEEECCCC-CCccccC-ccChhhhhhcccCCCC-CCccccchHHh
Confidence 445567899999999986 2 34566 5889999999999 8888864 8889999999999665 55565555 46
Q ss_pred ccCCcEeeccCCCCc
Q 003086 632 FIQLRALDVTHCGSL 646 (849)
Q Consensus 632 l~~L~~L~l~~~~~~ 646 (849)
+++|++|++++|.+.
T Consensus 87 lp~L~~L~L~~N~I~ 101 (175)
T PF14580_consen 87 LPNLQELYLSNNKIS 101 (175)
T ss_dssp -TT--EEE-TTS---
T ss_pred CCcCCEEECcCCcCC
Confidence 899999999998764
No 45
>PRK06893 DNA replication initiation factor; Validated
Probab=98.78 E-value=8.8e-08 Score=96.84 Aligned_cols=153 Identities=10% Similarity=0.164 Sum_probs=95.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCcc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKR 263 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 263 (849)
.+.+.|+|++|+|||+||+.+++. .......+.|+++... .....+ +.+.+. +.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~---~~~~~~--------------------~~~~~~-~~ 92 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKS---QYFSPA--------------------VLENLE-QQ 92 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHh---hhhhHH--------------------HHhhcc-cC
Confidence 457899999999999999999984 3333445677776421 001111 111111 23
Q ss_pred EEEEEcCCCccC-HHHHH-HHHhcCCC--CCCceEEEEecc----------hhhhhhccccccccccCCCCChhhHHHHH
Q 003086 264 YLIVMDDVWGED-LAWWR-RIYEGLPK--GKGSSIIITTRN----------GKVSQKMGVKKARMHFPKFLSEDDSWLLF 329 (849)
Q Consensus 264 ~LlVlDdv~~~~-~~~~~-~l~~~l~~--~~~s~ilvTtr~----------~~v~~~~~~~~~~~~~l~~L~~~e~~~lf 329 (849)
-+|||||+|... ...|+ .+...+.. ..|+.+||+|.+ ..+...+... ..++++++++++.++++
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g--~~~~l~~pd~e~~~~iL 170 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWG--EIYQLNDLTDEQKIIVL 170 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcC--CeeeCCCCCHHHHHHHH
Confidence 499999998732 33454 33333332 225566554443 2445544433 47899999999999999
Q ss_pred HHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHhh
Q 003086 330 RKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVGG 369 (849)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~ 369 (849)
++.++... ..--+++..-|++.+.|..-.+..+-.
T Consensus 171 ~~~a~~~~-----l~l~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 171 QRNAYQRG-----IELSDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHHHHcC-----CCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 99986432 223467788899999888776654443
No 46
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.78 E-value=3.4e-08 Score=90.81 Aligned_cols=116 Identities=17% Similarity=0.197 Sum_probs=85.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhh---cccCceEEEEeCCccCHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHh
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIE---NWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAG-DDRGELLRKINQYL 259 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~l 259 (849)
.+++.|+|.+|+|||++++.+.++.... ..-..++|+.+....+...+...|+..++..... .+..++.+.+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4689999999999999999998842110 0023467999988889999999999999988764 67888888888888
Q ss_pred cCcc-EEEEEcCCCcc-CHHHHHHHHhcCCCCCCceEEEEecc
Q 003086 260 LGKR-YLIVMDDVWGE-DLAWWRRIYEGLPKGKGSSIIITTRN 300 (849)
Q Consensus 260 ~~~~-~LlVlDdv~~~-~~~~~~~l~~~l~~~~~s~ilvTtr~ 300 (849)
...+ .+||+||++.- +...++.++.... ..+.+||+..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLN-ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHTC-SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHHh-CCCCeEEEEECh
Confidence 6554 59999999876 6667777766554 557888888765
No 47
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.73 E-value=1.3e-09 Score=109.75 Aligned_cols=231 Identities=19% Similarity=0.107 Sum_probs=139.8
Q ss_pred hhhhhcCCCcceEEecCCcccccccc-ccccccCCCCccceEeccCCCCC----cccCcc-------ccCCCCCcEEeec
Q 003086 550 LATKFSECRYLRVLDISRSIFELPLK-GLLSQTGSLQHLSYLCLSNTHPL----IHLPPS-------LKKLKNLQILDVS 617 (849)
Q Consensus 550 ~~~~~~~l~~Lr~L~L~~~~~~~~~~-~~p~~~~~l~~Lr~L~L~~~~~~----~~lp~~-------i~~L~~L~~L~L~ 617 (849)
.-.....+..++.|+|++|.+..... .+-+.+.+.+.|+.-++++- .. .++|+. +-.+++|++||||
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLS 100 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence 33455678889999999999864211 22344566778898888864 32 234443 3456789999999
Q ss_pred cccCCccCCh----hhhcccCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeee
Q 003086 618 YCQNLKMLPS----YVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQ 693 (849)
Q Consensus 618 ~~~~~~~lp~----~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 693 (849)
.|-+...-+. -+.++..|++|+|.+|.+...-...+++ .|..|. ......+-++|+.+.+.
T Consensus 101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~-------------~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 101 DNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA-------------VNKKAASKPKLRVFICG 165 (382)
T ss_pred ccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH-------------HHhccCCCcceEEEEee
Confidence 8875544443 3456788999998888753111111111 222222 01123445677777777
Q ss_pred eccCcccch----HhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCC-----CCCcCCCCCCCCC
Q 003086 694 LTCGDEIEE----DALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKT-----SPVWLNPASLPML 764 (849)
Q Consensus 694 ~~~~~~~~~----~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-----~p~~~~~~~l~~L 764 (849)
.|.+..... ..|...+.|+.+.+..|.+...........+..|++|+.|+++.++-.. +-..+ ..+|+|
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL--~s~~~L 243 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL--SSWPHL 243 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh--cccchh
Confidence 776544332 4566667788888887766554443345566777888888887654221 00011 345789
Q ss_pred ceEEEeeCCccccccccccC---cccccccceeecccc
Q 003086 765 RYLSVCSGNLSKMHDSFWGE---NNTVWKIEALLFESL 799 (849)
Q Consensus 765 ~~L~L~~n~l~~~~~~~~~~---~~fp~~L~~L~l~~l 799 (849)
+.|+++.|.+.+-+...+.. .++| .|+.|.+.++
T Consensus 244 ~El~l~dcll~~~Ga~a~~~al~~~~p-~L~vl~l~gN 280 (382)
T KOG1909|consen 244 RELNLGDCLLENEGAIAFVDALKESAP-SLEVLELAGN 280 (382)
T ss_pred eeecccccccccccHHHHHHHHhccCC-CCceeccCcc
Confidence 99999988887665443322 1477 7777776654
No 48
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.71 E-value=1.1e-07 Score=96.54 Aligned_cols=167 Identities=13% Similarity=0.113 Sum_probs=100.3
Q ss_pred cccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCC
Q 003086 167 EGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGD 246 (849)
Q Consensus 167 ~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~ 246 (849)
+..++.+.+++... ....|.|+|++|+|||+||+.+++. ........++++++.-.+ ..
T Consensus 23 ~~~~~~l~~~~~~~--~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~------~~----------- 81 (226)
T TIGR03420 23 AELLAALRQLAAGK--GDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQ------AD----------- 81 (226)
T ss_pred HHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHH------hH-----------
Confidence 33566666665432 3568899999999999999999874 222334456666553211 00
Q ss_pred CHHHHHHHHHHHhcCccEEEEEcCCCccCH--HHHHHHHhcCCC--CCCceEEEEecchh---------hhhhccccccc
Q 003086 247 DRGELLRKINQYLLGKRYLIVMDDVWGEDL--AWWRRIYEGLPK--GKGSSIIITTRNGK---------VSQKMGVKKAR 313 (849)
Q Consensus 247 ~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~l~~~l~~--~~~s~ilvTtr~~~---------v~~~~~~~~~~ 313 (849)
..+...+.+ .-+|||||++..+. ...+.+...+.. ..+..+|+||+... +...+... .
T Consensus 82 ------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~--~ 152 (226)
T TIGR03420 82 ------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWG--L 152 (226)
T ss_pred ------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcC--e
Confidence 011111222 23899999986322 223444444432 22458889887532 11122111 4
Q ss_pred cccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHh
Q 003086 314 MHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVG 368 (849)
Q Consensus 314 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~ 368 (849)
.+++.+++.++...++.+.+.... .+--++..+.|++.+.|.|..+..+.
T Consensus 153 ~i~l~~l~~~e~~~~l~~~~~~~~-----~~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 153 VFQLPPLSDEEKIAALQSRAARRG-----LQLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred eEecCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 789999999999999987653211 22335667888888999998766554
No 49
>PRK04195 replication factor C large subunit; Provisional
Probab=98.69 E-value=1.9e-06 Score=97.34 Aligned_cols=247 Identities=19% Similarity=0.182 Sum_probs=141.1
Q ss_pred CccccccccHHHHHHHHhcc--CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEA--EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRN 238 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 238 (849)
.+++|.++.++++.+|+..- +...+.+.|+|++|+||||+|+.++++. .|+ ++-++.+...+.. .+..++..
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el----~~~-~ielnasd~r~~~-~i~~~i~~ 87 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY----GWE-VIELNASDQRTAD-VIERVAGE 87 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEcccccccHH-HHHHHHHH
Confidence 46999999999999998753 2236789999999999999999998842 122 3334444332222 22333322
Q ss_pred hcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccC----HHHHHHHHhcCCCCCCceEEEEecc-hhhhh-hcccccc
Q 003086 239 LGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGED----LAWWRRIYEGLPKGKGSSIIITTRN-GKVSQ-KMGVKKA 312 (849)
Q Consensus 239 l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----~~~~~~l~~~l~~~~~s~ilvTtr~-~~v~~-~~~~~~~ 312 (849)
...... ....++.+||+|+++... ...+..+...+... +..||+|+.. ..... ......
T Consensus 88 ~~~~~s-------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~-~~~iIli~n~~~~~~~k~Lrsr~- 152 (482)
T PRK04195 88 AATSGS-------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIKKA-KQPIILTANDPYDPSLRELRNAC- 152 (482)
T ss_pred hhccCc-------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHHcC-CCCEEEeccCccccchhhHhccc-
Confidence 211100 011367899999997632 24456666666533 3445555543 22211 121112
Q ss_pred ccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHhhhhhcCCC--ChHHHHHHHHhhhh
Q 003086 313 RMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVGGMMLYKPP--TYNEWRRTADNFRD 390 (849)
Q Consensus 313 ~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l~~~~~--~~~~w~~~~~~~~~ 390 (849)
..+++.+++.++....+.+.+..... ....++...|++.++|-.-.+......+..... +.+.-..+..
T Consensus 153 ~~I~f~~~~~~~i~~~L~~i~~~egi-----~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~---- 223 (482)
T PRK04195 153 LMIEFKRLSTRSIVPVLKRICRKEGI-----ECDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR---- 223 (482)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc----
Confidence 57889999999999999888743321 123567889999999988765544433433221 2222222211
Q ss_pred hhccCCchHHHHHHHhhh-CCChhhHHHHHHhccCCCCccccHHHHHHHhHhcCCCcC
Q 003086 391 ELAENDDSVMASLQLSYD-ELPPYLKSCFLSFSVYPEDCVIRKEQLVYWWIGEGFVPQ 447 (849)
Q Consensus 391 ~~~~~~~~~~~~l~~sy~-~L~~~~k~cfl~~s~fp~~~~i~~~~li~~wia~g~i~~ 447 (849)
......++.++..-+. .-+......+..+ .++. ..+-.|+.+.+...
T Consensus 224 --~d~~~~if~~l~~i~~~k~~~~a~~~~~~~-------~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 224 --RDREESIFDALDAVFKARNADQALEASYDV-------DEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred --CCCCCCHHHHHHHHHCCCCHHHHHHHHHcc-------cCCH-HHHHHHHHhccccc
Confidence 1124556666665554 2222333322221 1232 45778999998754
No 50
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=1.4e-06 Score=97.71 Aligned_cols=193 Identities=13% Similarity=0.048 Sum_probs=116.1
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhc
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLG 240 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 240 (849)
.+++|.+...+.|..++..+. -...+.++|+.|+||||+|+.+.+.-. |..|+... .+..-...+.|...-.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~Ln------C~~~~~~~-pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLN------CETGVTST-PCEVCATCKAVNEGRF 86 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhC------CCcCCCCC-CCccCHHHHHHhcCCC
Confidence 468999999999999988653 246778999999999999998866311 10011000 0000001111110000
Q ss_pred CC------CCCCCHHHHHHHHHHH----hcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEecc-hhhhhhcc
Q 003086 241 DA------SAGDDRGELLRKINQY----LLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITTRN-GKVSQKMG 308 (849)
Q Consensus 241 ~~------~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTtr~-~~v~~~~~ 308 (849)
.. ......+++.+.+... ..++.-++|+|+++..+...++.+...+...+ +.++|++|.+ ..+.....
T Consensus 87 pDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIl 166 (702)
T PRK14960 87 IDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVI 166 (702)
T ss_pred CceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHH
Confidence 00 0011222222222111 23566799999999877788888888887655 6677776654 33322222
Q ss_pred ccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHH
Q 003086 309 VKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAV 367 (849)
Q Consensus 309 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 367 (849)
... ..+++++++.++..+.+.+.+.... ...-.+....|++.++|.+-.+..+
T Consensus 167 SRC-q~feFkpLs~eEI~k~L~~Il~kEg-----I~id~eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 167 SRC-LQFTLRPLAVDEITKHLGAILEKEQ-----IAADQDAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred Hhh-heeeccCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 222 6889999999999999988874322 2233566788999999988654433
No 51
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=7e-07 Score=96.96 Aligned_cols=191 Identities=17% Similarity=0.119 Sum_probs=113.1
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhc
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLG 240 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 240 (849)
.+++|.+..++.+...+..+. -...+.++|+.|+||||+|+.+.+.-.-..... ..++..-....++.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHhcCCC
Confidence 468999999999988887643 345678999999999999999976311000000 000000000111111000
Q ss_pred CC------CCCCCHHHHHHHHHHHh-----cCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEecc-hhhhhhc
Q 003086 241 DA------SAGDDRGELLRKINQYL-----LGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITTRN-GKVSQKM 307 (849)
Q Consensus 241 ~~------~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTtr~-~~v~~~~ 307 (849)
.. ......++.. .+.+.+ .+++-++|+|+++..+...++.+...+...+ ..++|++|.+ ..+....
T Consensus 88 ~d~~~~~~~~~~~v~~ir-~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI 166 (363)
T PRK14961 88 LDLIEIDAASRTKVEEMR-EILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTI 166 (363)
T ss_pred CceEEecccccCCHHHHH-HHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHH
Confidence 00 0001122221 121211 2455699999998876777888888887655 6666666654 3343333
Q ss_pred cccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHH
Q 003086 308 GVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKA 366 (849)
Q Consensus 308 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~ 366 (849)
.... ..+++.+++.++..+.+.+.+...+ ....++.+..|++.++|.|-.+..
T Consensus 167 ~SRc-~~~~~~~l~~~el~~~L~~~~~~~g-----~~i~~~al~~ia~~s~G~~R~al~ 219 (363)
T PRK14961 167 LSRC-LQFKLKIISEEKIFNFLKYILIKES-----IDTDEYALKLIAYHAHGSMRDALN 219 (363)
T ss_pred Hhhc-eEEeCCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 3222 6889999999999999988764322 112356678899999998865433
No 52
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.66 E-value=7.3e-07 Score=95.06 Aligned_cols=180 Identities=13% Similarity=0.176 Sum_probs=118.3
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcC----hhhhcccCceEEEEe-CCccCHHHHHHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFND----REIENWFERRMWVSV-SQTFTEEQIMRSM 235 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~----~~~~~~f~~~~wv~~-s~~~~~~~~~~~i 235 (849)
.+++|-+.-++.+...+..+. -.....++|+.|+||||+|+.++.. .....|+|...|... +....+++ .+++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~ 81 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNI 81 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHH
Confidence 357898888888888887643 3457789999999999999988762 122345565555442 22222222 2222
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEecchh-hhhhccccccc
Q 003086 236 LRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITTRNGK-VSQKMGVKKAR 313 (849)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTtr~~~-v~~~~~~~~~~ 313 (849)
.+.+... -..+++-++|+|+++..+...++.+...+.+.+ ++.+|++|.+.+ +.......+ .
T Consensus 82 ~~~~~~~---------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc-~ 145 (313)
T PRK05564 82 IEEVNKK---------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRC-Q 145 (313)
T ss_pred HHHHhcC---------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhc-e
Confidence 2222111 012456688888887766889999999998876 888888886543 223233333 6
Q ss_pred cccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHH
Q 003086 314 MHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAV 367 (849)
Q Consensus 314 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 367 (849)
.+++.+++.++....+.+... ....+.++.++..++|.|..+...
T Consensus 146 ~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 146 IYKLNRLSKEEIEKFISYKYN---------DIKEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred eeeCCCcCHHHHHHHHHHHhc---------CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 889999999999888876541 011344678899999999766543
No 53
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.65 E-value=3.9e-07 Score=98.95 Aligned_cols=197 Identities=14% Similarity=0.079 Sum_probs=112.8
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccC-ceEEEEeCCccCH--HHHHH--HH
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFE-RRMWVSVSQTFTE--EQIMR--SM 235 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~~--~~~~~--~i 235 (849)
.+++|++..++.+.+++..+. .+.+.|+|++|+||||+|+.+.+.-. ...+. ..+.++++...+. ..+.. ..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPN--LPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVEDPRF 91 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhcCcch
Confidence 468899999999988887653 44678999999999999999877321 11122 2344444321100 00000 00
Q ss_pred HHHhcCC--CCCCCHHHHHHHHHHH---h--cCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEecc-hhhhhh
Q 003086 236 LRNLGDA--SAGDDRGELLRKINQY---L--LGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITTRN-GKVSQK 306 (849)
Q Consensus 236 ~~~l~~~--~~~~~~~~~~~~l~~~---l--~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTtr~-~~v~~~ 306 (849)
...++.. ......+.....+... . .+.+-+||+||+...+...+..+...+.... .+++|+||.. ..+...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~ 171 (337)
T PRK12402 92 AHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPP 171 (337)
T ss_pred hhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchh
Confidence 0000000 0000112222222221 1 1344589999998755555666666664433 5778777754 222222
Q ss_pred ccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHH
Q 003086 307 MGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKA 366 (849)
Q Consensus 307 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~ 366 (849)
..... ..+++.+++.++...++.+.+.... ..--.+..+.+++.++|.+-.+..
T Consensus 172 L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 172 IRSRC-LPLFFRAPTDDELVDVLESIAEAEG-----VDYDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hcCCc-eEEEecCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 22222 5788899999999999988764322 123366788899999988765544
No 54
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.65 E-value=5.7e-07 Score=100.40 Aligned_cols=180 Identities=14% Similarity=0.086 Sum_probs=117.3
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhh------------------------cccCc
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIE------------------------NWFER 216 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~------------------------~~f~~ 216 (849)
.++||-+.-++.|.+++..+. -...+.++|..|+||||+|+.+.+.-.-. +.|..
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpD 94 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVD 94 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCc
Confidence 468999999999999887653 23567899999999999999986621100 00111
Q ss_pred eEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH----hcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-C
Q 003086 217 RMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQY----LLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-G 291 (849)
Q Consensus 217 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~ 291 (849)
++++..+.. ...+++.+.+... ..++.-++|||+++..+...++.++..+..-+ +
T Consensus 95 viEIdAas~--------------------~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~ 154 (700)
T PRK12323 95 YIEMDAASN--------------------RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEH 154 (700)
T ss_pred ceEeccccc--------------------CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCC
Confidence 122211111 1233333322221 14566799999999877888999988887644 5
Q ss_pred ce-EEEEecchhhhhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHH
Q 003086 292 SS-IIITTRNGKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAV 367 (849)
Q Consensus 292 s~-ilvTtr~~~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 367 (849)
.+ |++||....+...+...+ ..+.++.++.++..+.+.+.+.... .....+..+.|++.++|.|..+..+
T Consensus 155 v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Eg-----i~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 155 VKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEG-----IAHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred ceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 55 455555555554444433 7899999999999999988764221 1122455688999999999755444
No 55
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.62 E-value=3.6e-09 Score=112.76 Aligned_cols=195 Identities=25% Similarity=0.280 Sum_probs=149.6
Q ss_pred CCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcccCCc
Q 003086 557 CRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLR 636 (849)
Q Consensus 557 l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 636 (849)
+..-...||+.|.+. .+|..++.+..|..|.|+.| .+..+|..+++|..|.+|||+.|. +..+|..++.|+ |+
T Consensus 74 ltdt~~aDlsrNR~~----elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lk 146 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS----ELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LK 146 (722)
T ss_pred ccchhhhhccccccc----cCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ce
Confidence 344556789999987 89999999999999999999 899999999999999999999665 678898888765 89
Q ss_pred EeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCeEEE
Q 003086 637 ALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSI 716 (849)
Q Consensus 637 ~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L 716 (849)
.|-+++|++. .+|..|+.+..|..|+.+.|. ....+..++.+.+|+.|.+..|++...++ .+..+ .|..|++
T Consensus 147 vli~sNNkl~-~lp~~ig~~~tl~~ld~s~ne-----i~slpsql~~l~slr~l~vrRn~l~~lp~-El~~L-pLi~lDf 218 (722)
T KOG0532|consen 147 VLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNE-----IQSLPSQLGYLTSLRDLNVRRNHLEDLPE-ELCSL-PLIRLDF 218 (722)
T ss_pred eEEEecCccc-cCCcccccchhHHHhhhhhhh-----hhhchHHhhhHHHHHHHHHhhhhhhhCCH-HHhCC-ceeeeec
Confidence 9999999887 899999988889888866663 34456789999999999999998766654 34433 5888999
Q ss_pred EeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCCCcCCC-CCCCCCceEEEee
Q 003086 717 SCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSPVWLNP-ASLPMLRYLSVCS 771 (849)
Q Consensus 717 ~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~-~~l~~L~~L~L~~ 771 (849)
++|.+... .-.+..+.+|+.|.|.++....+|..+.. +...=.++|+..-
T Consensus 219 ScNkis~i-----Pv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA 269 (722)
T KOG0532|consen 219 SCNKISYL-----PVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQA 269 (722)
T ss_pred ccCceeec-----chhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchh
Confidence 99976542 22455677888888888777665543321 3333344444443
No 56
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=5.7e-07 Score=103.84 Aligned_cols=183 Identities=16% Similarity=0.119 Sum_probs=116.1
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcc-------------------cCceEEEE
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENW-------------------FERRMWVS 221 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~~~~wv~ 221 (849)
.+++|-+.-++.|..++..+. -...+.++|+.|+||||+|+.+++.-.-... |.-++++.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEid 94 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVD 94 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEec
Confidence 468999999999988887653 2345689999999999999999874111100 11112221
Q ss_pred eCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH-HhcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEe-
Q 003086 222 VSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQ-YLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITT- 298 (849)
Q Consensus 222 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTt- 298 (849)
.+....+. ...++.+.+.. -..+++-++|||+++......++.++..+-.-+ ..++|++|
T Consensus 95 Aas~~kVD-----------------dIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTT 157 (944)
T PRK14949 95 AASRTKVD-----------------DTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATT 157 (944)
T ss_pred cccccCHH-----------------HHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECC
Confidence 11001111 11122222211 124677899999999888888999988887655 56655554
Q ss_pred cchhhhhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHH
Q 003086 299 RNGKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAV 367 (849)
Q Consensus 299 r~~~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 367 (849)
....+...+-..+ ..+++++++.++..+++.+.+-.. ....-.+....|++.++|.|-.+..+
T Consensus 158 e~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~E-----gI~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 158 DPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQE-----QLPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred CchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 4444443333323 689999999999999998876332 12223567788999999999654444
No 57
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1.1e-08 Score=105.82 Aligned_cols=93 Identities=22% Similarity=0.166 Sum_probs=44.4
Q ss_pred hhccccccceeeeeccCcccchHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCC--CCCcCC-
Q 003086 681 LKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKT--SPVWLN- 757 (849)
Q Consensus 681 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~--~p~~~~- 757 (849)
+..+|+|..|++..|....+.......++.|+.|+|+.|.+.... .......+|.|..|.++.+.... .|+.-+
T Consensus 218 ~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~---~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~ 294 (505)
T KOG3207|consen 218 LLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD---QGYKVGTLPGLNQLNLSSTGIASIAEPDVESL 294 (505)
T ss_pred HHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc---cccccccccchhhhhccccCcchhcCCCccch
Confidence 445667777777766311122223334556677777766543321 22233345555555554332211 121100
Q ss_pred --CCCCCCCceEEEeeCCccc
Q 003086 758 --PASLPMLRYLSVCSGNLSK 776 (849)
Q Consensus 758 --~~~l~~L~~L~L~~n~l~~ 776 (849)
...+|+|++|++..|++.+
T Consensus 295 ~kt~~f~kL~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 295 DKTHTFPKLEYLNISENNIRD 315 (505)
T ss_pred hhhcccccceeeecccCcccc
Confidence 0346666666666666643
No 58
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=8.8e-09 Score=106.61 Aligned_cols=164 Identities=23% Similarity=0.152 Sum_probs=81.5
Q ss_pred hhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCcc--ccCCCCCcEEeeccccCC-ccCChhh
Q 003086 553 KFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPS--LKKLKNLQILDVSYCQNL-KMLPSYV 629 (849)
Q Consensus 553 ~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~--i~~L~~L~~L~L~~~~~~-~~lp~~i 629 (849)
....|++++.|||+.|-+.. +..+......|++|+.|+|+.| .+...-++ -..+++|..|.|+.|... ..+....
T Consensus 141 ~~k~~~~v~~LdLS~NL~~n-w~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~ 218 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHN-WFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWIL 218 (505)
T ss_pred hhhhCCcceeecchhhhHHh-HHHHHHHHHhcccchhcccccc-cccCCccccchhhhhhhheEEeccCCCCHHHHHHHH
Confidence 44566777777777766541 2223334456677777777766 32221111 134566666666666533 1222333
Q ss_pred hcccCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccch------H
Q 003086 630 QSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEE------D 703 (849)
Q Consensus 630 ~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~------~ 703 (849)
..+++|..|++..|...........-+..|++|++.++... ........+.++.|+.|.++.+.+..+.. +
T Consensus 219 ~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li---~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~ 295 (505)
T KOG3207|consen 219 LTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI---DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLD 295 (505)
T ss_pred HhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc---ccccccccccccchhhhhccccCcchhcCCCccchh
Confidence 45666666666666322122222334455666665444211 11122345566666666666655433221 1
Q ss_pred hhcCCCCCCeEEEEeecC
Q 003086 704 ALVNLRELQFLSISCFDS 721 (849)
Q Consensus 704 ~l~~~~~L~~L~L~~~~~ 721 (849)
....+++|++|++..|.+
T Consensus 296 kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 296 KTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhcccccceeeecccCcc
Confidence 234456666666666544
No 59
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.57 E-value=1.3e-07 Score=92.94 Aligned_cols=46 Identities=22% Similarity=0.362 Sum_probs=32.0
Q ss_pred ccccccccHHHHHHHHhc-cCCCeEEEEEEcCCCCcHHHHHHHHhcC
Q 003086 162 LVVGLEGDTRKIKDWLFE-AEEGILAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~-~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
.|+||+++++++.+.|.. .....+.+.|+|.+|+|||+|++.++..
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 489999999999999952 2345689999999999999999999884
No 60
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.57 E-value=1.4e-06 Score=97.04 Aligned_cols=192 Identities=16% Similarity=0.107 Sum_probs=115.5
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCc-eEEEEeCCccCHHHHHHHHHHH-
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFER-RMWVSVSQTFTEEQIMRSMLRN- 238 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~~~- 238 (849)
.+++|-+.-++.+...+..+. -...+.++|+.|+||||+|+.+++.-.-...... ..+..+... .....|...
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHHhcCC
Confidence 368899998888887776542 2457889999999999999999763111000000 000001100 001111100
Q ss_pred ------hcCCCCCCCHHHHHHHHHHH----hcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEE-EEecchhhhhh
Q 003086 239 ------LGDASAGDDRGELLRKINQY----LLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSII-ITTRNGKVSQK 306 (849)
Q Consensus 239 ------l~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~il-vTtr~~~v~~~ 306 (849)
+... .....+++.+.+... ..+++-++|+|+++..+...|+.+...+...+ .+.+| .||+...+...
T Consensus 96 h~Dv~eidaa-s~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~t 174 (507)
T PRK06645 96 HPDIIEIDAA-SKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPAT 174 (507)
T ss_pred CCcEEEeecc-CCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHH
Confidence 0000 011233333322221 24567799999999877888999998887655 55655 45555555554
Q ss_pred ccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHH
Q 003086 307 MGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAI 364 (849)
Q Consensus 307 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 364 (849)
+.... ..+++.+++.++....+.+.+...+ .....+....|++.++|.+--+
T Consensus 175 I~SRc-~~~ef~~ls~~el~~~L~~i~~~eg-----i~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 175 IISRC-QRYDLRRLSFEEIFKLLEYITKQEN-----LKTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHhcc-eEEEccCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHH
Confidence 44333 5789999999999999999884322 1223466778999999988544
No 61
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.56 E-value=3.1e-07 Score=92.90 Aligned_cols=162 Identities=14% Similarity=0.124 Sum_probs=97.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCc
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGK 262 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 262 (849)
....+.+||++|+||||||+.+.+..+-. ...||..|-...-..-.+.|.++-.. ...+.++
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~----SyrfvelSAt~a~t~dvR~ife~aq~--------------~~~l~kr 222 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKH----SYRFVELSATNAKTNDVRDIFEQAQN--------------EKSLTKR 222 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCC----ceEEEEEeccccchHHHHHHHHHHHH--------------HHhhhcc
Confidence 47788999999999999999998853322 25677776544333333444333211 1134678
Q ss_pred cEEEEEcCCCccCHHHHHHHHhcCCCCCCceEEEEecchhh--hhhccccccccccCCCCChhhHHHHHHHHhh--cc-C
Q 003086 263 RYLIVMDDVWGEDLAWWRRIYEGLPKGKGSSIIITTRNGKV--SQKMGVKKARMHFPKFLSEDDSWLLFRKIAF--AA-T 337 (849)
Q Consensus 263 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~s~ilvTtr~~~v--~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~--~~-~ 337 (849)
|.+|++|.|...+..+.+.+.....++.-.-|=-||.+... ....-..+ .++.|++|..++...++.+... .+ +
T Consensus 223 kTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dse 301 (554)
T KOG2028|consen 223 KTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSE 301 (554)
T ss_pred eeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhcccc
Confidence 99999999988666666655444333222233346666432 22222222 6889999999999999988542 11 1
Q ss_pred CCC-CCCC----chhHHHHHHHHhcCCchhH
Q 003086 338 EGE-CQHP----SLEGVGKEIVEKCKGLPLA 363 (849)
Q Consensus 338 ~~~-~~~~----~~~~~~~~i~~~c~G~PLa 363 (849)
... ..+. ....+.+-++..|.|-.-+
T Consensus 302 r~~~~l~n~s~~ve~siidyla~lsdGDaR~ 332 (554)
T KOG2028|consen 302 RPTDPLPNSSMFVEDSIIDYLAYLSDGDARA 332 (554)
T ss_pred ccCCCCCCcchhhhHHHHHHHHHhcCchHHH
Confidence 110 1111 2244666777788887643
No 62
>PF13173 AAA_14: AAA domain
Probab=98.52 E-value=2.7e-07 Score=84.14 Aligned_cols=121 Identities=18% Similarity=0.118 Sum_probs=77.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCcc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKR 263 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 263 (849)
.+++.|.|+.|+|||||++.++.+.. ....++++++.+........ .+ ..+.+.+...+++
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~---------------~~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD---------------PD-LLEYFLELIKPGK 62 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh---------------hh-hHHHHHHhhccCC
Confidence 46899999999999999999987422 33557788776443211000 00 2233333333477
Q ss_pred EEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEecchhhhhhc----cccccccccCCCCChhhH
Q 003086 264 YLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITTRNGKVSQKM----GVKKARMHFPKFLSEDDS 325 (849)
Q Consensus 264 ~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTtr~~~v~~~~----~~~~~~~~~l~~L~~~e~ 325 (849)
.+|+||++.. ...|......+-+.. ..+|++|+.+......- -......++|.||+-.|.
T Consensus 63 ~~i~iDEiq~--~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQY--LPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhh--hccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 8999999988 555666666555544 78999999976554221 111225678899987763
No 63
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.52 E-value=1.9e-06 Score=92.71 Aligned_cols=182 Identities=13% Similarity=0.091 Sum_probs=109.9
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEe--CCccCHHHHHHHHHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSV--SQTFTEEQIMRSMLRN 238 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~--s~~~~~~~~~~~i~~~ 238 (849)
.+++|+++.++.+..++..+. .+.+.|+|.+|+||||+|+.+.+.. ....+. ..++.+ +...... ...+.+..
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~-~~~i~~~~~~~~~~~-~~~~~i~~ 91 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALAREL-YGEDWR-ENFLELNASDERGID-VIRNKIKE 91 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHH-cCCccc-cceEEeccccccchH-HHHHHHHH
Confidence 458899999999999887653 4457999999999999999997741 111121 122322 2221111 11111111
Q ss_pred hcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEecc-hhhhhhcccccccccc
Q 003086 239 LGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITTRN-GKVSQKMGVKKARMHF 316 (849)
Q Consensus 239 l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTtr~-~~v~~~~~~~~~~~~~ 316 (849)
+....+ .....+-++++|+++......+..+...+.... .+.+|+++.. ..+........ ..++
T Consensus 92 ~~~~~~-------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~-~~~~ 157 (319)
T PRK00440 92 FARTAP-------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC-AVFR 157 (319)
T ss_pred HHhcCC-------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh-heee
Confidence 110000 001235699999997755556667777766544 6677777643 22222221112 4688
Q ss_pred CCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHH
Q 003086 317 PKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKA 366 (849)
Q Consensus 317 l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~ 366 (849)
+.+++.++....+.+.+.... ..-.++....+++.++|.+--+..
T Consensus 158 ~~~l~~~ei~~~l~~~~~~~~-----~~i~~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 158 FSPLKKEAVAERLRYIAENEG-----IEITDDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred eCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 999999999999988874322 122356788899999998876433
No 64
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=2.2e-06 Score=96.04 Aligned_cols=195 Identities=14% Similarity=0.061 Sum_probs=116.2
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhc
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLG 240 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 240 (849)
.+++|-+..++.|..++..+. -...+.++|++|+||||+|+.+++.-.-.+.+....|.|.+.. .+.......+..+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~~h~dv~el~ 91 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRGAHPDVLEID 91 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcCCCCceEEec
Confidence 368999988888888887653 2356699999999999999999774221122222233322110 00000000000000
Q ss_pred CCCCCCCHHHHHHHHHHHh-----cCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEe-cchhhhhhccccccc
Q 003086 241 DASAGDDRGELLRKINQYL-----LGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITT-RNGKVSQKMGVKKAR 313 (849)
Q Consensus 241 ~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTt-r~~~v~~~~~~~~~~ 313 (849)
.. .....+.+. .+.+.+ .+++-++|+|+++..+...++.+...+.... ...+|++| ....+...+.... .
T Consensus 92 ~~-~~~~vd~iR-~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc-~ 168 (504)
T PRK14963 92 AA-SNNSVEDVR-DLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRT-Q 168 (504)
T ss_pred cc-ccCCHHHHH-HHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcce-E
Confidence 00 011122221 122222 3466799999998877778888888887654 55555554 4444444343333 6
Q ss_pred cccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHH
Q 003086 314 MHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIK 365 (849)
Q Consensus 314 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~ 365 (849)
.+++.+++.++....+.+.+...+. ..-++....|++.++|.+--+.
T Consensus 169 ~~~f~~ls~~el~~~L~~i~~~egi-----~i~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 169 HFRFRRLTEEEIAGKLRRLLEAEGR-----EAEPEALQLVARLADGAMRDAE 215 (504)
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCCHHHHH
Confidence 8899999999999999998743321 1235677889999999996543
No 65
>PLN03025 replication factor C subunit; Provisional
Probab=98.51 E-value=1.9e-06 Score=92.06 Aligned_cols=183 Identities=11% Similarity=0.107 Sum_probs=109.4
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCc-eEEEEeCCccCHHHHHHHHHHHh
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFER-RMWVSVSQTFTEEQIMRSMLRNL 239 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~~~l 239 (849)
.+++|.++.++.|.+++..+. .+.+.++|++|+||||+|+.+++.- ....|.. ++-++.+...... ..+.++..+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~vr~~i~~~ 88 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGN--MPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-VVRNKIKMF 88 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-HHHHHHHHH
Confidence 368898888888887776543 4457899999999999999987731 1112221 1222222222221 122222111
Q ss_pred cCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEecc-hhhhhhccccccccccC
Q 003086 240 GDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITTRN-GKVSQKMGVKKARMHFP 317 (849)
Q Consensus 240 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTtr~-~~v~~~~~~~~~~~~~l 317 (849)
...... .-.++.-++|||+++..+......+...+..-+ .+++++++.. ..+........ ..+++
T Consensus 89 ~~~~~~------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc-~~i~f 155 (319)
T PLN03025 89 AQKKVT------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC-AIVRF 155 (319)
T ss_pred Hhcccc------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh-hcccC
Confidence 100000 002456799999998866666777776665433 5677776644 22222222222 57899
Q ss_pred CCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHH
Q 003086 318 KFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIK 365 (849)
Q Consensus 318 ~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~ 365 (849)
+++++++....+...+-..+ ..-.++....|++.++|-.-.+.
T Consensus 156 ~~l~~~~l~~~L~~i~~~eg-----i~i~~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 156 SRLSDQEILGRLMKVVEAEK-----VPYVPEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred CCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHH
Confidence 99999999999988874322 12235677889999998775443
No 66
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=1.1e-06 Score=95.70 Aligned_cols=196 Identities=14% Similarity=0.011 Sum_probs=116.8
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhc
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLG 240 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 240 (849)
.+++|-+..+..|..++..+. -...+.++|+.|+||||+|+.+++.-.-. +... ...+....+-..+...+...+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce-~~~~--~~pCg~C~sC~~i~~g~~~dvi 93 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCE-NPIG--NEPCNECTSCLEITKGISSDVL 93 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcc-cccC--ccccCCCcHHHHHHccCCccce
Confidence 468999998888888887754 23467899999999999999997731110 0000 0011111111111111100000
Q ss_pred C-CC-CCCCHHH---HHHHHHHH-hcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEE-EEecchhhhhhcccccc
Q 003086 241 D-AS-AGDDRGE---LLRKINQY-LLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSII-ITTRNGKVSQKMGVKKA 312 (849)
Q Consensus 241 ~-~~-~~~~~~~---~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~il-vTtr~~~v~~~~~~~~~ 312 (849)
. .. .....+. +.+.+... ..++.-++|+|+++..+...++.++..+...+ ...+| .||....+...+....
T Consensus 94 EIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRC- 172 (484)
T PRK14956 94 EIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRC- 172 (484)
T ss_pred eechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhh-
Confidence 0 00 0111222 22222211 24566799999999888888999988886644 45544 5555555544444433
Q ss_pred ccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHH
Q 003086 313 RMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKA 366 (849)
Q Consensus 313 ~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~ 366 (849)
..+.+.+++.++..+.+.+.+...+ ..-.++....|++.++|.+--+..
T Consensus 173 q~~~f~~ls~~~i~~~L~~i~~~Eg-----i~~e~eAL~~Ia~~S~Gd~RdAL~ 221 (484)
T PRK14956 173 QDFIFKKVPLSVLQDYSEKLCKIEN-----VQYDQEGLFWIAKKGDGSVRDMLS 221 (484)
T ss_pred heeeecCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCChHHHHHH
Confidence 5789999999999999988874321 122356778899999999964433
No 67
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.51 E-value=8.6e-07 Score=102.23 Aligned_cols=202 Identities=19% Similarity=0.159 Sum_probs=118.4
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhccc---CceEEEEeCCc---cCHHHHHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWF---ERRMWVSVSQT---FTEEQIMRS 234 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~s~~---~~~~~~~~~ 234 (849)
++++|++..++.+.+.+..+. ...+.|+|++|+||||||+.+++.......+ ....|+.+... .+...+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~--~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~ 231 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPF--PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNP 231 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCC--CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHH
Confidence 358899999999888775433 4579999999999999999998753332222 12345555321 122222111
Q ss_pred H---------------HHHhcCCC------------------CCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHH
Q 003086 235 M---------------LRNLGDAS------------------AGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRR 281 (849)
Q Consensus 235 i---------------~~~l~~~~------------------~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~ 281 (849)
+ +...+... ...=....+..+.+.+.++++.++-|+.|..+...|+.
T Consensus 232 llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ 311 (615)
T TIGR02903 232 LLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKY 311 (615)
T ss_pred hcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchh
Confidence 1 11111110 00112235667778888888888887777766667888
Q ss_pred HHhcCCCCCCc-eEEE--Eecchh-hhhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhc
Q 003086 282 IYEGLPKGKGS-SIII--TTRNGK-VSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKC 357 (849)
Q Consensus 282 l~~~l~~~~~s-~ilv--Ttr~~~-v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c 357 (849)
+...+..+... .|++ ||++.. +...+.... ..+.+.+++.+|.++++.+.+.... ..-.+++.+.|.+.+
T Consensus 312 ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~-~~i~~~pls~edi~~Il~~~a~~~~-----v~ls~eal~~L~~ys 385 (615)
T TIGR02903 312 IKKLFEEGAPADFVLIGATTRDPEEINPALRSRC-AEVFFEPLTPEDIALIVLNAAEKIN-----VHLAAGVEELIARYT 385 (615)
T ss_pred hhhhcccCccceEEEEEeccccccccCHHHHhce-eEEEeCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHCC
Confidence 87777765533 3444 555432 222222221 4677899999999999999874221 111244555555555
Q ss_pred CCchhHHHHHhhh
Q 003086 358 KGLPLAIKAVGGM 370 (849)
Q Consensus 358 ~G~PLai~~~~~~ 370 (849)
..-+-|+..++.+
T Consensus 386 ~~gRraln~L~~~ 398 (615)
T TIGR02903 386 IEGRKAVNILADV 398 (615)
T ss_pred CcHHHHHHHHHHH
Confidence 4445555555433
No 68
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.50 E-value=1.1e-07 Score=105.53 Aligned_cols=177 Identities=27% Similarity=0.281 Sum_probs=127.8
Q ss_pred hcCCCcceEEecCCccccccccccccccCCCC-ccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcc
Q 003086 554 FSECRYLRVLDISRSIFELPLKGLLSQTGSLQ-HLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSF 632 (849)
Q Consensus 554 ~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~-~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l 632 (849)
...+..++.|++.+|.+. .+|...+.+. +|++|++++| .+..+|..++.+++|+.|++++|+ +..+|...+.+
T Consensus 112 ~~~~~~l~~L~l~~n~i~----~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~ 185 (394)
T COG4886 112 LLELTNLTSLDLDNNNIT----DIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNL 185 (394)
T ss_pred hhcccceeEEecCCcccc----cCccccccchhhccccccccc-chhhhhhhhhccccccccccCCch-hhhhhhhhhhh
Confidence 445578888999988886 6777777775 8999999998 888888778899999999998654 66777766688
Q ss_pred cCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCC
Q 003086 633 IQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQ 712 (849)
Q Consensus 633 ~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 712 (849)
++|+.|++++|.+. .+|..++.+..|++|.+..+. ....+..+.++.++..|.+.+|.+... ...+..+++|+
T Consensus 186 ~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~-----~~~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~ 258 (394)
T COG4886 186 SNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNS-----IIELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLE 258 (394)
T ss_pred hhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCc-----ceecchhhhhcccccccccCCceeeec-cchhccccccc
Confidence 88999999988877 777766677778888765552 122344577777777777777654322 35567777788
Q ss_pred eEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCC
Q 003086 713 FLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPG 749 (849)
Q Consensus 713 ~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~ 749 (849)
.|++++|.+... ..+.+..+++.|+++++..
T Consensus 259 ~L~~s~n~i~~i------~~~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 259 TLDLSNNQISSI------SSLGSLTNLRELDLSGNSL 289 (394)
T ss_pred eecccccccccc------ccccccCccCEEeccCccc
Confidence 888887755432 2255566777777776543
No 69
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.50 E-value=8.5e-07 Score=83.26 Aligned_cols=124 Identities=16% Similarity=0.079 Sum_probs=72.1
Q ss_pred ccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCC
Q 003086 164 VGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDAS 243 (849)
Q Consensus 164 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 243 (849)
+|++..++.+...+.... .+.+.|+|.+|+|||++|+.+++.. ...-..++++.+............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~--~~~v~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~----- 71 (151)
T cd00009 1 VGQEEAIEALREALELPP--PKNLLLYGPPGTGKTTLARAIANEL--FRPGAPFLYLNASDLLEGLVVAELFGHF----- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHh--hcCCCCeEEEehhhhhhhhHHHHHhhhh-----
Confidence 377888888888887642 4678999999999999999998842 2222346677665443322211111100
Q ss_pred CCCCHHHHHHHHHHHhcCccEEEEEcCCCccC---HHHHHHHHhcCCC----CCCceEEEEecchh
Q 003086 244 AGDDRGELLRKINQYLLGKRYLIVMDDVWGED---LAWWRRIYEGLPK----GKGSSIIITTRNGK 302 (849)
Q Consensus 244 ~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---~~~~~~l~~~l~~----~~~s~ilvTtr~~~ 302 (849)
............++.++|+||++... ...+..+...+.. ..+..||+||....
T Consensus 72 ------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 00111112234567899999998532 2222232333322 24778888887543
No 70
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.49 E-value=3.2e-06 Score=90.34 Aligned_cols=196 Identities=15% Similarity=0.133 Sum_probs=120.2
Q ss_pred CCccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhh--cccCceEEEEeCCccCHHHHHHHHHH
Q 003086 160 HTLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIE--NWFERRMWVSVSQTFTEEQIMRSMLR 237 (849)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~f~~~~wv~~s~~~~~~~~~~~i~~ 237 (849)
...++|.++..+.+...+..+. ....+.|+|+.|+||||+|+.+.+.---. ..+... .....+......+.|..
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~ 97 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQ 97 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHc
Confidence 4568999999999999887753 34578899999999999999886631000 001111 00111111112333322
Q ss_pred H-------hcCCC--------CCCCHHHHHHHHHHHh-----cCccEEEEEcCCCccCHHHHHHHHhcCCCCC-Cce-EE
Q 003086 238 N-------LGDAS--------AGDDRGELLRKINQYL-----LGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSS-II 295 (849)
Q Consensus 238 ~-------l~~~~--------~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~-il 295 (849)
. +..+. ..-..+++. .+.+++ .+++-++|+|+++..+....+.+...+...+ +.. |+
T Consensus 98 ~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiL 176 (351)
T PRK09112 98 GAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFIL 176 (351)
T ss_pred CCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEE
Confidence 2 11100 011234433 344444 3567799999999877888888888876644 444 55
Q ss_pred EEecchhhhhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHh
Q 003086 296 ITTRNGKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVG 368 (849)
Q Consensus 296 vTtr~~~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~ 368 (849)
+|++...+........ ..+.+.+++.++..+++.+.... .. ..++....|++.++|.|..+..+.
T Consensus 177 it~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~------~~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 177 ISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSS------QG-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhcc------cC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6655555544444433 68999999999999999884311 11 224556789999999998765443
No 71
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=2.6e-06 Score=95.57 Aligned_cols=184 Identities=18% Similarity=0.116 Sum_probs=116.0
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChh----h---------------hcccCceEEEE
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDRE----I---------------ENWFERRMWVS 221 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~----~---------------~~~f~~~~wv~ 221 (849)
.+++|-+..++.+...+..+. -...+.++|+.|+||||+|+.+++.-. . ...|...+++.
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieid 94 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEID 94 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEee
Confidence 468899999999998887643 345678999999999999999976210 0 01122233332
Q ss_pred eCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH-hcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEE-EEe
Q 003086 222 VSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQY-LLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSII-ITT 298 (849)
Q Consensus 222 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~il-vTt 298 (849)
......++ +..++.+.+... ..+++-++|+|+++..+...++.++..+.+.+ .+.+| +||
T Consensus 95 aas~~gvd-----------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Tt 157 (546)
T PRK14957 95 AASRTGVE-----------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATT 157 (546)
T ss_pred cccccCHH-----------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEEC
Confidence 22111111 112222222211 24567799999998877888899999888765 56555 455
Q ss_pred cchhhhhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchh-HHHHHh
Q 003086 299 RNGKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPL-AIKAVG 368 (849)
Q Consensus 299 r~~~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PL-ai~~~~ 368 (849)
....+...+.... ..+++++++.++....+.+.+...+ ...-+.....|++.++|.+- |+..+-
T Consensus 158 d~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~eg-----i~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 158 DYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKEN-----INSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred ChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4444443333323 6899999999999988887663321 12235566789999999774 444443
No 72
>PLN03150 hypothetical protein; Provisional
Probab=98.48 E-value=1.8e-07 Score=108.86 Aligned_cols=102 Identities=22% Similarity=0.315 Sum_probs=86.8
Q ss_pred cceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcccCCcEe
Q 003086 559 YLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRAL 638 (849)
Q Consensus 559 ~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 638 (849)
.++.|+|++|.+.+ .+|..++.+++|++|+|++|...+.+|..++.+++|++|+|++|.....+|..++++++|++|
T Consensus 419 ~v~~L~L~~n~L~g---~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQGLRG---FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEEECCCCCccc---cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 48889999999875 678899999999999999995556899899999999999999888888899999999999999
Q ss_pred eccCCCCccccCcccccc-ccccccC
Q 003086 639 DVTHCGSLQYLPKGFGKL-LNLEVLL 663 (849)
Q Consensus 639 ~l~~~~~~~~~p~~i~~l-~~L~~L~ 663 (849)
++++|.+.+.+|..++.+ .++..++
T Consensus 496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~ 521 (623)
T PLN03150 496 NLNGNSLSGRVPAALGGRLLHRASFN 521 (623)
T ss_pred ECcCCcccccCChHHhhccccCceEE
Confidence 999999988888877653 3444444
No 73
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=4.3e-06 Score=92.90 Aligned_cols=183 Identities=19% Similarity=0.130 Sum_probs=111.5
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhc-------------------ccCceEEEE
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIEN-------------------WFERRMWVS 221 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~wv~ 221 (849)
.+++|.+...+.+...+..+. -...+.++|++|+||||+|+.+.+.-.-.. .+..+..+.
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~ 92 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELD 92 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEe
Confidence 468999888777777776543 235678999999999999999976311000 000112222
Q ss_pred eCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH-----hcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEE
Q 003086 222 VSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQY-----LLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSII 295 (849)
Q Consensus 222 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~il 295 (849)
.+.... .+++. .+.+. ..+++-++|+|+++..+....+.+...+...+ ...+|
T Consensus 93 aa~~~g--------------------id~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~I 151 (472)
T PRK14962 93 AASNRG--------------------IDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFV 151 (472)
T ss_pred CcccCC--------------------HHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEE
Confidence 211111 22221 12221 23466799999998755666777887776654 34444
Q ss_pred E-EecchhhhhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCC-chhHHHHHhhhh
Q 003086 296 I-TTRNGKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKG-LPLAIKAVGGMM 371 (849)
Q Consensus 296 v-Ttr~~~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-~PLai~~~~~~l 371 (849)
+ ||....+........ ..+++.+++.++....+.+.+.... ..-.++....|++.++| .+.|+..+-.+.
T Consensus 152 lattn~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~eg-----i~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 152 LATTNLEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEAEG-----IEIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EEeCChHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4 443345544444333 6889999999999999988874321 12235667788988865 466666665543
No 74
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.46 E-value=1.6e-06 Score=100.82 Aligned_cols=175 Identities=19% Similarity=0.224 Sum_probs=102.5
Q ss_pred CccccccccHH---HHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHH
Q 003086 161 TLVVGLEGDTR---KIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLR 237 (849)
Q Consensus 161 ~~~vGr~~~~~---~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 237 (849)
.+|+|.+..+. .+.+.+..+ ....+.|+|++|+||||||+.+++. ...+|. .++.+. ..+.
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~i~-------- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AGVK-------- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hhhH--------
Confidence 46889887764 455555543 3567789999999999999999873 333331 111110 0000
Q ss_pred HhcCCCCCCCHHHHHHHHHHHh--cCccEEEEEcCCCccCHHHHHHHHhcCCCCCCceEEEE--ecch--hhhhhccccc
Q 003086 238 NLGDASAGDDRGELLRKINQYL--LGKRYLIVMDDVWGEDLAWWRRIYEGLPKGKGSSIIIT--TRNG--KVSQKMGVKK 311 (849)
Q Consensus 238 ~l~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~s~ilvT--tr~~--~v~~~~~~~~ 311 (849)
+..+......+.+ .+++.+|||||++..+...++.+...+.. +..++++ |.+. .+........
T Consensus 92 ---------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~--g~IiLI~aTTenp~~~l~~aL~SR~ 160 (725)
T PRK13341 92 ---------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVEN--GTITLIGATTENPYFEVNKALVSRS 160 (725)
T ss_pred ---------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcC--ceEEEEEecCCChHhhhhhHhhccc
Confidence 1111122222222 24678999999987667777777765543 4444443 3332 2222222222
Q ss_pred cccccCCCCChhhHHHHHHHHhhccCC--CCCCCCchhHHHHHHHHhcCCchhH
Q 003086 312 ARMHFPKFLSEDDSWLLFRKIAFAATE--GECQHPSLEGVGKEIVEKCKGLPLA 363 (849)
Q Consensus 312 ~~~~~l~~L~~~e~~~lf~~~~~~~~~--~~~~~~~~~~~~~~i~~~c~G~PLa 363 (849)
..+.+++++.++...++.+.+-.... +.....-.++....|++.+.|.--.
T Consensus 161 -~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ 213 (725)
T PRK13341 161 -RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARS 213 (725)
T ss_pred -cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHH
Confidence 57899999999999999987642110 0011223356678888888887543
No 75
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.46 E-value=2.7e-06 Score=96.42 Aligned_cols=180 Identities=14% Similarity=0.101 Sum_probs=113.2
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhc-------------------ccCceEEEE
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIEN-------------------WFERRMWVS 221 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~wv~ 221 (849)
.+++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+.+.-.-.. .|..++.+.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEid 94 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEID 94 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEe
Confidence 468999999999999988653 245688999999999999998866311000 011111221
Q ss_pred eCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH----hcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEE
Q 003086 222 VSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQY----LLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIII 296 (849)
Q Consensus 222 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilv 296 (849)
.+.. ...+.+.+.+... ..+++-++|+|++...+...++.++..+..-+ ..++|+
T Consensus 95 aAs~--------------------~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fIL 154 (709)
T PRK08691 95 AASN--------------------TGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFIL 154 (709)
T ss_pred cccc--------------------CCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEE
Confidence 1111 1222222222111 23566799999998866777777888776544 566666
Q ss_pred Eecc-hhhhhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHH
Q 003086 297 TTRN-GKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAV 367 (849)
Q Consensus 297 Ttr~-~~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 367 (849)
+|.+ ..+...+.... ..+.+.+++.++....+.+.+-..+ .....+....|++.++|.+.-+..+
T Consensus 155 aTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEg-----i~id~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 155 ATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEK-----IAYEPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred EeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHHhCCCHHHHHHH
Confidence 6643 33332222222 5788899999999999988874322 1223567789999999998654443
No 76
>PF14516 AAA_35: AAA-like domain
Probab=98.45 E-value=3.6e-05 Score=82.34 Aligned_cols=204 Identities=9% Similarity=0.092 Sum_probs=124.2
Q ss_pred CCCccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCc-----cCHHHHHH
Q 003086 159 DHTLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQT-----FTEEQIMR 233 (849)
Q Consensus 159 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-----~~~~~~~~ 233 (849)
+.+.+|.|...-+++.+.+.+++ ..+.|.|+-.+|||+|...+.+. .+..=...+++++... .+.+.+++
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~G---~~~~I~apRq~GKTSll~~l~~~--l~~~~~~~v~id~~~~~~~~~~~~~~f~~ 83 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQPG---SYIRIKAPRQMGKTSLLLRLLER--LQQQGYRCVYIDLQQLGSAIFSDLEQFLR 83 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcCC---CEEEEECcccCCHHHHHHHHHHH--HHHCCCEEEEEEeecCCCcccCCHHHHHH
Confidence 34457788866677777777642 58899999999999999999874 3222234567877642 24565555
Q ss_pred HHHHHh----cCCCC--------CCCHHHHHHHHHHHh---cCccEEEEEcCCCcc-C-----HHHHHHHHhcCCCC---
Q 003086 234 SMLRNL----GDASA--------GDDRGELLRKINQYL---LGKRYLIVMDDVWGE-D-----LAWWRRIYEGLPKG--- 289 (849)
Q Consensus 234 ~i~~~l----~~~~~--------~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~-~-----~~~~~~l~~~l~~~--- 289 (849)
.++..+ +.... ..+.......+.+++ .+++.+|+||+++.. + .+.+..++......
T Consensus 84 ~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~ 163 (331)
T PF14516_consen 84 WFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNN 163 (331)
T ss_pred HHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccC
Confidence 555444 43321 113334444555543 368999999999751 1 13344444433221
Q ss_pred C--CceEEEEecchhhhhhccc--c---ccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchh
Q 003086 290 K--GSSIIITTRNGKVSQKMGV--K---KARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPL 362 (849)
Q Consensus 290 ~--~s~ilvTtr~~~v~~~~~~--~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PL 362 (849)
+ .+-.++...+.+....... + ....++|.+++.+|...|..++-.. .-....++|...+||+|.
T Consensus 164 ~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~---------~~~~~~~~l~~~tgGhP~ 234 (331)
T PF14516_consen 164 PIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE---------FSQEQLEQLMDWTGGHPY 234 (331)
T ss_pred cccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc---------CCHHHHHHHHHHHCCCHH
Confidence 1 1112222222111111111 0 0157889999999999999887422 112338899999999999
Q ss_pred HHHHHhhhhhcCCC
Q 003086 363 AIKAVGGMMLYKPP 376 (849)
Q Consensus 363 ai~~~~~~l~~~~~ 376 (849)
.+..++..+..+..
T Consensus 235 Lv~~~~~~l~~~~~ 248 (331)
T PF14516_consen 235 LVQKACYLLVEEQI 248 (331)
T ss_pred HHHHHHHHHHHccC
Confidence 99999999977544
No 77
>PRK08727 hypothetical protein; Validated
Probab=98.45 E-value=4.5e-06 Score=84.63 Aligned_cols=148 Identities=12% Similarity=0.054 Sum_probs=90.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCcc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKR 263 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 263 (849)
...+.|+|.+|+|||+|++.+++. .......+.|+++.+ ....+. +.+. .+ .+.
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~----------------~~~~-~l-~~~ 94 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR----------------DALE-AL-EGR 94 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH----------------HHHH-HH-hcC
Confidence 346999999999999999999884 333334566776432 111111 1111 11 223
Q ss_pred EEEEEcCCCccC-HHHHH-HHHhcCCC--CCCceEEEEecch---------hhhhhccccccccccCCCCChhhHHHHHH
Q 003086 264 YLIVMDDVWGED-LAWWR-RIYEGLPK--GKGSSIIITTRNG---------KVSQKMGVKKARMHFPKFLSEDDSWLLFR 330 (849)
Q Consensus 264 ~LlVlDdv~~~~-~~~~~-~l~~~l~~--~~~s~ilvTtr~~---------~v~~~~~~~~~~~~~l~~L~~~e~~~lf~ 330 (849)
-+||+||+.... ...|. .+...+.. ..+..||+|++.. ++...+... ..+++++++.++..+++.
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~--~~~~l~~~~~e~~~~iL~ 172 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQC--IRIGLPVLDDVARAAVLR 172 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcC--ceEEecCCCHHHHHHHHH
Confidence 599999997521 12232 23332222 2366799999852 222222122 478999999999999999
Q ss_pred HHhhccCCCCCCCCchhHHHHHHHHhcCCchhHH
Q 003086 331 KIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAI 364 (849)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 364 (849)
+++... ...--++....|++.++|-.-.+
T Consensus 173 ~~a~~~-----~l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 173 ERAQRR-----GLALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHc-----CCCCCHHHHHHHHHhCCCCHHHH
Confidence 987532 12334677788999998777655
No 78
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.44 E-value=5.4e-06 Score=81.37 Aligned_cols=91 Identities=15% Similarity=0.122 Sum_probs=66.6
Q ss_pred CccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEecc-hhhhhhccccccccccCCCCChhhHHHHHHHHhhccCC
Q 003086 261 GKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITTRN-GKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATE 338 (849)
Q Consensus 261 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTtr~-~~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~ 338 (849)
+.+-++|+||+...+...++.+...+...+ .+.+|++|++ ..+...+.... ..+++.+++.++..+.+.+.. .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~-~~~~~~~~~~~~~~~~l~~~g---i- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRC-QVLPFPPLSEEALLQWLIRQG---I- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhc-EEeeCCCCCHHHHHHHHHHcC---C-
Confidence 556799999998876777888888887655 6667766654 33333333323 689999999999999888761 1
Q ss_pred CCCCCCchhHHHHHHHHhcCCchhH
Q 003086 339 GECQHPSLEGVGKEIVEKCKGLPLA 363 (849)
Q Consensus 339 ~~~~~~~~~~~~~~i~~~c~G~PLa 363 (849)
.++.+..|++.++|.|..
T Consensus 170 -------~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 -------SEEAAELLLALAGGSPGA 187 (188)
T ss_pred -------CHHHHHHHHHHcCCCccc
Confidence 146688999999998853
No 79
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.44 E-value=6e-08 Score=95.35 Aligned_cols=130 Identities=18% Similarity=0.179 Sum_probs=86.3
Q ss_pred hhhccccccceeeeeccCcccchHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCCCcCCCC
Q 003086 680 ELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSPVWLNPA 759 (849)
Q Consensus 680 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~ 759 (849)
....-..|+.|++++|.++.+. .+..-.+.++.|++++|.+.. ..++..+++|..|+++++....+-.|- .
T Consensus 279 ~~dTWq~LtelDLS~N~I~~iD-ESvKL~Pkir~L~lS~N~i~~------v~nLa~L~~L~~LDLS~N~Ls~~~Gwh--~ 349 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQID-ESVKLAPKLRRLILSQNRIRT------VQNLAELPQLQLLDLSGNLLAECVGWH--L 349 (490)
T ss_pred ecchHhhhhhccccccchhhhh-hhhhhccceeEEeccccceee------ehhhhhcccceEeecccchhHhhhhhH--h
Confidence 3444566788888888765543 456667888899998886543 344666788888888888766666776 7
Q ss_pred CCCCCceEEEeeCCccccccccccCcccccccceeecccc--cccccccccccccccccceeeecccc
Q 003086 760 SLPMLRYLSVCSGNLSKMHDSFWGENNTVWKIEALLFESL--SDLGIEWTRLQGVMPSLHIVNASWCP 825 (849)
Q Consensus 760 ~l~~L~~L~L~~n~l~~~~~~~~~~~~fp~~L~~L~l~~l--~~L~l~~~~~~~~~p~L~~L~i~~c~ 825 (849)
.+-|.++|.|+.|.|.++... ...- +|..|++++. .+++ + ....|.+|+|+.+.+.++|
T Consensus 350 KLGNIKtL~La~N~iE~LSGL----~KLY-SLvnLDl~~N~Ie~ld-e-V~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 350 KLGNIKTLKLAQNKIETLSGL----RKLY-SLVNLDLSSNQIEELD-E-VNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhcCEeeeehhhhhHhhhhhh----Hhhh-hheeccccccchhhHH-H-hcccccccHHHHHhhcCCC
Confidence 788999999998877543211 1122 6666666542 2232 2 2334678888777777665
No 80
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.43 E-value=2.8e-06 Score=96.75 Aligned_cols=193 Identities=17% Similarity=0.083 Sum_probs=116.1
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHH--
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRN-- 238 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~-- 238 (849)
.+++|-+.-++.|...+..+. -...+.++|..|+||||+|+.+.+.-.-...+. ...+..-...+.|...
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIEQGRF 87 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHHcCCC
Confidence 468999999998888887653 234568999999999999999976311100000 0000000111111110
Q ss_pred -----hcCCCCCCCHHHHHHHHHH----HhcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceE-EEEecchhhhhhc
Q 003086 239 -----LGDASAGDDRGELLRKINQ----YLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSI-IITTRNGKVSQKM 307 (849)
Q Consensus 239 -----l~~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~i-lvTtr~~~v~~~~ 307 (849)
+.... ....+++.+.+.. -..+++-++|+|+++..+...++.++..+-.-+ ..++ ++||....+...+
T Consensus 88 ~D~ieidaas-~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI 166 (647)
T PRK07994 88 VDLIEIDAAS-RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 (647)
T ss_pred CCceeecccc-cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHH
Confidence 00000 0122222222211 124677799999999877888999988887655 5555 4455545554333
Q ss_pred cccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHh
Q 003086 308 GVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVG 368 (849)
Q Consensus 308 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~ 368 (849)
...+ ..+.+++++.++....+.+.+-... .....+....|++.++|.+-.+..+.
T Consensus 167 ~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~-----i~~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 167 LSRC-LQFHLKALDVEQIRQQLEHILQAEQ-----IPFEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred Hhhh-eEeeCCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3333 6899999999999999988763221 12224566789999999887554443
No 81
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=1.2e-05 Score=90.48 Aligned_cols=184 Identities=16% Similarity=0.074 Sum_probs=114.5
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhh-------------------cccCceEEEE
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIE-------------------NWFERRMWVS 221 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~~wv~ 221 (849)
.++||-+.-++.|..++..+. -...+.++|+.|+||||+|+.+.+.-.-. +.|.-++.+.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eid 94 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVD 94 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEc
Confidence 468999999999999997653 23467899999999999999886631100 1111122332
Q ss_pred eCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEe-c
Q 003086 222 VSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITT-R 299 (849)
Q Consensus 222 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTt-r 299 (849)
.+....++++ +++++.+... -..++.-++|+|+++..+...++.+...+..-+ .+++|++| .
T Consensus 95 aas~~~v~~i-R~l~~~~~~~---------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd 158 (509)
T PRK14958 95 AASRTKVEDT-RELLDNIPYA---------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTD 158 (509)
T ss_pred ccccCCHHHH-HHHHHHHhhc---------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 2222222221 1222211110 113566799999999877888888888887655 66666554 4
Q ss_pred chhhhhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHH
Q 003086 300 NGKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAV 367 (849)
Q Consensus 300 ~~~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 367 (849)
...+...+.... ..+++++++.++....+.+.+-..+ ....++....|++.++|.+.-+..+
T Consensus 159 ~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~eg-----i~~~~~al~~ia~~s~GslR~al~l 220 (509)
T PRK14958 159 HHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEEN-----VEFENAALDLLARAANGSVRDALSL 220 (509)
T ss_pred hHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 444433333222 5789999999998888877763322 1122456678999999988654443
No 82
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=1.1e-06 Score=94.44 Aligned_cols=195 Identities=11% Similarity=0.030 Sum_probs=114.7
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEE----EEeCCccCHHHHHHHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMW----VSVSQTFTEEQIMRSML 236 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~w----v~~s~~~~~~~~~~~i~ 236 (849)
.+++|.++.++.+.+.+..+. -...+.++|+.|+||+|+|..+.+.---......... .++. .+..-...+.|.
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~-~~~~c~~c~~i~ 96 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA-IDPDHPVARRIA 96 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc-CCCCChHHHHHH
Confidence 478999999999998888753 2456889999999999999877552100000000000 0000 000001111111
Q ss_pred HHhcCC---------C------CCCCHHHHHHHHHHHh-----cCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEE
Q 003086 237 RNLGDA---------S------AGDDRGELLRKINQYL-----LGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSII 295 (849)
Q Consensus 237 ~~l~~~---------~------~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~il 295 (849)
..-... . ..-..++ +..+.+++ .+.+.++|+||++..+......+...+..-+ ++.+|
T Consensus 97 ~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~I 175 (365)
T PRK07471 97 AGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFL 175 (365)
T ss_pred ccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEE
Confidence 110000 0 0012333 22333333 3566799999999888888888888887655 66666
Q ss_pred EEecch-hhhhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHh
Q 003086 296 ITTRNG-KVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVG 368 (849)
Q Consensus 296 vTtr~~-~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~ 368 (849)
++|.+. .+...+.... ..+.+.+++.++..+++.+.... ...+....+++.++|.|+.+..+.
T Consensus 176 L~t~~~~~llpti~SRc-~~i~l~~l~~~~i~~~L~~~~~~---------~~~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 176 LVSHAPARLLPTIRSRC-RKLRLRPLAPEDVIDALAAAGPD---------LPDDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EEECCchhchHHhhccc-eEEECCCCCHHHHHHHHHHhccc---------CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 666553 4433333333 68999999999999999876411 112223678999999998765553
No 83
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.42 E-value=2.6e-08 Score=100.51 Aligned_cols=224 Identities=17% Similarity=0.069 Sum_probs=137.8
Q ss_pred hhhhhhcCCCcceEEecCCcccccccccccc-------ccCCCCccceEeccCCCCCcc----cCccccCCCCCcEEeec
Q 003086 549 NLATKFSECRYLRVLDISRSIFELPLKGLLS-------QTGSLQHLSYLCLSNTHPLIH----LPPSLKKLKNLQILDVS 617 (849)
Q Consensus 549 ~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~-------~~~~l~~Lr~L~L~~~~~~~~----lp~~i~~L~~L~~L~L~ 617 (849)
.+.+.+.+.+.|+..++++-........+|+ .+-.+++|++||||.|-.-.. +-.-+.++++|++|.|.
T Consensus 49 ~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~ 128 (382)
T KOG1909|consen 49 AIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLN 128 (382)
T ss_pred HHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhh
Confidence 3556677778888888887543222234443 445667999999999933222 22335679999999998
Q ss_pred cccCCccCC-------------hhhhcccCCcEeeccCCCCcc----ccCccccccccccccCcccccCCCCCCCCCchh
Q 003086 618 YCQNLKMLP-------------SYVQSFIQLRALDVTHCGSLQ----YLPKGFGKLLNLEVLLGFRPARSSQPEGCRISE 680 (849)
Q Consensus 618 ~~~~~~~lp-------------~~i~~l~~L~~L~l~~~~~~~----~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~ 680 (849)
+|-....-. ..+.+-+.||.+...+|++-. .+...+...+.|+++.+..+.............
T Consensus 129 N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~ea 208 (382)
T KOG1909|consen 129 NCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEA 208 (382)
T ss_pred cCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHH
Confidence 664322111 122345678888888887642 122335666778888777765544333334456
Q ss_pred hhccccccceeeeeccCcccc----hHhhcCCCCCCeEEEEeecCCCCchhhhccccC-CCCCCCeEEEeccCCCC----
Q 003086 681 LKNLTRLRKLGLQLTCGDEIE----EDALVNLRELQFLSISCFDSHGSDLVAKIDELY-PPEQLDELSLNFYPGKT---- 751 (849)
Q Consensus 681 l~~l~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~---- 751 (849)
+.++++|+.|++..|.++... ...++.+++|+.|++++|.+...........+. ..|+|+.|.+.++....
T Consensus 209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~ 288 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL 288 (382)
T ss_pred HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH
Confidence 888888888888888654332 256777888888888888776554443333332 25677777766543211
Q ss_pred -CCCcCCCCCCCCCceEEEeeCCc
Q 003086 752 -SPVWLNPASLPMLRYLSVCSGNL 774 (849)
Q Consensus 752 -~p~~~~~~~l~~L~~L~L~~n~l 774 (849)
.-..+ ...|.|..|+|++|.+
T Consensus 289 ~la~~~--~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 289 ALAACM--AEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHH--hcchhhHHhcCCcccc
Confidence 00111 3467777777777766
No 84
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=5e-06 Score=90.15 Aligned_cols=176 Identities=10% Similarity=0.005 Sum_probs=110.4
Q ss_pred ccccccccHHHHHHHHhccCC--------CeEEEEEEcCCCCcHHHHHHHHhcChhhh------------------cccC
Q 003086 162 LVVGLEGDTRKIKDWLFEAEE--------GILAIGVVGMGGLGKTTIAQKVFNDREIE------------------NWFE 215 (849)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~~~~--------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~------------------~~f~ 215 (849)
+++|-+.-++.+...+..+.. -.+.+.++|++|+|||++|+.+...-.-. ..+.
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hp 85 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHP 85 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 588999989999998877531 24678899999999999999885520000 0011
Q ss_pred ceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHh-----cCccEEEEEcCCCccCHHHHHHHHhcCCCCC
Q 003086 216 RRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYL-----LGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK 290 (849)
Q Consensus 216 ~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~ 290 (849)
-+.++..... .-..+++.+ +.+.+ .+++-++|+|+++..+....+.+...+...+
T Consensus 86 D~~~i~~~~~-------------------~i~i~~iR~-l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~ 145 (394)
T PRK07940 86 DVRVVAPEGL-------------------SIGVDEVRE-LVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPP 145 (394)
T ss_pred CEEEeccccc-------------------cCCHHHHHH-HHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCC
Confidence 1122211100 012222222 22211 3455688999999877777778888776544
Q ss_pred -CceEEEEecc-hhhhhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHh
Q 003086 291 -GSSIIITTRN-GKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVG 368 (849)
Q Consensus 291 -~s~ilvTtr~-~~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~ 368 (849)
+..+|++|.+ ..+...+.... ..+.+.+++.++..+.+.+... ...+.+..++..++|.|..+..+.
T Consensus 146 ~~~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~~~~~----------~~~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 146 PRTVWLLCAPSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLVRRDG----------VDPETARRAARASQGHIGRARRLA 214 (394)
T ss_pred CCCeEEEEECChHHChHHHHhhC-eEEECCCCCHHHHHHHHHHhcC----------CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 5555555544 45554444333 6889999999999988875420 114557789999999997665443
No 85
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.42 E-value=3.7e-06 Score=94.32 Aligned_cols=194 Identities=15% Similarity=0.090 Sum_probs=113.4
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhc
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLG 240 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 240 (849)
.+++|.+..++.+...+..+. -.+.+.++|+.|+||||+|+.+.+.- .|.-|.... .+..-...+.+.....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L------~C~~~~~~~-~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAI------NCLNPKDGD-CCNSCSVCESINTNQS 87 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHh------cCCCCCCCC-CCcccHHHHHHHcCCC
Confidence 468999999999998887643 24678899999999999999986621 111121110 1111111111111110
Q ss_pred CCC------CCCCHHHHHHHH---HHH-hcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEE-Eecchhhhhhcc
Q 003086 241 DAS------AGDDRGELLRKI---NQY-LLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIII-TTRNGKVSQKMG 308 (849)
Q Consensus 241 ~~~------~~~~~~~~~~~l---~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilv-Ttr~~~v~~~~~ 308 (849)
... .....+++.+.+ ... ..+++-++|+|+++..+...+..+...+...+ ...+|+ |+....+.....
T Consensus 88 ~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~ 167 (605)
T PRK05896 88 VDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTII 167 (605)
T ss_pred CceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHH
Confidence 000 001222222211 110 12344579999998876778888888887655 555554 444444443333
Q ss_pred ccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchh-HHHHHh
Q 003086 309 VKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPL-AIKAVG 368 (849)
Q Consensus 309 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PL-ai~~~~ 368 (849)
... ..+++.+++.++....+.+.+...+ .....+.+..+++.++|.+- |+..+-
T Consensus 168 SRc-q~ieF~~Ls~~eL~~~L~~il~keg-----i~Is~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 168 SRC-QRYNFKKLNNSELQELLKSIAKKEK-----IKIEDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred hhh-hhcccCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 223 6899999999999999988764321 11225667889999999765 444333
No 86
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=5.4e-06 Score=91.61 Aligned_cols=182 Identities=16% Similarity=0.084 Sum_probs=115.1
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcCh------h------------hh-cccCceEEEE
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDR------E------------IE-NWFERRMWVS 221 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~------~------------~~-~~f~~~~wv~ 221 (849)
.+++|-+..++.+...+..+. -...+.++|+.|+||||+|+.+.+.- . +. ..+..++.+.
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eid 91 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEID 91 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEe
Confidence 468999888888877776543 23478899999999999999886510 0 00 1112233333
Q ss_pred eCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEe-c
Q 003086 222 VSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITT-R 299 (849)
Q Consensus 222 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTt-r 299 (849)
.+....+.+ .+++++..... -..+++-++|+|+++..+...++.+...+.+-+ .+++|++| .
T Consensus 92 aas~~~vdd-IR~Iie~~~~~---------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte 155 (491)
T PRK14964 92 AASNTSVDD-IKVILENSCYL---------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTE 155 (491)
T ss_pred cccCCCHHH-HHHHHHHHHhc---------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 332222222 11222111100 013456799999998877788888988887755 66666555 4
Q ss_pred chhhhhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHH
Q 003086 300 NGKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIK 365 (849)
Q Consensus 300 ~~~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~ 365 (849)
...+...+.... ..+++.+++.++..+.+.+.+...+ ..--++....|++.++|.+-.+.
T Consensus 156 ~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Eg-----i~i~~eAL~lIa~~s~GslR~al 215 (491)
T PRK14964 156 VKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKEN-----IEHDEESLKLIAENSSGSMRNAL 215 (491)
T ss_pred hHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHH
Confidence 445544444333 6889999999999999998874322 12235667789999999886443
No 87
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.40 E-value=5.5e-06 Score=84.07 Aligned_cols=153 Identities=12% Similarity=0.097 Sum_probs=92.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCcc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKR 263 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 263 (849)
...+.|+|++|+|||+|++.+++. ....-..+.++++..... ...+..+.+ .. -
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~-------------------~~~~~~~~~----~~-~ 98 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW-------------------FVPEVLEGM----EQ-L 98 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh-------------------hhHHHHHHh----hh-C
Confidence 457899999999999999999884 322333466776642100 001111111 11 2
Q ss_pred EEEEEcCCCccC-HHHHHH-HHhcCC---CCCCceEEEEecch---------hhhhhccccccccccCCCCChhhHHHHH
Q 003086 264 YLIVMDDVWGED-LAWWRR-IYEGLP---KGKGSSIIITTRNG---------KVSQKMGVKKARMHFPKFLSEDDSWLLF 329 (849)
Q Consensus 264 ~LlVlDdv~~~~-~~~~~~-l~~~l~---~~~~s~ilvTtr~~---------~v~~~~~~~~~~~~~l~~L~~~e~~~lf 329 (849)
-+|++||+.... ...|+. +...+. ...+.++|+||+.. ++...+... .+++++++++++-.+++
T Consensus 99 dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g--~~~~l~~~~~~~~~~~l 176 (235)
T PRK08084 99 SLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWG--QIYKLQPLSDEEKLQAL 176 (235)
T ss_pred CEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCC--ceeeecCCCHHHHHHHH
Confidence 389999996521 233432 222222 12234799999753 233333332 48899999999999999
Q ss_pred HHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHhh
Q 003086 330 RKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVGG 369 (849)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~ 369 (849)
.+++... ...--+++...|++.+.|..-++..+-.
T Consensus 177 ~~~a~~~-----~~~l~~~v~~~L~~~~~~d~r~l~~~l~ 211 (235)
T PRK08084 177 QLRARLR-----GFELPEDVGRFLLKRLDREMRTLFMTLD 211 (235)
T ss_pred HHHHHHc-----CCCCCHHHHHHHHHhhcCCHHHHHHHHH
Confidence 8876432 1233467888899999887766554433
No 88
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.40 E-value=9.2e-06 Score=88.83 Aligned_cols=184 Identities=16% Similarity=0.081 Sum_probs=112.9
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChh--hh------------------cccCceEEE
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDRE--IE------------------NWFERRMWV 220 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~--~~------------------~~f~~~~wv 220 (849)
.+++|.+..++.+.+++..+. -...+.++|++|+||||+|+.+...-. .. .+++ ++++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~-~~~~ 91 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD-VIEI 91 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEe
Confidence 468999999999999887653 345778999999999999988865311 00 0122 1222
Q ss_pred EeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEec
Q 003086 221 SVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITTR 299 (849)
Q Consensus 221 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTtr 299 (849)
..+....+. -.+++...+... -..+++-++|+|++.......++.+...+...+ .+.+|++|.
T Consensus 92 ~~~~~~~~~-~~~~l~~~~~~~---------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~ 155 (355)
T TIGR02397 92 DAASNNGVD-DIREILDNVKYA---------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATT 155 (355)
T ss_pred eccccCCHH-HHHHHHHHHhcC---------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeC
Confidence 221111111 111222111100 012455689999997755667788888886544 666666665
Q ss_pred chh-hhhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHh
Q 003086 300 NGK-VSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVG 368 (849)
Q Consensus 300 ~~~-v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~ 368 (849)
+.. +...+.... ..+++.+++.++..+++...+-..+ ...-++.+..+++.++|.|..+....
T Consensus 156 ~~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g-----~~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 156 EPHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDKEG-----IKIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred CHHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCChHHHHHHH
Confidence 433 333332222 5778899999999999988774322 11225677889999999997665443
No 89
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=5.1e-06 Score=91.34 Aligned_cols=198 Identities=15% Similarity=0.113 Sum_probs=114.6
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEE-eCCccCHHHHHHHHHHHh
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVS-VSQTFTEEQIMRSMLRNL 239 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~i~~~l 239 (849)
.+++|.+.-++.|..++..+. -...+.++|++|+||||+|+.+.+.-.-........|.. ...++..=...+.+....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 468898888888888887653 234588999999999999999866311111010000110 000000001111111110
Q ss_pred cCC-----C-CCCCHHHHHHHHHHHh-----cCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEe-cchhhhhh
Q 003086 240 GDA-----S-AGDDRGELLRKINQYL-----LGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITT-RNGKVSQK 306 (849)
Q Consensus 240 ~~~-----~-~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTt-r~~~v~~~ 306 (849)
... . .....+++.+ +.+.+ .+.+-++|+|++...+...++.+...+.+.+ .+.+|++| +...+...
T Consensus 95 ~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~t 173 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (397)
T ss_pred CCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHH
Confidence 000 0 0111233332 22222 3456689999998766778888988887665 56655554 44444443
Q ss_pred ccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHH
Q 003086 307 MGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKA 366 (849)
Q Consensus 307 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~ 366 (849)
..... ..+++.+++.++....+...+-... ..-.++.+..|++.++|.+--+..
T Consensus 174 l~sR~-~~v~f~~l~~~ei~~~l~~~~~~~g-----~~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 174 IASRC-QRFNFKRIPLEEIQQQLQGICEAEG-----ISVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHH-HHhhcCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 33222 5789999999999998888763221 223367788999999998864443
No 90
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=6.1e-06 Score=93.91 Aligned_cols=196 Identities=13% Similarity=0.064 Sum_probs=114.4
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcc--cCceEEEEeCCccCHHHHHHHHHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENW--FERRMWVSVSQTFTEEQIMRSMLRN 238 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--f~~~~wv~~s~~~~~~~~~~~i~~~ 238 (849)
.+++|-+.-++.|..++..+. -...+.++|..|+||||+|+.+.+.-.-... ......-.| ..-...+.|...
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC----g~C~~C~~i~~g 90 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC----GVCQACRDIDSG 90 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC----CccHHHHHHHcC
Confidence 468998888888888887653 3456789999999999999998542100000 000000000 000111111100
Q ss_pred hcCC------CCCCCHHHHHHHHHHH----hcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEe-cchhhhhh
Q 003086 239 LGDA------SAGDDRGELLRKINQY----LLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITT-RNGKVSQK 306 (849)
Q Consensus 239 l~~~------~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTt-r~~~v~~~ 306 (849)
-... ......+++.+.+... ..++.-++|||+++..+...++.++..+..-+ ..++|++| ....+...
T Consensus 91 ~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~T 170 (618)
T PRK14951 91 RFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVT 170 (618)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHH
Confidence 0000 0011222332222211 13455699999999888888999998887755 55665554 44444433
Q ss_pred ccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHH
Q 003086 307 MGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAV 367 (849)
Q Consensus 307 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 367 (849)
..... ..+++++++.++..+.+.+.+...+ .....+....|++.++|.+--+..+
T Consensus 171 IlSRc-~~~~f~~Ls~eei~~~L~~i~~~eg-----i~ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 171 VLSRC-LQFNLRPMAPETVLEHLTQVLAAEN-----VPAEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred HHHhc-eeeecCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 33323 6899999999999999988764322 1223566788999999988655443
No 91
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.38 E-value=3.4e-07 Score=101.70 Aligned_cols=197 Identities=27% Similarity=0.260 Sum_probs=147.0
Q ss_pred eEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCC-CCcEEeeccccCCccCChhhhcccCCcEee
Q 003086 561 RVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLK-NLQILDVSYCQNLKMLPSYVQSFIQLRALD 639 (849)
Q Consensus 561 r~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~-~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~ 639 (849)
..|+++.+.+. ..+..+..++.+..|++.++ .+..+|...+.+. +|+.|++++| .+..+|..++.+++|+.|+
T Consensus 96 ~~l~~~~~~~~----~~~~~~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~ 169 (394)
T COG4886 96 PSLDLNLNRLR----SNISELLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLD 169 (394)
T ss_pred ceeeccccccc----cCchhhhcccceeEEecCCc-ccccCccccccchhhccccccccc-chhhhhhhhhccccccccc
Confidence 35778888764 34455667789999999999 8999999888885 9999999955 4677777899999999999
Q ss_pred ccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCeEEEEee
Q 003086 640 VTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSISCF 719 (849)
Q Consensus 640 l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~ 719 (849)
++.|++. .+|...+.+++|+.|++..+.. ...+.....+..|..|.+.+|.... ....+.++.++..|.+..|
T Consensus 170 l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i-----~~l~~~~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n 242 (394)
T COG4886 170 LSFNDLS-DLPKLLSNLSNLNNLDLSGNKI-----SDLPPEIELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNN 242 (394)
T ss_pred cCCchhh-hhhhhhhhhhhhhheeccCCcc-----ccCchhhhhhhhhhhhhhcCCccee-cchhhhhcccccccccCCc
Confidence 9999987 7777777889999998666532 2223333456669999999884222 2245677788888887766
Q ss_pred cCCCCchhhhccccCCCCCCCeEEEeccCCCCCCCcCCCCCCCCCceEEEeeCCccccc
Q 003086 720 DSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSPVWLNPASLPMLRYLSVCSGNLSKMH 778 (849)
Q Consensus 720 ~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~ 778 (849)
.+.. ....+..+++++.|+++++.....+. + +.+.+|+.|++++|.+....
T Consensus 243 ~~~~-----~~~~~~~l~~l~~L~~s~n~i~~i~~-~--~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 243 KLED-----LPESIGNLSNLETLDLSNNQISSISS-L--GSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred eeee-----ccchhccccccceecccccccccccc-c--cccCccCEEeccCccccccc
Confidence 5432 13345567779999998877666454 3 78899999999998776543
No 92
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.38 E-value=1.1e-06 Score=89.03 Aligned_cols=88 Identities=19% Similarity=0.134 Sum_probs=61.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCc--cCHHHHHHHHHHHhcCCCCCCCHH-------HHHHHH
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQT--FTEEQIMRSMLRNLGDASAGDDRG-------ELLRKI 255 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~-------~~~~~l 255 (849)
..++|+|++|+|||||++.++++.... +|+.++|+.+.+. +++.++++.+...+-....+.+.. ...+..
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a 95 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKA 95 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 468999999999999999999975444 8999999998776 799999999933322221111111 112222
Q ss_pred HHH-hcCccEEEEEcCCCc
Q 003086 256 NQY-LLGKRYLIVMDDVWG 273 (849)
Q Consensus 256 ~~~-l~~~~~LlVlDdv~~ 273 (849)
..+ -.++++++++|++..
T Consensus 96 ~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 96 KRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHCCCCEEEEEECHHH
Confidence 222 258999999999965
No 93
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.37 E-value=4.5e-08 Score=96.21 Aligned_cols=137 Identities=20% Similarity=0.126 Sum_probs=96.8
Q ss_pred hhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcc
Q 003086 553 KFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSF 632 (849)
Q Consensus 553 ~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l 632 (849)
.+...+.|+.||||+|.|. .+-.++.-++.+|.|++++| .+..+-. +..|++|+.|||++|. +..+...-.++
T Consensus 279 ~~dTWq~LtelDLS~N~I~----~iDESvKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KL 351 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLIT----QIDESVKLAPKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKL 351 (490)
T ss_pred ecchHhhhhhccccccchh----hhhhhhhhccceeEEecccc-ceeeehh-hhhcccceEeecccch-hHhhhhhHhhh
Confidence 3455678999999999986 55677778899999999999 6766654 8889999999999664 44454444577
Q ss_pred cCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccc
Q 003086 633 IQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIE 701 (849)
Q Consensus 633 ~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 701 (849)
.|.+.|.+++|.+. .-+++++|-+|..|++.++...+ -.....++++|.|..|.+.+|.+....
T Consensus 352 GNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~---ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 352 GNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEE---LDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred cCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhh---HHHhcccccccHHHHHhhcCCCccccc
Confidence 88888988888653 33566777777777755442211 122445777788887777777655443
No 94
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=7.4e-06 Score=92.79 Aligned_cols=177 Identities=15% Similarity=0.089 Sum_probs=111.1
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhh-------------------cccCceEEEE
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIE-------------------NWFERRMWVS 221 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~~wv~ 221 (849)
.+++|-+.-++.+..++..+. -...+.++|+.|+||||+|+.+.+.-.-. +.|..++++.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~ 94 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVD 94 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEee
Confidence 468899999999988887653 23456899999999999999986531100 0111122222
Q ss_pred eCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH----hcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEE
Q 003086 222 VSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQY----LLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIII 296 (849)
Q Consensus 222 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilv 296 (849)
.+... ..+++.+.+... ..+++-++|+|+++..+...++.+...+..-+ .+.+|+
T Consensus 95 ~~~~~--------------------~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL 154 (527)
T PRK14969 95 AASNT--------------------QVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFIL 154 (527)
T ss_pred ccccC--------------------CHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEE
Confidence 21111 122222111111 13566799999999877777888888887755 566655
Q ss_pred Ee-cchhhhhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHH
Q 003086 297 TT-RNGKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAI 364 (849)
Q Consensus 297 Tt-r~~~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 364 (849)
+| ....+...+.... ..+++++++.++....+.+.+...+ ....++....|++.++|.+--+
T Consensus 155 ~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~eg-----i~~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 155 ATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQEN-----IPFDATALQLLARAAAGSMRDA 217 (527)
T ss_pred EeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHH
Confidence 55 4343332222222 6899999999999998888763221 1123456688999999988543
No 95
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.37 E-value=8.1e-06 Score=90.65 Aligned_cols=188 Identities=12% Similarity=0.112 Sum_probs=111.2
Q ss_pred cccccccc--HHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhccc--CceEEEEeCCccCHHHHHHHHHH
Q 003086 162 LVVGLEGD--TRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWF--ERRMWVSVSQTFTEEQIMRSMLR 237 (849)
Q Consensus 162 ~~vGr~~~--~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~i~~ 237 (849)
.++|.... ......+...++.....+.|+|..|+|||+|++.+.+. +.... ..+++++ .+++...+..
T Consensus 117 Fv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~--l~~~~~~~~v~yv~------~~~f~~~~~~ 188 (450)
T PRK14087 117 FVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNY--IESNFSDLKVSYMS------GDEFARKAVD 188 (450)
T ss_pred ccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEE------HHHHHHHHHH
Confidence 35565443 22222333333323456899999999999999999883 32222 2344443 4567777776
Q ss_pred HhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccC--HHHHHHHHhcCCC--CCCceEEEEecch---------hhh
Q 003086 238 NLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGED--LAWWRRIYEGLPK--GKGSSIIITTRNG---------KVS 304 (849)
Q Consensus 238 ~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~~~l~~~l~~--~~~s~ilvTtr~~---------~v~ 304 (849)
.+.... ...+.+++.+. ..-+||+||+.... ....+.+...+.. ..|..||+|+... .+.
T Consensus 189 ~l~~~~------~~~~~~~~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~ 261 (450)
T PRK14087 189 ILQKTH------KEIEQFKNEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLI 261 (450)
T ss_pred HHHHhh------hHHHHHHHHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHH
Confidence 664311 12233444333 33488999996532 2223344444432 2355788887532 222
Q ss_pred hhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHhh
Q 003086 305 QKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVGG 369 (849)
Q Consensus 305 ~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~ 369 (849)
..+... ..+++++++.++..+++.+.+-...- ...-.+++...|++.++|.|-.+.-+..
T Consensus 262 SR~~~G--l~~~L~~pd~e~r~~iL~~~~~~~gl---~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 262 TRFNMG--LSIAIQKLDNKTATAIIKKEIKNQNI---KQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHhCC--ceeccCCcCHHHHHHHHHHHHHhcCC---CCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 222222 46789999999999999999843211 1134467889999999999987665543
No 96
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.36 E-value=3.7e-06 Score=85.37 Aligned_cols=173 Identities=12% Similarity=0.077 Sum_probs=97.8
Q ss_pred ccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCC
Q 003086 164 VGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDAS 243 (849)
Q Consensus 164 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 243 (849)
.|...........+.........+.|+|.+|+|||+||+.+++... ... ....+++..... .. +
T Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~-~~~~~i~~~~~~------~~----~---- 85 (227)
T PRK08903 22 AGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS-YGG-RNARYLDAASPL------LA----F---- 85 (227)
T ss_pred cCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEehHHhH------HH----H----
Confidence 3554444333333322222346788999999999999999988421 111 234555543211 00 0
Q ss_pred CCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCC--CCCc-eEEEEecchhhhhhccc------ccccc
Q 003086 244 AGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPK--GKGS-SIIITTRNGKVSQKMGV------KKARM 314 (849)
Q Consensus 244 ~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~--~~~s-~ilvTtr~~~v~~~~~~------~~~~~ 314 (849)
... ...-+||+||+...+....+.+...+.. ..+. .||+|++.......... .....
T Consensus 86 -------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~ 151 (227)
T PRK08903 86 -------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLV 151 (227)
T ss_pred -------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeE
Confidence 111 2234799999976433344445454432 2233 46666664322111110 00147
Q ss_pred ccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHhhhh
Q 003086 315 HFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVGGMM 371 (849)
Q Consensus 315 ~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l 371 (849)
+++.++++++...++.+.+-.. ...--++..+.+++.+.|.+..+..+...+
T Consensus 152 i~l~pl~~~~~~~~l~~~~~~~-----~v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 152 YELKPLSDADKIAALKAAAAER-----GLQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred EEecCCCHHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 8999999998878777654221 122335677888899999998877666554
No 97
>PRK09087 hypothetical protein; Validated
Probab=98.36 E-value=1.6e-05 Score=79.88 Aligned_cols=141 Identities=13% Similarity=0.060 Sum_probs=87.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCcc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKR 263 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 263 (849)
.+.+.|+|++|+|||+|++.+++.. ...+++.. .+..+++..+ .+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~-------~~~~i~~~------~~~~~~~~~~--------------------~~-- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS-------DALLIHPN------EIGSDAANAA--------------------AE-- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc-------CCEEecHH------HcchHHHHhh--------------------hc--
Confidence 4568999999999999999888642 12244322 1111121111 11
Q ss_pred EEEEEcCCCcc--CHHHHHHHHhcCCCCCCceEEEEecc---------hhhhhhccccccccccCCCCChhhHHHHHHHH
Q 003086 264 YLIVMDDVWGE--DLAWWRRIYEGLPKGKGSSIIITTRN---------GKVSQKMGVKKARMHFPKFLSEDDSWLLFRKI 332 (849)
Q Consensus 264 ~LlVlDdv~~~--~~~~~~~l~~~l~~~~~s~ilvTtr~---------~~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~ 332 (849)
-+|++||+... +.+.+-.+...+. ..|..||+|++. .++...+... ..+++++++.++..+++++.
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~-~~g~~ilits~~~p~~~~~~~~dL~SRl~~g--l~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVR-QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAA--TVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHH-hCCCeEEEECCCChHHhccccccHHHHHhCC--ceeecCCCCHHHHHHHHHHH
Confidence 27888999642 2222222222222 236778998873 2233333333 58999999999999999999
Q ss_pred hhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHH
Q 003086 333 AFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAV 367 (849)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 367 (849)
+... ...--+++...|++.+.|..-++..+
T Consensus 166 ~~~~-----~~~l~~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 166 FADR-----QLYVDPHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHHc-----CCCCCHHHHHHHHHHhhhhHHHHHHH
Confidence 8432 12234678888999998888776643
No 98
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.33 E-value=2.1e-06 Score=89.71 Aligned_cols=294 Identities=17% Similarity=0.124 Sum_probs=184.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccC-ceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFE-RRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGK 262 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 262 (849)
.+.+.++|.|||||||++-.+.. +..-|. .+.++.+.+-.+...+.-.....++.... +-+.....+.....++
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~--~g~~~~~~~~~~~~~r 88 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ--PGDSAVDTLVRRIGDR 88 (414)
T ss_pred hheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc--cchHHHHHHHHHHhhh
Confidence 67899999999999999988876 455664 46677777777777777777776776554 2233344555666788
Q ss_pred cEEEEEcCCCccCHHHHHHHHhcCCCCCCceEEEEecchhhhhhccccccccccCCCCChh-hHHHHHHHHhhccCCCCC
Q 003086 263 RYLIVMDDVWGEDLAWWRRIYEGLPKGKGSSIIITTRNGKVSQKMGVKKARMHFPKFLSED-DSWLLFRKIAFAATEGEC 341 (849)
Q Consensus 263 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~s~ilvTtr~~~v~~~~~~~~~~~~~l~~L~~~-e~~~lf~~~~~~~~~~~~ 341 (849)
+.++|+||...--...-.-+...+.....-.|+.|+|..-... ......+.+|+.. ++.++|...+.....+..
T Consensus 89 r~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~-----ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~ 163 (414)
T COG3903 89 RALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVA-----GEVHRRVPSLSLFDEAIELFVCRAVLVALSFW 163 (414)
T ss_pred hHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhccc-----ccccccCCccccCCchhHHHHHHHHHhcccee
Confidence 9999999985411111111222233333667888888633222 2246677777665 788998887754433322
Q ss_pred CCCchhHHHHHHHHhcCCchhHHHHHhhhhhcCCCChHHHHHHHHhhhhhhcc-------CCchHHHHHHHhhhCCChhh
Q 003086 342 QHPSLEGVGKEIVEKCKGLPLAIKAVGGMMLYKPPTYNEWRRTADNFRDELAE-------NDDSVMASLQLSYDELPPYL 414 (849)
Q Consensus 342 ~~~~~~~~~~~i~~~c~G~PLai~~~~~~l~~~~~~~~~w~~~~~~~~~~~~~-------~~~~~~~~l~~sy~~L~~~~ 414 (849)
..........+|.++..|.|++|...++..+.-. +.+-..-++.-...+.+ ......+.+.+||.-|....
T Consensus 164 l~~~~~a~v~~icr~ldg~~laielaaarv~sl~--~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 164 LTDDNAAAVAEICRRLDGIPLAIELAAARVRSLS--PDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred ecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcC--HHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 2334466788999999999999999988876543 23332222221111111 14567888999999999999
Q ss_pred HHHHHHhccCCCCccccHHHHHHHhHhcCCCcCCCCCCHHHHHHHHHHhhhhccceEEeccccCCceeeeeecHHHHHHH
Q 003086 415 KSCFLSFSVYPEDCVIRKEQLVYWWIGEGFVPQRNGRSSIEAGEDCFSGLTNRCLVEVVDKAYNKMISTCKIHDMVRDLV 494 (849)
Q Consensus 415 k~cfl~~s~fp~~~~i~~~~li~~wia~g~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~Hdlv~~~~ 494 (849)
+-.|-.++.|...|.-. ...|.+-|-.. .-+.......+-.+++.+++-..... + ...|+.-+-+|.|+
T Consensus 242 ~~~~~rLa~~~g~f~~~----l~~~~a~g~~~----~~~~y~~~~a~~ll~~kslv~a~~~~--~-~a~~Rl~eT~r~Ya 310 (414)
T COG3903 242 RALFGRLAVFVGGFDLG----LALAVAAGADV----DVPRYLVLLALTLLVDKSLVVALDLL--G-RARYRLLETGRRYA 310 (414)
T ss_pred HHHhcchhhhhhhhccc----HHHHHhcCCcc----ccchHHHHHHHHHHhhccchhhhhhh--h-HHHHHHHHHHHHHH
Confidence 99999999998876655 23344433211 01122344456677888877654311 1 12355556666676
Q ss_pred HHHhhc
Q 003086 495 IRVAEE 500 (849)
Q Consensus 495 ~~~~~~ 500 (849)
..+..+
T Consensus 311 laeL~r 316 (414)
T COG3903 311 LAELHR 316 (414)
T ss_pred HHHHHh
Confidence 655543
No 99
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.33 E-value=4.6e-07 Score=85.99 Aligned_cols=123 Identities=28% Similarity=0.278 Sum_probs=48.4
Q ss_pred hccCccchhcccccccccchhhhhhhhhc-CCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccc
Q 003086 527 SNLKLRALMSTTKTAEVNNIASNLATKFS-ECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSL 605 (849)
Q Consensus 527 ~~~~lrsl~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i 605 (849)
.+.++|.|.+.+.... .+ ..++ .+.+|++|+|++|.+. .+ +.+..+++|+.|++++| .+..++..+
T Consensus 17 n~~~~~~L~L~~n~I~------~I-e~L~~~l~~L~~L~Ls~N~I~----~l-~~l~~L~~L~~L~L~~N-~I~~i~~~l 83 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS------TI-ENLGATLDKLEVLDLSNNQIT----KL-EGLPGLPRLKTLDLSNN-RISSISEGL 83 (175)
T ss_dssp --------------------------S--TT-TT--EEE-TTS--S-------TT----TT--EEE--SS----S-CHHH
T ss_pred cccccccccccccccc------cc-cchhhhhcCCCEEECCCCCCc----cc-cCccChhhhhhcccCCC-CCCccccch
Confidence 3455666665554321 12 2344 5789999999999996 33 46788999999999999 888887655
Q ss_pred -cCCCCCcEEeeccccCC--ccCChhhhcccCCcEeeccCCCCccccCc----cccccccccccCc
Q 003086 606 -KKLKNLQILDVSYCQNL--KMLPSYVQSFIQLRALDVTHCGSLQYLPK----GFGKLLNLEVLLG 664 (849)
Q Consensus 606 -~~L~~L~~L~L~~~~~~--~~lp~~i~~l~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~~ 664 (849)
..+++|++|++++|... ..+ ..+..+++|++|++.+|++.. .+. .+..+++|+.|+.
T Consensus 84 ~~~lp~L~~L~L~~N~I~~l~~l-~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKISDLNEL-EPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp HHH-TT--EEE-TTS---SCCCC-GGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETT
T ss_pred HHhCCcCCEEECcCCcCCChHHh-HHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCC
Confidence 46999999999977642 222 457789999999999998762 221 1345555555553
No 100
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.32 E-value=1.1e-06 Score=92.30 Aligned_cols=100 Identities=17% Similarity=0.139 Sum_probs=66.1
Q ss_pred HHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCcc--CHHHHHHHHHHHhcCCCCCCCHH
Q 003086 172 KIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTF--TEEQIMRSMLRNLGDASAGDDRG 249 (849)
Q Consensus 172 ~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~ 249 (849)
++++.+..-.. -....|+|++|+||||||+.+|++.... +|+.++||.+.+.. .+.++++.|...+-......+..
T Consensus 158 rvID~l~PIGk-GQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~ 235 (416)
T PRK09376 158 RIIDLIAPIGK-GQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAE 235 (416)
T ss_pred eeeeeeccccc-CceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHH
Confidence 45555554322 2357899999999999999999964444 89999999999887 77788888764322222222111
Q ss_pred HH-------HHHHHHH-hcCccEEEEEcCCCc
Q 003086 250 EL-------LRKINQY-LLGKRYLIVMDDVWG 273 (849)
Q Consensus 250 ~~-------~~~l~~~-l~~~~~LlVlDdv~~ 273 (849)
.. .+.-..+ -.+++++|++|++..
T Consensus 236 ~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 236 RHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 11 1111111 267999999999965
No 101
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.32 E-value=7.7e-06 Score=81.84 Aligned_cols=181 Identities=17% Similarity=0.210 Sum_probs=101.4
Q ss_pred ccccccc-HHHHHHHHhc-cCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhccc-C-ceEEEEeCCccCHHHHHHHHHHH
Q 003086 163 VVGLEGD-TRKIKDWLFE-AEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWF-E-RRMWVSVSQTFTEEQIMRSMLRN 238 (849)
Q Consensus 163 ~vGr~~~-~~~l~~~L~~-~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-~-~~~wv~~s~~~~~~~~~~~i~~~ 238 (849)
++|-..+ .-.....+.. ++.....+.|+|..|+|||.|.+.+++. ..... . .+++++ ..++...+...
T Consensus 11 v~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~~------~~~f~~~~~~~ 82 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYLS------AEEFIREFADA 82 (219)
T ss_dssp --TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEEE------HHHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceeec------HHHHHHHHHHH
Confidence 3454322 2333333433 3333456889999999999999999984 33322 2 355664 44666666666
Q ss_pred hcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccC-HHHHH-HHHhcCCC--CCCceEEEEecch---------hhhh
Q 003086 239 LGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGED-LAWWR-RIYEGLPK--GKGSSIIITTRNG---------KVSQ 305 (849)
Q Consensus 239 l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-~~~~~-~l~~~l~~--~~~s~ilvTtr~~---------~v~~ 305 (849)
+... ... .+++.+. .-=+|++||++... ...|. .+...+.. ..|.+||+|++.. ++..
T Consensus 83 ~~~~----~~~----~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S 153 (219)
T PF00308_consen 83 LRDG----EIE----EFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS 153 (219)
T ss_dssp HHTT----SHH----HHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH
T ss_pred HHcc----cch----hhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh
Confidence 5431 222 2333333 23489999997632 23333 23333322 2377899999642 2233
Q ss_pred hccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHH
Q 003086 306 KMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAV 367 (849)
Q Consensus 306 ~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 367 (849)
.+... ..+++++.+.++..+++.+.+.... ..-.+++++.|++.+.+..-.+..+
T Consensus 154 Rl~~G--l~~~l~~pd~~~r~~il~~~a~~~~-----~~l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 154 RLSWG--LVVELQPPDDEDRRRILQKKAKERG-----IELPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHCS--EEEEE----HHHHHHHHHHHHHHTT-------S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred hHhhc--chhhcCCCCHHHHHHHHHHHHHHhC-----CCCcHHHHHHHHHhhcCCHHHHHHH
Confidence 33333 4789999999999999999985332 2234677778888877666554433
No 102
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.29 E-value=9.7e-06 Score=83.34 Aligned_cols=166 Identities=17% Similarity=0.244 Sum_probs=110.0
Q ss_pred CCccccccccHHHHHHHHhccCCC-eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHH
Q 003086 160 HTLVVGLEGDTRKIKDWLFEAEEG-ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRN 238 (849)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 238 (849)
++.+.+|+.++..+..++...+.. +..|.|+|-.|.|||.+.+.+++.. =...+|+++-+.++.+.++..|+.+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~-----n~~~vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL-----NLENVWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc-----CCcceeeehHHhccHHHHHHHHHHH
Confidence 457889999999999999876653 4556999999999999999999853 1236899999999999999999999
Q ss_pred hc-CCCCCCC-------HHHHHHHHHH--Hh--cCccEEEEEcCCCc---cCHHHHH---HHHhcCCCCCCceEEEEecc
Q 003086 239 LG-DASAGDD-------RGELLRKINQ--YL--LGKRYLIVMDDVWG---EDLAWWR---RIYEGLPKGKGSSIIITTRN 300 (849)
Q Consensus 239 l~-~~~~~~~-------~~~~~~~l~~--~l--~~~~~LlVlDdv~~---~~~~~~~---~l~~~l~~~~~s~ilvTtr~ 300 (849)
+. .+.+++. .......+.+ .. .++.++||||+++. .+...+. .+...++. ..-+|+++..
T Consensus 80 ~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~--~~i~iils~~ 157 (438)
T KOG2543|consen 80 SQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNE--PTIVIILSAP 157 (438)
T ss_pred hccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCC--CceEEEEecc
Confidence 96 3333221 1222222332 11 24689999999976 1111111 22222322 2333444433
Q ss_pred --hhh-hhhccccccccccCCCCChhhHHHHHHHH
Q 003086 301 --GKV-SQKMGVKKARMHFPKFLSEDDSWLLFRKI 332 (849)
Q Consensus 301 --~~v-~~~~~~~~~~~~~l~~L~~~e~~~lf~~~ 332 (849)
+.. ...++.....++.....+.+|...++.+.
T Consensus 158 ~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 158 SCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 222 22345555567778899999999998764
No 103
>PLN03150 hypothetical protein; Provisional
Probab=98.28 E-value=1.1e-06 Score=102.42 Aligned_cols=100 Identities=20% Similarity=0.249 Sum_probs=87.1
Q ss_pred cchhhhhhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCc
Q 003086 544 NNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLK 623 (849)
Q Consensus 544 ~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~ 623 (849)
+.+.+.+|..|.++++|+.|+|++|.+.+ .+|..++.+++|++|+|++|.....+|..++++++|++|+|++|....
T Consensus 428 n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g---~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g 504 (623)
T PLN03150 428 QGLRGFIPNDISKLRHLQSINLSGNSIRG---NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG 504 (623)
T ss_pred CCccccCCHHHhCCCCCCEEECCCCcccC---cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccc
Confidence 44556788899999999999999999984 788899999999999999996666899999999999999999999888
Q ss_pred cCChhhhcc-cCCcEeeccCCCCc
Q 003086 624 MLPSYVQSF-IQLRALDVTHCGSL 646 (849)
Q Consensus 624 ~lp~~i~~l-~~L~~L~l~~~~~~ 646 (849)
.+|..+..+ .++..+++.+|...
T Consensus 505 ~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 505 RVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred cCChHHhhccccCceEEecCCccc
Confidence 999988764 56788888888654
No 104
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=1.7e-05 Score=89.98 Aligned_cols=196 Identities=15% Similarity=0.068 Sum_probs=116.2
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHH--
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRN-- 238 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~-- 238 (849)
.+++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+.+.-.-....+ +-.|... ...+.|...
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg~C----~~C~~i~~~~~ 84 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCGVC----ESCVALAPNGP 84 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCccccc----HHHHHhhcccC
Confidence 468999999999999887653 234578999999999999999876311000000 0001100 001111100
Q ss_pred -------hcCCCCCCCHHHH---HHHHHHH-hcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEE-EEecchhhhh
Q 003086 239 -------LGDASAGDDRGEL---LRKINQY-LLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSII-ITTRNGKVSQ 305 (849)
Q Consensus 239 -------l~~~~~~~~~~~~---~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~il-vTtr~~~v~~ 305 (849)
+.... ....+++ .+.+... ..+++-++|+|+++..+...++.++..+..-+ ...+| +||....+..
T Consensus 85 ~~~dvieidaas-~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~ 163 (584)
T PRK14952 85 GSIDVVELDAAS-HGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLP 163 (584)
T ss_pred CCceEEEecccc-ccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHH
Confidence 00000 0112222 2222111 13556699999999877888999999888755 55544 5555555554
Q ss_pred hccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchh-HHHHHhhhh
Q 003086 306 KMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPL-AIKAVGGMM 371 (849)
Q Consensus 306 ~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PL-ai~~~~~~l 371 (849)
.+.... ..+++.+++.++..+.+.+.+...+ .....+....|++.++|.+- |+..+-.++
T Consensus 164 TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~eg-----i~i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 164 TIRSRT-HHYPFRLLPPRTMRALIARICEQEG-----VVVDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred HHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 443333 6899999999999999888764322 11224567789999999885 444444433
No 105
>PRK05642 DNA replication initiation factor; Validated
Probab=98.27 E-value=1.6e-05 Score=80.63 Aligned_cols=153 Identities=14% Similarity=0.179 Sum_probs=92.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCcc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKR 263 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 263 (849)
...+.|+|..|+|||.|++.+++. ....-..++|++..+ +... . ..+.+.+.+-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~------~~~~-------------~----~~~~~~~~~~- 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE------LLDR-------------G----PELLDNLEQY- 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH------HHhh-------------h----HHHHHhhhhC-
Confidence 367899999999999999999873 222224567776532 2111 0 1122222222
Q ss_pred EEEEEcCCCcc-CHHHHHH-HHhcCCC--CCCceEEEEecchh---------hhhhccccccccccCCCCChhhHHHHHH
Q 003086 264 YLIVMDDVWGE-DLAWWRR-IYEGLPK--GKGSSIIITTRNGK---------VSQKMGVKKARMHFPKFLSEDDSWLLFR 330 (849)
Q Consensus 264 ~LlVlDdv~~~-~~~~~~~-l~~~l~~--~~~s~ilvTtr~~~---------v~~~~~~~~~~~~~l~~L~~~e~~~lf~ 330 (849)
=+||+||+... ....|.. +...+.. ..|..||+|++... +...+... ..+++++++.++..++++
T Consensus 99 d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~g--l~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 99 ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLA--LVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcC--eeeecCCCCHHHHHHHHH
Confidence 27889999642 1234433 4444432 23677888887422 11122211 468899999999999999
Q ss_pred HHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHhh
Q 003086 331 KIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVGG 369 (849)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~ 369 (849)
+++.... ..-.+++...|++.+.|..-.+..+-.
T Consensus 177 ~ka~~~~-----~~l~~ev~~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 177 LRASRRG-----LHLTDEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred HHHHHcC-----CCCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 7764321 222367888899999888766554443
No 106
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.27 E-value=5.5e-06 Score=90.33 Aligned_cols=181 Identities=18% Similarity=0.195 Sum_probs=101.6
Q ss_pred CCCCCCccccccccHHHHHHHHhcc----C-------CCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCC
Q 003086 156 PVYDHTLVVGLEGDTRKIKDWLFEA----E-------EGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQ 224 (849)
Q Consensus 156 ~~~~~~~~vGr~~~~~~l~~~L~~~----~-------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 224 (849)
|.....++.|+++.+++|.+.+..+ + ...+-+.|+|++|+|||++|+.+++. ....| +.+..
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~ 189 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG 189 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch
Confidence 3344567999999999998877432 0 13456899999999999999999884 33222 22221
Q ss_pred ccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH-hcCccEEEEEcCCCcc-----------CHHHHH---HHHhcCC--
Q 003086 225 TFTEEQIMRSMLRNLGDASAGDDRGELLRKINQY-LLGKRYLIVMDDVWGE-----------DLAWWR---RIYEGLP-- 287 (849)
Q Consensus 225 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~-----------~~~~~~---~l~~~l~-- 287 (849)
..+.... + +.. ......+.+. -...+.+|+|||++.. +..... .+...+.
T Consensus 190 ----~~l~~~~---~-----g~~-~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~ 256 (364)
T TIGR01242 190 ----SELVRKY---I-----GEG-ARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGF 256 (364)
T ss_pred ----HHHHHHh---h-----hHH-HHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCC
Confidence 1111111 0 111 1112222222 2346789999998651 122222 2322222
Q ss_pred -CCCCceEEEEecchhhh-hhccc--cccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchh
Q 003086 288 -KGKGSSIIITTRNGKVS-QKMGV--KKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPL 362 (849)
Q Consensus 288 -~~~~s~ilvTtr~~~v~-~~~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PL 362 (849)
...+..||.||...+.. ..+.. .....+++...+.++..++|..++...... ...+ ...+++.+.|..-
T Consensus 257 ~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~--~~~~----~~~la~~t~g~sg 329 (364)
T TIGR01242 257 DPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA--EDVD----LEAIAKMTEGASG 329 (364)
T ss_pred CCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC--ccCC----HHHHHHHcCCCCH
Confidence 12367788888753321 11110 111468899999999999999887443211 1112 3567777877653
No 107
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.27 E-value=5.6e-06 Score=81.72 Aligned_cols=178 Identities=18% Similarity=0.233 Sum_probs=110.7
Q ss_pred CccccccccHHHHHHHHhcc---CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEA---EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLR 237 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 237 (849)
.+|+|-++-++++.=++... ++..-.|.++|++|.||||||.-+.+. ....+ -++-.....
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~----k~tsGp~le---------- 89 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANE--LGVNL----KITSGPALE---------- 89 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCe----Eeccccccc----------
Confidence 47999998888876666543 445778999999999999999999884 32222 111111111
Q ss_pred HhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCC---------CCCce-----------EEEE
Q 003086 238 NLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPK---------GKGSS-----------IIIT 297 (849)
Q Consensus 238 ~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~---------~~~s~-----------ilvT 297 (849)
...++...+-. | ...=++++|.++...+..-+.+..++.+ ++++| |=-|
T Consensus 90 ---------K~gDlaaiLt~-L-e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGAT 158 (332)
T COG2255 90 ---------KPGDLAAILTN-L-EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGAT 158 (332)
T ss_pred ---------ChhhHHHHHhc-C-CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeec
Confidence 11112221111 1 2234777899877555444445444332 22333 4468
Q ss_pred ecchhhhhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHhhh
Q 003086 298 TRNGKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVGGM 370 (849)
Q Consensus 298 tr~~~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~ 370 (849)
||.-.+..........+.+++-.+.+|..++..+.+..- ..+--++.+.+|+++..|-|--+.-+-+.
T Consensus 159 Tr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l-----~i~i~~~~a~eIA~rSRGTPRIAnRLLrR 226 (332)
T COG2255 159 TRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKIL-----GIEIDEEAALEIARRSRGTPRIANRLLRR 226 (332)
T ss_pred cccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHh-----CCCCChHHHHHHHHhccCCcHHHHHHHHH
Confidence 887655554433322577889999999999999988432 22334677899999999999755544443
No 108
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=1.7e-05 Score=93.69 Aligned_cols=189 Identities=12% Similarity=0.050 Sum_probs=113.4
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHH--
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRN-- 238 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~-- 238 (849)
.+++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+.+.-.-....... .|... ...+.|...
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~---pCg~C----~sC~~~~~g~~ 86 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTST---PCGEC----DSCVALAPGGP 86 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC---CCccc----HHHHHHHcCCC
Confidence 368999999999998887653 23567899999999999999986631100000000 00000 000111000
Q ss_pred -------hcCCCCCCCHHHHHHHHHHH-----hcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEe-cchhhh
Q 003086 239 -------LGDASAGDDRGELLRKINQY-----LLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITT-RNGKVS 304 (849)
Q Consensus 239 -------l~~~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTt-r~~~v~ 304 (849)
+... .....+++.+ +++. ..+++-++|||+++..+...++.|+..+.+-. .+.+|++| ....+.
T Consensus 87 ~~~dv~eidaa-s~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl 164 (824)
T PRK07764 87 GSLDVTEIDAA-SHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVI 164 (824)
T ss_pred CCCcEEEeccc-ccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhh
Confidence 0000 0012222222 2111 23566689999999888889999999998755 66655555 444454
Q ss_pred hhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHH
Q 003086 305 QKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIK 365 (849)
Q Consensus 305 ~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~ 365 (849)
..+.... ..|++.+++.++..+++.+.+-... ...-.+....|++.++|.+..+.
T Consensus 165 ~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EG-----v~id~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 165 GTIRSRT-HHYPFRLVPPEVMRGYLERICAQEG-----VPVEPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred HHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHH
Confidence 4444333 6889999999999998888763221 12234566789999999885443
No 109
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=6.4e-05 Score=85.04 Aligned_cols=196 Identities=14% Similarity=0.087 Sum_probs=114.9
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhc
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLG 240 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 240 (849)
.+++|-+..++.|...+..+. -...+.++|+.|+||||+|+.+.+.-.-...... ..+..-...+.|...-.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHhcCCC
Confidence 367898887778887776542 2467788999999999999998763211000000 00000011111111100
Q ss_pred CC------CCCCCHHHHHHHHHHH-----hcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEe-cchhhhhhc
Q 003086 241 DA------SAGDDRGELLRKINQY-----LLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITT-RNGKVSQKM 307 (849)
Q Consensus 241 ~~------~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTt-r~~~v~~~~ 307 (849)
.. ......+++. .+.+. ..+++-++|+|+++..+...++.+...+..-. ...+|++| ....+...+
T Consensus 88 pDv~eId~a~~~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI 166 (624)
T PRK14959 88 VDVVEIDGASNRGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTI 166 (624)
T ss_pred CceEEEecccccCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHH
Confidence 00 0001122221 12222 23566799999998877788888888886543 55555544 444444333
Q ss_pred cccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCch-hHHHHHhhhh
Q 003086 308 GVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLP-LAIKAVGGMM 371 (849)
Q Consensus 308 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P-Lai~~~~~~l 371 (849)
.... ..+++.+++.++....+.+.+.... .....+.++.|++.++|.+ .|+..+..++
T Consensus 167 ~SRc-q~i~F~pLs~~eL~~~L~~il~~eg-----i~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 167 VSRC-QHFTFTRLSEAGLEAHLTKVLGREG-----VDYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred Hhhh-hccccCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3222 5789999999999999988764322 1223567788999999965 5776665544
No 110
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=3.4e-08 Score=97.11 Aligned_cols=141 Identities=19% Similarity=0.153 Sum_probs=77.7
Q ss_pred hhhccccccceeeeecc-Ccccc-hHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCCCcCC
Q 003086 680 ELKNLTRLRKLGLQLTC-GDEIE-EDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSPVWLN 757 (849)
Q Consensus 680 ~l~~l~~L~~L~l~~~~-~~~~~-~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~ 757 (849)
.+.+-.+|+.|+++.+. ++... .-.+.+++.|..|+|+||.......-.....+ -++|..|.++|+......+-+.
T Consensus 229 ~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hi--se~l~~LNlsG~rrnl~~sh~~ 306 (419)
T KOG2120|consen 229 TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHI--SETLTQLNLSGYRRNLQKSHLS 306 (419)
T ss_pred HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhh--chhhhhhhhhhhHhhhhhhHHH
Confidence 44555556666665552 11111 13355677777777777765433211111111 3467777777765443221111
Q ss_pred --CCCCCCCceEEEeeCC-ccccccccccCcccccccceeecccccccccccccccccccccceeeecccc
Q 003086 758 --PASLPMLRYLSVCSGN-LSKMHDSFWGENNTVWKIEALLFESLSDLGIEWTRLQGVMPSLHIVNASWCP 825 (849)
Q Consensus 758 --~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~fp~~L~~L~l~~l~~L~l~~~~~~~~~p~L~~L~i~~c~ 825 (849)
..++|+|..|+|+.|. ++. .-+..-..|+ -|++|.+..|..+.-+--.....+|.|.+|++.+|-
T Consensus 307 tL~~rcp~l~~LDLSD~v~l~~--~~~~~~~kf~-~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 307 TLVRRCPNLVHLDLSDSVMLKN--DCFQEFFKFN-YLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HHHHhCCceeeeccccccccCc--hHHHHHHhcc-hheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 1578888888888753 332 1111112477 888888888876652212334578888888888764
No 111
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=3.2e-05 Score=84.70 Aligned_cols=181 Identities=17% Similarity=0.109 Sum_probs=108.1
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhh------hcccCceE-EEEeCCccCHHHHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREI------ENWFERRM-WVSVSQTFTEEQIMR 233 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~------~~~f~~~~-wv~~s~~~~~~~~~~ 233 (849)
.+++|.+..++.+.+.+..+. -.+.+.++|++|+||||+|+.+.+.-.- ...|...+ -+.......+.+ .+
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-i~ 94 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD-IR 94 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH-HH
Confidence 468899999999999887653 3467889999999999999998663110 01121111 111111111111 11
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEe-cchhhhhhccccc
Q 003086 234 SMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITT-RNGKVSQKMGVKK 311 (849)
Q Consensus 234 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTt-r~~~v~~~~~~~~ 311 (849)
++++.+... -..+++-++|+|++.......++.+...+...+ .+.+|++| ....+........
T Consensus 95 ~l~~~~~~~---------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~ 159 (367)
T PRK14970 95 NLIDQVRIP---------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRC 159 (367)
T ss_pred HHHHHHhhc---------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcc
Confidence 111111100 012455689999997755666778877775544 55555555 3333333222222
Q ss_pred cccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHH
Q 003086 312 ARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAI 364 (849)
Q Consensus 312 ~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 364 (849)
..++..++++++....+...+...+. .--++..+.|++.++|.+-.+
T Consensus 160 -~~v~~~~~~~~~l~~~l~~~~~~~g~-----~i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 160 -QIFDFKRITIKDIKEHLAGIAVKEGI-----KFEDDALHIIAQKADGALRDA 206 (367)
T ss_pred -eeEecCCccHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHhCCCCHHHH
Confidence 57889999999999999887743221 123577888999999876543
No 112
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=2.1e-05 Score=89.88 Aligned_cols=196 Identities=13% Similarity=0.054 Sum_probs=116.4
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccC--ceEEEEeCCccCHHHHHHHHHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFE--RRMWVSVSQTFTEEQIMRSMLRN 238 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~--~~~wv~~s~~~~~~~~~~~i~~~ 238 (849)
.+++|.+..++.|...+..+. -...+.++|+.|+||||+|+.+.+.-.-..... ...+-.+... .-.+.|...
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c----~~C~~i~~g 98 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG----EHCQAIMEG 98 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc----HHHHHHhcC
Confidence 478999999999999887653 244688999999999999999976311100000 0000001100 111122211
Q ss_pred hcCC------CCCCCHHHHHHHHHHH----hcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEe-cchhhhhh
Q 003086 239 LGDA------SAGDDRGELLRKINQY----LLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITT-RNGKVSQK 306 (849)
Q Consensus 239 l~~~------~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTt-r~~~v~~~ 306 (849)
-... ......+++.+.+... ..+++-++|+|++...+....+.+...+.+-+ ++.+|++| ....+...
T Consensus 99 ~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~t 178 (598)
T PRK09111 99 RHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVT 178 (598)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHH
Confidence 1110 0011233322222111 13455689999998877778888888887655 66665555 44444433
Q ss_pred ccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHH
Q 003086 307 MGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAV 367 (849)
Q Consensus 307 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 367 (849)
+.... ..+++.+++.++....+.+.+.... ...-.+....|++.++|.+.-+...
T Consensus 179 I~SRc-q~~~f~~l~~~el~~~L~~i~~keg-----i~i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 179 VLSRC-QRFDLRRIEADVLAAHLSRIAAKEG-----VEVEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred HHhhe-eEEEecCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 33333 6889999999999999988874322 1223467788999999998765443
No 113
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.21 E-value=1.1e-06 Score=68.13 Aligned_cols=57 Identities=32% Similarity=0.428 Sum_probs=32.6
Q ss_pred cceEEecCCccccccccccc-cccCCCCccceEeccCCCCCcccC-ccccCCCCCcEEeecccc
Q 003086 559 YLRVLDISRSIFELPLKGLL-SQTGSLQHLSYLCLSNTHPLIHLP-PSLKKLKNLQILDVSYCQ 620 (849)
Q Consensus 559 ~Lr~L~L~~~~~~~~~~~~p-~~~~~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~ 620 (849)
+|++|++++|.+. .+| ..|..+++|++|++++| .+..+| ..+..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~----~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLT----EIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTES----EECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCC----ccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4666666666655 333 35566666666666666 444444 345666666666666543
No 114
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.21 E-value=9.1e-05 Score=75.52 Aligned_cols=197 Identities=14% Similarity=0.106 Sum_probs=116.1
Q ss_pred cHHHHHHHHhccC-CCeEEEEEEcCCCCcHHHHHHHHhcChhhhc----ccCceEEEEeCCccCHHHHHHHHHHHhcCCC
Q 003086 169 DTRKIKDWLFEAE-EGILAIGVVGMGGLGKTTIAQKVFNDREIEN----WFERRMWVSVSQTFTEEQIMRSMLRNLGDAS 243 (849)
Q Consensus 169 ~~~~l~~~L~~~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 243 (849)
.++++.+++..+. ...+.+.|||.+|+|||++++++....-... .--.++.|.....++...+...|+.+++.+.
T Consensus 45 ~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 45 ALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred HHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 4556666666653 3567899999999999999999976421111 1114677778888999999999999999987
Q ss_pred C-CCCHHHHHHHHHHHhcC-ccEEEEEcCCCcc---CHHHHHHHHh---cCCCCC-CceEEEEecchhhhhhccc---cc
Q 003086 244 A-GDDRGELLRKINQYLLG-KRYLIVMDDVWGE---DLAWWRRIYE---GLPKGK-GSSIIITTRNGKVSQKMGV---KK 311 (849)
Q Consensus 244 ~-~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~---~~~~~~~l~~---~l~~~~-~s~ilvTtr~~~v~~~~~~---~~ 311 (849)
. .++...+.......++. +--+||+|++.+. .......+.. .|.+.- -+-|.+-|+..--+-..+. ..
T Consensus 125 ~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~R 204 (302)
T PF05621_consen 125 RPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASR 204 (302)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhc
Confidence 5 44555555555555543 3459999999761 1222223333 332222 4455666654222111111 11
Q ss_pred cccccCCCCChhhH-HHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHH
Q 003086 312 ARMHFPKFLSEDDS-WLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIK 365 (849)
Q Consensus 312 ~~~~~l~~L~~~e~-~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~ 365 (849)
..++.+.....++- ..|+......-.-.....-...++++.|...++|+.=-+.
T Consensus 205 F~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 205 FEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred cCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 24667777655444 4444332211111111122346789999999999875443
No 115
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.20 E-value=2.9e-05 Score=82.05 Aligned_cols=199 Identities=13% Similarity=0.105 Sum_probs=123.9
Q ss_pred CCCCccccccccHHHHHHHHhcc--CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHH
Q 003086 158 YDHTLVVGLEGDTRKIKDWLFEA--EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSM 235 (849)
Q Consensus 158 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 235 (849)
..+..++||+.++..+..++... ....+.+-|.|-+|.|||.+...++.+..-...=..++++.+..-.....++..|
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 34567999999999999998775 3356788899999999999999998863322222345777777656778888888
Q ss_pred HHHhcC-CCCCCCHHHHHHHHHHHhcCc--cEEEEEcCCCccCHHHHHHHHhc--CCCCCCceEEEEecchh-------h
Q 003086 236 LRNLGD-ASAGDDRGELLRKINQYLLGK--RYLIVMDDVWGEDLAWWRRIYEG--LPKGKGSSIIITTRNGK-------V 303 (849)
Q Consensus 236 ~~~l~~-~~~~~~~~~~~~~l~~~l~~~--~~LlVlDdv~~~~~~~~~~l~~~--l~~~~~s~ilvTtr~~~-------v 303 (849)
...+-. ...+.+..+.++.+.++..+. .+|+|+|..+......-..+... +|.-.++++|+.---.. +
T Consensus 227 ~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~L 306 (529)
T KOG2227|consen 227 FSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFL 306 (529)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHh
Confidence 888722 222223356666666666543 58999999865221112222222 23444677655442211 1
Q ss_pred ---hhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCch
Q 003086 304 ---SQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLP 361 (849)
Q Consensus 304 ---~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 361 (849)
....+.. +..+..+|.+.++..++|..+..... .........+.++++|.|.-
T Consensus 307 prL~~~~~~~-P~~l~F~PYTk~qI~~Il~~rl~~~~----t~~~~~~Aie~~ArKvaa~S 362 (529)
T KOG2227|consen 307 PRLNLDLTIK-PKLLVFPPYTKDQIVEILQQRLSEES----TSIFLNAAIELCARKVAAPS 362 (529)
T ss_pred hhhhhccCCC-CceeeecCCCHHHHHHHHHHHHhccc----ccccchHHHHHHHHHhccCc
Confidence 1111222 25777899999999999999974322 12223334455555554433
No 116
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=4.1e-05 Score=88.18 Aligned_cols=178 Identities=17% Similarity=0.104 Sum_probs=114.5
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChh---------------------hhcccCceEE
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDRE---------------------IENWFERRMW 219 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---------------------~~~~f~~~~w 219 (849)
.+++|.+..++.+..++..+. -...+.++|+.|+||||+|+.+...-. ...+|+. ..
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~ 94 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HE 94 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EE
Confidence 468999999999999887653 345678999999999999988765210 0112221 22
Q ss_pred EEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH----hcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceE
Q 003086 220 VSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQY----LLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSI 294 (849)
Q Consensus 220 v~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~i 294 (849)
+..+.... .+++.+.+.+. ..+++-++|+|++...+...++.+...+..-+ ++.+
T Consensus 95 ld~~~~~~--------------------vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tif 154 (614)
T PRK14971 95 LDAASNNS--------------------VDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIF 154 (614)
T ss_pred ecccccCC--------------------HHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEE
Confidence 22221111 22222222111 12455689999998877788999999888755 5665
Q ss_pred EE-EecchhhhhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHH
Q 003086 295 II-TTRNGKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKA 366 (849)
Q Consensus 295 lv-Ttr~~~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~ 366 (849)
|+ ||+...+...+.... ..+++.+++.++....+.+.+...+ ...-.+.+..|++.++|..--+..
T Consensus 155 IL~tt~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~eg-----i~i~~~al~~La~~s~gdlr~al~ 221 (614)
T PRK14971 155 ILATTEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEG-----ITAEPEALNVIAQKADGGMRDALS 221 (614)
T ss_pred EEEeCCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 55 445555554444333 6899999999999999988764322 122245678899999997764433
No 117
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=5.3e-05 Score=84.81 Aligned_cols=184 Identities=15% Similarity=0.077 Sum_probs=111.3
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChh---hh----------------cccCceEEEE
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDRE---IE----------------NWFERRMWVS 221 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~----------------~~f~~~~wv~ 221 (849)
.+++|-+.-.+.+..++..+. -...+.++|+.|+||||+|+.+...-. .. ..|..++++.
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eid 94 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEID 94 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEe
Confidence 368899999999988887653 235567899999999999999866210 00 0011122221
Q ss_pred eCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH-hcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEe-
Q 003086 222 VSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQY-LLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITT- 298 (849)
Q Consensus 222 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTt- 298 (849)
.+....+. +...+.+.+... ..+++-++|+|+++..+...++.+...+...+ ...+|++|
T Consensus 95 aas~~gvd-----------------~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt 157 (486)
T PRK14953 95 AASNRGID-----------------DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTT 157 (486)
T ss_pred CccCCCHH-----------------HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 11111110 111111111110 13566799999998766777888888887655 55555444
Q ss_pred cchhhhhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHh
Q 003086 299 RNGKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVG 368 (849)
Q Consensus 299 r~~~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~ 368 (849)
+...+........ ..+++.+++.++....+.+.+-..+ ...-.+.+..|++.++|.+..+....
T Consensus 158 ~~~kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~eg-----i~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 158 EYDKIPPTILSRC-QRFIFSKPTKEQIKEYLKRICNEEK-----IEYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred CHHHHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4444433322222 5788999999999999988764322 12235667789999999876554443
No 118
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.18 E-value=3.9e-05 Score=85.71 Aligned_cols=181 Identities=12% Similarity=0.024 Sum_probs=114.3
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhh--hcc----------------cCc-eEEEE
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREI--ENW----------------FER-RMWVS 221 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~--~~~----------------f~~-~~wv~ 221 (849)
.+++|-+.-.+.+...+..+. -..+..++|+.|+||||+|+.+.+.--- ... +.. ++.+.
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eld 92 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMD 92 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEec
Confidence 468998888888888887653 3456689999999999999987652100 000 111 11221
Q ss_pred eCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH----hcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEE
Q 003086 222 VSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQY----LLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIII 296 (849)
Q Consensus 222 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilv 296 (849)
.+... ..+++.+.+... ..+++-++|+|++...+.+..+.++..+..-+ .+.+|+
T Consensus 93 aas~~--------------------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL 152 (535)
T PRK08451 93 AASNR--------------------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFIL 152 (535)
T ss_pred ccccc--------------------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEE
Confidence 11111 123333322211 12456699999998877888888888887655 666666
Q ss_pred Eecc-hhhhhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHh
Q 003086 297 TTRN-GKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVG 368 (849)
Q Consensus 297 Ttr~-~~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~ 368 (849)
+|.+ ..+........ ..+++.+++.++....+.+.+...+ ...-++.++.|++.++|.+--+..+.
T Consensus 153 ~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EG-----i~i~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 153 ATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEG-----VSYEPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred EECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 6654 33333333332 6889999999999999988764322 12235677899999999996554443
No 119
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.18 E-value=3.6e-05 Score=88.41 Aligned_cols=187 Identities=15% Similarity=0.090 Sum_probs=111.5
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeC-------CccCHHHHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVS-------QTFTEEQIMR 233 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-------~~~~~~~~~~ 233 (849)
.+++|.+..++.+...+..+. -.+.+.++|+.|+||||+|+.++..---.... ..+-.|. ..+++.
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~--~~~~pC~~C~~~~~~~~Dvi---- 90 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKT--DLLEPCQECIENVNNSLDII---- 90 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccC--CCCCchhHHHHhhcCCCcEE----
Confidence 468899998888988887653 34567889999999999999986521000000 0000000 000000
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHh-----cCccEEEEEcCCCccCHHHHHHHHhcCCCCC-Cce-EEEEecchhhhhh
Q 003086 234 SMLRNLGDASAGDDRGELLRKINQYL-----LGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSS-IIITTRNGKVSQK 306 (849)
Q Consensus 234 ~i~~~l~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~-ilvTtr~~~v~~~ 306 (849)
.+... .....+++. .+.+.+ .+++-++|+|++.......+..+...+-..+ ... |++|++...+...
T Consensus 91 ----eidaa-sn~~vd~IR-eLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 91 ----EMDAA-SNNGVDEIR-ELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred ----EEecc-ccCCHHHHH-HHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 00000 001122221 222222 3566799999998877788888888887655 444 4555555555443
Q ss_pred ccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHH
Q 003086 307 MGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKA 366 (849)
Q Consensus 307 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~ 366 (849)
..... ..+++.+++.++....+...+...+ .....+.+..|++.++|.+--+..
T Consensus 165 I~SRc-q~ieF~~L~~eeI~~~L~~il~keg-----I~id~eAl~~LA~lS~GslR~Als 218 (725)
T PRK07133 165 ILSRV-QRFNFRRISEDEIVSRLEFILEKEN-----ISYEKNALKLIAKLSSGSLRDALS 218 (725)
T ss_pred HHhhc-eeEEccCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 33333 5889999999999999988763322 112245678899999997754433
No 120
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=2.6e-05 Score=90.06 Aligned_cols=193 Identities=17% Similarity=0.113 Sum_probs=115.3
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhc
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLG 240 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 240 (849)
.+++|-+.-++.|..++..+. -...+.++|+.|+||||+|+.+.+. +. |..+-.....+..-...+.|.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~--l~----c~~~~~~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKA--VN----CTTNDPKGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHH--hc----CCCCCCCCCCCccCHHHHHHhcCCC
Confidence 468999999999888887653 2356789999999999999998763 11 0000000001111122333322211
Q ss_pred CCC------CCCCHHHHHHHHHHHh-----cCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEecc-hhhhhhc
Q 003086 241 DAS------AGDDRGELLRKINQYL-----LGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITTRN-GKVSQKM 307 (849)
Q Consensus 241 ~~~------~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTtr~-~~v~~~~ 307 (849)
... .....+++.+ +.+.+ .+++-++|+|++...+.+..+.+...+.+.. .+.+|++|.. ..+....
T Consensus 89 ~d~~~i~~~~~~~vd~ir~-ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI 167 (585)
T PRK14950 89 VDVIEMDAASHTSVDDARE-IIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATI 167 (585)
T ss_pred CeEEEEeccccCCHHHHHH-HHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHH
Confidence 110 0112222222 22221 2456799999998766777888888877655 5666655543 3443333
Q ss_pred cccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHH
Q 003086 308 GVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAV 367 (849)
Q Consensus 308 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 367 (849)
.... ..+++.+++.++....+...+...+. ..-.+.+..|++.++|.+..+...
T Consensus 168 ~SR~-~~i~f~~l~~~el~~~L~~~a~~egl-----~i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 168 LSRC-QRFDFHRHSVADMAAHLRKIAAAEGI-----NLEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred Hhcc-ceeeCCCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2222 57888999999999998887743221 123567889999999999755444
No 121
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.16 E-value=1.3e-05 Score=82.99 Aligned_cols=158 Identities=13% Similarity=0.128 Sum_probs=84.8
Q ss_pred ccccccccHHHHHHHHhc-------------cCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCH
Q 003086 162 LVVGLEGDTRKIKDWLFE-------------AEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTE 228 (849)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~-------------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 228 (849)
.++|.+..+++|.+.... ..+....+.++|++|+||||+|+.+++.-.-...-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 478888877776543211 1224567889999999999999999763110011111223333321
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccC--------HHHHHHHHhcCCCCC-CceEEEEec
Q 003086 229 EQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGED--------LAWWRRIYEGLPKGK-GSSIIITTR 299 (849)
Q Consensus 229 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~-~s~ilvTtr 299 (849)
++.. . ..+.......+.+.+. . .-+|++|+++.-. .+..+.+...+.... ...+|+++.
T Consensus 84 -~l~~----~----~~g~~~~~~~~~~~~a-~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~ 151 (261)
T TIGR02881 84 -DLVG----E----YIGHTAQKTREVIKKA-L--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGY 151 (261)
T ss_pred -Hhhh----h----hccchHHHHHHHHHhc-c--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCC
Confidence 1111 1 1111222222223222 2 2489999997511 234455555555444 445566655
Q ss_pred chhhhh------hccccccccccCCCCChhhHHHHHHHHhh
Q 003086 300 NGKVSQ------KMGVKKARMHFPKFLSEDDSWLLFRKIAF 334 (849)
Q Consensus 300 ~~~v~~------~~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 334 (849)
..+... .........+++++++.++..+++.+.+.
T Consensus 152 ~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 152 SDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred cchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 433211 11111114678899999999999998874
No 122
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=3.8e-05 Score=87.88 Aligned_cols=200 Identities=16% Similarity=0.102 Sum_probs=113.6
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEE-eCCccCHHHHHHHHHHHh
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVS-VSQTFTEEQIMRSMLRNL 239 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~i~~~l 239 (849)
.+++|-+..++.+...+..+. -...+.++|+.|+||||+|+.+.+.-.-....+...|.. +...+..-...+.+...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 468999888888888887642 235588999999999999988865311101000000110 000000001111111100
Q ss_pred cCC-----C-CCCCHHHHHHHHHHH----hcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEE-Eecchhhhhhc
Q 003086 240 GDA-----S-AGDDRGELLRKINQY----LLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIII-TTRNGKVSQKM 307 (849)
Q Consensus 240 ~~~-----~-~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilv-Ttr~~~v~~~~ 307 (849)
... . .....+++.+.+... ..+.+-++|+|+++..+...++.+...+..-+ .+.+|+ |++...+...+
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI 174 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATI 174 (620)
T ss_pred CCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHH
Confidence 000 0 011233333322222 23456689999998876778888999887755 555554 44444444433
Q ss_pred cccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchh-HHHHH
Q 003086 308 GVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPL-AIKAV 367 (849)
Q Consensus 308 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PL-ai~~~ 367 (849)
.... ..+++.+++.++....+.+.+...+ ..-..+.++.|++.++|..- |+..+
T Consensus 175 ~SRc-~~vef~~l~~~ei~~~L~~i~~~eg-----i~I~~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 175 ASRC-QRFNFKRIPLDEIQSQLQMICRAEG-----IQIDADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred Hhhc-eEEecCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 3323 6899999999999888887663221 11235678889999999665 44433
No 123
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.16 E-value=1.7e-05 Score=94.95 Aligned_cols=183 Identities=14% Similarity=0.115 Sum_probs=100.9
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcc------cCceEE-EEeCCccCHHHHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENW------FERRMW-VSVSQTFTEEQIMR 233 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~------f~~~~w-v~~s~~~~~~~~~~ 233 (849)
.+++||+++++++++.|.... ..-+.++|.+|+||||+|+.+... +... .+..+| +.++.-
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~--i~~~~v~~~l~~~~i~~l~l~~l-------- 254 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALR--IAAGDVPPALRNVRLLSLDLGLL-------- 254 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHH--HhhCCCCccccCCeEEEeehhhh--------
Confidence 468999999999999998764 335679999999999999999873 2211 122232 222210
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHh-cCccEEEEEcCCCccC-----HHHHH---HHHhcCCCCCCceEEEEecchhhh
Q 003086 234 SMLRNLGDASAGDDRGELLRKINQYL-LGKRYLIVMDDVWGED-----LAWWR---RIYEGLPKGKGSSIIITTRNGKVS 304 (849)
Q Consensus 234 ~i~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~-----~~~~~---~l~~~l~~~~~s~ilvTtr~~~v~ 304 (849)
.. +....++-...+...+.+.- .+.+.+|++|+++.-. ...-+ .++..+.. ..-++|-||...+..
T Consensus 255 --~a--g~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~-G~l~~IgaTT~~e~~ 329 (852)
T TIGR03345 255 --QA--GASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR-GELRTIAATTWAEYK 329 (852)
T ss_pred --hc--ccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC-CCeEEEEecCHHHHh
Confidence 00 00000111122222222221 2468999999986521 01111 24444332 245677777654332
Q ss_pred hhccc-----cccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCch
Q 003086 305 QKMGV-----KKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLP 361 (849)
Q Consensus 305 ~~~~~-----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 361 (849)
..... .....+.+++++.+++.+++....-.... .......++....+++.+.+..
T Consensus 330 ~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~-~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 330 KYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEK-HHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred hhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhh-cCCCeeCHHHHHHHHHHccccc
Confidence 22111 12268999999999999998655422111 0112223556667777776554
No 124
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.13 E-value=2.1e-05 Score=84.41 Aligned_cols=148 Identities=16% Similarity=0.163 Sum_probs=86.9
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhc
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLG 240 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 240 (849)
.+++|.++..+.+.+++..+. -..++.++|++|+||||+|+.+++. ... ....++.+. .... ..+..+..+.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~--~~~---~~~~i~~~~-~~~~-~i~~~l~~~~ 92 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNE--VGA---EVLFVNGSD-CRID-FVRNRLTRFA 92 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHH--hCc---cceEeccCc-ccHH-HHHHHHHHHH
Confidence 568999999999999987643 3567777999999999999999873 211 233444443 1111 1111111110
Q ss_pred CCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCcc-CHHHHHHHHhcCCCCC-CceEEEEecchh-hhhhccccccccccC
Q 003086 241 DASAGDDRGELLRKINQYLLGKRYLIVMDDVWGE-DLAWWRRIYEGLPKGK-GSSIIITTRNGK-VSQKMGVKKARMHFP 317 (849)
Q Consensus 241 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~~-~s~ilvTtr~~~-v~~~~~~~~~~~~~l 317 (849)
.. . -+.+.+-+||+||+... .....+.+...+.... ++.+|+||.... +........ ..+.+
T Consensus 93 ~~------------~--~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~-~~i~~ 157 (316)
T PHA02544 93 ST------------V--SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC-RVIDF 157 (316)
T ss_pred Hh------------h--cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc-eEEEe
Confidence 00 0 01134568999999864 3344455555554433 778888886532 222222211 35666
Q ss_pred CCCChhhHHHHHHH
Q 003086 318 KFLSEDDSWLLFRK 331 (849)
Q Consensus 318 ~~L~~~e~~~lf~~ 331 (849)
...+.++..+++..
T Consensus 158 ~~p~~~~~~~il~~ 171 (316)
T PHA02544 158 GVPTKEEQIEMMKQ 171 (316)
T ss_pred CCCCHHHHHHHHHH
Confidence 77778777766554
No 125
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.11 E-value=1.4e-05 Score=86.30 Aligned_cols=121 Identities=19% Similarity=0.170 Sum_probs=79.9
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhc
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLG 240 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 240 (849)
.++++.++..+.+...|... +.|.++|++|+|||++|+.+++.......|+.+.||++++..+..+++..+.-. +
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~ 249 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-G 249 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-C
Confidence 45788889999999988864 468889999999999999998854344567888999999988877665433110 0
Q ss_pred CCCCCCCHHHHHHHHHHHh--cCccEEEEEcCCCccCHHH-HHHHHhcCC
Q 003086 241 DASAGDDRGELLRKINQYL--LGKRYLIVMDDVWGEDLAW-WRRIYEGLP 287 (849)
Q Consensus 241 ~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~~~~-~~~l~~~l~ 287 (849)
... ........+.+.+.. .+++++||+|++...+... +..+...+.
T Consensus 250 vgy-~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 250 VGF-RRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred CCe-EecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 000 001112222222222 2468999999998866443 555555443
No 126
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.10 E-value=3.2e-05 Score=84.70 Aligned_cols=179 Identities=15% Similarity=0.140 Sum_probs=99.8
Q ss_pred CCCCccccccccHHHHHHHHhcc-----------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCcc
Q 003086 158 YDHTLVVGLEGDTRKIKDWLFEA-----------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTF 226 (849)
Q Consensus 158 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 226 (849)
....++.|+++.++++.+.+..+ -...+-|.++|++|+|||++|+.+++. .... |+.++.
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~-- 198 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG-- 198 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh--
Confidence 34457899999999998876431 123567899999999999999999873 2222 333321
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCcc-----------CHHHHHHHHhcCCC------C
Q 003086 227 TEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGE-----------DLAWWRRIYEGLPK------G 289 (849)
Q Consensus 227 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------~~~~~~~l~~~l~~------~ 289 (849)
.++. ... .+.....+...+...-...+.+|+|||++.. +...+..+...+.. .
T Consensus 199 --~~l~----~~~----~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 199 --SELV----QKF----IGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred --HHHh----Hhh----ccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 1111 111 1111112222222222346789999999651 12223333333321 1
Q ss_pred CCceEEEEecchhhhh-hccc--cccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCch
Q 003086 290 KGSSIIITTRNGKVSQ-KMGV--KKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLP 361 (849)
Q Consensus 290 ~~s~ilvTtr~~~v~~-~~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 361 (849)
.+..||.||...+... .+-. .....+++.+.+.++..++|+.+.....-. ...+ ...+++.+.|.-
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~--~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA--DDVD----LEELAELTEGAS 337 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC--CcCC----HHHHHHHcCCCC
Confidence 2556777776543222 1111 111478899999999999999886432211 1112 345667776654
No 127
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=2e-07 Score=91.87 Aligned_cols=86 Identities=22% Similarity=0.268 Sum_probs=55.7
Q ss_pred cceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCC--hhhhcccCCc
Q 003086 559 YLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLP--SYVQSFIQLR 636 (849)
Q Consensus 559 ~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp--~~i~~l~~L~ 636 (849)
.|+.|||++..++. ..+-.-+..+.+|+.|+|.++..-..+-..|.+-.+|+.|||+.|+.++... --+.+++.|.
T Consensus 186 Rlq~lDLS~s~it~--stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITV--STLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeH--HHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 57888888877753 1222334567778888888774334444556677778888888777555432 2345677777
Q ss_pred EeeccCCCCc
Q 003086 637 ALDVTHCGSL 646 (849)
Q Consensus 637 ~L~l~~~~~~ 646 (849)
.|+++.|...
T Consensus 264 ~LNlsWc~l~ 273 (419)
T KOG2120|consen 264 ELNLSWCFLF 273 (419)
T ss_pred hcCchHhhcc
Confidence 7777777654
No 128
>CHL00181 cbbX CbbX; Provisional
Probab=98.06 E-value=6.8e-05 Score=78.19 Aligned_cols=159 Identities=11% Similarity=0.111 Sum_probs=87.3
Q ss_pred ccccccccHHHHHHHH---hcc----------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCH
Q 003086 162 LVVGLEGDTRKIKDWL---FEA----------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTE 228 (849)
Q Consensus 162 ~~vGr~~~~~~l~~~L---~~~----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 228 (849)
+++|.+.-+++|.++. .-. ......+.++|++|+||||+|+.+++.......-....|+.++.
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~---- 99 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR---- 99 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----
Confidence 4677776666554442 111 11234588999999999999999976311111111122555552
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCcc---------CHHHHHHHHhcCCCCC-CceEEEEe
Q 003086 229 EQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGE---------DLAWWRRIYEGLPKGK-GSSIIITT 298 (849)
Q Consensus 229 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~-~s~ilvTt 298 (849)
.++ ...+.+. +.......+.+. . .-+|+||++..- ..+..+.+...+.+.. +..||+++
T Consensus 100 ~~l----~~~~~g~----~~~~~~~~l~~a-~--ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag 168 (287)
T CHL00181 100 DDL----VGQYIGH----TAPKTKEVLKKA-M--GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAG 168 (287)
T ss_pred HHH----HHHHhcc----chHHHHHHHHHc-c--CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 122 2222111 112222222222 2 249999999641 2344555666665554 66777777
Q ss_pred cchhhhhhc------cccccccccCCCCChhhHHHHHHHHhhc
Q 003086 299 RNGKVSQKM------GVKKARMHFPKFLSEDDSWLLFRKIAFA 335 (849)
Q Consensus 299 r~~~v~~~~------~~~~~~~~~l~~L~~~e~~~lf~~~~~~ 335 (849)
....+.... .......+++++++.+|..+++...+..
T Consensus 169 ~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 169 YKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred CcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH
Confidence 654432211 1111247889999999999999988743
No 129
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=0.00012 Score=83.84 Aligned_cols=191 Identities=16% Similarity=0.049 Sum_probs=112.2
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhc
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLG 240 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 240 (849)
.+++|.+...+.+..++..+. -.+.+.++|+.|+||||+|+.+.+.-.-...-+ ..+++.-...+.|.....
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAITNGSL 87 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHhcCCC
Confidence 468999999999999888753 345677899999999999998865210000000 000010011111111100
Q ss_pred CCC------CCCCHHHHHHHHHHH----hcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEE-EEecchhhhhhcc
Q 003086 241 DAS------AGDDRGELLRKINQY----LLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSII-ITTRNGKVSQKMG 308 (849)
Q Consensus 241 ~~~------~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~il-vTtr~~~v~~~~~ 308 (849)
... .....+++.+.+.+. ..+++-++|+|++.......+..+...+...+ ...+| .||....+...+.
T Consensus 88 ~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~ 167 (559)
T PRK05563 88 MDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATIL 167 (559)
T ss_pred CCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHH
Confidence 000 011222222221111 13566799999998877788888888887655 44444 4555444443333
Q ss_pred ccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHH
Q 003086 309 VKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIK 365 (849)
Q Consensus 309 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~ 365 (849)
... ..++..+++.++....+...+...+ ...-.+....|++.++|.+..+.
T Consensus 168 SRc-~~~~f~~~~~~ei~~~L~~i~~~eg-----i~i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 168 SRC-QRFDFKRISVEDIVERLKYILDKEG-----IEYEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred hHh-eEEecCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHH
Confidence 222 5788899999999999988774221 12225667889999999886544
No 130
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=9e-05 Score=82.43 Aligned_cols=178 Identities=13% Similarity=0.057 Sum_probs=108.2
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhh---------------------cccCceEE
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIE---------------------NWFERRMW 219 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---------------------~~f~~~~w 219 (849)
.+++|.+..++.+..++..+. -...+.++|+.|+||||+|+.+.+.-.-. .+++ .++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~ 94 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLE 94 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEE
Confidence 468999999999888887643 23567889999999999999886521000 0111 111
Q ss_pred EEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH-HhcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEE
Q 003086 220 VSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQ-YLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIIT 297 (849)
Q Consensus 220 v~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvT 297 (849)
+.-......++ ..++.+.+.. -..+.+-++|+|++........+.+...+.+.+ ...+|++
T Consensus 95 i~g~~~~gid~-----------------ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~ 157 (451)
T PRK06305 95 IDGASHRGIED-----------------IRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLA 157 (451)
T ss_pred eeccccCCHHH-----------------HHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEE
Confidence 11110111111 1111111111 013567789999998766667778888887655 6666666
Q ss_pred ec-chhhhhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhH
Q 003086 298 TR-NGKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLA 363 (849)
Q Consensus 298 tr-~~~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLa 363 (849)
|. ...+...+.... ..+++.++++++....+.+.+-..+ .....+.++.|++.++|.+--
T Consensus 158 t~~~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg-----~~i~~~al~~L~~~s~gdlr~ 218 (451)
T PRK06305 158 TTEIHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQEG-----IETSREALLPIARAAQGSLRD 218 (451)
T ss_pred eCChHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHH
Confidence 53 333333332222 5789999999999998888763221 122356778899999997643
No 131
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=9.7e-05 Score=84.06 Aligned_cols=192 Identities=13% Similarity=0.062 Sum_probs=114.8
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHH--
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRN-- 238 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~-- 238 (849)
.+++|-+..++.+..++..+. -.+.+.++|+.|+||||+|+.+.+.---..... ...+....+- +.|...
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~---~~pC~~C~~C----~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPT---PMPCGECSSC----KSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCC---CCCCccchHH----HHHHcCCC
Confidence 468999999999999887653 345688999999999999999977311000000 0001111000 111100
Q ss_pred -----hcCCCCCCCHHHHHHHHHH----HhcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEec-chhhhhhc
Q 003086 239 -----LGDASAGDDRGELLRKINQ----YLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITTR-NGKVSQKM 307 (849)
Q Consensus 239 -----l~~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTtr-~~~v~~~~ 307 (849)
+.+.. ....+++.+.... -..+++-++|+|++...+...++.+...+...+ ...+|++|. ...+...+
T Consensus 88 ~dv~~idgas-~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI 166 (563)
T PRK06647 88 LDVIEIDGAS-NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATI 166 (563)
T ss_pred CCeEEecCcc-cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHH
Confidence 00000 0122333222211 123566789999998877788888988887655 566655553 34444333
Q ss_pred cccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHH
Q 003086 308 GVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAV 367 (849)
Q Consensus 308 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 367 (849)
.... ..+++.+++.++....+.+.+...+ .+--++.+..|++.++|.+-.+..+
T Consensus 167 ~SRc-~~~~f~~l~~~el~~~L~~i~~~eg-----i~id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 167 KSRC-QHFNFRLLSLEKIYNMLKKVCLEDQ-----IKYEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HHhc-eEEEecCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3222 5688999999999999988774322 1223567788999999988654443
No 132
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.05 E-value=6e-06 Score=64.00 Aligned_cols=60 Identities=33% Similarity=0.461 Sum_probs=50.7
Q ss_pred CccceEeccCCCCCcccCc-cccCCCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCC
Q 003086 585 QHLSYLCLSNTHPLIHLPP-SLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGS 645 (849)
Q Consensus 585 ~~Lr~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~ 645 (849)
++|++|++++| .+..+|. .+..+++|++|++++|.....-|..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 47899999999 8888885 678899999999997776666667889999999999999864
No 133
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.04 E-value=1.6e-05 Score=84.39 Aligned_cols=89 Identities=17% Similarity=0.126 Sum_probs=62.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCc--cCHHHHHHHHHHHhcCCCCCCCHH---HH----HHH
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQT--FTEEQIMRSMLRNLGDASAGDDRG---EL----LRK 254 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~---~~----~~~ 254 (849)
-..++|+|++|+|||||++.+++... .++|+..+||.+.+. .++.++++.++..+-....+.+.. .+ .+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAIT-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhc-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 35689999999999999999998633 337999999999866 789999999965443332221111 11 111
Q ss_pred HHHH-hcCccEEEEEcCCCc
Q 003086 255 INQY-LLGKRYLIVMDDVWG 273 (849)
Q Consensus 255 l~~~-l~~~~~LlVlDdv~~ 273 (849)
.... -.+++++|++|++..
T Consensus 247 Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHcCCCeEEEEEChhH
Confidence 2222 268999999999976
No 134
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.04 E-value=4.7e-05 Score=79.46 Aligned_cols=158 Identities=12% Similarity=0.116 Sum_probs=85.8
Q ss_pred ccccccccHHHHHHHHh---cc----------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCH
Q 003086 162 LVVGLEGDTRKIKDWLF---EA----------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTE 228 (849)
Q Consensus 162 ~~vGr~~~~~~l~~~L~---~~----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 228 (849)
.++|.++.+++|.++.. .. ......+.++|++|+||||+|+.+..............|+.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~---- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR---- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----
Confidence 36677766666544321 10 11223688999999999999987765211111111123555442
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCcc---------CHHHHHHHHhcCCCCC-CceEEEEe
Q 003086 229 EQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGE---------DLAWWRRIYEGLPKGK-GSSIIITT 298 (849)
Q Consensus 229 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~-~s~ilvTt 298 (849)
.+ ++..+.+ .+.......+.+. ..-+|+||++..- ..+.++.+...+.... +.+||+++
T Consensus 99 ~~----l~~~~~g----~~~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~ 167 (284)
T TIGR02880 99 DD----LVGQYIG----HTAPKTKEILKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAG 167 (284)
T ss_pred HH----HhHhhcc----cchHHHHHHHHHc---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 12 2222221 1122222223322 2358999999631 1344566666666555 66777776
Q ss_pred cchhhhhhccc------cccccccCCCCChhhHHHHHHHHhh
Q 003086 299 RNGKVSQKMGV------KKARMHFPKFLSEDDSWLLFRKIAF 334 (849)
Q Consensus 299 r~~~v~~~~~~------~~~~~~~l~~L~~~e~~~lf~~~~~ 334 (849)
........... .....+++++++.+|..+++.+.+-
T Consensus 168 ~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 168 YKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLK 209 (284)
T ss_pred CcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHH
Confidence 54322221111 1114688999999999999998873
No 135
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=9.9e-05 Score=85.00 Aligned_cols=196 Identities=12% Similarity=0.060 Sum_probs=115.5
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhc
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLG 240 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 240 (849)
.+++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+++.-.-. ..+... ...+..-...+.+.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~~----~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKPT----PEPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCCC----CCCCcccHHHHHHhcCCC
Confidence 468899999999988888653 23567899999999999999997731110 000000 011111122222222211
Q ss_pred CC------CCCCCHHHHHHHHHHH----hcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEE-Eecchhhhhhcc
Q 003086 241 DA------SAGDDRGELLRKINQY----LLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIII-TTRNGKVSQKMG 308 (849)
Q Consensus 241 ~~------~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilv-Ttr~~~v~~~~~ 308 (849)
.. ......+++.+.+... ..+++-++|+|+++......++.+...+..-. ...+|+ |+....+...+.
T Consensus 90 ~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIr 169 (620)
T PRK14948 90 LDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTII 169 (620)
T ss_pred ccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHH
Confidence 10 0112233333322211 13456699999999877788888988887655 555454 444444433333
Q ss_pred ccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHh
Q 003086 309 VKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVG 368 (849)
Q Consensus 309 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~ 368 (849)
... ..+++.+++.++....+.+.+..... ..-.+.+..|++.++|.+..+..+.
T Consensus 170 SRc-~~~~f~~l~~~ei~~~L~~ia~kegi-----~is~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 170 SRC-QRFDFRRIPLEAMVQHLSEIAEKESI-----EIEPEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred hhe-eEEEecCCCHHHHHHHHHHHHHHhCC-----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 222 57788899999988888877643211 1224567889999999886554443
No 136
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.04 E-value=3.1e-05 Score=77.50 Aligned_cols=190 Identities=15% Similarity=0.044 Sum_probs=117.7
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceE-EEEeCCccCHHHHHHHHHHHh
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRM-WVSVSQTFTEEQIMRSMLRNL 239 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~-wv~~s~~~~~~~~~~~i~~~l 239 (849)
.+++|-+..++.+...+... ...+...+|++|.|||+-|+.+...---.+-|.+++ =.++|...... +.+.=
T Consensus 36 de~~gQe~vV~~L~~a~~~~--~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~K---- 108 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRR--ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVREK---- 108 (346)
T ss_pred HhhcchHHHHHHHHHHHhhc--CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhhh----
Confidence 46889888888888888773 477889999999999999988876321234454433 23344322111 00000
Q ss_pred cCCCCCCCHHHHHHHHHHHh--cCcc-EEEEEcCCCccCHHHHHHHHhcCCCCC-Cce-EEEEecchhhhhhcccccccc
Q 003086 240 GDASAGDDRGELLRKINQYL--LGKR-YLIVMDDVWGEDLAWWRRIYEGLPKGK-GSS-IIITTRNGKVSQKMGVKKARM 314 (849)
Q Consensus 240 ~~~~~~~~~~~~~~~l~~~l--~~~~-~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~-ilvTtr~~~v~~~~~~~~~~~ 314 (849)
..+.+.+........ .-++ -++|||+++....+.|..++..+.+-. .++ |+||+--..+...+.... ..
T Consensus 109 -----ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC-~K 182 (346)
T KOG0989|consen 109 -----IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRC-QK 182 (346)
T ss_pred -----hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhH-HH
Confidence 001111111110000 0122 489999999988999999999887744 555 456655444444443333 57
Q ss_pred ccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHh
Q 003086 315 HFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVG 368 (849)
Q Consensus 315 ~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~ 368 (849)
+..++|.+++...-++..+-..+ ..-..+..+.|++.++|----+..+-
T Consensus 183 frFk~L~d~~iv~rL~~Ia~~E~-----v~~d~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 183 FRFKKLKDEDIVDRLEKIASKEG-----VDIDDDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred hcCCCcchHHHHHHHHHHHHHhC-----CCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 88899999999999988884333 23345677889999988665444433
No 137
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.02 E-value=2.8e-05 Score=93.60 Aligned_cols=158 Identities=15% Similarity=0.168 Sum_probs=88.7
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChh---hhccc-CceEEEEeCCccCHHHHHHHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDRE---IENWF-ERRMWVSVSQTFTEEQIMRSML 236 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~~~f-~~~~wv~~s~~~~~~~~~~~i~ 236 (849)
..++||+++++++++.|.... ..-+.++|++|+|||++|+.++.... +.... +..+|. + +...++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~---- 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL---- 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh----
Confidence 358999999999999998754 33457999999999999999977311 11111 234443 2 111111
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCcc--------CHHHHHHHHhcCCCCCCceEEEEecchhhhhh--
Q 003086 237 RNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGE--------DLAWWRRIYEGLPKGKGSSIIITTRNGKVSQK-- 306 (849)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~s~ilvTtr~~~v~~~-- 306 (849)
. +....++-...+...+.+.-..++.+|++|+++.- +...-+.++..+..+ .-++|.+|...+....
T Consensus 248 a--g~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~ey~~~ie 324 (821)
T CHL00095 248 A--GTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLDEYRKHIE 324 (821)
T ss_pred c--cCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHHHHHHHHh
Confidence 1 11111211222222232222456899999999530 111223344444333 3455666655443221
Q ss_pred ----ccccccccccCCCCChhhHHHHHHHHh
Q 003086 307 ----MGVKKARMHFPKFLSEDDSWLLFRKIA 333 (849)
Q Consensus 307 ----~~~~~~~~~~l~~L~~~e~~~lf~~~~ 333 (849)
+.. ....+++...+.++..+++....
T Consensus 325 ~D~aL~r-Rf~~I~v~ep~~~e~~aILr~l~ 354 (821)
T CHL00095 325 KDPALER-RFQPVYVGEPSVEETIEILFGLR 354 (821)
T ss_pred cCHHHHh-cceEEecCCCCHHHHHHHHHHHH
Confidence 112 12567888899999988887653
No 138
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.01 E-value=0.00017 Score=76.18 Aligned_cols=196 Identities=15% Similarity=0.126 Sum_probs=116.3
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcCh---h---------h-hcccCceEEEEeCCccC
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDR---E---------I-ENWFERRMWVSVSQTFT 227 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~---~---------~-~~~f~~~~wv~~s~~~~ 227 (849)
.+++|.+..++.+.+.+..+. -.....++|+.|+||+++|..+.+.- . + ...++-..|+.-....+
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 358899999999988887753 24688999999999999997775421 0 0 11222334543210000
Q ss_pred HHHHHHHHHHHhcC--CCC-CCCHHHHHHHHHHHh-----cCccEEEEEcCCCccCHHHHHHHHhcCCCCCCceE-EEEe
Q 003086 228 EEQIMRSMLRNLGD--ASA-GDDRGELLRKINQYL-----LGKRYLIVMDDVWGEDLAWWRRIYEGLPKGKGSSI-IITT 298 (849)
Q Consensus 228 ~~~~~~~i~~~l~~--~~~-~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~s~i-lvTt 298 (849)
-..+...-+...+. ... .-..++. +.+.+.+ .+.+-++|+|++...+......++..+-.-+.+.+ ++|+
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~ 161 (314)
T PRK07399 83 GKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAP 161 (314)
T ss_pred ccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEEC
Confidence 00011111111110 000 1122332 2334433 35677999999988777888888888755443444 5555
Q ss_pred cchhhhhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHH
Q 003086 299 RNGKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAV 367 (849)
Q Consensus 299 r~~~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 367 (849)
....+...+.... ..+++.+++.++..+.+.+..... ........++..++|.|..+..+
T Consensus 162 ~~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~~~~--------~~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 162 SPESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLGDEE--------ILNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred ChHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhhccc--------cchhHHHHHHHHcCCCHHHHHHH
Confidence 5555555554444 789999999999999999875211 11112357889999999766543
No 139
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.00 E-value=0.00033 Score=77.74 Aligned_cols=158 Identities=15% Similarity=0.130 Sum_probs=93.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhccc--CceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcC
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWF--ERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLG 261 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 261 (849)
...+.|+|.+|+|||+|++.+++. ..... ..++++++ .++...+...+... .... +.+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~----~~~~----~~~~~~~ 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSS------EKFTNDFVNALRNN----KMEE----FKEKYRS 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEH------HHHHHHHHHHHHcC----CHHH----HHHHHHh
Confidence 456899999999999999999984 33332 23556643 34455555555321 2222 2333322
Q ss_pred ccEEEEEcCCCccC-H-HHHHHHHhcCCC--CCCceEEEEecch--hh-------hhhccccccccccCCCCChhhHHHH
Q 003086 262 KRYLIVMDDVWGED-L-AWWRRIYEGLPK--GKGSSIIITTRNG--KV-------SQKMGVKKARMHFPKFLSEDDSWLL 328 (849)
Q Consensus 262 ~~~LlVlDdv~~~~-~-~~~~~l~~~l~~--~~~s~ilvTtr~~--~v-------~~~~~~~~~~~~~l~~L~~~e~~~l 328 (849)
.-+|||||+.... . ...+.+...+.. ..+..+|+|+... .+ ...+... ..+++++.+.++..++
T Consensus 200 -~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g--~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 200 -VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWG--LVVDIEPPDLETRLAI 276 (405)
T ss_pred -CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCC--eEEEeCCCCHHHHHHH
Confidence 3489999997521 1 112223333322 2356688887641 11 1112111 3688999999999999
Q ss_pred HHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHH
Q 003086 329 FRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIK 365 (849)
Q Consensus 329 f~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~ 365 (849)
+.+.+.... ..-.+++...|++.+.|.+-.+.
T Consensus 277 l~~~~~~~~-----~~l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 277 LQKKAEEEG-----LELPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHcC-----CCCCHHHHHHHHHhcCCCHHHHH
Confidence 999985421 22336778889999888776433
No 140
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.00 E-value=0.00011 Score=82.58 Aligned_cols=179 Identities=12% Similarity=0.079 Sum_probs=102.4
Q ss_pred ccccccc--HHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhccc--CceEEEEeCCccCHHHHHHHHHHH
Q 003086 163 VVGLEGD--TRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWF--ERRMWVSVSQTFTEEQIMRSMLRN 238 (849)
Q Consensus 163 ~vGr~~~--~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~i~~~ 238 (849)
++|.... ......+...++.....+.|+|.+|+|||+|++.+.+. ....+ ..+++++.. ++..++...
T Consensus 125 v~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~~------~~~~~~~~~ 196 (450)
T PRK00149 125 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTSE------KFTNDFVNA 196 (450)
T ss_pred ccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEHH------HHHHHHHHH
Confidence 4564443 22233333333333456899999999999999999984 43433 224566443 344444444
Q ss_pred hcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccC--HHHHHHHHhcCCC--CCCceEEEEecch--h-------hhh
Q 003086 239 LGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGED--LAWWRRIYEGLPK--GKGSSIIITTRNG--K-------VSQ 305 (849)
Q Consensus 239 l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~~~l~~~l~~--~~~s~ilvTtr~~--~-------v~~ 305 (849)
+... .. ..+.+.+. +.-+|||||+.... ....+.+...+.. ..|..||+||... . +..
T Consensus 197 ~~~~----~~----~~~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S 267 (450)
T PRK00149 197 LRNN----TM----EEFKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS 267 (450)
T ss_pred HHcC----cH----HHHHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 4321 22 22333333 24489999996521 1112233332221 2255688887642 1 122
Q ss_pred hccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHH
Q 003086 306 KMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIK 365 (849)
Q Consensus 306 ~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~ 365 (849)
.+... ..+++++.+.++..+++.+.+... ...-.+++...|++.+.|..-.+.
T Consensus 268 Rl~~g--l~v~i~~pd~~~r~~il~~~~~~~-----~~~l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 268 RFEWG--LTVDIEPPDLETRIAILKKKAEEE-----GIDLPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HhcCC--eeEEecCCCHHHHHHHHHHHHHHc-----CCCCCHHHHHHHHcCcCCCHHHHH
Confidence 22221 478899999999999999998432 122346778889999988876543
No 141
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.00 E-value=4.7e-05 Score=90.60 Aligned_cols=157 Identities=13% Similarity=0.151 Sum_probs=89.9
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChh---hhccc-CceEEEEeCCccCHHHHHHHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDRE---IENWF-ERRMWVSVSQTFTEEQIMRSML 236 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~~~f-~~~~wv~~s~~~~~~~~~~~i~ 236 (849)
++++||+++++++++.|.... ..-+.++|++|+|||++|+.+++... +...+ +..+|. ++ ...+.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~~----~~~l~---- 250 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-LD----MGSLL---- 250 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-ec----HHHHh----
Confidence 368999999999999997764 33567999999999999999987311 11111 233432 11 11111
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHh-cCccEEEEEcCCCcc---------CHHHHHHHHhcCCCCCCceEEEEecchhhhh-
Q 003086 237 RNLGDASAGDDRGELLRKINQYL-LGKRYLIVMDDVWGE---------DLAWWRRIYEGLPKGKGSSIIITTRNGKVSQ- 305 (849)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~s~ilvTtr~~~v~~- 305 (849)
.. ....+ +.++....+.+.+ ..++.+|++|+++.- +.+.-+.++..+..+ .-++|-+|...+...
T Consensus 251 a~--~~~~g-~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g-~i~~IgaTt~~e~~~~ 326 (731)
T TIGR02639 251 AG--TKYRG-DFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG-KLRCIGSTTYEEYKNH 326 (731)
T ss_pred hh--ccccc-hHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC-CeEEEEecCHHHHHHH
Confidence 00 00011 2222233333333 346789999999741 122334455555433 344555555433211
Q ss_pred -----hccccccccccCCCCChhhHHHHHHHHh
Q 003086 306 -----KMGVKKARMHFPKFLSEDDSWLLFRKIA 333 (849)
Q Consensus 306 -----~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 333 (849)
.... ....+++++++.++..+++....
T Consensus 327 ~~~d~al~r-Rf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 327 FEKDRALSR-RFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred hhhhHHHHH-hCceEEeCCCCHHHHHHHHHHHH
Confidence 1111 12578899999999999999765
No 142
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.98 E-value=1.5e-06 Score=96.62 Aligned_cols=105 Identities=24% Similarity=0.195 Sum_probs=57.7
Q ss_pred hhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcc
Q 003086 553 KFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSF 632 (849)
Q Consensus 553 ~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l 632 (849)
.+..++.|..|++.+|.+. .+...+..+++|++|+|++| .|..+.. +..+..|+.|++++|.+. .++ .+..+
T Consensus 90 ~l~~~~~l~~l~l~~n~i~----~i~~~l~~~~~L~~L~ls~N-~I~~i~~-l~~l~~L~~L~l~~N~i~-~~~-~~~~l 161 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIE----KIENLLSSLVNLQVLDLSFN-KITKLEG-LSTLTLLKELNLSGNLIS-DIS-GLESL 161 (414)
T ss_pred ccccccceeeeeccccchh----hcccchhhhhcchheecccc-ccccccc-hhhccchhhheeccCcch-hcc-CCccc
Confidence 3556666777777777664 23322566667777777776 5665543 566666666666655422 222 23346
Q ss_pred cCCcEeeccCCCCccccCcc-ccccccccccCccc
Q 003086 633 IQLRALDVTHCGSLQYLPKG-FGKLLNLEVLLGFR 666 (849)
Q Consensus 633 ~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~~~~ 666 (849)
++|+.+++++|.+....+ . ...+.+|+.+.+..
T Consensus 162 ~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~ 195 (414)
T KOG0531|consen 162 KSLKLLDLSYNRIVDIEN-DELSELISLEELDLGG 195 (414)
T ss_pred hhhhcccCCcchhhhhhh-hhhhhccchHHHhccC
Confidence 666666666666542222 1 24455555554433
No 143
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.98 E-value=0.00026 Score=75.12 Aligned_cols=97 Identities=11% Similarity=0.151 Sum_probs=68.6
Q ss_pred CccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEecch-hhhhhccccccccccCCCCChhhHHHHHHHHhhccCC
Q 003086 261 GKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITTRNG-KVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATE 338 (849)
Q Consensus 261 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTtr~~-~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~ 338 (849)
+++-++|+|+++..+....+.+...+..-+ ++.+|+||.+. .+...+.... ..+.+.+++.+++.+.+.+....
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc-~~~~~~~~~~~~~~~~L~~~~~~--- 180 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRC-QQQACPLPSNEESLQWLQQALPE--- 180 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHhccc---
Confidence 445566789999888888999998887655 67777776653 4444433333 67899999999999998765310
Q ss_pred CCCCCCchhHHHHHHHHhcCCchhHHHHH
Q 003086 339 GECQHPSLEGVGKEIVEKCKGLPLAIKAV 367 (849)
Q Consensus 339 ~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 367 (849)
...+.+..++..++|.|..+..+
T Consensus 181 ------~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 ------SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ------CChHHHHHHHHHcCCCHHHHHHH
Confidence 11344567889999999866554
No 144
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.97 E-value=0.00014 Score=80.81 Aligned_cols=158 Identities=16% Similarity=0.167 Sum_probs=94.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcc-cC-ceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcC
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENW-FE-RRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLG 261 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-f~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 261 (849)
...+.|+|.+|+|||+||+.+++. .... .. .++|++. .++..++...+... +.++ +++....
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~----~~~~----f~~~~~~ 193 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG----KLNE----FREKYRK 193 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc----cHHH----HHHHHHh
Confidence 445899999999999999999984 3333 23 3566653 45666666655321 2222 3333333
Q ss_pred ccEEEEEcCCCcc-CHHHH-HHHHhcCCC--CCCceEEEEec-chh----h----hhhccccccccccCCCCChhhHHHH
Q 003086 262 KRYLIVMDDVWGE-DLAWW-RRIYEGLPK--GKGSSIIITTR-NGK----V----SQKMGVKKARMHFPKFLSEDDSWLL 328 (849)
Q Consensus 262 ~~~LlVlDdv~~~-~~~~~-~~l~~~l~~--~~~s~ilvTtr-~~~----v----~~~~~~~~~~~~~l~~L~~~e~~~l 328 (849)
+.-+|++||+... +...+ +.+...+.. ..|..||+||. ... + ...+... ..+++++.+.+.-.++
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~g--l~v~i~~pd~e~r~~I 271 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMG--LVAKLEPPDEETRKKI 271 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcC--ceEeeCCCCHHHHHHH
Confidence 4568999999752 11111 223222221 22557888885 221 1 1112211 3778999999999999
Q ss_pred HHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHH
Q 003086 329 FRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAI 364 (849)
Q Consensus 329 f~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 364 (849)
+.+.+... ...-.+++...|++.+.|.--.+
T Consensus 272 L~~~~~~~-----~~~l~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 272 ARKMLEIE-----HGELPEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHHHhc-----CCCCCHHHHHHHHhccccCHHHH
Confidence 99987432 12233677888888888765443
No 145
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00015 Score=83.41 Aligned_cols=195 Identities=12% Similarity=0.074 Sum_probs=113.2
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhc
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLG 240 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 240 (849)
.+++|.+.-++.|...+..+. -...+.++|+.|+||||+|+.+.+.-.-....+. ..+..-.....|...-.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEITEGRS 87 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHhcCCC
Confidence 468999988889988887653 2356689999999999999988663110000000 00000001111110000
Q ss_pred CC------CCCCCHHHHHHHHHHHh-----cCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEE-EEecchhhhhhc
Q 003086 241 DA------SAGDDRGELLRKINQYL-----LGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSII-ITTRNGKVSQKM 307 (849)
Q Consensus 241 ~~------~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~il-vTtr~~~v~~~~ 307 (849)
.. ......+++. .+.+.+ .+++-++|+|+++..+...++.+...+..-+ .+.+| +||....+...+
T Consensus 88 ~d~~eid~~s~~~v~~ir-~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI 166 (576)
T PRK14965 88 VDVFEIDGASNTGVDDIR-ELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITI 166 (576)
T ss_pred CCeeeeeccCccCHHHHH-HHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHH
Confidence 00 0001122221 122211 3455689999998877788888988887655 55555 455555555444
Q ss_pred cccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchh-HHHHHhhh
Q 003086 308 GVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPL-AIKAVGGM 370 (849)
Q Consensus 308 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PL-ai~~~~~~ 370 (849)
.... ..+++.+++.++....+...+...+ ..--.+....|++.++|..- |+..+-..
T Consensus 167 ~SRc-~~~~f~~l~~~~i~~~L~~i~~~eg-----i~i~~~al~~la~~a~G~lr~al~~Ldql 224 (576)
T PRK14965 167 LSRC-QRFDFRRIPLQKIVDRLRYIADQEG-----ISISDAALALVARKGDGSMRDSLSTLDQV 224 (576)
T ss_pred HHhh-hhhhcCCCCHHHHHHHHHHHHHHhC-----CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3333 6788999999999888887663221 12235667889999999764 44444333
No 146
>PRK06620 hypothetical protein; Validated
Probab=97.97 E-value=0.00018 Score=71.64 Aligned_cols=136 Identities=12% Similarity=0.055 Sum_probs=80.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccE
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRY 264 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 264 (849)
+.+.|+|++|+|||+|++.+++... . .++. ..+. . . +.. ...-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~-------------------~-~-------~~~-~~~d 87 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFF-------------------N-E-------EIL-EKYN 87 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhh-------------------c-h-------hHH-hcCC
Confidence 6789999999999999998877421 1 1221 0000 0 0 011 1235
Q ss_pred EEEEcCCCccCHHHHHHHHhcCCCCCCceEEEEecchh-------hhhhccccccccccCCCCChhhHHHHHHHHhhccC
Q 003086 265 LIVMDDVWGEDLAWWRRIYEGLPKGKGSSIIITTRNGK-------VSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAAT 337 (849)
Q Consensus 265 LlVlDdv~~~~~~~~~~l~~~l~~~~~s~ilvTtr~~~-------v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~ 337 (849)
+|++||++.......-.+...+. ..|..||+|++... ....+... ..+++++++.++..+++.+.+...
T Consensus 88 ~lliDdi~~~~~~~lf~l~N~~~-e~g~~ilits~~~p~~l~l~~L~SRl~~g--l~~~l~~pd~~~~~~~l~k~~~~~- 163 (214)
T PRK06620 88 AFIIEDIENWQEPALLHIFNIIN-EKQKYLLLTSSDKSRNFTLPDLSSRIKSV--LSILLNSPDDELIKILIFKHFSIS- 163 (214)
T ss_pred EEEEeccccchHHHHHHHHHHHH-hcCCEEEEEcCCCccccchHHHHHHHhCC--ceEeeCCCCHHHHHHHHHHHHHHc-
Confidence 78999997522111112222221 23678999987422 22222222 378999999999999988887421
Q ss_pred CCCCCCCchhHHHHHHHHhcCCchhHHH
Q 003086 338 EGECQHPSLEGVGKEIVEKCKGLPLAIK 365 (849)
Q Consensus 338 ~~~~~~~~~~~~~~~i~~~c~G~PLai~ 365 (849)
...--+++.+.|++.+.|.--.+.
T Consensus 164 ----~l~l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 164 ----SVTISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred ----CCCCCHHHHHHHHHHccCCHHHHH
Confidence 122336778888888877665443
No 147
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.91 E-value=0.00011 Score=86.37 Aligned_cols=157 Identities=13% Similarity=0.085 Sum_probs=89.6
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcc-----cCceEEEEeCCccCHHHHHHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENW-----FERRMWVSVSQTFTEEQIMRSM 235 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-----f~~~~wv~~s~~~~~~~~~~~i 235 (849)
..++||+.+++++++.|.... ..-+.++|++|+|||++|+.++... +... .++.+|.. +...+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i-~~~~vP~~l~~~~~~~l-----~~~~l---- 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRI-VQGDVPEVMADCTIYSL-----DIGSL---- 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHH-HhcCCCchhcCCeEEec-----cHHHH----
Confidence 358999999999999998753 2345689999999999999998631 1111 13344421 11111
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHh-cCccEEEEEcCCCcc--------CHHHHH-HHHhcCCCCCCceEEEEecchhhhh
Q 003086 236 LRNLGDASAGDDRGELLRKINQYL-LGKRYLIVMDDVWGE--------DLAWWR-RIYEGLPKGKGSSIIITTRNGKVSQ 305 (849)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~--------~~~~~~-~l~~~l~~~~~s~ilvTtr~~~v~~ 305 (849)
+ .+.....+.+.....+.+.+ ...+.+|++|++..- ...+.. .++..+ ....-+||-+|...+...
T Consensus 254 l---aG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L-~~g~i~vIgATt~~E~~~ 329 (758)
T PRK11034 254 L---AGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL-SSGKIRVIGSTTYQEFSN 329 (758)
T ss_pred h---cccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH-hCCCeEEEecCChHHHHH
Confidence 1 11111112222333333333 346789999999641 112222 233333 233455666665544322
Q ss_pred hccc-----cccccccCCCCChhhHHHHHHHHh
Q 003086 306 KMGV-----KKARMHFPKFLSEDDSWLLFRKIA 333 (849)
Q Consensus 306 ~~~~-----~~~~~~~l~~L~~~e~~~lf~~~~ 333 (849)
.... .....+.+++.+.+++.+++....
T Consensus 330 ~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 330 IFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1111 122578999999999999998765
No 148
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.89 E-value=2e-06 Score=95.73 Aligned_cols=84 Identities=29% Similarity=0.370 Sum_probs=46.8
Q ss_pred hcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChh-hhcc
Q 003086 554 FSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSY-VQSF 632 (849)
Q Consensus 554 ~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~l 632 (849)
+..+++|++|+|++|.|.. ...+..++.|+.|++++| .+..++. +..+.+|+.+++++|..... ... +..+
T Consensus 114 l~~~~~L~~L~ls~N~I~~-----i~~l~~l~~L~~L~l~~N-~i~~~~~-~~~l~~L~~l~l~~n~i~~i-e~~~~~~~ 185 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITK-----LEGLSTLTLLKELNLSGN-LISDISG-LESLKSLKLLDLSYNRIVDI-ENDELSEL 185 (414)
T ss_pred hhhhhcchheecccccccc-----ccchhhccchhhheeccC-cchhccC-CccchhhhcccCCcchhhhh-hhhhhhhc
Confidence 4556666666666666641 234555556666666666 5555543 44466666666665543322 221 3556
Q ss_pred cCCcEeeccCCCC
Q 003086 633 IQLRALDVTHCGS 645 (849)
Q Consensus 633 ~~L~~L~l~~~~~ 645 (849)
.+|+.+.+.+|.+
T Consensus 186 ~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 186 ISLEELDLGGNSI 198 (414)
T ss_pred cchHHHhccCCch
Confidence 6666666666654
No 149
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=2e-06 Score=85.02 Aligned_cols=43 Identities=14% Similarity=0.100 Sum_probs=23.8
Q ss_pred CCCCCCceEEEeeCCccccccccccCcccccccceeecccccccc
Q 003086 759 ASLPMLRYLSVCSGNLSKMHDSFWGENNTVWKIEALLFESLSDLG 803 (849)
Q Consensus 759 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~fp~~L~~L~l~~l~~L~ 803 (849)
..+|.+--|+|+.|+|.+... .-.-++|| +|..|.+++.+-++
T Consensus 221 e~~p~~~~LnL~~~~idswas-vD~Ln~f~-~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 221 EPFPSLSCLNLGANNIDSWAS-VDALNGFP-QLVDLRVSENPLSD 263 (418)
T ss_pred CCCCcchhhhhcccccccHHH-HHHHcCCc-hhheeeccCCcccc
Confidence 345555566676666654321 11223677 77777777666554
No 150
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.88 E-value=0.00066 Score=76.63 Aligned_cols=156 Identities=13% Similarity=0.150 Sum_probs=92.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhccc--CceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFNDREIENWF--ERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGK 262 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 262 (849)
..+.|+|..|+|||.|++.+++. ....+ ..+++++. .++..++...+... .. +.+++.+.+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yita------eef~~el~~al~~~----~~----~~f~~~y~~- 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSS------EEFTNEFINSIRDG----KG----DSFRRRYRE- 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHhc----cH----HHHHHHhhc-
Confidence 45899999999999999999984 33322 23556643 34455554444221 11 223333332
Q ss_pred cEEEEEcCCCcc-CHHHH-HHHHhcCCC--CCCceEEEEecch---------hhhhhccccccccccCCCCChhhHHHHH
Q 003086 263 RYLIVMDDVWGE-DLAWW-RRIYEGLPK--GKGSSIIITTRNG---------KVSQKMGVKKARMHFPKFLSEDDSWLLF 329 (849)
Q Consensus 263 ~~LlVlDdv~~~-~~~~~-~~l~~~l~~--~~~s~ilvTtr~~---------~v~~~~~~~~~~~~~l~~L~~~e~~~lf 329 (849)
.=+|||||+... ....| +.+...+.. ..+..|||||... .+...+... ..+++++.+.+.-.+++
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~G--Lvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWG--LITDVQPPELETRIAIL 455 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcC--ceEEcCCCCHHHHHHHH
Confidence 348899999652 12222 223332221 2366788888752 222333333 47899999999999999
Q ss_pred HHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHH
Q 003086 330 RKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAI 364 (849)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 364 (849)
.+++.... ...-+++.+.|++.+.+..-.+
T Consensus 456 ~kka~~r~-----l~l~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 456 RKKAVQEQ-----LNAPPEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHHhcC-----CCCCHHHHHHHHHhccCCHHHH
Confidence 99874322 2233677788888877664433
No 151
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.83 E-value=3.3e-06 Score=82.40 Aligned_cols=248 Identities=17% Similarity=0.075 Sum_probs=128.9
Q ss_pred hcCCCcceEEecCCccccccc-cccccccCCCCccceEeccCCCCCc----ccC-------ccccCCCCCcEEeeccccC
Q 003086 554 FSECRYLRVLDISRSIFELPL-KGLLSQTGSLQHLSYLCLSNTHPLI----HLP-------PSLKKLKNLQILDVSYCQN 621 (849)
Q Consensus 554 ~~~l~~Lr~L~L~~~~~~~~~-~~~p~~~~~l~~Lr~L~L~~~~~~~----~lp-------~~i~~L~~L~~L~L~~~~~ 621 (849)
+..+..+..+|||+|.|.... ..+...+.+-.+|+..+++.- ..+ .+| ..+-+|++||+.+||.|-+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 445788999999999986311 122334556678888888864 332 233 3356889999999998887
Q ss_pred CccCChh----hhcccCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccC
Q 003086 622 LKMLPSY----VQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCG 697 (849)
Q Consensus 622 ~~~lp~~----i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 697 (849)
....|.. |++-+.|.||.+++|..-..-...|++ .|+.|-. .....+-|.|+...+..|++
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~la~-------------nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFHLAY-------------NKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHHHHH-------------HhhhccCCCceEEEeccchh
Confidence 7666654 456788999999998753111111221 1222210 01122334455555555443
Q ss_pred cccch----HhhcCCCCCCeEEEEeecCCCCchh-hhccccCCCCCCCeEEEeccCC---------CCCCCcCCCCCCCC
Q 003086 698 DEIEE----DALVNLRELQFLSISCFDSHGSDLV-AKIDELYPPEQLDELSLNFYPG---------KTSPVWLNPASLPM 763 (849)
Q Consensus 698 ~~~~~----~~l~~~~~L~~L~L~~~~~~~~~~~-~~l~~l~~~~~L~~L~l~~~~~---------~~~p~~~~~~~l~~ 763 (849)
..-.. ..+..-.+|+.+.+..|.+.....- -.+..+.-+.+|+.|++..++. ...|.| +.
T Consensus 170 engs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W------~~ 243 (388)
T COG5238 170 ENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEW------NL 243 (388)
T ss_pred ccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhccc------ch
Confidence 22211 2222334555555555544322110 1122233345555555544321 223455 45
Q ss_pred CceEEEeeCCcccccccc----ccCcccccccceeecccccc-----ccccc-ccccccccccceeeeccc
Q 003086 764 LRYLSVCSGNLSKMHDSF----WGENNTVWKIEALLFESLSD-----LGIEW-TRLQGVMPSLHIVNASWC 824 (849)
Q Consensus 764 L~~L~L~~n~l~~~~~~~----~~~~~fp~~L~~L~l~~l~~-----L~l~~-~~~~~~~p~L~~L~i~~c 824 (849)
|+.|.+..|-++.-+... +....|| .|..|.+.+... +.... .+..+++|.|..|.+.++
T Consensus 244 lrEL~lnDClls~~G~~~v~~~f~e~~~p-~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN 313 (388)
T COG5238 244 LRELRLNDCLLSNEGVKSVLRRFNEKFVP-NLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN 313 (388)
T ss_pred hhhccccchhhccccHHHHHHHhhhhcCC-CccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC
Confidence 778888777666443322 1222456 666655553211 00011 233456776666666544
No 152
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.81 E-value=0.00027 Score=78.31 Aligned_cols=153 Identities=13% Similarity=0.140 Sum_probs=88.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCcc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKR 263 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 263 (849)
...+.|+|++|+|||+|++.+++. +......+++++ ...+...+...+... . .+.++..+. ..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~------~~~f~~~~~~~l~~~----~----~~~f~~~~~-~~ 203 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVR------SELFTEHLVSAIRSG----E----MQRFRQFYR-NV 203 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEee------HHHHHHHHHHHHhcc----h----HHHHHHHcc-cC
Confidence 356889999999999999999984 332223455654 334555555555321 1 123333333 34
Q ss_pred EEEEEcCCCccCH--HHHHHHHhcCCC--CCCceEEEEecch---------hhhhhccccccccccCCCCChhhHHHHHH
Q 003086 264 YLIVMDDVWGEDL--AWWRRIYEGLPK--GKGSSIIITTRNG---------KVSQKMGVKKARMHFPKFLSEDDSWLLFR 330 (849)
Q Consensus 264 ~LlVlDdv~~~~~--~~~~~l~~~l~~--~~~s~ilvTtr~~---------~v~~~~~~~~~~~~~l~~L~~~e~~~lf~ 330 (849)
-+|++||+..... ...+.+...+.. ..|..||+||... .+...+... ..+++.+++.++..+++.
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~G--l~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWG--IAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCC--eEEecCCCCHHHHHHHHH
Confidence 5888999865211 112233332221 2356788888541 112222211 478899999999999999
Q ss_pred HHhhccCCCCCCCCchhHHHHHHHHhcCCc
Q 003086 331 KIAFAATEGECQHPSLEGVGKEIVEKCKGL 360 (849)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~ 360 (849)
+.+.... ..-.+++...|++.+.|.
T Consensus 282 ~k~~~~~-----~~l~~evl~~la~~~~~d 306 (445)
T PRK12422 282 RKAEALS-----IRIEETALDFLIEALSSN 306 (445)
T ss_pred HHHHHcC-----CCCCHHHHHHHHHhcCCC
Confidence 9874321 222356666677766644
No 153
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.80 E-value=0.0013 Score=64.63 Aligned_cols=179 Identities=16% Similarity=0.173 Sum_probs=109.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeC-CccCHHHHHHHHHHHhcCCCCCCCHH----HHHHHHHH
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVS-QTFTEEQIMRSMLRNLGDASAGDDRG----ELLRKINQ 257 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~~~~~~----~~~~~l~~ 257 (849)
+.+++.++|.-|.|||++++.+.... . =+.++=|.+. +..+...+...|+..+.... ..... +....+..
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~--~--~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p-~~~~~~~~e~~~~~L~a 124 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASL--N--EDQVAVVVIDKPTLSDATLLEAIVADLESQP-KVNVNAVLEQIDRELAA 124 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhc--C--CCceEEEEecCcchhHHHHHHHHHHHhccCc-cchhHHHHHHHHHHHHH
Confidence 46799999999999999999543311 0 1112223333 45677788889998887732 22222 22333333
Q ss_pred Hh-cCcc-EEEEEcCCCccCHHHHHHHHhcCCC--C-C-CceEEEEecch-------hhhhhcccccccc-ccCCCCChh
Q 003086 258 YL-LGKR-YLIVMDDVWGEDLAWWRRIYEGLPK--G-K-GSSIIITTRNG-------KVSQKMGVKKARM-HFPKFLSED 323 (849)
Q Consensus 258 ~l-~~~~-~LlVlDdv~~~~~~~~~~l~~~l~~--~-~-~s~ilvTtr~~-------~v~~~~~~~~~~~-~~l~~L~~~ 323 (849)
.. ++++ ..+++||......+..+.++-.... . . --+|+..-..+ .+....+... .. |++.|++.+
T Consensus 125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~-~ir~~l~P~~~~ 203 (269)
T COG3267 125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRI-DIRIELPPLTEA 203 (269)
T ss_pred HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheE-EEEEecCCcChH
Confidence 33 5677 9999999987666666655544332 1 1 22344444321 1111111111 23 899999999
Q ss_pred hHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHhh
Q 003086 324 DSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVGG 369 (849)
Q Consensus 324 e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~ 369 (849)
+...++..+..+...+ .+---.+....|..+..|.|.+|..++.
T Consensus 204 ~t~~yl~~~Le~a~~~--~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 204 ETGLYLRHRLEGAGLP--EPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHhccCCC--cccCChhHHHHHHHHhccchHHHHHHHH
Confidence 9999999998665332 2222355667899999999999887763
No 154
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.79 E-value=0.00017 Score=80.22 Aligned_cols=161 Identities=13% Similarity=0.127 Sum_probs=90.9
Q ss_pred CCCccccccccHHHHHHHHhcc-----------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcc-----cCceEEEEe
Q 003086 159 DHTLVVGLEGDTRKIKDWLFEA-----------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENW-----FERRMWVSV 222 (849)
Q Consensus 159 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-----f~~~~wv~~ 222 (849)
.-.++.|.+..+++|.+.+..+ -...+-+.++|++|+|||++|+.+++. .... .....|+.+
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v 257 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNI 257 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEec
Confidence 3356889999999998876421 123456899999999999999999884 2222 223445554
Q ss_pred CCccCHHHHHHHHHHHhcCCCCCCCH---HHHHHHHHHHh-cCccEEEEEcCCCcc--------CH----HHHHHHHhcC
Q 003086 223 SQTFTEEQIMRSMLRNLGDASAGDDR---GELLRKINQYL-LGKRYLIVMDDVWGE--------DL----AWWRRIYEGL 286 (849)
Q Consensus 223 s~~~~~~~~~~~i~~~l~~~~~~~~~---~~~~~~l~~~l-~~~~~LlVlDdv~~~--------~~----~~~~~l~~~l 286 (849)
.... + +.. ..+... ..+.+..++.. .+++++|+||+++.. .. .....+...+
T Consensus 258 ~~~e----L----l~k----yvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 258 KGPE----L----LNK----YVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred cchh----h----ccc----ccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 4321 1 111 011111 11222222221 357899999999641 00 1122333333
Q ss_pred CC---CCCceEEEEecchhhhh-hccc--cccccccCCCCChhhHHHHHHHHh
Q 003086 287 PK---GKGSSIIITTRNGKVSQ-KMGV--KKARMHFPKFLSEDDSWLLFRKIA 333 (849)
Q Consensus 287 ~~---~~~s~ilvTtr~~~v~~-~~~~--~~~~~~~l~~L~~~e~~~lf~~~~ 333 (849)
.. ..+..||.||...+... .+-. .-...+++...+.++..++|.++.
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 32 12445666665543322 1111 111468999999999999999886
No 155
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.79 E-value=0.00024 Score=77.89 Aligned_cols=155 Identities=17% Similarity=0.132 Sum_probs=88.7
Q ss_pred CccccccccHHHHHHHHhcc-----------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEA-----------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEE 229 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 229 (849)
.++.|.+..+++|.+.+.-+ -...+.|.++|++|+|||++|+.+++. ....| +.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f-----i~V~~s---- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF-----LRVVGS---- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE-----EEEecc----
Confidence 46789999999988876421 123456889999999999999999883 33333 222211
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCcc-----------CHHHHHHHHh---cCC---CCCCc
Q 003086 230 QIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGE-----------DLAWWRRIYE---GLP---KGKGS 292 (849)
Q Consensus 230 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------~~~~~~~l~~---~l~---~~~~s 292 (849)
++. ... .+.....+...+.....+.+.+|+||+++.. +.+....+.. .+. ...+.
T Consensus 252 eL~----~k~----~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V 323 (438)
T PTZ00361 252 ELI----QKY----LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDV 323 (438)
T ss_pred hhh----hhh----cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCe
Confidence 111 111 1111222222233333467889999997431 0111111222 221 12266
Q ss_pred eEEEEecchhhhhh-cc--ccccccccCCCCChhhHHHHHHHHhh
Q 003086 293 SIIITTRNGKVSQK-MG--VKKARMHFPKFLSEDDSWLLFRKIAF 334 (849)
Q Consensus 293 ~ilvTtr~~~v~~~-~~--~~~~~~~~l~~L~~~e~~~lf~~~~~ 334 (849)
.||+||...+.... +- ......+++...+.++..++|..+..
T Consensus 324 ~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 324 KVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred EEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 78888876443322 11 11125789999999999999998763
No 156
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.79 E-value=7.4e-05 Score=68.51 Aligned_cols=68 Identities=19% Similarity=0.203 Sum_probs=40.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCc-cEE
Q 003086 187 IGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGK-RYL 265 (849)
Q Consensus 187 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~-~~L 265 (849)
|.|+|++|+||||+|+.+++. ... ..+.++.+... .....+....+...+.+.-... +.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~--l~~---~~~~i~~~~~~--------------~~~~~~~~~~i~~~~~~~~~~~~~~v 61 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY--LGF---PFIEIDGSELI--------------SSYAGDSEQKIRDFFKKAKKSAKPCV 61 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH--TTS---EEEEEETTHHH--------------TSSTTHHHHHHHHHHHHHHHTSTSEE
T ss_pred CEEECcCCCCeeHHHHHHHhh--ccc---ccccccccccc--------------ccccccccccccccccccccccccee
Confidence 579999999999999999884 221 13444443211 1111222333333333332333 799
Q ss_pred EEEcCCCc
Q 003086 266 IVMDDVWG 273 (849)
Q Consensus 266 lVlDdv~~ 273 (849)
|++||++.
T Consensus 62 l~iDe~d~ 69 (132)
T PF00004_consen 62 LFIDEIDK 69 (132)
T ss_dssp EEEETGGG
T ss_pred eeeccchh
Confidence 99999966
No 157
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.75 E-value=0.00039 Score=84.16 Aligned_cols=158 Identities=15% Similarity=0.154 Sum_probs=87.9
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcc------cCceEEEEeCCccCHHHHHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENW------FERRMWVSVSQTFTEEQIMRS 234 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~------f~~~~wv~~s~~~~~~~~~~~ 234 (849)
..++||+.+++++++.|.... ...+.++|++|+|||++|+.+... +... ....+|.. +...++
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~--i~~~~~p~~l~~~~~~~l-----~~~~l~-- 241 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQR--IVNGDVPESLKNKRLLAL-----DMGALI-- 241 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHH--HhccCCchhhcCCeEEEe-----eHHHHh--
Confidence 359999999999999998764 334568999999999999998773 2111 12233321 111111
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHh-c-CccEEEEEcCCCccC--------HHHHHHHHhcCCCCCCceEEEEecchhhh
Q 003086 235 MLRNLGDASAGDDRGELLRKINQYL-L-GKRYLIVMDDVWGED--------LAWWRRIYEGLPKGKGSSIIITTRNGKVS 304 (849)
Q Consensus 235 i~~~l~~~~~~~~~~~~~~~l~~~l-~-~~~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~s~ilvTtr~~~v~ 304 (849)
. +....+ +.+.....+.+.+ . +++.+|++|+++.-. .+.-+.++..+. ...-++|-+|...+..
T Consensus 242 --a--~~~~~g-~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~-~g~i~~IgaTt~~e~r 315 (852)
T TIGR03346 242 --A--GAKYRG-EFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA-RGELHCIGATTLDEYR 315 (852)
T ss_pred --h--cchhhh-hHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh-cCceEEEEeCcHHHHH
Confidence 0 001111 2222222222222 2 468999999997511 112223333332 2244566666554432
Q ss_pred hhcc-----ccccccccCCCCChhhHHHHHHHHhhc
Q 003086 305 QKMG-----VKKARMHFPKFLSEDDSWLLFRKIAFA 335 (849)
Q Consensus 305 ~~~~-----~~~~~~~~l~~L~~~e~~~lf~~~~~~ 335 (849)
.... ......+.+...+.++...++......
T Consensus 316 ~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~ 351 (852)
T TIGR03346 316 KYIEKDAALERRFQPVFVDEPTVEDTISILRGLKER 351 (852)
T ss_pred HHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 2111 112246788888999999998876533
No 158
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.75 E-value=0.00084 Score=66.37 Aligned_cols=121 Identities=17% Similarity=0.165 Sum_probs=71.7
Q ss_pred CCCCccccccccHHHHHHHHhc--cCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHH
Q 003086 158 YDHTLVVGLEGDTRKIKDWLFE--AEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSM 235 (849)
Q Consensus 158 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 235 (849)
+.-.+++|.|.+++.|++-... .+....-|.++|..|+|||++++.+.+. ....= .--|.+....
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~--y~~~G--LRlIev~k~~--------- 90 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNE--YADQG--LRLIEVSKED--------- 90 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHH--HhhcC--ceEEEECHHH---------
Confidence 3456799999999998764432 1223556788999999999999999873 21111 1122332210
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCc-cCHHHHHHHHhcCCCC----C-CceEEEEecchh
Q 003086 236 LRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWG-EDLAWWRRIYEGLPKG----K-GSSIIITTRNGK 302 (849)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~----~-~s~ilvTtr~~~ 302 (849)
-.+...+.+.++. ...||+|++||+.- +....+..++..|..+ + +..|..||..++
T Consensus 91 ---------L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 91 ---------LGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred ---------hccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 0133333344432 35799999999853 3455567777766542 2 344455554443
No 159
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.74 E-value=0.0003 Score=84.77 Aligned_cols=158 Identities=15% Similarity=0.142 Sum_probs=86.7
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhh---cc-cCceE-EEEeCCccCHHHHHHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIE---NW-FERRM-WVSVSQTFTEEQIMRSM 235 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~-f~~~~-wv~~s~~~~~~~~~~~i 235 (849)
.+++||+.+++++++.|.... ...+.++|.+|+|||++|+.+.....-. .. ....+ ++.++. ++.
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l~a-- 247 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LVA-- 247 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------hhh--
Confidence 469999999999999998764 3356689999999999999987731100 00 12222 232221 110
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHh-cCccEEEEEcCCCccC--------HHHHHHHHhcCCCCCCceEEEEecchhhhhh
Q 003086 236 LRNLGDASAGDDRGELLRKINQYL-LGKRYLIVMDDVWGED--------LAWWRRIYEGLPKGKGSSIIITTRNGKVSQK 306 (849)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~s~ilvTtr~~~v~~~ 306 (849)
+....+.-...+...+.+.- .+.+.+|++|+++.-. .+.-+.++..+. ...-++|-||...+....
T Consensus 248 ----g~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~-~g~l~~IgaTt~~e~r~~ 322 (857)
T PRK10865 248 ----GAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-RGELHCVGATTLDEYRQY 322 (857)
T ss_pred ----ccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh-cCCCeEEEcCCCHHHHHH
Confidence 00111111222222332222 3568999999996511 112233433332 224566666665543211
Q ss_pred cc-----ccccccccCCCCChhhHHHHHHHHh
Q 003086 307 MG-----VKKARMHFPKFLSEDDSWLLFRKIA 333 (849)
Q Consensus 307 ~~-----~~~~~~~~l~~L~~~e~~~lf~~~~ 333 (849)
.. ......+.+..-+.++...+++...
T Consensus 323 ~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 323 IEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred hhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 11 1111356666668899999887665
No 160
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.74 E-value=0.00038 Score=75.92 Aligned_cols=181 Identities=14% Similarity=0.149 Sum_probs=98.9
Q ss_pred CCCCccccccccHHHHHHHHhcc----C-------CCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCcc
Q 003086 158 YDHTLVVGLEGDTRKIKDWLFEA----E-------EGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTF 226 (849)
Q Consensus 158 ~~~~~~vGr~~~~~~l~~~L~~~----~-------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 226 (849)
..-.++.|.+..+++|.+.+..+ + ...+-|.++|++|+|||+||+.+++. ....| +.+..
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f-----i~i~~-- 212 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF-----IRVVG-- 212 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh--
Confidence 33456889999998887765421 0 24567899999999999999999884 22222 22221
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCcc-----------CHHH---HHHHHhcCC---CC
Q 003086 227 TEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGE-----------DLAW---WRRIYEGLP---KG 289 (849)
Q Consensus 227 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------~~~~---~~~l~~~l~---~~ 289 (849)
..+. ... .+.....+.+.+.......+.+|+||+++.. +... +..+...+. ..
T Consensus 213 --s~l~----~k~----~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 213 --SEFV----QKY----LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred --HHHH----HHh----cchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 1111 111 1112222223333333567899999997531 1111 122222222 12
Q ss_pred CCceEEEEecchhhhh-hcc--ccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhH
Q 003086 290 KGSSIIITTRNGKVSQ-KMG--VKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLA 363 (849)
Q Consensus 290 ~~s~ilvTtr~~~v~~-~~~--~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLa 363 (849)
.+..||+||...+... .+- ..-...+++...+.++..++|..+...... ....+ ..++++.+.|..-|
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l--~~dvd----~~~la~~t~g~sga 353 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNL--SEEVD----LEDFVSRPEKISAA 353 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCC--CcccC----HHHHHHHcCCCCHH
Confidence 2567888887543322 111 111256888888999988888877532211 11122 34566667666543
No 161
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.00077 Score=75.04 Aligned_cols=159 Identities=16% Similarity=0.168 Sum_probs=96.0
Q ss_pred CCCccccccccHHHHHHHHhc----cCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHH
Q 003086 159 DHTLVVGLEGDTRKIKDWLFE----AEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRS 234 (849)
Q Consensus 159 ~~~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 234 (849)
.+.+-+|.++-+++|++++.- ++..-++++.+|++|||||++|+.|+. .....| +-++|+.-.|+.+|-..
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDVAEIKGH 483 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce---EEEeccccccHHhhccc
Confidence 445678999999999998853 334568999999999999999999987 333333 34567766665554210
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCcc------C-HHHHHHH---------HhcCCCCC--CceEEE
Q 003086 235 MLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGE------D-LAWWRRI---------YEGLPKGK--GSSIII 296 (849)
Q Consensus 235 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~------~-~~~~~~l---------~~~l~~~~--~s~ilv 296 (849)
....-+.-...+++.|++ .+..+-|+.||.|+.- + ....-++ .+.+.+-+ =|+|++
T Consensus 484 -----RRTYVGAMPGkiIq~LK~-v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLF 557 (906)
T KOG2004|consen 484 -----RRTYVGAMPGKIIQCLKK-VKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLF 557 (906)
T ss_pred -----ceeeeccCChHHHHHHHh-hCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEE
Confidence 001113344555666555 3445678999998541 1 1111111 11111112 467644
Q ss_pred -Eecc------hhhhhhccccccccccCCCCChhhHHHHHHHHh
Q 003086 297 -TTRN------GKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIA 333 (849)
Q Consensus 297 -Ttr~------~~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 333 (849)
.|-+ ..+...| ..++|.+...+|-.++-.++.
T Consensus 558 icTAN~idtIP~pLlDRM-----EvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 558 ICTANVIDTIPPPLLDRM-----EVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEeccccccCChhhhhhh-----heeeccCccHHHHHHHHHHhh
Confidence 3432 1111222 478899999999888887776
No 162
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.69 E-value=0.003 Score=66.45 Aligned_cols=94 Identities=11% Similarity=0.040 Sum_probs=68.6
Q ss_pred CccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEec-chhhhhhccccccccccCCCCChhhHHHHHHHHhhccCC
Q 003086 261 GKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITTR-NGKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATE 338 (849)
Q Consensus 261 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTtr-~~~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~ 338 (849)
+.+-++|+|+++..+......+...+.+-+ ++.+|++|. ...+...+.+.. ..+.+.+++.+++.+.+....
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRC-q~~~~~~~~~~~~~~~L~~~~----- 180 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRC-QQWVVTPPSTAQAMQWLKGQG----- 180 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc-eeEeCCCCCHHHHHHHHHHcC-----
Confidence 455699999999888888999999997765 666655555 455555554444 688999999999999886532
Q ss_pred CCCCCCchhHHHHHHHHhcCCchhHHHHHh
Q 003086 339 GECQHPSLEGVGKEIVEKCKGLPLAIKAVG 368 (849)
Q Consensus 339 ~~~~~~~~~~~~~~i~~~c~G~PLai~~~~ 368 (849)
.. .+..++..++|.|+.+..+.
T Consensus 181 ---~~-----~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 181 ---IT-----VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred ---Cc-----hHHHHHHHcCCCHHHHHHHh
Confidence 01 23567889999999776553
No 163
>PRK08116 hypothetical protein; Validated
Probab=97.67 E-value=0.0003 Score=72.71 Aligned_cols=102 Identities=24% Similarity=0.348 Sum_probs=59.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccE
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRY 264 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 264 (849)
..+.|+|.+|+|||.||..+++. ...+-..+++++ ..+++..+......... .+..+ +.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~------~~~ll~~i~~~~~~~~~-~~~~~----~~~~l~~~d- 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVN------FPQLLNRIKSTYKSSGK-EDENE----IIRSLVNAD- 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHhcccc-ccHHH----HHHHhcCCC-
Confidence 45889999999999999999994 333333456665 34556666555432211 12222 233343333
Q ss_pred EEEEcCCCccCHHHHH--HHHhcCCC--CCCceEEEEecc
Q 003086 265 LIVMDDVWGEDLAWWR--RIYEGLPK--GKGSSIIITTRN 300 (849)
Q Consensus 265 LlVlDdv~~~~~~~~~--~l~~~l~~--~~~s~ilvTtr~ 300 (849)
||||||+..+....|. .+...+.. ..+..+|+||..
T Consensus 181 lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 8999999543233343 33333332 236779999963
No 164
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=2.3e-05 Score=77.60 Aligned_cols=135 Identities=21% Similarity=0.219 Sum_probs=85.8
Q ss_pred ccccccceeeeeccCcccch--HhhcCCCCCCeEEEEeecCCCCchhhhcccc-CCCCCCCeEEEeccCCC--CCCCcCC
Q 003086 683 NLTRLRKLGLQLTCGDEIEE--DALVNLRELQFLSISCFDSHGSDLVAKIDEL-YPPEQLDELSLNFYPGK--TSPVWLN 757 (849)
Q Consensus 683 ~l~~L~~L~l~~~~~~~~~~--~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l-~~~~~L~~L~l~~~~~~--~~p~~~~ 757 (849)
.++.++.|++.+|.++.+.. ..+.++|+|+.|+|++|.+.. .+..+ .|..+|+.|-++|.... ...+.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s-----~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l- 142 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS-----DIKSLPLPLKNLRVLVLNGTGLSWTQSTSSL- 142 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC-----ccccCcccccceEEEEEcCCCCChhhhhhhh-
Confidence 56789999999998877654 667899999999999997654 34444 36779999999875322 112222
Q ss_pred CCCCCCCceEEEeeCCccccccc-cccCcccccccceeecccccccc-cccccccccccccceeeecccc
Q 003086 758 PASLPMLRYLSVCSGNLSKMHDS-FWGENNTVWKIEALLFESLSDLG-IEWTRLQGVMPSLHIVNASWCP 825 (849)
Q Consensus 758 ~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~fp~~L~~L~l~~l~~L~-l~~~~~~~~~p~L~~L~i~~c~ 825 (849)
..+|.++.|.++.|++..+... .+....-| .+++|++..|.... ++.+.....||++..+.+..||
T Consensus 143 -~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~-~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P 210 (418)
T KOG2982|consen 143 -DDLPKVTELHMSDNSLRQLNLDDNCIEDWST-EVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP 210 (418)
T ss_pred -hcchhhhhhhhccchhhhhccccccccccch-hhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc
Confidence 6789999999998855432211 11111223 55566655554322 0223444567777766666654
No 165
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.00096 Score=71.40 Aligned_cols=149 Identities=9% Similarity=0.014 Sum_probs=90.4
Q ss_pred cccc-ccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhc--------------------ccCceEEE
Q 003086 162 LVVG-LEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIEN--------------------WFERRMWV 220 (849)
Q Consensus 162 ~~vG-r~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv 220 (849)
.++| -+.-++.+...+..+. -.....++|+.|+||||+|+.+.+.---.. |.| ..++
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD-~~~i 83 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPD-VHLV 83 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCC-EEEe
Confidence 3556 5555666666665432 345678999999999999988855210000 111 1111
Q ss_pred EeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH----hcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEE
Q 003086 221 SVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQY----LLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSII 295 (849)
Q Consensus 221 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~il 295 (849)
.... .....+++.+.+... ..+.+-++|+|++...+....+.++..+.+-+ ++.+|
T Consensus 84 ~~~~-------------------~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~I 144 (329)
T PRK08058 84 APDG-------------------QSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAI 144 (329)
T ss_pred cccc-------------------ccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEE
Confidence 1100 011223333222221 23456689999998877888889999998755 77777
Q ss_pred EEecc-hhhhhhccccccccccCCCCChhhHHHHHHHH
Q 003086 296 ITTRN-GKVSQKMGVKKARMHFPKFLSEDDSWLLFRKI 332 (849)
Q Consensus 296 vTtr~-~~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~ 332 (849)
++|.+ ..+...+.... ..+++.+++.++..+.+...
T Consensus 145 l~t~~~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 145 LLTENKHQILPTILSRC-QVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred EEeCChHhCcHHHHhhc-eeeeCCCCCHHHHHHHHHHc
Confidence 66654 44444444333 68999999999998887653
No 166
>CHL00176 ftsH cell division protein; Validated
Probab=97.64 E-value=0.00045 Score=79.76 Aligned_cols=176 Identities=14% Similarity=0.161 Sum_probs=98.0
Q ss_pred CccccccccHHHHHHH---HhccC-------CCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHH
Q 003086 161 TLVVGLEGDTRKIKDW---LFEAE-------EGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQ 230 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~---L~~~~-------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 230 (849)
.++.|.++.++++.+. +..+. ...+-|.++|++|+|||+||+.++... . +-|+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~-----~p~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--E-----VPFFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--C-----CCeeeccHH----H
Confidence 4688888766666544 33321 124568999999999999999998742 1 223433311 1
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCcc-----------CHH---HHHHHHhcCC---CCCCce
Q 003086 231 IMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGE-----------DLA---WWRRIYEGLP---KGKGSS 293 (849)
Q Consensus 231 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------~~~---~~~~l~~~l~---~~~~s~ 293 (849)
+.. .. .+.....+...+.......+++|+|||++.. +.. .+..+...+. ...+..
T Consensus 252 f~~----~~----~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~Vi 323 (638)
T CHL00176 252 FVE----MF----VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVI 323 (638)
T ss_pred HHH----Hh----hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCee
Confidence 111 10 0112233344445555678899999999541 011 1222332222 222556
Q ss_pred EEEEecchhhhh-hccc--cccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCch
Q 003086 294 IIITTRNGKVSQ-KMGV--KKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLP 361 (849)
Q Consensus 294 ilvTtr~~~v~~-~~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 361 (849)
||.||...+... .+.. .....+.+...+.++-.++++.++.... .........+++.+.|..
T Consensus 324 VIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~------~~~d~~l~~lA~~t~G~s 388 (638)
T CHL00176 324 VIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK------LSPDVSLELIARRTPGFS 388 (638)
T ss_pred EEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc------cchhHHHHHHHhcCCCCC
Confidence 777776543322 1111 1115678888899999999998874311 112334567888888743
No 167
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.61 E-value=0.00029 Score=65.27 Aligned_cols=87 Identities=18% Similarity=0.127 Sum_probs=48.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCc-c
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGK-R 263 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~-~ 263 (849)
..+.|+|++|+||||+|+.++.. .......++++..+........... ...................+.+..... .
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 57899999999999999999884 2222223566655543322222111 111111111223333333444444443 4
Q ss_pred EEEEEcCCCcc
Q 003086 264 YLIVMDDVWGE 274 (849)
Q Consensus 264 ~LlVlDdv~~~ 274 (849)
.++++|++...
T Consensus 80 ~viiiDei~~~ 90 (148)
T smart00382 80 DVLILDEITSL 90 (148)
T ss_pred CEEEEECCccc
Confidence 89999999873
No 168
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.59 E-value=0.002 Score=67.82 Aligned_cols=96 Identities=10% Similarity=0.118 Sum_probs=68.6
Q ss_pred CccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEecc-hhhhhhccccccccccCCCCChhhHHHHHHHHhhccCC
Q 003086 261 GKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITTRN-GKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATE 338 (849)
Q Consensus 261 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTtr~-~~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~ 338 (849)
+++-++|+|+++..+...-..+...+..-+ ++.+|++|.+ ..+...+.... ..+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRC-q~i~~~~~~~~~~~~~L~~~~---~- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRC-QRLEFKLPPAHEALAWLLAQG---V- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhh-eEeeCCCcCHHHHHHHHHHcC---C-
Confidence 456799999999877778888888887655 6666666654 45554444433 678899999999998886531 0
Q ss_pred CCCCCCchhHHHHHHHHhcCCchhHHHHHh
Q 003086 339 GECQHPSLEGVGKEIVEKCKGLPLAIKAVG 368 (849)
Q Consensus 339 ~~~~~~~~~~~~~~i~~~c~G~PLai~~~~ 368 (849)
. ...+..++..++|.|+.+..+.
T Consensus 187 ---~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 ---S----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred ---C----hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 2336678999999998775544
No 169
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.57 E-value=6e-05 Score=53.47 Aligned_cols=33 Identities=33% Similarity=0.394 Sum_probs=15.1
Q ss_pred cceEEecCCccccccccccccccCCCCccceEeccCC
Q 003086 559 YLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNT 595 (849)
Q Consensus 559 ~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~ 595 (849)
+|++|++++|.+. .+|..+++|++|++|++++|
T Consensus 2 ~L~~L~l~~N~i~----~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQIT----DLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-S----SHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCc----ccCchHhCCCCCCEEEecCC
Confidence 3455555555543 34444455555555555555
No 170
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.56 E-value=0.0029 Score=66.76 Aligned_cols=95 Identities=7% Similarity=-0.016 Sum_probs=68.5
Q ss_pred cCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEecc-hhhhhhccccccccccCCCCChhhHHHHHHHHhhccC
Q 003086 260 LGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITTRN-GKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAAT 337 (849)
Q Consensus 260 ~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTtr~-~~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~ 337 (849)
.+++-++|+|+++..+......+...+.+-+ ++.+|++|.+ ..+...+.+.. ..+.+.+++.++..+.+.....
T Consensus 105 ~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC-~~~~~~~~~~~~~~~~L~~~~~--- 180 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRC-QTWLIHPPEEQQALDWLQAQSS--- 180 (325)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhc-eEEeCCCCCHHHHHHHHHHHhc---
Confidence 3566789999999888888999999998766 6666666655 45544444333 6889999999999998887641
Q ss_pred CCCCCCCchhHHHHHHHHhcCCchhHHH
Q 003086 338 EGECQHPSLEGVGKEIVEKCKGLPLAIK 365 (849)
Q Consensus 338 ~~~~~~~~~~~~~~~i~~~c~G~PLai~ 365 (849)
.. ...+...+..++|.|+.+.
T Consensus 181 ----~~---~~~~~~~~~l~~g~p~~A~ 201 (325)
T PRK06871 181 ----AE---ISEILTALRINYGRPLLAL 201 (325)
T ss_pred ----cC---hHHHHHHHHHcCCCHHHHH
Confidence 01 1235567889999997543
No 171
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.55 E-value=0.00047 Score=78.97 Aligned_cols=202 Identities=10% Similarity=0.101 Sum_probs=101.5
Q ss_pred CCccccccccHHHHHHHHhccC---CCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeC---CccCHHHHHH
Q 003086 160 HTLVVGLEGDTRKIKDWLFEAE---EGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVS---QTFTEEQIMR 233 (849)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s---~~~~~~~~~~ 233 (849)
-.+++|.++.++++..++.... ...+++.|+|++|+||||+++.++... .++..-|++-. ...+...+..
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l----~~~~~Ew~npv~~~~~~~~~~~~~ 158 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL----GIQVQEWSNPTLPDFQKNDHKVTL 158 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh----hhHHHHHhhhhhhcccccccccch
Confidence 4579999999999999987642 234679999999999999999998742 12223342211 0111111112
Q ss_pred HHHHHhcCCCC-CCCHHHHHHHHHH---H----hcCccEEEEEcCCCcc---CHHHHHHHHh-cCCCCC-CceEEEEecc
Q 003086 234 SMLRNLGDASA-GDDRGELLRKINQ---Y----LLGKRYLIVMDDVWGE---DLAWWRRIYE-GLPKGK-GSSIIITTRN 300 (849)
Q Consensus 234 ~i~~~l~~~~~-~~~~~~~~~~l~~---~----l~~~~~LlVlDdv~~~---~~~~~~~l~~-~l~~~~-~s~ilvTtr~ 300 (849)
.+.+++..... ............. . ..+++.+|+||++... ....+..+.. ...... -.-|++||-+
T Consensus 159 s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI~I~TE~ 238 (637)
T TIGR00602 159 SLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVFIITES 238 (637)
T ss_pred hhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEEEEecCC
Confidence 22222222111 1111122222211 1 1356789999999431 1223444443 222222 2335555522
Q ss_pred hh---------hh------hhcc-ccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCc--hhHHHHHHHHhcCCchh
Q 003086 301 GK---------VS------QKMG-VKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPS--LEGVGKEIVEKCKGLPL 362 (849)
Q Consensus 301 ~~---------v~------~~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~--~~~~~~~i~~~c~G~PL 362 (849)
.. .. ...- ......+.+.+++..+....+.+.+-........... -.+....|+..++|---
T Consensus 239 ~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GDiR 318 (637)
T TIGR00602 239 LEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGDIR 318 (637)
T ss_pred ccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCChHH
Confidence 11 00 0010 1111357899999999777777776432111001101 13456667777777654
Q ss_pred HHH
Q 003086 363 AIK 365 (849)
Q Consensus 363 ai~ 365 (849)
.+.
T Consensus 319 sAI 321 (637)
T TIGR00602 319 SAI 321 (637)
T ss_pred HHH
Confidence 433
No 172
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.55 E-value=0.00029 Score=75.35 Aligned_cols=33 Identities=21% Similarity=0.136 Sum_probs=19.2
Q ss_pred CCCCCeEEEeccCCCCCCCcCCCCCCCCCceEEEeeC
Q 003086 736 PEQLDELSLNFYPGKTSPVWLNPASLPMLRYLSVCSG 772 (849)
Q Consensus 736 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n 772 (849)
+++|+.|.+.++.....|.-+ .++|+.|.++.+
T Consensus 155 PsSLk~L~Is~c~~i~LP~~L----P~SLk~L~ls~n 187 (426)
T PRK15386 155 SPSLKTLSLTGCSNIILPEKL----PESLQSITLHIE 187 (426)
T ss_pred CCcccEEEecCCCcccCcccc----cccCcEEEeccc
Confidence 457777888766544434211 245777777654
No 173
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.54 E-value=0.0012 Score=79.18 Aligned_cols=162 Identities=15% Similarity=0.156 Sum_probs=87.0
Q ss_pred CCccccccccHHHHHHHHhcc----CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHH
Q 003086 160 HTLVVGLEGDTRKIKDWLFEA----EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSM 235 (849)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 235 (849)
..+++|.++-+++|.+++... .....++.++|++|+|||++|+.+.+. ....| +-++++...+..++...
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~---~~i~~~~~~~~~~i~g~- 392 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKF---VRFSLGGVRDEAEIRGH- 392 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCCe---EEEeCCCcccHHHHcCC-
Confidence 345889999999998876432 223457999999999999999999873 33333 22333333333222110
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCH----HHHHHHHhcCC--------CC--------CCceEE
Q 003086 236 LRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDL----AWWRRIYEGLP--------KG--------KGSSII 295 (849)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----~~~~~l~~~l~--------~~--------~~s~il 295 (849)
.....+.....+.+.+...- .++-+|+||+++.... +....+...+. +. .+.-+|
T Consensus 393 ----~~~~~g~~~g~i~~~l~~~~-~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 393 ----RRTYVGAMPGRIIQGLKKAK-TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred ----CCceeCCCCchHHHHHHHhC-cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 01111223334444444432 3344889999966321 01122222221 11 122334
Q ss_pred EEecchh-hhhhccccccccccCCCCChhhHHHHHHHHh
Q 003086 296 ITTRNGK-VSQKMGVKKARMHFPKFLSEDDSWLLFRKIA 333 (849)
Q Consensus 296 vTtr~~~-v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 333 (849)
.||.... +....-.. ...+++.+++.++-.+++.++.
T Consensus 468 ~TtN~~~~i~~~L~~R-~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 468 ATANSIDTIPRPLLDR-MEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EecCCchhCCHHHhCC-eeEEecCCCCHHHHHHHHHHHH
Confidence 4554322 22222111 1478899999999988887765
No 174
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.54 E-value=2e-06 Score=94.62 Aligned_cols=108 Identities=24% Similarity=0.220 Sum_probs=53.4
Q ss_pred ccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCCh-hhhcccCCcEeeccCCCCccccCcccccccc
Q 003086 580 QTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPS-YVQSFIQLRALDVTHCGSLQYLPKGFGKLLN 658 (849)
Q Consensus 580 ~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~ 658 (849)
++.-+++|+.|||++| .+...- .+..|++|.+|||++|. +..+|. ....+. |..|++.+|.+. .-.+|.+|.+
T Consensus 182 SLqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN~l~--tL~gie~Lks 255 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNNALT--TLRGIENLKS 255 (1096)
T ss_pred HHHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccch-hccccccchhhhh-heeeeecccHHH--hhhhHHhhhh
Confidence 3444556666666666 443332 45566666666666554 333332 111222 666666665543 2234556666
Q ss_pred ccccCcccccCCCCCCCCCchhhhccccccceeeeecc
Q 003086 659 LEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTC 696 (849)
Q Consensus 659 L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 696 (849)
|+.|++..|...+ ......+..|..|+.|++.+|.
T Consensus 256 L~~LDlsyNll~~---hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSE---HSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhccchhHhhhhc---chhhhHHHHHHHHHHHhhcCCc
Confidence 6666655443221 1123334555566666666653
No 175
>PRK10536 hypothetical protein; Provisional
Probab=97.52 E-value=0.0006 Score=68.29 Aligned_cols=135 Identities=15% Similarity=0.148 Sum_probs=75.9
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEE----eCC-----ccCHHH-
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVS----VSQ-----TFTEEQ- 230 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~----~s~-----~~~~~~- 230 (849)
..+.++......+..++.+. ..|.++|++|.|||+||..+..+.-..+.|+.++-+. ..+ +-+.++
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK 130 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEK 130 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHH
Confidence 45677888888888888763 3899999999999999999876422233344333221 111 011211
Q ss_pred ---HHHHHHHHhcCCCCCCCHHHHHH--------HHHHHhcCccE---EEEEcCCCccCHHHHHHHHhcCCCCCCceEEE
Q 003086 231 ---IMRSMLRNLGDASAGDDRGELLR--------KINQYLLGKRY---LIVMDDVWGEDLAWWRRIYEGLPKGKGSSIII 296 (849)
Q Consensus 231 ---~~~~i~~~l~~~~~~~~~~~~~~--------~l~~~l~~~~~---LlVlDdv~~~~~~~~~~l~~~l~~~~~s~ilv 296 (849)
.+.-+.+.+..-......+.... .=..+++|+.+ +||+|++.+.+......+...+ +.+|++|+
T Consensus 131 ~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~--g~~sk~v~ 208 (262)
T PRK10536 131 FAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRL--GENVTVIV 208 (262)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhc--CCCCEEEE
Confidence 11122222211000001111110 00135566654 9999999987776665555444 45999999
Q ss_pred Eecch
Q 003086 297 TTRNG 301 (849)
Q Consensus 297 Ttr~~ 301 (849)
|--..
T Consensus 209 ~GD~~ 213 (262)
T PRK10536 209 NGDIT 213 (262)
T ss_pred eCChh
Confidence 87643
No 176
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.50 E-value=0.0027 Score=75.71 Aligned_cols=117 Identities=12% Similarity=0.207 Sum_probs=72.1
Q ss_pred CccccccccHHHHHHHHhcc-------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEA-------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMR 233 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 233 (849)
..++|-+..++.+...+... +....++.++|++|+|||+||+.+... . +...+.++.++..+..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~---- 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKH---- 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhcc----
Confidence 35788888888888877642 123457889999999999999999872 2 2334566555432211
Q ss_pred HHHHHhcCCCC--CC-CHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCC
Q 003086 234 SMLRNLGDASA--GD-DRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKG 289 (849)
Q Consensus 234 ~i~~~l~~~~~--~~-~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~ 289 (849)
.+...++.+.. +. ....+.+.++. ...-+|+||+++...++.++.+...+..+
T Consensus 525 ~~~~lig~~~gyvg~~~~~~l~~~~~~---~p~~VvllDEieka~~~~~~~Ll~~ld~g 580 (731)
T TIGR02639 525 TVSRLIGAPPGYVGFEQGGLLTEAVRK---HPHCVLLLDEIEKAHPDIYNILLQVMDYA 580 (731)
T ss_pred cHHHHhcCCCCCcccchhhHHHHHHHh---CCCeEEEEechhhcCHHHHHHHHHhhccC
Confidence 11112222211 11 22223333332 34469999999988888888888877653
No 177
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.50 E-value=0.0024 Score=68.55 Aligned_cols=156 Identities=17% Similarity=0.154 Sum_probs=91.6
Q ss_pred ccccccccHHH-HH-HHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHh
Q 003086 162 LVVGLEGDTRK-IK-DWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNL 239 (849)
Q Consensus 162 ~~vGr~~~~~~-l~-~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 239 (849)
.++|-...... +. .+-..++.....+.|+|..|.|||.|++.+.+ ....+......+.++ .+....+++..+
T Consensus 89 Fv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~----se~f~~~~v~a~ 162 (408)
T COG0593 89 FVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLT----SEDFTNDFVKAL 162 (408)
T ss_pred eeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEecc----HHHHHHHHHHHH
Confidence 45555443322 22 22233333467899999999999999999999 444455433333333 344555555444
Q ss_pred cCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCcc--CHHHHHHHHhcCCC--CCCceEEEEecc---------hhhhhh
Q 003086 240 GDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGE--DLAWWRRIYEGLPK--GKGSSIIITTRN---------GKVSQK 306 (849)
Q Consensus 240 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~~~l~~~l~~--~~~s~ilvTtr~---------~~v~~~ 306 (849)
.. .-.+.+++.. .-=++++||++.. .....+.+...|.. ..|..||+|++. ..+...
T Consensus 163 ~~--------~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR 232 (408)
T COG0593 163 RD--------NEMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSR 232 (408)
T ss_pred Hh--------hhHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHH
Confidence 32 2234445544 3348999999651 11112223333322 225589999964 233444
Q ss_pred ccccccccccCCCCChhhHHHHHHHHhhc
Q 003086 307 MGVKKARMHFPKFLSEDDSWLLFRKIAFA 335 (849)
Q Consensus 307 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~ 335 (849)
+... -.+++.+.+.+...+++.+.+..
T Consensus 233 ~~~G--l~~~I~~Pd~e~r~aiL~kka~~ 259 (408)
T COG0593 233 LEWG--LVVEIEPPDDETRLAILRKKAED 259 (408)
T ss_pred Hhce--eEEeeCCCCHHHHHHHHHHHHHh
Confidence 4443 48999999999999999997743
No 178
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.49 E-value=0.001 Score=75.73 Aligned_cols=179 Identities=13% Similarity=0.132 Sum_probs=96.3
Q ss_pred CCCCccccccccHHHHHHHHh---cc-------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccC
Q 003086 158 YDHTLVVGLEGDTRKIKDWLF---EA-------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFT 227 (849)
Q Consensus 158 ~~~~~~vGr~~~~~~l~~~L~---~~-------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 227 (849)
..-.+++|.++.++++.+++. .+ ....+-+.++|++|+|||+||+.+++.. . .-++.++.
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~-----~~~~~i~~--- 121 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--G-----VPFFSISG--- 121 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--C-----CCeeeccH---
Confidence 334578898887766655443 21 1234568899999999999999998742 1 12333331
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccC----------HHHHH----HHHhcCC---CCC
Q 003086 228 EEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGED----------LAWWR----RIYEGLP---KGK 290 (849)
Q Consensus 228 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------~~~~~----~l~~~l~---~~~ 290 (849)
.++.. .. .+.....+...+.......+.+|+|||++... ...+. .+...+. ...
T Consensus 122 -~~~~~----~~----~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~ 192 (495)
T TIGR01241 122 -SDFVE----MF----VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT 192 (495)
T ss_pred -HHHHH----HH----hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC
Confidence 11111 11 01122333444444445667899999995410 11122 2222221 122
Q ss_pred CceEEEEecchh-hhhhccc--cccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCch
Q 003086 291 GSSIIITTRNGK-VSQKMGV--KKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLP 361 (849)
Q Consensus 291 ~s~ilvTtr~~~-v~~~~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 361 (849)
+..||.||...+ +-..+.. .-...+++...+.++-.++|..+...... .+ ......+++.+.|.-
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~----~~--~~~l~~la~~t~G~s 260 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL----AP--DVDLKAVARRTPGFS 260 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC----Cc--chhHHHHHHhCCCCC
Confidence 445666675533 2111111 11257888889999999999887632211 11 122347888887744
No 179
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.49 E-value=0.006 Score=65.30 Aligned_cols=290 Identities=16% Similarity=0.144 Sum_probs=164.7
Q ss_pred ccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHH-HHHhcChhhhcccCceEEEEeCCc---cCHHHHHHHHHHHhcC
Q 003086 166 LEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIA-QKVFNDREIENWFERRMWVSVSQT---FTEEQIMRSMLRNLGD 241 (849)
Q Consensus 166 r~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~~~wv~~s~~---~~~~~~~~~i~~~l~~ 241 (849)
|.+..++|..||.... -..|.|.|+-|.||+.|+ .++.++.+. +..+.|.+- .+-..++..++.++|-
T Consensus 1 R~e~~~~L~~wL~e~~--~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~qvGY 72 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP--NTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLASQVGY 72 (431)
T ss_pred CchHHHHHHHHHhcCC--CeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHHhcCC
Confidence 5677899999998864 468999999999999999 777765322 555555432 2334555555555543
Q ss_pred C-----------------------CC--CCCHH-HHHHH-------HHH-------------------Hh---cCccEEE
Q 003086 242 A-----------------------SA--GDDRG-ELLRK-------INQ-------------------YL---LGKRYLI 266 (849)
Q Consensus 242 ~-----------------------~~--~~~~~-~~~~~-------l~~-------------------~l---~~~~~Ll 266 (849)
- .. ..+.+ ++.+. |++ +| ..++-+|
T Consensus 73 ~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVV 152 (431)
T PF10443_consen 73 FPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVV 152 (431)
T ss_pred CcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEE
Confidence 2 11 12222 22221 111 11 1236799
Q ss_pred EEcCCCc---cCHHHHHHHHh---cCCCCCCceEEEEecchhh----hhhccccccccccCCCCChhhHHHHHHHHhhcc
Q 003086 267 VMDDVWG---EDLAWWRRIYE---GLPKGKGSSIIITTRNGKV----SQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAA 336 (849)
Q Consensus 267 VlDdv~~---~~~~~~~~l~~---~l~~~~~s~ilvTtr~~~v----~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~ 336 (849)
|+|++-. .+...|+.+.+ .+-..+--+||++|-+... ...+.......+.|...+.+.|..+...+....
T Consensus 153 VIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 153 VIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDED 232 (431)
T ss_pred EEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccc
Confidence 9999854 11223333332 3334555688888877443 334444444788899999999999999997543
Q ss_pred CCC---------C--CC----CCchhHHHHHHHHhcCCchhHHHHHhhhhhcCCCChHHHHHHHHhhhhhhccCCchHHH
Q 003086 337 TEG---------E--CQ----HPSLEGVGKEIVEKCKGLPLAIKAVGGMMLYKPPTYNEWRRTADNFRDELAENDDSVMA 401 (849)
Q Consensus 337 ~~~---------~--~~----~~~~~~~~~~i~~~c~G~PLai~~~~~~l~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 401 (849)
... . .. ...........++..||-=.-+..+++.++......+.-..+.++-..++ ..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~qsa~eI-------~k 305 (431)
T PF10443_consen 233 TEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIISQSASEI-------RK 305 (431)
T ss_pred ccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-------HH
Confidence 110 0 00 01234455677888999999999999999886654444455544433222 11
Q ss_pred HHHH--h--hhCCChhhHHHHHHhccCCCCccccHHHHHHHhHhcCCCcCCCCCCHHHHHHHHHHhhhhccceEEecccc
Q 003086 402 SLQL--S--YDELPPYLKSCFLSFSVYPEDCVIRKEQLVYWWIGEGFVPQRNGRSSIEAGEDCFSGLTNRCLVEVVDKAY 477 (849)
Q Consensus 402 ~l~~--s--y~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~wia~g~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~~~ 477 (849)
..-. . -..++=...+....+-.+.+...++-.+++.-- .... .++..+..|.+..||.... .
T Consensus 306 ~fl~~~~~~~~~~~Wt~~QaW~LIk~Ls~~~~v~Y~~ll~~~----lFk~--------~~E~~L~aLe~aeLItv~~--~ 371 (431)
T PF10443_consen 306 MFLLDDSDDAKSLKWTREQAWYLIKLLSKNDEVPYNELLLSP----LFKG--------NDETALRALEQAELITVTT--D 371 (431)
T ss_pred HHhcCCCCcccCCCCCHHHHHHHHHHhccCCcCcHHHHHccc----ccCC--------CChHHHHHHHHCCcEEEEe--c
Confidence 1111 0 011111223334444444555556655554311 1111 1334688999999998876 3
Q ss_pred CCceeee
Q 003086 478 NKMISTC 484 (849)
Q Consensus 478 ~~~~~~~ 484 (849)
+|+...+
T Consensus 372 ~G~p~~I 378 (431)
T PF10443_consen 372 NGRPSTI 378 (431)
T ss_pred CCcCCee
Confidence 4444443
No 180
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.46 E-value=0.00012 Score=51.93 Aligned_cols=35 Identities=40% Similarity=0.584 Sum_probs=23.2
Q ss_pred CccceEeccCCCCCcccCccccCCCCCcEEeecccc
Q 003086 585 QHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQ 620 (849)
Q Consensus 585 ~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~ 620 (849)
++|++|+|++| .+..+|..+++|++|++|++++|.
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCC
Confidence 35777777777 667777667777777777777654
No 181
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.46 E-value=0.0016 Score=67.33 Aligned_cols=117 Identities=16% Similarity=0.184 Sum_probs=65.4
Q ss_pred HHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHH--------HHh--
Q 003086 170 TRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSML--------RNL-- 239 (849)
Q Consensus 170 ~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~--------~~l-- 239 (849)
++++..++..+ ..|.|.|++|+|||+||+.+.. ... ...+.+++....+..+++.... ..+
T Consensus 11 ~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~--~lg---~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~ 81 (262)
T TIGR02640 11 TSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVAR--KRD---RPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIH 81 (262)
T ss_pred HHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHH--HhC---CCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHH
Confidence 34444444443 3567899999999999999976 222 2345667766666555543221 000
Q ss_pred --cCCCC----CCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCC-----------------CCceEEE
Q 003086 240 --GDASA----GDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKG-----------------KGSSIII 296 (849)
Q Consensus 240 --~~~~~----~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------------~~s~ilv 296 (849)
..... ......+... . .+...+++|++...+.+.+..+...+..+ ++.+||+
T Consensus 82 ~~~~~~~~~~~~~~~g~l~~A----~-~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIa 156 (262)
T TIGR02640 82 NVVKLEDIVRQNWVDNRLTLA----V-REGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIF 156 (262)
T ss_pred HhhhhhcccceeecCchHHHH----H-HcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEE
Confidence 00000 0000111111 1 13469999999987777777777766431 1456788
Q ss_pred Eecc
Q 003086 297 TTRN 300 (849)
Q Consensus 297 Ttr~ 300 (849)
|+..
T Consensus 157 TsN~ 160 (262)
T TIGR02640 157 TSNP 160 (262)
T ss_pred eeCC
Confidence 8764
No 182
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.45 E-value=4.4e-05 Score=74.74 Aligned_cols=191 Identities=14% Similarity=0.094 Sum_probs=105.9
Q ss_pred cCCCCccceEeccCCCCCc-----ccCccccCCCCCcEEeecccc---CCccCC-------hhhhcccCCcEeeccCCCC
Q 003086 581 TGSLQHLSYLCLSNTHPLI-----HLPPSLKKLKNLQILDVSYCQ---NLKMLP-------SYVQSFIQLRALDVTHCGS 645 (849)
Q Consensus 581 ~~~l~~Lr~L~L~~~~~~~-----~lp~~i~~L~~L~~L~L~~~~---~~~~lp-------~~i~~l~~L~~L~l~~~~~ 645 (849)
+..+..+..++||+| .++ .+...|.+-.+|+..+++.-- ....+| +.+-+|++|+..+|+.|.+
T Consensus 26 l~~~d~~~evdLSGN-tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGN-TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCC-cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 334666777777777 333 233344455566666655211 111122 2344555666666665554
Q ss_pred ccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccch-------------HhhcCCCCCC
Q 003086 646 LQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEE-------------DALVNLRELQ 712 (849)
Q Consensus 646 ~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-------------~~l~~~~~L~ 712 (849)
....|.. ...-+++-++|.+|.+++|.+..+.. ......|.|+
T Consensus 105 g~~~~e~------------------------L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le 160 (388)
T COG5238 105 GSEFPEE------------------------LGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLE 160 (388)
T ss_pred CcccchH------------------------HHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCce
Confidence 3333322 11224455666666666665433221 1234578999
Q ss_pred eEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCCC------cCCCCCCCCCceEEEeeCCccccccccccCc-
Q 003086 713 FLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSPV------WLNPASLPMLRYLSVCSGNLSKMHDSFWGEN- 785 (849)
Q Consensus 713 ~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~- 785 (849)
......|++.+....-+...+..+.+|+.+.+..+... |. ..+...+.+|+.|+|..|-++..+..+++..
T Consensus 161 ~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIr--pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al 238 (388)
T COG5238 161 VVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIR--PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADAL 238 (388)
T ss_pred EEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcC--cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHh
Confidence 99988887654322223344566778998888654322 32 1222678999999999998887665555432
Q ss_pred -ccccccceeecccc
Q 003086 786 -NTVWKIEALLFESL 799 (849)
Q Consensus 786 -~fp~~L~~L~l~~l 799 (849)
.+| .|+.|.+..|
T Consensus 239 ~~W~-~lrEL~lnDC 252 (388)
T COG5238 239 CEWN-LLRELRLNDC 252 (388)
T ss_pred cccc-hhhhccccch
Confidence 344 4566666554
No 183
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.45 E-value=0.00091 Score=63.49 Aligned_cols=137 Identities=16% Similarity=0.110 Sum_probs=75.8
Q ss_pred ccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcC----hhh--------------hcccCceEEEEeCCc--
Q 003086 166 LEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFND----REI--------------ENWFERRMWVSVSQT-- 225 (849)
Q Consensus 166 r~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~----~~~--------------~~~f~~~~wv~~s~~-- 225 (849)
-++..+.+.+.+..+. -...+.++|+.|+||+++|..+.+. ... ........|+.-...
T Consensus 2 q~~~~~~L~~~~~~~~-l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGR-LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp -HHHHHHHHHHHHCTC---SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred cHHHHHHHHHHHHcCC-cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 3445556666665542 2346789999999999999888552 111 012233444433322
Q ss_pred -cCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEecchh-
Q 003086 226 -FTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITTRNGK- 302 (849)
Q Consensus 226 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTtr~~~- 302 (849)
..++++- ++...+..... .+++-++|+||++..+.+.+..++..+-.-+ ++.+|++|.+..
T Consensus 81 ~i~i~~ir-~i~~~~~~~~~---------------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~ 144 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSPS---------------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSK 144 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-T---------------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGG
T ss_pred hhhHHHHH-HHHHHHHHHHh---------------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHH
Confidence 2232222 33333322211 2456799999999988999999999988766 888888887643
Q ss_pred hhhhccccccccccCCCC
Q 003086 303 VSQKMGVKKARMHFPKFL 320 (849)
Q Consensus 303 v~~~~~~~~~~~~~l~~L 320 (849)
+........ ..+.+.++
T Consensus 145 il~TI~SRc-~~i~~~~l 161 (162)
T PF13177_consen 145 ILPTIRSRC-QVIRFRPL 161 (162)
T ss_dssp S-HHHHTTS-EEEEE---
T ss_pred ChHHHHhhc-eEEecCCC
Confidence 333333322 45555544
No 184
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.44 E-value=0.005 Score=74.65 Aligned_cols=131 Identities=18% Similarity=0.300 Sum_probs=79.2
Q ss_pred CccccccccHHHHHHHHhcc-------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEA-------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMR 233 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 233 (849)
..++|.+..++.+.+.+... .....++.++|++|+|||++|+.+... ....-...+.++++.......+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~~-- 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHSV-- 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccchH--
Confidence 46899999999999888652 112467889999999999999999763 2111123344444432221111
Q ss_pred HHHHHhcCCCC--C-CCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCCC------------CceEEEEe
Q 003086 234 SMLRNLGDASA--G-DDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK------------GSSIIITT 298 (849)
Q Consensus 234 ~i~~~l~~~~~--~-~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------~s~ilvTt 298 (849)
..-++.+.. + .....+...++. ....+|+||++...++..+..+...+..+. .+-||+||
T Consensus 641 --~~l~g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TS 715 (852)
T TIGR03346 641 --ARLIGAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTS 715 (852)
T ss_pred --HHhcCCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeC
Confidence 111222211 1 122233333332 334599999999888999998888875531 23377777
Q ss_pred cc
Q 003086 299 RN 300 (849)
Q Consensus 299 r~ 300 (849)
..
T Consensus 716 n~ 717 (852)
T TIGR03346 716 NL 717 (852)
T ss_pred Cc
Confidence 64
No 185
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.42 E-value=0.00023 Score=76.22 Aligned_cols=139 Identities=21% Similarity=0.277 Sum_probs=88.7
Q ss_pred hhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhc
Q 003086 552 TKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQS 631 (849)
Q Consensus 552 ~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~ 631 (849)
..+..++.++.|++++|.+. .+|. -..+|+.|.+++|..+..+|..+ ..+|+.|++++|..+..+|..
T Consensus 46 ~r~~~~~~l~~L~Is~c~L~----sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s--- 113 (426)
T PRK15386 46 PQIEEARASGRLYIKDCDIE----SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES--- 113 (426)
T ss_pred HHHHHhcCCCEEEeCCCCCc----ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc---
Confidence 34566789999999999876 5662 23469999999987888888765 358999999988777778764
Q ss_pred ccCCcEeeccCCCC--ccccCccccccccccccCcccccCCCCCCCCCchhhh-cc-ccccceeeeeccCcccchHhhcC
Q 003086 632 FIQLRALDVTHCGS--LQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELK-NL-TRLRKLGLQLTCGDEIEEDALVN 707 (849)
Q Consensus 632 l~~L~~L~l~~~~~--~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~-~l-~~L~~L~l~~~~~~~~~~~~l~~ 707 (849)
|+.|++.++.. ...+|. +|+.|.+...... .. ..+. .+ ++|+.|.+.+|..... +..+.
T Consensus 114 ---Le~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~---~~---~~lp~~LPsSLk~L~Is~c~~i~L-P~~LP- 176 (426)
T PRK15386 114 ---VRSLEIKGSATDSIKNVPN------GLTSLSINSYNPE---NQ---ARIDNLISPSLKTLSLTGCSNIIL-PEKLP- 176 (426)
T ss_pred ---cceEEeCCCCCcccccCcc------hHhheeccccccc---cc---cccccccCCcccEEEecCCCcccC-ccccc-
Confidence 55666655433 234454 4555554221100 00 0111 12 5799999988753322 22222
Q ss_pred CCCCCeEEEEeec
Q 003086 708 LRELQFLSISCFD 720 (849)
Q Consensus 708 ~~~L~~L~L~~~~ 720 (849)
.+|+.|.++.+.
T Consensus 177 -~SLk~L~ls~n~ 188 (426)
T PRK15386 177 -ESLQSITLHIEQ 188 (426)
T ss_pred -ccCcEEEecccc
Confidence 689999997653
No 186
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.41 E-value=0.00083 Score=66.99 Aligned_cols=110 Identities=18% Similarity=0.300 Sum_probs=60.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHH-HHhcCCCCCCCHHH----HHHHHHHHh
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSML-RNLGDASAGDDRGE----LLRKINQYL 259 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~-~~l~~~~~~~~~~~----~~~~l~~~l 259 (849)
-.++|+|..|.|||||+..+..+ ....|.++++++-.......+. +- ..+......+..+. ..+.+.+..
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t~~~n~~~~~~---i~p~~i~~~~~~e~le~~l~~~k~~I~k~~ 88 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLITPEYNNEYYKY---IWPDHIFKVFDKEELEYILIRQKEKIEKYI 88 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEecCCchhhhhh---cchhhccccccHHHHHHHHHHHHHHHHHHh
Confidence 35789999999999999999874 6678877776644322111111 11 11111111111121 112222222
Q ss_pred ----cCc---cEEEEEcCCCccCHHHHHHHHhcCCCCC--CceEEEEecc
Q 003086 260 ----LGK---RYLIVMDDVWGEDLAWWRRIYEGLPKGK--GSSIIITTRN 300 (849)
Q Consensus 260 ----~~~---~~LlVlDdv~~~~~~~~~~l~~~l~~~~--~s~ilvTtr~ 300 (849)
.++ ++|||+||+-+.. ..-..+...+..+. +..++++++.
T Consensus 89 ~k~~~~k~~~~~LiIlDD~~~~~-~k~~~l~~~~~~gRH~~is~i~l~Q~ 137 (241)
T PF04665_consen 89 KKSPQKKNNPRFLIILDDLGDKK-LKSKILRQFFNNGRHYNISIIFLSQS 137 (241)
T ss_pred hhhcccCCCCCeEEEEeCCCCch-hhhHHHHHHHhcccccceEEEEEeee
Confidence 233 8999999996521 11123555665555 6667777765
No 187
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.39 E-value=7.8e-05 Score=86.71 Aligned_cols=152 Identities=26% Similarity=0.269 Sum_probs=83.8
Q ss_pred CccceEeccCCCCCcc-cCcccc-CCCCCcEEeeccccC-CccCChhhhcccCCcEeeccCCCCccccCccccccccccc
Q 003086 585 QHLSYLCLSNTHPLIH-LPPSLK-KLKNLQILDVSYCQN-LKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEV 661 (849)
Q Consensus 585 ~~Lr~L~L~~~~~~~~-lp~~i~-~L~~L~~L~L~~~~~-~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 661 (849)
.+|++|++++...+.. =|..++ .||+|++|.+++-.. ...+-.-..++++|+.||++++++. .+ .+++.|++||.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHH
Confidence 4555566555422111 112222 366667766663221 1222233456777888888877765 23 67788888888
Q ss_pred cCcccccCCCCCCCCCchhhhccccccceeeeeccCcccc---h---HhhcCCCCCCeEEEEeecCCCCchhhhccccCC
Q 003086 662 LLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIE---E---DALVNLRELQFLSISCFDSHGSDLVAKIDELYP 735 (849)
Q Consensus 662 L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~---~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~ 735 (849)
|.+.+.... ....+.++-+|++|+.||++........ . +.-..+|+|+.|+.+.+.+...- .. ..+..
T Consensus 200 L~mrnLe~e---~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~-le--~ll~s 273 (699)
T KOG3665|consen 200 LSMRNLEFE---SYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI-LE--ELLNS 273 (699)
T ss_pred HhccCCCCC---chhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH-HH--HHHHh
Confidence 876554322 2234557778888999998876322211 1 33445788999988876544321 11 12234
Q ss_pred CCCCCeEEE
Q 003086 736 PEQLDELSL 744 (849)
Q Consensus 736 ~~~L~~L~l 744 (849)
+|+|+.+..
T Consensus 274 H~~L~~i~~ 282 (699)
T KOG3665|consen 274 HPNLQQIAA 282 (699)
T ss_pred CccHhhhhh
Confidence 566665543
No 188
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.39 E-value=0.0016 Score=78.48 Aligned_cols=130 Identities=17% Similarity=0.236 Sum_probs=76.5
Q ss_pred CccccccccHHHHHHHHhcc-------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEA-------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMR 233 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 233 (849)
..++|.+..++.+...+... +....++.++|+.|+|||+||+.+.+. ....-...+.+.++.-.. .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~-~---- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFME-K---- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhh-h----
Confidence 46889999999988877642 122357889999999999999999762 211112334444443211 1
Q ss_pred HHHHHhcCCCC---CCC-HHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCCC------------CceEEEE
Q 003086 234 SMLRNLGDASA---GDD-RGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK------------GSSIIIT 297 (849)
Q Consensus 234 ~i~~~l~~~~~---~~~-~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------~s~ilvT 297 (849)
.....+.+..+ +.+ ...+...++ ....-+|+|||+...+...+..+...+..+. .+-||+|
T Consensus 641 ~~~~~LiG~~pgy~g~~~~g~l~~~v~---~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~T 717 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEEGGYLTEAVR---RRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMT 717 (857)
T ss_pred hhHHHHhCCCCcccccchhHHHHHHHH---hCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEe
Confidence 11222222211 111 112222222 1233699999998877888888888775431 2237777
Q ss_pred ecc
Q 003086 298 TRN 300 (849)
Q Consensus 298 tr~ 300 (849)
|..
T Consensus 718 SN~ 720 (857)
T PRK10865 718 SNL 720 (857)
T ss_pred CCc
Confidence 765
No 189
>PRK12377 putative replication protein; Provisional
Probab=97.37 E-value=0.00083 Score=68.05 Aligned_cols=100 Identities=18% Similarity=0.169 Sum_probs=57.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCcc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKR 263 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 263 (849)
...+.|+|.+|+|||+||..+++. .......++++++. +++..+-..... ....... + +.+ .+-
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~~---~~~~~~~---l-~~l-~~~ 164 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYDN---GQSGEKF---L-QEL-CKV 164 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHhc---cchHHHH---H-HHh-cCC
Confidence 457899999999999999999984 33344446777554 445544443321 1112222 2 222 345
Q ss_pred EEEEEcCCCccCHHHH--HHHHhcCCC--CCCceEEEEec
Q 003086 264 YLIVMDDVWGEDLAWW--RRIYEGLPK--GKGSSIIITTR 299 (849)
Q Consensus 264 ~LlVlDdv~~~~~~~~--~~l~~~l~~--~~~s~ilvTtr 299 (849)
-||||||+.......| +.+...+.. ....-+||||.
T Consensus 165 dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSN 204 (248)
T PRK12377 165 DLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTN 204 (248)
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 6999999954322233 334333332 22345788886
No 190
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.37 E-value=0.00071 Score=68.37 Aligned_cols=115 Identities=17% Similarity=0.244 Sum_probs=63.4
Q ss_pred HHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHH
Q 003086 171 RKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGE 250 (849)
Q Consensus 171 ~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~ 250 (849)
..+.++......+...+.++|.+|+|||+||..+++. ....-..+++++ ..+++..+-..... ...+...
T Consensus 86 ~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it------~~~l~~~l~~~~~~--~~~~~~~ 155 (244)
T PRK07952 86 SKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIIT------VADIMSAMKDTFSN--SETSEEQ 155 (244)
T ss_pred HHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEE------HHHHHHHHHHHHhh--ccccHHH
Confidence 3344444332223457899999999999999999984 322233455664 34555555444321 1112222
Q ss_pred HHHHHHHHhcCccEEEEEcCCCccCHHHHHH--HHhcCCC--CCCceEEEEecc
Q 003086 251 LLRKINQYLLGKRYLIVMDDVWGEDLAWWRR--IYEGLPK--GKGSSIIITTRN 300 (849)
Q Consensus 251 ~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~--l~~~l~~--~~~s~ilvTtr~ 300 (849)
+. +.+. +.=+|||||+.......|+. +...+.. .....+||||.-
T Consensus 156 ~l----~~l~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 156 LL----NDLS-NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred HH----HHhc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 22 3343 34588999997654455553 3333321 224567888863
No 191
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0046 Score=63.74 Aligned_cols=179 Identities=16% Similarity=0.171 Sum_probs=104.4
Q ss_pred CCCccccccccHHHHHHHHhcc----C-------CCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccC
Q 003086 159 DHTLVVGLEGDTRKIKDWLFEA----E-------EGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFT 227 (849)
Q Consensus 159 ~~~~~vGr~~~~~~l~~~L~~~----~-------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 227 (849)
.-.++=|.++.+++|.+.+.-+ + +.++=|.++|++|.|||-||+.|++. ....| +-|..+
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----IrvvgS-- 219 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVGS-- 219 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEeccH--
Confidence 3346778999999998876432 1 25677899999999999999999994 43333 333321
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhc-CccEEEEEcCCCc-----------cCHHHHHHHHhcCC------CC
Q 003086 228 EEQIMRSMLRNLGDASAGDDRGELLRKINQYLL-GKRYLIVMDDVWG-----------EDLAWWRRIYEGLP------KG 289 (849)
Q Consensus 228 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~-----------~~~~~~~~l~~~l~------~~ 289 (849)
++++..-+ +-..+...+.+.-+ ..+.+|++|.++. .+.+....+...|. ..
T Consensus 220 ------ElVqKYiG-----EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~ 288 (406)
T COG1222 220 ------ELVQKYIG-----EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR 288 (406)
T ss_pred ------HHHHHHhc-----cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC
Confidence 22222222 22344455555443 4679999999843 22333444443332 22
Q ss_pred CCceEEEEecchhhhhhc--c-ccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhH
Q 003086 290 KGSSIIITTRNGKVSQKM--G-VKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLA 363 (849)
Q Consensus 290 ~~s~ilvTtr~~~v~~~~--~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLa 363 (849)
..-|||..|...++.... . ..-.+.+++..-+.+.-.++|+-++-.-.- ...-++ +.+++.|.|.-=|
T Consensus 289 ~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l--~~dvd~----e~la~~~~g~sGA 359 (406)
T COG1222 289 GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNL--ADDVDL----ELLARLTEGFSGA 359 (406)
T ss_pred CCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccC--ccCcCH----HHHHHhcCCCchH
Confidence 377999999765543321 1 111257788766666677778777633221 122233 3566667666543
No 192
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.36 E-value=0.0038 Score=68.48 Aligned_cols=119 Identities=17% Similarity=0.204 Sum_probs=74.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEE
Q 003086 186 AIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYL 265 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 265 (849)
++.|+|+-++||||+++.+... .... .+++..-+......-+. +....+.+.-..++.+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~----------------d~~~~~~~~~~~~~~y 97 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELL----------------DLLRAYIELKEREKSY 97 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHH----------------HHHHHHHHhhccCCce
Confidence 9999999999999999776552 1111 45554432211111111 1111111111227789
Q ss_pred EEEcCCCccCHHHHHHHHhcCCCCCCceEEEEecchhh-----hhhccccccccccCCCCChhhHHHH
Q 003086 266 IVMDDVWGEDLAWWRRIYEGLPKGKGSSIIITTRNGKV-----SQKMGVKKARMHFPKFLSEDDSWLL 328 (849)
Q Consensus 266 lVlDdv~~~~~~~~~~l~~~l~~~~~s~ilvTtr~~~v-----~~~~~~~~~~~~~l~~L~~~e~~~l 328 (849)
++||.|.. ...|......+.+....+|++|+.+..+ +...... ...+++-|||-.|...+
T Consensus 98 ifLDEIq~--v~~W~~~lk~l~d~~~~~v~itgsss~ll~~~~~~~L~GR-~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 98 IFLDEIQN--VPDWERALKYLYDRGNLDVLITGSSSSLLSKEISESLAGR-GKDLELYPLSFREFLKL 162 (398)
T ss_pred EEEecccC--chhHHHHHHHHHccccceEEEECCchhhhccchhhhcCCC-ceeEEECCCCHHHHHhh
Confidence 99999998 7778888888776552289999887543 3333322 26888999999988664
No 193
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0012 Score=73.93 Aligned_cols=161 Identities=18% Similarity=0.186 Sum_probs=96.0
Q ss_pred CCCccccccccHHHHHHHHhc----cCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHH
Q 003086 159 DHTLVVGLEGDTRKIKDWLFE----AEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRS 234 (849)
Q Consensus 159 ~~~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 234 (849)
-+.+-+|.++-+++|+++|.- +.-.-+++++||+||+|||+|++.+++ .....| +-++++.-.|..++-.
T Consensus 321 Ld~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEIRG- 394 (782)
T COG0466 321 LDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEIRG- 394 (782)
T ss_pred hcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHhcc-
Confidence 345678999999999999853 223457999999999999999999988 444444 4455665555444311
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCcc------CHHHHHHHHhcCC------------CCC--CceE
Q 003086 235 MLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGE------DLAWWRRIYEGLP------------KGK--GSSI 294 (849)
Q Consensus 235 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~------~~~~~~~l~~~l~------------~~~--~s~i 294 (849)
-....-+.-...+.+.+++ .+.++-+++||.++.. ++. ..+++.|. +-+ =|+|
T Consensus 395 ----HRRTYIGamPGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPa--SALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 395 ----HRRTYIGAMPGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPA--SALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred ----ccccccccCChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChH--HHHHhhcCHhhcCchhhccccCccchhhe
Confidence 0111113344455555544 3456789999998541 111 12222221 111 3555
Q ss_pred -EEEecc-hh-hhh-hccccccccccCCCCChhhHHHHHHHHhh
Q 003086 295 -IITTRN-GK-VSQ-KMGVKKARMHFPKFLSEDDSWLLFRKIAF 334 (849)
Q Consensus 295 -lvTtr~-~~-v~~-~~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 334 (849)
.|||-+ -+ +.. .+... .++++.+.+++|-.++-+++..
T Consensus 468 mFiaTANsl~tIP~PLlDRM--EiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 468 MFIATANSLDTIPAPLLDRM--EVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred EEEeecCccccCChHHhcce--eeeeecCCChHHHHHHHHHhcc
Confidence 445543 11 111 11111 5899999999999998888863
No 194
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.34 E-value=0.007 Score=64.55 Aligned_cols=179 Identities=10% Similarity=0.054 Sum_probs=102.1
Q ss_pred HHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcCh---hhhcccCc-----eEEEEeCCccCHHHHHHHHHHHhcC
Q 003086 170 TRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDR---EIENWFER-----RMWVSVSQTFTEEQIMRSMLRNLGD 241 (849)
Q Consensus 170 ~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~---~~~~~f~~-----~~wv~~s~~~~~~~~~~~i~~~l~~ 241 (849)
-+++...+.++. -...+.+.|+.|+||+++|..+...- .-...-.| .-++.....+|+..+.. ..
T Consensus 11 ~~~l~~~~~~~r-l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p------~~ 83 (334)
T PRK07993 11 YEQLVGSYQAGR-GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTP------EK 83 (334)
T ss_pred HHHHHHHHHcCC-cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEec------cc
Confidence 345555555432 34678899999999999998874420 00000000 00000111111110000 00
Q ss_pred CCCCCCHHHHHHHHHHHh-----cCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEecc-hhhhhhcccccccc
Q 003086 242 ASAGDDRGELLRKINQYL-----LGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITTRN-GKVSQKMGVKKARM 314 (849)
Q Consensus 242 ~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTtr~-~~v~~~~~~~~~~~ 314 (849)
....-..+++.+ +.+.+ .+++-++|+|+++..+...-..+...+.+-+ ++.+|++|.+ ..+...+.+.. +.
T Consensus 84 ~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRC-q~ 161 (334)
T PRK07993 84 GKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRC-RL 161 (334)
T ss_pred ccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc-cc
Confidence 000112333333 22222 3567799999999877888889999997766 6666655554 55555544433 67
Q ss_pred ccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHH
Q 003086 315 HFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAV 367 (849)
Q Consensus 315 ~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 367 (849)
+.+.+++.+++.+.+.+... ...+.+..++..++|.|..+..+
T Consensus 162 ~~~~~~~~~~~~~~L~~~~~----------~~~~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 162 HYLAPPPEQYALTWLSREVT----------MSQDALLAALRLSAGAPGAALAL 204 (334)
T ss_pred ccCCCCCHHHHHHHHHHccC----------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 89999999999988865420 01334667899999999755443
No 195
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.33 E-value=0.00043 Score=65.88 Aligned_cols=131 Identities=16% Similarity=0.189 Sum_probs=70.2
Q ss_pred cccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCC
Q 003086 163 VVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDA 242 (849)
Q Consensus 163 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 242 (849)
++|.+..++++++.+..-......|.|+|..|+||+.+|+.+.+...- .-...+-|+++.- +.+.+-.++.-.-...
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r--~~~pfi~vnc~~~-~~~~~e~~LFG~~~~~ 77 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPR--KNGPFISVNCAAL-PEELLESELFGHEKGA 77 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTT--TTS-EEEEETTTS--HHHHHHHHHEBCSSS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhc--ccCCeEEEehhhh-hcchhhhhhhcccccc
Confidence 478888888888887764333356779999999999999999884211 1112234444422 3333333333221111
Q ss_pred CCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCC-----------C-CceEEEEecc
Q 003086 243 SAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKG-----------K-GSSIIITTRN 300 (849)
Q Consensus 243 ~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~-~s~ilvTtr~ 300 (849)
..+.... ..-.+.. -..=-|+||++..-.......+...+..+ . ..|||.||..
T Consensus 78 ~~~~~~~-~~G~l~~---A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 78 FTGARSD-KKGLLEQ---ANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp STTTSSE-BEHHHHH---TTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred ccccccc-cCCceee---ccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 1111100 0011222 12237899999987777777777665421 1 5678888874
No 196
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.32 E-value=0.002 Score=69.41 Aligned_cols=142 Identities=15% Similarity=0.081 Sum_probs=86.6
Q ss_pred ccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhc-------------------ccCceEEEEe
Q 003086 162 LVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIEN-------------------WFERRMWVSV 222 (849)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~wv~~ 222 (849)
.++|-+....++..+..........+.++|++|+||||+|..+.+.-.-.. ..+.+..+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 356777788888888875443444699999999999999999876311000 1123444444
Q ss_pred CCccC---HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEe
Q 003086 223 SQTFT---EEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITT 298 (849)
Q Consensus 223 s~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTt 298 (849)
+.... ..+..+++.+....... .++.-++++|+++..+.+.-..++..+...+ .+.+|++|
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~~---------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESPL---------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCCC---------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEc
Confidence 43333 23333333333322111 2567899999999877777777777777655 77777777
Q ss_pred c-chhhhhhccccccccccCCC
Q 003086 299 R-NGKVSQKMGVKKARMHFPKF 319 (849)
Q Consensus 299 r-~~~v~~~~~~~~~~~~~l~~ 319 (849)
. ...+.......+ ..+.+.+
T Consensus 147 n~~~~il~tI~SRc-~~i~f~~ 167 (325)
T COG0470 147 NDPSKILPTIRSRC-QRIRFKP 167 (325)
T ss_pred CChhhccchhhhcc-eeeecCC
Confidence 6 344444333333 4566666
No 197
>PRK08181 transposase; Validated
Probab=97.32 E-value=0.00033 Score=71.89 Aligned_cols=99 Identities=16% Similarity=0.126 Sum_probs=55.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccE
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRY 264 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 264 (849)
..+.|+|++|+|||.||..+.+. .......+.|+++ .+++..+..... ..+.......+ .+.=
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~------~~L~~~l~~a~~----~~~~~~~l~~l-----~~~d 169 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT------TDLVQKLQVARR----ELQLESAIAKL-----DKFD 169 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH------HHHHHHHHHHHh----CCcHHHHHHHH-----hcCC
Confidence 45899999999999999999873 3233334566653 345555533221 11222222222 2335
Q ss_pred EEEEcCCCccCHHHH--HHHHhcCCCCC-CceEEEEecc
Q 003086 265 LIVMDDVWGEDLAWW--RRIYEGLPKGK-GSSIIITTRN 300 (849)
Q Consensus 265 LlVlDdv~~~~~~~~--~~l~~~l~~~~-~s~ilvTtr~ 300 (849)
||||||+.......| +.+...+.... +..+||||..
T Consensus 170 LLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~ 208 (269)
T PRK08181 170 LLILDDLAYVTKDQAETSVLFELISARYERRSILITANQ 208 (269)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 999999965322222 23333333211 3468888874
No 198
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.29 E-value=0.0028 Score=75.89 Aligned_cols=180 Identities=16% Similarity=0.162 Sum_probs=96.2
Q ss_pred CCCccccccccHHHHHHHHhcc-----------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccC
Q 003086 159 DHTLVVGLEGDTRKIKDWLFEA-----------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFT 227 (849)
Q Consensus 159 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 227 (849)
.-.++.|.+..+++|.+++..+ -...+.|.++|++|+|||+||+.+++. .... ++.++..
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~-----~i~i~~~-- 246 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAY-----FISINGP-- 246 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCe-----EEEEecH--
Confidence 3346889999999998876431 023456889999999999999999873 2222 2233211
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccC-----------HHHHHHHHhcCCC--CCCceE
Q 003086 228 EEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGED-----------LAWWRRIYEGLPK--GKGSSI 294 (849)
Q Consensus 228 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-----------~~~~~~l~~~l~~--~~~s~i 294 (849)
++. .. ..+.....+...+.......+.+|+||+++... ......+...+.. ..+..+
T Consensus 247 --~i~----~~----~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 247 --EIM----SK----YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred --HHh----cc----cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 111 10 111222333333444445667899999985410 1122334443332 123334
Q ss_pred EE-Eecch-hhhhhccc--cccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhH
Q 003086 295 II-TTRNG-KVSQKMGV--KKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLA 363 (849)
Q Consensus 295 lv-Ttr~~-~v~~~~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLa 363 (849)
+| ||... .+...+.. .....+.+...+.++..+++....-... .. .......+++.+.|..-+
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~----l~--~d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMP----LA--EDVDLDKLAEVTHGFVGA 383 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCC----Cc--cccCHHHHHHhCCCCCHH
Confidence 44 44432 22221111 1114577777888888888886542111 00 112246688888887543
No 199
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.28 E-value=0.0061 Score=64.80 Aligned_cols=94 Identities=13% Similarity=0.156 Sum_probs=66.4
Q ss_pred CccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEE-EecchhhhhhccccccccccCCCCChhhHHHHHHHHhhccCC
Q 003086 261 GKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIII-TTRNGKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATE 338 (849)
Q Consensus 261 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilv-Ttr~~~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~ 338 (849)
+++-++|+|+++..+...+..+...+-.-+ ++.+|+ |++...+...+.... ..+.+.+++.++..+.+....
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~~~----- 204 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAAQG----- 204 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHHcC-----
Confidence 456699999999888899999999987655 665554 445455555444433 688999999999999887642
Q ss_pred CCCCCCchhHHHHHHHHhcCCchhHHHHHh
Q 003086 339 GECQHPSLEGVGKEIVEKCKGLPLAIKAVG 368 (849)
Q Consensus 339 ~~~~~~~~~~~~~~i~~~c~G~PLai~~~~ 368 (849)
..+ ...++..++|.|..+..+.
T Consensus 205 ---~~~-----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 205 ---VAD-----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred ---CCh-----HHHHHHHcCCCHHHHHHHH
Confidence 011 1235778899998665443
No 200
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.01 Score=68.70 Aligned_cols=115 Identities=21% Similarity=0.350 Sum_probs=74.5
Q ss_pred CccccccccHHHHHHHHhcc-------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhccc---CceEEEEeCCccCHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEA-------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWF---ERRMWVSVSQTFTEEQ 230 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~s~~~~~~~ 230 (849)
..++|-++.++.+.+.+... +.+..+...+|+.|||||-||+.+... -| +..+-+..|+...
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~DMSEy~E--- 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRIDMSEYME--- 562 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceeechHHHHH---
Confidence 35789999999888877542 335678888999999999999998762 23 2334443332211
Q ss_pred HHHHHHHHhcCCCC---C-CCHHHHHHHHHHHhcCccE-EEEEcCCCccCHHHHHHHHhcCCCC
Q 003086 231 IMRSMLRNLGDASA---G-DDRGELLRKINQYLLGKRY-LIVMDDVWGEDLAWWRRIYEGLPKG 289 (849)
Q Consensus 231 ~~~~i~~~l~~~~~---~-~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~~~~~~~~l~~~l~~~ 289 (849)
+.-++.|-+..+ + +.-..+.+ ..+.++| +|.||++....++.++.+...|-+|
T Consensus 563 --kHsVSrLIGaPPGYVGyeeGG~LTE----aVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 563 --KHSVSRLIGAPPGYVGYEEGGQLTE----AVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred --HHHHHHHhCCCCCCceeccccchhH----hhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 122233333333 1 23333443 3445665 9999999988899999998888764
No 201
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.26 E-value=0.001 Score=72.74 Aligned_cols=151 Identities=13% Similarity=0.191 Sum_probs=84.2
Q ss_pred ccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHH-HHHhc
Q 003086 162 LVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSM-LRNLG 240 (849)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i-~~~l~ 240 (849)
.++||++.++.+...+..+. .|.|.|++|+|||++|+.+.........|.. +.+.-. .+.+++..+ +....
T Consensus 21 ~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~---~~~~ft-tp~DLfG~l~i~~~~ 92 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFAFQNARAFEY---LMTRFS-TPEEVFGPLSIQALK 92 (498)
T ss_pred hccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHHHhcccCccee---eeeeec-CcHHhcCcHHHhhhh
Confidence 48899999999998887754 6889999999999999999773211122321 111100 122322211 11110
Q ss_pred CCCCCCCHHHHHHHHHHHhcC---ccEEEEEcCCCccCHHHHHHHHhcCCCCC----------CceEEEEecchhhhh--
Q 003086 241 DASAGDDRGELLRKINQYLLG---KRYLIVMDDVWGEDLAWWRRIYEGLPKGK----------GSSIIITTRNGKVSQ-- 305 (849)
Q Consensus 241 ~~~~~~~~~~~~~~l~~~l~~---~~~LlVlDdv~~~~~~~~~~l~~~l~~~~----------~s~ilvTtr~~~v~~-- 305 (849)
. . ..+.....| ..-++++|+++.........+...+.... ..++++++.+ .+..
T Consensus 93 ~------~----g~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN-~LPE~g 161 (498)
T PRK13531 93 D------E----GRYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASN-ELPEAD 161 (498)
T ss_pred h------c----CchhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECC-CCcccC
Confidence 0 0 001111112 12289999999988888888877774321 2345555554 2221
Q ss_pred -----hccccccccccCCCCChhh-HHHHHHHH
Q 003086 306 -----KMGVKKARMHFPKFLSEDD-SWLLFRKI 332 (849)
Q Consensus 306 -----~~~~~~~~~~~l~~L~~~e-~~~lf~~~ 332 (849)
....- ...+.+.+++.++ -.+++...
T Consensus 162 ~~leAL~DRF-liri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 162 SSLEALYDRM-LIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CchHHhHhhE-EEEEECCCCCchHHHHHHHHcc
Confidence 11111 1467788887544 47777654
No 202
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.26 E-value=0.0016 Score=77.33 Aligned_cols=162 Identities=17% Similarity=0.163 Sum_probs=91.7
Q ss_pred CCccccccccHHHHHHHHhcc----CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHH
Q 003086 160 HTLVVGLEGDTRKIKDWLFEA----EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSM 235 (849)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 235 (849)
+.+.+|.++-+++|+++|... .....++.++|++|+||||+|+.+... ....| +-++++...+..++...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~---~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKY---VRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCE---EEEEcCCCCCHHHhccch
Confidence 456899999999999888642 223457999999999999999999862 32222 223444433433222111
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHH----HHHHHhcCCC---------------C-CCceEE
Q 003086 236 LRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAW----WRRIYEGLPK---------------G-KGSSII 295 (849)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~----~~~l~~~l~~---------------~-~~s~il 295 (849)
... .+.....+.+.+... ....-+++||+++...... .+.+...+.. . ++.-+|
T Consensus 396 ~~~-----~g~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i 469 (784)
T PRK10787 396 RTY-----IGSMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFV 469 (784)
T ss_pred hcc-----CCCCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEE
Confidence 111 112223344444332 2234578999996632211 2344443321 1 133345
Q ss_pred EEecchhhhhhccccccccccCCCCChhhHHHHHHHHh
Q 003086 296 ITTRNGKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIA 333 (849)
Q Consensus 296 vTtr~~~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 333 (849)
.|+.+..+....-... ..+++.+++.+|-.++..++.
T Consensus 470 ~TaN~~~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 470 ATSNSMNIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EcCCCCCCCHHHhcce-eeeecCCCCHHHHHHHHHHhh
Confidence 5554433322222211 578899999999999988876
No 203
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.26 E-value=0.0011 Score=63.67 Aligned_cols=102 Identities=17% Similarity=0.181 Sum_probs=63.3
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhc-ccCceEEEEeCCccCHHHHHHHHHHHh
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIEN-WFERRMWVSVSQTFTEEQIMRSMLRNL 239 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~f~~~~wv~~s~~~~~~~~~~~i~~~l 239 (849)
.++||-++.++++.-...+++ .+-+.|.||+|+||||-+..+++.- ... .-+.+.=.+.|+..
T Consensus 27 ~dIVGNe~tv~rl~via~~gn--mP~liisGpPG~GKTTsi~~LAr~L-LG~~~ke~vLELNASdeR------------- 90 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGN--MPNLIISGPPGTGKTTSILCLAREL-LGDSYKEAVLELNASDER------------- 90 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCC--CCceEeeCCCCCchhhHHHHHHHHH-hChhhhhHhhhccCcccc-------------
Confidence 479999999988877666554 7788999999999999777766521 111 11223333333332
Q ss_pred cCCCCCCCHHHHHHHHHHHh-------cCccEEEEEcCCCccCHHHHHHHHhc
Q 003086 240 GDASAGDDRGELLRKINQYL-------LGKRYLIVMDDVWGEDLAWWRRIYEG 285 (849)
Q Consensus 240 ~~~~~~~~~~~~~~~l~~~l-------~~~~~LlVlDdv~~~~~~~~~~l~~~ 285 (849)
..+-....++.+- .++.-++|||.+++.+......++..
T Consensus 91 -------GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRt 136 (333)
T KOG0991|consen 91 -------GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRT 136 (333)
T ss_pred -------ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHH
Confidence 2333333333322 24556899999988665555555543
No 204
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.26 E-value=0.0011 Score=64.55 Aligned_cols=131 Identities=20% Similarity=0.242 Sum_probs=65.0
Q ss_pred cccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeC----Cc--cCHHH-------H
Q 003086 165 GLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVS----QT--FTEEQ-------I 231 (849)
Q Consensus 165 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s----~~--~~~~~-------~ 231 (849)
.+..+-...++.|.. ..++.+.|++|.|||.||....-+.-..+.|+.++++--. +. +-+-+ .
T Consensus 4 p~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~ 79 (205)
T PF02562_consen 4 PKNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPY 79 (205)
T ss_dssp --SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TT
T ss_pred CCCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHH
Confidence 344555666777773 3589999999999999998887654445778877776321 11 11111 1
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHH------HHHhcCc---cEEEEEcCCCccCHHHHHHHHhcCCCCCCceEEEEecch
Q 003086 232 MRSMLRNLGDASAGDDRGELLRKI------NQYLLGK---RYLIVMDDVWGEDLAWWRRIYEGLPKGKGSSIIITTRNG 301 (849)
Q Consensus 232 ~~~i~~~l~~~~~~~~~~~~~~~l------~~~l~~~---~~LlVlDdv~~~~~~~~~~l~~~l~~~~~s~ilvTtr~~ 301 (849)
+.-+.+.+..-......+.+.+.= ..+++|+ ..+||+|++.+.+.+++..+..-+ +.+||||++--..
T Consensus 80 ~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~--g~~skii~~GD~~ 156 (205)
T PF02562_consen 80 LRPIYDALEELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI--GEGSKIIITGDPS 156 (205)
T ss_dssp THHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB---TT-EEEEEE---
T ss_pred HHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc--CCCcEEEEecCce
Confidence 111222222111111222222110 1233453 469999999997777777765443 5599999998653
No 205
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.25 E-value=0.0017 Score=71.95 Aligned_cols=189 Identities=15% Similarity=0.045 Sum_probs=114.8
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhc
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLG 240 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 240 (849)
++++|-+.-.+.|...+..+. -.......|+-|+||||+|+-+...- .|.-| ....++..=...+.|...-.
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~Akal------NC~~~-~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKAL------NCENG-PTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHh------cCCCC-CCCCcchhhhhhHhhhcCCc
Confidence 357999999999988887753 22345678999999999999886521 01111 11111111112223322200
Q ss_pred CCC------CCCCHHHHHHHHHHHh----cCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEec-chhhhhhcc
Q 003086 241 DAS------AGDDRGELLRKINQYL----LGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITTR-NGKVSQKMG 308 (849)
Q Consensus 241 ~~~------~~~~~~~~~~~l~~~l----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTtr-~~~v~~~~~ 308 (849)
... .....++..+.+.+.. .++.=+.|+|+|+-.....|..+...+..-+ +.+.|+.|. ...+....-
T Consensus 88 ~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIl 167 (515)
T COG2812 88 IDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTIL 167 (515)
T ss_pred ccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhh
Confidence 000 0112333333222221 4566699999999888999999999987766 665555554 455544444
Q ss_pred ccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhH
Q 003086 309 VKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLA 363 (849)
Q Consensus 309 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLa 363 (849)
+.+ +.+.++.++.++....+...+... .....++....|++..+|..--
T Consensus 168 SRc-q~f~fkri~~~~I~~~L~~i~~~E-----~I~~e~~aL~~ia~~a~Gs~RD 216 (515)
T COG2812 168 SRC-QRFDFKRLDLEEIAKHLAAILDKE-----GINIEEDALSLIARAAEGSLRD 216 (515)
T ss_pred hcc-ccccccCCCHHHHHHHHHHHHHhc-----CCccCHHHHHHHHHHcCCChhh
Confidence 333 789999999999999998887332 2333456667788887776653
No 206
>PRK08118 topology modulation protein; Reviewed
Probab=97.24 E-value=0.00014 Score=69.44 Aligned_cols=34 Identities=29% Similarity=0.595 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcChhhh-cccCceEE
Q 003086 186 AIGVVGMGGLGKTTIAQKVFNDREIE-NWFERRMW 219 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~w 219 (849)
.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58899999999999999999853333 45677775
No 207
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.24 E-value=0.0023 Score=62.59 Aligned_cols=178 Identities=16% Similarity=0.183 Sum_probs=97.7
Q ss_pred CCCCccccccccHHH---HHHHHhccC----CCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHH
Q 003086 158 YDHTLVVGLEGDTRK---IKDWLFEAE----EGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQ 230 (849)
Q Consensus 158 ~~~~~~vGr~~~~~~---l~~~L~~~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 230 (849)
..-++++|.++.+.+ |++.|..++ -.++-|..+|++|.|||.+|+.+.+...+ . ++.+. ..+
T Consensus 118 it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv--p-----~l~vk----at~ 186 (368)
T COG1223 118 ITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV--P-----LLLVK----ATE 186 (368)
T ss_pred ccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC--c-----eEEec----hHH
Confidence 344578998876544 567777763 25788999999999999999999995322 2 22222 111
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHH-HhcCccEEEEEcCCCccC------------HHHHHHHHhcCC---CCCCceE
Q 003086 231 IMRSMLRNLGDASAGDDRGELLRKINQ-YLLGKRYLIVMDDVWGED------------LAWWRRIYEGLP---KGKGSSI 294 (849)
Q Consensus 231 ~~~~i~~~l~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~------------~~~~~~l~~~l~---~~~~s~i 294 (849)
+ |-+.++ +....+..+-+ .-+.-++++++|.++.-. .+....+..-+. .+.|...
T Consensus 187 l---iGehVG------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvt 257 (368)
T COG1223 187 L---IGEHVG------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVT 257 (368)
T ss_pred H---HHHHhh------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEE
Confidence 1 111111 11222222222 224568999999875310 112223332222 2236555
Q ss_pred EEEecchhhhh-hccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCch
Q 003086 295 IITTRNGKVSQ-KMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLP 361 (849)
Q Consensus 295 lvTtr~~~v~~-~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 361 (849)
|-.|.+.+... .+.......++...-+++|-.+++...+-.- +-..+.-.+.++++.+|+.
T Consensus 258 IaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~------Plpv~~~~~~~~~~t~g~S 319 (368)
T COG1223 258 IAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKF------PLPVDADLRYLAAKTKGMS 319 (368)
T ss_pred EeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhC------CCccccCHHHHHHHhCCCC
Confidence 66665544432 2222222466677778999999998887321 1111222556777776654
No 208
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.24 E-value=0.0057 Score=73.29 Aligned_cols=178 Identities=13% Similarity=0.120 Sum_probs=97.6
Q ss_pred CCccccccccHHHHHHHHhcc-----------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCH
Q 003086 160 HTLVVGLEGDTRKIKDWLFEA-----------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTE 228 (849)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 228 (849)
-.++.|.+..++.|.+.+.-+ -...+-|.++|++|+|||++|+.+.+. .... ++.+...
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~-----fi~v~~~--- 521 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGAN-----FIAVRGP--- 521 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCC-----EEEEehH---
Confidence 346788888888777765421 113456889999999999999999884 2222 2333211
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCcc--------C----HHHHHHHHhcCCC---CCCce
Q 003086 229 EQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGE--------D----LAWWRRIYEGLPK---GKGSS 293 (849)
Q Consensus 229 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--------~----~~~~~~l~~~l~~---~~~s~ 293 (849)
+ ++. ...+.+...+...+...-...+.+|+||+++.- . ......+...+.. ..+.-
T Consensus 522 -~----l~~----~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 -E----ILS----KWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred -H----Hhh----cccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 1 111 111223333333334444567799999998531 0 1122333333332 22555
Q ss_pred EEEEecchhhhh-hcc--ccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchh
Q 003086 294 IIITTRNGKVSQ-KMG--VKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPL 362 (849)
Q Consensus 294 ilvTtr~~~v~~-~~~--~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PL 362 (849)
||.||...+... .+- ......+.+...+.++..++|+.+...... ....+ ...+++.|.|.-=
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~--~~~~~----l~~la~~t~g~sg 658 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPL--AEDVD----LEELAEMTEGYTG 658 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCC--CccCC----HHHHHHHcCCCCH
Confidence 676775544322 111 111257788888999999999876522111 11112 3457777777653
No 209
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.23 E-value=0.0094 Score=66.79 Aligned_cols=202 Identities=12% Similarity=0.129 Sum_probs=123.3
Q ss_pred CCccccccccHHHHHHHHhcc---CCCeEEEEEEcCCCCcHHHHHHHHhcChh---hhcccCc--eEEEEeCCccCHHHH
Q 003086 160 HTLVVGLEGDTRKIKDWLFEA---EEGILAIGVVGMGGLGKTTIAQKVFNDRE---IENWFER--RMWVSVSQTFTEEQI 231 (849)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~~~f~~--~~wv~~s~~~~~~~~ 231 (849)
+..+-+||.+..+|.+++... ......+-|.|.+|.|||..++.|.+.-. -++.-.. .+.|+.-.-..+.++
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREI 474 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHH
Confidence 445779999999998888652 23445899999999999999999988422 1122222 234444445578999
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHhc-----CccEEEEEcCCCccCHHHHHHHHhcC--CCCCCceEEEEecc----
Q 003086 232 MRSMLRNLGDASAGDDRGELLRKINQYLL-----GKRYLIVMDDVWGEDLAWWRRIYEGL--PKGKGSSIIITTRN---- 300 (849)
Q Consensus 232 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~~~~~~~~l~~~l--~~~~~s~ilvTtr~---- 300 (849)
+..|...+.+... ......+.|..+.. .+..+|++|+++..-....+-+...| |..++||++|-+=.
T Consensus 475 Y~~I~~~lsg~~~--~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmd 552 (767)
T KOG1514|consen 475 YEKIWEALSGERV--TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMD 552 (767)
T ss_pred HHHHHHhcccCcc--cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccccc
Confidence 9999999987654 34444555555543 35689999998551111133444443 34558887655421
Q ss_pred -------hhhhhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHh
Q 003086 301 -------GKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVG 368 (849)
Q Consensus 301 -------~~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~ 368 (849)
..++..++. ..+...|.+.++..++...+..+... -.....+-++++++...|-.-.|+.+.-
T Consensus 553 lPEr~l~nrvsSRlg~---tRi~F~pYth~qLq~Ii~~RL~~~~~--f~~~aielvarkVAavSGDaRraldic~ 622 (767)
T KOG1514|consen 553 LPERLLMNRVSSRLGL---TRICFQPYTHEQLQEIISARLKGLDA--FENKAIELVARKVAAVSGDARRALDICR 622 (767)
T ss_pred CHHHHhccchhhhccc---eeeecCCCCHHHHHHHHHHhhcchhh--cchhHHHHHHHHHHhccccHHHHHHHHH
Confidence 122333333 35777888888888888777643311 1222233445555555555555554443
No 210
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.22 E-value=0.00064 Score=71.47 Aligned_cols=118 Identities=15% Similarity=0.220 Sum_probs=69.8
Q ss_pred cccccHHHHHHHHhccC--CCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCC
Q 003086 165 GLEGDTRKIKDWLFEAE--EGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDA 242 (849)
Q Consensus 165 Gr~~~~~~l~~~L~~~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 242 (849)
++....+...+++..-. ...+-+.|+|..|+|||.||..+++.. ...-..+.+++++ .++.++.......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l--~~~g~~v~~~~~~------~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANEL--AKKGVSSTLLHFP------EFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCEEEEEHH------HHHHHHHHHHhcC
Confidence 44444555556665321 134578999999999999999999852 2222345666553 4555555544321
Q ss_pred CCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHH--HHhcC-CC--CCCceEEEEec
Q 003086 243 SAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRR--IYEGL-PK--GKGSSIIITTR 299 (849)
Q Consensus 243 ~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~--l~~~l-~~--~~~s~ilvTtr 299 (849)
+..+. +.. + .+-=||||||+..+....|.. +...+ .. ..+..+|+||.
T Consensus 207 ----~~~~~---l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 207 ----SVKEK---IDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred ----cHHHH---HHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 22222 222 2 245699999997665666753 44443 22 23567888886
No 211
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.21 E-value=0.00014 Score=67.43 Aligned_cols=89 Identities=22% Similarity=0.264 Sum_probs=51.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEE
Q 003086 187 IGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLI 266 (849)
Q Consensus 187 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~Ll 266 (849)
|.|+|++|+|||+||+.++.- .. ....-+.++...+..++....--. ..... .....+...+ .+..++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~---~~~~~i~~~~~~~~~dl~g~~~~~-~~~~~-~~~~~l~~a~-----~~~~il 69 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LG---RPVIRINCSSDTTEEDLIGSYDPS-NGQFE-FKDGPLVRAM-----RKGGIL 69 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HT---CEEEEEE-TTTSTHHHHHCEEET--TTTTC-EEE-CCCTTH-----HEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hh---cceEEEEeccccccccceeeeeec-ccccc-cccccccccc-----cceeEE
Confidence 679999999999999999872 21 123456777777777665433221 11110 0000111111 178999
Q ss_pred EEcCCCccCHHHHHHHHhcCC
Q 003086 267 VMDDVWGEDLAWWRRIYEGLP 287 (849)
Q Consensus 267 VlDdv~~~~~~~~~~l~~~l~ 287 (849)
|||++...+...+..+...+.
T Consensus 70 ~lDEin~a~~~v~~~L~~ll~ 90 (139)
T PF07728_consen 70 VLDEINRAPPEVLESLLSLLE 90 (139)
T ss_dssp EESSCGG--HHHHHTTHHHHS
T ss_pred EECCcccCCHHHHHHHHHHHh
Confidence 999998766776766666554
No 212
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.21 E-value=3.3e-05 Score=67.78 Aligned_cols=101 Identities=17% Similarity=0.243 Sum_probs=55.9
Q ss_pred cceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccC-CCCCcEEeeccccCCccCChhhhcccCCcE
Q 003086 559 YLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKK-LKNLQILDVSYCQNLKMLPSYVQSFIQLRA 637 (849)
Q Consensus 559 ~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~-L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~ 637 (849)
.+..+||+.|.+. .+...+..+....+|...+|++| ..+.+|..+.. .+.+++|++++ +.+..+|..+..++.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhh
Confidence 3445566666543 01122333445566666666666 66666665543 34666666663 345566666666666666
Q ss_pred eeccCCCCccccCccccccccccccC
Q 003086 638 LDVTHCGSLQYLPKGFGKLLNLEVLL 663 (849)
Q Consensus 638 L~l~~~~~~~~~p~~i~~l~~L~~L~ 663 (849)
|+++.|.+. ..|..|..|.+|-.|+
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhc
Confidence 666666655 4555554444444443
No 213
>PRK06921 hypothetical protein; Provisional
Probab=97.19 E-value=0.0011 Score=68.26 Aligned_cols=97 Identities=19% Similarity=0.300 Sum_probs=54.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcc-cCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENW-FERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGK 262 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 262 (849)
...+.++|.+|+|||+||..+++. +... -..++|++.. +++..+...+ +...+.+.. + .+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~~------~l~~~l~~~~---------~~~~~~~~~-~-~~ 177 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPFV------EGFGDLKDDF---------DLLEAKLNR-M-KK 177 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEHH------HHHHHHHHHH---------HHHHHHHHH-h-cC
Confidence 467899999999999999999984 3332 3446677642 3333332221 111122222 2 23
Q ss_pred cEEEEEcCCCc-----cCHHHHH--HHHhcCCC--CCCceEEEEec
Q 003086 263 RYLIVMDDVWG-----EDLAWWR--RIYEGLPK--GKGSSIIITTR 299 (849)
Q Consensus 263 ~~LlVlDdv~~-----~~~~~~~--~l~~~l~~--~~~s~ilvTtr 299 (849)
-=||||||+.. +....|. .+...+.. ..+..+||||.
T Consensus 178 ~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn 223 (266)
T PRK06921 178 VEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSE 223 (266)
T ss_pred CCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 45999999932 2223343 24333322 12456888886
No 214
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.19 E-value=0.0022 Score=67.96 Aligned_cols=102 Identities=18% Similarity=0.161 Sum_probs=66.1
Q ss_pred cHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhc-ccCc-eEEEEeCC-ccCHHHHHHHHHHHhcCCCCC
Q 003086 169 DTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIEN-WFER-RMWVSVSQ-TFTEEQIMRSMLRNLGDASAG 245 (849)
Q Consensus 169 ~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~f~~-~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~ 245 (849)
-..++++.+..-..+ ..+.|+|.+|+|||||++.+.+. +.. +-+. ++|+.+.+ ...+.++.+.+...+......
T Consensus 119 ~~~RvID~l~PiGkG-QR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~d 195 (380)
T PRK12608 119 LSMRVVDLVAPIGKG-QRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFD 195 (380)
T ss_pred hhHhhhhheeecCCC-ceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCC
Confidence 345577877653333 34589999999999999998873 322 2234 46766665 457889999998877765432
Q ss_pred CCHH------HHHHHHHHHh--cCccEEEEEcCCCc
Q 003086 246 DDRG------ELLRKINQYL--LGKRYLIVMDDVWG 273 (849)
Q Consensus 246 ~~~~------~~~~~l~~~l--~~~~~LlVlDdv~~ 273 (849)
.... .....+.+++ .+++++||+|++..
T Consensus 196 e~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 196 RPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 1111 1112222222 68999999999954
No 215
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.16 E-value=8.6e-06 Score=89.86 Aligned_cols=125 Identities=19% Similarity=0.171 Sum_probs=68.6
Q ss_pred CcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccce
Q 003086 611 LQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKL 690 (849)
Q Consensus 611 L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L 690 (849)
|.+.+.++ +.+..+...+.-++.|++|+|++|++. ... .+..|+.|+.|++..|... ...-..-..+ .|+.|
T Consensus 166 L~~a~fsy-N~L~~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~----~vp~l~~~gc-~L~~L 237 (1096)
T KOG1859|consen 166 LATASFSY-NRLVLMDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR----HVPQLSMVGC-KLQLL 237 (1096)
T ss_pred Hhhhhcch-hhHHhHHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc----cccccchhhh-hheee
Confidence 55666663 345556666777778888888888765 232 5667777777776554211 1000011112 26677
Q ss_pred eeeeccCcccchHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccC
Q 003086 691 GLQLTCGDEIEEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYP 748 (849)
Q Consensus 691 ~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~ 748 (849)
.+.+|.++.. ..+.++.+|+.|++++|-+.+.. .+..+..+..|..|.+.|+.
T Consensus 238 ~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hs---eL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 238 NLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHS---ELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred eecccHHHhh--hhHHhhhhhhccchhHhhhhcch---hhhHHHHHHHHHHHhhcCCc
Confidence 7777754433 23556677777777777543321 22223334455556666553
No 216
>PRK06526 transposase; Provisional
Probab=97.15 E-value=0.00045 Score=70.58 Aligned_cols=100 Identities=17% Similarity=0.166 Sum_probs=52.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCcc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKR 263 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 263 (849)
...+.|+|++|+|||+||..+.+... +..+ .+.|+ +..+++..+..... ... ....+.+. .+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~-~~g~-~v~f~------t~~~l~~~l~~~~~----~~~---~~~~l~~l--~~~ 160 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRAC-QAGH-RVLFA------TAAQWVARLAAAHH----AGR---LQAELVKL--GRY 160 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHH-HCCC-chhhh------hHHHHHHHHHHHHh----cCc---HHHHHHHh--ccC
Confidence 34689999999999999999977422 2222 23443 33445555443221 111 12223332 234
Q ss_pred EEEEEcCCCccC--HHHHHHHHhcCCCC-CCceEEEEecc
Q 003086 264 YLIVMDDVWGED--LAWWRRIYEGLPKG-KGSSIIITTRN 300 (849)
Q Consensus 264 ~LlVlDdv~~~~--~~~~~~l~~~l~~~-~~s~ilvTtr~ 300 (849)
-+||+||+.... ...-+.+...+... ....+|+||..
T Consensus 161 dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~ 200 (254)
T PRK06526 161 PLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNK 200 (254)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCC
Confidence 599999997532 22222333333221 12348888874
No 217
>PRK04132 replication factor C small subunit; Provisional
Probab=97.14 E-value=0.0089 Score=70.64 Aligned_cols=155 Identities=12% Similarity=0.002 Sum_probs=99.0
Q ss_pred CCCCcHHHHHHHHhcChhhhcccC-ceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcC
Q 003086 192 MGGLGKTTIAQKVFNDREIENWFE-RRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDD 270 (849)
Q Consensus 192 ~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd 270 (849)
+.++||||+|+.++++. ....+. .++-++.+....+.. +++++..+....+. -..+.-++|+|+
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid~-IR~iIk~~a~~~~~-------------~~~~~KVvIIDE 638 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGINV-IREKVKEFARTKPI-------------GGASFKIIFLDE 638 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHHH-HHHHHHHHHhcCCc-------------CCCCCEEEEEEC
Confidence 77899999999998852 122222 356677775544442 33333322111110 012457999999
Q ss_pred CCccCHHHHHHHHhcCCCCC-CceEEEEecc-hhhhhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhH
Q 003086 271 VWGEDLAWWRRIYEGLPKGK-GSSIIITTRN-GKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEG 348 (849)
Q Consensus 271 v~~~~~~~~~~l~~~l~~~~-~s~ilvTtr~-~~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~ 348 (849)
++..+...+..++..+-.-+ .+++|++|.+ ..+.......+ ..+.+.+++.++....+.+.+.... ....++
T Consensus 639 aD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~L~~I~~~Eg-----i~i~~e 712 (846)
T PRK04132 639 ADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKRLRYIAENEG-----LELTEE 712 (846)
T ss_pred cccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCHHHHHHHHHHHHHhcC-----CCCCHH
Confidence 99988888999988887644 6666555544 44444444433 6899999999999998887763211 112256
Q ss_pred HHHHHHHhcCCchhHHHHH
Q 003086 349 VGKEIVEKCKGLPLAIKAV 367 (849)
Q Consensus 349 ~~~~i~~~c~G~PLai~~~ 367 (849)
....|++.|+|.+..+..+
T Consensus 713 ~L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 713 GLQAILYIAEGDMRRAINI 731 (846)
T ss_pred HHHHHHHHcCCCHHHHHHH
Confidence 7889999999998654443
No 218
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.13 E-value=0.0032 Score=74.20 Aligned_cols=115 Identities=13% Similarity=0.214 Sum_probs=69.8
Q ss_pred ccccccccHHHHHHHHhcc-------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHH
Q 003086 162 LVVGLEGDTRKIKDWLFEA-------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRS 234 (849)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 234 (849)
.++|-++.++.|.+.+... ......+.++|++|+|||++|+.+... .. ...+.++++...... .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~---~~~i~id~se~~~~~----~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERH----T 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hC---CCcEEeechhhcccc----c
Confidence 4788888888888887632 223457899999999999999998763 22 223455554332211 1
Q ss_pred HHHHhcCCCC--CC-CHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCC
Q 003086 235 MLRNLGDASA--GD-DRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPK 288 (849)
Q Consensus 235 i~~~l~~~~~--~~-~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~ 288 (849)
+..-++.+.. +. ....+.+.++ .....+|+||++....++.++.+...+.+
T Consensus 530 ~~~LiG~~~gyvg~~~~g~L~~~v~---~~p~sVlllDEieka~~~v~~~LLq~ld~ 583 (758)
T PRK11034 530 VSRLIGAPPGYVGFDQGGLLTDAVI---KHPHAVLLLDEIEKAHPDVFNLLLQVMDN 583 (758)
T ss_pred HHHHcCCCCCcccccccchHHHHHH---hCCCcEEEeccHhhhhHHHHHHHHHHHhc
Confidence 2122232211 11 1122222222 23456999999998888888888877654
No 219
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.13 E-value=0.0053 Score=65.18 Aligned_cols=71 Identities=13% Similarity=0.120 Sum_probs=49.1
Q ss_pred CccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEecc-hhhhhhccccccccccCCCCChhhHHHHHHHH
Q 003086 261 GKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITTRN-GKVSQKMGVKKARMHFPKFLSEDDSWLLFRKI 332 (849)
Q Consensus 261 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTtr~-~~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~ 332 (849)
+++-++|+|++..-+......+...+.... +..+|++|.+ ..+...+.... ..+.+.+++.+++.+.+.+.
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc-~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRC-RKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHh-hhhcCCCCCHHHHHHHHHhc
Confidence 445566779998877777777777765544 5666666665 44444444333 68899999999999888654
No 220
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.12 E-value=0.0017 Score=78.34 Aligned_cols=119 Identities=14% Similarity=0.250 Sum_probs=70.7
Q ss_pred CccccccccHHHHHHHHhcc-------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEA-------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMR 233 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 233 (849)
..++|-+..++.|...+... +....++.++|+.|+|||+||+.+.+. .-..-...+-+..+.-.+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccH--
Confidence 56889999999998877532 223456778999999999999998762 1111122334444432221111
Q ss_pred HHHHHhcCCCC--C-CCHHHHHHHHHHHhcCc-cEEEEEcCCCccCHHHHHHHHhcCCCC
Q 003086 234 SMLRNLGDASA--G-DDRGELLRKINQYLLGK-RYLIVMDDVWGEDLAWWRRIYEGLPKG 289 (849)
Q Consensus 234 ~i~~~l~~~~~--~-~~~~~~~~~l~~~l~~~-~~LlVlDdv~~~~~~~~~~l~~~l~~~ 289 (849)
..-++.+.. + +....+. +.+..+ ..+++||++...++..++.+...+..+
T Consensus 585 --~~l~g~~~gyvg~~~~~~l~----~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g 638 (821)
T CHL00095 585 --SKLIGSPPGYVGYNEGGQLT----EAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDG 638 (821)
T ss_pred --HHhcCCCCcccCcCccchHH----HHHHhCCCeEEEECChhhCCHHHHHHHHHHhccC
Confidence 111222211 1 1222333 333333 469999999988888899888887653
No 221
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.11 E-value=0.0019 Score=73.69 Aligned_cols=167 Identities=16% Similarity=0.197 Sum_probs=89.9
Q ss_pred ccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhh--hcccC-ceEEEEeCC---ccCHHHHHHHH
Q 003086 162 LVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREI--ENWFE-RRMWVSVSQ---TFTEEQIMRSM 235 (849)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~--~~~f~-~~~wv~~s~---~~~~~~~~~~i 235 (849)
+++|.+..++.+...+.... ...|.|+|++|+|||++|+.+++...- ...|. ..-|+.+.- .++.+.+...+
T Consensus 66 ~iiGqs~~i~~l~~al~~~~--~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~l 143 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGPN--PQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPL 143 (531)
T ss_pred HeeCcHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhh
Confidence 68999999999988776543 346789999999999999999763111 11232 123343321 12222222222
Q ss_pred HHHhcCCCC-CC------CH-HHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCC------------------
Q 003086 236 LRNLGDASA-GD------DR-GELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKG------------------ 289 (849)
Q Consensus 236 ~~~l~~~~~-~~------~~-~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~------------------ 289 (849)
+.....+.. .. .. ......+. ....=+|+||++...+......+...+.++
T Consensus 144 i~~~~~p~~~~~~~~g~~g~~~~~~G~l~---~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~ 220 (531)
T TIGR02902 144 IGSVHDPIYQGAGPLGIAGIPQPKPGAVT---RAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPS 220 (531)
T ss_pred cCCcccchhccccccccCCcccccCchhh---ccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCccccc
Confidence 111100000 00 00 00000010 123458999999987777777776544221
Q ss_pred ----------C-CceEEEEe-cch-hhhhhccccccccccCCCCChhhHHHHHHHHhh
Q 003086 290 ----------K-GSSIIITT-RNG-KVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAF 334 (849)
Q Consensus 290 ----------~-~s~ilvTt-r~~-~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 334 (849)
+ ..++|.+| ++. .+........ ..+.+.+++.+|..+++++.+-
T Consensus 221 ~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~-~~I~f~pL~~eei~~Il~~~a~ 277 (531)
T TIGR02902 221 HIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRC-VEIFFRPLLDEEIKEIAKNAAE 277 (531)
T ss_pred chhhhcccCcccceEEEEEecCCcccCChHHhhhh-heeeCCCCCHHHHHHHHHHHHH
Confidence 1 23666554 332 2222222211 4677899999999999888773
No 222
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0035 Score=69.90 Aligned_cols=178 Identities=14% Similarity=0.005 Sum_probs=93.6
Q ss_pred ccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCcc--CHHHHHHHHHHHh
Q 003086 162 LVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTF--TEEQIMRSMLRNL 239 (849)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l 239 (849)
+|+--...++...+....+--....|.|.|+.|+|||+||+.+++... +++.-++.+|+++.-. ..+.+++.+
T Consensus 409 d~i~~~s~kke~~n~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l---- 483 (952)
T KOG0735|consen 409 DFIQVPSYKKENANQELSPVFRHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFL---- 483 (952)
T ss_pred ceeecchhhhhhhhhhcccccccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHH----
Confidence 344433334444433333323456789999999999999999998533 4455556777777431 122222222
Q ss_pred cCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCc------cCHHHH----HHHHhcCCC-----CC-Cce--EEEEecch
Q 003086 240 GDASAGDDRGELLRKINQYLLGKRYLIVMDDVWG------EDLAWW----RRIYEGLPK-----GK-GSS--IIITTRNG 301 (849)
Q Consensus 240 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~------~~~~~~----~~l~~~l~~-----~~-~s~--ilvTtr~~ 301 (849)
...+.+.+...+.+|||||++. .+..+| +.+..++.+ .. +.+ +|.|....
T Consensus 484 ------------~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~ 551 (952)
T KOG0735|consen 484 ------------NNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQEL 551 (952)
T ss_pred ------------HHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhh
Confidence 1223344567789999999853 111111 112222211 12 333 45555442
Q ss_pred hhh-hhcccccc--ccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCch
Q 003086 302 KVS-QKMGVKKA--RMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLP 361 (849)
Q Consensus 302 ~v~-~~~~~~~~--~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 361 (849)
.-. ........ ....|..+...+-.++++....... .....+...-++.+|+|.-
T Consensus 552 qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~-----~~~~~~dLd~ls~~TEGy~ 609 (952)
T KOG0735|consen 552 QTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNL-----SDITMDDLDFLSVKTEGYL 609 (952)
T ss_pred hhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhh-----hhhhhHHHHHHHHhcCCcc
Confidence 221 11111111 4677888888888888877652221 1112233334788887753
No 223
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.09 E-value=0.00054 Score=63.29 Aligned_cols=106 Identities=15% Similarity=0.194 Sum_probs=65.3
Q ss_pred ccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhh-hcccCceEEEEeCCccCHHHHHHHHHHHhcCC
Q 003086 164 VGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREI-ENWFERRMWVSVSQTFTEEQIMRSMLRNLGDA 242 (849)
Q Consensus 164 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 242 (849)
||....++++.+.+..-......|.|+|.+|+||+++|+.++..... ...|.. +.+... . .++
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~---~~~~~~-~-----~~~------- 64 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIV---IDCASL-P-----AEL------- 64 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCC---CCHHCT-C-----HHH-------
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEE---echhhC-c-----HHH-------
Confidence 57777888888777664333456789999999999999998774221 112211 111110 0 111
Q ss_pred CCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCC--CCceEEEEecc
Q 003086 243 SAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKG--KGSSIIITTRN 300 (849)
Q Consensus 243 ~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~--~~s~ilvTtr~ 300 (849)
+.+ -+.--|+|+|+..-+......+...+... ...|+|.||+.
T Consensus 65 ------------l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 65 ------------LEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp ------------HHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred ------------HHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 111 14456889999887788888888777643 38899999974
No 224
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.08 E-value=0.01 Score=66.51 Aligned_cols=180 Identities=14% Similarity=0.097 Sum_probs=93.2
Q ss_pred CccccccccHHHHHHHHhc--------cCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFE--------AEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIM 232 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~--------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 232 (849)
.++.|.+.-++.+.+.... +-...+-|.++|++|+|||.+|+.+.+. ....| +-+..+ .
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~------~-- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVG------K-- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhH------H--
Confidence 4577877666555442211 1123567899999999999999999873 22111 122221 1
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCcc--------CHH----HHHHHHhcCCCCC-CceEEEEec
Q 003086 233 RSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGE--------DLA----WWRRIYEGLPKGK-GSSIIITTR 299 (849)
Q Consensus 233 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--------~~~----~~~~l~~~l~~~~-~s~ilvTtr 299 (849)
+.....+.+...+.+.+...-...+++|++|+++.. +.. ....+...+.... +.-||.||.
T Consensus 295 ------l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN 368 (489)
T CHL00195 295 ------LFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATAN 368 (489)
T ss_pred ------hcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 111111223333333333333457899999998631 111 1122222332222 445666775
Q ss_pred chh-hhhhcc--ccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhH
Q 003086 300 NGK-VSQKMG--VKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLA 363 (849)
Q Consensus 300 ~~~-v~~~~~--~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLa 363 (849)
... +-..+- ..-...+.+..-+.++-.++|..+.......... ......+++.+.|.-=|
T Consensus 369 ~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~----~~dl~~La~~T~GfSGA 431 (489)
T CHL00195 369 NIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWK----KYDIKKLSKLSNKFSGA 431 (489)
T ss_pred ChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccc----ccCHHHHHhhcCCCCHH
Confidence 533 222211 1111467788889999999999887442211001 11235667777666543
No 225
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.07 E-value=0.0029 Score=72.93 Aligned_cols=132 Identities=16% Similarity=0.170 Sum_probs=77.5
Q ss_pred CCCccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHH
Q 003086 159 DHTLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRN 238 (849)
Q Consensus 159 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 238 (849)
....++|....++++.+.+..-......|.|+|..|+|||++|+.+.+...- .-...+.|+++.-. ...+...+
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r--~~~pfv~i~c~~~~--~~~~~~~l-- 267 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPR--AKRPFVKVNCAALS--ETLLESEL-- 267 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCC--CCCCeEEeecCCCC--HHHHHHHH--
Confidence 4457999999999999888764333456789999999999999999874211 11223555555332 12222211
Q ss_pred hcCCC---CCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCCC------------CceEEEEecc
Q 003086 239 LGDAS---AGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK------------GSSIIITTRN 300 (849)
Q Consensus 239 l~~~~---~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------~s~ilvTtr~ 300 (849)
++... .+... .....+ -....=.|+||++.......+..+...+..+. ..+||.||..
T Consensus 268 fg~~~~~~~~~~~-~~~g~~---~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~ 340 (534)
T TIGR01817 268 FGHEKGAFTGAIA-QRKGRF---ELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNR 340 (534)
T ss_pred cCCCCCccCCCCc-CCCCcc---cccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCC
Confidence 11111 01000 000000 01223468999999877888888888775432 2478887754
No 226
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0075 Score=65.02 Aligned_cols=145 Identities=19% Similarity=0.232 Sum_probs=86.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH----H
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQ----Y 258 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~----~ 258 (849)
+...+.+.|++|+|||+||..+..+ ..|+.+--++.. ++. +-++......+++ .
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSpe------~mi------------G~sEsaKc~~i~k~F~DA 594 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISPE------DMI------------GLSESAKCAHIKKIFEDA 594 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeChH------Hcc------------CccHHHHHHHHHHHHHHh
Confidence 5677889999999999999999764 456654433221 110 2233333344443 3
Q ss_pred hcCccEEEEEcCCCccCHHHH------------HHHHhcCCCCC--Cce--EEEEecchhhhhhcccccc--ccccCCCC
Q 003086 259 LLGKRYLIVMDDVWGEDLAWW------------RRIYEGLPKGK--GSS--IIITTRNGKVSQKMGVKKA--RMHFPKFL 320 (849)
Q Consensus 259 l~~~~~LlVlDdv~~~~~~~~------------~~l~~~l~~~~--~s~--ilvTtr~~~v~~~~~~~~~--~~~~l~~L 320 (849)
-+..-..||+||+.. .-+| ..+...+...+ |-| |+-||....|...|+.... ..|.++.+
T Consensus 595 YkS~lsiivvDdiEr--LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl 672 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIER--LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNL 672 (744)
T ss_pred hcCcceEEEEcchhh--hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCcc
Confidence 355668999999955 3333 23333333322 334 5567777788877765322 46788888
Q ss_pred Ch-hhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhc
Q 003086 321 SE-DDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKC 357 (849)
Q Consensus 321 ~~-~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c 357 (849)
+. ++..+.++..-.. .+.+...++++...+|
T Consensus 673 ~~~~~~~~vl~~~n~f------sd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 673 TTGEQLLEVLEELNIF------SDDEVRAIAEQLLSKK 704 (744)
T ss_pred CchHHHHHHHHHccCC------CcchhHHHHHHHhccc
Confidence 77 7777777665311 2233455566666666
No 227
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.05 E-value=0.0019 Score=77.72 Aligned_cols=121 Identities=18% Similarity=0.223 Sum_probs=71.8
Q ss_pred CCccccccccHHHHHHHHhcc-------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHH
Q 003086 160 HTLVVGLEGDTRKIKDWLFEA-------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIM 232 (849)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 232 (849)
...++|-+..++.+.+.+... .....++.++|++|+|||.||+.+... .-+.....+-++++...+.
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~---- 638 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEA---- 638 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhh----
Confidence 346899999999998887532 224567899999999999999988662 2111122222333321111
Q ss_pred HHHHHHhcCCCC--CC-CHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCC
Q 003086 233 RSMLRNLGDASA--GD-DRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKG 289 (849)
Q Consensus 233 ~~i~~~l~~~~~--~~-~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~ 289 (849)
..+..-++.+.. +. ....+.+.+++ ....+|+||++...++..++.+...+..+
T Consensus 639 ~~~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g 695 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKG 695 (852)
T ss_pred hhhccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcc
Confidence 111111222211 11 22233344433 45679999999888888888888777554
No 228
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.015 Score=63.97 Aligned_cols=177 Identities=14% Similarity=0.205 Sum_probs=100.1
Q ss_pred CCccccccccHHHHHHHHhc---cC-------CCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHH
Q 003086 160 HTLVVGLEGDTRKIKDWLFE---AE-------EGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEE 229 (849)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~---~~-------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 229 (849)
-.++=|.+..+.++.+++.. ++ ...+=|.++|++|.|||.||+.+.++ .. +-++.++.+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge--l~-----vPf~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE--LG-----VPFLSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh--cC-----CceEeecch----
Confidence 34677899988888777643 21 24567899999999999999999984 22 334455422
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccC-------HH----HHHHHHhcCCC---C--CCce
Q 003086 230 QIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGED-------LA----WWRRIYEGLPK---G--KGSS 293 (849)
Q Consensus 230 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------~~----~~~~l~~~l~~---~--~~s~ 293 (849)
+|+..+ .+.++..+.+.+.+.-..-++++++|+++--. .+ ...++...+.. . .|-.
T Consensus 258 ----eivSGv----SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~ 329 (802)
T KOG0733|consen 258 ----EIVSGV----SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDP 329 (802)
T ss_pred ----hhhccc----CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCC
Confidence 222222 24455666666666667889999999995411 11 11223322221 1 1222
Q ss_pred EEE---Eecchhhhhhccc--cccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCch
Q 003086 294 III---TTRNGKVSQKMGV--KKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLP 361 (849)
Q Consensus 294 ilv---Ttr~~~v~~~~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 361 (849)
||| |+|...+-..... ...+.+.|.--++..-.+++...+-+-..+ ..-+ -++|++.+-|.-
T Consensus 330 VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~--g~~d----~~qlA~lTPGfV 396 (802)
T KOG0733|consen 330 VLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLS--GDFD----FKQLAKLTPGFV 396 (802)
T ss_pred eEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCC--CCcC----HHHHHhcCCCcc
Confidence 322 4555444333221 111566777777777777777776433221 1122 245666665543
No 229
>PRK07261 topology modulation protein; Provisional
Probab=97.01 E-value=0.0017 Score=62.39 Aligned_cols=66 Identities=20% Similarity=0.385 Sum_probs=41.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcChhh-hcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccE
Q 003086 186 AIGVVGMGGLGKTTIAQKVFNDREI-ENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRY 264 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 264 (849)
.|+|+|++|+||||||+.+...... .-+.|...|-... ...+.++....+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~- 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW--------------------QERDDDDMIADISNFLLKHD- 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc--------------------ccCCHHHHHHHHHHHHhCCC-
Confidence 4889999999999999998763211 1234444452111 12234556666666676665
Q ss_pred EEEEcCCCc
Q 003086 265 LIVMDDVWG 273 (849)
Q Consensus 265 LlVlDdv~~ 273 (849)
.|+|+...
T Consensus 61 -wIidg~~~ 68 (171)
T PRK07261 61 -WIIDGNYS 68 (171)
T ss_pred -EEEcCcch
Confidence 67788864
No 230
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.99 E-value=0.0017 Score=68.78 Aligned_cols=101 Identities=15% Similarity=0.226 Sum_probs=55.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccE
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRY 264 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 264 (849)
..+.++|.+|+|||.||..+++. ....-..++++++. +++..+...-... ..+... .+ +.+. .-=
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~~------~l~~~l~~~~~~~--~~~~~~---~~-~~l~-~~D 248 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTAD------ELIEILREIRFNN--DKELEE---VY-DLLI-NCD 248 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEHH------HHHHHHHHHHhcc--chhHHH---HH-HHhc-cCC
Confidence 67999999999999999999884 32222346676543 3333333211111 011111 12 2222 224
Q ss_pred EEEEcCCCccCHHHH--HHHHhcCCC--CCCceEEEEecc
Q 003086 265 LIVMDDVWGEDLAWW--RRIYEGLPK--GKGSSIIITTRN 300 (849)
Q Consensus 265 LlVlDdv~~~~~~~~--~~l~~~l~~--~~~s~ilvTtr~ 300 (849)
||||||+..+....| +.+...+.. ..+..+||||..
T Consensus 249 LLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 249 LLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred EEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 899999965322223 334443332 225678888863
No 231
>PRK04296 thymidine kinase; Provisional
Probab=96.98 E-value=0.0018 Score=63.34 Aligned_cols=112 Identities=13% Similarity=0.027 Sum_probs=64.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCC---CCCHHHHHHHHHHHhcC
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASA---GDDRGELLRKINQYLLG 261 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~l~~~l~~ 261 (849)
.++.|+|..|.||||+|..+... ...+-..++.+. ..++.+.....+++.++.... .....++...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 47789999999999999888773 333333334342 222222234445666654322 1234455555555 334
Q ss_pred ccEEEEEcCCCccCHHHHHHHHhcCCCCCCceEEEEecchh
Q 003086 262 KRYLIVMDDVWGEDLAWWRRIYEGLPKGKGSSIIITTRNGK 302 (849)
Q Consensus 262 ~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~s~ilvTtr~~~ 302 (849)
+.-+||+|.+...+.++...+...+ ...|..||+|.+..+
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l-~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL-DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH-HHcCCeEEEEecCcc
Confidence 5569999999764333233333332 133889999998744
No 232
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.98 E-value=0.015 Score=61.14 Aligned_cols=72 Identities=21% Similarity=0.250 Sum_probs=44.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHh---
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYL--- 259 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l--- 259 (849)
.++.+.|+|++|.|||.+|+.+++. ..-. ++.++.. .+.....+++...+.+.++..-
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~e--lg~~-----~i~vsa~------------eL~sk~vGEsEk~IR~~F~~A~~~a 207 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKK--MGIE-----PIVMSAG------------ELESENAGEPGKLIRQRYREAADII 207 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHH--cCCC-----eEEEEHH------------HhhcCcCCcHHHHHHHHHHHHHHHh
Confidence 5689999999999999999999984 2222 2333311 1222222334444444433321
Q ss_pred --cCccEEEEEcCCCc
Q 003086 260 --LGKRYLIVMDDVWG 273 (849)
Q Consensus 260 --~~~~~LlVlDdv~~ 273 (849)
++++++|++||++.
T Consensus 208 ~~~~aPcVLFIDEIDA 223 (413)
T PLN00020 208 KKKGKMSCLFINDLDA 223 (413)
T ss_pred hccCCCeEEEEehhhh
Confidence 46899999999853
No 233
>PRK09183 transposase/IS protein; Provisional
Probab=96.96 E-value=0.0018 Score=66.68 Aligned_cols=99 Identities=15% Similarity=0.160 Sum_probs=51.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccE
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRY 264 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 264 (849)
..+.|+|++|+|||+||..+..... ..-..+.+++ ..++...+...... .. ....+.+.+ .+.-
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~--~~G~~v~~~~------~~~l~~~l~~a~~~----~~---~~~~~~~~~-~~~d 166 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV--RAGIKVRFTT------AADLLLQLSTAQRQ----GR---YKTTLQRGV-MAPR 166 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH--HcCCeEEEEe------HHHHHHHHHHHHHC----Cc---HHHHHHHHh-cCCC
Confidence 4678999999999999999976321 1112334443 22333333222111 11 122222222 3446
Q ss_pred EEEEcCCCccC--HHHHHHHHhcCCC--CCCceEEEEecc
Q 003086 265 LIVMDDVWGED--LAWWRRIYEGLPK--GKGSSIIITTRN 300 (849)
Q Consensus 265 LlVlDdv~~~~--~~~~~~l~~~l~~--~~~s~ilvTtr~ 300 (849)
++|+||+.... ....+.+...+.. ..+ .+|+||..
T Consensus 167 lLiiDdlg~~~~~~~~~~~lf~li~~r~~~~-s~iiTsn~ 205 (259)
T PRK09183 167 LLIIDEIGYLPFSQEEANLFFQVIAKRYEKG-SMILTSNL 205 (259)
T ss_pred EEEEcccccCCCChHHHHHHHHHHHHHHhcC-cEEEecCC
Confidence 99999997522 2222233333322 224 48888863
No 234
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.94 E-value=0.0016 Score=62.85 Aligned_cols=100 Identities=22% Similarity=0.340 Sum_probs=51.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCcc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKR 263 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 263 (849)
..-+.|+|.+|+|||.||..+.+.. +. +=..+.|+++ .+++..+ ..........+..+. +. +-
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~-~~-~g~~v~f~~~------~~L~~~l----~~~~~~~~~~~~~~~----l~-~~ 109 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEA-IR-KGYSVLFITA------SDLLDEL----KQSRSDGSYEELLKR----LK-RV 109 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHH-HH-TT--EEEEEH------HHHHHHH----HCCHCCTTHCHHHHH----HH-TS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHh-cc-CCcceeEeec------Cceeccc----cccccccchhhhcCc----cc-cc
Confidence 4568999999999999999998742 22 2234667753 3444444 322222233333222 22 23
Q ss_pred EEEEEcCCCccCHHHHHH--HHhcCCCC-CCceEEEEecc
Q 003086 264 YLIVMDDVWGEDLAWWRR--IYEGLPKG-KGSSIIITTRN 300 (849)
Q Consensus 264 ~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~s~ilvTtr~ 300 (849)
=||||||+-......|.. +...+... ....+||||..
T Consensus 110 dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~ 149 (178)
T PF01695_consen 110 DLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNL 149 (178)
T ss_dssp SCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS
T ss_pred cEecccccceeeecccccccchhhhhHhhcccCeEeeCCC
Confidence 488899997644444431 11111111 12358888874
No 235
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.94 E-value=0.035 Score=59.72 Aligned_cols=41 Identities=15% Similarity=0.319 Sum_probs=33.5
Q ss_pred cccHHHHHHHHhccC-CCeEEEEEEcCCCCcHHHHHHHHhcC
Q 003086 167 EGDTRKIKDWLFEAE-EGILAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 167 ~~~~~~l~~~L~~~~-~~~~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
+.-.+.|.+.+...+ ....+|+|.|.=|+||||+.+.+.+.
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345677778887753 57889999999999999999998774
No 236
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.93 E-value=0.0032 Score=63.69 Aligned_cols=86 Identities=17% Similarity=0.170 Sum_probs=51.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHH----hcCCC---CCCCHHH---HH
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRN----LGDAS---AGDDRGE---LL 252 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~----l~~~~---~~~~~~~---~~ 252 (849)
.-.++.|+|.+|+|||++|..++.. ....-..++|++.. .++.+.+. +++.. +.... ...+..+ ..
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 97 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSEAI 97 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHHHH
Confidence 4579999999999999999998764 32334668999887 55555433 33322 10000 0122222 23
Q ss_pred HHHHHHhcCccEEEEEcCCC
Q 003086 253 RKINQYLLGKRYLIVMDDVW 272 (849)
Q Consensus 253 ~~l~~~l~~~~~LlVlDdv~ 272 (849)
+.+.+.+..+.-++|+|.+.
T Consensus 98 ~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 98 RKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred HHHHHHHHhcccEEEEeCcH
Confidence 33334444566688888873
No 237
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0019 Score=74.60 Aligned_cols=156 Identities=18% Similarity=0.230 Sum_probs=92.4
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhc-c----c-CceEEEEeCCccCHHHHHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIEN-W----F-ERRMWVSVSQTFTEEQIMRS 234 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~----f-~~~~wv~~s~~~~~~~~~~~ 234 (849)
+.++||++|++++++.|.....+-+ .++|.+|||||++|.-++.. +.. . . +..++ ++ +
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~r--Iv~g~VP~~L~~~~i~-sL-----------D 233 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQR--IVNGDVPESLKDKRIY-SL-----------D 233 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHH--HhcCCCCHHHcCCEEE-Ee-----------c
Confidence 4589999999999999988644333 45899999999988766552 211 1 0 11111 11 1
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHh-cCccEEEEEcCCCc-----c----CHHHHHHHHhcCCCCCCceEEEEecchhhh
Q 003086 235 MLRNLGDASAGDDRGELLRKINQYL-LGKRYLIVMDDVWG-----E----DLAWWRRIYEGLPKGKGSSIIITTRNGKVS 304 (849)
Q Consensus 235 i~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~-----~----~~~~~~~l~~~l~~~~~s~ilvTtr~~~v~ 304 (849)
|..-+.+..-..+.++..+.+.+.+ +..+.+|++|.++. . ..+.-.-++++|..+.--.|--||-++- -
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EY-R 312 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEY-R 312 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHH-H
Confidence 1122222222224444444444444 34589999999865 1 1334455666666555445666665422 1
Q ss_pred hhcc-----ccccccccCCCCChhhHHHHHHHHh
Q 003086 305 QKMG-----VKKARMHFPKFLSEDDSWLLFRKIA 333 (849)
Q Consensus 305 ~~~~-----~~~~~~~~l~~L~~~e~~~lf~~~~ 333 (849)
.... ....+.+.+..-+.+++..+++-..
T Consensus 313 k~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 313 KYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 1111 1122688899999999999998765
No 238
>PHA00729 NTP-binding motif containing protein
Probab=96.90 E-value=0.0043 Score=61.22 Aligned_cols=33 Identities=36% Similarity=0.382 Sum_probs=25.5
Q ss_pred HHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 172 KIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 172 ~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+++.+... +...|.|+|.+|+||||||..+.+
T Consensus 7 ~~~~~l~~~--~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 7 KIVSAYNNN--GFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred HHHHHHhcC--CeEEEEEECCCCCCHHHHHHHHHH
Confidence 344444443 356799999999999999999987
No 239
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.90 E-value=0.0038 Score=62.35 Aligned_cols=86 Identities=14% Similarity=0.147 Sum_probs=52.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHh-c---CCC---CCCCHH---HHH
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNL-G---DAS---AGDDRG---ELL 252 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l-~---~~~---~~~~~~---~~~ 252 (849)
.-.++.|+|++|+|||++|..+... ....-..++|++... +++..+.+ +++.. . ... ...+.. ...
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 4679999999999999999998763 333446789999876 66655444 33322 0 000 011222 234
Q ss_pred HHHHHHhcC-ccEEEEEcCCC
Q 003086 253 RKINQYLLG-KRYLIVMDDVW 272 (849)
Q Consensus 253 ~~l~~~l~~-~~~LlVlDdv~ 272 (849)
..+.+.+.. +.-+||+|.+.
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcH
Confidence 444444433 45588888874
No 240
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.89 E-value=0.0012 Score=62.34 Aligned_cols=80 Identities=20% Similarity=0.242 Sum_probs=48.7
Q ss_pred ceEEecCCccccccccccccccCC-CCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcccCCcEe
Q 003086 560 LRVLDISRSIFELPLKGLLSQTGS-LQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRAL 638 (849)
Q Consensus 560 Lr~L~L~~~~~~~~~~~~p~~~~~-l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 638 (849)
=+.++|.+.++.. ...+|. +.+...+||++| .+..++. +..+..|.+|.|.+|.+...-|.--..+++|..|
T Consensus 21 e~e~~LR~lkip~-----ienlg~~~d~~d~iDLtdN-dl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L 93 (233)
T KOG1644|consen 21 ERELDLRGLKIPV-----IENLGATLDQFDAIDLTDN-DLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTL 93 (233)
T ss_pred ccccccccccccc-----hhhccccccccceeccccc-chhhccc-CCCccccceEEecCCcceeeccchhhhccccceE
Confidence 4556666665531 111222 345667788888 6666654 6777888888888655444444433356678888
Q ss_pred eccCCCCc
Q 003086 639 DVTHCGSL 646 (849)
Q Consensus 639 ~l~~~~~~ 646 (849)
.+.+|++.
T Consensus 94 ~LtnNsi~ 101 (233)
T KOG1644|consen 94 ILTNNSIQ 101 (233)
T ss_pred EecCcchh
Confidence 88877654
No 241
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.0073 Score=67.25 Aligned_cols=160 Identities=15% Similarity=0.130 Sum_probs=88.9
Q ss_pred CCCCCCccccccccHHHHHHHHhcc-----------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCC
Q 003086 156 PVYDHTLVVGLEGDTRKIKDWLFEA-----------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQ 224 (849)
Q Consensus 156 ~~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 224 (849)
|.+.-.++=|.++-++++.+.+.-+ -...+-|..+|+||.|||++|+.+.+. -+-.| +++..
T Consensus 429 p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne--~~~nF-----lsvkg 501 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE--AGMNF-----LSVKG 501 (693)
T ss_pred CCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh--hcCCe-----eeccC
Confidence 3344456667877777776555432 135678899999999999999999983 33333 34432
Q ss_pred ccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccC-----------HHHHHHHHhcCCCCC-Cc
Q 003086 225 TFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGED-----------LAWWRRIYEGLPKGK-GS 292 (849)
Q Consensus 225 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-----------~~~~~~l~~~l~~~~-~s 292 (849)
+ + +.....++++..+.+.+++.=+-.+.+++||.++.-. .....++..-+.... ..
T Consensus 502 p----E--------L~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k 569 (693)
T KOG0730|consen 502 P----E--------LFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALK 569 (693)
T ss_pred H----H--------HHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccC
Confidence 2 1 1111123445555555555545567999999985411 112223333332222 22
Q ss_pred eE--EEEe-cchhhhhhccc--cccccccCCCCChhhHHHHHHHHhh
Q 003086 293 SI--IITT-RNGKVSQKMGV--KKARMHFPKFLSEDDSWLLFRKIAF 334 (849)
Q Consensus 293 ~i--lvTt-r~~~v~~~~~~--~~~~~~~l~~L~~~e~~~lf~~~~~ 334 (849)
.| |-.| |...+-..+-. .-...+.+++-+.+...++|+.++-
T Consensus 570 ~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~k 616 (693)
T KOG0730|consen 570 NVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAK 616 (693)
T ss_pred cEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHh
Confidence 33 3333 33333222211 1125677777778888899998874
No 242
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.85 E-value=0.024 Score=55.31 Aligned_cols=107 Identities=17% Similarity=0.228 Sum_probs=67.4
Q ss_pred CCCccccccccHHHHHHHHhc--cCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHH
Q 003086 159 DHTLVVGLEGDTRKIKDWLFE--AEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSML 236 (849)
Q Consensus 159 ~~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 236 (849)
+-..++|.|...+.+++--.. .+...--|.+||.-|+||++|++.+.+ .+....-. -|.|... ++
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k~----dl----- 124 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDKE----DL----- 124 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcHH----HH-----
Confidence 334689999998888764332 122345688999999999999999988 34444433 2333321 00
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCc-cCHHHHHHHHhcCCCC
Q 003086 237 RNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWG-EDLAWWRRIYEGLPKG 289 (849)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~ 289 (849)
.+...+.+.|+. ...||+|+.||+.- ++...+..++..+..+
T Consensus 125 ---------~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ 167 (287)
T COG2607 125 ---------ATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGG 167 (287)
T ss_pred ---------hhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCC
Confidence 012222222222 46899999999954 3466788888877653
No 243
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.84 E-value=0.0056 Score=65.37 Aligned_cols=130 Identities=12% Similarity=0.176 Sum_probs=71.9
Q ss_pred cccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHH-HHHHhcC
Q 003086 163 VVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRS-MLRNLGD 241 (849)
Q Consensus 163 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~-i~~~l~~ 241 (849)
++|....++++.+.+..-......|.|+|..|+||+++|+.+.+...- .-...+-|+|+... ...+.. +...-.+
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r--~~~pfv~vnc~~~~--~~~l~~~lfG~~~g 76 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKR--WQGPLVKLNCAALS--ENLLDSELFGHEAG 76 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCc--cCCCeEEEeCCCCC--hHHHHHHHhccccc
Confidence 467777888888777664333456899999999999999999763211 11223445555322 222222 2111111
Q ss_pred CCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCCC------------CceEEEEecc
Q 003086 242 ASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK------------GSSIIITTRN 300 (849)
Q Consensus 242 ~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------~s~ilvTtr~ 300 (849)
...+.... ....+. ....=.|+||++..........+...+..+. ..+||.||..
T Consensus 77 ~~~ga~~~-~~G~~~---~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~ 143 (329)
T TIGR02974 77 AFTGAQKR-HQGRFE---RADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNA 143 (329)
T ss_pred cccCcccc-cCCchh---hCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechh
Confidence 11111000 000011 1223469999998877777778877765432 3477877753
No 244
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.82 E-value=0.041 Score=54.80 Aligned_cols=228 Identities=11% Similarity=0.104 Sum_probs=132.1
Q ss_pred cccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcC----hhhhcccCceEEEEeCCc-------------
Q 003086 163 VVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFND----REIENWFERRMWVSVSQT------------- 225 (849)
Q Consensus 163 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~----~~~~~~f~~~~wv~~s~~------------- 225 (849)
+.++++....+....... +.+...++|+.|.||-|.+..+.+. .-.+-+-+...|.+-|..
T Consensus 15 l~~~~e~~~~Lksl~~~~--d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHl 92 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSSTG--DFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHL 92 (351)
T ss_pred cccHHHHHHHHHHhcccC--CCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceE
Confidence 556666666776665533 4778899999999999987666542 111223344555544332
Q ss_pred --------cCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcC-ccE-EEEEcCCCccCHHHHHHHHhcCCC-CCCceE
Q 003086 226 --------FTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLG-KRY-LIVMDDVWGEDLAWWRRIYEGLPK-GKGSSI 294 (849)
Q Consensus 226 --------~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~-~~~-LlVlDdv~~~~~~~~~~l~~~l~~-~~~s~i 294 (849)
..-+-+.++|+..+....+-+ ..+ +.| ++|+-.++.-+.+....++..... .+.+|+
T Consensus 93 EitPSDaG~~DRvViQellKevAQt~qie------------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~Rl 160 (351)
T KOG2035|consen 93 EITPSDAGNYDRVVIQELLKEVAQTQQIE------------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRL 160 (351)
T ss_pred EeChhhcCcccHHHHHHHHHHHHhhcchh------------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceE
Confidence 011223344444333222100 112 233 677777777666666666665544 336777
Q ss_pred EEEecc-hhhhhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHhhhhhc
Q 003086 295 IITTRN-GKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVGGMMLY 373 (849)
Q Consensus 295 lvTtr~-~~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l~~ 373 (849)
|+...+ ..+........ ..+.+...+++|....+.+..-..+ ..-..+++.+|+++++|.---+..+...++-
T Consensus 161 Il~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~-----l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~ 234 (351)
T KOG2035|consen 161 ILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEG-----LQLPKELLKRIAEKSNRNLRRALLMLEAVRV 234 (351)
T ss_pred EEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhc-----ccCcHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 765543 22333333333 5678899999999999998874332 2223789999999999876544444333321
Q ss_pred --C-------CCChHHHHHHHHhhhhhhcc--CCchHHHHHHHhhhCC
Q 003086 374 --K-------PPTYNEWRRTADNFRDELAE--NDDSVMASLQLSYDEL 410 (849)
Q Consensus 374 --~-------~~~~~~w~~~~~~~~~~~~~--~~~~~~~~l~~sy~~L 410 (849)
. ..+.-+|+-.+.+....+-. ....+..+-..-|+-|
T Consensus 235 ~n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 235 NNEPFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred ccccccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 1 11345899988887765543 2555555555555544
No 245
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.75 E-value=0.0037 Score=70.04 Aligned_cols=86 Identities=20% Similarity=0.170 Sum_probs=63.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHh--c
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYL--L 260 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l--~ 260 (849)
.-++..++|++|+||||||+-|++..- ..++=|++|+.-++..+-..|...+..... + .
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG-----YsVvEINASDeRt~~~v~~kI~~avq~~s~--------------l~ad 385 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG-----YSVVEINASDERTAPMVKEKIENAVQNHSV--------------LDAD 385 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC-----ceEEEecccccccHHHHHHHHHHHHhhccc--------------cccC
Confidence 468999999999999999999987422 136778888888877777777666544322 2 2
Q ss_pred CccEEEEEcCCCccCHHHHHHHHhcCC
Q 003086 261 GKRYLIVMDDVWGEDLAWWRRIYEGLP 287 (849)
Q Consensus 261 ~~~~LlVlDdv~~~~~~~~~~l~~~l~ 287 (849)
+++.-||+|.++.......+.++..+.
T Consensus 386 srP~CLViDEIDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGAPRAAVDVILSLVK 412 (877)
T ss_pred CCcceEEEecccCCcHHHHHHHHHHHH
Confidence 678889999998876666666665544
No 246
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.73 E-value=0.0045 Score=66.16 Aligned_cols=132 Identities=11% Similarity=0.136 Sum_probs=75.7
Q ss_pred ccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcC
Q 003086 162 LVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGD 241 (849)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 241 (849)
.++|+...++++.+.+..-.....-|.|+|..|+||+++|+.+...... .-...+.|+|+... ...+-..+...-..
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r--~~~pfv~v~c~~~~-~~~~~~~lfg~~~~ 83 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSR--WQGPFISLNCAALN-ENLLDSELFGHEAG 83 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCc--cCCCeEEEeCCCCC-HHHHHHHHcccccc
Confidence 5899999999998888765333456889999999999999998752110 11223455555432 22222222211111
Q ss_pred CCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCCC------------CceEEEEecc
Q 003086 242 ASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK------------GSSIIITTRN 300 (849)
Q Consensus 242 ~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------~s~ilvTtr~ 300 (849)
...+... .....+. ....=.|+||++.......+..+...+..+. ..+||.||..
T Consensus 84 ~~~g~~~-~~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~ 150 (326)
T PRK11608 84 AFTGAQK-RHPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (326)
T ss_pred ccCCccc-ccCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch
Confidence 1111110 0011111 1122358899999877778888877765432 2577887754
No 247
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.73 E-value=0.011 Score=58.13 Aligned_cols=107 Identities=18% Similarity=0.181 Sum_probs=55.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH-h---
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQY-L--- 259 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~-l--- 259 (849)
-+++.|.|.+|.||||+++.+... ....=..++++..+ . .....+.+..+.... +........... .
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~--~~~~g~~v~~~apT-~----~Aa~~L~~~~~~~a~--Ti~~~l~~~~~~~~~~~ 88 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEA--LEAAGKRVIGLAPT-N----KAAKELREKTGIEAQ--TIHSFLYRIPNGDDEGR 88 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHH--HHHTT--EEEEESS-H----HHHHHHHHHHTS-EE--EHHHHTTEECCEECCSS
T ss_pred CeEEEEEECCCCCHHHHHHHHHHH--HHhCCCeEEEECCc-H----HHHHHHHHhhCcchh--hHHHHHhcCCccccccc
Confidence 357888999999999999998763 22221223343322 2 222223333322110 111000000000 0
Q ss_pred --cCccEEEEEcCCCccCHHHHHHHHhcCCCCCCceEEEEecc
Q 003086 260 --LGKRYLIVMDDVWGEDLAWWRRIYEGLPKGKGSSIIITTRN 300 (849)
Q Consensus 260 --~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~s~ilvTtr~ 300 (849)
..++-+||+|++...+...+..+....+. .+.|+|+.-=.
T Consensus 89 ~~~~~~~vliVDEasmv~~~~~~~ll~~~~~-~~~klilvGD~ 130 (196)
T PF13604_consen 89 PELPKKDVLIVDEASMVDSRQLARLLRLAKK-SGAKLILVGDP 130 (196)
T ss_dssp CC-TSTSEEEESSGGG-BHHHHHHHHHHS-T--T-EEEEEE-T
T ss_pred ccCCcccEEEEecccccCHHHHHHHHHHHHh-cCCEEEEECCc
Confidence 13345999999988777888888877764 47788876643
No 248
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.013 Score=59.39 Aligned_cols=81 Identities=14% Similarity=0.295 Sum_probs=49.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChh--hhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcC
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDRE--IENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLG 261 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~--~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 261 (849)
-++|.++|+||.|||+|++.++..-. ..+.+....-+.++. ..++.+.... .+.-...+.+.+.+.+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsE-----SgKlV~kmF~kI~ELv~d 247 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSE-----SGKLVAKMFQKIQELVED 247 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhh-----hhhHHHHHHHHHHHHHhC
Confidence 58899999999999999999988633 334454444444432 2222222211 122445566666676655
Q ss_pred cc--EEEEEcCCCc
Q 003086 262 KR--YLIVMDDVWG 273 (849)
Q Consensus 262 ~~--~LlVlDdv~~ 273 (849)
+. +++.+|.|..
T Consensus 248 ~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 248 RGNLVFVLIDEVES 261 (423)
T ss_pred CCcEEEEEeHHHHH
Confidence 44 5677898843
No 249
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.013 Score=64.54 Aligned_cols=157 Identities=14% Similarity=0.259 Sum_probs=90.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCcc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKR 263 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 263 (849)
..=|.++|++|.|||-||+.|+|. .+-+ |++|-.+ +++... .+.++..+.+.+.+.-..-+
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANE--ag~N-----FisVKGP----ELlNkY--------VGESErAVR~vFqRAR~saP 605 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANE--AGAN-----FISVKGP----ELLNKY--------VGESERAVRQVFQRARASAP 605 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhh--ccCc-----eEeecCH----HHHHHH--------hhhHHHHHHHHHHHhhcCCC
Confidence 445789999999999999999995 3333 4555433 111111 13344555555555556789
Q ss_pred EEEEEcCCCc-----c------CHHHHHHHHhcCCC---CCCceEEEEecchhhhhh-cc-c-cccccccCCCCChhhHH
Q 003086 264 YLIVMDDVWG-----E------DLAWWRRIYEGLPK---GKGSSIIITTRNGKVSQK-MG-V-KKARMHFPKFLSEDDSW 326 (849)
Q Consensus 264 ~LlVlDdv~~-----~------~~~~~~~l~~~l~~---~~~s~ilvTtr~~~v~~~-~~-~-~~~~~~~l~~L~~~e~~ 326 (849)
++|+||.++. . ......+++.-+.. ..|--||-.|...++... +- . .-.....+..-+.+|-.
T Consensus 606 CVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~ 685 (802)
T KOG0733|consen 606 CVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERV 685 (802)
T ss_pred eEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHH
Confidence 9999999854 0 11223444444432 226667776655444322 11 1 11145666777888999
Q ss_pred HHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCch
Q 003086 327 LLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLP 361 (849)
Q Consensus 327 ~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 361 (849)
++++...-....+.....+++++++. .+|.|.-
T Consensus 686 ~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 686 AILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 99988874322222234455555542 3566665
No 250
>PTZ00494 tuzin-like protein; Provisional
Probab=96.72 E-value=0.13 Score=55.00 Aligned_cols=168 Identities=14% Similarity=0.133 Sum_probs=107.2
Q ss_pred CCCCccccccccHHHHHHHHhccC-CCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHH
Q 003086 158 YDHTLVVGLEGDTRKIKDWLFEAE-EGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSML 236 (849)
Q Consensus 158 ~~~~~~vGr~~~~~~l~~~L~~~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 236 (849)
..+..+|.|+++-..+.+.|.+-+ ..++++.+.|.-|.||++|.+.....+. -..++|.+... ++-++.+.
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~-----~paV~VDVRg~---EDtLrsVV 439 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEG-----VALVHVDVGGT---EDTLRSVV 439 (664)
T ss_pred cccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcC-----CCeEEEEecCC---cchHHHHH
Confidence 345678999999888888887643 4689999999999999999998866422 24678888754 55688889
Q ss_pred HHhcCCCC---CCCHHHHHHHHHH---HhcCccEEEEEcCCCccC-HHHHHHHHhcCCCCCCceEEEEecchhhhhhccc
Q 003086 237 RNLGDASA---GDDRGELLRKINQ---YLLGKRYLIVMDDVWGED-LAWWRRIYEGLPKGKGSSIIITTRNGKVSQKMGV 309 (849)
Q Consensus 237 ~~l~~~~~---~~~~~~~~~~l~~---~l~~~~~LlVlDdv~~~~-~~~~~~l~~~l~~~~~s~ilvTtr~~~v~~~~~~ 309 (849)
+.++.+.. ++-.+-+.+..+. ...++.-+||+-==...+ ...+.+....--+..-+.|++----+.+......
T Consensus 440 KALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~vaLacDrRlCHvv~EVplESLT~~n~~ 519 (664)
T PTZ00494 440 RALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVSLVSDCQACHIVLAVPMKALTPLNVS 519 (664)
T ss_pred HHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHHHHccchhheeeeechHhhhchhhcc
Confidence 99988754 4444433333333 245666666664221111 1222233222222337788876655444332221
Q ss_pred -cccccccCCCCChhhHHHHHHHHh
Q 003086 310 -KKARMHFPKFLSEDDSWLLFRKIA 333 (849)
Q Consensus 310 -~~~~~~~l~~L~~~e~~~lf~~~~ 333 (849)
..-..|-+.+++.++|.++.++..
T Consensus 520 LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 520 SRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred CccceeEecCCcCHHHHHHHHhccc
Confidence 111467889999999999988775
No 251
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.71 E-value=0.013 Score=59.41 Aligned_cols=88 Identities=16% Similarity=0.194 Sum_probs=55.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcChhhhccc------CceEEEEeCCccCHHHHHHHHHHHhcCCC----------CCC
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFNDREIENWF------ERRMWVSVSQTFTEEQIMRSMLRNLGDAS----------AGD 246 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f------~~~~wv~~s~~~~~~~~~~~i~~~l~~~~----------~~~ 246 (849)
.-.++.|+|.+|+|||+||..++... ...- ..++|++....++...+. ++.+...... ...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCC
Confidence 45799999999999999999986532 1122 457899988777765543 3333322210 123
Q ss_pred CHHHHHHHHHHHhc----CccEEEEEcCCCc
Q 003086 247 DRGELLRKINQYLL----GKRYLIVMDDVWG 273 (849)
Q Consensus 247 ~~~~~~~~l~~~l~----~~~~LlVlDdv~~ 273 (849)
+.+++...+.+... .+.-+||+|.+..
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 55555555555442 3455899999843
No 252
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.68 E-value=0.0077 Score=63.22 Aligned_cols=84 Identities=20% Similarity=0.206 Sum_probs=57.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCC------CCCCHHHHHHHH
Q 003086 182 EGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDAS------AGDDRGELLRKI 255 (849)
Q Consensus 182 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l 255 (849)
+.-+++-|+|++|+||||||.++... ....-..++|++..+.++.. .++.++... .+.+.++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 34679999999999999999988763 33334557899887766653 345555432 134566666666
Q ss_pred HHHhc-CccEEEEEcCCC
Q 003086 256 NQYLL-GKRYLIVMDDVW 272 (849)
Q Consensus 256 ~~~l~-~~~~LlVlDdv~ 272 (849)
....+ +..-+||+|.+-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55553 456799999984
No 253
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.66 E-value=0.0014 Score=69.23 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=40.0
Q ss_pred ccccccccHHHHHHHHhcc----CCCeEEEEEEcCCCCcHHHHHHHHhcC
Q 003086 162 LVVGLEGDTRKIKDWLFEA----EEGILAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
+++|.++.++++++++... +...+++.|+|++|.||||||+.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999998763 234688999999999999999999774
No 254
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.63 E-value=0.012 Score=67.25 Aligned_cols=134 Identities=13% Similarity=0.160 Sum_probs=79.2
Q ss_pred CCccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHh
Q 003086 160 HTLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNL 239 (849)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 239 (849)
...++|....++++.+.+..-......|.|+|..|+|||++|+.+.+... ..-...+.|+|+.-.+ ..+-..+....
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~--r~~~p~v~v~c~~~~~-~~~e~~lfG~~ 262 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP--RADKPLVYLNCAALPE-SLAESELFGHV 262 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC--cCCCCeEEEEcccCCh-HHHHHHhcCcc
Confidence 35689999999999988877544456789999999999999999987421 1112345666664432 11111221111
Q ss_pred cCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCCC------------CceEEEEecc
Q 003086 240 GDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK------------GSSIIITTRN 300 (849)
Q Consensus 240 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------~s~ilvTtr~ 300 (849)
.+...+.... ....+. . ...=.|+||++.......+..+...+..+. ..+||.||..
T Consensus 263 ~g~~~ga~~~-~~g~~~-~--a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 263 KGAFTGAISN-RSGKFE-L--ADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred ccccCCCccc-CCcchh-h--cCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 1111111100 000111 1 122347999999877888888888775432 3478888864
No 255
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.62 E-value=0.011 Score=56.10 Aligned_cols=40 Identities=28% Similarity=0.328 Sum_probs=29.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccC
Q 003086 186 AIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFT 227 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 227 (849)
++.|+|.+|+||||++..+... ....-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 3689999999999999999773 222335577887765543
No 256
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.62 E-value=0.0083 Score=63.02 Aligned_cols=84 Identities=20% Similarity=0.213 Sum_probs=57.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCC------CCCCHHHHHHHH
Q 003086 182 EGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDAS------AGDDRGELLRKI 255 (849)
Q Consensus 182 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l 255 (849)
+.-+++-|+|++|+||||||.+++.. ....-..++||+..+.+++. .++.++... .+.+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 34678999999999999999998763 33344568899988777653 344454432 134566666666
Q ss_pred HHHhc-CccEEEEEcCCC
Q 003086 256 NQYLL-GKRYLIVMDDVW 272 (849)
Q Consensus 256 ~~~l~-~~~~LlVlDdv~ 272 (849)
...+. +..-+||+|.+-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 55553 456799999974
No 257
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.61 E-value=0.0015 Score=76.29 Aligned_cols=105 Identities=23% Similarity=0.181 Sum_probs=53.3
Q ss_pred CCCcEEeeccccC-CccCChhhh-cccCCcEeeccCCCCcc-ccCccccccccccccCcccccCCCCCCCCCchhhhccc
Q 003086 609 KNLQILDVSYCQN-LKMLPSYVQ-SFIQLRALDVTHCGSLQ-YLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLT 685 (849)
Q Consensus 609 ~~L~~L~L~~~~~-~~~lp~~i~-~l~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~ 685 (849)
.+||+||+++... ....|..++ .||+|+.|.+.+-.+.. .+-.-..++++|..|++++... .....+++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI------~nl~GIS~Lk 195 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI------SNLSGISRLK 195 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc------cCcHHHhccc
Confidence 4677777776543 233445555 46777777776644321 1111123455566665544421 1224555666
Q ss_pred cccceeeeeccCcccch-HhhcCCCCCCeEEEEee
Q 003086 686 RLRKLGLQLTCGDEIEE-DALVNLRELQFLSISCF 719 (849)
Q Consensus 686 ~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~L~~~ 719 (849)
+|+.|.+.+..+..... ..+..+++|+.|++|..
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 66666665544333221 34555666666666543
No 258
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.61 E-value=0.0005 Score=60.58 Aligned_cols=94 Identities=18% Similarity=0.261 Sum_probs=77.2
Q ss_pred hhhhcCCCcceEEecCCccccccccccccccC-CCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhh
Q 003086 551 ATKFSECRYLRVLDISRSIFELPLKGLLSQTG-SLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYV 629 (849)
Q Consensus 551 ~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~-~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i 629 (849)
+..+.....|...+|++|.+. .+|+.|. +.+.+..|+|++| .+..+|..+..++.|+.|++++|+ +...|..|
T Consensus 46 vy~l~~~~el~~i~ls~N~fk----~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi 119 (177)
T KOG4579|consen 46 VYMLSKGYELTKISLSDNGFK----KFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNP-LNAEPRVI 119 (177)
T ss_pred HHHHhCCceEEEEecccchhh----hCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCc-cccchHHH
Confidence 344567788999999999997 6787774 4568999999999 899999999999999999999655 66788888
Q ss_pred hcccCCcEeeccCCCCccccCc
Q 003086 630 QSFIQLRALDVTHCGSLQYLPK 651 (849)
Q Consensus 630 ~~l~~L~~L~l~~~~~~~~~p~ 651 (849)
..|.+|-.|+..+|... .+|.
T Consensus 120 ~~L~~l~~Lds~~na~~-eid~ 140 (177)
T KOG4579|consen 120 APLIKLDMLDSPENARA-EIDV 140 (177)
T ss_pred HHHHhHHHhcCCCCccc-cCcH
Confidence 88999999998888765 3443
No 259
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.61 E-value=0.0096 Score=59.89 Aligned_cols=43 Identities=19% Similarity=0.142 Sum_probs=32.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccC
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFT 227 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 227 (849)
.-.++.|.|.+|+||||+|.+++.. ....-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 4578999999999999999998763 222334578887765553
No 260
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.59 E-value=0.0054 Score=62.73 Aligned_cols=80 Identities=20% Similarity=0.291 Sum_probs=48.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCcc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKR 263 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 263 (849)
..-+.++|.+|+|||.||..+.+. ....--.+.++++ .+++.++...... +.....+...+. +-
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~~------~el~~~Lk~~~~~---~~~~~~l~~~l~-----~~ 168 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFITA------PDLLSKLKAAFDE---GRLEEKLLRELK-----KV 168 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEEH------HHHHHHHHHHHhc---CchHHHHHHHhh-----cC
Confidence 457899999999999999999995 3333234666654 3556666555543 111222222222 23
Q ss_pred EEEEEcCCCccCHHHH
Q 003086 264 YLIVMDDVWGEDLAWW 279 (849)
Q Consensus 264 ~LlVlDdv~~~~~~~~ 279 (849)
=||||||+-......|
T Consensus 169 dlLIiDDlG~~~~~~~ 184 (254)
T COG1484 169 DLLIIDDIGYEPFSQE 184 (254)
T ss_pred CEEEEecccCccCCHH
Confidence 4999999965433333
No 261
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.58 E-value=0.039 Score=52.54 Aligned_cols=77 Identities=16% Similarity=0.264 Sum_probs=45.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCC----CCCHHHHHHHHHHHhcCc
Q 003086 187 IGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASA----GDDRGELLRKINQYLLGK 262 (849)
Q Consensus 187 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~l~~~l~~~ 262 (849)
+.|.|.+|.|||++|..+... ....++++.-...++.+ +...|...-..... .+....+.+.+.+. . +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~-~-~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKEL-D-P 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHhc-C-C
Confidence 678999999999999998653 23467788777777653 44444443222211 11223333333221 2 2
Q ss_pred cEEEEEcCC
Q 003086 263 RYLIVMDDV 271 (849)
Q Consensus 263 ~~LlVlDdv 271 (849)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 337999987
No 262
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.57 E-value=0.0081 Score=61.25 Aligned_cols=89 Identities=17% Similarity=0.243 Sum_probs=53.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcChhhhcc----cCceEEEEeCCccCHHHHHHHHHHHhcCCCC----------CCCH
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFNDREIENW----FERRMWVSVSQTFTEEQIMRSMLRNLGDASA----------GDDR 248 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----------~~~~ 248 (849)
.-.++.|+|.+|+|||+||..++........ -..++|++....++...+ .++++..+.... ..+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCCH
Confidence 4579999999999999999998643222211 357899998887775544 334444332211 1122
Q ss_pred HH---HHHHHHHHh-cC-ccEEEEEcCCC
Q 003086 249 GE---LLRKINQYL-LG-KRYLIVMDDVW 272 (849)
Q Consensus 249 ~~---~~~~l~~~l-~~-~~~LlVlDdv~ 272 (849)
++ ....+.+.+ +. +.-+||+|.+.
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 22 333444444 23 56688888874
No 263
>PRK09354 recA recombinase A; Provisional
Probab=96.56 E-value=0.01 Score=62.78 Aligned_cols=84 Identities=19% Similarity=0.204 Sum_probs=58.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCC------CCCCHHHHHHHH
Q 003086 182 EGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDAS------AGDDRGELLRKI 255 (849)
Q Consensus 182 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l 255 (849)
+.-+++-|+|++|+||||||.+++.. ....-..++||+..+.+++. .++.++... .+++.++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 34679999999999999999988763 33344568899988877753 445555432 234566666666
Q ss_pred HHHhc-CccEEEEEcCCC
Q 003086 256 NQYLL-GKRYLIVMDDVW 272 (849)
Q Consensus 256 ~~~l~-~~~~LlVlDdv~ 272 (849)
...++ +..-+||+|-+-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 65553 456799999984
No 264
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.55 E-value=0.0016 Score=58.51 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003086 186 AIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~ 206 (849)
+|+|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999977
No 265
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.53 E-value=0.00014 Score=75.85 Aligned_cols=283 Identities=16% Similarity=0.100 Sum_probs=140.1
Q ss_pred cCccchhcccccccccchhhhhhhhhcCCCcceEEecCCcc-cccccccccccc-CCCCccceEeccCCCCCcccC--cc
Q 003086 529 LKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSI-FELPLKGLLSQT-GSLQHLSYLCLSNTHPLIHLP--PS 604 (849)
Q Consensus 529 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-~~~~~~~~p~~~-~~l~~Lr~L~L~~~~~~~~lp--~~ 604 (849)
..+|.+.+.+.... -...+...-..+++++.|++.++. ++ +....++ ..+.+|++|+|..|..++... .-
T Consensus 138 g~lk~LSlrG~r~v---~~sslrt~~~~CpnIehL~l~gc~~iT---d~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l 211 (483)
T KOG4341|consen 138 GFLKELSLRGCRAV---GDSSLRTFASNCPNIEHLALYGCKKIT---DSSLLSLARYCRKLRHLNLHSCSSITDVSLKYL 211 (483)
T ss_pred cccccccccccccC---CcchhhHHhhhCCchhhhhhhcceecc---HHHHHHHHHhcchhhhhhhcccchhHHHHHHHH
Confidence 34555655553211 112334445778888888888876 22 1112222 357888888888875555422 12
Q ss_pred ccCCCCCcEEeeccccCCcc--CChhhhcccCCcEeeccCCCCccccCccc----cccccccccCcccccCCCCCCCCC-
Q 003086 605 LKKLKNLQILDVSYCQNLKM--LPSYVQSFIQLRALDVTHCGSLQYLPKGF----GKLLNLEVLLGFRPARSSQPEGCR- 677 (849)
Q Consensus 605 i~~L~~L~~L~L~~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~i----~~l~~L~~L~~~~~~~~~~~~~~~- 677 (849)
...+++|.+|+++.|+.+.. +-.-..+++.|+.+.+.+|.-.+ -..+ +....+-++++..+. ..+...
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~---~lTD~~~ 286 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCN---QLTDEDL 286 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhc---cccchHH
Confidence 34678888888887764433 11122344455555555543210 0011 111112222211221 111111
Q ss_pred chhhhccccccceeeeeccCcccch----HhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCC
Q 003086 678 ISELKNLTRLRKLGLQLTCGDEIEE----DALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSP 753 (849)
Q Consensus 678 ~~~l~~l~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p 753 (849)
...-..+..|+.|..+++. ...+ +--.+..+|+.|.++.+..-+..-+.. .-.+++.|+.+++.........
T Consensus 287 ~~i~~~c~~lq~l~~s~~t--~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~--l~rn~~~Le~l~~e~~~~~~d~ 362 (483)
T KOG4341|consen 287 WLIACGCHALQVLCYSSCT--DITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTM--LGRNCPHLERLDLEECGLITDG 362 (483)
T ss_pred HHHhhhhhHhhhhcccCCC--CCchHHHHHHhcCCCceEEEeccccchhhhhhhhh--hhcCChhhhhhcccccceehhh
Confidence 1112245677777777663 2222 223356888888887664211111111 1235677887877654332211
Q ss_pred CcCC-CCCCCCCceEEEeeCCc-cccccccccC--cccccccceeecccccccccccccccccccccceeeecccccC
Q 003086 754 VWLN-PASLPMLRYLSVCSGNL-SKMHDSFWGE--NNTVWKIEALLFESLSDLGIEWTRLQGVMPSLHIVNASWCPEL 827 (849)
Q Consensus 754 ~~~~-~~~l~~L~~L~L~~n~l-~~~~~~~~~~--~~fp~~L~~L~l~~l~~L~l~~~~~~~~~p~L~~L~i~~c~~L 827 (849)
.... ..++|.|+.|.|+++.+ ++.+...++. .+.- .|+.|.+.+++.+.-..-......++|+.+++.+|...
T Consensus 363 tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~-~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 363 TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLE-GLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred hHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccc-ccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 1111 16788899998887643 3322222221 1333 67777777777665111112234667777777766543
No 266
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.52 E-value=0.057 Score=55.40 Aligned_cols=171 Identities=16% Similarity=0.177 Sum_probs=95.7
Q ss_pred CccccccccHHHHHHHHhcc--CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCH-HHHHHHHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEA--EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTE-EQIMRSMLR 237 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~-~~~~~~i~~ 237 (849)
..++|-.++.+.+-+++.+. .+....|.|+|+.|.|||+|...+..+ .+..=+...-|...+..-. .-.++.|.+
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~--~q~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD--IQENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh--HHhcCCeEEEEEECccchhhHHHHHHHHH
Confidence 35889999999998888763 223456789999999999999888876 2222233344555544322 224455555
Q ss_pred HhcCCC----C-CCCHHHHHHHHHHHh------cCccEEEEEcCCCccC-HHHHHHHHhcCCC-----CCCceEEEEecc
Q 003086 238 NLGDAS----A-GDDRGELLRKINQYL------LGKRYLIVMDDVWGED-LAWWRRIYEGLPK-----GKGSSIIITTRN 300 (849)
Q Consensus 238 ~l~~~~----~-~~~~~~~~~~l~~~l------~~~~~LlVlDdv~~~~-~~~~~~l~~~l~~-----~~~s~ilvTtr~ 300 (849)
++.... . ..+..+....+-..| .+-++++|+|+++-.. ......+...|.- .+-+-|-+|||-
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 553321 1 123333333333333 2235888888886522 2222233333321 225667889985
Q ss_pred hhh---hhhccc--cccccccCCCCChhhHHHHHHHHh
Q 003086 301 GKV---SQKMGV--KKARMHFPKFLSEDDSWLLFRKIA 333 (849)
Q Consensus 301 ~~v---~~~~~~--~~~~~~~l~~L~~~e~~~lf~~~~ 333 (849)
... .+.+.. .+..++-++.++-++...+++...
T Consensus 182 d~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 182 DILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 322 122221 111245556778888888887776
No 267
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.48 E-value=0.017 Score=57.98 Aligned_cols=123 Identities=18% Similarity=0.172 Sum_probs=75.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCC-----ccCHHHHHHHHHHHhcCCCC-------CCCHHHH
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQ-----TFTEEQIMRSMLRNLGDASA-------GDDRGEL 251 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-----~~~~~~~~~~i~~~l~~~~~-------~~~~~~~ 251 (849)
..+++|||..|.||||+++.+..= ...-...+++.-.+ .....+-..++++.++.... .-+-.+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L---~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGL---EEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcC---cCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 358999999999999999999762 22222233332111 22234556677777775432 1133333
Q ss_pred H-HHHHHHhcCccEEEEEcCCCc-cCHHHHHHHHhcCCC---CCCceEEEEecchhhhhhccc
Q 003086 252 L-RKINQYLLGKRYLIVMDDVWG-EDLAWWRRIYEGLPK---GKGSSIIITTRNGKVSQKMGV 309 (849)
Q Consensus 252 ~-~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~---~~~s~ilvTtr~~~v~~~~~~ 309 (849)
+ -.+.+.|.-++-++|.|+.-+ .+.....++...+.+ ..|-..++-|-+-.++..+..
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 3 235567788889999999754 234334445444433 337888888888777776654
No 268
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.43 E-value=0.012 Score=57.54 Aligned_cols=87 Identities=18% Similarity=0.213 Sum_probs=53.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCC-ccCHHHHHHHHHHHhcCCCC----CCCHHHHH-HHHHH
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQ-TFTEEQIMRSMLRNLGDASA----GDDRGELL-RKINQ 257 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~----~~~~~~~~-~~l~~ 257 (849)
+++|.++|+.|+||||.+.+++.. .+.+-..+..++... .....+-++..++.++.+.. ..+..+.. +.+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~--~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAAR--LKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHH--HhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 368999999999999999888773 333333467777653 23455677788888876532 22333433 33443
Q ss_pred HhcCccEEEEEcCCC
Q 003086 258 YLLGKRYLIVMDDVW 272 (849)
Q Consensus 258 ~l~~~~~LlVlDdv~ 272 (849)
.-..+.=+|++|=.-
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 323333488888764
No 269
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.38 E-value=0.17 Score=53.05 Aligned_cols=152 Identities=8% Similarity=0.001 Sum_probs=91.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcCh--------hhhcccCceEEEEe-CCccCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFNDR--------EIENWFERRMWVSV-SQTFTEEQIMRSMLRNLGDASAGDDRGELLR 253 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~~--------~~~~~f~~~~wv~~-s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 253 (849)
-.++..++|..|+||+++|..+.+.- ....|-+.+.++.. .... ..+++.+
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i--------------------~vd~Ir~ 76 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDL--------------------SKSEFLS 76 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcC--------------------CHHHHHH
Confidence 34677799999999999998886521 00111112333321 1112 2223332
Q ss_pred HHHHH--h---cCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEe-cchhhhhhccccccccccCCCCChhhHH
Q 003086 254 KINQY--L---LGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITT-RNGKVSQKMGVKKARMHFPKFLSEDDSW 326 (849)
Q Consensus 254 ~l~~~--l---~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTt-r~~~v~~~~~~~~~~~~~l~~L~~~e~~ 326 (849)
...+. . .+.+-++|+|++...+......+...+.+-+ ++.+|++| ....+...+...+ ..+++.++++++..
T Consensus 77 l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc-~~~~f~~l~~~~l~ 155 (299)
T PRK07132 77 AINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRC-QVFNVKEPDQQKIL 155 (299)
T ss_pred HHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCe-EEEECCCCCHHHHH
Confidence 22221 1 1577899999998777778888998888766 66666655 4445544433333 68999999999998
Q ss_pred HHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHH
Q 003086 327 LLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKA 366 (849)
Q Consensus 327 ~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~ 366 (849)
+.+.... . .++.++.++...+|.--|+..
T Consensus 156 ~~l~~~~---~--------~~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 156 AKLLSKN---K--------EKEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred HHHHHcC---C--------ChhHHHHHHHHcCCHHHHHHH
Confidence 8776541 1 124456666667763345544
No 270
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.36 E-value=0.024 Score=52.63 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003086 186 AIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~ 206 (849)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999875
No 271
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.14 Score=50.06 Aligned_cols=149 Identities=17% Similarity=0.157 Sum_probs=85.1
Q ss_pred cccccHHHHHHHHhccC-----------CCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHH
Q 003086 165 GLEGDTRKIKDWLFEAE-----------EGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMR 233 (849)
Q Consensus 165 Gr~~~~~~l~~~L~~~~-----------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 233 (849)
|.+..+++|.+.+.-+- ..++-|.++|++|.|||-||+.|+++ ...-|+-||... +
T Consensus 151 gLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgse----l-- 217 (404)
T KOG0728|consen 151 GLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGSE----L-- 217 (404)
T ss_pred cHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechHH----H--
Confidence 56777777766654321 24567889999999999999999874 234566676432 1
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHh-cCccEEEEEcCCCc-----------cCHHHHHHHHhcCC------CCCCceEE
Q 003086 234 SMLRNLGDASAGDDRGELLRKINQYL-LGKRYLIVMDDVWG-----------EDLAWWRRIYEGLP------KGKGSSII 295 (849)
Q Consensus 234 ~i~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~-----------~~~~~~~~l~~~l~------~~~~s~il 295 (849)
.+...+ +-......+.-.- ..-+.+|+.|.+++ .+.+......+.+. ...+-+||
T Consensus 218 --vqk~ig-----egsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvi 290 (404)
T KOG0728|consen 218 --VQKYIG-----EGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVI 290 (404)
T ss_pred --HHHHhh-----hhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEE
Confidence 111111 1112222221111 24567888898854 12333333333332 23377899
Q ss_pred EEecchhhhhhcc---ccccccccCCCCChhhHHHHHHHHh
Q 003086 296 ITTRNGKVSQKMG---VKKARMHFPKFLSEDDSWLLFRKIA 333 (849)
Q Consensus 296 vTtr~~~v~~~~~---~~~~~~~~l~~L~~~e~~~lf~~~~ 333 (849)
++|..-++....- ......++..+-+++.-.++++-+.
T Consensus 291 matnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 291 MATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred EeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 8887655433221 1112577888888887788877665
No 272
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=96.34 E-value=0.021 Score=67.57 Aligned_cols=119 Identities=16% Similarity=0.138 Sum_probs=68.6
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhc
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLG 240 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 240 (849)
+.++|.+..++++.+.+..-......|.|+|..|+||+++|+.+.+.... .-...+.|+++.-. .+.+..+++....
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r--~~~pfv~vnc~~~~-~~~~~~elfg~~~ 401 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESER--AAGPYIAVNCQLYP-DEALAEEFLGSDR 401 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCc--cCCCeEEEECCCCC-hHHHHHHhcCCCC
Confidence 45889998888888877654323345789999999999999999773211 11223445555432 2222233332211
Q ss_pred CCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCC
Q 003086 241 DASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKG 289 (849)
Q Consensus 241 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~ 289 (849)
........ ..+. ....=.|+||++..........+...+..+
T Consensus 402 ~~~~~~~~----g~~~---~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~ 443 (638)
T PRK11388 402 TDSENGRL----SKFE---LAHGGTLFLEKVEYLSPELQSALLQVLKTG 443 (638)
T ss_pred cCccCCCC----Ccee---ECCCCEEEEcChhhCCHHHHHHHHHHHhcC
Confidence 10000000 0000 112346999999987788888888877543
No 273
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.34 E-value=0.013 Score=59.91 Aligned_cols=87 Identities=18% Similarity=0.317 Sum_probs=53.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhcccCc-eEEEEeCCc-cCHHHHHHHHHHHhcCCC-------CCCCHH------
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFNDREIENWFER-RMWVSVSQT-FTEEQIMRSMLRNLGDAS-------AGDDRG------ 249 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s~~-~~~~~~~~~i~~~l~~~~-------~~~~~~------ 249 (849)
.-++|.|.+|+||||||+.+++ .++.+|.. ++++-+.+. ..+.++.+++...=.... ..+...
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 4679999999999999999998 45545544 556666544 345566666654311111 111111
Q ss_pred HHHHHHHHHh--c-CccEEEEEcCCCc
Q 003086 250 ELLRKINQYL--L-GKRYLIVMDDVWG 273 (849)
Q Consensus 250 ~~~~~l~~~l--~-~~~~LlVlDdv~~ 273 (849)
...-.+.+++ + ++.+|+++||+-.
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 1122344555 3 8999999999954
No 274
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.33 E-value=0.0025 Score=62.99 Aligned_cols=38 Identities=29% Similarity=0.234 Sum_probs=17.2
Q ss_pred CCCccceEeccCC--CCCcccCccccCCCCCcEEeecccc
Q 003086 583 SLQHLSYLCLSNT--HPLIHLPPSLKKLKNLQILDVSYCQ 620 (849)
Q Consensus 583 ~l~~Lr~L~L~~~--~~~~~lp~~i~~L~~L~~L~L~~~~ 620 (849)
.|++|++|.++.| +....++....++++|++|++++|.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence 4455555555555 2233333333344555555555443
No 275
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.31 E-value=0.019 Score=59.47 Aligned_cols=130 Identities=23% Similarity=0.341 Sum_probs=71.7
Q ss_pred cccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcC-hhhhcccCceE----EEEeCCcc-----CHH----H
Q 003086 165 GLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFND-REIENWFERRM----WVSVSQTF-----TEE----Q 230 (849)
Q Consensus 165 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~-~~~~~~f~~~~----wv~~s~~~-----~~~----~ 230 (849)
+|..+..--+++|..++ ...|.+.|.+|.|||.||-...-. ...+..|..++ -+.+.++. +-+ -
T Consensus 228 prn~eQ~~ALdlLld~d--I~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~P 305 (436)
T COG1875 228 PRNAEQRVALDLLLDDD--IDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGP 305 (436)
T ss_pred cccHHHHHHHHHhcCCC--CCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccc
Confidence 45566666677888775 889999999999999999665332 11233443322 12233221 111 1
Q ss_pred HHHHHHHHhc---CCCCCCCHHHHHHHH-H---------HHhcCc---cEEEEEcCCCccCHHHHHHHHhcCCCCCCceE
Q 003086 231 IMRSMLRNLG---DASAGDDRGELLRKI-N---------QYLLGK---RYLIVMDDVWGEDLAWWRRIYEGLPKGKGSSI 294 (849)
Q Consensus 231 ~~~~i~~~l~---~~~~~~~~~~~~~~l-~---------~~l~~~---~~LlVlDdv~~~~~~~~~~l~~~l~~~~~s~i 294 (849)
.+..|.+.+. ..... . +...+.+ . .+.+|+ +-++|+|.+.+-++.+...+..- .+.||||
T Consensus 306 Wmq~i~DnLE~L~~~~~~-~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTiltR--~G~GsKI 381 (436)
T COG1875 306 WMQAIFDNLEVLFSPNEP-G-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTILTR--AGEGSKI 381 (436)
T ss_pred hHHHHHhHHHHHhccccc-c-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHHHh--ccCCCEE
Confidence 2222322221 11111 1 2222222 1 123443 46999999999777665555432 2669999
Q ss_pred EEEecc
Q 003086 295 IITTRN 300 (849)
Q Consensus 295 lvTtr~ 300 (849)
+.|.-.
T Consensus 382 Vl~gd~ 387 (436)
T COG1875 382 VLTGDP 387 (436)
T ss_pred EEcCCH
Confidence 998864
No 276
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.31 E-value=0.03 Score=65.63 Aligned_cols=154 Identities=14% Similarity=0.117 Sum_probs=82.0
Q ss_pred ccccccccHHHHHHHHh---ccC-------CCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHH
Q 003086 162 LVVGLEGDTRKIKDWLF---EAE-------EGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQI 231 (849)
Q Consensus 162 ~~vGr~~~~~~l~~~L~---~~~-------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~ 231 (849)
++.|.+...+++.+.+. .+. .-.+-|.|+|++|.|||++|+.+... ....| +.++.+ ++
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~--~~~~f---~~is~~------~~ 221 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGS------DF 221 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCE---EEEehH------Hh
Confidence 56677766666655432 211 11344899999999999999999773 22222 222222 11
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccC----------HHHHH----HHHhcCC---CCCCceE
Q 003086 232 MRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGED----------LAWWR----RIYEGLP---KGKGSSI 294 (849)
Q Consensus 232 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------~~~~~----~l~~~l~---~~~~s~i 294 (849)
.. .. .+.....+...+.......+.+|++|+++... ...++ .+...+. ...+.-|
T Consensus 222 ~~----~~----~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~viv 293 (644)
T PRK10733 222 VE----MF----VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIV 293 (644)
T ss_pred HH----hh----hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeE
Confidence 11 01 01122333333444444577899999986510 11222 2222221 1224455
Q ss_pred EEEecchhhhhh-cc--ccccccccCCCCChhhHHHHHHHHhh
Q 003086 295 IITTRNGKVSQK-MG--VKKARMHFPKFLSEDDSWLLFRKIAF 334 (849)
Q Consensus 295 lvTtr~~~v~~~-~~--~~~~~~~~l~~L~~~e~~~lf~~~~~ 334 (849)
|.||...+.... .. ......+.+...+.++..+++..+..
T Consensus 294 IaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 294 IAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred EEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 667766543222 11 11125777888888888888888763
No 277
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=96.31 E-value=0.011 Score=59.27 Aligned_cols=77 Identities=21% Similarity=0.280 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHhh-hhccCchHHHHHHHHHHHHHHhhhhhhhhccc
Q 003086 5 VVQIFLERLLITLTEQTGYVNEFRDQFERLQSELQFMQSFLADADRL-KRKRNSQTLRTFMAELRELIYEAEDILADCHL 83 (849)
Q Consensus 5 ~v~~~~~kl~~~l~~~~~~~~~~~~~~~~L~~~L~~i~~~l~~a~~~-~~~~~~~~~~~wl~~lr~~~yd~ed~ld~~~~ 83 (849)
-|.+++.+|-.+.......+.-++.+++-+|.+++.+|.||+..... ..+- +....++.++-..||++|.++|-+..
T Consensus 297 yVdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh--~~~ed~a~~ii~kAyevEYVVDaCi~ 374 (402)
T PF12061_consen 297 YVDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKH--DTNEDCATQIIRKAYEVEYVVDACIS 374 (402)
T ss_pred HHHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhh--hhhhhHHHHHHHHHhheeeeeehhhc
Confidence 35677888888887777778899999999999999999999997443 3333 45889999999999999999998764
No 278
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.31 E-value=0.041 Score=50.63 Aligned_cols=109 Identities=16% Similarity=0.307 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHhhhhhhhhc
Q 003086 2 ADAVVQIFLERLLITLTEQTGYVNEFRDQFERLQSELQFMQSFLADADRLKRKRNSQTLRTFMAELRELIYEAEDILADC 81 (849)
Q Consensus 2 A~~~v~~~~~kl~~~l~~~~~~~~~~~~~~~~L~~~L~~i~~~l~~a~~~~~~~~~~~~~~wl~~lr~~~yd~ed~ld~~ 81 (849)
++||++.+++.|...+.+.......++.-.++|..+++.|..++++.+.....-. ..-+.-++++.+...+++++++.|
T Consensus 7 ~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld-~~~~ee~e~L~~~L~~g~~LV~k~ 85 (147)
T PF05659_consen 7 GGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELD-RPRQEEIERLKELLEKGKELVEKC 85 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcC-CchhHHHHHHHHHHHHHHHHHHHh
Confidence 4677788888888888888888889999999999999999999999987543221 222666889999999999999876
Q ss_pred ccccccccccccCcccccCCCChhhhhhHHHHHHHHHHHHHHHHH
Q 003086 82 HLQSRDEDQLSNGWLTFLYPPNISFRYQTGKRLREINDKITYIKQ 126 (849)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~l~~i~~ 126 (849)
.- . +| .++...++.+++|+++.+.+.....
T Consensus 86 sk---~------~r------~n~~kk~~y~~Ki~~le~~l~~f~~ 115 (147)
T PF05659_consen 86 SK---V------RR------WNLYKKPRYARKIEELEESLRRFIQ 115 (147)
T ss_pred cc---c------cH------HHHHhhHhHHHHHHHHHHHHHHHhc
Confidence 54 1 01 1233346678888777776654433
No 279
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.30 E-value=0.012 Score=58.11 Aligned_cols=112 Identities=15% Similarity=0.158 Sum_probs=59.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccE
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRY 264 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 264 (849)
..|.|+|+.|.||||+++.+... ........+++ +.++. +.........+.....+.+.....+.++..+...+=
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t-~e~~~--E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd 76 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILT-IEDPI--EFVHESKRSLINQREVGLDTLSFENALKAALRQDPD 76 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEE-EcCCc--cccccCccceeeecccCCCccCHHHHHHHHhcCCcC
Confidence 47899999999999999987663 22233333333 22211 110000000000000011223455567777766777
Q ss_pred EEEEcCCCccCHHHHHHHHhcCCCCCCceEEEEecchhhhh
Q 003086 265 LIVMDDVWGEDLAWWRRIYEGLPKGKGSSIIITTRNGKVSQ 305 (849)
Q Consensus 265 LlVlDdv~~~~~~~~~~l~~~l~~~~~s~ilvTtr~~~v~~ 305 (849)
++++|++.+ .+.+..+.... ..|-.++.|+...++..
T Consensus 77 ~ii~gEird--~e~~~~~l~~a--~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 77 VILVGEMRD--LETIRLALTAA--ETGHLVMSTLHTNSAAK 113 (198)
T ss_pred EEEEcCCCC--HHHHHHHHHHH--HcCCEEEEEecCCcHHH
Confidence 999999976 55554444332 22555777776554443
No 280
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.29 E-value=0.015 Score=69.28 Aligned_cols=133 Identities=14% Similarity=0.152 Sum_probs=77.5
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhc
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLG 240 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 240 (849)
..++|+...++.+.+.+..-......|.|+|..|+|||++|+.+.+.... .-...+.+++.... ...+-..+.....
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r--~~~~~v~i~c~~~~-~~~~~~~lfg~~~ 452 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGR--NNRRMVKMNCAAMP-AGLLESDLFGHER 452 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCC--CCCCeEEEecccCC-hhHhhhhhcCccc
Confidence 36899999999988777654333457889999999999999999874211 11234555665432 1222222211111
Q ss_pred CCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCCC------------CceEEEEecc
Q 003086 241 DASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK------------GSSIIITTRN 300 (849)
Q Consensus 241 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------~s~ilvTtr~ 300 (849)
+...+.. ......+. ....=.|+||++..........+...+..+. +.+||.||..
T Consensus 453 ~~~~g~~-~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 520 (686)
T PRK15429 453 GAFTGAS-AQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 520 (686)
T ss_pred ccccccc-cchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCC
Confidence 1111111 11111121 1223479999999877787888877765421 3478888864
No 281
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.28 E-value=0.061 Score=57.45 Aligned_cols=103 Identities=15% Similarity=0.186 Sum_probs=56.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCcc-CHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhc
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTF-TEEQIMRSMLRNLGDASA-GDDRGELLRKINQYLL 260 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~-~~~~~~~~~~l~~~l~ 260 (849)
..++|+|+|++|+||||++..++.. ....=..+..++..... ...+-+....+.++.+.. ..+...+.+.+...-.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~--L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH--HHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 3579999999999999999999763 22222234555543221 122233344444443322 3355566555544322
Q ss_pred C-ccEEEEEcCCCc--cCHHHHHHHHhcCC
Q 003086 261 G-KRYLIVMDDVWG--EDLAWWRRIYEGLP 287 (849)
Q Consensus 261 ~-~~~LlVlDdv~~--~~~~~~~~l~~~l~ 287 (849)
. +.=+|++|-.-. .+....+.+...+.
T Consensus 318 ~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk 347 (436)
T PRK11889 318 EARVDYILIDTAGKNYRASETVEEMIETMG 347 (436)
T ss_pred ccCCCEEEEeCccccCcCHHHHHHHHHHHh
Confidence 1 235788887754 22444555555543
No 282
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.26 E-value=0.0036 Score=69.53 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=39.1
Q ss_pred ccccccccHHHHHHHHhc----cCCCeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 162 LVVGLEGDTRKIKDWLFE----AEEGILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
+++|.++.+++|++.|.. -+...+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 589999999999999843 244568999999999999999999987
No 283
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.24 E-value=0.008 Score=58.14 Aligned_cols=36 Identities=25% Similarity=0.496 Sum_probs=28.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEE
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWV 220 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 220 (849)
...+|.|+|++|.||||+|+.++. +....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 346899999999999999999987 444455555555
No 284
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.22 E-value=0.037 Score=51.37 Aligned_cols=105 Identities=19% Similarity=0.196 Sum_probs=56.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCcc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKR 263 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 263 (849)
-.+++|+|..|.|||||++.+..-.. .....+|+.-.. .+..-..-..-....-.+...+..++
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~~~~~lS~G~~~rv~laral~~~p 89 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIGYFEQLSGGEKMRLALAKLLLENP 89 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEEEEccCCHHHHHHHHHHHHHhcCC
Confidence 35889999999999999999977421 112223321100 00000000111222223445556677
Q ss_pred EEEEEcCCCc-cCHHHHHHHHhcCCCCCCceEEEEecchhhhh
Q 003086 264 YLIVMDDVWG-EDLAWWRRIYEGLPKGKGSSIIITTRNGKVSQ 305 (849)
Q Consensus 264 ~LlVlDdv~~-~~~~~~~~l~~~l~~~~~s~ilvTtr~~~v~~ 305 (849)
-++++|+--. -|....+.+...+..- +..||++|...+...
T Consensus 90 ~illlDEP~~~LD~~~~~~l~~~l~~~-~~til~~th~~~~~~ 131 (144)
T cd03221 90 NLLLLDEPTNHLDLESIEALEEALKEY-PGTVILVSHDRYFLD 131 (144)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHc-CCEEEEEECCHHHHH
Confidence 7999998754 3455555555544322 356888887755443
No 285
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.21 E-value=0.0047 Score=59.03 Aligned_cols=90 Identities=14% Similarity=0.175 Sum_probs=52.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhh-cccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIE-NWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGK 262 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 262 (849)
..++.+.|+.|+|||.||+.+.. ... +.....+-+..+.-....+.-..+-..++.+ .. . +. ...
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~-~~-~-------v~---~~~ 68 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSP-PG-Y-------VG---AEE 68 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHT-TC-H-------HH---HHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcccccchHHhhhhhhhhcc-cc-e-------ee---ccc
Confidence 46789999999999999999977 233 3334555566554433111111111111100 00 0 00 011
Q ss_pred cEEEEEcCCCccCH-----------HHHHHHHhcCC
Q 003086 263 RYLIVMDDVWGEDL-----------AWWRRIYEGLP 287 (849)
Q Consensus 263 ~~LlVlDdv~~~~~-----------~~~~~l~~~l~ 287 (849)
.-+|+||+++.... ..|..+...+.
T Consensus 69 ~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le 104 (171)
T PF07724_consen 69 GGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLE 104 (171)
T ss_dssp HTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHhhccccccccchhhHHHHHHHHHHHhc
Confidence 12999999998878 88888887664
No 286
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.21 E-value=0.0025 Score=62.92 Aligned_cols=110 Identities=20% Similarity=0.144 Sum_probs=63.0
Q ss_pred CCCccceEeccCCCCCcccCccccCCCCCcEEeeccc--cCCccCChhhhcccCCcEeeccCCCCcc-ccCccccccccc
Q 003086 583 SLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYC--QNLKMLPSYVQSFIQLRALDVTHCGSLQ-YLPKGFGKLLNL 659 (849)
Q Consensus 583 ~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~--~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~p~~i~~l~~L 659 (849)
.+..|.+|++.++ .+..+- .+-.|++|+.|.++.| .....++--..++++|++|++++|++.. +.-..+..+.+|
T Consensus 41 ~~~~le~ls~~n~-gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINV-GLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhcc-ceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 3455555555555 333332 2456778888888866 3444555555566888888888887641 111224556667
Q ss_pred cccCcccccCCCCCCCCCchhhhccccccceeeeec
Q 003086 660 EVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLT 695 (849)
Q Consensus 660 ~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 695 (849)
..|.++.+...+ .....-..+.-+++|+.|+-...
T Consensus 119 ~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 119 KSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhcccCCccc-cccHHHHHHHHhhhhcccccccc
Confidence 777776664333 12212223556677777765444
No 287
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.20 E-value=0.026 Score=60.12 Aligned_cols=70 Identities=14% Similarity=0.150 Sum_probs=47.0
Q ss_pred HHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhc----ccCceEEEEeCCccCHHHHHHHHHHHhcCC
Q 003086 172 KIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIEN----WFERRMWVSVSQTFTEEQIMRSMLRNLGDA 242 (849)
Q Consensus 172 ~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 242 (849)
.+-++|..+=....++-|+|.+|+|||+||..++-...... .-..++|++....|+++.+ .+|++.++..
T Consensus 111 ~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~ 184 (342)
T PLN03186 111 ELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLN 184 (342)
T ss_pred HHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCC
Confidence 33344444333467889999999999999988764322111 1136899999999988776 4666666543
No 288
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.19 E-value=0.054 Score=52.29 Aligned_cols=122 Identities=16% Similarity=0.153 Sum_probs=74.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEE-------------------------------eCC--------
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVS-------------------------------VSQ-------- 224 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-------------------------------~s~-------- 224 (849)
-.|++|+|+.|.|||||.+.+..=+.. =...+||. +-+
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE~~---~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~ 104 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLEEP---DSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK 104 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCcCC---CCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH
Confidence 358999999999999999998542111 11122221 111
Q ss_pred -----ccCHHHHHHHHHHHhcCCCC----C---CCHHHHHHHHHHHhcCccEEEEEcCCCc-cCHHHHHHHHhcCCC--C
Q 003086 225 -----TFTEEQIMRSMLRNLGDASA----G---DDRGELLRKINQYLLGKRYLIVMDDVWG-EDLAWWRRIYEGLPK--G 289 (849)
Q Consensus 225 -----~~~~~~~~~~i~~~l~~~~~----~---~~~~~~~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~--~ 289 (849)
....++...++++.++.... + +.-.+..-.|.+.|.-++-++.+|..-+ -|++...++...+.. .
T Consensus 105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~ 184 (240)
T COG1126 105 VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE 184 (240)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH
Confidence 11234555566666665432 1 1233444556777877888999999866 367776676666554 2
Q ss_pred CCceEEEEecchhhhhhcc
Q 003086 290 KGSSIIITTRNGKVSQKMG 308 (849)
Q Consensus 290 ~~s~ilvTtr~~~v~~~~~ 308 (849)
.|-..|+.|.....|..+.
T Consensus 185 eGmTMivVTHEM~FAr~Va 203 (240)
T COG1126 185 EGMTMIIVTHEMGFAREVA 203 (240)
T ss_pred cCCeEEEEechhHHHHHhh
Confidence 3777777777766655543
No 289
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.18 E-value=0.015 Score=55.44 Aligned_cols=113 Identities=14% Similarity=0.149 Sum_probs=60.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCC--ccCHHHHHHHHHHHhcCCCCCCCHH-HHHHHHHHHhcC
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQ--TFTEEQIMRSMLRNLGDASAGDDRG-ELLRKINQYLLG 261 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~--~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~~l~~~l~~ 261 (849)
.+++|+|..|.|||||.+.++.-. ......+++.-.. ..+..+..+ ..++.... -+.. ...-.+...+-.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~q-LS~G~~qrl~laral~~ 99 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAMVYQ-LSVGERQMVEIARALAR 99 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEEEEe-cCHHHHHHHHHHHHHhc
Confidence 589999999999999999997631 2233344432111 111111111 11111000 1222 223334455666
Q ss_pred ccEEEEEcCCCc-cCHHHHHHHHhcCCC--CCCceEEEEecchhhh
Q 003086 262 KRYLIVMDDVWG-EDLAWWRRIYEGLPK--GKGSSIIITTRNGKVS 304 (849)
Q Consensus 262 ~~~LlVlDdv~~-~~~~~~~~l~~~l~~--~~~s~ilvTtr~~~v~ 304 (849)
++-++++|+--. -|....+.+...+.. ..+..||++|.+....
T Consensus 100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 778899999754 345555555555432 2367788888876543
No 290
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.024 Score=55.32 Aligned_cols=47 Identities=23% Similarity=0.257 Sum_probs=36.7
Q ss_pred CccccccccHHHHHHHHhcc-----------CCCeEEEEEEcCCCCcHHHHHHHHhcC
Q 003086 161 TLVVGLEGDTRKIKDWLFEA-----------EEGILAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
.++-|.+-.+++|.+...-+ -+.++-|.++|++|.|||.||+.|.++
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 45778888888887765322 135677889999999999999999995
No 291
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.18 E-value=0.037 Score=56.29 Aligned_cols=93 Identities=15% Similarity=0.166 Sum_probs=57.7
Q ss_pred HHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCC----------
Q 003086 175 DWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASA---------- 244 (849)
Q Consensus 175 ~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---------- 244 (849)
+.|..+=....++.|+|.+|+|||++|..+.... .+ +=..++|++..+. +.++.+.+ .+++....
T Consensus 16 ~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~-~~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i 90 (234)
T PRK06067 16 RKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGA-LK-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRI 90 (234)
T ss_pred HhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHH-Hh-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceE
Confidence 3333332346789999999999999999986531 22 3346889888654 45555543 23332110
Q ss_pred -----------CCCHHHHHHHHHHHhcC-ccEEEEEcCCC
Q 003086 245 -----------GDDRGELLRKINQYLLG-KRYLIVMDDVW 272 (849)
Q Consensus 245 -----------~~~~~~~~~~l~~~l~~-~~~LlVlDdv~ 272 (849)
....+.+...+.+.+.. +.-++|+|.+-
T Consensus 91 ~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 91 FPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred EeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 12335666666666653 55689999975
No 292
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.18 E-value=0.015 Score=62.91 Aligned_cols=22 Identities=36% Similarity=0.682 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+++|+|+.|.||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 4899999999999999999844
No 293
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.088 Score=60.77 Aligned_cols=180 Identities=12% Similarity=0.090 Sum_probs=100.7
Q ss_pred CCccccccccHHHH---HHHHhccC-------CCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHH
Q 003086 160 HTLVVGLEGDTRKI---KDWLFEAE-------EGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEE 229 (849)
Q Consensus 160 ~~~~vGr~~~~~~l---~~~L~~~~-------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 229 (849)
-.++.|-|+.+++| +++|..++ .-++=|.++|++|.|||-||+.++-... +-|++++..
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGS---- 378 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGS---- 378 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------CceeeechH----
Confidence 34678877655554 55666552 1356688999999999999999988532 446666633
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCcc---------------CHHHHHHHHhcCCCCC---C
Q 003086 230 QIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGE---------------DLAWWRRIYEGLPKGK---G 291 (849)
Q Consensus 230 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---------------~~~~~~~l~~~l~~~~---~ 291 (849)
+.++.+.+. ......+.+...=...++++.+|+++.. ....+.++..-+..-. +
T Consensus 379 ----EFvE~~~g~----~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 379 ----EFVEMFVGV----GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred ----HHHHHhccc----chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 222222211 1111122222222456789999987431 1122333333222111 2
Q ss_pred ceEEEEecchhhhhhc--cc-cccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhH
Q 003086 292 SSIIITTRNGKVSQKM--GV-KKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLA 363 (849)
Q Consensus 292 s~ilvTtr~~~v~~~~--~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLa 363 (849)
--++-+|...++.... .. .-...+.+..-+.....++|..++-... ...+..++.+ |+...-|.+=|
T Consensus 451 vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~----~~~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 451 VIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKK----LDDEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred EEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccC----CCcchhhHHH-HHhcCCCCcHH
Confidence 2234445444432211 11 1115777888888899999999884332 1234556666 88888888865
No 294
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.16 E-value=0.039 Score=56.17 Aligned_cols=58 Identities=19% Similarity=0.253 Sum_probs=38.9
Q ss_pred HHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHH
Q 003086 174 KDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSM 235 (849)
Q Consensus 174 ~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 235 (849)
-++|..+=....++.|.|.+|+|||++|..+.... . ..-..++||+... ++.++.+.+
T Consensus 11 D~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 11 DEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred HHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeC--CHHHHHHHH
Confidence 33444443356799999999999999998876531 2 2345688888765 455665554
No 295
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.16 E-value=0.0067 Score=57.46 Aligned_cols=91 Identities=24% Similarity=0.210 Sum_probs=57.2
Q ss_pred chhhhccccccceeeeeccCcccchHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCC--Cc
Q 003086 678 ISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSP--VW 755 (849)
Q Consensus 678 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p--~~ 755 (849)
...|..++.|..|.+.+|.+..+.+.--..+++|..|.|.+|.+.. +.++..+..||.|++|.+-++....-. ..
T Consensus 57 l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~---l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~ 133 (233)
T KOG1644|consen 57 LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE---LGDLDPLASCPKLEYLTLLGNPVEHKKNYRL 133 (233)
T ss_pred cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhh---hhhcchhccCCccceeeecCCchhcccCcee
Confidence 3356677778888888888777766555556788888888775443 345566666777777777654322111 01
Q ss_pred CCCCCCCCCceEEEee
Q 003086 756 LNPASLPMLRYLSVCS 771 (849)
Q Consensus 756 ~~~~~l~~L~~L~L~~ 771 (849)
+-...+|+|+.|++..
T Consensus 134 yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 134 YVLYKLPSLRTLDFQK 149 (233)
T ss_pred EEEEecCcceEeehhh
Confidence 1114577777777765
No 296
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.15 E-value=0.033 Score=53.51 Aligned_cols=112 Identities=19% Similarity=0.253 Sum_probs=61.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCh---hhhc---ccC--ceEEEEeCCccCHHHHHHHHHHHhcCCCC-------CCCH
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDR---EIEN---WFE--RRMWVSVSQTFTEEQIMRSMLRNLGDASA-------GDDR 248 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~---~~~~---~f~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-------~~~~ 248 (849)
-.+++|+|+.|.|||||.+.+..+. .+.. .|. .+.|+ .+ .+.+..++.... .-+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 3589999999999999999986321 1111 111 12332 22 345566654321 1122
Q ss_pred HH-HHHHHHHHhcCc--cEEEEEcCCCc-cCHHHHHHHHhcCCC--CCCceEEEEecchhhhh
Q 003086 249 GE-LLRKINQYLLGK--RYLIVMDDVWG-EDLAWWRRIYEGLPK--GKGSSIIITTRNGKVSQ 305 (849)
Q Consensus 249 ~~-~~~~l~~~l~~~--~~LlVlDdv~~-~~~~~~~~l~~~l~~--~~~s~ilvTtr~~~v~~ 305 (849)
.+ ..-.+...+..+ +-++++|+--. -+....+.+...+.. ..|..||++|.+.+...
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 22 222344445555 67888898744 334444445444432 23777888888876554
No 297
>PHA02244 ATPase-like protein
Probab=96.13 E-value=0.024 Score=60.09 Aligned_cols=118 Identities=12% Similarity=0.106 Sum_probs=60.4
Q ss_pred ccccccccHH----HHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHH
Q 003086 162 LVVGLEGDTR----KIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLR 237 (849)
Q Consensus 162 ~~vGr~~~~~----~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 237 (849)
.++|...... .+..++..+ ..|.|+|++|+|||+||+.+... ... -|+.++...+... +..
T Consensus 97 ~~ig~sp~~~~~~~ri~r~l~~~----~PVLL~GppGtGKTtLA~aLA~~--lg~-----pfv~In~l~d~~~----L~G 161 (383)
T PHA02244 97 TKIASNPTFHYETADIAKIVNAN----IPVFLKGGAGSGKNHIAEQIAEA--LDL-----DFYFMNAIMDEFE----LKG 161 (383)
T ss_pred cccCCCHHHHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHH--hCC-----CEEEEecChHHHh----hcc
Confidence 3555444433 444444443 24778999999999999999873 221 2333432111000 000
Q ss_pred HhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCC------------CCCceEEEEecc
Q 003086 238 NLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPK------------GKGSSIIITTRN 300 (849)
Q Consensus 238 ~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~------------~~~s~ilvTtr~ 300 (849)
... .........+...+ .+--+++||++.....+....+...+.. ..+.++|+|+..
T Consensus 162 ~i~-~~g~~~dgpLl~A~-----~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~ 230 (383)
T PHA02244 162 FID-ANGKFHETPFYEAF-----KKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNT 230 (383)
T ss_pred ccc-ccccccchHHHHHh-----hcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCC
Confidence 000 00000111222221 2345999999987656655555555421 126678888874
No 298
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.12 E-value=0.038 Score=53.51 Aligned_cols=113 Identities=18% Similarity=0.112 Sum_probs=57.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEe-----------------CCccCHHHHHHHHHHHhcCCCCCCC
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSV-----------------SQTFTEEQIMRSMLRNLGDASAGDD 247 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~-----------------s~~~~~~~~~~~i~~~l~~~~~~~~ 247 (849)
.+++|+|..|.|||||++.+..-.. .-...+++.- .+.+.... ..+.+.+ ...-+
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~--~tv~~~i---~~~LS 100 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD--TTLRNNL---GRRFS 100 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec--ccHHHhh---cccCC
Confidence 5799999999999999999976311 1111222210 11100000 0111111 00111
Q ss_pred HH-HHHHHHHHHhcCccEEEEEcCCCc-cCHHHHHHHHhcCCCC-CCceEEEEecchhhhh
Q 003086 248 RG-ELLRKINQYLLGKRYLIVMDDVWG-EDLAWWRRIYEGLPKG-KGSSIIITTRNGKVSQ 305 (849)
Q Consensus 248 ~~-~~~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~s~ilvTtr~~~v~~ 305 (849)
.. ...-.+...+-.++-++++|+... -|....+.+...+..- .+..||++|.+.....
T Consensus 101 ~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 101 GGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 12 222334455666778999999754 2344444444433321 2677888888766554
No 299
>PRK06696 uridine kinase; Validated
Probab=96.12 E-value=0.006 Score=61.51 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=33.5
Q ss_pred ccccHHHHHHHHhc-cCCCeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 166 LEGDTRKIKDWLFE-AEEGILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 166 r~~~~~~l~~~L~~-~~~~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
|.+-+++|.+.+.. ......+|+|.|.+|.||||||+.+..
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 55667778777765 334678999999999999999999987
No 300
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.12 E-value=0.0086 Score=64.38 Aligned_cols=109 Identities=14% Similarity=0.124 Sum_probs=70.9
Q ss_pred ccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcC
Q 003086 162 LVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGD 241 (849)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 241 (849)
.++|.++.+..+...+..+ +.+.+.|.+|+|||+||+.+... .. ...++|.+.....+.+++....-....
T Consensus 25 ~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~~--l~---~~~~~i~~t~~l~p~d~~G~~~~~~~~ 95 (329)
T COG0714 25 VVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALARA--LG---LPFVRIQCTPDLLPSDLLGTYAYAALL 95 (329)
T ss_pred eeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHHH--hC---CCeEEEecCCCCCHHHhcCchhHhhhh
Confidence 4788888888877776664 36789999999999999999872 22 235677787777777766544332211
Q ss_pred CCCCCCHHHHHHHHHHHh-----cCccEEEEEcCCCccCHHHHHHHHhcCCC
Q 003086 242 ASAGDDRGELLRKINQYL-----LGKRYLIVMDDVWGEDLAWWRRIYEGLPK 288 (849)
Q Consensus 242 ~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~ 288 (849)
.. .....+. ..-+.++++|.++...+.....+...+..
T Consensus 96 ~~---------~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e 138 (329)
T COG0714 96 LE---------PGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEE 138 (329)
T ss_pred cc---------CCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhC
Confidence 00 0000000 11115999999999777777777766654
No 301
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.10 E-value=0.025 Score=60.33 Aligned_cols=68 Identities=22% Similarity=0.271 Sum_probs=44.9
Q ss_pred HHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcc----cCceEEEEeCCccCHHHHHHHHHHHhc
Q 003086 172 KIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENW----FERRMWVSVSQTFTEEQIMRSMLRNLG 240 (849)
Q Consensus 172 ~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~s~~~~~~~~~~~i~~~l~ 240 (849)
.+-++|..+=....++-|+|++|+|||++|..++........ =..++||+....++++.+. ++++.++
T Consensus 90 ~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g 161 (317)
T PRK04301 90 ELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALG 161 (317)
T ss_pred HHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcC
Confidence 333444333234678999999999999999988753221111 1468999999888877665 4445544
No 302
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.09 E-value=0.00037 Score=72.76 Aligned_cols=263 Identities=18% Similarity=0.093 Sum_probs=142.7
Q ss_pred hhccCccchhcccccccccchhh-hhhhhhcCCCcceEEecCCcc-cccccccccc-ccCCCCccceEeccCCCCCcc--
Q 003086 526 ISNLKLRALMSTTKTAEVNNIAS-NLATKFSECRYLRVLDISRSI-FELPLKGLLS-QTGSLQHLSYLCLSNTHPLIH-- 600 (849)
Q Consensus 526 ~~~~~lrsl~~~~~~~~~~~~~~-~~~~~~~~l~~Lr~L~L~~~~-~~~~~~~~p~-~~~~l~~Lr~L~L~~~~~~~~-- 600 (849)
..|+++..|-+.+.. .++. .....-..++.|+.|+|..|. ++. .... -...+++|.||+++.|..+..
T Consensus 161 ~~CpnIehL~l~gc~----~iTd~s~~sla~~C~~l~~l~L~~c~~iT~---~~Lk~la~gC~kL~~lNlSwc~qi~~~g 233 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCK----KITDSSLLSLARYCRKLRHLNLHSCSSITD---VSLKYLAEGCRKLKYLNLSWCPQISGNG 233 (483)
T ss_pred hhCCchhhhhhhcce----eccHHHHHHHHHhcchhhhhhhcccchhHH---HHHHHHHHhhhhHHHhhhccCchhhcCc
Confidence 456677666554432 1111 122223678999999999864 441 2222 234689999999999976654
Q ss_pred cCccccCCCCCcEEeeccccCCc--cCChhhhcccCCcEeeccCCCCccccC-ccc-cccccccccCcccccCCCCCCCC
Q 003086 601 LPPSLKKLKNLQILDVSYCQNLK--MLPSYVQSFIQLRALDVTHCGSLQYLP-KGF-GKLLNLEVLLGFRPARSSQPEGC 676 (849)
Q Consensus 601 lp~~i~~L~~L~~L~L~~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~i-~~l~~L~~L~~~~~~~~~~~~~~ 676 (849)
+-.-..++.+|+.+.+++|.... .+-..-+.+..+..+++..|....... ..+ ..+..||.|...++.. ....
T Consensus 234 v~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~---~~d~ 310 (483)
T KOG4341|consen 234 VQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTD---ITDE 310 (483)
T ss_pred chHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCC---CchH
Confidence 11223566678888777765322 111111234456666666664321110 011 2456788887665532 2233
Q ss_pred Cchhhh-ccccccceeeeecc-CcccchHhh-cCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCC
Q 003086 677 RISELK-NLTRLRKLGLQLTC-GDEIEEDAL-VNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSP 753 (849)
Q Consensus 677 ~~~~l~-~l~~L~~L~l~~~~-~~~~~~~~l-~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p 753 (849)
.+..|+ +..+|+.|.+..++ ++......+ .++++|+.+++..+.+..... ....-.+++.|+.|+++.+...+.-
T Consensus 311 ~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~t--L~sls~~C~~lr~lslshce~itD~ 388 (483)
T KOG4341|consen 311 VLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGT--LASLSRNCPRLRVLSLSHCELITDE 388 (483)
T ss_pred HHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhh--HhhhccCCchhccCChhhhhhhhhh
Confidence 333443 67899999998884 222222233 356889999988664433221 1222345888999998865432211
Q ss_pred --CcC--CCCCCCCCceEEEeeCCccc-cccccccCcccccccceeecccccccc
Q 003086 754 --VWL--NPASLPMLRYLSVCSGNLSK-MHDSFWGENNTVWKIEALLFESLSDLG 803 (849)
Q Consensus 754 --~~~--~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~fp~~L~~L~l~~l~~L~ 803 (849)
..+ ....+..|..|.|+++.... ...++.. ..+ .|+.+.+-.+....
T Consensus 389 gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~--~c~-~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 389 GIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS--ICR-NLERIELIDCQDVT 440 (483)
T ss_pred hhhhhhhccccccccceeeecCCCCchHHHHHHHh--hCc-ccceeeeechhhhh
Confidence 011 11556788889998865432 1111111 234 66665555554433
No 303
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.08 E-value=0.052 Score=51.85 Aligned_cols=117 Identities=13% Similarity=0.095 Sum_probs=59.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhh-hc--ccC---ceEEEEeCCcc--CHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREI-EN--WFE---RRMWVSVSQTF--TEEQIMRSMLRNLGDASAGDDRGELLRKI 255 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~--~f~---~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~l 255 (849)
-.+++|+|..|.|||||++.+..-... .+ .++ .+.++ .+.. ....+...+.-. ....-..-....-.+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~--~~~~LS~G~~~rv~l 102 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP--WDDVLSGGEQQRLAF 102 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc--CCCCCCHHHHHHHHH
Confidence 358999999999999999999774211 11 111 12222 2221 111222222110 111111222233334
Q ss_pred HHHhcCccEEEEEcCCCc-cCHHHHHHHHhcCCCCCCceEEEEecchhhhh
Q 003086 256 NQYLLGKRYLIVMDDVWG-EDLAWWRRIYEGLPKGKGSSIIITTRNGKVSQ 305 (849)
Q Consensus 256 ~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~s~ilvTtr~~~v~~ 305 (849)
...+..++-++++|+--. -|......+...+... +..||++|.+.....
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-~~tiiivsh~~~~~~ 152 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL-GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh-CCEEEEEeCChhHHh
Confidence 555666777889998644 2344444444444322 467888887765543
No 304
>PRK07667 uridine kinase; Provisional
Probab=96.04 E-value=0.0085 Score=58.84 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=31.2
Q ss_pred HHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 170 TRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 170 ~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+.|.+.+........+|+|.|.+|.||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4667777776666678999999999999999999977
No 305
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.03 E-value=0.025 Score=59.10 Aligned_cols=86 Identities=21% Similarity=0.250 Sum_probs=47.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCcc-CHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhcC
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTF-TEEQIMRSMLRNLGDASA-GDDRGELLRKINQYLLG 261 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~-~~~~~~~~~~l~~~l~~ 261 (849)
.++++|+|++|+||||++..+......+..-..+..|+..... ...+.+....+.++.+.. ..+..++...+... .+
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~-~~ 272 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL-RD 272 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-cC
Confidence 5799999999999999999987632222111245566654321 122333334444444332 23444555444443 33
Q ss_pred ccEEEEEcCC
Q 003086 262 KRYLIVMDDV 271 (849)
Q Consensus 262 ~~~LlVlDdv 271 (849)
.=+|++|..
T Consensus 273 -~d~vliDt~ 281 (282)
T TIGR03499 273 -KDLILIDTA 281 (282)
T ss_pred -CCEEEEeCC
Confidence 347777753
No 306
>PRK00625 shikimate kinase; Provisional
Probab=96.02 E-value=0.05 Score=52.06 Aligned_cols=21 Identities=24% Similarity=0.407 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003086 186 AIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.|.|+||+|+||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 307
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.02 Score=61.90 Aligned_cols=48 Identities=25% Similarity=0.338 Sum_probs=36.9
Q ss_pred Cccccccc---cHHHHHHHHhccC-------CCeEEEEEEcCCCCcHHHHHHHHhcCh
Q 003086 161 TLVVGLEG---DTRKIKDWLFEAE-------EGILAIGVVGMGGLGKTTIAQKVFNDR 208 (849)
Q Consensus 161 ~~~vGr~~---~~~~l~~~L~~~~-------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 208 (849)
.++-|-|+ |+++|+++|.++. .=++-|.++|++|.|||-||+.++-..
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 45677775 5677788887763 124668899999999999999998853
No 308
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.01 E-value=0.096 Score=49.98 Aligned_cols=79 Identities=14% Similarity=0.199 Sum_probs=44.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCC----CCCHHHHHHHHHHHhcC
Q 003086 186 AIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASA----GDDRGELLRKINQYLLG 261 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~l~~~l~~ 261 (849)
++.|.|.+|.||||+|..+... .. ..++++.....++ .+..++|......... -.....+.+.+..+..+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~--~~---~~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ--SG---LQVLYIATAQPFD-DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH--cC---CCcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 5899999999999999998753 11 1244555444433 3455565444332211 11222344444443333
Q ss_pred ccEEEEEcCC
Q 003086 262 KRYLIVMDDV 271 (849)
Q Consensus 262 ~~~LlVlDdv 271 (849)
.-++++|.+
T Consensus 77 -~~~VlID~L 85 (170)
T PRK05800 77 -GRCVLVDCL 85 (170)
T ss_pred -CCEEEehhH
Confidence 337899987
No 309
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.99 E-value=0.014 Score=58.25 Aligned_cols=119 Identities=13% Similarity=0.100 Sum_probs=59.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCC----CCCHHHHHHHHHHHh
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASA----GDDRGELLRKINQYL 259 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~l~~~l 259 (849)
.+++.|+|+.|.||||+.+.+...... .+-...+|. .. .. -....++...+..... ..+...-.+++...+
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a--~~-~~-~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l 103 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPA--DS-AT-IGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKAL 103 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEc--CC-cE-EeeeeeeeeeeCCccChhhccchHHHHHHHHHHHH
Confidence 478999999999999999998642111 111112221 10 00 0011122222222211 112222222333222
Q ss_pred --cCccEEEEEcCCCcc-CHHH-----HHHHHhcCCCCC-CceEEEEecchhhhhhc
Q 003086 260 --LGKRYLIVMDDVWGE-DLAW-----WRRIYEGLPKGK-GSSIIITTRNGKVSQKM 307 (849)
Q Consensus 260 --~~~~~LlVlDdv~~~-~~~~-----~~~l~~~l~~~~-~s~ilvTtr~~~v~~~~ 307 (849)
..++.|++||+.-.. +..+ +..+......+. +..+|+||...+++...
T Consensus 104 ~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 104 RLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 467899999998652 2222 222322222223 45899999988776654
No 310
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.97 E-value=0.043 Score=58.41 Aligned_cols=96 Identities=15% Similarity=0.136 Sum_probs=58.3
Q ss_pred HHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhh----hcccCceEEEEeCCccCHHHHHHHHHHHhcCCCC-------
Q 003086 176 WLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREI----ENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASA------- 244 (849)
Q Consensus 176 ~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------- 244 (849)
+|..+=..-.++-|+|.+|+|||+|+..++-.... ...-..++||+....|+++.+.+ +++.++....
T Consensus 118 lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~ 196 (344)
T PLN03187 118 LLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNII 196 (344)
T ss_pred hcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEE
Confidence 34333234578889999999999999888543222 11224689999999999887654 5666654321
Q ss_pred ---CCCHHHHHHH---HHHHh-cCccEEEEEcCCC
Q 003086 245 ---GDDRGELLRK---INQYL-LGKRYLIVMDDVW 272 (849)
Q Consensus 245 ---~~~~~~~~~~---l~~~l-~~~~~LlVlDdv~ 272 (849)
..+.+++... +...+ ..+--|||+|.+-
T Consensus 197 ~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 197 YARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred EecCCCHHHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 1233333322 22223 2334578888873
No 311
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.97 E-value=0.04 Score=58.36 Aligned_cols=69 Identities=14% Similarity=0.150 Sum_probs=45.4
Q ss_pred HHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhc----ccCceEEEEeCCccCHHHHHHHHHHHhcC
Q 003086 172 KIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIEN----WFERRMWVSVSQTFTEEQIMRSMLRNLGD 241 (849)
Q Consensus 172 ~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 241 (849)
.+-++|..+=....++.|+|.+|+|||+|+..++....... .-..++|++....++... +.++++.++.
T Consensus 84 ~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~ 156 (316)
T TIGR02239 84 ELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGL 156 (316)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCC
Confidence 34444544434567999999999999999998865322211 113579999988888776 4445555543
No 312
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.96 E-value=0.007 Score=55.16 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
--|+|.|++|+||||+++++.+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHH
Confidence 46899999999999999999873
No 313
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.94 E-value=0.044 Score=57.89 Aligned_cols=99 Identities=13% Similarity=0.173 Sum_probs=59.3
Q ss_pred HHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhh----cccCceEEEEeCCccCHHHHHHHHHHHhcCCCC----
Q 003086 173 IKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIE----NWFERRMWVSVSQTFTEEQIMRSMLRNLGDASA---- 244 (849)
Q Consensus 173 l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---- 244 (849)
+-++|..+=..-.++-|+|++|+|||+|+..++-..... ..=..++||+....|+++.+. ++++.++....
T Consensus 85 LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~ 163 (313)
T TIGR02238 85 LDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLD 163 (313)
T ss_pred HHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcC
Confidence 333444332345788999999999999998876422221 112468999999999888775 45666654321
Q ss_pred ------CCCHHHHH---HHHHHHh-cCccEEEEEcCCC
Q 003086 245 ------GDDRGELL---RKINQYL-LGKRYLIVMDDVW 272 (849)
Q Consensus 245 ------~~~~~~~~---~~l~~~l-~~~~~LlVlDdv~ 272 (849)
..+.++.. ..+...+ .++--|||+|.+-
T Consensus 164 ~i~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 164 NILYARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred cEEEecCCCHHHHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 11333333 2233233 2344578888874
No 314
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.93 E-value=0.078 Score=55.33 Aligned_cols=53 Identities=23% Similarity=0.124 Sum_probs=37.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHh
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNL 239 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 239 (849)
-.++.|.|.+|+||||++..+.... ...+=..++|+++.. +..++...+...+
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~-~~~~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDL-ITQHGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH-HHhcCceEEEEEccc--CHHHHHHHHHHHH
Confidence 3588899999999999999887642 122234578888765 4566676666554
No 315
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.93 E-value=0.075 Score=57.56 Aligned_cols=23 Identities=35% Similarity=0.277 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..++.|+|++|+||||+|.++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 316
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.89 E-value=0.063 Score=51.69 Aligned_cols=99 Identities=19% Similarity=0.178 Sum_probs=49.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCc-cCHHHHHHHHHHHhcCCC----CCCCHHHHH-HHHHHHh
Q 003086 186 AIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQT-FTEEQIMRSMLRNLGDAS----AGDDRGELL-RKINQYL 259 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~----~~~~~~~~~-~~l~~~l 259 (849)
++.++|++|+||||+++.+... ....-..++.++.... ....+.+...+...+.+. ...+..++. +.+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~--~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY--LKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999998763 3222123444443321 122333434444443221 122333333 3333334
Q ss_pred cCccEEEEEcCCCcc--CHHHHHHHHhcC
Q 003086 260 LGKRYLIVMDDVWGE--DLAWWRRIYEGL 286 (849)
Q Consensus 260 ~~~~~LlVlDdv~~~--~~~~~~~l~~~l 286 (849)
.+..-++|+|..-.. +......+....
T Consensus 80 ~~~~d~viiDt~g~~~~~~~~l~~l~~l~ 108 (173)
T cd03115 80 EENFDVVIVDTAGRLQIDENLMEELKKIK 108 (173)
T ss_pred hCCCCEEEEECcccchhhHHHHHHHHHHH
Confidence 444446668876542 223444454433
No 317
>PRK06762 hypothetical protein; Provisional
Probab=95.88 E-value=0.025 Score=54.11 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..+|.|+|++|+||||+|+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999876
No 318
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.88 E-value=0.094 Score=57.89 Aligned_cols=88 Identities=18% Similarity=0.131 Sum_probs=49.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCc-cCHHHHHHHHHHHhcCCCC----CCCHHHHHHHHHH
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQT-FTEEQIMRSMLRNLGDASA----GDDRGELLRKINQ 257 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~l~~ 257 (849)
.+.+|.++|.+|+||||+|..++.. ....-..+.-|++... ....+.+..+...++.+.. ..+.........+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~--L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARY--FKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 4689999999999999999999863 3322223444544321 1234455666666655422 1222232322223
Q ss_pred HhcCccEEEEEcCCCc
Q 003086 258 YLLGKRYLIVMDDVWG 273 (849)
Q Consensus 258 ~l~~~~~LlVlDdv~~ 273 (849)
.+.+. -+||+|..-.
T Consensus 172 ~~~~~-DvVIIDTAGr 186 (437)
T PRK00771 172 KFKKA-DVIIVDTAGR 186 (437)
T ss_pred HhhcC-CEEEEECCCc
Confidence 33333 5688887743
No 319
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.87 E-value=0.063 Score=52.25 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003086 186 AIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~ 206 (849)
+|.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999876
No 320
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.83 E-value=0.097 Score=51.75 Aligned_cols=125 Identities=19% Similarity=0.213 Sum_probs=70.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChh-------------------hhccc--CceEEEEe----CCccC------------
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFNDRE-------------------IENWF--ERRMWVSV----SQTFT------------ 227 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~~~-------------------~~~~f--~~~~wv~~----s~~~~------------ 227 (849)
-.|+|+|+.|.|||||...+..-.+ -...| ..+-+|.= =+..+
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~ 111 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIA 111 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHc
Confidence 4899999999999999999854100 01111 11223310 01111
Q ss_pred ------HHHHHHHHHHHhcCCC------C-C-CCHHHHHHHHHHHhcCccEEEEEcCCCc-cCHHHHHHHHhcC---CCC
Q 003086 228 ------EEQIMRSMLRNLGDAS------A-G-DDRGELLRKINQYLLGKRYLIVMDDVWG-EDLAWWRRIYEGL---PKG 289 (849)
Q Consensus 228 ------~~~~~~~i~~~l~~~~------~-~-~~~~~~~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l---~~~ 289 (849)
..+....+++.++... + . ..-++..-.+.+.|-..+-+|+-|+--. -|...=+.+...+ ...
T Consensus 112 ~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~ 191 (226)
T COG1136 112 GKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKE 191 (226)
T ss_pred CCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHh
Confidence 2334455566655431 1 1 1233344456677778888899997422 1222223333333 334
Q ss_pred CCceEEEEecchhhhhhccc
Q 003086 290 KGSSIIITTRNGKVSQKMGV 309 (849)
Q Consensus 290 ~~s~ilvTtr~~~v~~~~~~ 309 (849)
.|..||+.|.+..+|..+..
T Consensus 192 ~g~tii~VTHd~~lA~~~dr 211 (226)
T COG1136 192 RGKTIIMVTHDPELAKYADR 211 (226)
T ss_pred cCCEEEEEcCCHHHHHhCCE
Confidence 48899999999999987653
No 321
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.82 E-value=0.12 Score=56.06 Aligned_cols=103 Identities=17% Similarity=0.121 Sum_probs=60.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcChhhh--cccCceEEEEeCCc-cCHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHH
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFNDREIE--NWFERRMWVSVSQT-FTEEQIMRSMLRNLGDASA-GDDRGELLRKINQY 258 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~l~~~ 258 (849)
..++|.++|+.|+||||.+.+++...... .+-..+..+++... .....-++..++.++.+.. ..+.+.+...+.+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 35799999999999999999887632211 11123555555432 1222335566666666533 33555555555543
Q ss_pred hcCccEEEEEcCCCcc--CHHHHHHHHhcCC
Q 003086 259 LLGKRYLIVMDDVWGE--DLAWWRRIYEGLP 287 (849)
Q Consensus 259 l~~~~~LlVlDdv~~~--~~~~~~~l~~~l~ 287 (849)
...-+|++|.+... +......+...+.
T Consensus 253 --~~~DlVLIDTaGr~~~~~~~l~el~~~l~ 281 (388)
T PRK12723 253 --KDFDLVLVDTIGKSPKDFMKLAEMKELLN 281 (388)
T ss_pred --CCCCEEEEcCCCCCccCHHHHHHHHHHHH
Confidence 44568999998552 2333445555444
No 322
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.81 E-value=0.038 Score=56.70 Aligned_cols=88 Identities=23% Similarity=0.304 Sum_probs=54.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhc----ccCceEEEEeCCccCHHHHHHHHHHHhcCCCC----------CCCHH
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIEN----WFERRMWVSVSQTFTEEQIMRSMLRNLGDASA----------GDDRG 249 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----------~~~~~ 249 (849)
..+.=|+|.+|+|||.||..++-...+.. .=..++|++....|+++.+. +|++....... ..+.+
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 45889999999999999987754322221 22358999999999887765 56666543211 12334
Q ss_pred HHHHHHH---HHh-cCccEEEEEcCCC
Q 003086 250 ELLRKIN---QYL-LGKRYLIVMDDVW 272 (849)
Q Consensus 250 ~~~~~l~---~~l-~~~~~LlVlDdv~ 272 (849)
++.+.+. ..+ .++--|||+|.+-
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHhhccccceEEEEecchH
Confidence 4433332 333 3445688888873
No 323
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.79 E-value=0.029 Score=60.25 Aligned_cols=86 Identities=20% Similarity=0.250 Sum_probs=51.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhccc--CceEEEEeCC-ccCHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHh
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWF--ERRMWVSVSQ-TFTEEQIMRSMLRNLGDASA-GDDRGELLRKINQYL 259 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~l~~~l 259 (849)
..++.++|+.|+||||++.++... ....+ ..+..++... .....+-++...+.++.+.. ..+..++...+.+ +
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~--~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-l 213 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR--CVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-L 213 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH-h
Confidence 468999999999999999999873 22222 3455665432 22344556666666665543 2222333333333 3
Q ss_pred cCccEEEEEcCCCc
Q 003086 260 LGKRYLIVMDDVWG 273 (849)
Q Consensus 260 ~~~~~LlVlDdv~~ 273 (849)
.++ -++++|..-.
T Consensus 214 ~~~-DlVLIDTaG~ 226 (374)
T PRK14722 214 RNK-HMVLIDTIGM 226 (374)
T ss_pred cCC-CEEEEcCCCC
Confidence 444 5666999854
No 324
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.77 E-value=0.046 Score=55.22 Aligned_cols=112 Identities=17% Similarity=0.212 Sum_probs=59.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCC-------------------
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASA------------------- 244 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------------------- 244 (849)
..++.|.|.+|+||||+|.+++... .+.. ..+++++.. .+..++.+.+ .+++....
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e--~~~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~~~~~~ 98 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQ--LTTTEFIKQM-MSLGYDINKKLISGKLLYIPVYPLLSG 98 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCC--CCHHHHHHHH-HHhCCchHHHhhcCcEEEEEecccccC
Confidence 4589999999999999987665531 1222 346677643 3456666665 33433111
Q ss_pred CCCHHHHHHHHHHHh-cCccEEEEEcCCCcc-----CHHHHHHHHhcCCC--CCCceEEEEecc
Q 003086 245 GDDRGELLRKINQYL-LGKRYLIVMDDVWGE-----DLAWWRRIYEGLPK--GKGSSIIITTRN 300 (849)
Q Consensus 245 ~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~-----~~~~~~~l~~~l~~--~~~s~ilvTtr~ 300 (849)
..+.+.....+.+.. ..+.-++|+|..-.. +...+..+...+.. ..|..+++|+..
T Consensus 99 ~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t~~~ 162 (230)
T PRK08533 99 NSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILTANP 162 (230)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 001122222333322 224568999997531 22233344443321 225567777653
No 325
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.099 Score=59.79 Aligned_cols=155 Identities=17% Similarity=0.185 Sum_probs=89.4
Q ss_pred CccccccccHHHHHHHHhcc----C-------CCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEA----E-------EGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEE 229 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~----~-------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 229 (849)
.++.|.+...+.+.+.+..+ + ...+.+.++|++|.|||.||+.+++. ...+| +.+...
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~--~~~~f-----i~v~~~---- 310 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALE--SRSRF-----ISVKGS---- 310 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhh--CCCeE-----EEeeCH----
Confidence 35566666666554443221 1 24568999999999999999999982 22333 333211
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCc--------cC---HHHHHHHHhcCCC---CCCceEE
Q 003086 230 QIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWG--------ED---LAWWRRIYEGLPK---GKGSSII 295 (849)
Q Consensus 230 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--------~~---~~~~~~l~~~l~~---~~~s~il 295 (849)
+ +....-+.+...+.+.+...-+..+.+|++|+++. .+ .....++...+.. ..+..||
T Consensus 311 ~--------l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi 382 (494)
T COG0464 311 E--------LLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVI 382 (494)
T ss_pred H--------HhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEE
Confidence 1 11111233444555555555568899999999854 10 1234444444432 2244455
Q ss_pred EEecchhhhh-hccc--cccccccCCCCChhhHHHHHHHHhh
Q 003086 296 ITTRNGKVSQ-KMGV--KKARMHFPKFLSEDDSWLLFRKIAF 334 (849)
Q Consensus 296 vTtr~~~v~~-~~~~--~~~~~~~l~~L~~~e~~~lf~~~~~ 334 (849)
-||....... .+.. .-...+.+.+-+.++..++|..+..
T Consensus 383 ~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 383 AATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred ecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 5554433222 1111 1125788899999999999999984
No 326
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.73 E-value=0.077 Score=49.55 Aligned_cols=114 Identities=19% Similarity=0.155 Sum_probs=59.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCC---ccCHHHHHHHHHHHh-----cCCC--CCCCHHH----
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQ---TFTEEQIMRSMLRNL-----GDAS--AGDDRGE---- 250 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~i~~~l-----~~~~--~~~~~~~---- 250 (849)
..|-|++..|.||||+|-...- +.-.+=..+.+|-.-. ......+++.+ ..+ +... ...+..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4688889999999999977755 2222222334433322 22333333332 000 0000 0011111
Q ss_pred ---HHHHHHHHhc-CccEEEEEcCCCcc---CHHHHHHHHhcCCCCC-CceEEEEecch
Q 003086 251 ---LLRKINQYLL-GKRYLIVMDDVWGE---DLAWWRRIYEGLPKGK-GSSIIITTRNG 301 (849)
Q Consensus 251 ---~~~~l~~~l~-~~~~LlVlDdv~~~---~~~~~~~l~~~l~~~~-~s~ilvTtr~~ 301 (849)
..+..++.+. +.-=|||||++-.. ..-..+.+...+...+ +..||+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 2222333443 44569999998431 1223445666666555 78999999983
No 327
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.73 E-value=0.023 Score=64.95 Aligned_cols=132 Identities=11% Similarity=0.083 Sum_probs=73.6
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHH-HHHHh
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRS-MLRNL 239 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~-i~~~l 239 (849)
..++|....++++++.+..-......|.|+|..|+||+++|+.+..... ..-...+.++|+.-. .+.+.. +....
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~--r~~~pfv~inca~~~--~~~~e~elFG~~ 279 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSP--RGKKPFLALNCASIP--DDVVESELFGHA 279 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCC--CCCCCeEEeccccCC--HHHHHHHhcCCC
Confidence 4689999988888887754322234578999999999999999865211 111233556665433 222222 11111
Q ss_pred cCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCCC------------CceEEEEecc
Q 003086 240 GDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK------------GSSIIITTRN 300 (849)
Q Consensus 240 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------~s~ilvTtr~ 300 (849)
.+...+.. +...-+.+ ....=.|+||+++.........+...+..+. ..+||.||..
T Consensus 280 ~~~~~~~~--~~~~g~~e--~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~ 348 (520)
T PRK10820 280 PGAYPNAL--EGKKGFFE--QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQK 348 (520)
T ss_pred CCCcCCcc--cCCCChhh--hcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCC
Confidence 11111100 00000011 1122357899999877777778877775531 2377877754
No 328
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.73 E-value=0.0079 Score=58.64 Aligned_cols=118 Identities=12% Similarity=0.077 Sum_probs=57.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCC----CCCHHHHHHHHHHHhcC
Q 003086 186 AIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASA----GDDRGELLRKINQYLLG 261 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~l~~~l~~ 261 (849)
++.|+|+.|.||||+.+.+.-.. +-.+-.+.+|-.-..- ....+++..++.... ..+...-..++...+..
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~-~la~~G~~v~a~~~~~----~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~ 75 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIV-IMAQIGSFVPAESAEL----PVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKN 75 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHH-HHHHhCCCeeehheEe----cccceEEEEeCCCCchhccccHHHHHHHHHHHHHHh
Confidence 46899999999999999987321 1111111111110000 000111111111110 11222222334444443
Q ss_pred --ccEEEEEcCCCcc-CHHH----HHHHHhcCCCCCCceEEEEecchhhhhhcc
Q 003086 262 --KRYLIVMDDVWGE-DLAW----WRRIYEGLPKGKGSSIIITTRNGKVSQKMG 308 (849)
Q Consensus 262 --~~~LlVlDdv~~~-~~~~----~~~l~~~l~~~~~s~ilvTtr~~~v~~~~~ 308 (849)
++-++++|+.-.. +... ...+...+....++.+|++|...++...+.
T Consensus 76 ~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~ 129 (185)
T smart00534 76 ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLAD 129 (185)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhh
Confidence 7899999998541 2221 122333333223778999999887766543
No 329
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.73 E-value=0.065 Score=51.50 Aligned_cols=101 Identities=17% Similarity=0.080 Sum_probs=56.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEE------eCCccCHHHHHHHHHHHhcCCCCCCCHH-HHHHHHH
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVS------VSQTFTEEQIMRSMLRNLGDASAGDDRG-ELLRKIN 256 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~------~s~~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~~l~ 256 (849)
-.+++|+|..|.|||||++.+..-.. .....+++. +.+... -+.. ...-.+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~la 83 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIA 83 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHH
Confidence 35899999999999999999976311 112222221 111111 1112 2223344
Q ss_pred HHhcCccEEEEEcCCCc-cCHHHHHHHHhcCCC---CCCceEEEEecchhhhh
Q 003086 257 QYLLGKRYLIVMDDVWG-EDLAWWRRIYEGLPK---GKGSSIIITTRNGKVSQ 305 (849)
Q Consensus 257 ~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~---~~~s~ilvTtr~~~v~~ 305 (849)
..+..++-++++|+--. -|....+.+...+.. ..+..||++|.+.....
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 55666778999998754 234444444444432 22366788887755444
No 330
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.71 E-value=0.054 Score=55.61 Aligned_cols=89 Identities=18% Similarity=0.169 Sum_probs=58.0
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHH-hcCC--CCCCCHHHHHHH---H
Q 003086 182 EGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRN-LGDA--SAGDDRGELLRK---I 255 (849)
Q Consensus 182 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~-l~~~--~~~~~~~~~~~~---l 255 (849)
+.-+++=|+|+.|.||||+|.+++-. .+..-..++|++..+.++++.+.. +... +..- ..+.+.++..+. +
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 45689999999999999999888763 444445789999999998876543 3333 2111 113344433333 3
Q ss_pred HHHhcCccEEEEEcCCCc
Q 003086 256 NQYLLGKRYLIVMDDVWG 273 (849)
Q Consensus 256 ~~~l~~~~~LlVlDdv~~ 273 (849)
......+--|+|+|.+-.
T Consensus 135 ~~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 135 ARSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HHhccCCCCEEEEecCcc
Confidence 333333457999999843
No 331
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.71 E-value=0.066 Score=57.95 Aligned_cols=94 Identities=21% Similarity=0.206 Sum_probs=53.8
Q ss_pred HHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCC------C
Q 003086 172 KIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASA------G 245 (849)
Q Consensus 172 ~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------~ 245 (849)
.+-+.|..+=..-.++.|.|.+|+|||||+..++.. ....-..++|++..+. ..++.. -++.++.... .
T Consensus 70 eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~qi~~-Ra~rlg~~~~~l~l~~e 144 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQIKL-RADRLGISTENLYLLAE 144 (372)
T ss_pred HHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHHHHH-HHHHcCCCcccEEEEcc
Confidence 333444333223568999999999999999998763 2223346778876543 333322 2344543321 2
Q ss_pred CCHHHHHHHHHHHhcCccEEEEEcCCCc
Q 003086 246 DDRGELLRKINQYLLGKRYLIVMDDVWG 273 (849)
Q Consensus 246 ~~~~~~~~~l~~~l~~~~~LlVlDdv~~ 273 (849)
.+.+.+.+.+. ..+.-+||+|.+..
T Consensus 145 ~~le~I~~~i~---~~~~~lVVIDSIq~ 169 (372)
T cd01121 145 TNLEDILASIE---ELKPDLVIIDSIQT 169 (372)
T ss_pred CcHHHHHHHHH---hcCCcEEEEcchHH
Confidence 23444444443 23556888888743
No 332
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.68 E-value=0.042 Score=54.06 Aligned_cols=125 Identities=18% Similarity=0.241 Sum_probs=68.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCh-------------hhh-----cccCceEEE--EeCCc----cCHHHH--------
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDR-------------EIE-----NWFERRMWV--SVSQT----FTEEQI-------- 231 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~-------------~~~-----~~f~~~~wv--~~s~~----~~~~~~-------- 231 (849)
-.+++|+|..|.|||||++.+.--. ... ..|..+-.| +-... .++.++
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~ 112 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH 112 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccC
Confidence 3589999999999999999995410 001 112222122 11111 122222
Q ss_pred --------HHHHHHHhcCCCC-------CCCHHHHH-HHHHHHhcCccEEEEEcCCCc-cCHHHHHHHHhcCCC---CCC
Q 003086 232 --------MRSMLRNLGDASA-------GDDRGELL-RKINQYLLGKRYLIVMDDVWG-EDLAWWRRIYEGLPK---GKG 291 (849)
Q Consensus 232 --------~~~i~~~l~~~~~-------~~~~~~~~-~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~---~~~ 291 (849)
..+++++++.+.. .-+-.+.+ -.+.+.|.-++-+||+|+.-+ -|.....++...|.. ..+
T Consensus 113 ~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~ 192 (252)
T COG1124 113 GLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERG 192 (252)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcC
Confidence 3344555554421 11223332 345566777788999999754 234444445544443 336
Q ss_pred ceEEEEecchhhhhhcc
Q 003086 292 SSIIITTRNGKVSQKMG 308 (849)
Q Consensus 292 s~ilvTtr~~~v~~~~~ 308 (849)
-.+|+-|.+..+...+.
T Consensus 193 lt~l~IsHdl~~v~~~c 209 (252)
T COG1124 193 LTYLFISHDLALVEHMC 209 (252)
T ss_pred ceEEEEeCcHHHHHHHh
Confidence 77888888877666554
No 333
>PRK13695 putative NTPase; Provisional
Probab=95.68 E-value=0.013 Score=56.53 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003086 186 AIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
.|+|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998764
No 334
>PRK14974 cell division protein FtsY; Provisional
Probab=95.66 E-value=0.086 Score=56.06 Aligned_cols=100 Identities=18% Similarity=0.139 Sum_probs=54.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccC--HHHHHHHHHHHhcCCCC----CCCHHHH-HHHH
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFT--EEQIMRSMLRNLGDASA----GDDRGEL-LRKI 255 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~----~~~~~~~-~~~l 255 (849)
+..+|.++|++|+||||++.+++.. ....=..++.+.. ..+. ..+-++.....++.+.. +.+.... .+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~--l~~~g~~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYY--LKKNGFSVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCCeEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 4689999999999999988888763 2222113444443 2222 23345556666665432 2232232 2333
Q ss_pred HHHhcCccEEEEEcCCCcc--CHHHHHHHHhc
Q 003086 256 NQYLLGKRYLIVMDDVWGE--DLAWWRRIYEG 285 (849)
Q Consensus 256 ~~~l~~~~~LlVlDdv~~~--~~~~~~~l~~~ 285 (849)
...-....=+|++|-.-.. +...++.+...
T Consensus 216 ~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i 247 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRMHTDANLMDELKKI 247 (336)
T ss_pred HHHHhCCCCEEEEECCCccCCcHHHHHHHHHH
Confidence 3322222239999988653 34445555443
No 335
>PTZ00035 Rad51 protein; Provisional
Probab=95.66 E-value=0.079 Score=56.68 Aligned_cols=100 Identities=12% Similarity=0.154 Sum_probs=58.4
Q ss_pred HHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhh----hcccCceEEEEeCCccCHHHHHHHHHHHhcCCCC---
Q 003086 172 KIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREI----ENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASA--- 244 (849)
Q Consensus 172 ~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~--- 244 (849)
.+-++|..+=..-.++.|+|.+|+|||||+..++-.... ...=..++|++....++++. +.++++.++....
T Consensus 106 ~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~~~~~~l 184 (337)
T PTZ00035 106 QLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGLDPEDVL 184 (337)
T ss_pred HHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCCChHhHh
Confidence 333444443334678999999999999999888643221 11123567999888887776 3455555544311
Q ss_pred -------CCCHHHHHHHHH---HHh-cCccEEEEEcCCC
Q 003086 245 -------GDDRGELLRKIN---QYL-LGKRYLIVMDDVW 272 (849)
Q Consensus 245 -------~~~~~~~~~~l~---~~l-~~~~~LlVlDdv~ 272 (849)
..+.+++.+.+. ..+ .++--|||+|-+.
T Consensus 185 ~nI~~~~~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSit 223 (337)
T PTZ00035 185 DNIAYARAYNHEHQMQLLSQAAAKMAEERFALLIVDSAT 223 (337)
T ss_pred hceEEEccCCHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 123333333332 222 2344588888874
No 336
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=95.66 E-value=0.022 Score=64.56 Aligned_cols=129 Identities=14% Similarity=0.179 Sum_probs=74.8
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcCh-hhhcccCceEEEEeCCccCHHHHHHHHHHHh
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDR-EIENWFERRMWVSVSQTFTEEQIMRSMLRNL 239 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~-~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 239 (849)
.+++|....++++.+.+..-......|.|.|..|+||+++|+.+++.. +-. ...+-|+|..-. +..+.. .+
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~---~pfv~inC~~l~--e~lles---eL 283 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRD---FPFVAINCGAIA--ESLLEA---EL 283 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCC---CCEEEeccccCC--hhHHHH---Hh
Confidence 358999999999988876533334578899999999999999998642 111 123444554332 222222 22
Q ss_pred cCCCC----CCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCCC------------CceEEEEecc
Q 003086 240 GDASA----GDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK------------GSSIIITTRN 300 (849)
Q Consensus 240 ~~~~~----~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------~s~ilvTtr~ 300 (849)
.+... +........ +.+. ...=.|+||++..........+...+..+. ..+||.||..
T Consensus 284 FG~~~gaftga~~~~~~G-l~e~--A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~ 357 (526)
T TIGR02329 284 FGYEEGAFTGARRGGRTG-LIEA--AHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHC 357 (526)
T ss_pred cCCccccccccccccccc-chhh--cCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCC
Confidence 22111 100000000 0010 122359999999877888888888776432 2377777753
No 337
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.65 E-value=0.062 Score=51.71 Aligned_cols=116 Identities=20% Similarity=0.188 Sum_probs=60.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcC---CC---CC--------CCHH
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGD---AS---AG--------DDRG 249 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~---~~---~~--------~~~~ 249 (849)
-.+++|+|..|.|||||++.+..... .....+++.-....+.. ..+...++. .. .. -+..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 35899999999999999999976311 12222332110000000 000011100 00 00 1222
Q ss_pred H-HHHHHHHHhcCccEEEEEcCCCc-cCHHHHHHHHhcCCCC--CCceEEEEecchhhhh
Q 003086 250 E-LLRKINQYLLGKRYLIVMDDVWG-EDLAWWRRIYEGLPKG--KGSSIIITTRNGKVSQ 305 (849)
Q Consensus 250 ~-~~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~s~ilvTtr~~~v~~ 305 (849)
+ ..-.+...+..++-++++|+--. -|....+.+...+..- .|..||++|.+.....
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 2 22245566677888999999754 3444445555544331 2677888888766544
No 338
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.64 E-value=0.054 Score=57.75 Aligned_cols=65 Identities=25% Similarity=0.309 Sum_probs=43.7
Q ss_pred HHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhc----ccCceEEEEeCCccCHHHHHHHHHHHhc
Q 003086 175 DWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIEN----WFERRMWVSVSQTFTEEQIMRSMLRNLG 240 (849)
Q Consensus 175 ~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 240 (849)
++|..+=....++-|+|.+|+|||+++..++....... .=..++||+....++++.+. ++++.++
T Consensus 86 ~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 86 ELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred HHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 34433323467889999999999999998865422210 11368999999888877654 4455544
No 339
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.63 E-value=0.051 Score=52.31 Aligned_cols=117 Identities=15% Similarity=0.219 Sum_probs=58.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCC--ccCHHHHHHHHHHHhcCCCC--C-------CCHHH-HH
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQ--TFTEEQIMRSMLRNLGDASA--G-------DDRGE-LL 252 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~--~~~~~~~~~~i~~~l~~~~~--~-------~~~~~-~~ 252 (849)
.+++|+|..|.|||||.+.+..-. ......+++.-.. ..........+. .+..... . -+..+ ..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~~~lLS~G~~qr 104 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNELGDHVG-YLPQDDELFSGSIAENILSGGQRQR 104 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHHHHhheE-EECCCCccccCcHHHHCcCHHHHHH
Confidence 589999999999999999997631 1122222221100 011111111100 0000000 0 11122 22
Q ss_pred HHHHHHhcCccEEEEEcCCCc-cCHHHHHHHHhcCCC--CCCceEEEEecchhhhh
Q 003086 253 RKINQYLLGKRYLIVMDDVWG-EDLAWWRRIYEGLPK--GKGSSIIITTRNGKVSQ 305 (849)
Q Consensus 253 ~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~--~~~s~ilvTtr~~~v~~ 305 (849)
-.+...+..++-++++|+... -|......+...+.. ..|..||++|.+.....
T Consensus 105 v~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 105 LGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 234445556667999999754 334444444444432 23677888888766554
No 340
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.16 Score=57.25 Aligned_cols=178 Identities=14% Similarity=0.141 Sum_probs=99.3
Q ss_pred CccccccccHHHHHHHHhccCC-----------CeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEE-----------GILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEE 229 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~-----------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 229 (849)
.++-|..+.++.+.+.+.-+.. ...-|.++|++|.|||-||..+..... .-+++|-.+
T Consensus 667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~-------~~fisvKGP---- 735 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN-------LRFISVKGP---- 735 (952)
T ss_pred eecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC-------eeEEEecCH----
Confidence 4566777777777777655421 234588999999999999999876321 235666644
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCcc-----------CHHHHHHHHhcCCC--CC-CceEE
Q 003086 230 QIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGE-----------DLAWWRRIYEGLPK--GK-GSSII 295 (849)
Q Consensus 230 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------~~~~~~~l~~~l~~--~~-~s~il 295 (849)
+++...- +.+++.....+.+.-.-++++++||.+++- +.....++...+.. +- |--|+
T Consensus 736 ----ElL~KyI----GaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~ 807 (952)
T KOG0735|consen 736 ----ELLSKYI----GASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYIL 807 (952)
T ss_pred ----HHHHHHh----cccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEE
Confidence 2222221 234445555555555679999999998651 12334455555543 22 55555
Q ss_pred E-Eecchhhhhhcc-cc-ccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhH
Q 003086 296 I-TTRNGKVSQKMG-VK-KARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLA 363 (849)
Q Consensus 296 v-Ttr~~~v~~~~~-~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLa 363 (849)
- |||..-+-...- .. -...+.-..-++.|-.++|...+..... ...-..+.++.+..|..-|
T Consensus 808 aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~------~~~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 808 AATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLK------DTDVDLECLAQKTDGFTGA 872 (952)
T ss_pred EecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCC------ccccchHHHhhhcCCCchh
Confidence 4 445432222111 11 1123333445677888888877632111 1122235677777777644
No 341
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=95.59 E-value=0.06 Score=61.17 Aligned_cols=129 Identities=13% Similarity=0.208 Sum_probs=73.2
Q ss_pred ccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcC
Q 003086 162 LVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGD 241 (849)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 241 (849)
.++|......++.+.+..-......+.|.|..|+||+++|+.+..... ......+-++++.- ..+.+...+ ++.
T Consensus 135 ~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~--~~~~~~~~~~c~~~--~~~~~~~~l--fg~ 208 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSP--RANGPFIALNMAAI--PKDLIESEL--FGH 208 (463)
T ss_pred ceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCC--CCCCCeEEEeCCCC--CHHHHHHHh--cCC
Confidence 478887777777777655333345678999999999999999976321 11222334444433 223333332 221
Q ss_pred CC---CCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCCC------------CceEEEEecc
Q 003086 242 AS---AGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK------------GSSIIITTRN 300 (849)
Q Consensus 242 ~~---~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------~s~ilvTtr~ 300 (849)
.. .+... . .....-....-.|+||++.......+..+...+..+. ..+||+||..
T Consensus 209 ~~~~~~~~~~-~---~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~ 278 (463)
T TIGR01818 209 EKGAFTGANT-R---RQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQ 278 (463)
T ss_pred CCCCCCCccc-C---CCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCC
Confidence 11 11000 0 0000011123458999998877788888887776432 3478888864
No 342
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.59 E-value=0.11 Score=53.91 Aligned_cols=88 Identities=19% Similarity=0.220 Sum_probs=49.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCH--HHHHHHHHHHhcCCC----CCCCH-HHHHHHH
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTE--EQIMRSMLRNLGDAS----AGDDR-GELLRKI 255 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~----~~~~~-~~~~~~l 255 (849)
..++|.++|++|+||||++.+++.. ....-..+.++++.. +.. .+-+....+..+.+. .+.+. ......+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 4689999999999999999888763 333323455665442 222 233334444444321 11222 2223444
Q ss_pred HHHhcCccEEEEEcCCCc
Q 003086 256 NQYLLGKRYLIVMDDVWG 273 (849)
Q Consensus 256 ~~~l~~~~~LlVlDdv~~ 273 (849)
.....+..=++++|-.-.
T Consensus 148 ~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHCCCCEEEEeCCCC
Confidence 444444456888998744
No 343
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=95.56 E-value=0.023 Score=64.38 Aligned_cols=129 Identities=16% Similarity=0.187 Sum_probs=74.4
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcC---------hhhhcccCceEEEEeCCccCHHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFND---------REIENWFERRMWVSVSQTFTEEQI 231 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~---------~~~~~~f~~~~wv~~s~~~~~~~~ 231 (849)
.+++|....++++.+.+..-......|.|.|..|+||+++|+.+.+. .+... ..+-|+|+.-. +..
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~---pfv~inCaal~--e~l 293 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSH---PFVAVNCGAIA--ESL 293 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCC---CeEEeecccCC--hhh
Confidence 35899999999998887653333457889999999999999999874 11111 22444444322 222
Q ss_pred HHHHHHHhcCCCC----CCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCCC------------CceEE
Q 003086 232 MRSMLRNLGDASA----GDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK------------GSSII 295 (849)
Q Consensus 232 ~~~i~~~l~~~~~----~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------~s~il 295 (849)
+... +.+... +.......-.+ + ....=.|+||++..........+...+..+. ..|||
T Consensus 294 lese---LFG~~~gaftga~~~~~~Gl~-e--~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiI 367 (538)
T PRK15424 294 LEAE---LFGYEEGAFTGSRRGGRAGLF-E--IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVI 367 (538)
T ss_pred HHHH---hcCCccccccCccccccCCch-h--ccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEE
Confidence 2222 222111 10000000001 1 0122369999998877888888888776532 23777
Q ss_pred EEecc
Q 003086 296 ITTRN 300 (849)
Q Consensus 296 vTtr~ 300 (849)
.||..
T Consensus 368 aat~~ 372 (538)
T PRK15424 368 SATHC 372 (538)
T ss_pred EecCC
Confidence 77743
No 344
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.54 E-value=0.088 Score=58.22 Aligned_cols=102 Identities=16% Similarity=0.132 Sum_probs=54.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCcc-CHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhcC
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTF-TEEQIMRSMLRNLGDASA-GDDRGELLRKINQYLLG 261 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~-~~~~~~~~~~l~~~l~~ 261 (849)
.+++.++|++|+||||++..+.........-..+..|+....- ...+-+....+.++.+.. ..+..++...+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C-
Confidence 3589999999999999998886532101222346666654321 112233333444444332 23444555555542 2
Q ss_pred ccEEEEEcCCCc--cCHHHHHHHHhcCC
Q 003086 262 KRYLIVMDDVWG--EDLAWWRRIYEGLP 287 (849)
Q Consensus 262 ~~~LlVlDdv~~--~~~~~~~~l~~~l~ 287 (849)
..=+|++|..-. .+....+.+...+.
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~ 326 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIE 326 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 346889997633 23334444544444
No 345
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.064 Score=63.29 Aligned_cols=118 Identities=12% Similarity=0.121 Sum_probs=71.7
Q ss_pred CccccccccHHHHHHHHhccC------CCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEAE------EGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRS 234 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 234 (849)
..++|-++.+..|.+.+.... .......+.|+.|+|||-||+.+.. .+-+..+..+-++.| +...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDms------e~~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMS------EFQE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechh------hhhh-
Confidence 357788888888888776531 1466788999999999999999876 232223333444333 2222
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHhcCcc-EEEEEcCCCccCHHHHHHHHhcCCC
Q 003086 235 MLRNLGDASAGDDRGELLRKINQYLLGKR-YLIVMDDVWGEDLAWWRRIYEGLPK 288 (849)
Q Consensus 235 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~-~LlVlDdv~~~~~~~~~~l~~~l~~ 288 (849)
+.+.++.+.. --..+....|.+.++.++ .+|+||||...+......+...+..
T Consensus 633 vskligsp~g-yvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~ 686 (898)
T KOG1051|consen 633 VSKLIGSPPG-YVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDR 686 (898)
T ss_pred hhhccCCCcc-cccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhc
Confidence 2223333221 111112224445555554 5888999998888888877776654
No 346
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.52 E-value=0.1 Score=50.15 Aligned_cols=116 Identities=17% Similarity=0.192 Sum_probs=58.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCC--ccCHHHHHHHHHHHhcC--CCC---C-------CCHH
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQ--TFTEEQIMRSMLRNLGD--ASA---G-------DDRG 249 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~--~~~~~~~~~~i~~~l~~--~~~---~-------~~~~ 249 (849)
-.+++|+|..|.|||||.+.++.-. ......+++.-.. ....... ...++. ... . -+..
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHH
Confidence 3589999999999999999997731 1122222221100 0011111 011110 000 0 1112
Q ss_pred H-HHHHHHHHhcCccEEEEEcCCCc-cCHHHHHHHHhcCCCC-CCceEEEEecchhhhhh
Q 003086 250 E-LLRKINQYLLGKRYLIVMDDVWG-EDLAWWRRIYEGLPKG-KGSSIIITTRNGKVSQK 306 (849)
Q Consensus 250 ~-~~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~s~ilvTtr~~~v~~~ 306 (849)
+ ..-.+...+..++-+++||+-.. -|....+.+...+..- .+..||++|.+.+....
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 2 12234455666778999999754 2344444444444321 25678888887665543
No 347
>PRK04328 hypothetical protein; Provisional
Probab=95.51 E-value=0.07 Score=54.70 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=30.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCc
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQT 225 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 225 (849)
.-.++.|.|.+|.|||+||..+.... . ..-...+|++....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~-~-~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-H-hcCCcEEEEEeeCC
Confidence 45789999999999999999876631 2 23456788887653
No 348
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.51 E-value=0.096 Score=50.77 Aligned_cols=117 Identities=17% Similarity=0.253 Sum_probs=64.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEE---eCCccCHHHHHH------HHHHHhcCCC------CCCCH
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVS---VSQTFTEEQIMR------SMLRNLGDAS------AGDDR 248 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~---~s~~~~~~~~~~------~i~~~l~~~~------~~~~~ 248 (849)
-.+++|+|..|.|||||++.++.-. ......+++. +. ..+...+.. ++++.++... ..-+.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 3589999999999999999998731 2233333332 21 112222111 1344444321 11122
Q ss_pred HH-HHHHHHHHhcCccEEEEEcCCCc-cCHHHHHHHHhcCCC--CC-CceEEEEecchhhh
Q 003086 249 GE-LLRKINQYLLGKRYLIVMDDVWG-EDLAWWRRIYEGLPK--GK-GSSIIITTRNGKVS 304 (849)
Q Consensus 249 ~~-~~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~--~~-~s~ilvTtr~~~v~ 304 (849)
.+ ..-.+...+...+-++++|+--. -|....+.+...+.. .. +..||++|.+....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 22 22334555666778999999754 344445555554432 22 67788888775543
No 349
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.50 E-value=0.015 Score=60.24 Aligned_cols=89 Identities=20% Similarity=0.264 Sum_probs=46.5
Q ss_pred HHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHH
Q 003086 171 RKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGE 250 (849)
Q Consensus 171 ~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~ 250 (849)
..+++.+... .+-|.++|+.|+|||++++....... ...| ...-++.+...+...++.-+-..+..... ....
T Consensus 23 ~~ll~~l~~~---~~pvLl~G~~GtGKT~li~~~l~~l~-~~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~-~~~g- 95 (272)
T PF12775_consen 23 SYLLDLLLSN---GRPVLLVGPSGTGKTSLIQNFLSSLD-SDKY-LVITINFSAQTTSNQLQKIIESKLEKRRG-RVYG- 95 (272)
T ss_dssp HHHHHHHHHC---TEEEEEESSTTSSHHHHHHHHHHCST-TCCE-EEEEEES-TTHHHHHHHHCCCTTECECTT-EEEE-
T ss_pred HHHHHHHHHc---CCcEEEECCCCCchhHHHHhhhccCC-cccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCC-CCCC-
Confidence 4455655554 35678999999999999999876311 1111 13344555443333332211111111000 0000
Q ss_pred HHHHHHHHhcCccEEEEEcCCCc
Q 003086 251 LLRKINQYLLGKRYLIVMDDVWG 273 (849)
Q Consensus 251 ~~~~l~~~l~~~~~LlVlDdv~~ 273 (849)
--.+|+.++++||+.-
T Consensus 96 -------P~~~k~lv~fiDDlN~ 111 (272)
T PF12775_consen 96 -------PPGGKKLVLFIDDLNM 111 (272)
T ss_dssp -------EESSSEEEEEEETTT-
T ss_pred -------CCCCcEEEEEecccCC
Confidence 0136889999999965
No 350
>PRK10867 signal recognition particle protein; Provisional
Probab=95.48 E-value=0.062 Score=59.14 Aligned_cols=24 Identities=42% Similarity=0.459 Sum_probs=20.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+.+|.++|.+|+||||+|.+++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 368999999999999998877765
No 351
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.48 E-value=0.0096 Score=54.05 Aligned_cols=21 Identities=48% Similarity=0.773 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 003086 187 IGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 187 i~I~G~~GiGKTtLa~~v~~~ 207 (849)
|+|.|.+|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999773
No 352
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.48 E-value=0.088 Score=49.66 Aligned_cols=122 Identities=15% Similarity=0.230 Sum_probs=69.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEE---------------------eCCc-----------------
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVS---------------------VSQT----------------- 225 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~---------------------~s~~----------------- 225 (849)
-..+.|+|+.|.||||+.+.+|...+.. ...+|+. |-++
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL 104 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPL 104 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhh
Confidence 3588999999999999999998853321 1122221 0000
Q ss_pred -------cCHHHHHHHHHHHhcCCCC-------CCCHHHHHHHHHHHhcCccEEEEEcCCCc-cC-HHHHHHHHhcCCC-
Q 003086 226 -------FTEEQIMRSMLRNLGDASA-------GDDRGELLRKINQYLLGKRYLIVMDDVWG-ED-LAWWRRIYEGLPK- 288 (849)
Q Consensus 226 -------~~~~~~~~~i~~~l~~~~~-------~~~~~~~~~~l~~~l~~~~~LlVlDdv~~-~~-~~~~~~l~~~l~~- 288 (849)
....+-..+.++.++.... -+.-++..-.+.+.+-+++-+|+=|+--. -| .-.|+-+ ..|..
T Consensus 105 ~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im-~lfeei 183 (223)
T COG2884 105 RVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIM-RLFEEI 183 (223)
T ss_pred hccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHH-HHHHHH
Confidence 1122233333444443321 11233444456666677888888886422 12 4455433 34433
Q ss_pred CC-CceEEEEecchhhhhhccc
Q 003086 289 GK-GSSIIITTRNGKVSQKMGV 309 (849)
Q Consensus 289 ~~-~s~ilvTtr~~~v~~~~~~ 309 (849)
+. |..||++|.+.++...+..
T Consensus 184 nr~GtTVl~ATHd~~lv~~~~~ 205 (223)
T COG2884 184 NRLGTTVLMATHDLELVNRMRH 205 (223)
T ss_pred hhcCcEEEEEeccHHHHHhccC
Confidence 34 9999999999887776643
No 353
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.46 E-value=0.071 Score=53.59 Aligned_cols=117 Identities=18% Similarity=0.254 Sum_probs=66.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC--hh---hh------ccc---CceEEEEeCC----c--cCH----------------
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFND--RE---IE------NWF---ERRMWVSVSQ----T--FTE---------------- 228 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~--~~---~~------~~f---~~~~wv~~s~----~--~~~---------------- 228 (849)
..++|+|+.|.|||||.+.+..- +. +. ..+ ..+.||.=.. . .++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 68999999999999999999761 00 00 001 2355653211 1 111
Q ss_pred ------HHHHHHHHHHhcCCCC------CCCHHHHHH-HHHHHhcCccEEEEEcCCCc-cCHH---HHHHHHhcCCCCCC
Q 003086 229 ------EQIMRSMLRNLGDASA------GDDRGELLR-KINQYLLGKRYLIVMDDVWG-EDLA---WWRRIYEGLPKGKG 291 (849)
Q Consensus 229 ------~~~~~~i~~~l~~~~~------~~~~~~~~~-~l~~~l~~~~~LlVlDdv~~-~~~~---~~~~l~~~l~~~~~ 291 (849)
.+...+.++.++...- .-+-.+.+. .|.+.|..++=|++||+--. .|.. ..-.+...+... |
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g 189 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-G 189 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-C
Confidence 2444455555554321 224444443 35567888889999998533 2233 333333344434 8
Q ss_pred ceEEEEecchh
Q 003086 292 SSIIITTRNGK 302 (849)
Q Consensus 292 s~ilvTtr~~~ 302 (849)
..||+.|-+-.
T Consensus 190 ~tIl~vtHDL~ 200 (254)
T COG1121 190 KTVLMVTHDLG 200 (254)
T ss_pred CEEEEEeCCcH
Confidence 89999998743
No 354
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.46 E-value=0.12 Score=58.30 Aligned_cols=57 Identities=21% Similarity=0.350 Sum_probs=42.6
Q ss_pred CccccccccHHHHHHHHhcc---CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEE
Q 003086 161 TLVVGLEGDTRKIKDWLFEA---EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVS 221 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 221 (849)
.+++--.+-++++..||... ....+++.+.|++|+||||.++.++++ -.|+.+-|.+
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~e----lg~~v~Ew~n 78 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKE----LGFEVQEWIN 78 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHH----hCCeeEEecC
Confidence 34555667788999999763 234579999999999999999999874 2355566764
No 355
>PRK15115 response regulator GlrR; Provisional
Probab=95.45 E-value=0.15 Score=57.60 Aligned_cols=131 Identities=15% Similarity=0.134 Sum_probs=70.4
Q ss_pred ccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHH-HHHhc
Q 003086 162 LVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSM-LRNLG 240 (849)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i-~~~l~ 240 (849)
.++|....+.++.+....-......|.|+|.+|+|||++|+.+.+...- .-...+.+++..- + ...+... .....
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r--~~~~f~~i~c~~~-~-~~~~~~~lfg~~~ 210 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPR--ASKPFIAINCGAL-P-EQLLESELFGHAR 210 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCC--CCCCeEEEeCCCC-C-HHHHHHHhcCCCc
Confidence 4678777777776655443222346789999999999999998773211 1122344444432 2 2222222 11111
Q ss_pred CCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCCC------------CceEEEEecc
Q 003086 241 DASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK------------GSSIIITTRN 300 (849)
Q Consensus 241 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------~s~ilvTtr~ 300 (849)
+...+.... ...+ .-....-.|+||++..-.......+...+..+. ..+||.||..
T Consensus 211 ~~~~~~~~~--~~g~--~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~ 278 (444)
T PRK15115 211 GAFTGAVSN--REGL--FQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHR 278 (444)
T ss_pred CCCCCCccC--CCCc--EEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCC
Confidence 111100000 0000 001123479999999877888888887775432 3478887764
No 356
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.42 E-value=0.22 Score=54.52 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..+|+++|+.|+||||++..+..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999998865
No 357
>PRK13948 shikimate kinase; Provisional
Probab=95.42 E-value=0.15 Score=49.15 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..+.|.++|+.|+||||+++.+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999976
No 358
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.36 E-value=0.13 Score=52.30 Aligned_cols=119 Identities=15% Similarity=0.080 Sum_probs=79.0
Q ss_pred CCccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHh
Q 003086 160 HTLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNL 239 (849)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 239 (849)
.++|+|-.. .+++..++.......+.+.|+|+.|+|||+-++++++. .+...-+..++.+....+...+....
T Consensus 71 ~~~~l~tkt-~r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~~ 143 (297)
T COG2842 71 APDFLETKT-VRRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAAA 143 (297)
T ss_pred cccccccch-hHhHhhhhhhhhhcCceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHHH
Confidence 345666544 33444444443333458899999999999999999884 22233446666777777777666665
Q ss_pred cCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcC
Q 003086 240 GDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGL 286 (849)
Q Consensus 240 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l 286 (849)
..... .........+...+.+..-+++.|+...-....++.++...
T Consensus 144 ~~~~~-~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~ 189 (297)
T COG2842 144 FGATD-GTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIH 189 (297)
T ss_pred hcccc-hhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHH
Confidence 54433 24445555666667888899999999887778888777654
No 359
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.34 E-value=0.13 Score=52.11 Aligned_cols=47 Identities=21% Similarity=0.288 Sum_probs=32.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHH
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMR 233 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 233 (849)
.-.++.|.|.+|+||||+|..+.... . ..-..++|++.... .+.+.+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~-~-~~g~~~~~is~e~~--~~~i~~ 65 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG-L-RDGDPVIYVTTEES--RESIIR 65 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-H-hcCCeEEEEEccCC--HHHHHH
Confidence 45789999999999999999876531 2 22346788877443 344433
No 360
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.33 E-value=0.23 Score=51.16 Aligned_cols=125 Identities=18% Similarity=0.167 Sum_probs=67.2
Q ss_pred cHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEE---eCCccCHHHHHHHHHHHhcCCC-C
Q 003086 169 DTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVS---VSQTFTEEQIMRSMLRNLGDAS-A 244 (849)
Q Consensus 169 ~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~---~s~~~~~~~~~~~i~~~l~~~~-~ 244 (849)
..+.++..|... .....++|+|..|.|||||.+.+... +. .....+++. +.......++ ......-. .
T Consensus 97 ~~~~~l~~l~~~-~~~~~~~i~g~~g~GKttl~~~l~~~--~~-~~~G~i~~~g~~v~~~d~~~ei----~~~~~~~~q~ 168 (270)
T TIGR02858 97 AADKLLPYLVRN-NRVLNTLIISPPQCGKTTLLRDLARI--LS-TGISQLGLRGKKVGIVDERSEI----AGCVNGVPQH 168 (270)
T ss_pred cHHHHHHHHHhC-CCeeEEEEEcCCCCCHHHHHHHHhCc--cC-CCCceEEECCEEeecchhHHHH----HHHhcccccc
Confidence 344555555543 23578999999999999999999873 21 222233331 1111112222 22221110 0
Q ss_pred --C---C--CHHHHHHHHHHHh-cCccEEEEEcCCCccCHHHHHHHHhcCCCCCCceEEEEecchhhhh
Q 003086 245 --G---D--DRGELLRKINQYL-LGKRYLIVMDDVWGEDLAWWRRIYEGLPKGKGSSIIITTRNGKVSQ 305 (849)
Q Consensus 245 --~---~--~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~s~ilvTtr~~~v~~ 305 (849)
. + +.......+...+ ...+-++++|.+-. .+.+..+...+. .|..||+||....+..
T Consensus 169 ~~~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~--~e~~~~l~~~~~--~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 169 DVGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGR--EEDVEALLEALH--AGVSIIATAHGRDVED 233 (270)
T ss_pred cccccccccccchHHHHHHHHHHhCCCCEEEEeCCCc--HHHHHHHHHHHh--CCCEEEEEechhHHHH
Confidence 0 0 1011122233322 24677999999976 666666666553 4778999998755533
No 361
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.32 E-value=0.06 Score=50.87 Aligned_cols=115 Identities=19% Similarity=0.218 Sum_probs=61.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCcc--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTF--TEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGK 262 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 262 (849)
.+++|+|..|.|||||++.+.... ......+++.-.... ..... ...+.....-..-+...-.+...+...
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~qlS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEEL----RRRIGYVPQLSGGQRQRVALARALLLN 98 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHHH----HhceEEEeeCCHHHHHHHHHHHHHhcC
Confidence 589999999999999999997732 123334443221111 11111 111111100111122223345555566
Q ss_pred cEEEEEcCCCc-cCHHHHHHHHhcCCC--CCCceEEEEecchhhhhh
Q 003086 263 RYLIVMDDVWG-EDLAWWRRIYEGLPK--GKGSSIIITTRNGKVSQK 306 (849)
Q Consensus 263 ~~LlVlDdv~~-~~~~~~~~l~~~l~~--~~~s~ilvTtr~~~v~~~ 306 (849)
+-++++|+... .|......+...+.. ..+..++++|........
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 78999999854 234444444444432 125678888877665544
No 362
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.31 E-value=0.057 Score=59.40 Aligned_cols=24 Identities=38% Similarity=0.378 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+.++.++|.+|+||||+|..++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 367999999999999999988876
No 363
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.31 E-value=0.081 Score=53.55 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=23.2
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 181 EEGILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 181 ~~~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.....+|+|.|+.|.|||||++.+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999999876
No 364
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.32 Score=52.45 Aligned_cols=154 Identities=11% Similarity=0.080 Sum_probs=77.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEE-EEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCcc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMW-VSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKR 263 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~w-v~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 263 (849)
|--.++|+||.|||++..++++. .+.-++ +.++...+-.+ ++.++.. ...+
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~------L~ydIydLeLt~v~~n~d-Lr~LL~~---------------------t~~k 287 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANY------LNYDIYDLELTEVKLDSD-LRHLLLA---------------------TPNK 287 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhh------cCCceEEeeeccccCcHH-HHHHHHh---------------------CCCC
Confidence 45678999999999999999883 222222 22222211111 2222211 2356
Q ss_pred EEEEEcCCCccC------H------------HHHHHHHhcCC---CCC-Cce-EEEEecchhhhhhc--c-ccccccccC
Q 003086 264 YLIVMDDVWGED------L------------AWWRRIYEGLP---KGK-GSS-IIITTRNGKVSQKM--G-VKKARMHFP 317 (849)
Q Consensus 264 ~LlVlDdv~~~~------~------------~~~~~l~~~l~---~~~-~s~-ilvTtr~~~v~~~~--~-~~~~~~~~l 317 (849)
-+||+.|++..- . ..+.-|+.++. ... +=| |++||...+-.... . ..-...+.+
T Consensus 288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~m 367 (457)
T KOG0743|consen 288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYM 367 (457)
T ss_pred cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEc
Confidence 777888875410 0 01112222221 111 234 56777664432211 1 111156778
Q ss_pred CCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhH-HHHHhhhhhcC
Q 003086 318 KFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLA-IKAVGGMMLYK 374 (849)
Q Consensus 318 ~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLa-i~~~~~~l~~~ 374 (849)
.-=+.+....|+.++..... ...+..+|.+...|.-+. +.+.+.+|.++
T Consensus 368 gyCtf~~fK~La~nYL~~~~--------~h~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 368 GYCTFEAFKTLASNYLGIEE--------DHRLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred CCCCHHHHHHHHHHhcCCCC--------CcchhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 88889999999998873321 133444555544444443 33344555554
No 365
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.26 E-value=0.0013 Score=65.05 Aligned_cols=63 Identities=22% Similarity=0.169 Sum_probs=33.6
Q ss_pred hcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCc--cccCCCCCcEEeeccccCC
Q 003086 554 FSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPP--SLKKLKNLQILDVSYCQNL 622 (849)
Q Consensus 554 ~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~--~i~~L~~L~~L~L~~~~~~ 622 (849)
..+|+.|+||.|+-|.|. -...+..+++|+.|.|+.| .|..+-+ -+.++++|++|-|..|+..
T Consensus 37 c~kMp~lEVLsLSvNkIs-----sL~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKIS-----SLAPLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWLDENPCC 101 (388)
T ss_pred HHhcccceeEEeeccccc-----cchhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhhccCCcc
Confidence 355666666666666654 2244556666666666666 4444432 1245555555555544433
No 366
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.25 E-value=0.013 Score=46.38 Aligned_cols=21 Identities=38% Similarity=0.623 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003086 186 AIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~ 206 (849)
+|+|.|.+|+||||+|+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 367
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.24 E-value=0.1 Score=51.61 Aligned_cols=119 Identities=23% Similarity=0.239 Sum_probs=60.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCh--h-hhc--cc--------------Cc-eEEEEeCCccCHHHHHHHHHHHhcCCC
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDR--E-IEN--WF--------------ER-RMWVSVSQTFTEEQIMRSMLRNLGDAS 243 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~--~-~~~--~f--------------~~-~~wv~~s~~~~~~~~~~~i~~~l~~~~ 243 (849)
-.+++|+|..|.|||||.+.+.... . ..+ .| .. +.++.-....-......+++....
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~~--- 102 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYVN--- 102 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhcc---
Confidence 3589999999999999999987641 0 000 00 01 222211111000111112221111
Q ss_pred CCCCHH-HHHHHHHHHhcCccEEEEEcCCCc-cCHHHHHHHHhcCCC--CCCceEEEEecchhhhh
Q 003086 244 AGDDRG-ELLRKINQYLLGKRYLIVMDDVWG-EDLAWWRRIYEGLPK--GKGSSIIITTRNGKVSQ 305 (849)
Q Consensus 244 ~~~~~~-~~~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~--~~~s~ilvTtr~~~v~~ 305 (849)
..-+.. ...-.+...+..++-++++|+.-. -|....+.+...+.. ..+..||++|.+.....
T Consensus 103 ~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 103 EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 111222 222334555666778999999754 334444444444432 12677888888766554
No 368
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.21 E-value=0.06 Score=56.47 Aligned_cols=84 Identities=20% Similarity=0.185 Sum_probs=53.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCC------CCCHHHHHHHHH
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASA------GDDRGELLRKIN 256 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~ 256 (849)
.-+++-|+|+.|+||||||..+.. ..+..-..++||...+.+++. .++.++.... ++..++....+.
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHH
Confidence 356899999999999999998887 344444568899998877654 3445554422 455666666666
Q ss_pred HHhcC-ccEEEEEcCCCc
Q 003086 257 QYLLG-KRYLIVMDDVWG 273 (849)
Q Consensus 257 ~~l~~-~~~LlVlDdv~~ 273 (849)
..++. ..-++|+|-|-.
T Consensus 125 ~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHTTSESEEEEE-CTT
T ss_pred HHhhcccccEEEEecCcc
Confidence 66643 445889998844
No 369
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.18 E-value=0.042 Score=52.81 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003086 186 AIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
.|.|.|.+|.||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 370
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.18 E-value=0.12 Score=57.63 Aligned_cols=113 Identities=20% Similarity=0.258 Sum_probs=69.2
Q ss_pred eEEEEEEcCCCCcHHH-HHHHHhcChhhhcccCceEEEEeCCccCH--HHHHHHHHHHhcCCCC--------------CC
Q 003086 184 ILAIGVVGMGGLGKTT-IAQKVFNDREIENWFERRMWVSVSQTFTE--EQIMRSMLRNLGDASA--------------GD 246 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTt-La~~v~~~~~~~~~f~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~--------------~~ 246 (849)
..||.|+|..|.|||| ||+.+|.+ .|...--|-+.++-.+ -.+.+.+.+.++.... .+
T Consensus 371 n~vvvivgETGSGKTTQl~QyL~ed-----GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~ 445 (1042)
T KOG0924|consen 371 NQVVVIVGETGSGKTTQLAQYLYED-----GYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSED 445 (1042)
T ss_pred CcEEEEEecCCCCchhhhHHHHHhc-----ccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCc
Confidence 4699999999999988 66666664 2322224455555443 3466777777754321 00
Q ss_pred -------CHHHHHHHHHHHhcCccEEEEEcCCCcc---CHHHHHHHHhcCCCCCCceEEEEecch
Q 003086 247 -------DRGELLRKINQYLLGKRYLIVMDDVWGE---DLAWWRRIYEGLPKGKGSSIIITTRNG 301 (849)
Q Consensus 247 -------~~~~~~~~l~~~l~~~~~LlVlDdv~~~---~~~~~~~l~~~l~~~~~s~ilvTtr~~ 301 (849)
+---+.+.|.+..-.|-..||+|.+.+- ..-.+..++..+.....-|+||||-..
T Consensus 446 T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm 510 (1042)
T KOG0924|consen 446 TKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATM 510 (1042)
T ss_pred eeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccc
Confidence 2222344445544556779999999762 223344555555555588999999763
No 371
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.18 E-value=0.33 Score=50.26 Aligned_cols=130 Identities=8% Similarity=-0.092 Sum_probs=71.9
Q ss_pred HHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChh------------hhcccCceEEEEeCCccCHHHHHHHHHH
Q 003086 170 TRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDRE------------IENWFERRMWVSVSQTFTEEQIMRSMLR 237 (849)
Q Consensus 170 ~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~------------~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 237 (849)
-+++...+..+. -.....++|+.|+||+++|..+...-- ...|-| ..|+.-....
T Consensus 6 ~~~L~~~i~~~r-l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD-~~~i~p~~~~----------- 72 (290)
T PRK05917 6 WEALIQRVRDQK-VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPD-IHEFSPQGKG----------- 72 (290)
T ss_pred HHHHHHHHHcCC-cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCC-EEEEecCCCC-----------
Confidence 345555555532 345677999999999999988754210 001111 1122100000
Q ss_pred HhcCCCCCCCHHHHHHHHHHHh-----cCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEecc-hhhhhhcccc
Q 003086 238 NLGDASAGDDRGELLRKINQYL-----LGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITTRN-GKVSQKMGVK 310 (849)
Q Consensus 238 ~l~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTtr~-~~v~~~~~~~ 310 (849)
..-..++.. .+.+.+ .++.-++|+|+++..+.+.+..+...+..-+ ++.+|++|.+ ..+.....+.
T Consensus 73 ------~~I~idqiR-~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SR 145 (290)
T PRK05917 73 ------RLHSIETPR-AIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSR 145 (290)
T ss_pred ------CcCcHHHHH-HHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhc
Confidence 001223322 233332 3556699999999888899999999997765 6665555544 5554443332
Q ss_pred ccccccCCCC
Q 003086 311 KARMHFPKFL 320 (849)
Q Consensus 311 ~~~~~~l~~L 320 (849)
. ..+.+.++
T Consensus 146 c-q~~~~~~~ 154 (290)
T PRK05917 146 S-LSIHIPME 154 (290)
T ss_pred c-eEEEccch
Confidence 2 45555554
No 372
>PRK13949 shikimate kinase; Provisional
Probab=95.17 E-value=0.13 Score=49.11 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003086 186 AIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
.|.|+|++|.||||+++.+...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998873
No 373
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.16 E-value=0.043 Score=59.11 Aligned_cols=47 Identities=23% Similarity=0.313 Sum_probs=35.4
Q ss_pred CccccccccHHHHHHHHhcc------------CCCeEEEEEEcCCCCcHHHHHHHHhcC
Q 003086 161 TLVVGLEGDTRKIKDWLFEA------------EEGILAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
..++|.++.++.+.-.+... +...+.|.++|++|+|||++|+.+...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35788888888876555431 113467899999999999999999873
No 374
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.15 E-value=0.1 Score=61.27 Aligned_cols=94 Identities=17% Similarity=0.170 Sum_probs=62.7
Q ss_pred HHHHHHh-ccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCC------
Q 003086 172 KIKDWLF-EAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASA------ 244 (849)
Q Consensus 172 ~l~~~L~-~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------ 244 (849)
.+-.+|- .+=+.-+++-|+|.+|+||||||..++.. ....=..++|+...+.+++. .+++++....
T Consensus 47 ~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~ 119 (790)
T PRK09519 47 ALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQ 119 (790)
T ss_pred HHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEec
Confidence 3334443 23234678899999999999999887653 22233567999888777743 6677766532
Q ss_pred CCCHHHHHHHHHHHhc-CccEEEEEcCCC
Q 003086 245 GDDRGELLRKINQYLL-GKRYLIVMDDVW 272 (849)
Q Consensus 245 ~~~~~~~~~~l~~~l~-~~~~LlVlDdv~ 272 (849)
..+.+.....+...+. ++.-+||+|.+-
T Consensus 120 ~~~~E~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 120 PDTGEQALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred CCCHHHHHHHHHHHhhcCCCeEEEEcchh
Confidence 3455666666666554 456799999985
No 375
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.15 E-value=0.015 Score=51.44 Aligned_cols=98 Identities=17% Similarity=0.282 Sum_probs=47.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcC--ccE
Q 003086 187 IGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLG--KRY 264 (849)
Q Consensus 187 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~--~~~ 264 (849)
|.|+|.+|+||||+|+.+.. .....|.. |.+..+..+.+++..- +..... ... ++..+ -.-
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~R---Iq~tpdllPsDi~G~~---v~~~~~-~~f--------~~~~GPif~~ 64 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFKR---IQFTPDLLPSDILGFP---VYDQET-GEF--------EFRPGPIFTN 64 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EEE---EE--TT--HHHHHEEE---EEETTT-TEE--------EEEE-TT-SS
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCceeE---EEecCCCCcccceeee---eeccCC-Cee--------EeecChhhhc
Confidence 67999999999999999987 45566643 2333344444443220 000000 000 00001 123
Q ss_pred EEEEcCCCccCHHHHHHHHhcCCCCC-----------CceEEEEecch
Q 003086 265 LIVMDDVWGEDLAWWRRIYEGLPKGK-----------GSSIIITTRNG 301 (849)
Q Consensus 265 LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~s~ilvTtr~~ 301 (849)
++++|++....+.....+.+.+.+.. ..-.+|.|++.
T Consensus 65 ill~DEiNrappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp 112 (131)
T PF07726_consen 65 ILLADEINRAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNP 112 (131)
T ss_dssp EEEEETGGGS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-T
T ss_pred eeeecccccCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCc
Confidence 89999998876666666666554321 23467778764
No 376
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.13 E-value=0.11 Score=55.30 Aligned_cols=101 Identities=15% Similarity=0.040 Sum_probs=59.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCcc-CHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhc
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTF-TEEQIMRSMLRNLGDASA-GDDRGELLRKINQYLL 260 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~-~~~~~~~~~~l~~~l~ 260 (849)
+.++++|+|+.|+||||++..+... ....-..+.+|++.... ...+-++...+.++.+.. ..+..++...+...-.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 4679999999999999999998763 22222346677665332 234455556666654432 3455566555544321
Q ss_pred -CccEEEEEcCCCc--cCHHHHHHHHhc
Q 003086 261 -GKRYLIVMDDVWG--EDLAWWRRIYEG 285 (849)
Q Consensus 261 -~~~~LlVlDdv~~--~~~~~~~~l~~~ 285 (849)
+..=+|++|-.-. .+....+.+...
T Consensus 283 ~~~~D~VLIDTAGr~~~d~~~l~EL~~l 310 (407)
T PRK12726 283 VNCVDHILIDTVGRNYLAEESVSEISAY 310 (407)
T ss_pred cCCCCEEEEECCCCCccCHHHHHHHHHH
Confidence 3456888898754 223444444443
No 377
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.11 E-value=0.14 Score=57.15 Aligned_cols=94 Identities=21% Similarity=0.208 Sum_probs=52.8
Q ss_pred HHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCC------
Q 003086 171 RKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASA------ 244 (849)
Q Consensus 171 ~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------ 244 (849)
..+-+.|..+=..-.++.|.|.+|+|||||+..+... ....-..++|++..+. ..++... ++.++....
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~ 141 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLA 141 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeC
Confidence 3344444433223569999999999999999998774 2222245788876543 3444332 445543211
Q ss_pred CCCHHHHHHHHHHHhcCccEEEEEcCCC
Q 003086 245 GDDRGELLRKINQYLLGKRYLIVMDDVW 272 (849)
Q Consensus 245 ~~~~~~~~~~l~~~l~~~~~LlVlDdv~ 272 (849)
..+.+.+.+.+.+ .+.-++|+|.+.
T Consensus 142 e~~l~~i~~~i~~---~~~~lVVIDSIq 166 (446)
T PRK11823 142 ETNLEAILATIEE---EKPDLVVIDSIQ 166 (446)
T ss_pred CCCHHHHHHHHHh---hCCCEEEEechh
Confidence 2234444333322 344577777764
No 378
>PRK06547 hypothetical protein; Provisional
Probab=95.09 E-value=0.029 Score=53.71 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcC
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
...+|+|.|++|.||||+|+.+...
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999763
No 379
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.08 E-value=0.16 Score=51.46 Aligned_cols=124 Identities=19% Similarity=0.239 Sum_probs=66.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhh------------h----ccc-CceEEEEeC----------------C------
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREI------------E----NWF-ERRMWVSVS----------------Q------ 224 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~------------~----~~f-~~~~wv~~s----------------~------ 224 (849)
-.+++|+|+.|+|||||.+.++.--.. . ..+ ..+++|.=+ +
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~ 107 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGL 107 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCccccc
Confidence 468999999999999999999761000 0 000 012222111 0
Q ss_pred ----ccCHHHHHHHHHHHhcCCCC------CCCHHHHH-HHHHHHhcCccEEEEEcCCCc-cCHHHHHHHHhcC---CCC
Q 003086 225 ----TFTEEQIMRSMLRNLGDASA------GDDRGELL-RKINQYLLGKRYLIVMDDVWG-EDLAWWRRIYEGL---PKG 289 (849)
Q Consensus 225 ----~~~~~~~~~~i~~~l~~~~~------~~~~~~~~-~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l---~~~ 289 (849)
...-.++..+.++.++...- .-+-.+.+ ..+...|..+.=+++||+--+ -|....-++...+ ...
T Consensus 108 ~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~ 187 (258)
T COG1120 108 FGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE 187 (258)
T ss_pred ccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHh
Confidence 01122245555565554321 22333333 345566777778999998533 1222222333333 233
Q ss_pred CCceEEEEecchhhhhhc
Q 003086 290 KGSSIIITTRNGKVSQKM 307 (849)
Q Consensus 290 ~~s~ilvTtr~~~v~~~~ 307 (849)
.|..||+++.+-..|...
T Consensus 188 ~~~tvv~vlHDlN~A~ry 205 (258)
T COG1120 188 KGLTVVMVLHDLNLAARY 205 (258)
T ss_pred cCCEEEEEecCHHHHHHh
Confidence 478899999987665543
No 380
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.06 E-value=0.18 Score=48.14 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
+.|.+.|.+|+||||+|+++..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 4678899999999999999977
No 381
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.04 E-value=0.11 Score=51.61 Aligned_cols=25 Identities=44% Similarity=0.537 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcC
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
...+|.++||+|.||||..+.++.+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHH
Confidence 4668889999999999999999875
No 382
>PRK08233 hypothetical protein; Provisional
Probab=95.03 E-value=0.019 Score=55.82 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
..+|+|.|.+|+||||||+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999998763
No 383
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.03 E-value=0.068 Score=59.48 Aligned_cols=88 Identities=24% Similarity=0.206 Sum_probs=47.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCc-cCHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhcC
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQT-FTEEQIMRSMLRNLGDASA-GDDRGELLRKINQYLLG 261 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~l~~~l~~ 261 (849)
..+|+|+|.+|+||||++.++......+.....+..++.... ....+.+......++.... ..+...+...+.+ +.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~-l~- 427 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER-LR- 427 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH-hc-
Confidence 479999999999999999888763111111233555554321 1122233333333333222 2234445544443 33
Q ss_pred ccEEEEEcCCCc
Q 003086 262 KRYLIVMDDVWG 273 (849)
Q Consensus 262 ~~~LlVlDdv~~ 273 (849)
..=+|++|..-.
T Consensus 428 ~~DLVLIDTaG~ 439 (559)
T PRK12727 428 DYKLVLIDTAGM 439 (559)
T ss_pred cCCEEEecCCCc
Confidence 345888998853
No 384
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=95.03 E-value=0.046 Score=62.25 Aligned_cols=132 Identities=13% Similarity=0.148 Sum_probs=73.5
Q ss_pred ccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcC
Q 003086 162 LVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGD 241 (849)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 241 (849)
.++|....+.++.+.+..-......|.|+|.+|+|||++|+.+...... .-...+-++++.- +...+-..+...-.+
T Consensus 139 ~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~--~~~~~i~i~c~~~-~~~~~~~~lfg~~~g 215 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPR--AKAPFIALNMAAI-PKDLIESELFGHEKG 215 (469)
T ss_pred cceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCC--CCCCeEeeeCCCC-CHHHHHHHhcCCCCC
Confidence 5889988888888777553333456889999999999999999774211 1122344555433 222222222111111
Q ss_pred CCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCCC------------CceEEEEecc
Q 003086 242 ASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK------------GSSIIITTRN 300 (849)
Q Consensus 242 ~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------~s~ilvTtr~ 300 (849)
...+.... ....+. ....=-|+||++..........+...+..+. ..+||+||..
T Consensus 216 ~~~~~~~~-~~g~~~---~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~ 282 (469)
T PRK10923 216 AFTGANTI-RQGRFE---QADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQ 282 (469)
T ss_pred CCCCCCcC-CCCCee---ECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCC
Confidence 11110000 000000 1112257889998877777888888775432 2378888864
No 385
>PTZ00301 uridine kinase; Provisional
Probab=95.02 E-value=0.033 Score=55.11 Aligned_cols=23 Identities=26% Similarity=0.621 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..+|+|.|.+|.||||||+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999998876
No 386
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.01 E-value=0.12 Score=48.83 Aligned_cols=114 Identities=16% Similarity=0.065 Sum_probs=59.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceE---EEEeCCccCHHHHHHHHHHHhc-----CCC--CCCC------
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRM---WVSVSQTFTEEQIMRSMLRNLG-----DAS--AGDD------ 247 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~---wv~~s~~~~~~~~~~~i~~~l~-----~~~--~~~~------ 247 (849)
...|-|++..|.||||.|-.+.-.. ....+ .+. |+.-........++... .+. ... ...+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra-~~~g~-~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~ 80 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRA-LGHGK-KVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTA 80 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHH-HHCCC-eEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHH
Confidence 3578888889999999997775521 22222 222 33333223333344332 111 100 0011
Q ss_pred -HHHHHHHHHHHhc-CccEEEEEcCCCc---cCHHHHHHHHhcCCCCC-CceEEEEecch
Q 003086 248 -RGELLRKINQYLL-GKRYLIVMDDVWG---EDLAWWRRIYEGLPKGK-GSSIIITTRNG 301 (849)
Q Consensus 248 -~~~~~~~l~~~l~-~~~~LlVlDdv~~---~~~~~~~~l~~~l~~~~-~s~ilvTtr~~ 301 (849)
..+..+..++.+. +.-=+||||.+-. ...-..+.+...+...+ +..||+|-|+.
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 1122233344443 4455999999843 11222345666666555 78999999974
No 387
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.00 E-value=0.18 Score=50.52 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003086 186 AIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.|.|+|++|+||||+|+.+..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999875
No 388
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.98 E-value=0.19 Score=46.99 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003086 186 AIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~ 206 (849)
+|.|+|.+|.||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999876
No 389
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.98 E-value=0.1 Score=57.21 Aligned_cols=87 Identities=15% Similarity=0.184 Sum_probs=49.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCC-----C-CCCHH------HH
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDAS-----A-GDDRG------EL 251 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~-~~~~~------~~ 251 (849)
-..++|+|..|+|||||++.+..... ....+++..-....++.++....+....... . .++.. ..
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 35789999999999999998876321 1223444433334455555554444332111 1 11111 11
Q ss_pred HHHHHHHh--cCccEEEEEcCCCc
Q 003086 252 LRKINQYL--LGKRYLIVMDDVWG 273 (849)
Q Consensus 252 ~~~l~~~l--~~~~~LlVlDdv~~ 273 (849)
.-.+.+++ +++.+|+++||+-.
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchHH
Confidence 22233443 58999999999954
No 390
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.98 E-value=0.017 Score=56.78 Aligned_cols=21 Identities=43% Similarity=0.738 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003086 186 AIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~ 206 (849)
||+|.|.+|+||||+|+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999977
No 391
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.96 E-value=0.02 Score=57.08 Aligned_cols=24 Identities=38% Similarity=0.692 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
+..+|+|.|.+|+||||||+.+..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 392
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.96 E-value=0.035 Score=55.47 Aligned_cols=39 Identities=23% Similarity=0.479 Sum_probs=29.8
Q ss_pred cHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcC
Q 003086 169 DTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 169 ~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
+...+++.+.....+..+|+|.|+||+||+||.-.+...
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~ 52 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRE 52 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHH
Confidence 455677777665556789999999999999999888764
No 393
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.93 E-value=0.029 Score=50.61 Aligned_cols=39 Identities=21% Similarity=0.141 Sum_probs=27.5
Q ss_pred cHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcC
Q 003086 169 DTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 169 ~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
+.+++-+.|...-....+|.+.|.-|.||||+++.+.+.
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 344444444432122458999999999999999999874
No 394
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.082 Score=60.08 Aligned_cols=94 Identities=21% Similarity=0.206 Sum_probs=64.0
Q ss_pred CccccccccHHHHHHHHhcc---------C-CCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEA---------E-EGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQ 230 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~---------~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 230 (849)
+++=|.++-+..|.+-+.-+ + ....=|.++|++|.|||-||+.|+.+. . ..|++|-.+ +
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc--s-----L~FlSVKGP----E 740 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC--S-----LNFLSVKGP----E 740 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc--e-----eeEEeecCH----H
Confidence 46778888888887765432 1 124568899999999999999998741 1 346666544 1
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCc
Q 003086 231 IMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWG 273 (849)
Q Consensus 231 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~ 273 (849)
+ +..- -+.+++.+.+.+.+.-.-++++|+||++++
T Consensus 741 L----LNMY----VGqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 741 L----LNMY----VGQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred H----HHHH----hcchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 1 1111 134556666666666667999999999865
No 395
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.89 E-value=0.029 Score=51.28 Aligned_cols=44 Identities=32% Similarity=0.491 Sum_probs=32.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCC
Q 003086 186 AIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDA 242 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 242 (849)
+|.|-|++|.||||+|+.+.++-.. -.| +.-.++++|++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl-------~~v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL-------KLV------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC-------cee------eccHHHHHHHHHcCCC
Confidence 6899999999999999999874211 112 2347888999888765
No 396
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=0.04 Score=54.25 Aligned_cols=92 Identities=20% Similarity=0.265 Sum_probs=56.0
Q ss_pred CccccccccHHHHHHHHhcc----C-------CCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEA----E-------EGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEE 229 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~----~-------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 229 (849)
.++-|-.+.++++.+.+..+ + +.++-|.++|++|.|||-+|+.|.| +....| +-|-
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacf-----irvi------ 243 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACF-----IRVI------ 243 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceE-----Eeeh------
Confidence 45667778888887765432 1 2456788999999999999999999 444433 2221
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcC-ccEEEEEcCCC
Q 003086 230 QIMRSMLRNLGDASAGDDRGELLRKINQYLLG-KRYLIVMDDVW 272 (849)
Q Consensus 230 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~ 272 (849)
-.++.+..-+ +-......+.+.-+. |-++|+||.++
T Consensus 244 --gselvqkyvg-----egarmvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 244 --GSELVQKYVG-----EGARMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred --hHHHHHHHhh-----hhHHHHHHHHHHhcccceEEEEeeccc
Confidence 1122221111 223444455554444 55889999873
No 397
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.84 E-value=0.25 Score=49.42 Aligned_cols=24 Identities=33% Similarity=0.236 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
-.+++|+|..|.|||||++.+...
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 358999999999999999999763
No 398
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.82 E-value=0.0029 Score=72.37 Aligned_cols=89 Identities=24% Similarity=0.243 Sum_probs=41.5
Q ss_pred cCCCcceEEecCCccccccccccccccCCCCccceEeccCC-CCCcccC----ccccCCCCCcEEeeccccCCc-cCChh
Q 003086 555 SECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNT-HPLIHLP----PSLKKLKNLQILDVSYCQNLK-MLPSY 628 (849)
Q Consensus 555 ~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~-~~~~~lp----~~i~~L~~L~~L~L~~~~~~~-~lp~~ 628 (849)
..+++|+.|.+.++.-... ..+-.....+++|+.|+++++ ..+...| .....+.+|+.|+++++..+. ..-..
T Consensus 185 ~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITD-DSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred hhCchhhHhhhcccccCCh-hhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 3467777777776642210 002233455677777777652 1111111 122345666666666555322 11122
Q ss_pred hh-cccCCcEeeccCCC
Q 003086 629 VQ-SFIQLRALDVTHCG 644 (849)
Q Consensus 629 i~-~l~~L~~L~l~~~~ 644 (849)
+. .+++|++|.+.+|.
T Consensus 264 l~~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCS 280 (482)
T ss_pred HHhhCCCcceEccCCCC
Confidence 22 24555555554443
No 399
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.82 E-value=0.025 Score=56.24 Aligned_cols=24 Identities=42% Similarity=0.679 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
...+|+|+|++|+||||||+.+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999976
No 400
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.82 E-value=0.044 Score=54.13 Aligned_cols=119 Identities=18% Similarity=0.148 Sum_probs=59.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCC-CCC---HHHHHHHHHHHh
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASA-GDD---RGELLRKINQYL 259 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-~~~---~~~~~~~l~~~l 259 (849)
.+++.|.|+.|.||||+.+.+.-.. +-.+. -.+|.+.. .. -.+...|...++.... ... ...-...+...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la~~--G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMAQI--GCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHHc--CCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 3789999999999999999886421 11111 11221111 00 0222333333332211 111 111111222222
Q ss_pred --cCccEEEEEcCCCcc-CHHH----HHHHHhcCCCCCCceEEEEecchhhhhhcc
Q 003086 260 --LGKRYLIVMDDVWGE-DLAW----WRRIYEGLPKGKGSSIIITTRNGKVSQKMG 308 (849)
Q Consensus 260 --~~~~~LlVlDdv~~~-~~~~----~~~l~~~l~~~~~s~ilvTtr~~~v~~~~~ 308 (849)
..++-|+++|+.... +..+ ...+...+.. .+..+|+||...+++..+.
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~-~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLIK-KESTVFFATHFRDIAAILG 158 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChHHHHHHhh
Confidence 356789999998431 1222 1122333322 2889999999988877654
No 401
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.80 E-value=0.07 Score=52.86 Aligned_cols=94 Identities=18% Similarity=0.313 Sum_probs=55.4
Q ss_pred HHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCc-cCHHHHHHHHHHHhcCC-------CC
Q 003086 173 IKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQT-FTEEQIMRSMLRNLGDA-------SA 244 (849)
Q Consensus 173 l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~-------~~ 244 (849)
.++.|..-..+ ..++|.|.+|+|||+|+..+.+.. .-+.++++.+.+. ..+.++.+++...-..+ ..
T Consensus 5 ~ID~l~Pig~G-qr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~ 79 (215)
T PF00006_consen 5 AIDLLFPIGRG-QRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATS 79 (215)
T ss_dssp HHHHHSCEETT-SEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEET
T ss_pred eeccccccccC-CEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccc
Confidence 44555432212 357899999999999999998742 2234578878754 45566666664431111 11
Q ss_pred CCCHH----------HHHHHHHHHhcCccEEEEEcCCCc
Q 003086 245 GDDRG----------ELLRKINQYLLGKRYLIVMDDVWG 273 (849)
Q Consensus 245 ~~~~~----------~~~~~l~~~l~~~~~LlVlDdv~~ 273 (849)
.+... ...+.+++ +++.+|+++||+-.
T Consensus 80 ~~~~~~r~~~~~~a~t~AEyfrd--~G~dVlli~Dsltr 116 (215)
T PF00006_consen 80 DEPPAARYRAPYTALTIAEYFRD--QGKDVLLIIDSLTR 116 (215)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHH--TTSEEEEEEETHHH
T ss_pred hhhHHHHhhhhccchhhhHHHhh--cCCceeehhhhhHH
Confidence 11111 12223333 68999999999844
No 402
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.80 E-value=0.044 Score=50.96 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=26.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEE
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVS 221 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 221 (849)
..+|-|.|.+|.||||||+.+.. +....-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 36899999999999999999987 4444444455554
No 403
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.79 E-value=0.047 Score=54.54 Aligned_cols=119 Identities=16% Similarity=0.081 Sum_probs=60.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCC----CCCHHHHHHHHHHHh
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASA----GDDRGELLRKINQYL 259 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~l~~~l 259 (849)
.+++.|.|+.|.||||+.+.+.-. .+..+-.+.+|-.-..- ..+.+|...++.... ......-..++...+
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~-~~la~~G~~v~a~~~~~----~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il 105 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALI-TIMAQIGSFVPASSATL----SIFDSVLTRMGASDSIQHGMSTFMVELSETSHIL 105 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH-HHHHhCCCEEEcCceEE----eccceEEEEecCccccccccchHHHHHHHHHHHH
Confidence 468899999999999999988652 11111222222210000 001111111111111 112222223333333
Q ss_pred --cCccEEEEEcCCCcc----CHHH-HHHHHhcCCCCCCceEEEEecchhhhhhc
Q 003086 260 --LGKRYLIVMDDVWGE----DLAW-WRRIYEGLPKGKGSSIIITTRNGKVSQKM 307 (849)
Q Consensus 260 --~~~~~LlVlDdv~~~----~~~~-~~~l~~~l~~~~~s~ilvTtr~~~v~~~~ 307 (849)
.+++.|++||+.-.. +... -..+...+....++.+|++|...+++...
T Consensus 106 ~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 106 SNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHHH
Confidence 357899999997431 1111 12334444444578999999998876654
No 404
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.77 E-value=0.1 Score=50.71 Aligned_cols=50 Identities=12% Similarity=0.254 Sum_probs=31.5
Q ss_pred HHHHhcCccEEEEEcCCCc-cCHHHHHHHHhcCCC--CCCceEEEEecchhhh
Q 003086 255 INQYLLGKRYLIVMDDVWG-EDLAWWRRIYEGLPK--GKGSSIIITTRNGKVS 304 (849)
Q Consensus 255 l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~--~~~s~ilvTtr~~~v~ 304 (849)
+...+-.++-++++|+--. -|....+.+...+.. ..+..||++|.+....
T Consensus 115 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 167 (182)
T cd03215 115 LARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDEL 167 (182)
T ss_pred HHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 4555666778999999744 345555555554432 2367888888875433
No 405
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.76 E-value=0.027 Score=56.58 Aligned_cols=20 Identities=35% Similarity=0.489 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 003086 187 IGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 187 i~I~G~~GiGKTtLa~~v~~ 206 (849)
|.|+|++|+||||+|+.+.+
T Consensus 9 Ivl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999876
No 406
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.74 E-value=0.016 Score=50.61 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 003086 187 IGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 187 i~I~G~~GiGKTtLa~~v~~~ 207 (849)
|-|+|.+|+|||+||+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998774
No 407
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.72 E-value=0.055 Score=58.36 Aligned_cols=46 Identities=26% Similarity=0.357 Sum_probs=36.2
Q ss_pred CccccccccHHHHHHHHhcc------------CCCeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 161 TLVVGLEGDTRKIKDWLFEA------------EEGILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..++|.++.++.+..++... +.....|.++|++|+|||+||+.+..
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk 72 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK 72 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 45889999988888777441 11246789999999999999999977
No 408
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.72 E-value=0.034 Score=55.11 Aligned_cols=22 Identities=18% Similarity=0.051 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+++|+|+.|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999974
No 409
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=94.72 E-value=0.15 Score=60.49 Aligned_cols=127 Identities=17% Similarity=0.254 Sum_probs=77.5
Q ss_pred ccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCC---
Q 003086 168 GDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASA--- 244 (849)
Q Consensus 168 ~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~--- 244 (849)
..+.+|.+.+... .|+.|+|..|.||||-.-+++.+.-. .....+-++=........+...+++.++.+..
T Consensus 53 ~~~~~i~~ai~~~----~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~V 126 (845)
T COG1643 53 AVRDEILKAIEQN----QVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETV 126 (845)
T ss_pred HHHHHHHHHHHhC----CEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCcee
Confidence 4567777777764 59999999999999999887764221 11223333222334566788889999887521
Q ss_pred -----------C------CCHHHHHHHHH-HHhcCccEEEEEcCCCccCH---HHHHHHHhcCCCCC-CceEEEEecc
Q 003086 245 -----------G------DDRGELLRKIN-QYLLGKRYLIVMDDVWGEDL---AWWRRIYEGLPKGK-GSSIIITTRN 300 (849)
Q Consensus 245 -----------~------~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~~~---~~~~~l~~~l~~~~-~s~ilvTtr~ 300 (849)
. .+...+...++ +.+-.+--.||+|.+++-.. -....++..++... .-||||+|-.
T Consensus 127 GY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSAT 204 (845)
T COG1643 127 GYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSAT 204 (845)
T ss_pred eEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecc
Confidence 0 14555555555 33344556899999987211 11222233233333 4899999965
No 410
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.72 E-value=0.15 Score=55.04 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=60.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCcc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKR 263 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 263 (849)
...|.|.|+.|.||||+.+.+... +..+....++. +.++. +-........+.....+.......+.++..|...+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~t-iEdp~--E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~p 196 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDY--INKNAAGHIIT-IEDPI--EYVHRNKRSLINQREVGLDTLSFANALRAALREDP 196 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEE-EcCCh--hhhccCccceEEccccCCCCcCHHHHHHHhhccCC
Confidence 468999999999999999988763 33333444443 22221 11100000000000011122345566777788888
Q ss_pred EEEEEcCCCccCHHHHHHHHhcCCCCCCceEEEEecchh
Q 003086 264 YLIVMDDVWGEDLAWWRRIYEGLPKGKGSSIIITTRNGK 302 (849)
Q Consensus 264 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~s~ilvTtr~~~ 302 (849)
=+|++|++.+ .+.+....... ..|-.|+.|.-..+
T Consensus 197 d~i~vgEird--~~~~~~~l~aa--~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 197 DVILIGEMRD--LETVELALTAA--ETGHLVFGTLHTNS 231 (343)
T ss_pred CEEEEeCCCC--HHHHHHHHHHH--HcCCcEEEEEcCCC
Confidence 8999999976 66555433322 22444555555433
No 411
>PRK03839 putative kinase; Provisional
Probab=94.72 E-value=0.022 Score=55.25 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003086 186 AIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999873
No 412
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.71 E-value=0.12 Score=56.59 Aligned_cols=47 Identities=23% Similarity=0.307 Sum_probs=34.9
Q ss_pred CCccccccccHHHHHHHHh-------c---cC--C----CeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 160 HTLVVGLEGDTRKIKDWLF-------E---AE--E----GILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~-------~---~~--~----~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
...++|.++.++.+...+. . .. . ....|.++|++|+|||++|+.+..
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 3468999998888865552 1 11 0 135789999999999999999975
No 413
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.70 E-value=0.19 Score=51.77 Aligned_cols=40 Identities=15% Similarity=0.268 Sum_probs=30.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCC
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQ 224 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 224 (849)
.-.++.|.|.+|+|||++|.++.... . ..=..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~-a-~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQ-A-SRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-H-hCCCcEEEEEecC
Confidence 45789999999999999999876531 1 2234678888864
No 414
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.70 E-value=0.2 Score=55.99 Aligned_cols=53 Identities=19% Similarity=0.105 Sum_probs=35.1
Q ss_pred HHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCC
Q 003086 170 TRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQ 224 (849)
Q Consensus 170 ~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 224 (849)
+..+-+.|..+=..-.++.|.|.+|+|||||+..+... ....-..++|++..+
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVSGEE 132 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEECcC
Confidence 44444545443234578999999999999999998663 222223577887654
No 415
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=94.70 E-value=0.23 Score=50.10 Aligned_cols=51 Identities=18% Similarity=0.289 Sum_probs=31.9
Q ss_pred HHHHHhcCccEEEEEcCCCc-cCHHHHHHHHhcCCC--CCCceEEEEecchhhh
Q 003086 254 KINQYLLGKRYLIVMDDVWG-EDLAWWRRIYEGLPK--GKGSSIIITTRNGKVS 304 (849)
Q Consensus 254 ~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~--~~~s~ilvTtr~~~v~ 304 (849)
.+...+-.++-++++|+--. -|....+.+...+.. ..|..||++|.+.+..
T Consensus 123 ~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~ 176 (223)
T TIGR03771 123 LVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQA 176 (223)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 34555667778999999754 344444555554432 2377888888876543
No 416
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.67 E-value=0.19 Score=58.99 Aligned_cols=51 Identities=22% Similarity=0.218 Sum_probs=31.8
Q ss_pred HHHHHhcCccEEEEEcCCCc-cCHHHHHHHHhcCCCCC--CceEEEEecchhhh
Q 003086 254 KINQYLLGKRYLIVMDDVWG-EDLAWWRRIYEGLPKGK--GSSIIITTRNGKVS 304 (849)
Q Consensus 254 ~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~~--~s~ilvTtr~~~v~ 304 (849)
.+.+.+-.++-+|+||+.-+ -|.+.-..+...+..-. .+.|+||-|...+.
T Consensus 619 alARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~ 672 (709)
T COG2274 619 ALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR 672 (709)
T ss_pred HHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhh
Confidence 35566778888999999854 23444445555554322 66777887765543
No 417
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.66 E-value=0.061 Score=56.39 Aligned_cols=106 Identities=13% Similarity=0.030 Sum_probs=56.7
Q ss_pred cccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCC
Q 003086 163 VVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDA 242 (849)
Q Consensus 163 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 242 (849)
++=..+....+...+..+ +.|.|.|.+|+||||+|+.+.. +.... .+.|.++...+..+++..-.-.+...
T Consensus 47 y~f~~~~~~~vl~~l~~~----~~ilL~G~pGtGKTtla~~lA~--~l~~~---~~rV~~~~~l~~~DliG~~~~~l~~g 117 (327)
T TIGR01650 47 YLFDKATTKAICAGFAYD----RRVMVQGYHGTGKSTHIEQIAA--RLNWP---CVRVNLDSHVSRIDLVGKDAIVLKDG 117 (327)
T ss_pred ccCCHHHHHHHHHHHhcC----CcEEEEeCCCChHHHHHHHHHH--HHCCC---eEEEEecCCCChhhcCCCceeeccCC
Confidence 333334455666666543 3689999999999999999987 23322 34566666655544443311111000
Q ss_pred CCCCCHHHHHH-HHHHHhcCccEEEEEcCCCccCHHHHHH
Q 003086 243 SAGDDRGELLR-KINQYLLGKRYLIVMDDVWGEDLAWWRR 281 (849)
Q Consensus 243 ~~~~~~~~~~~-~l~~~l~~~~~LlVlDdv~~~~~~~~~~ 281 (849)
........ .+-.. ..+...+++|++....++....
T Consensus 118 ---~~~~~f~~GpL~~A-~~~g~illlDEin~a~p~~~~~ 153 (327)
T TIGR01650 118 ---KQITEFRDGILPWA-LQHNVALCFDEYDAGRPDVMFV 153 (327)
T ss_pred ---cceeEEecCcchhH-HhCCeEEEechhhccCHHHHHH
Confidence 00000000 01011 1345789999998755555444
No 418
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.66 E-value=0.045 Score=49.16 Aligned_cols=105 Identities=15% Similarity=0.225 Sum_probs=56.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCcc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKR 263 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 263 (849)
.+-|.|.|.||+||||+|..+... . ..-|+++|+-.--..+....=+... ..--+.+.+.+.|...+.+-.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~--~-----~~~~i~isd~vkEn~l~~gyDE~y~--c~i~DEdkv~D~Le~~m~~Gg 77 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEK--T-----GLEYIEISDLVKENNLYEGYDEEYK--CHILDEDKVLDELEPLMIEGG 77 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHH--h-----CCceEehhhHHhhhcchhccccccc--CccccHHHHHHHHHHHHhcCC
Confidence 346889999999999999998752 1 2357777643222222211111110 112366677777766664432
Q ss_pred EEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEecchhhhhhccc
Q 003086 264 YLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITTRNGKVSQKMGV 309 (849)
Q Consensus 264 ~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTtr~~~v~~~~~~ 309 (849)
++ +|= . -...||..- .--+++||-+..+...+..
T Consensus 78 ~I--VDy-H---------gCd~FperwfdlVvVLr~~~s~LY~RL~s 112 (176)
T KOG3347|consen 78 NI--VDY-H---------GCDFFPERWFDLVVVLRTPNSVLYDRLKS 112 (176)
T ss_pred cE--Eee-c---------ccCccchhheeEEEEEecCchHHHHHHHH
Confidence 22 221 1 112344333 4457778877776666554
No 419
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=94.65 E-value=0.068 Score=60.39 Aligned_cols=128 Identities=16% Similarity=0.179 Sum_probs=72.0
Q ss_pred ccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhccc-CceEEEEeCCccCHHHHHHHHHHHhc
Q 003086 162 LVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWF-ERRMWVSVSQTFTEEQIMRSMLRNLG 240 (849)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~ 240 (849)
.++|....++++.+.+..-......|.|.|..|+||+++|+.+.... .+. ...+.|+++.-. ...+...+ ++
T Consensus 140 ~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s---~~~~~~~v~v~c~~~~--~~~~~~~l--fg 212 (445)
T TIGR02915 140 GLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLS---DRKDKRFVAINCAAIP--ENLLESEL--FG 212 (445)
T ss_pred ceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhC---CcCCCCeEEEECCCCC--hHHHHHHh--cC
Confidence 57888888888877776432223446699999999999999997631 111 123455555432 22222221 11
Q ss_pred CCC---CCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCCC------------CceEEEEecc
Q 003086 241 DAS---AGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK------------GSSIIITTRN 300 (849)
Q Consensus 241 ~~~---~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------~s~ilvTtr~ 300 (849)
... .+.. ......+ -....=.|+||++..-.......+...+..+. ..+||.||..
T Consensus 213 ~~~~~~~~~~-~~~~g~~---~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~ 283 (445)
T TIGR02915 213 YEKGAFTGAV-KQTLGKI---EYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQ 283 (445)
T ss_pred CCCCCcCCCc-cCCCCce---eECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCC
Confidence 111 0000 0000000 01223468999998877777888877775431 3478888864
No 420
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.60 E-value=0.11 Score=52.89 Aligned_cols=89 Identities=15% Similarity=0.169 Sum_probs=55.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhh--hcccCceEEEEeCCc-cCHHHHHHHHHHHhcCCCC-------CCCH-H----
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFNDREI--ENWFERRMWVSVSQT-FTEEQIMRSMLRNLGDASA-------GDDR-G---- 249 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~~~~--~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~-------~~~~-~---- 249 (849)
.-++|.|-.|+|||+|+..+.+.... +.+-+.++++-+.+. ..+.++..++...=..... .++. .
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 45799999999999999998875321 122466788888765 3556666666553211110 1111 1
Q ss_pred -HHHHHHHHHh--c-CccEEEEEcCCCc
Q 003086 250 -ELLRKINQYL--L-GKRYLIVMDDVWG 273 (849)
Q Consensus 250 -~~~~~l~~~l--~-~~~~LlVlDdv~~ 273 (849)
...-.+.+++ + ++++|+++||+-.
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 1122344554 3 7899999999955
No 421
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.60 E-value=0.16 Score=49.77 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
-.+++|+|..|.|||||++.+..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999985
No 422
>PRK04040 adenylate kinase; Provisional
Probab=94.60 E-value=0.026 Score=54.91 Aligned_cols=23 Identities=35% Similarity=0.614 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..+|+|+|++|+||||+++.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999999877
No 423
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.60 E-value=0.092 Score=54.37 Aligned_cols=51 Identities=22% Similarity=0.216 Sum_probs=38.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHH
Q 003086 182 EGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSML 236 (849)
Q Consensus 182 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 236 (849)
+..+++.|+|.+|+|||++|.++.. ....+...++||+.... .+++.+.+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~--~~~l~~~~~ 71 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES--PEELLENAR 71 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC--HHHHHHHHH
Confidence 3568999999999999999999987 34455788999998755 344444443
No 424
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.60 E-value=0.043 Score=65.31 Aligned_cols=189 Identities=14% Similarity=0.126 Sum_probs=86.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCC----CCCHHHHHHHHHHHh
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASA----GDDRGELLRKINQYL 259 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~l~~~l 259 (849)
..+++|+|+.|.||||+.+.+.-.. .. ...-.+|.+..... -..+.++...++.... ..+...-...+...+
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~-l~--aq~G~~Vpa~~~~~-~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il 397 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLA-LM--FQSGIPIPANEHSE-IPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAIL 397 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHH-HH--HHhCCCccCCcccc-ccchhheeeecChHhHHhhhhhHHHHHHHHHHHHH
Confidence 4789999999999999999986520 00 01111222211100 0011111111111100 001111112222233
Q ss_pred c--CccEEEEEcCCCc-cCHHHHHHH----HhcCCCCCCceEEEEecchhhhhhccccc-cccccCCCCChhhHHHHHHH
Q 003086 260 L--GKRYLIVMDDVWG-EDLAWWRRI----YEGLPKGKGSSIIITTRNGKVSQKMGVKK-ARMHFPKFLSEDDSWLLFRK 331 (849)
Q Consensus 260 ~--~~~~LlVlDdv~~-~~~~~~~~l----~~~l~~~~~s~ilvTtr~~~v~~~~~~~~-~~~~~l~~L~~~e~~~lf~~ 331 (849)
. ..+-|+++|+.-. .++.....+ ...+. ..|+.+|+||...++........ .....+ .++.+ ... +..
T Consensus 398 ~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~-~~g~~viitTH~~eL~~~~~~~~~v~~~~~-~~d~~-~l~-p~Y 473 (771)
T TIGR01069 398 SKTTENSLVLFDELGAGTDPDEGSALAISILEYLL-KQNAQVLITTHYKELKALMYNNEGVENASV-LFDEE-TLS-PTY 473 (771)
T ss_pred HhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH-hcCCEEEEECChHHHHHHhcCCCCeEEeEE-EEcCC-CCc-eEE
Confidence 2 4789999999865 233333333 22332 24889999999877654332111 000111 01111 000 001
Q ss_pred HhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHhhhhhcCCCChHHHHHHHHhhhh
Q 003086 332 IAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVGGMMLYKPPTYNEWRRTADNFRD 390 (849)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l~~~~~~~~~w~~~~~~~~~ 390 (849)
....+ .+ -...|-+|++++ |+|-.+.--|..+.... ..+...++.++..
T Consensus 474 kl~~G-----~~--g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~--~~~~~~li~~L~~ 522 (771)
T TIGR01069 474 KLLKG-----IP--GESYAFEIAQRY-GIPHFIIEQAKTFYGEF--KEEINVLIEKLSA 522 (771)
T ss_pred EECCC-----CC--CCcHHHHHHHHh-CcCHHHHHHHHHHHHhh--HHHHHHHHHHHHH
Confidence 11000 01 133566777776 78888887777665433 3355555555543
No 425
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.59 E-value=0.098 Score=50.60 Aligned_cols=118 Identities=12% Similarity=0.097 Sum_probs=58.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEE---eCCcc-CHHHHHHHHHHHhcCCC---CC----------C
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVS---VSQTF-TEEQIMRSMLRNLGDAS---AG----------D 246 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~---~s~~~-~~~~~~~~i~~~l~~~~---~~----------~ 246 (849)
-.+++|+|..|.|||||++.+.... ......+.+. ++... ......+.+ ..+.... .. -
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~i-~~~~q~~~~~~~~t~~~~l~~~l 101 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLE---EPDSGSILIDGEDLTDLEDELPPLRRRI-GMVFQDFALFPHLTVLENIALGL 101 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEccccchhHHHHhhcE-EEEecCCccCCCCCHHHheeecC
Confidence 3589999999999999999997531 1122222221 11000 001110000 0000000 00 1
Q ss_pred CHHH-HHHHHHHHhcCccEEEEEcCCCc-cCHHHHHHHHhcCCC--CC-CceEEEEecchhhhh
Q 003086 247 DRGE-LLRKINQYLLGKRYLIVMDDVWG-EDLAWWRRIYEGLPK--GK-GSSIIITTRNGKVSQ 305 (849)
Q Consensus 247 ~~~~-~~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~--~~-~s~ilvTtr~~~v~~ 305 (849)
+..+ ..-.+...+..++-++++|+--. -|......+...+.. .. +..||++|.+.....
T Consensus 102 S~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 102 SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 1122 22234455666778999998744 345555555554432 22 567888887755444
No 426
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=94.58 E-value=1.1 Score=46.61 Aligned_cols=70 Identities=13% Similarity=0.126 Sum_probs=49.1
Q ss_pred cCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEecc-hhhhhhccccccccccCCCCChhhHHHHHHH
Q 003086 260 LGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITTRN-GKVSQKMGVKKARMHFPKFLSEDDSWLLFRK 331 (849)
Q Consensus 260 ~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTtr~-~~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~ 331 (849)
.+++-++|+|+++..+......+...+-.-+ ++.+|++|.+ ..+...+.+.. ..+.+.+ +.++..+.+..
T Consensus 102 ~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRc-q~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 102 EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRT-QIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcc-eeeeCCC-cHHHHHHHHHH
Confidence 3566799999999888889999999998755 6666666654 45555554443 5677766 66666666643
No 427
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.57 E-value=0.59 Score=43.42 Aligned_cols=125 Identities=12% Similarity=0.183 Sum_probs=78.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc-------------------Chhhhccc--CceEEEE--e------------------C
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN-------------------DREIENWF--ERRMWVS--V------------------S 223 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~-------------------~~~~~~~f--~~~~wv~--~------------------s 223 (849)
-.|+|||+.|.||+||.-...- |+.-+..| ..+-+|. . .
T Consensus 37 e~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ 116 (228)
T COG4181 37 ETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELR 116 (228)
T ss_pred ceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhc
Confidence 3689999999999999877633 11111122 1222321 1 1
Q ss_pred C--ccCHHHHHHHHHHHhcCCCC-------CCCHHHHHHHHHHHhcCccEEEEEcCC----CccCHHHHHHHHhcCCCCC
Q 003086 224 Q--TFTEEQIMRSMLRNLGDASA-------GDDRGELLRKINQYLLGKRYLIVMDDV----WGEDLAWWRRIYEGLPKGK 290 (849)
Q Consensus 224 ~--~~~~~~~~~~i~~~l~~~~~-------~~~~~~~~~~l~~~l~~~~~LlVlDdv----~~~~~~~~~~l~~~l~~~~ 290 (849)
. ..+.....++.+.+++.... -..-++..-.|.+.+...+-+++-|.- +..+-.....+.-.+....
T Consensus 117 ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~ 196 (228)
T COG4181 117 GESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRER 196 (228)
T ss_pred CCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhc
Confidence 1 33556677888888876532 123445555677778888888888864 3333344445555555566
Q ss_pred CceEEEEecchhhhhhccc
Q 003086 291 GSSIIITTRNGKVSQKMGV 309 (849)
Q Consensus 291 ~s~ilvTtr~~~v~~~~~~ 309 (849)
|...++.|.+..++..|..
T Consensus 197 G~TlVlVTHD~~LA~Rc~R 215 (228)
T COG4181 197 GTTLVLVTHDPQLAARCDR 215 (228)
T ss_pred CceEEEEeCCHHHHHhhhh
Confidence 9999999999999888754
No 428
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.53 E-value=0.086 Score=54.35 Aligned_cols=85 Identities=15% Similarity=0.192 Sum_probs=48.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCC--------CCCCHHHHHHH
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDAS--------AGDDRGELLRK 254 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~--------~~~~~~~~~~~ 254 (849)
+..+|.|+|.+|.|||||+..+.+. ..... .++.+ .....+..+ .+.++..+.+. +..+...+...
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~--l~~~~-~~~VI-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~~A 176 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMR--LKDSV-PCAVI-EGDQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIADA 176 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--hccCC-CEEEE-CCCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHHHH
Confidence 5889999999999999999998873 33332 22222 222222222 12233333321 12244455555
Q ss_pred HHHHhcCccEEEEEcCCCc
Q 003086 255 INQYLLGKRYLIVMDDVWG 273 (849)
Q Consensus 255 l~~~l~~~~~LlVlDdv~~ 273 (849)
+........=++|++++-+
T Consensus 177 l~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 177 APRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHhhcCCcEEEEECCCC
Confidence 5555444456889999864
No 429
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.52 E-value=0.03 Score=54.73 Aligned_cols=24 Identities=33% Similarity=0.349 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
+.++|.|+|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999875
No 430
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.51 E-value=0.42 Score=47.31 Aligned_cols=53 Identities=11% Similarity=0.112 Sum_probs=32.6
Q ss_pred HHHHHhcCccEEEEEcCCCc-cCHHHHH-HHHhcCCC---CCCceEEEEecchhhhhh
Q 003086 254 KINQYLLGKRYLIVMDDVWG-EDLAWWR-RIYEGLPK---GKGSSIIITTRNGKVSQK 306 (849)
Q Consensus 254 ~l~~~l~~~~~LlVlDdv~~-~~~~~~~-~l~~~l~~---~~~s~ilvTtr~~~v~~~ 306 (849)
.+...+...+-++++|+... -+....+ .+...+.. ..+..||++|.+.+....
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~ 188 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA 188 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh
Confidence 34556667888999999854 2344444 44444432 225678888887766543
No 431
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.50 E-value=0.12 Score=53.48 Aligned_cols=106 Identities=17% Similarity=0.184 Sum_probs=54.7
Q ss_pred ccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCC
Q 003086 164 VGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDAS 243 (849)
Q Consensus 164 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 243 (849)
.|...+..+.+..+.... ...|.|.|..|.||||+++.+.+. +.. .... -+.+.++.... +..+ .++...
T Consensus 62 lg~~~~~~~~l~~~~~~~--~GlilisG~tGSGKTT~l~all~~--i~~-~~~~-iitiEdp~E~~--~~~~-~q~~v~- 131 (264)
T cd01129 62 LGLKPENLEIFRKLLEKP--HGIILVTGPTGSGKTTTLYSALSE--LNT-PEKN-IITVEDPVEYQ--IPGI-NQVQVN- 131 (264)
T ss_pred cCCCHHHHHHHHHHHhcC--CCEEEEECCCCCcHHHHHHHHHhh--hCC-CCCe-EEEECCCceec--CCCc-eEEEeC-
Confidence 354444333333333322 358999999999999999988653 211 1111 12333221100 0000 011111
Q ss_pred CCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHH
Q 003086 244 AGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRI 282 (849)
Q Consensus 244 ~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l 282 (849)
........+.++..|+..+=.++++++.+ .+....+
T Consensus 132 -~~~~~~~~~~l~~~lR~~PD~i~vgEiR~--~e~a~~~ 167 (264)
T cd01129 132 -EKAGLTFARGLRAILRQDPDIIMVGEIRD--AETAEIA 167 (264)
T ss_pred -CcCCcCHHHHHHHHhccCCCEEEeccCCC--HHHHHHH
Confidence 11112345666777777888999999987 5544333
No 432
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.50 E-value=0.17 Score=57.44 Aligned_cols=97 Identities=18% Similarity=0.149 Sum_probs=56.1
Q ss_pred HHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCC------
Q 003086 171 RKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASA------ 244 (849)
Q Consensus 171 ~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------ 244 (849)
..+-+.|..+=..-.++.|.|++|+|||||+.++... ...+-+.+++++..+ +..++.+.+ +.++....
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~--~~~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g 324 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLEN--ACANKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQG 324 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCC
Confidence 3444444443335678999999999999999998774 222334567776554 355555554 44543211
Q ss_pred ----------CCCHHHHHHHHHHHhcC-ccEEEEEcCCC
Q 003086 245 ----------GDDRGELLRKINQYLLG-KRYLIVMDDVW 272 (849)
Q Consensus 245 ----------~~~~~~~~~~l~~~l~~-~~~LlVlDdv~ 272 (849)
....++....+.+.+.. +.-.+|+|.+.
T Consensus 325 ~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 325 LLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred cEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 11234455555555432 34466777664
No 433
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.49 E-value=0.067 Score=55.00 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 003086 187 IGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 187 i~I~G~~GiGKTtLa~~v~~~ 207 (849)
|.++|.+|+||||+|+.+...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999998763
No 434
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.48 E-value=2.2 Score=47.58 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=38.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcC
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGD 241 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 241 (849)
-.++.|-|.+|+|||++|..+..+...+. -..++|++.. .+..++..+++.....
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a~~~-g~~v~~fSlE--m~~~~l~~Rl~~~~~~ 248 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALRE-GKPVLFFSLE--MSAEQLGERLLASKSG 248 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECC--CCHHHHHHHHHHHHcC
Confidence 45889999999999999999875422222 2346666544 5778888888776543
No 435
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.47 E-value=0.56 Score=47.41 Aligned_cols=175 Identities=22% Similarity=0.264 Sum_probs=93.3
Q ss_pred CccccccccHHHHHHHHhcc----------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEA----------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQ 230 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 230 (849)
.++-|.+..++.|.+.+.-+ ...-+-|.++|++|.||+.||+.|..... .-|++||.. +
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn-------STFFSvSSS----D 201 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN-------STFFSVSSS----D 201 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC-------CceEEeehH----H
Confidence 35778888888887764322 22467899999999999999999987422 234455533 2
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHh-cCccEEEEEcCCCc-------cCHHHHHHHHhcC----C---CCC-CceE
Q 003086 231 IMRSMLRNLGDASAGDDRGELLRKINQYL-LGKRYLIVMDDVWG-------EDLAWWRRIYEGL----P---KGK-GSSI 294 (849)
Q Consensus 231 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~-------~~~~~~~~l~~~l----~---~~~-~s~i 294 (849)
+....+ + +.+.+...|.+.- .+++.+|++|.++. .+.+.-..|+.-| . +.. |.-|
T Consensus 202 LvSKWm---G------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLV 272 (439)
T KOG0739|consen 202 LVSKWM---G------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLV 272 (439)
T ss_pred HHHHHh---c------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEE
Confidence 222111 1 2234444444433 46889999999854 1123333333322 1 122 5555
Q ss_pred EEEecchhhhhhc-ccccc-ccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCch
Q 003086 295 IITTRNGKVSQKM-GVKKA-RMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLP 361 (849)
Q Consensus 295 lvTtr~~~v~~~~-~~~~~-~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 361 (849)
+=.|...=+.... ..... ++| =||.+.+|..-..+.-.+.. .+.-.+.--+++.++..|..
T Consensus 273 LgATNiPw~LDsAIRRRFekRIY--IPLPe~~AR~~MF~lhlG~t----p~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 273 LGATNIPWVLDSAIRRRFEKRIY--IPLPEAHARARMFKLHLGDT----PHVLTEQDFKELARKTEGYS 335 (439)
T ss_pred EecCCCchhHHHHHHHHhhccee--ccCCcHHHhhhhheeccCCC----ccccchhhHHHHHhhcCCCC
Confidence 5566543222111 10000 122 35677777665444332221 22223444566777777655
No 436
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.47 E-value=0.025 Score=54.38 Aligned_cols=24 Identities=38% Similarity=0.527 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
..+|+|-||-|+||||||+.+.++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 468999999999999999999874
No 437
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.46 E-value=0.16 Score=50.93 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003086 186 AIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~ 206 (849)
+|+|.|.+|.||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 438
>PRK05439 pantothenate kinase; Provisional
Probab=94.45 E-value=0.19 Score=52.75 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 182 EGILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 182 ~~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
....+|+|.|.+|+||||+|+.+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999998866
No 439
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.45 E-value=0.3 Score=51.97 Aligned_cols=82 Identities=22% Similarity=0.286 Sum_probs=53.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCC------CCCHHHHHHHHH
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASA------GDDRGELLRKIN 256 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~ 256 (849)
.-.+|.|-|-+|||||||.-.+... ....- .+.+|+-.+. +.++ +--++.++.+.. +.+.+.+.+.+.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsGEES--~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSGEES--LQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeCCcC--HHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 3568999999999999999998873 33333 6777765543 3332 334456654332 335555555555
Q ss_pred HHhcCccEEEEEcCCCc
Q 003086 257 QYLLGKRYLIVMDDVWG 273 (849)
Q Consensus 257 ~~l~~~~~LlVlDdv~~ 273 (849)
+ .++-++|+|-+..
T Consensus 166 ~---~~p~lvVIDSIQT 179 (456)
T COG1066 166 Q---EKPDLVVIDSIQT 179 (456)
T ss_pred h---cCCCEEEEeccce
Confidence 4 6788999999854
No 440
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=94.44 E-value=0.034 Score=57.71 Aligned_cols=39 Identities=26% Similarity=0.419 Sum_probs=29.3
Q ss_pred cHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcC
Q 003086 169 DTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 169 ~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
++.+++..|.+.+.....|.|+|.+|+||||++..+...
T Consensus 23 ~l~~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~ 61 (313)
T TIGR00991 23 KLLELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGE 61 (313)
T ss_pred HHHHHHHhcccccccceEEEEECCCCCCHHHHHHHHhCC
Confidence 344444444555556678899999999999999999874
No 441
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.43 E-value=0.049 Score=55.18 Aligned_cols=63 Identities=22% Similarity=0.304 Sum_probs=41.3
Q ss_pred HHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHH
Q 003086 170 TRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIM 232 (849)
Q Consensus 170 ~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 232 (849)
-.+++..+.....+..+|+|.|.||+||+||.-.+.....-+++=-.++=|.-|.+++--.++
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccc
Confidence 456666666655678899999999999999998887643333332334444445555443343
No 442
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.41 E-value=0.17 Score=51.53 Aligned_cols=116 Identities=16% Similarity=0.197 Sum_probs=59.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcChhhhc----------ccCceEEEEeCCcc-CHHHHHHHHHHHhcCCC-----------
Q 003086 186 AIGVVGMGGLGKTTIAQKVFNDREIEN----------WFERRMWVSVSQTF-TEEQIMRSMLRNLGDAS----------- 243 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~~~~~~~----------~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~----------- 243 (849)
+..|+|++|+|||+||..++....... .=..+++++...+. .+..-+..+...++...
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 567899999999999988865311111 11124555554432 23334444444432110
Q ss_pred -C-----C---CCHHHHHHHHHHHh-cCccEEEEEcCCCc------cCHHHHHHHHhcCCC---CCCceEEEEecch
Q 003086 244 -A-----G---DDRGELLRKINQYL-LGKRYLIVMDDVWG------EDLAWWRRIYEGLPK---GKGSSIIITTRNG 301 (849)
Q Consensus 244 -~-----~---~~~~~~~~~l~~~l-~~~~~LlVlDdv~~------~~~~~~~~l~~~l~~---~~~s~ilvTtr~~ 301 (849)
. . .......+.+.+.+ ..+.-+||+|-+-. .+......+...+.. ..|+.||+++...
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 0 0 01122333344333 34667999996521 234444444443322 2377888888753
No 443
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=94.39 E-value=0.15 Score=55.47 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=25.4
Q ss_pred HHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcC
Q 003086 172 KIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 172 ~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
.+++.+... ....+.|.|.||.|||+|.+.+.+.
T Consensus 12 ~v~~~~~~~--~~~~~fv~G~~GtGKs~l~~~i~~~ 45 (364)
T PF05970_consen 12 TVIEAIENE--EGLNFFVTGPAGTGKSFLIKAIIDY 45 (364)
T ss_pred HHHHHHHcc--CCcEEEEEcCCCCChhHHHHHHHHH
Confidence 344444432 3568899999999999999998774
No 444
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.38 E-value=0.016 Score=34.03 Aligned_cols=17 Identities=47% Similarity=0.690 Sum_probs=7.4
Q ss_pred cceEeccCCCCCcccCcc
Q 003086 587 LSYLCLSNTHPLIHLPPS 604 (849)
Q Consensus 587 Lr~L~L~~~~~~~~lp~~ 604 (849)
|++|+|++| .++.+|.+
T Consensus 2 L~~Ldls~n-~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSS 18 (22)
T ss_dssp ESEEEETSS-EESEEGTT
T ss_pred ccEEECCCC-cCEeCChh
Confidence 444444444 33344443
No 445
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=94.38 E-value=0.031 Score=66.68 Aligned_cols=190 Identities=15% Similarity=0.151 Sum_probs=87.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCC----CCCHHHHHHHHHHH
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASA----GDDRGELLRKINQY 258 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~l~~~ 258 (849)
+.+++.|+|+.+.||||+.+.+.--. + -...-.+|++.... .-.++..|...++.... ..+...-...+...
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~-~--maq~G~~vpa~~~~-~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~I 401 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAA-L--MAKSGLPIPANEPS-EIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRI 401 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHH-H--HHHhCCCcccCCCc-cccccceEEEecCCccchhhchhHHHHHHHHHHHH
Confidence 35789999999999999999885320 0 00111122222100 00111111111111111 01111112222222
Q ss_pred hc--CccEEEEEcCCCc-cCHHHHHHH----HhcCCCCCCceEEEEecchhhhhhcccccc-ccccCCCCChhhHHHHHH
Q 003086 259 LL--GKRYLIVMDDVWG-EDLAWWRRI----YEGLPKGKGSSIIITTRNGKVSQKMGVKKA-RMHFPKFLSEDDSWLLFR 330 (849)
Q Consensus 259 l~--~~~~LlVlDdv~~-~~~~~~~~l----~~~l~~~~~s~ilvTtr~~~v~~~~~~~~~-~~~~l~~L~~~e~~~lf~ 330 (849)
+. ..+.|+++|..-. .++.....+ ...+. ..|+.+|+||...++......... ....+. ++. +... +.
T Consensus 402 l~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~-~~~~~vIitTH~~el~~~~~~~~~v~~~~~~-~d~-~~l~-~~ 477 (782)
T PRK00409 402 LEKADKNSLVLFDELGAGTDPDEGAALAISILEYLR-KRGAKIIATTHYKELKALMYNREGVENASVE-FDE-ETLR-PT 477 (782)
T ss_pred HHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH-HCCCEEEEECChHHHHHHHhcCCCeEEEEEE-Eec-CcCc-EE
Confidence 22 4678999999865 233333333 23332 237899999999777665432110 011110 111 1100 00
Q ss_pred HHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHhhhhhcCCCChHHHHHHHHhhhh
Q 003086 331 KIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVGGMMLYKPPTYNEWRRTADNFRD 390 (849)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l~~~~~~~~~w~~~~~~~~~ 390 (849)
.....+. .-...|-+|++++ |+|-.+.--|..+.... ......++..+..
T Consensus 478 Ykl~~G~-------~g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~--~~~~~~li~~l~~ 527 (782)
T PRK00409 478 YRLLIGI-------PGKSNAFEIAKRL-GLPENIIEEAKKLIGED--KEKLNELIASLEE 527 (782)
T ss_pred EEEeeCC-------CCCcHHHHHHHHh-CcCHHHHHHHHHHHhhh--hhHHHHHHHHHHH
Confidence 0000000 0134566777777 78888887777665443 3355555555443
No 446
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.38 E-value=0.0033 Score=62.22 Aligned_cols=101 Identities=22% Similarity=0.120 Sum_probs=49.7
Q ss_pred CCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccc
Q 003086 608 LKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRL 687 (849)
Q Consensus 608 L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L 687 (849)
|.+...|+.-+|... .+ ....+|+.|+.|.|+-|.+. .+ ..+..++.|++|++-.|... +-..+.-|.++++|
T Consensus 18 l~~vkKLNcwg~~L~-DI-sic~kMp~lEVLsLSvNkIs-sL-~pl~rCtrLkElYLRkN~I~---sldEL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DI-SICEKMPLLEVLSLSVNKIS-SL-APLQRCTRLKELYLRKNCIE---SLDELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccCCCcc-HH-HHHHhcccceeEEeeccccc-cc-hhHHHHHHHHHHHHHhcccc---cHHHHHHHhcCchh
Confidence 334445555444321 11 12345667777777776664 22 23556667777765444211 11122335566666
Q ss_pred cceeeeeccCcccch-----HhhcCCCCCCeEE
Q 003086 688 RKLGLQLTCGDEIEE-----DALVNLRELQFLS 715 (849)
Q Consensus 688 ~~L~l~~~~~~~~~~-----~~l~~~~~L~~L~ 715 (849)
+.|.|..|...+..+ ..+.-+++|+.|+
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 666666653222111 3455566666654
No 447
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.36 E-value=0.032 Score=51.80 Aligned_cols=20 Identities=35% Similarity=0.594 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 003086 186 AIGVVGMGGLGKTTIAQKVF 205 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~ 205 (849)
.|+|.|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999885
No 448
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.36 E-value=0.046 Score=57.32 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=40.6
Q ss_pred CccccccccHHHHHHHHhcc----CCCeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 161 TLVVGLEGDTRKIKDWLFEA----EEGILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..|+|.++.++++++.+... +..-+++.++|+.|.||||||+.+.+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999998764 34678999999999999999999866
No 449
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.34 E-value=0.14 Score=50.52 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
++++|+|+.|.|||||.+.+.-
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999999864
No 450
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.34 E-value=0.2 Score=57.91 Aligned_cols=114 Identities=19% Similarity=0.241 Sum_probs=61.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhccc---CceEEEEeCCccCHHHHHHHHHHHhcCCCCCC----CHHHHHHHHHH
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFNDREIENWF---ERRMWVSVSQTFTEEQIMRSMLRNLGDASAGD----DRGELLRKINQ 257 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~----~~~~~~~~l~~ 257 (849)
++..|.|.+|.||||+++.+... ..... ...+.+......-...+.+.+-..+..-...+ ........+.+
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~--l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHr 245 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAA--LIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHR 245 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH--HHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHH
Confidence 58899999999999999888763 21111 23455554433333334333332221100000 00001223333
Q ss_pred Hhc------------Ccc---EEEEEcCCCccCHHHHHHHHhcCCCCCCceEEEEecchh
Q 003086 258 YLL------------GKR---YLIVMDDVWGEDLAWWRRIYEGLPKGKGSSIIITTRNGK 302 (849)
Q Consensus 258 ~l~------------~~~---~LlVlDdv~~~~~~~~~~l~~~l~~~~~s~ilvTtr~~~ 302 (849)
.|. +.+ -++|+|++.-.+......+...+|. ++|+|+--=..+
T Consensus 246 lLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~~--~~rlIlvGD~~Q 303 (615)
T PRK10875 246 LLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALPP--HARVIFLGDRDQ 303 (615)
T ss_pred HhCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhccc--CCEEEEecchhh
Confidence 331 111 2899999977667777777777753 678887664433
No 451
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.32 E-value=0.075 Score=54.78 Aligned_cols=23 Identities=30% Similarity=0.226 Sum_probs=18.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
+.|.|.|.||.||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 46899999999999999998773
No 452
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=94.28 E-value=0.08 Score=52.88 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHh
Q 003086 185 LAIGVVGMGGLGKTTIAQKVF 205 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~ 205 (849)
.+++|+|+.|.||||+.+.+.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~ 51 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVA 51 (216)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 789999999999999999985
No 453
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.25 E-value=0.63 Score=49.87 Aligned_cols=105 Identities=16% Similarity=0.101 Sum_probs=63.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCc-cCHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhcC
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQT-FTEEQIMRSMLRNLGDASA-GDDRGELLRKINQYLLG 261 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~l~~~l~~ 261 (849)
.++|++||+.|+||||-..+++........=..+..++.... ....+-++.-++-++.+.. ..+..++...+... .+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l-~~ 281 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL-RD 281 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-hc
Confidence 689999999999998754444331111223345777776542 2344555666666666654 44566666555543 33
Q ss_pred ccEEEEEcCCCc--cCHHHHHHHHhcCCCCC
Q 003086 262 KRYLIVMDDVWG--EDLAWWRRIYEGLPKGK 290 (849)
Q Consensus 262 ~~~LlVlDdv~~--~~~~~~~~l~~~l~~~~ 290 (849)
. =+|.+|-+-. .+....+++..++..+.
T Consensus 282 ~-d~ILVDTaGrs~~D~~~i~el~~~~~~~~ 311 (407)
T COG1419 282 C-DVILVDTAGRSQYDKEKIEELKELIDVSH 311 (407)
T ss_pred C-CEEEEeCCCCCccCHHHHHHHHHHHhccc
Confidence 3 4667787754 34666677777776543
No 454
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.24 E-value=0.13 Score=56.95 Aligned_cols=88 Identities=15% Similarity=0.203 Sum_probs=55.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCc-cCHHHHHHHHHHHhcCCC------C-CCCH------HH
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQT-FTEEQIMRSMLRNLGDAS------A-GDDR------GE 250 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~------~-~~~~------~~ 250 (849)
..++|.|.+|+|||||+.++..... +.+-+.++++-+.+. ..+.++..++...=.... . .++. ..
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~ 222 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVL 222 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHH
Confidence 4689999999999999998887422 235567777777644 345666666654321111 1 1111 11
Q ss_pred HHHHHHHHh---cCccEEEEEcCCCc
Q 003086 251 LLRKINQYL---LGKRYLIVMDDVWG 273 (849)
Q Consensus 251 ~~~~l~~~l---~~~~~LlVlDdv~~ 273 (849)
..-.+.+++ .++++||++|++-.
T Consensus 223 ~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 223 TGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHhcCCceEEEeccchH
Confidence 223344555 37999999999944
No 455
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.22 E-value=0.19 Score=49.25 Aligned_cols=41 Identities=24% Similarity=0.305 Sum_probs=27.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhccc--------CceEEEEeCCc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFNDREIENWF--------ERRMWVSVSQT 225 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~s~~ 225 (849)
.++.|+|++|+||||++..+.........| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 378899999999999998886643222222 35778877655
No 456
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.20 E-value=0.041 Score=53.71 Aligned_cols=24 Identities=38% Similarity=0.677 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
...+|+|.|.+|.||||+|+.++.
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~ 30 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSE 30 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 468999999999999999999987
No 457
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.18 E-value=0.15 Score=51.22 Aligned_cols=48 Identities=29% Similarity=0.304 Sum_probs=37.8
Q ss_pred CCccccccccHHHHHHHHhcc----C-------CCeEEEEEEcCCCCcHHHHHHHHhcC
Q 003086 160 HTLVVGLEGDTRKIKDWLFEA----E-------EGILAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~----~-------~~~~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
-.++=|.+..+++|.+.+.-+ + ..++-|.++|.+|.|||-||+.|+|.
T Consensus 184 y~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANq 242 (440)
T KOG0726|consen 184 YADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQ 242 (440)
T ss_pred hcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcc
Confidence 346778999999998876432 0 24567889999999999999999993
No 458
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.18 E-value=0.57 Score=45.90 Aligned_cols=60 Identities=22% Similarity=0.276 Sum_probs=39.3
Q ss_pred HHHHHHHhcCccEEEEEcCCCc-cCHHHHHHHHhcCCC--CCCceEEEEecchhhhhhccccc
Q 003086 252 LRKINQYLLGKRYLIVMDDVWG-EDLAWWRRIYEGLPK--GKGSSIIITTRNGKVSQKMGVKK 311 (849)
Q Consensus 252 ~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~--~~~s~ilvTtr~~~v~~~~~~~~ 311 (849)
...+.+.+-=++-+.|||..++ -|.+..+.+...+.. ..++-+++.|..+.+........
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~ 214 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDK 214 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCE
Confidence 3444555555667999999987 356666655555442 33777777777788888776543
No 459
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.17 E-value=0.17 Score=55.36 Aligned_cols=24 Identities=38% Similarity=0.376 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
...+|.++|.+|+||||+|.+++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999988865
No 460
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.16 E-value=0.076 Score=53.27 Aligned_cols=119 Identities=13% Similarity=0.093 Sum_probs=59.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCC----CCCHHHHHHHHHHHh
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASA----GDDRGELLRKINQYL 259 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~l~~~l 259 (849)
.+++.|+|+.|.||||+.+.+.-- .+-.+ .-.+|.+... .-.....++..++.... ......-...+...+
T Consensus 30 ~~~~~l~G~n~~GKstll~~i~~~-~~la~--~g~~vpa~~~--~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~il 104 (222)
T cd03285 30 SRFLIITGPNMGGKSTYIRQIGVI-VLMAQ--IGCFVPCDSA--DIPIVDCILARVGASDSQLKGVSTFMAEMLETAAIL 104 (222)
T ss_pred CeEEEEECCCCCChHHHHHHHHHH-HHHHH--hCCCcCcccE--EEeccceeEeeeccccchhcCcChHHHHHHHHHHHH
Confidence 578999999999999999887532 11111 1112222210 00112222222222211 112222222333333
Q ss_pred --cCccEEEEEcCCC---c-cCH--HHHHHHHhcCCCCCCceEEEEecchhhhhhcc
Q 003086 260 --LGKRYLIVMDDVW---G-EDL--AWWRRIYEGLPKGKGSSIIITTRNGKVSQKMG 308 (849)
Q Consensus 260 --~~~~~LlVlDdv~---~-~~~--~~~~~l~~~l~~~~~s~ilvTtr~~~v~~~~~ 308 (849)
...+-|++||..- + .|. ..|..+ ..+....++.+|+||-..++...+.
T Consensus 105 ~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il-~~l~~~~~~~vlisTH~~el~~~~~ 160 (222)
T cd03285 105 KSATENSLIIIDELGRGTSTYDGFGLAWAIA-EYIATQIKCFCLFATHFHELTALAD 160 (222)
T ss_pred HhCCCCeEEEEecCcCCCChHHHHHHHHHHH-HHHHhcCCCeEEEEechHHHHHHhh
Confidence 3568899999993 2 111 122222 3333334788999998776665443
No 461
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.16 E-value=0.16 Score=49.63 Aligned_cols=66 Identities=21% Similarity=0.218 Sum_probs=38.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHh
Q 003086 186 AIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYL 259 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l 259 (849)
.|+|+|-||+||||+|..+... -...+=..+.-|....+++ +.++|+...+........+.+++..
T Consensus 2 kIaI~GKGG~GKTtiaalll~~-l~~~~~~~VLvVDaDpd~n-------L~~~LGve~~~~~lg~~~e~~~k~~ 67 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKR-LLSKGGYNVLVVDADPDSN-------LPEALGVEEPMKYLGGKRELLKKRT 67 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHH-HHhcCCceEEEEeCCCCCC-------hHHhcCCCCCCcccccHHHHHHHHh
Confidence 5899999999999999885442 1222212345555555554 3445666554444444444444443
No 462
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.14 E-value=0.16 Score=55.65 Aligned_cols=86 Identities=19% Similarity=0.234 Sum_probs=50.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCc-cCHHHHHHHHHHHhcCCC-------CCCC-HH-----
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQT-FTEEQIMRSMLRNLGDAS-------AGDD-RG----- 249 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~-------~~~~-~~----- 249 (849)
-..++|+|..|+|||||++.+++... .+.++++-+.+. -.+.++..+.+..-+... ..++ ..
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 35789999999999999999987421 234555555543 334455554444322111 1111 11
Q ss_pred HHHHHHHHHh--cCccEEEEEcCCCc
Q 003086 250 ELLRKINQYL--LGKRYLIVMDDVWG 273 (849)
Q Consensus 250 ~~~~~l~~~l--~~~~~LlVlDdv~~ 273 (849)
...-.+.+++ +++.+|+++||+-.
T Consensus 234 ~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 234 YLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 1122234444 58999999999954
No 463
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.13 E-value=0.14 Score=55.87 Aligned_cols=85 Identities=18% Similarity=0.230 Sum_probs=50.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCcc-CHHHHHHHHHHHhcCCCC-------CCCHH------H
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTF-TEEQIMRSMLRNLGDASA-------GDDRG------E 250 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~-------~~~~~------~ 250 (849)
..++|+|..|+|||||++.+.... ..+.++.+-+.+.. .+.++...++..-+.... .++.. .
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~ 238 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCE 238 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHH
Confidence 568999999999999999998631 22455556665443 445566655443221111 11111 1
Q ss_pred HHHHHHHHh--cCccEEEEEcCCCc
Q 003086 251 LLRKINQYL--LGKRYLIVMDDVWG 273 (849)
Q Consensus 251 ~~~~l~~~l--~~~~~LlVlDdv~~ 273 (849)
..-.+.+++ +++++|+++||+-.
T Consensus 239 ~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 239 TATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHcCCCEEEEEcChHH
Confidence 112233444 68999999999954
No 464
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.13 E-value=0.17 Score=56.36 Aligned_cols=87 Identities=17% Similarity=0.192 Sum_probs=47.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCC-ccCHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhcC
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQ-TFTEEQIMRSMLRNLGDASA-GDDRGELLRKINQYLLG 261 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~l~~~l~~ 261 (849)
..|++++|+.|+||||++.+++.....+..-..+..|+... .....+-++...+.++.+.. ..+..+....+. .+.+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~-~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALS-ELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHH-hccC
Confidence 36999999999999999999986322221112355555432 12333444555555554432 112222222222 2334
Q ss_pred ccEEEEEcCCC
Q 003086 262 KRYLIVMDDVW 272 (849)
Q Consensus 262 ~~~LlVlDdv~ 272 (849)
+ -.+++|-.-
T Consensus 335 ~-d~VLIDTaG 344 (484)
T PRK06995 335 K-HIVLIDTIG 344 (484)
T ss_pred C-CeEEeCCCC
Confidence 3 477788765
No 465
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.10 E-value=0.073 Score=61.58 Aligned_cols=77 Identities=16% Similarity=0.134 Sum_probs=57.3
Q ss_pred CCccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHh
Q 003086 160 HTLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNL 239 (849)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 239 (849)
-.+++|.++.++.+...+... +.+.|+|.+|+||||+|+.+.+. -...+++..+|..- ...+...+++.++..+
T Consensus 30 ~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~-l~~~~~~~~~~~~n-p~~~~~~~~~~v~~~~ 103 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAEL-LPKEELQDILVYPN-PEDPNNPKIRTVPAGK 103 (637)
T ss_pred HHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHH-cChHhHHHheEeeC-CCcchHHHHHHHHHhc
Confidence 346889988888887766654 36889999999999999999874 22334577788655 4447788888888776
Q ss_pred cCC
Q 003086 240 GDA 242 (849)
Q Consensus 240 ~~~ 242 (849)
+..
T Consensus 104 G~~ 106 (637)
T PRK13765 104 GKQ 106 (637)
T ss_pred CHH
Confidence 643
No 466
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.08 E-value=0.38 Score=49.42 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
-.+++|+|..|.|||||++.++.-
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999763
No 467
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.08 E-value=0.31 Score=47.85 Aligned_cols=116 Identities=16% Similarity=0.179 Sum_probs=57.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcCh--h-hhcc--cC----------c-eEEEEeCCcc-CHHHHHHHHHHHhcCCCCCC
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDR--E-IENW--FE----------R-RMWVSVSQTF-TEEQIMRSMLRNLGDASAGD 246 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~--~-~~~~--f~----------~-~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~ 246 (849)
-.+++|.|..|.|||||.+.+..-. . ..+. |+ . +.++.-.... ....+...+.-..... .-
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~--~L 112 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR--GL 112 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc--cC
Confidence 4589999999999999999997632 1 1110 10 1 1111111000 0011111111100000 11
Q ss_pred CHHH-HHHHHHHHhcCccEEEEEcCCCc-cCHHHHHHHHhcCCC--CCCceEEEEecch
Q 003086 247 DRGE-LLRKINQYLLGKRYLIVMDDVWG-EDLAWWRRIYEGLPK--GKGSSIIITTRNG 301 (849)
Q Consensus 247 ~~~~-~~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~--~~~s~ilvTtr~~ 301 (849)
+..+ ..-.+...+..++-++++|+.-. -|....+.+...+.. ..|..||++|.+.
T Consensus 113 S~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 171 (194)
T cd03213 113 SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQP 171 (194)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc
Confidence 2222 22234455556677999999754 345555555555443 2367788888775
No 468
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.07 E-value=0.088 Score=53.23 Aligned_cols=85 Identities=27% Similarity=0.377 Sum_probs=51.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCC----------------C--
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDAS----------------A-- 244 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~----------------~-- 244 (849)
...++.|.|.+|+|||++|.++.... .+..=+.++||+...+ ++++.+.+- .++... .
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~-~~~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNG-LKNFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH-HHHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHh-hhhcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEecccccc
Confidence 34689999999999999998876531 2221345788887654 344444433 333210 0
Q ss_pred ---CCCHHHHHHHHHHHhcC-ccEEEEEcCC
Q 003086 245 ---GDDRGELLRKINQYLLG-KRYLIVMDDV 271 (849)
Q Consensus 245 ---~~~~~~~~~~l~~~l~~-~~~LlVlDdv 271 (849)
..+.+.+...+.+.++. +...+|+|.+
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 23566677777766543 3468888886
No 469
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.07 E-value=0.045 Score=50.32 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.++|+|+|.+|+||||+.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 57999999999999999988765
No 470
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=94.06 E-value=0.32 Score=50.71 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
-.+++|+|..|.|||||++.+..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (272)
T PRK15056 33 GSIAALVGVNGSGKSTLFKALMG 55 (272)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999965
No 471
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.06 E-value=0.045 Score=54.36 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=23.4
Q ss_pred ccCCCeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 179 EAEEGILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 179 ~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+....+.|+|+|++|+|||||++.+..
T Consensus 8 ~~~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 8 NKPAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCCCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 3334578899999999999999999875
No 472
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.05 E-value=0.064 Score=57.77 Aligned_cols=100 Identities=18% Similarity=0.174 Sum_probs=54.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcChhh----hcccCceEEEEeCCccCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHH
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFNDREI----ENWFERRMWVSVSQTFTEEQIMRSMLRNLGDAS-AGDDRGELLRKINQ 257 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~l~~ 257 (849)
..+=+-|||..|.|||.|.-.+|+...+ +-||. ....++-+.+.... ..+... .+.+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~~~~~~~~~l~----~va~ 122 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLHQLRGQDDPLP----QVAD 122 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHHHHhCCCccHH----HHHH
Confidence 4567899999999999999999986333 22332 23333333332211 122333 3334
Q ss_pred HhcCccEEEEEcCCCccCHHHHHHHHhcCCC-CCCceEEEEecc
Q 003086 258 YLLGKRYLIVMDDVWGEDLAWWRRIYEGLPK-GKGSSIIITTRN 300 (849)
Q Consensus 258 ~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~s~ilvTtr~ 300 (849)
.+.++..||.||++.-.|..+=--+...|.. -...-|||+|.|
T Consensus 123 ~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN 166 (362)
T PF03969_consen 123 ELAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGVVLVATSN 166 (362)
T ss_pred HHHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCCEEEecCC
Confidence 4556677999999865444432222222222 123345556654
No 473
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.04 E-value=0.38 Score=54.55 Aligned_cols=181 Identities=17% Similarity=0.157 Sum_probs=93.6
Q ss_pred CCCCccccccccHHHH---HHHHhccC-------CCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccC
Q 003086 158 YDHTLVVGLEGDTRKI---KDWLFEAE-------EGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFT 227 (849)
Q Consensus 158 ~~~~~~vGr~~~~~~l---~~~L~~~~-------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 227 (849)
+.-.++-|.|+.++++ ++.|.++. .=++-|.++|++|.|||.||+.+.....+ . +.+.|...
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~V--P-----Ff~iSGS~- 218 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV--P-----FFSISGSD- 218 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCC--C-----ceeccchh-
Confidence 3445788988766655 55666553 12456889999999999999999885432 2 22233221
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCc----------cCHHHHHHHHhcCC---CCC----
Q 003086 228 EEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWG----------EDLAWWRRIYEGLP---KGK---- 290 (849)
Q Consensus 228 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~----------~~~~~~~~l~~~l~---~~~---- 290 (849)
.++.+- +-......+...+..+.-++++++|.++. ...+.+++....+. ++.
T Consensus 219 -------FVemfV----GvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~ 287 (596)
T COG0465 219 -------FVEMFV----GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNE 287 (596)
T ss_pred -------hhhhhc----CCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCC
Confidence 011110 11223333444445556689999998754 11334444333221 121
Q ss_pred CceEEEEecchhhhhhc--cc-cccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhH
Q 003086 291 GSSIIITTRNGKVSQKM--GV-KKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLA 363 (849)
Q Consensus 291 ~s~ilvTtr~~~v~~~~--~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLa 363 (849)
|-.|+-.|...+|.... .. ...+.+.+..-+-..-.++++-++-...- ....++. .|++.+-|.--|
T Consensus 288 gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l--~~~Vdl~----~iAr~tpGfsGA 357 (596)
T COG0465 288 GVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPL--AEDVDLK----KIARGTPGFSGA 357 (596)
T ss_pred ceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCC--CCcCCHH----HHhhhCCCcccc
Confidence 33334344434443221 11 11145555655666777777766532211 1111222 277777777654
No 474
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.02 E-value=0.04 Score=53.38 Aligned_cols=23 Identities=35% Similarity=0.326 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
.+++|+|++|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998763
No 475
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.99 E-value=0.098 Score=60.72 Aligned_cols=76 Identities=16% Similarity=0.139 Sum_probs=52.1
Q ss_pred CCccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhc-ccCceEEEEeCCccCHHHHHHHHHHH
Q 003086 160 HTLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIEN-WFERRMWVSVSQTFTEEQIMRSMLRN 238 (849)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~f~~~~wv~~s~~~~~~~~~~~i~~~ 238 (849)
-.+++|.++.++.+...+... +.+.++|++|+||||+|+.+.+. +.. .|...+++ .....+...+++.++..
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~--l~~~~~~~~~~~-~n~~~~~~~~~~~v~~~ 89 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAEL--LPDEELEDILVY-PNPEDPNMPRIVEVPAG 89 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHH--cCchhheeEEEE-eCCCCCchHHHHHHHHh
Confidence 457889998888777777654 25669999999999999999873 322 23333333 23334566778888877
Q ss_pred hcCC
Q 003086 239 LGDA 242 (849)
Q Consensus 239 l~~~ 242 (849)
++..
T Consensus 90 ~g~~ 93 (608)
T TIGR00764 90 EGRE 93 (608)
T ss_pred hchH
Confidence 7654
No 476
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.95 E-value=0.73 Score=52.81 Aligned_cols=176 Identities=15% Similarity=0.081 Sum_probs=92.3
Q ss_pred cccccccHHHHHHHHhccC-------CCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHH
Q 003086 163 VVGLEGDTRKIKDWLFEAE-------EGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSM 235 (849)
Q Consensus 163 ~vGr~~~~~~l~~~L~~~~-------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 235 (849)
..+++.-+..+.+.+.... ....++.++|.+|+||||+++.++.. ..-|+ +=|++. ++
T Consensus 403 ~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~--lg~h~---~evdc~----------el 467 (953)
T KOG0736|consen 403 PPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASE--LGLHL---LEVDCY----------EL 467 (953)
T ss_pred CccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHH--hCCce---EeccHH----------HH
Confidence 4456666666666665431 13468899999999999999999873 33332 111111 00
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCc--------cCHHHHHHHHhcC-----CCCC-CceEEEEecc-
Q 003086 236 LRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWG--------EDLAWWRRIYEGL-----PKGK-GSSIIITTRN- 300 (849)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--------~~~~~~~~l~~~l-----~~~~-~s~ilvTtr~- 300 (849)
.......+...+.....+.-.-.+.+|.|-+++- ++......+...+ +... +.-++.||.+
T Consensus 468 ----~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~ 543 (953)
T KOG0736|consen 468 ----VAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSI 543 (953)
T ss_pred ----hhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEecccc
Confidence 0111111222233333332233455665555421 1122222222222 2122 3444555443
Q ss_pred hhhhhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhH
Q 003086 301 GKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLA 363 (849)
Q Consensus 301 ~~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLa 363 (849)
+.+...+.....+.+.+..+++++-.++|+.+..... -+-..-.+..+++|.|.-++
T Consensus 544 ~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~------~n~~v~~k~~a~~t~gfs~~ 600 (953)
T KOG0736|consen 544 EDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLP------LNQDVNLKQLARKTSGFSFG 600 (953)
T ss_pred ccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccc------cchHHHHHHHHHhcCCCCHH
Confidence 4444444333337888999999999999999873222 12233346788888877654
No 477
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.94 E-value=0.21 Score=54.99 Aligned_cols=88 Identities=18% Similarity=0.283 Sum_probs=53.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCc-cCHHHHHHHHHHHhcCCC-------CCCCHH------H
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQT-FTEEQIMRSMLRNLGDAS-------AGDDRG------E 250 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~-------~~~~~~------~ 250 (849)
..++|.|.+|+|||||+..+...... ++=+.++++-+.+. ..+.++++++...=.... ...+.. .
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~ 223 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVAL 223 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 46899999999999999988663221 11235667777544 355666666665322111 111111 1
Q ss_pred HHHHHHHHh---cCccEEEEEcCCCc
Q 003086 251 LLRKINQYL---LGKRYLIVMDDVWG 273 (849)
Q Consensus 251 ~~~~l~~~l---~~~~~LlVlDdv~~ 273 (849)
..-.+.+++ +++++||++|++-.
T Consensus 224 ~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 224 TGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHhcCCceEEEecchHH
Confidence 222345555 67999999999954
No 478
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=93.94 E-value=0.6 Score=49.42 Aligned_cols=49 Identities=16% Similarity=0.017 Sum_probs=34.9
Q ss_pred cccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHH
Q 003086 314 MHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAI 364 (849)
Q Consensus 314 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 364 (849)
++++++++.+|+..++..+.-.+--. .....+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~--~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLR--SRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccc--cCCCCHHHHHHHHHhcCCCHHHh
Confidence 68999999999999999887443321 11334556677777779999644
No 479
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.93 E-value=0.16 Score=51.49 Aligned_cols=112 Identities=16% Similarity=0.117 Sum_probs=63.7
Q ss_pred cccccccHHHHHHHHh----cc-CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhc-ccCce-EEEEeCCccCHHHHHHHH
Q 003086 163 VVGLEGDTRKIKDWLF----EA-EEGILAIGVVGMGGLGKTTIAQKVFNDREIEN-WFERR-MWVSVSQTFTEEQIMRSM 235 (849)
Q Consensus 163 ~vGr~~~~~~l~~~L~----~~-~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~f~~~-~wv~~s~~~~~~~~~~~i 235 (849)
++|-.-.++.|+..+. .+ ..++-+++.+|.+|+||.-.++.+.++..-.+ +=+.+ .+|..-+-+....+
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~i---- 159 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKI---- 159 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHH----
Confidence 4555445555555544 33 33677999999999999999999877522111 00111 11111111111111
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHh-cCccEEEEEcCCCccCHHHHHHHHhcCC
Q 003086 236 LRNLGDASAGDDRGELLRKINQYL-LGKRYLIVMDDVWGEDLAWWRRIYEGLP 287 (849)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~~~~~~l~~~l~ 287 (849)
.+=.+++...++.-+ .-++.|+|+|+++.......+.|...+.
T Consensus 160 ---------e~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 160 ---------EDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred ---------HHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 111234444444444 3478999999999877788888877664
No 480
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.92 E-value=0.46 Score=47.78 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
-.+++|+|..|.|||||++.+..
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999999965
No 481
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.91 E-value=0.036 Score=54.79 Aligned_cols=21 Identities=43% Similarity=0.781 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003086 186 AIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~ 206 (849)
+|+|.|.+|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999866
No 482
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=93.90 E-value=0.94 Score=44.78 Aligned_cols=46 Identities=17% Similarity=0.199 Sum_probs=36.4
Q ss_pred CccccccccHHHHHHHHhccC-----------CCeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 161 TLVVGLEGDTRKIKDWLFEAE-----------EGILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~-----------~~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
+++-|.+..++++++.+.-+- ..++-|..+|++|.|||-+|+....
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAa 227 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAA 227 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHH
Confidence 467789999999988764321 1456788999999999999998766
No 483
>PF13245 AAA_19: Part of AAA domain
Probab=93.86 E-value=0.092 Score=42.40 Aligned_cols=22 Identities=32% Similarity=0.208 Sum_probs=16.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHh
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVF 205 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~ 205 (849)
.+++.|.|++|.|||+++....
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i 31 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARI 31 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3577889999999995554443
No 484
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.84 E-value=0.044 Score=52.80 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
...|.|+|++|+||||+|+.+..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 485
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.84 E-value=0.26 Score=52.06 Aligned_cols=85 Identities=16% Similarity=0.246 Sum_probs=49.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeC-CccCHHHHHHHHHHHhcCCC-------CCCCHH------H
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVS-QTFTEEQIMRSMLRNLGDAS-------AGDDRG------E 250 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~-------~~~~~~------~ 250 (849)
..++|+|..|.|||||.+.+..... -+..+..-+. +..++.++....+..-.... ..++.. .
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~ 145 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAY 145 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHH
Confidence 5789999999999999999887422 1233333333 33455666655554322111 111111 1
Q ss_pred HHHHHHHHh--cCccEEEEEcCCCc
Q 003086 251 LLRKINQYL--LGKRYLIVMDDVWG 273 (849)
Q Consensus 251 ~~~~l~~~l--~~~~~LlVlDdv~~ 273 (849)
..-.+.+++ +++.+||++||+-.
T Consensus 146 ~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 146 TATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHcCCCeEEEeccchH
Confidence 122233333 58999999999854
No 486
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.83 E-value=0.042 Score=52.27 Aligned_cols=21 Identities=43% Similarity=0.667 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 003086 187 IGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 187 i~I~G~~GiGKTtLa~~v~~~ 207 (849)
|.|.|.+|+|||||++.+++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 789999999999999999874
No 487
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.82 E-value=0.53 Score=48.12 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=37.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHh
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNL 239 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 239 (849)
-.++.|.|.+|+|||++|..+..+.. ..+=..++|++... +.+++...++...
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~-~~~g~~vly~s~E~--~~~~~~~r~~~~~ 65 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIA-KKQGKPVLFFSLEM--SKEQLLQRLLASE 65 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH-HhCCCceEEEeCCC--CHHHHHHHHHHHh
Confidence 46899999999999999998876422 22123577877664 5667777776543
No 488
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=93.80 E-value=0.4 Score=57.66 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
-..|+|+|..|.|||||++.+..
T Consensus 505 Ge~vaIvG~sGsGKSTLlklL~g 527 (710)
T TIGR03796 505 GQRVALVGGSGSGKSTIAKLVAG 527 (710)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999954
No 489
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=93.80 E-value=0.12 Score=54.77 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
-.+++|+|+.|.|||||.+.+..
T Consensus 19 Ge~~~l~G~NGaGKSTLl~~l~G 41 (302)
T TIGR01188 19 GEVFGFLGPNGAGKTTTIRMLTT 41 (302)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999965
No 490
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.79 E-value=0.041 Score=51.51 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003086 186 AIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
++.|+|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3789999999999999998773
No 491
>PRK08149 ATP synthase SpaL; Validated
Probab=93.79 E-value=0.23 Score=54.35 Aligned_cols=86 Identities=14% Similarity=0.222 Sum_probs=51.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCC-ccCHHHHHHHHHHHhcCCC-------CCCCH------H
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQ-TFTEEQIMRSMLRNLGDAS-------AGDDR------G 249 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~-------~~~~~------~ 249 (849)
-..++|+|..|+|||||++.++.... -+.++...+.. ..++.++..+.+....... ..++. .
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 35789999999999999999987422 23333333432 3456666666665433221 11111 1
Q ss_pred HHHHHHHHHh--cCccEEEEEcCCCc
Q 003086 250 ELLRKINQYL--LGKRYLIVMDDVWG 273 (849)
Q Consensus 250 ~~~~~l~~~l--~~~~~LlVlDdv~~ 273 (849)
.....+.+++ +++++||++||+-.
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccchHH
Confidence 1222233444 58999999999954
No 492
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.78 E-value=0.039 Score=53.33 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003086 186 AIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
+|+|.|.+|.||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998773
No 493
>PRK14531 adenylate kinase; Provisional
Probab=93.76 E-value=0.39 Score=46.62 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003086 186 AIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.|.|+|++|.||||+|+.+..
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999876
No 494
>PLN02318 phosphoribulokinase/uridine kinase
Probab=93.76 E-value=0.079 Score=59.53 Aligned_cols=33 Identities=39% Similarity=0.681 Sum_probs=26.9
Q ss_pred HHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 174 KDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 174 ~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+.+.....+..+|+|.|..|.||||||+.+..
T Consensus 55 ~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lag 87 (656)
T PLN02318 55 CQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLN 87 (656)
T ss_pred HHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHh
Confidence 444544555688999999999999999999976
No 495
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.76 E-value=0.055 Score=52.21 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
..+|.|+|++|+||||+|+.+...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 496
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.75 E-value=0.063 Score=51.89 Aligned_cols=21 Identities=48% Similarity=0.759 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003086 186 AIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~ 206 (849)
+|+|.|.+|.||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 497
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.74 E-value=0.51 Score=53.14 Aligned_cols=175 Identities=13% Similarity=0.116 Sum_probs=95.2
Q ss_pred ccccccccHHHHHHHHhcc-----------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHH
Q 003086 162 LVVGLEGDTRKIKDWLFEA-----------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQ 230 (849)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 230 (849)
.+-|-...+..+.....-+ -...+-+..+|++|.|||-+++.|.++.. +++-.. +..
T Consensus 185 ~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~--------a~~~~i---~~p- 252 (693)
T KOG0730|consen 185 DIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYG--------AFLFLI---NGP- 252 (693)
T ss_pred ccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhC--------ceeEec---ccH-
Confidence 4455555555555544321 12456788999999999999999998522 111111 111
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCc-cEEEEEcCCCccC----------HHHHHHH---HhcCCCCCCceEEE
Q 003086 231 IMRSMLRNLGDASAGDDRGELLRKINQYLLGK-RYLIVMDDVWGED----------LAWWRRI---YEGLPKGKGSSIII 296 (849)
Q Consensus 231 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~-~~LlVlDdv~~~~----------~~~~~~l---~~~l~~~~~s~ilv 296 (849)
++++.+ .+++...+...+.+..+.+ +.++.+|++.... ...-.++ ...+....+.-||-
T Consensus 253 ---eli~k~----~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~ 325 (693)
T KOG0730|consen 253 ---ELISKF----PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLA 325 (693)
T ss_pred ---HHHHhc----ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEE
Confidence 222222 2446677777888888888 9999999986511 1111222 22222112333445
Q ss_pred Eecchhh-hhhcc-ccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCch
Q 003086 297 TTRNGKV-SQKMG-VKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLP 361 (849)
Q Consensus 297 Ttr~~~v-~~~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 361 (849)
||+...- -.... ...+..+.+.--+..+-.++++...-.-.. .-......|+..+.|.-
T Consensus 326 atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~------~~~~~l~~iA~~thGyv 386 (693)
T KOG0730|consen 326 ATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNL------LSDVDLEDIAVSTHGYV 386 (693)
T ss_pred ecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCC------cchhhHHHHHHHccchh
Confidence 5554321 11111 122245666667777777777777532211 11244556777887776
No 498
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.74 E-value=0.045 Score=52.78 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999998763
No 499
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=93.73 E-value=0.77 Score=50.58 Aligned_cols=135 Identities=17% Similarity=0.183 Sum_probs=74.8
Q ss_pred ccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChh-----hhc----ccC-----------ceEEE---
Q 003086 164 VGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDRE-----IEN----WFE-----------RRMWV--- 220 (849)
Q Consensus 164 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-----~~~----~f~-----------~~~wv--- 220 (849)
+|-++.- .|..-|.-+-+.-..|++||+.|+|||||.+.++-+.. +.. +|. ...|.
T Consensus 397 F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~ 475 (614)
T KOG0927|consen 397 FGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEF 475 (614)
T ss_pred cCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHH
Confidence 4445444 45555544433345689999999999999999987521 111 111 00110
Q ss_pred --EeCCccCHHHHHHHHHHHhcCCCCC-------CCHHHHHHHHH-HHhcCccEEEEEcCCCc-cCHHHHHHHHhcCCCC
Q 003086 221 --SVSQTFTEEQIMRSMLRNLGDASAG-------DDRGELLRKIN-QYLLGKRYLIVMDDVWG-EDLAWWRRIYEGLPKG 289 (849)
Q Consensus 221 --~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~~~l~-~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~ 289 (849)
..-......+..+.|+..++..... -+..+....+. ...-..+-+||||.--+ .+.+..+.+.+++..-
T Consensus 476 ~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~ 555 (614)
T KOG0927|consen 476 MMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF 555 (614)
T ss_pred HHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc
Confidence 0000123456667777777665321 12222222232 33356778999998755 3566677777787666
Q ss_pred CCceEEEEecc
Q 003086 290 KGSSIIITTRN 300 (849)
Q Consensus 290 ~~s~ilvTtr~ 300 (849)
.|+-| ++|.+
T Consensus 556 ~Ggvv-~vSHD 565 (614)
T KOG0927|consen 556 PGGVV-LVSHD 565 (614)
T ss_pred CCcee-eeech
Confidence 66544 45544
No 500
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.71 E-value=0.14 Score=57.09 Aligned_cols=97 Identities=24% Similarity=0.238 Sum_probs=52.0
Q ss_pred HHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEE-EEeCCccCHHHHHHHHHHHhcCC----CCCC
Q 003086 172 KIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMW-VSVSQTFTEEQIMRSMLRNLGDA----SAGD 246 (849)
Q Consensus 172 ~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~w-v~~s~~~~~~~~~~~i~~~l~~~----~~~~ 246 (849)
+++++|..-.. -.-+.|+|.+|+|||||++.|.+.. ...+-++.++ +-|.+.. +++ .+|-+.+... ....
T Consensus 405 RvIDll~PIGk-GQR~LIvgpp~aGKTtLL~~IAn~i-~~n~~~~~~ivvLIgERp--eEV-tdm~rsVkgeVVasT~D~ 479 (672)
T PRK12678 405 RVIDLIMPIGK-GQRGLIVSPPKAGKTTILQNIANAI-TTNNPECHLMVVLVDERP--EEV-TDMQRSVKGEVIASTFDR 479 (672)
T ss_pred eeeeeeccccc-CCEeEEeCCCCCCHHHHHHHHHHHH-hhcCCCeEEEEEEEeCch--hhH-HHHHHhccceEEEECCCC
Confidence 44555554322 2357899999999999999998831 1223344433 3344322 222 2233333211 1111
Q ss_pred ------CHHHHHHHHHHHh--cCccEEEEEcCCCc
Q 003086 247 ------DRGELLRKINQYL--LGKRYLIVMDDVWG 273 (849)
Q Consensus 247 ------~~~~~~~~l~~~l--~~~~~LlVlDdv~~ 273 (849)
....+.-.+.+++ .++.+||++|++-.
T Consensus 480 p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 480 PPSDHTTVAELAIERAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchH
Confidence 1122222334444 68999999999954
Done!