Query 003086
Match_columns 849
No_of_seqs 512 out of 4385
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 12:48:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003086.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003086hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 4.1E-48 1.4E-52 444.7 24.1 315 164-503 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 2E-39 6.8E-44 374.1 23.1 285 162-494 129-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.5E-38 5.1E-43 405.5 30.0 312 158-501 121-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 2.2E-35 7.7E-40 344.5 30.7 308 159-498 122-449 (591)
5 2id5_A Lingo-1, leucine rich r 99.9 8.7E-22 3E-26 223.5 20.1 288 529-839 32-334 (477)
6 4fmz_A Internalin; leucine ric 99.9 1.2E-20 4E-25 204.8 22.5 290 509-838 44-346 (347)
7 1ogq_A PGIP-2, polygalacturona 99.9 8.2E-22 2.8E-26 210.0 12.1 211 549-774 67-280 (313)
8 3rgz_A Protein brassinosteroid 99.9 2.3E-21 7.8E-26 232.7 17.2 142 549-697 409-550 (768)
9 3rgz_A Protein brassinosteroid 99.9 2.9E-21 1E-25 231.8 18.0 158 557-721 393-550 (768)
10 3v47_A TOLL-like receptor 5B a 99.9 1.8E-21 6E-26 219.7 15.2 312 509-840 30-410 (455)
11 1ogq_A PGIP-2, polygalacturona 99.8 1.3E-21 4.3E-26 208.6 10.6 258 558-832 50-309 (313)
12 4eco_A Uncharacterized protein 99.8 2E-21 6.8E-26 227.8 13.1 221 545-779 194-450 (636)
13 4ecn_A Leucine-rich repeat pro 99.8 1.5E-20 5.2E-25 223.9 19.9 313 509-839 491-841 (876)
14 4ecn_A Leucine-rich repeat pro 99.8 3E-21 1E-25 230.0 12.7 275 550-840 440-768 (876)
15 1xku_A Decorin; proteoglycan, 99.8 2.9E-20 9.8E-25 200.0 19.1 273 529-836 52-330 (330)
16 2id5_A Lingo-1, leucine rich r 99.8 3.2E-20 1.1E-24 210.7 20.2 265 558-841 32-312 (477)
17 3o6n_A APL1; leucine-rich repe 99.8 2.5E-20 8.4E-25 205.6 18.4 255 553-840 88-354 (390)
18 4eco_A Uncharacterized protein 99.8 1.3E-20 4.4E-25 220.9 15.5 310 509-839 249-601 (636)
19 3v47_A TOLL-like receptor 5B a 99.8 1.6E-20 5.3E-25 211.9 15.3 298 508-825 53-406 (455)
20 2ft3_A Biglycan; proteoglycan, 99.8 7E-20 2.4E-24 197.1 19.2 271 529-835 54-330 (332)
21 3vq2_A TLR4, TOLL-like recepto 99.8 3.9E-20 1.3E-24 216.8 18.5 254 508-778 31-323 (606)
22 4fmz_A Internalin; leucine ric 99.8 1.1E-19 3.7E-24 197.2 20.5 274 526-841 41-327 (347)
23 3bz5_A Internalin-J, INLJ; leu 99.8 9.9E-20 3.4E-24 204.0 20.0 247 553-839 59-332 (457)
24 3vq2_A TLR4, TOLL-like recepto 99.8 5.9E-20 2E-24 215.2 18.5 308 508-840 55-463 (606)
25 3oja_B Anopheles plasmodium-re 99.8 7.2E-20 2.5E-24 213.3 18.0 266 553-840 70-360 (597)
26 4fcg_A Uncharacterized protein 99.8 6.6E-20 2.2E-24 196.4 15.9 228 556-820 79-307 (328)
27 3t6q_A CD180 antigen; protein- 99.8 6.2E-20 2.1E-24 215.0 16.7 108 549-660 72-180 (606)
28 3j0a_A TOLL-like receptor 5; m 99.8 1.4E-19 4.9E-24 219.3 20.2 274 508-797 23-370 (844)
29 1ziw_A TOLL-like receptor 3; i 99.8 9.7E-20 3.3E-24 216.4 17.2 274 508-798 24-362 (680)
30 3o6n_A APL1; leucine-rich repe 99.8 2.4E-19 8.1E-24 197.7 19.0 259 526-825 90-350 (390)
31 1o6v_A Internalin A; bacterial 99.8 6.8E-19 2.3E-23 198.8 22.4 82 525-620 64-145 (466)
32 2z7x_B TOLL-like receptor 1, v 99.8 1.2E-19 4E-24 208.4 16.4 61 734-799 321-384 (520)
33 2z7x_B TOLL-like receptor 1, v 99.8 2E-19 6.7E-24 206.5 18.2 122 509-645 21-150 (520)
34 2z81_A CD282 antigen, TOLL-lik 99.8 4.9E-20 1.7E-24 213.2 13.1 177 509-699 26-210 (549)
35 3j0a_A TOLL-like receptor 5; m 99.8 1.2E-19 4E-24 220.1 16.9 183 527-721 22-216 (844)
36 2z81_A CD282 antigen, TOLL-lik 99.8 5.5E-20 1.9E-24 212.8 13.2 152 508-667 49-206 (549)
37 4fcg_A Uncharacterized protein 99.8 4.6E-20 1.6E-24 197.6 11.5 224 528-774 80-313 (328)
38 3t6q_A CD180 antigen; protein- 99.8 1.3E-19 4.5E-24 212.2 15.8 160 552-720 272-436 (606)
39 1o6v_A Internalin A; bacterial 99.8 4.9E-19 1.7E-23 200.0 18.7 120 527-664 44-163 (466)
40 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 5.1E-19 1.7E-23 204.9 18.5 92 549-646 67-159 (562)
41 1ziw_A TOLL-like receptor 3; i 99.8 2.1E-19 7.2E-24 213.5 15.0 291 529-839 25-367 (680)
42 3oja_B Anopheles plasmodium-re 99.8 5.6E-19 1.9E-23 205.7 17.7 289 509-825 51-356 (597)
43 2z63_A TOLL-like receptor 4, v 99.8 7.7E-19 2.6E-23 204.2 17.0 142 509-659 28-175 (570)
44 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 9.2E-19 3.1E-23 202.8 17.5 133 508-655 51-193 (562)
45 2z63_A TOLL-like receptor 4, v 99.8 2E-18 6.7E-23 200.7 19.6 176 529-718 28-209 (570)
46 3bz5_A Internalin-J, INLJ; leu 99.8 6.3E-18 2.2E-22 189.3 20.8 181 510-722 43-225 (457)
47 2z80_A TOLL-like receptor 2, v 99.8 4.1E-19 1.4E-23 192.9 10.5 217 552-780 70-295 (353)
48 1xku_A Decorin; proteoglycan, 99.8 5.3E-18 1.8E-22 182.3 18.5 221 558-800 52-274 (330)
49 2ft3_A Biglycan; proteoglycan, 99.8 3.3E-18 1.1E-22 184.0 14.8 220 558-800 54-275 (332)
50 3o53_A Protein LRIM1, AGAP0063 99.7 1E-18 3.6E-23 186.4 8.0 259 548-835 24-283 (317)
51 2z80_A TOLL-like receptor 2, v 99.7 3E-18 1E-22 186.0 11.1 263 549-840 45-316 (353)
52 3zyi_A Leucine-rich repeat-con 99.7 9.1E-18 3.1E-22 188.7 15.2 226 529-775 75-303 (452)
53 3zyi_A Leucine-rich repeat-con 99.7 1E-17 3.6E-22 188.2 15.6 225 558-800 75-301 (452)
54 3zyj_A Leucine-rich repeat-con 99.7 1.6E-17 5.5E-22 186.0 15.1 226 529-775 64-292 (440)
55 2z66_A Variable lymphocyte rec 99.7 5.4E-18 1.8E-22 180.2 10.6 223 558-798 28-257 (306)
56 1ozn_A Reticulon 4 receptor; N 99.7 6.4E-18 2.2E-22 177.5 10.8 206 557-776 31-239 (285)
57 1ozn_A Reticulon 4 receptor; N 99.7 2.5E-17 8.6E-22 173.0 15.0 183 585-778 32-217 (285)
58 2z66_A Variable lymphocyte rec 99.7 5.8E-18 2E-22 179.9 9.8 232 529-776 28-262 (306)
59 3zyj_A Leucine-rich repeat-con 99.7 3.1E-17 1.1E-21 183.6 15.8 231 549-799 57-289 (440)
60 3o53_A Protein LRIM1, AGAP0063 99.7 2.9E-18 9.8E-23 183.0 5.7 267 527-828 32-300 (317)
61 3oja_A Leucine-rich immune mol 99.7 1.1E-17 3.7E-22 189.2 9.9 238 556-822 32-270 (487)
62 2qen_A Walker-type ATPase; unk 99.7 1.1E-15 3.7E-20 165.7 24.6 296 158-495 9-349 (350)
63 1w5s_A Origin recognition comp 99.7 4E-16 1.4E-20 173.2 21.2 300 159-474 20-372 (412)
64 1h6u_A Internalin H; cell adhe 99.7 9.6E-17 3.3E-21 170.2 15.2 201 554-782 37-237 (308)
65 1jl5_A Outer protein YOPM; leu 99.7 5.4E-17 1.9E-21 181.6 13.4 210 525-777 30-252 (454)
66 3oja_A Leucine-rich immune mol 99.7 1.5E-17 5.1E-22 188.0 6.4 217 528-775 33-250 (487)
67 1wwl_A Monocyte differentiatio 99.7 2.5E-17 8.4E-22 175.3 7.5 157 560-723 65-242 (312)
68 3g06_A SSPH2 (leucine-rich rep 99.7 5.5E-16 1.9E-20 178.8 18.9 234 529-824 61-294 (622)
69 2z62_A TOLL-like receptor 4, v 99.7 3.5E-16 1.2E-20 163.4 14.1 203 558-775 28-237 (276)
70 2z62_A TOLL-like receptor 4, v 99.7 4E-16 1.4E-20 163.0 14.5 209 576-797 21-232 (276)
71 1wwl_A Monocyte differentiatio 99.7 4.3E-17 1.5E-21 173.5 7.2 206 555-776 92-310 (312)
72 3rfs_A Internalin B, repeat mo 99.7 1.7E-16 5.9E-21 165.2 11.5 199 554-775 37-235 (272)
73 2o6q_A Variable lymphocyte rec 99.7 1.3E-15 4.4E-20 158.4 17.4 199 560-775 18-218 (270)
74 3qfl_A MLA10; coiled-coil, (CC 99.7 1.4E-17 4.9E-22 145.6 1.6 81 4-88 1-83 (115)
75 1jl5_A Outer protein YOPM; leu 99.6 9.3E-16 3.2E-20 171.5 16.2 241 557-839 90-371 (454)
76 1p9a_G Platelet glycoprotein I 99.6 1.1E-15 3.9E-20 160.2 15.4 201 555-775 7-208 (290)
77 1z7x_W Ribonuclease inhibitor; 99.6 7.8E-18 2.7E-22 190.1 -1.4 277 559-840 86-413 (461)
78 4g8a_A TOLL-like receptor 4; l 99.6 2E-15 6.8E-20 177.7 17.8 139 508-656 51-196 (635)
79 1z7x_W Ribonuclease inhibitor; 99.6 4.9E-18 1.7E-22 191.8 -6.6 318 510-839 4-384 (461)
80 2fna_A Conserved hypothetical 99.6 1.8E-14 6E-19 156.6 21.8 293 158-494 10-356 (357)
81 2ca6_A RAN GTPase-activating p 99.6 6.5E-18 2.2E-22 185.8 -5.8 224 549-776 23-288 (386)
82 3g06_A SSPH2 (leucine-rich rep 99.6 1E-14 3.5E-19 168.1 19.7 249 529-841 40-300 (622)
83 2o6q_A Variable lymphocyte rec 99.6 5.6E-15 1.9E-19 153.6 15.5 179 558-748 37-216 (270)
84 2xwt_C Thyrotropin receptor; s 99.6 1.3E-15 4.4E-20 155.3 10.1 197 559-799 32-236 (239)
85 4glp_A Monocyte differentiatio 99.6 3.8E-15 1.3E-19 158.2 13.7 205 556-776 89-308 (310)
86 2ca6_A RAN GTPase-activating p 99.6 3.9E-17 1.3E-21 179.6 -1.8 252 524-778 27-319 (386)
87 3rfs_A Internalin B, repeat mo 99.6 2.8E-15 9.7E-20 155.9 10.8 201 527-756 39-242 (272)
88 1p9a_G Platelet glycoprotein I 99.6 8.7E-15 3E-19 153.5 13.7 177 558-749 31-207 (290)
89 4glp_A Monocyte differentiatio 99.6 2.2E-15 7.6E-20 160.0 8.2 165 558-723 64-238 (310)
90 2ast_B S-phase kinase-associat 99.6 3.7E-16 1.3E-20 168.3 1.9 202 558-772 70-282 (336)
91 2ast_B S-phase kinase-associat 99.6 9.1E-16 3.1E-20 165.3 4.6 224 558-799 47-282 (336)
92 3goz_A Leucine-rich repeat-con 99.6 2.6E-16 8.7E-21 171.3 -0.1 229 544-778 8-269 (362)
93 2xwt_C Thyrotropin receptor; s 99.6 6.1E-15 2.1E-19 150.3 9.7 177 529-722 31-218 (239)
94 1h6u_A Internalin H; cell adhe 99.6 2.1E-14 7.2E-19 152.1 13.9 193 580-800 36-228 (308)
95 1fnn_A CDC6P, cell division co 99.5 3E-12 1E-16 140.7 31.4 321 160-500 16-386 (389)
96 4g8a_A TOLL-like receptor 4; l 99.5 3.1E-14 1.1E-18 167.5 16.2 114 549-666 67-182 (635)
97 3m19_A Variable lymphocyte rec 99.5 5.5E-14 1.9E-18 144.3 14.8 151 559-720 15-166 (251)
98 2v1u_A Cell division control p 99.5 1.1E-12 3.9E-17 143.9 25.9 296 159-474 17-352 (387)
99 3goz_A Leucine-rich repeat-con 99.5 8.6E-16 3E-20 167.1 0.8 239 528-777 21-299 (362)
100 4ezg_A Putative uncharacterize 99.5 1.1E-14 3.9E-19 143.4 8.1 153 555-721 41-193 (197)
101 1m9s_A Internalin B; cell inva 99.5 2E-14 6.9E-19 165.6 10.5 169 554-747 39-207 (605)
102 3m19_A Variable lymphocyte rec 99.5 1.3E-13 4.5E-18 141.4 15.2 180 585-777 14-194 (251)
103 1h6t_A Internalin B; cell adhe 99.5 6.1E-14 2.1E-18 147.2 12.7 148 554-720 42-189 (291)
104 3ogk_B Coronatine-insensitive 99.5 1.2E-14 4.3E-19 169.4 8.1 164 550-722 212-391 (592)
105 2qby_B CDC6 homolog 3, cell di 99.5 3.9E-12 1.3E-16 139.5 26.7 293 160-475 19-341 (384)
106 4ay9_X Follicle-stimulating ho 99.5 7.4E-14 2.5E-18 151.0 12.5 218 558-822 30-254 (350)
107 1h6t_A Internalin B; cell adhe 99.5 9.5E-14 3.3E-18 145.7 12.9 147 554-719 64-210 (291)
108 2qby_A CDC6 homolog 1, cell di 99.5 1.4E-12 4.8E-17 143.1 21.4 296 159-474 18-349 (386)
109 3ogk_B Coronatine-insensitive 99.5 6.5E-15 2.2E-19 171.8 2.4 269 553-840 107-422 (592)
110 3cvr_A Invasion plasmid antige 99.5 1.9E-13 6.6E-18 155.5 12.6 186 558-778 59-246 (571)
111 1m9s_A Internalin B; cell inva 99.4 2.5E-13 8.5E-18 156.5 12.2 172 526-723 40-211 (605)
112 2p1m_B Transport inhibitor res 99.4 1.5E-14 5.2E-19 168.7 0.7 203 510-719 106-324 (594)
113 2v9t_B SLIT homolog 2 protein 99.4 8.3E-13 2.8E-17 132.3 11.4 149 562-721 15-164 (220)
114 2v70_A SLIT-2, SLIT homolog 2 99.4 9.7E-13 3.3E-17 131.8 10.6 150 562-722 15-166 (220)
115 4ezg_A Putative uncharacterize 99.4 9.8E-13 3.4E-17 129.4 9.8 152 527-698 42-194 (197)
116 1xeu_A Internalin C; cellular 99.4 4.7E-13 1.6E-17 138.1 7.0 147 554-720 37-183 (263)
117 2p1m_B Transport inhibitor res 99.4 3.4E-14 1.2E-18 165.7 -2.2 290 525-833 62-405 (594)
118 2o6s_A Variable lymphocyte rec 99.4 1.7E-12 6E-17 128.9 10.3 129 586-719 29-158 (208)
119 4ay9_X Follicle-stimulating ho 99.4 3.2E-12 1.1E-16 138.0 13.2 223 561-831 12-240 (350)
120 1xeu_A Internalin C; cellular 99.4 1.8E-12 6.1E-17 133.7 10.6 169 556-750 17-185 (263)
121 3e6j_A Variable lymphocyte rec 99.3 3E-12 1E-16 129.1 11.7 101 558-663 40-141 (229)
122 4b8c_D Glucose-repressible alc 99.3 2.2E-12 7.6E-17 152.4 10.3 152 509-668 173-327 (727)
123 2o6s_A Variable lymphocyte rec 99.3 4.9E-12 1.7E-16 125.6 10.5 170 587-775 9-178 (208)
124 1njg_A DNA polymerase III subu 99.3 1.8E-11 6.3E-16 124.8 15.1 197 161-371 23-231 (250)
125 2xot_A Amphoterin-induced prot 99.3 3.8E-12 1.3E-16 138.1 9.7 157 558-722 39-202 (361)
126 2ell_A Acidic leucine-rich nuc 99.3 8.5E-12 2.9E-16 119.2 10.6 108 555-667 21-130 (168)
127 2xot_A Amphoterin-induced prot 99.3 6.4E-12 2.2E-16 136.3 10.1 155 530-698 40-202 (361)
128 3e6j_A Variable lymphocyte rec 99.3 1.3E-11 4.5E-16 124.4 11.4 151 560-722 21-172 (229)
129 2v70_A SLIT-2, SLIT homolog 2 99.3 1.3E-11 4.4E-16 123.6 11.1 132 558-698 32-166 (220)
130 1dce_A Protein (RAB geranylger 99.3 8.2E-14 2.8E-18 159.5 -5.6 196 555-795 346-566 (567)
131 2v9t_B SLIT homolog 2 protein 99.3 1.7E-11 5.7E-16 122.7 11.8 152 588-775 14-165 (220)
132 2chg_A Replication factor C sm 99.2 1.1E-10 3.6E-15 117.3 16.5 185 161-368 17-204 (226)
133 3cvr_A Invasion plasmid antige 99.2 4.1E-11 1.4E-15 136.4 14.5 175 586-800 60-241 (571)
134 2je0_A Acidic leucine-rich nuc 99.2 1.3E-11 4.6E-16 115.2 8.2 109 555-667 14-123 (149)
135 1w8a_A SLIT protein; signaling 99.2 5.6E-11 1.9E-15 116.1 10.0 96 561-663 11-108 (192)
136 4b8c_D Glucose-repressible alc 99.2 5E-12 1.7E-16 149.4 2.2 122 576-705 215-336 (727)
137 2ell_A Acidic leucine-rich nuc 99.2 3.1E-11 1.1E-15 115.2 7.4 133 582-721 21-159 (168)
138 2wfh_A SLIT homolog 2 protein 99.2 1.1E-10 3.7E-15 114.1 11.0 97 561-664 13-109 (193)
139 1dce_A Protein (RAB geranylger 99.2 8.7E-12 3E-16 142.7 3.7 161 549-722 363-546 (567)
140 1a9n_A U2A', U2A'; complex (nu 99.1 8.1E-11 2.8E-15 113.2 9.1 130 553-696 14-151 (176)
141 1hqc_A RUVB; extended AAA-ATPa 99.1 1.1E-09 3.9E-14 116.6 17.3 274 161-472 12-324 (324)
142 2je0_A Acidic leucine-rich nuc 99.1 3.9E-11 1.3E-15 112.0 5.1 128 583-717 15-148 (149)
143 1w8a_A SLIT protein; signaling 99.1 1.6E-10 5.5E-15 112.8 8.5 131 587-724 10-141 (192)
144 1sxj_B Activator 1 37 kDa subu 99.0 8.6E-10 2.9E-14 117.5 12.7 185 161-368 21-210 (323)
145 2wfh_A SLIT homolog 2 protein 99.0 5.4E-10 1.8E-14 109.1 10.0 128 587-722 12-139 (193)
146 1ds9_A Outer arm dynein; leuci 99.0 5.1E-12 1.8E-16 124.3 -4.6 107 554-665 14-123 (198)
147 3sb4_A Hypothetical leucine ri 99.0 5.4E-10 1.9E-14 119.4 10.4 98 557-663 48-154 (329)
148 1a9n_A U2A', U2A'; complex (nu 99.0 4E-10 1.4E-14 108.4 6.8 133 579-720 13-151 (176)
149 2o6r_A Variable lymphocyte rec 99.0 1.8E-09 6.2E-14 103.8 10.4 100 560-666 9-109 (177)
150 2o6r_A Variable lymphocyte rec 98.9 3.7E-09 1.3E-13 101.6 11.6 106 558-667 28-134 (177)
151 1iqp_A RFCS; clamp loader, ext 98.9 5E-09 1.7E-13 111.8 12.5 184 161-371 25-215 (327)
152 3g39_A Variable lymphocyte rec 98.9 5.4E-09 1.8E-13 99.6 9.4 101 560-667 11-112 (170)
153 1ds9_A Outer arm dynein; leuci 98.8 2.4E-10 8.1E-15 112.3 -1.4 126 587-721 25-152 (198)
154 2r9u_A Variable lymphocyte rec 98.8 9.8E-09 3.4E-13 98.1 9.5 96 561-664 15-112 (174)
155 3te6_A Regulatory protein SIR3 98.8 3.3E-08 1.1E-12 102.7 13.8 172 162-335 21-213 (318)
156 4fdw_A Leucine rich hypothetic 98.8 4.6E-08 1.6E-12 106.8 15.0 211 550-780 128-340 (401)
157 1jr3_A DNA polymerase III subu 98.8 4.9E-08 1.7E-12 106.2 14.0 194 161-368 16-221 (373)
158 4fdw_A Leucine rich hypothetic 98.7 9.7E-08 3.3E-12 104.2 15.4 181 579-776 174-359 (401)
159 2chq_A Replication factor C sm 98.7 7E-08 2.4E-12 102.4 13.0 182 161-368 17-204 (319)
160 3g39_A Variable lymphocyte rec 98.7 4.5E-08 1.6E-12 93.1 9.1 104 586-696 10-113 (170)
161 3pfi_A Holliday junction ATP-d 98.7 6.6E-07 2.3E-11 95.7 19.2 176 160-367 28-226 (338)
162 2r9u_A Variable lymphocyte rec 98.7 5.6E-08 1.9E-12 92.8 9.2 102 587-696 14-116 (174)
163 1sxj_D Activator 1 41 kDa subu 98.6 3.8E-07 1.3E-11 98.3 15.6 195 161-367 37-234 (353)
164 3un9_A NLR family member X1; l 98.6 1E-09 3.4E-14 118.8 -5.4 44 680-723 206-253 (372)
165 3uk6_A RUVB-like 2; hexameric 98.6 6.5E-07 2.2E-11 97.0 16.2 199 160-367 43-302 (368)
166 1jbk_A CLPB protein; beta barr 98.6 1.2E-07 4.2E-12 92.1 8.7 149 161-329 22-194 (195)
167 3bos_A Putative DNA replicatio 98.5 1.3E-07 4.6E-12 95.7 8.0 172 161-367 28-216 (242)
168 3sb4_A Hypothetical leucine ri 98.5 2.1E-07 7.3E-12 99.1 9.5 103 631-743 224-327 (329)
169 2ifg_A High affinity nerve gro 98.5 2.3E-07 7.7E-12 99.8 9.4 92 549-646 23-116 (347)
170 3h4m_A Proteasome-activating n 98.5 1.1E-06 3.9E-11 91.3 14.4 183 159-366 15-229 (285)
171 2z4s_A Chromosomal replication 98.5 8.5E-07 2.9E-11 97.8 14.0 203 162-388 106-332 (440)
172 3un9_A NLR family member X1; l 98.5 3.8E-09 1.3E-13 114.2 -5.4 167 557-748 71-250 (372)
173 3pvs_A Replication-associated 98.4 1.2E-06 4E-11 96.5 12.5 180 161-367 26-214 (447)
174 2ra8_A Uncharacterized protein 98.4 6.9E-08 2.4E-12 103.4 1.8 40 683-722 250-292 (362)
175 3syl_A Protein CBBX; photosynt 98.4 1.2E-06 4.2E-11 92.2 11.4 158 162-334 32-218 (309)
176 1sxj_E Activator 1 40 kDa subu 98.4 8.9E-07 3E-11 95.4 10.5 195 161-368 14-237 (354)
177 2ifg_A High affinity nerve gro 98.4 6.1E-07 2.1E-11 96.3 8.9 98 562-667 12-113 (347)
178 1d2n_A N-ethylmaleimide-sensit 98.4 8.1E-06 2.8E-10 84.1 16.9 200 161-390 33-263 (272)
179 3u61_B DNA polymerase accessor 98.3 1.6E-06 5.5E-11 92.0 11.5 172 161-365 26-213 (324)
180 3eie_A Vacuolar protein sortin 98.3 5.9E-06 2E-10 87.4 15.5 185 160-368 17-228 (322)
181 1xwi_A SKD1 protein; VPS4B, AA 98.3 1.6E-05 5.5E-10 83.8 18.7 186 160-368 11-223 (322)
182 1sxj_A Activator 1 95 kDa subu 98.3 1.3E-06 4.4E-11 98.8 10.9 192 160-368 38-253 (516)
183 3d8b_A Fidgetin-like protein 1 98.3 5.2E-06 1.8E-10 89.1 15.1 184 161-368 84-295 (357)
184 2qz4_A Paraplegin; AAA+, SPG7, 98.3 1.9E-05 6.5E-10 80.8 18.5 184 161-367 6-221 (262)
185 2qp9_X Vacuolar protein sortin 98.3 1.3E-05 4.5E-10 85.7 16.9 185 160-368 50-261 (355)
186 1sxj_C Activator 1 40 kDa subu 98.3 5E-06 1.7E-10 88.7 13.3 178 161-367 25-211 (340)
187 1a5t_A Delta prime, HOLB; zinc 98.3 1.7E-05 5.9E-10 84.2 17.0 171 167-368 8-205 (334)
188 1l8q_A Chromosomal replication 98.3 7E-06 2.4E-10 87.0 13.7 168 170-363 23-203 (324)
189 3vfd_A Spastin; ATPase, microt 98.2 1.4E-05 4.6E-10 87.1 16.2 185 159-367 113-325 (389)
190 3b9p_A CG5977-PA, isoform A; A 98.2 2.1E-05 7.1E-10 82.2 16.1 183 160-367 20-232 (297)
191 3n70_A Transport activator; si 98.2 2E-06 7E-11 79.1 7.3 113 162-300 2-115 (145)
192 2ra8_A Uncharacterized protein 98.2 2.8E-07 9.7E-12 98.6 1.4 61 550-617 164-227 (362)
193 2zan_A Vacuolar protein sortin 98.1 3.6E-05 1.2E-09 85.0 17.0 187 159-368 132-345 (444)
194 3cf0_A Transitional endoplasmi 98.1 4.3E-05 1.5E-09 79.8 16.1 179 160-363 14-223 (301)
195 3hu3_A Transitional endoplasmi 98.0 3.5E-05 1.2E-09 85.6 14.0 182 161-367 204-414 (489)
196 2p65_A Hypothetical protein PF 98.0 3.1E-06 1.1E-10 81.5 4.9 45 161-207 22-66 (187)
197 4fs7_A Uncharacterized protein 98.0 2.8E-05 9.5E-10 84.9 12.9 123 527-663 69-214 (394)
198 3co5_A Putative two-component 98.0 3.2E-06 1.1E-10 77.5 4.5 110 161-300 4-115 (143)
199 4b4t_J 26S protease regulatory 98.0 0.00011 3.9E-09 78.1 16.6 181 158-363 145-356 (405)
200 2c9o_A RUVB-like 1; hexameric 98.0 3.6E-05 1.2E-09 85.5 12.8 99 264-368 297-410 (456)
201 3pxg_A Negative regulator of g 98.0 1.3E-05 4.5E-10 89.1 8.9 147 161-334 180-339 (468)
202 4b4t_L 26S protease subunit RP 98.0 0.0002 6.8E-09 77.6 17.7 180 158-362 178-388 (437)
203 2bjv_A PSP operon transcriptio 98.0 1.8E-05 6.2E-10 81.1 9.3 130 161-300 6-150 (265)
204 1in4_A RUVB, holliday junction 97.9 8.3E-05 2.8E-09 78.8 14.2 175 161-367 25-222 (334)
205 1lv7_A FTSH; alpha/beta domain 97.9 0.00019 6.4E-09 73.0 16.1 181 160-365 11-222 (257)
206 4fcw_A Chaperone protein CLPB; 97.9 3.5E-05 1.2E-09 81.1 10.9 117 162-287 18-144 (311)
207 1qvr_A CLPB protein; coiled co 97.9 2.3E-05 7.8E-10 94.3 10.1 154 161-333 170-345 (854)
208 4b4t_H 26S protease regulatory 97.9 0.0001 3.4E-09 79.6 13.9 176 161-361 209-415 (467)
209 1ofh_A ATP-dependent HSL prote 97.9 2.8E-05 9.6E-10 81.7 9.4 46 161-206 15-72 (310)
210 1ojl_A Transcriptional regulat 97.9 2E-05 6.8E-10 82.3 7.9 159 161-332 2-189 (304)
211 4b4t_M 26S protease regulatory 97.8 0.00013 4.6E-09 78.8 14.0 178 159-361 179-387 (434)
212 3rw6_A Nuclear RNA export fact 97.8 1.5E-05 5.2E-10 80.6 5.9 82 555-639 167-257 (267)
213 3ec2_A DNA replication protein 97.8 2.1E-05 7.2E-10 75.3 6.7 119 166-300 19-142 (180)
214 2gno_A DNA polymerase III, gam 97.8 0.0001 3.4E-09 76.7 12.1 148 165-333 1-152 (305)
215 4b4t_K 26S protease regulatory 97.8 0.00016 5.5E-09 78.1 13.8 179 158-361 169-379 (428)
216 2w58_A DNAI, primosome compone 97.8 7.6E-06 2.6E-10 80.1 3.2 115 169-300 37-158 (202)
217 4b4t_I 26S protease regulatory 97.8 0.00021 7.1E-09 76.3 14.3 180 158-362 179-389 (437)
218 1r6b_X CLPA protein; AAA+, N-t 97.8 0.00023 8E-09 84.6 15.8 157 161-333 186-362 (758)
219 3cf2_A TER ATPase, transitiona 97.7 0.00021 7E-09 83.4 14.2 181 158-363 201-409 (806)
220 3e4g_A ATP synthase subunit S, 97.7 1.4E-05 4.9E-10 74.8 3.4 94 550-646 53-152 (176)
221 4fs7_A Uncharacterized protein 97.7 0.00022 7.5E-09 77.7 13.0 62 579-643 156-218 (394)
222 1io0_A Tropomodulin; LRR prote 97.7 9.5E-06 3.3E-10 78.0 1.5 98 548-646 26-136 (185)
223 2ce7_A Cell division protein F 97.7 0.00036 1.2E-08 76.8 14.2 176 161-361 16-221 (476)
224 3pxi_A Negative regulator of g 97.7 6.8E-05 2.3E-09 89.0 8.9 148 161-333 180-338 (758)
225 4gt6_A Cell surface protein; l 97.6 0.00023 7.7E-09 77.6 12.2 89 550-642 79-169 (394)
226 3pxi_A Negative regulator of g 97.6 0.00046 1.6E-08 81.9 15.3 153 161-333 491-675 (758)
227 3e4g_A ATP synthase subunit S, 97.6 6.7E-05 2.3E-09 70.2 5.4 36 685-720 114-150 (176)
228 1io0_A Tropomodulin; LRR prote 97.5 3.6E-05 1.2E-09 73.9 2.9 118 527-646 34-164 (185)
229 2kjq_A DNAA-related protein; s 97.5 4.1E-05 1.4E-09 70.4 3.0 86 184-300 36-124 (149)
230 4gt6_A Cell surface protein; l 97.4 0.00074 2.5E-08 73.5 12.7 108 526-643 84-192 (394)
231 3rw6_A Nuclear RNA export fact 97.4 3.2E-05 1.1E-09 78.3 1.4 79 582-663 167-257 (267)
232 2r44_A Uncharacterized protein 97.4 0.00073 2.5E-08 71.5 11.9 152 162-334 28-199 (331)
233 2r62_A Cell division protease 97.4 6.4E-05 2.2E-09 77.1 3.3 155 160-333 10-196 (268)
234 1ypw_A Transitional endoplasmi 97.3 0.0011 3.8E-08 78.6 13.4 156 159-333 202-385 (806)
235 1ixz_A ATP-dependent metallopr 97.3 0.0016 5.6E-08 65.9 12.0 177 160-361 15-221 (254)
236 2qgz_A Helicase loader, putati 97.2 0.00019 6.5E-09 74.8 4.5 54 168-223 135-190 (308)
237 4h09_A Hypothetical leucine ri 97.1 0.0057 2E-07 65.9 15.5 106 681-797 213-318 (379)
238 1qvr_A CLPB protein; coiled co 97.1 0.0011 3.7E-08 79.6 10.6 129 162-300 559-710 (854)
239 1r6b_X CLPA protein; AAA+, N-t 97.1 0.00097 3.3E-08 79.2 10.0 127 161-300 458-607 (758)
240 1iy2_A ATP-dependent metallopr 97.1 0.002 6.9E-08 66.2 11.1 179 158-361 37-245 (278)
241 3t15_A Ribulose bisphosphate c 97.1 0.0008 2.8E-08 69.7 7.8 25 183-207 35-59 (293)
242 2x8a_A Nuclear valosin-contain 97.1 0.0022 7.4E-08 65.6 10.6 153 160-333 9-191 (274)
243 2vhj_A Ntpase P4, P4; non- hyd 97.0 0.00049 1.7E-08 70.6 4.5 69 184-273 123-193 (331)
244 1um8_A ATP-dependent CLP prote 97.0 0.0023 8E-08 68.9 10.2 45 162-206 22-94 (376)
245 3m6a_A ATP-dependent protease 96.9 0.0013 4.4E-08 74.4 8.1 161 161-333 81-266 (543)
246 2dhr_A FTSH; AAA+ protein, hex 96.9 0.0022 7.6E-08 70.9 9.4 175 158-361 28-236 (499)
247 2cvh_A DNA repair and recombin 96.8 0.0033 1.1E-07 61.9 9.3 84 184-273 20-116 (220)
248 2b8t_A Thymidine kinase; deoxy 96.7 0.001 3.6E-08 65.1 4.7 110 184-300 12-125 (223)
249 1jr3_D DNA polymerase III, del 96.7 0.01 3.4E-07 63.0 12.3 167 172-367 8-184 (343)
250 1g8p_A Magnesium-chelatase 38 96.7 0.0039 1.3E-07 66.4 9.1 44 161-206 24-67 (350)
251 3hr8_A Protein RECA; alpha and 96.6 0.0058 2E-07 64.4 9.5 84 183-273 60-150 (356)
252 3io5_A Recombination and repai 96.5 0.01 3.6E-07 60.5 10.2 81 186-273 30-122 (333)
253 2w0m_A SSO2452; RECA, SSPF, un 96.2 0.0094 3.2E-07 59.1 7.9 112 185-301 24-168 (235)
254 1v5w_A DMC1, meiotic recombina 96.1 0.019 6.6E-07 60.6 10.3 90 183-273 121-230 (343)
255 3lw7_A Adenylate kinase relate 96.1 0.033 1.1E-06 52.2 10.9 20 185-204 2-21 (179)
256 1n0w_A DNA repair protein RAD5 96.1 0.015 5.2E-07 58.0 8.9 89 184-273 24-130 (243)
257 2zr9_A Protein RECA, recombina 96.1 0.016 5.5E-07 61.2 9.3 83 184-273 61-150 (349)
258 1xp8_A RECA protein, recombina 96.0 0.019 6.6E-07 60.8 9.5 83 184-273 74-163 (366)
259 2z43_A DNA repair and recombin 96.0 0.025 8.6E-07 59.2 10.2 89 184-273 107-214 (324)
260 4gp7_A Metallophosphoesterase; 95.9 0.0071 2.4E-07 56.8 5.4 54 254-307 93-165 (171)
261 1u94_A RECA protein, recombina 95.9 0.02 6.7E-07 60.6 9.2 83 184-273 63-152 (356)
262 2i1q_A DNA repair and recombin 95.7 0.017 5.7E-07 60.6 7.4 90 183-273 97-215 (322)
263 1cr0_A DNA primase/helicase; R 95.6 0.044 1.5E-06 56.5 10.2 38 184-223 35-73 (296)
264 3upu_A ATP-dependent DNA helic 95.6 0.016 5.3E-07 64.2 7.1 105 186-301 47-165 (459)
265 4h09_A Hypothetical leucine ri 95.4 0.048 1.6E-06 58.6 10.3 79 580-662 235-315 (379)
266 1g5t_A COB(I)alamin adenosyltr 95.4 0.021 7E-07 54.2 6.0 111 185-301 29-163 (196)
267 3lda_A DNA repair protein RAD5 95.4 0.037 1.3E-06 59.4 8.8 89 184-273 178-284 (400)
268 3c8u_A Fructokinase; YP_612366 95.3 0.012 4E-07 57.4 4.5 37 170-206 8-44 (208)
269 3bh0_A DNAB-like replicative h 95.3 0.13 4.3E-06 53.6 12.5 52 184-239 68-119 (315)
270 2orw_A Thymidine kinase; TMTK, 95.3 0.003 1E-07 60.1 -0.1 106 185-300 4-112 (184)
271 1rz3_A Hypothetical protein rb 95.3 0.015 5E-07 56.3 4.8 41 166-206 3-44 (201)
272 2pze_A Cystic fibrosis transme 95.2 0.19 6.5E-06 49.4 12.9 52 254-305 140-194 (229)
273 2cbz_A Multidrug resistance-as 95.1 0.097 3.3E-06 51.8 10.4 51 255-305 138-193 (237)
274 1ypw_A Transitional endoplasmi 95.0 0.0057 2E-07 72.5 1.3 157 158-333 474-661 (806)
275 3nbx_X ATPase RAVA; AAA+ ATPas 95.0 0.015 5.1E-07 64.4 4.6 42 162-207 23-64 (500)
276 3cf2_A TER ATPase, transitiona 94.9 0.052 1.8E-06 63.3 9.0 98 157-273 473-581 (806)
277 1pzn_A RAD51, DNA repair and r 94.8 0.055 1.9E-06 57.2 8.1 90 183-273 130-242 (349)
278 1odf_A YGR205W, hypothetical 3 94.8 0.027 9.1E-07 57.8 5.4 26 181-206 28-53 (290)
279 3hws_A ATP-dependent CLP prote 94.8 0.014 5E-07 62.3 3.6 45 162-206 16-73 (363)
280 4akg_A Glutathione S-transfera 94.8 0.28 9.7E-06 64.8 16.0 137 185-333 1268-1431(2695)
281 3jvv_A Twitching mobility prot 94.7 0.025 8.4E-07 59.8 5.2 113 184-305 123-235 (356)
282 1qhx_A CPT, protein (chloramph 94.6 0.016 5.6E-07 54.6 3.1 22 185-206 4-25 (178)
283 1vma_A Cell division protein F 94.6 0.1 3.5E-06 53.7 9.2 87 184-273 104-197 (306)
284 2px0_A Flagellar biosynthesis 94.6 0.07 2.4E-06 54.8 7.9 85 184-271 105-191 (296)
285 1ly1_A Polynucleotide kinase; 94.5 0.019 6.4E-07 54.2 3.3 22 185-206 3-24 (181)
286 3kb2_A SPBC2 prophage-derived 94.5 0.018 6E-07 54.0 3.0 22 185-206 2-23 (173)
287 3dm5_A SRP54, signal recogniti 94.5 0.16 5.4E-06 54.9 10.8 24 183-206 99-122 (443)
288 1zp6_A Hypothetical protein AT 94.5 0.021 7.2E-07 54.5 3.7 24 184-207 9-32 (191)
289 1ny5_A Transcriptional regulat 94.5 0.12 4E-06 55.6 9.8 132 162-300 138-281 (387)
290 4a1f_A DNAB helicase, replicat 94.4 0.13 4.4E-06 53.7 9.5 53 184-240 46-98 (338)
291 3ice_A Transcription terminati 94.3 0.031 1.1E-06 58.6 4.6 96 172-273 163-272 (422)
292 3dzd_A Transcriptional regulat 94.3 0.035 1.2E-06 59.2 5.1 119 161-288 129-248 (368)
293 1sky_E F1-ATPase, F1-ATP synth 94.3 0.1 3.5E-06 56.5 8.7 99 173-273 141-256 (473)
294 1j8m_F SRP54, signal recogniti 94.3 0.22 7.7E-06 51.0 11.0 88 184-273 98-191 (297)
295 2dr3_A UPF0273 protein PH0284; 94.2 0.15 5E-06 50.7 9.5 48 184-235 23-70 (247)
296 1ex7_A Guanylate kinase; subst 94.2 0.02 6.9E-07 54.2 2.6 22 185-206 2-23 (186)
297 3vaa_A Shikimate kinase, SK; s 94.2 0.023 7.8E-07 54.8 3.1 23 184-206 25-47 (199)
298 1kgd_A CASK, peripheral plasma 94.1 0.023 7.8E-07 53.8 3.0 22 185-206 6-27 (180)
299 1kag_A SKI, shikimate kinase I 94.1 0.022 7.6E-07 53.3 2.7 22 185-206 5-26 (173)
300 3trf_A Shikimate kinase, SK; a 94.0 0.023 7.7E-07 54.0 2.7 23 184-206 5-27 (185)
301 3uie_A Adenylyl-sulfate kinase 94.0 0.033 1.1E-06 53.7 3.8 23 184-206 25-47 (200)
302 3e70_C DPA, signal recognition 94.0 0.28 9.5E-06 51.1 11.1 24 183-206 128-151 (328)
303 3cmu_A Protein RECA, recombina 94.0 0.092 3.2E-06 66.9 8.6 83 183-272 1426-1515(2050)
304 3kl4_A SRP54, signal recogniti 94.0 0.13 4.5E-06 55.5 8.8 87 183-272 96-189 (433)
305 3e1s_A Exodeoxyribonuclease V, 93.9 0.21 7.3E-06 56.4 10.9 104 185-299 205-314 (574)
306 1knq_A Gluconate kinase; ALFA/ 93.9 0.038 1.3E-06 51.9 4.0 23 184-206 8-30 (175)
307 1nks_A Adenylate kinase; therm 93.9 0.028 9.7E-07 53.6 3.2 22 185-206 2-23 (194)
308 2rhm_A Putative kinase; P-loop 93.9 0.031 1.1E-06 53.4 3.4 23 184-206 5-27 (193)
309 2ffh_A Protein (FFH); SRP54, s 93.9 0.25 8.5E-06 53.2 10.7 23 184-206 98-120 (425)
310 2ga8_A Hypothetical 39.9 kDa p 93.8 0.046 1.6E-06 56.9 4.7 42 165-206 3-46 (359)
311 3fwy_A Light-independent proto 93.7 0.035 1.2E-06 57.5 3.7 40 183-224 47-86 (314)
312 1gvn_B Zeta; postsegregational 93.7 0.051 1.8E-06 55.6 4.9 24 183-206 32-55 (287)
313 2bdt_A BH3686; alpha-beta prot 93.7 0.037 1.3E-06 52.7 3.6 22 185-206 3-24 (189)
314 3tlx_A Adenylate kinase 2; str 93.7 0.045 1.5E-06 54.6 4.3 36 171-206 16-51 (243)
315 1ye8_A Protein THEP1, hypothet 93.7 0.035 1.2E-06 52.3 3.3 68 259-327 96-170 (178)
316 3t61_A Gluconokinase; PSI-biol 93.6 0.027 9.3E-07 54.4 2.5 23 184-206 18-40 (202)
317 4eun_A Thermoresistant glucoki 93.6 0.036 1.2E-06 53.4 3.3 23 184-206 29-51 (200)
318 1kht_A Adenylate kinase; phosp 93.6 0.034 1.1E-06 53.0 3.1 22 185-206 4-25 (192)
319 3llm_A ATP-dependent RNA helic 93.6 0.34 1.2E-05 47.8 10.6 99 170-273 66-187 (235)
320 3tr0_A Guanylate kinase, GMP k 93.6 0.036 1.2E-06 53.5 3.3 22 185-206 8-29 (205)
321 3tau_A Guanylate kinase, GMP k 93.6 0.036 1.2E-06 53.8 3.3 24 184-207 8-31 (208)
322 3iij_A Coilin-interacting nucl 93.5 0.028 9.7E-07 53.1 2.3 23 184-206 11-33 (180)
323 2ze6_A Isopentenyl transferase 93.5 0.038 1.3E-06 55.5 3.3 22 185-206 2-23 (253)
324 2hf9_A Probable hydrogenase ni 93.4 0.052 1.8E-06 53.4 4.2 37 169-207 25-61 (226)
325 1tev_A UMP-CMP kinase; ploop, 93.4 0.04 1.4E-06 52.6 3.3 23 184-206 3-25 (196)
326 2xxa_A Signal recognition part 93.4 0.3 1E-05 53.0 10.5 39 183-223 99-138 (433)
327 3tqc_A Pantothenate kinase; bi 93.4 0.06 2E-06 55.8 4.7 43 164-206 70-114 (321)
328 2qt1_A Nicotinamide riboside k 93.4 0.047 1.6E-06 52.9 3.8 23 184-206 21-43 (207)
329 2q6t_A DNAB replication FORK h 93.4 0.34 1.2E-05 53.0 11.1 66 170-239 187-252 (444)
330 2jaq_A Deoxyguanosine kinase; 93.4 0.038 1.3E-06 53.3 3.1 21 186-206 2-22 (205)
331 2qor_A Guanylate kinase; phosp 93.3 0.032 1.1E-06 54.0 2.5 24 183-206 11-34 (204)
332 1jjv_A Dephospho-COA kinase; P 93.3 0.047 1.6E-06 52.8 3.6 22 185-206 3-24 (206)
333 3a00_A Guanylate kinase, GMP k 93.3 0.032 1.1E-06 53.1 2.3 22 185-206 2-23 (186)
334 1zuh_A Shikimate kinase; alpha 93.3 0.042 1.4E-06 51.2 3.1 23 184-206 7-29 (168)
335 3asz_A Uridine kinase; cytidin 93.3 0.047 1.6E-06 53.0 3.6 23 184-206 6-28 (211)
336 3umf_A Adenylate kinase; rossm 93.2 0.047 1.6E-06 53.1 3.5 24 183-206 28-51 (217)
337 1y63_A LMAJ004144AAA protein; 93.2 0.043 1.5E-06 52.1 3.1 23 184-206 10-32 (184)
338 1ukz_A Uridylate kinase; trans 93.2 0.049 1.7E-06 52.5 3.6 24 183-206 14-37 (203)
339 3a4m_A L-seryl-tRNA(SEC) kinas 93.2 0.046 1.6E-06 55.2 3.5 23 184-206 4-26 (260)
340 2if2_A Dephospho-COA kinase; a 93.2 0.04 1.4E-06 53.2 2.9 21 186-206 3-23 (204)
341 2r6a_A DNAB helicase, replicat 93.2 0.44 1.5E-05 52.3 11.6 51 184-237 203-253 (454)
342 1uf9_A TT1252 protein; P-loop, 93.2 0.049 1.7E-06 52.5 3.5 24 183-206 7-30 (203)
343 1via_A Shikimate kinase; struc 93.1 0.041 1.4E-06 51.7 2.8 21 186-206 6-26 (175)
344 3cm0_A Adenylate kinase; ATP-b 93.1 0.052 1.8E-06 51.5 3.6 23 184-206 4-26 (186)
345 1pgv_A TMD-1, tropomodulin TMD 93.1 0.016 5.6E-07 55.1 -0.1 10 762-771 157-166 (197)
346 2j41_A Guanylate kinase; GMP, 93.1 0.048 1.6E-06 52.7 3.3 22 185-206 7-28 (207)
347 2j37_W Signal recognition part 93.1 0.58 2E-05 51.6 12.3 24 183-206 100-123 (504)
348 2p5t_B PEZT; postsegregational 93.1 0.049 1.7E-06 54.7 3.5 37 170-206 15-54 (253)
349 1cke_A CK, MSSA, protein (cyti 93.1 0.044 1.5E-06 54.0 3.1 22 185-206 6-27 (227)
350 2yvu_A Probable adenylyl-sulfa 93.1 0.052 1.8E-06 51.5 3.5 24 183-206 12-35 (186)
351 2c95_A Adenylate kinase 1; tra 93.1 0.04 1.4E-06 52.7 2.7 23 184-206 9-31 (196)
352 2wsm_A Hydrogenase expression/ 93.1 0.058 2E-06 52.8 3.9 41 165-207 13-53 (221)
353 1uj2_A Uridine-cytidine kinase 93.0 0.05 1.7E-06 54.6 3.5 24 183-206 21-44 (252)
354 1lvg_A Guanylate kinase, GMP k 93.0 0.038 1.3E-06 53.2 2.4 22 185-206 5-26 (198)
355 3p32_A Probable GTPase RV1496/ 93.0 0.079 2.7E-06 56.2 5.1 37 170-206 65-101 (355)
356 2plr_A DTMP kinase, probable t 93.0 0.052 1.8E-06 52.7 3.5 22 185-206 5-26 (213)
357 3ney_A 55 kDa erythrocyte memb 93.0 0.051 1.7E-06 51.9 3.1 23 184-206 19-41 (197)
358 1tue_A Replication protein E1; 92.9 0.06 2.1E-06 51.2 3.5 36 170-206 45-80 (212)
359 2bbw_A Adenylate kinase 4, AK4 92.8 0.053 1.8E-06 54.2 3.3 23 184-206 27-49 (246)
360 1qf9_A UMP/CMP kinase, protein 92.8 0.054 1.9E-06 51.6 3.2 23 184-206 6-28 (194)
361 2cdn_A Adenylate kinase; phosp 92.8 0.052 1.8E-06 52.3 3.1 23 184-206 20-42 (201)
362 1g41_A Heat shock protein HSLU 92.8 0.057 1.9E-06 58.4 3.6 46 161-206 15-72 (444)
363 2pt5_A Shikimate kinase, SK; a 92.8 0.054 1.9E-06 50.3 3.1 21 186-206 2-22 (168)
364 1fx0_B ATP synthase beta chain 92.7 0.27 9.3E-06 53.3 8.8 100 172-273 154-277 (498)
365 2ck3_D ATP synthase subunit be 92.7 0.35 1.2E-05 52.2 9.6 100 172-273 142-264 (482)
366 2iyv_A Shikimate kinase, SK; t 92.7 0.051 1.8E-06 51.4 2.8 21 186-206 4-24 (184)
367 2bwj_A Adenylate kinase 5; pho 92.7 0.052 1.8E-06 52.1 2.9 22 185-206 13-34 (199)
368 1xjc_A MOBB protein homolog; s 92.7 0.057 1.9E-06 50.0 3.0 23 184-206 4-26 (169)
369 1e6c_A Shikimate kinase; phosp 92.7 0.047 1.6E-06 51.0 2.5 22 185-206 3-24 (173)
370 1znw_A Guanylate kinase, GMP k 92.6 0.061 2.1E-06 52.1 3.3 22 185-206 21-42 (207)
371 3aez_A Pantothenate kinase; tr 92.6 0.069 2.3E-06 55.3 3.8 24 183-206 89-112 (312)
372 2yhs_A FTSY, cell division pro 92.6 0.29 1E-05 53.4 8.8 42 183-227 292-333 (503)
373 1htw_A HI0065; nucleotide-bind 92.6 0.073 2.5E-06 48.9 3.6 23 184-206 33-55 (158)
374 1ls1_A Signal recognition part 92.6 0.4 1.4E-05 49.1 9.5 85 184-271 98-189 (295)
375 2pbr_A DTMP kinase, thymidylat 92.6 0.059 2E-06 51.4 3.1 21 186-206 2-22 (195)
376 2grj_A Dephospho-COA kinase; T 92.5 0.072 2.5E-06 50.8 3.6 24 183-206 11-34 (192)
377 2z0h_A DTMP kinase, thymidylat 92.5 0.15 5.3E-06 48.6 6.0 21 186-206 2-22 (197)
378 2vli_A Antibiotic resistance p 92.4 0.042 1.5E-06 51.9 1.8 23 184-206 5-27 (183)
379 4a74_A DNA repair and recombin 92.4 0.16 5.6E-06 49.8 6.2 46 184-229 25-74 (231)
380 2jeo_A Uridine-cytidine kinase 92.4 0.079 2.7E-06 52.9 3.8 23 184-206 25-47 (245)
381 1zu4_A FTSY; GTPase, signal re 92.3 0.2 6.7E-06 52.0 6.9 24 183-206 104-127 (320)
382 1nn5_A Similar to deoxythymidy 92.3 0.09 3.1E-06 51.1 4.1 23 184-206 9-31 (215)
383 3rfe_A Platelet glycoprotein I 92.2 0.22 7.5E-06 43.9 6.1 34 586-620 32-66 (130)
384 1z6g_A Guanylate kinase; struc 92.2 0.061 2.1E-06 52.6 2.7 22 185-206 24-45 (218)
385 1aky_A Adenylate kinase; ATP:A 92.2 0.065 2.2E-06 52.5 2.9 23 184-206 4-26 (220)
386 3cmu_A Protein RECA, recombina 92.2 0.33 1.1E-05 62.0 9.7 102 165-273 363-472 (2050)
387 4e22_A Cytidylate kinase; P-lo 92.2 0.073 2.5E-06 53.4 3.3 23 184-206 27-49 (252)
388 3fb4_A Adenylate kinase; psych 92.1 0.072 2.4E-06 51.9 3.1 21 186-206 2-22 (216)
389 2pt7_A CAG-ALFA; ATPase, prote 92.1 0.34 1.2E-05 50.6 8.4 105 185-302 172-276 (330)
390 3b85_A Phosphate starvation-in 92.1 0.099 3.4E-06 50.5 4.0 22 185-206 23-44 (208)
391 2i3b_A HCR-ntpase, human cance 92.1 0.067 2.3E-06 50.9 2.7 22 186-207 3-24 (189)
392 2wwf_A Thymidilate kinase, put 92.1 0.07 2.4E-06 51.8 3.0 23 184-206 10-32 (212)
393 1zd8_A GTP:AMP phosphotransfer 92.0 0.071 2.4E-06 52.5 2.9 23 184-206 7-29 (227)
394 1s96_A Guanylate kinase, GMP k 92.0 0.082 2.8E-06 51.6 3.3 23 184-206 16-38 (219)
395 3dl0_A Adenylate kinase; phosp 92.0 0.076 2.6E-06 51.8 3.1 21 186-206 2-22 (216)
396 3cmw_A Protein RECA, recombina 92.0 0.28 9.6E-06 61.8 8.7 83 184-273 383-472 (1706)
397 2ewv_A Twitching motility prot 92.0 0.25 8.5E-06 52.6 7.3 110 184-303 136-246 (372)
398 2pez_A Bifunctional 3'-phospho 92.0 0.089 3E-06 49.5 3.5 23 184-206 5-27 (179)
399 1rj9_A FTSY, signal recognitio 91.9 0.078 2.7E-06 54.6 3.2 23 184-206 102-124 (304)
400 1m7g_A Adenylylsulfate kinase; 91.9 0.092 3.2E-06 51.0 3.6 23 184-206 25-47 (211)
401 2f6r_A COA synthase, bifunctio 91.8 0.092 3.1E-06 53.6 3.6 23 183-205 74-96 (281)
402 2v54_A DTMP kinase, thymidylat 91.8 0.083 2.8E-06 50.9 3.1 22 185-206 5-26 (204)
403 1xx6_A Thymidine kinase; NESG, 91.7 0.056 1.9E-06 51.4 1.7 107 184-300 8-117 (191)
404 3b9q_A Chloroplast SRP recepto 91.7 0.1 3.6E-06 53.7 3.8 23 184-206 100-122 (302)
405 2ehv_A Hypothetical protein PH 91.6 0.091 3.1E-06 52.5 3.3 23 184-206 30-52 (251)
406 1zak_A Adenylate kinase; ATP:A 91.6 0.069 2.4E-06 52.4 2.3 23 184-206 5-27 (222)
407 3l0o_A Transcription terminati 91.5 0.051 1.7E-06 56.8 1.3 53 171-225 163-216 (427)
408 1vht_A Dephospho-COA kinase; s 91.5 0.11 3.7E-06 50.8 3.6 23 184-206 4-26 (218)
409 2j9r_A Thymidine kinase; TK1, 91.5 0.12 4.1E-06 49.7 3.7 107 184-300 28-137 (214)
410 2wji_A Ferrous iron transport 91.4 0.13 4.4E-06 47.5 3.9 23 185-207 4-26 (165)
411 1gtv_A TMK, thymidylate kinase 91.4 0.051 1.8E-06 52.9 1.1 21 186-206 2-22 (214)
412 3tif_A Uncharacterized ABC tra 91.4 0.1 3.4E-06 51.7 3.3 22 185-206 32-53 (235)
413 1q57_A DNA primase/helicase; d 91.4 0.7 2.4E-05 51.5 10.6 53 184-239 242-294 (503)
414 3nwj_A ATSK2; P loop, shikimat 91.4 0.08 2.7E-06 52.8 2.5 22 185-206 49-70 (250)
415 3hjn_A DTMP kinase, thymidylat 91.4 0.32 1.1E-05 46.5 6.7 49 186-236 2-50 (197)
416 2zej_A Dardarin, leucine-rich 91.3 0.1 3.4E-06 49.4 3.1 22 186-207 4-25 (184)
417 3k1j_A LON protease, ATP-depen 91.3 0.099 3.4E-06 59.9 3.6 43 161-207 41-83 (604)
418 2pcj_A ABC transporter, lipopr 91.3 0.1 3.4E-06 51.2 3.1 22 185-206 31-52 (224)
419 3sr0_A Adenylate kinase; phosp 91.3 0.1 3.5E-06 50.3 3.1 74 186-273 2-85 (206)
420 1u0j_A DNA replication protein 91.2 0.17 5.8E-06 50.5 4.6 34 173-206 93-126 (267)
421 2f1r_A Molybdopterin-guanine d 91.2 0.06 2.1E-06 50.2 1.3 22 185-206 3-24 (171)
422 3d3q_A TRNA delta(2)-isopenten 91.1 0.11 3.8E-06 54.0 3.3 22 185-206 8-29 (340)
423 3cmw_A Protein RECA, recombina 91.1 0.33 1.1E-05 61.1 8.1 82 184-272 1431-1519(1706)
424 2onk_A Molybdate/tungstate ABC 91.1 0.11 3.9E-06 51.4 3.3 22 185-206 25-46 (240)
425 3lnc_A Guanylate kinase, GMP k 91.1 0.076 2.6E-06 52.4 2.1 21 185-205 28-48 (231)
426 1yrb_A ATP(GTP)binding protein 91.1 0.13 4.3E-06 51.9 3.7 24 183-206 13-36 (262)
427 1np6_A Molybdopterin-guanine d 91.1 0.11 3.8E-06 48.5 3.0 23 184-206 6-28 (174)
428 1fzq_A ADP-ribosylation factor 91.1 0.16 5.3E-06 47.9 4.1 25 183-207 15-39 (181)
429 3a8t_A Adenylate isopentenyltr 91.1 0.13 4.5E-06 53.2 3.8 23 184-206 40-62 (339)
430 1sq5_A Pantothenate kinase; P- 91.1 0.12 4.3E-06 53.4 3.7 24 183-206 79-102 (308)
431 3ake_A Cytidylate kinase; CMP 91.1 0.11 3.7E-06 50.2 3.1 21 186-206 4-24 (208)
432 2xb4_A Adenylate kinase; ATP-b 91.0 0.11 3.7E-06 51.0 3.1 21 186-206 2-22 (223)
433 2r9v_A ATP synthase subunit al 91.0 0.3 1E-05 53.1 6.6 97 172-273 164-278 (515)
434 3r20_A Cytidylate kinase; stru 91.0 0.12 4.2E-06 50.7 3.3 23 184-206 9-31 (233)
435 3be4_A Adenylate kinase; malar 91.0 0.11 3.7E-06 50.8 2.9 22 185-206 6-27 (217)
436 1e4v_A Adenylate kinase; trans 90.9 0.11 3.7E-06 50.6 3.0 21 186-206 2-22 (214)
437 3bgw_A DNAB-like replicative h 90.9 0.96 3.3E-05 49.2 10.8 52 184-239 197-248 (444)
438 3gmt_A Adenylate kinase; ssgci 90.9 0.45 1.5E-05 46.4 7.2 22 185-206 9-30 (230)
439 3crm_A TRNA delta(2)-isopenten 90.9 0.12 4.1E-06 53.3 3.3 22 185-206 6-27 (323)
440 3gfo_A Cobalt import ATP-bindi 90.9 0.12 4.1E-06 52.4 3.2 22 185-206 35-56 (275)
441 1b0u_A Histidine permease; ABC 90.8 0.12 4.2E-06 52.0 3.2 23 184-206 32-54 (262)
442 2og2_A Putative signal recogni 90.8 0.14 4.8E-06 53.9 3.8 23 184-206 157-179 (359)
443 1oix_A RAS-related protein RAB 90.7 0.13 4.3E-06 49.0 3.2 24 184-207 29-52 (191)
444 3exa_A TRNA delta(2)-isopenten 90.7 0.14 4.6E-06 52.4 3.5 23 184-206 3-25 (322)
445 1svm_A Large T antigen; AAA+ f 90.7 0.17 5.8E-06 53.7 4.4 24 183-206 168-191 (377)
446 1ji0_A ABC transporter; ATP bi 90.7 0.13 4.4E-06 51.0 3.3 22 185-206 33-54 (240)
447 2dyk_A GTP-binding protein; GT 90.6 0.15 5E-06 46.6 3.5 23 185-207 2-24 (161)
448 1pgv_A TMD-1, tropomodulin TMD 90.6 0.034 1.2E-06 52.9 -1.0 64 681-744 66-133 (197)
449 3b5x_A Lipid A export ATP-bind 90.6 0.98 3.4E-05 51.3 10.9 23 184-206 369-391 (582)
450 1sgw_A Putative ABC transporte 90.6 0.11 3.9E-06 50.3 2.7 22 185-206 36-57 (214)
451 3rfe_A Platelet glycoprotein I 90.6 0.34 1.2E-05 42.7 5.6 55 589-646 12-68 (130)
452 2olj_A Amino acid ABC transpor 90.6 0.13 4.5E-06 51.7 3.2 23 184-206 50-72 (263)
453 1ak2_A Adenylate kinase isoenz 90.6 0.13 4.3E-06 50.9 3.1 22 185-206 17-38 (233)
454 1g6h_A High-affinity branched- 90.5 0.13 4.6E-06 51.5 3.3 22 185-206 34-55 (257)
455 4g1u_C Hemin import ATP-bindin 90.5 0.13 4.6E-06 51.8 3.2 22 185-206 38-59 (266)
456 2ff7_A Alpha-hemolysin translo 90.4 0.14 4.8E-06 51.0 3.3 22 185-206 36-57 (247)
457 2d2e_A SUFC protein; ABC-ATPas 90.4 0.14 4.9E-06 51.1 3.3 22 185-206 30-51 (250)
458 1mv5_A LMRA, multidrug resista 90.4 0.15 5.2E-06 50.7 3.5 23 184-206 28-50 (243)
459 1ltq_A Polynucleotide kinase; 90.4 0.14 4.7E-06 52.9 3.3 22 185-206 3-24 (301)
460 2f9l_A RAB11B, member RAS onco 90.3 0.14 4.7E-06 49.1 3.1 24 184-207 5-28 (199)
461 2wjg_A FEOB, ferrous iron tran 90.3 0.18 6.3E-06 47.5 3.9 24 184-207 7-30 (188)
462 1vpl_A ABC transporter, ATP-bi 90.3 0.14 4.9E-06 51.2 3.2 22 185-206 42-63 (256)
463 2qmh_A HPR kinase/phosphorylas 90.3 0.16 5.5E-06 48.0 3.3 24 184-207 34-57 (205)
464 2zu0_C Probable ATP-dependent 90.3 0.15 5E-06 51.5 3.3 22 185-206 47-68 (267)
465 1tq4_A IIGP1, interferon-induc 90.3 0.15 5.1E-06 54.8 3.5 35 172-206 57-91 (413)
466 4eaq_A DTMP kinase, thymidylat 90.2 0.27 9.2E-06 48.3 5.1 24 184-207 26-49 (229)
467 3foz_A TRNA delta(2)-isopenten 90.1 0.16 5.4E-06 51.8 3.3 23 184-206 10-32 (316)
468 2qi9_C Vitamin B12 import ATP- 90.1 0.15 5.2E-06 50.8 3.2 22 185-206 27-48 (249)
469 2ghi_A Transport protein; mult 90.1 0.15 5.2E-06 51.2 3.3 22 185-206 47-68 (260)
470 2ixe_A Antigen peptide transpo 90.1 0.15 5.2E-06 51.5 3.3 23 184-206 45-67 (271)
471 3vkw_A Replicase large subunit 90.0 0.8 2.7E-05 49.2 8.9 103 182-299 159-268 (446)
472 2r8r_A Sensor protein; KDPD, P 90.0 0.35 1.2E-05 46.8 5.6 104 185-301 7-127 (228)
473 2qm8_A GTPase/ATPase; G protei 90.0 0.29 9.8E-06 51.3 5.4 35 172-206 43-77 (337)
474 2nzj_A GTP-binding protein REM 90.0 0.17 5.8E-06 47.0 3.3 24 184-207 4-27 (175)
475 2yz2_A Putative ABC transporte 89.9 0.16 5.6E-06 51.2 3.3 22 185-206 34-55 (266)
476 3thx_A DNA mismatch repair pro 89.9 0.64 2.2E-05 55.4 8.8 48 260-307 739-791 (934)
477 2nq2_C Hypothetical ABC transp 89.8 0.16 5.6E-06 50.7 3.2 22 185-206 32-53 (253)
478 2ihy_A ABC transporter, ATP-bi 89.8 0.16 5.6E-06 51.5 3.2 22 185-206 48-69 (279)
479 2qe7_A ATP synthase subunit al 89.8 0.4 1.4E-05 52.1 6.3 97 172-273 151-265 (502)
480 2v9p_A Replication protein E1; 89.8 0.17 5.7E-06 51.9 3.3 23 184-206 126-148 (305)
481 3zvl_A Bifunctional polynucleo 89.8 0.16 5.3E-06 55.2 3.2 24 183-206 257-280 (416)
482 2fz4_A DNA repair protein RAD2 89.8 1 3.5E-05 44.4 9.0 102 187-298 111-226 (237)
483 2ce2_X GTPase HRAS; signaling 89.7 0.16 5.5E-06 46.5 2.9 22 186-207 5-26 (166)
484 2ck3_A ATP synthase subunit al 89.7 0.4 1.4E-05 52.2 6.3 101 172-273 151-273 (510)
485 3vr4_D V-type sodium ATPase su 89.7 0.27 9.1E-06 52.8 4.8 99 172-273 140-259 (465)
486 1z2a_A RAS-related protein RAB 89.6 0.17 5.8E-06 46.6 3.0 24 184-207 5-28 (168)
487 1nlf_A Regulatory protein REPA 89.6 0.17 5.8E-06 51.5 3.2 22 185-206 31-52 (279)
488 2p67_A LAO/AO transport system 89.6 0.3 1E-05 51.3 5.2 35 172-206 44-78 (341)
489 2zts_A Putative uncharacterize 89.6 0.35 1.2E-05 48.0 5.5 49 184-235 30-78 (251)
490 2eyu_A Twitching motility prot 89.5 0.22 7.4E-06 50.1 3.8 111 184-304 25-136 (261)
491 4gzl_A RAS-related C3 botulinu 89.5 0.19 6.6E-06 48.3 3.4 24 184-207 30-53 (204)
492 1tf7_A KAIC; homohexamer, hexa 89.4 0.28 9.7E-06 55.0 5.1 112 184-301 281-417 (525)
493 2gj8_A MNME, tRNA modification 89.4 0.18 6.3E-06 46.9 3.0 23 185-207 5-27 (172)
494 3q72_A GTP-binding protein RAD 89.3 0.18 6E-06 46.4 2.8 22 186-207 4-25 (166)
495 3gqb_B V-type ATP synthase bet 89.3 0.26 8.8E-06 52.9 4.3 101 172-273 136-262 (464)
496 3q85_A GTP-binding protein REM 89.3 0.25 8.6E-06 45.5 3.9 22 185-206 3-24 (169)
497 3end_A Light-independent proto 89.3 0.4 1.4E-05 49.5 5.8 42 183-226 40-81 (307)
498 3con_A GTPase NRAS; structural 89.2 0.19 6.5E-06 47.5 3.0 23 185-207 22-44 (190)
499 3sop_A Neuronal-specific septi 89.1 0.19 6.6E-06 50.7 3.1 21 186-206 4-24 (270)
500 4edh_A DTMP kinase, thymidylat 89.1 0.59 2E-05 45.2 6.4 24 184-207 6-29 (213)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=4.1e-48 Score=444.69 Aligned_cols=315 Identities=18% Similarity=0.149 Sum_probs=256.4
Q ss_pred ccccccHHHHHHHHhcc-CCCeEEEEEEcCCCCcHHHHHHHHhc--ChhhhcccCceEEEEeCCcc--CHHHHHHHHHHH
Q 003086 164 VGLEGDTRKIKDWLFEA-EEGILAIGVVGMGGLGKTTIAQKVFN--DREIENWFERRMWVSVSQTF--TEEQIMRSMLRN 238 (849)
Q Consensus 164 vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~~GiGKTtLa~~v~~--~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~ 238 (849)
|||++++++|.++|... +...++|+|+||||+||||||+++|+ +.+++.+|+.++||++++.+ ++..++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 59999999999999775 34689999999999999999999998 67899999999999999885 899999999999
Q ss_pred hcCCCC--------CCCHHHHHHHHHHHhcCc-cEEEEEcCCCccCHHHHHHHHhcCCCCCCceEEEEecchhhhhhccc
Q 003086 239 LGDASA--------GDDRGELLRKINQYLLGK-RYLIVMDDVWGEDLAWWRRIYEGLPKGKGSSIIITTRNGKVSQKMGV 309 (849)
Q Consensus 239 l~~~~~--------~~~~~~~~~~l~~~l~~~-~~LlVlDdv~~~~~~~~~~l~~~l~~~~~s~ilvTtr~~~v~~~~~~ 309 (849)
++.... ..+.+.+...+++.|.++ |+||||||||+ ...+ .+ +...||+||||||+..++..++.
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~--~~~~-~~----~~~~gs~ilvTTR~~~v~~~~~~ 283 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQ--EETI-RW----AQELRLRCLVTTRDVEISNAASQ 283 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECC--HHHH-HH----HHHTTCEEEEEESBGGGGGGCCS
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCC--chhh-cc----cccCCCEEEEEcCCHHHHHHcCC
Confidence 986521 224567789999999996 99999999999 4433 11 12269999999999999987763
Q ss_pred cccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHhhhhhcCCCChHHHHHHHHhhh
Q 003086 310 KKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVGGMMLYKPPTYNEWRRTADNFR 389 (849)
Q Consensus 310 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l~~~~~~~~~w~~~~~~~~ 389 (849)
.. ..|+|++|+.+|||+||.+.+|... ..+.+.+++++|+++|+|+||||+++|+.|+.+. .+|...+.+..
T Consensus 284 ~~-~~~~l~~L~~~ea~~Lf~~~a~~~~----~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~---w~~~~~l~~~l 355 (549)
T 2a5y_B 284 TC-EFIEVTSLEIDECYDFLEAYGMPMP----VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT---FEKMAQLNNKL 355 (549)
T ss_dssp CE-EEEECCCCCHHHHHHHHHHTSCCCC------CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS---HHHHHHHHHHH
T ss_pred CC-eEEECCCCCHHHHHHHHHHHhcCCC----CchhHHHHHHHHHHHhCCChHHHHHHHHHhccch---HHHHHHhHHHh
Confidence 32 5799999999999999999987542 2467888999999999999999999999997651 23333333322
Q ss_pred hhhccCCchHHHHHHHhhhCCChhhHHHHH-----------HhccCCCCccccHHHHHHHhHhc--CCCcCCC-CCCHHH
Q 003086 390 DELAENDDSVMASLQLSYDELPPYLKSCFL-----------SFSVYPEDCVIRKEQLVYWWIGE--GFVPQRN-GRSSIE 455 (849)
Q Consensus 390 ~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl-----------~~s~fp~~~~i~~~~li~~wia~--g~i~~~~-~~~~e~ 455 (849)
+.. ....+..++.+||++||+++|.||+ |||+||+++.|+ +.+|+|+ ||+.... +.+.++
T Consensus 356 ~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~ 429 (549)
T 2a5y_B 356 ESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDE 429 (549)
T ss_dssp HHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHH
T ss_pred hcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHH
Confidence 221 3567888999999999999999999 999999999999 8999999 9998765 677888
Q ss_pred HHHHHHHhhhhccceEEeccccCCceeeeeecHHHHHHHHHHhhcccc
Q 003086 456 AGEDCFSGLTNRCLVEVVDKAYNKMISTCKIHDMVRDLVIRVAEEDAF 503 (849)
Q Consensus 456 ~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~Hdlv~~~~~~~~~~e~~ 503 (849)
+++ ||++|+++||++....+ ...+|+|||+||++|++++.++++
T Consensus 430 ~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 430 VAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 888 99999999999987632 446799999999999998876653
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=2e-39 Score=374.09 Aligned_cols=285 Identities=18% Similarity=0.213 Sum_probs=232.6
Q ss_pred ccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCc-eEEEEeCCccCHHHHHHHHHHHhc
Q 003086 162 LVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFER-RMWVSVSQTFTEEQIMRSMLRNLG 240 (849)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~~~l~ 240 (849)
..|||++++++|.++|...+ +.++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..|++.++
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 35999999999999998643 4789999999999999999999988788999997 899999999999888888887543
Q ss_pred CCC---C---C------CCHHHHHHHHHHHh---cCccEEEEEcCCCccCHHHHHHHHhcCCCCCCceEEEEecchhhhh
Q 003086 241 DAS---A---G------DDRGELLRKINQYL---LGKRYLIVMDDVWGEDLAWWRRIYEGLPKGKGSSIIITTRNGKVSQ 305 (849)
Q Consensus 241 ~~~---~---~------~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~s~ilvTtr~~~v~~ 305 (849)
... . . .+.+.+.+.+++.| .++|+||||||||+ .+.|+.+. .||+||||||+..++.
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe~f~------pGSRILVTTRd~~Va~ 279 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAFN------LSCKILLTTRFKQVTD 279 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHHHHHH------SSCCEEEECSCSHHHH
T ss_pred hcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHHHhhC------CCeEEEEeccChHHHH
Confidence 211 1 1 12345566777766 68999999999999 77777652 6899999999999886
Q ss_pred hccccccccccCC------CCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHhhhhhcCCCChH
Q 003086 306 KMGVKKARMHFPK------FLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVGGMMLYKPPTYN 379 (849)
Q Consensus 306 ~~~~~~~~~~~l~------~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l~~~~~~~~ 379 (849)
.+... ..++++ +|+.+|||+||.+.. ... ..++..+| |+|+||||+++|+.|+.+..+.+
T Consensus 280 ~l~g~--~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~--------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~e 345 (1221)
T 1vt4_I 280 FLSAA--TTTHISLDHHSMTLTPDEVKSLLLKYL-DCR--------PQDLPREV---LTTNPRRLSIIAESIRDGLATWD 345 (1221)
T ss_dssp HHHHH--SSCEEEECSSSSCCCHHHHHHHHHHHH-CCC--------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHH
T ss_pred hcCCC--eEEEecCccccCCcCHHHHHHHHHHHc-CCC--------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHH
Confidence 54432 245666 899999999999984 211 12333444 99999999999999998865688
Q ss_pred HHHHHHHhhhhhhccCCchHHHHHHHhhhCCChhh-HHHHHHhccCCCCccccHHHHHHHhHhcCCCcCCCCCCHHHHHH
Q 003086 380 EWRRTADNFRDELAENDDSVMASLQLSYDELPPYL-KSCFLSFSVYPEDCVIRKEQLVYWWIGEGFVPQRNGRSSIEAGE 458 (849)
Q Consensus 380 ~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~-k~cfl~~s~fp~~~~i~~~~li~~wia~g~i~~~~~~~~e~~~~ 458 (849)
+|... ....+..+|.+||+.||++. |.||+|||+||+++.|+++.++.+|+++| ++.++
T Consensus 346 eW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedAe 405 (1221)
T 1vt4_I 346 NWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDVM 405 (1221)
T ss_dssp HHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHHH
T ss_pred HHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHHH
Confidence 88753 24679999999999999999 99999999999999999999999999887 24588
Q ss_pred HHHHhhhhccceEEeccccCCceeeeeecHHHHHHH
Q 003086 459 DCFSGLTNRCLVEVVDKAYNKMISTCKIHDMVRDLV 494 (849)
Q Consensus 459 ~~~~~L~~~~ll~~~~~~~~~~~~~~~~Hdlv~~~~ 494 (849)
.++++|+++||++.. +....|+|||++++++
T Consensus 406 ~~L~eLvdRSLLq~d-----~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 406 VVVNKLHKYSLVEKQ-----PKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHTSSSSSBC-----SSSSEEBCCCHHHHHH
T ss_pred HHHHHHHhhCCEEEe-----CCCCEEEehHHHHHHh
Confidence 999999999999873 2235799999999965
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.5e-38 Score=405.47 Aligned_cols=312 Identities=19% Similarity=0.308 Sum_probs=254.7
Q ss_pred CCCCccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhh-hccc-CceEEEEeCCccC--HHHHHH
Q 003086 158 YDHTLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREI-ENWF-ERRMWVSVSQTFT--EEQIMR 233 (849)
Q Consensus 158 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~s~~~~--~~~~~~ 233 (849)
..+..||||++++++|.++|...+++.++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ ....+.
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 200 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQ 200 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHH
Confidence 34567999999999999999876667899999999999999999999997544 4445 5677999998543 445577
Q ss_pred HHHHHhcCCCC-----CCCHHHHHHHHHHHhcCc--cEEEEEcCCCccCHHHHHHHHhcCCCCCCceEEEEecchhhhhh
Q 003086 234 SMLRNLGDASA-----GDDRGELLRKINQYLLGK--RYLIVMDDVWGEDLAWWRRIYEGLPKGKGSSIIITTRNGKVSQK 306 (849)
Q Consensus 234 ~i~~~l~~~~~-----~~~~~~~~~~l~~~l~~~--~~LlVlDdv~~~~~~~~~~l~~~l~~~~~s~ilvTtr~~~v~~~ 306 (849)
.++..+..... ..+.+.+.+.++..+.++ |+||||||||+ ...|+.+ ++|++||||||+..++..
T Consensus 201 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~--~~~~~~~------~~~~~ilvTtR~~~~~~~ 272 (1249)
T 3sfz_A 201 NLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWD--PWVLKAF------DNQCQILLTTRDKSVTDS 272 (1249)
T ss_dssp HHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCC--HHHHTTT------CSSCEEEEEESSTTTTTT
T ss_pred HHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCC--HHHHHhh------cCCCEEEEEcCCHHHHHh
Confidence 78887766432 457888899999999877 99999999998 5554432 559999999999999865
Q ss_pred ccccccccccCCC-CChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHhhhhhcCCCChHHHHHHH
Q 003086 307 MGVKKARMHFPKF-LSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVGGMMLYKPPTYNEWRRTA 385 (849)
Q Consensus 307 ~~~~~~~~~~l~~-L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l~~~~~~~~~w~~~~ 385 (849)
+.... ..+++.+ |+.+|+++||...++. ..+...+++++|+++|+|+||||+++|++|+.+.. .|...+
T Consensus 273 ~~~~~-~~~~~~~~l~~~~a~~l~~~~~~~------~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~---~~~~~l 342 (1249)
T 3sfz_A 273 VMGPK-HVVPVESGLGREKGLEILSLFVNM------KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPN---RWAYYL 342 (1249)
T ss_dssp CCSCB-CCEECCSSCCHHHHHHHHHHHHTS------CSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSS---CHHHHH
T ss_pred hcCCc-eEEEecCCCCHHHHHHHHHHhhCC------ChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChh---HHHHHH
Confidence 43322 5788886 9999999999998842 23445678999999999999999999999998764 577777
Q ss_pred Hhhhhhhcc--------CCchHHHHHHHhhhCCChhhHHHHHHhccCCCCccccHHHHHHHhHhcCCCcCCCCCCHHHHH
Q 003086 386 DNFRDELAE--------NDDSVMASLQLSYDELPPYLKSCFLSFSVYPEDCVIRKEQLVYWWIGEGFVPQRNGRSSIEAG 457 (849)
Q Consensus 386 ~~~~~~~~~--------~~~~~~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~wia~g~i~~~~~~~~e~~~ 457 (849)
+.+...... ....+..++.+||+.||+++|.||+|||+||+++.|+++.++.+|.++ ++.+
T Consensus 343 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~ 411 (1249)
T 3sfz_A 343 RQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEV 411 (1249)
T ss_dssp HHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHH
T ss_pred HHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHHH
Confidence 766543211 135699999999999999999999999999999999999999999664 5778
Q ss_pred HHHHHhhhhccceEEeccccCCceeeeeecHHHHHHHHHHhhcc
Q 003086 458 EDCFSGLTNRCLVEVVDKAYNKMISTCKIHDMVRDLVIRVAEED 501 (849)
Q Consensus 458 ~~~~~~L~~~~ll~~~~~~~~~~~~~~~~Hdlv~~~~~~~~~~e 501 (849)
++++++|+++||++... +++..+|+|||+||++++..+.++
T Consensus 412 ~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 412 EDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 99999999999999754 345567999999999999987765
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=2.2e-35 Score=344.49 Aligned_cols=308 Identities=19% Similarity=0.315 Sum_probs=242.0
Q ss_pred CCCccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhh-hccc-CceEEEEeCCccCHHHHHHHH-
Q 003086 159 DHTLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREI-ENWF-ERRMWVSVSQTFTEEQIMRSM- 235 (849)
Q Consensus 159 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~s~~~~~~~~~~~i- 235 (849)
.+..||||+.++++|.++|....++.++|+|+||||+||||||++++++.++ ..+| +.++|++++.. +...++..+
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHH
Confidence 3457999999999999999865556899999999999999999999998666 7889 47999999875 344444443
Q ss_pred --HHHhcCC-----CCCCCHHHHHHHHHHHhcC--ccEEEEEcCCCccCHHHHHHHHhcCCCCCCceEEEEecchhhhhh
Q 003086 236 --LRNLGDA-----SAGDDRGELLRKINQYLLG--KRYLIVMDDVWGEDLAWWRRIYEGLPKGKGSSIIITTRNGKVSQK 306 (849)
Q Consensus 236 --~~~l~~~-----~~~~~~~~~~~~l~~~l~~--~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~s~ilvTtr~~~v~~~ 306 (849)
+..++.. ....+.+.+...++..+.+ +++||||||+|+ ...++ .+ +.+++||||||+..++..
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~--~~~l~----~l--~~~~~ilvTsR~~~~~~~ 272 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWD--SWVLK----AF--DSQCQILLTTRDKSVTDS 272 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECC--HHHHH----TT--CSSCEEEEEESCGGGGTT
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCC--HHHHH----Hh--cCCCeEEEECCCcHHHHh
Confidence 4455421 1245677888888888866 789999999998 44333 23 458999999999988776
Q ss_pred ccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHhhhhhcCCCChHHHHHHHH
Q 003086 307 MGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVGGMMLYKPPTYNEWRRTAD 386 (849)
Q Consensus 307 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l~~~~~~~~~w~~~~~ 386 (849)
+.........+++|+.+|+++||...++.. .....+.+.+|+++|+|+||||..+|+.++.+.. .|...++
T Consensus 273 ~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~------~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~---~w~~~l~ 343 (591)
T 1z6t_A 273 VMGPKYVVPVESSLGKEKGLEILSLFVNMK------KADLPEQAHSIIKECKGSPLVVSLIGALLRDFPN---RWEYYLK 343 (591)
T ss_dssp CCSCEEEEECCSSCCHHHHHHHHHHHHTSC------GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTT---CHHHHHH
T ss_pred cCCCceEeecCCCCCHHHHHHHHHHHhCCC------cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCch---hHHHHHH
Confidence 543221223346999999999999998532 1233567899999999999999999999987643 6888777
Q ss_pred hhhhhhcc--------CCchHHHHHHHhhhCCChhhHHHHHHhccCCCCccccHHHHHHHhHhcCCCcCCCCCCHHHHHH
Q 003086 387 NFRDELAE--------NDDSVMASLQLSYDELPPYLKSCFLSFSVYPEDCVIRKEQLVYWWIGEGFVPQRNGRSSIEAGE 458 (849)
Q Consensus 387 ~~~~~~~~--------~~~~~~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~wia~g~i~~~~~~~~e~~~~ 458 (849)
.+...... ....+..++..||+.||++.|.||++||+||+++.|+.+.++.+|.++ .+.+.
T Consensus 344 ~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~~ 412 (591)
T 1z6t_A 344 QLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TEEVE 412 (591)
T ss_dssp HHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHHH
T ss_pred HHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-----------HHHHH
Confidence 76543211 245899999999999999999999999999999999999999999653 34578
Q ss_pred HHHHhhhhccceEEeccccCCceeeeeecHHHHHHHHHHh
Q 003086 459 DCFSGLTNRCLVEVVDKAYNKMISTCKIHDMVRDLVIRVA 498 (849)
Q Consensus 459 ~~~~~L~~~~ll~~~~~~~~~~~~~~~~Hdlv~~~~~~~~ 498 (849)
.++++|+++||++... ++....|+||+++|++++...
T Consensus 413 ~~l~~L~~~~Ll~~~~---~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 413 DILQEFVNKSLLFCDR---NGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHTTSSEEEE---ETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHhCcCeEEec---CCCccEEEEcHHHHHHHHhhh
Confidence 8999999999998653 234467999999999999874
No 5
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=8.7e-22 Score=223.53 Aligned_cols=288 Identities=19% Similarity=0.170 Sum_probs=203.4
Q ss_pred cCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCcc-ccC
Q 003086 529 LKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPS-LKK 607 (849)
Q Consensus 529 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~-i~~ 607 (849)
.+++.|.+.+. .+....+..|.++++|++|+|++|.+.. ..|..|+++++|++|+|++| .+..+|.. +.+
T Consensus 32 ~~l~~L~L~~n-----~l~~~~~~~~~~l~~L~~L~L~~n~i~~---~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~ 102 (477)
T 2id5_A 32 TETRLLDLGKN-----RIKTLNQDEFASFPHLEELELNENIVSA---VEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTG 102 (477)
T ss_dssp TTCSEEECCSS-----CCCEECTTTTTTCTTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTT
T ss_pred CCCcEEECCCC-----ccceECHhHccCCCCCCEEECCCCccCE---eChhhhhCCccCCEEECCCC-cCCccCcccccC
Confidence 45666655443 3344556788999999999999998872 45788999999999999999 77777764 688
Q ss_pred CCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccc
Q 003086 608 LKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRL 687 (849)
Q Consensus 608 L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L 687 (849)
+++|++|+|++|......|..+.++++|++|++++|.+....|..++.+++|+.|++..+. ........+.++++|
T Consensus 103 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~~~l~~l~~L 178 (477)
T 2id5_A 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN----LTSIPTEALSHLHGL 178 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC----CSSCCHHHHTTCTTC
T ss_pred CCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc----CcccChhHhcccCCC
Confidence 9999999999888777778888999999999999998887777788999999999876653 234444568889999
Q ss_pred cceeeeeccCcccchHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCC-CcCCCCCCCCCce
Q 003086 688 RKLGLQLTCGDEIEEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSP-VWLNPASLPMLRY 766 (849)
Q Consensus 688 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~ 766 (849)
+.|++.+|.+....+..+..+++|+.|++++|...... ........+|+.|+++++.....| ..+ ..+++|+.
T Consensus 179 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~ 252 (477)
T 2id5_A 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM----TPNCLYGLNLTSLSITHCNLTAVPYLAV--RHLVYLRF 252 (477)
T ss_dssp CEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEE----CTTTTTTCCCSEEEEESSCCCSCCHHHH--TTCTTCCE
T ss_pred cEEeCCCCcCcEeChhhcccCcccceeeCCCCcccccc----CcccccCccccEEECcCCcccccCHHHh--cCccccCe
Confidence 99999999887777777888899999999877543321 111223347778888776544434 233 56777888
Q ss_pred EEEeeCCccccccccccCcccccccceeecccccccccccccccccccccceeeecc-------------cccCcccCcC
Q 003086 767 LSVCSGNLSKMHDSFWGENNTVWKIEALLFESLSDLGIEWTRLQGVMPSLHIVNASW-------------CPELDSFPIE 833 (849)
Q Consensus 767 L~L~~n~l~~~~~~~~~~~~fp~~L~~L~l~~l~~L~l~~~~~~~~~p~L~~L~i~~-------------c~~L~~l~l~ 833 (849)
|+|++|.+..++...+. .++ +|+.|.+.+..--. .....-..+++|+.|++++ |++|+.|.++
T Consensus 253 L~Ls~n~l~~~~~~~~~--~l~-~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 253 LNLSYNPISTIEGSMLH--ELL-RLQEIQLVGGQLAV-VEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328 (477)
T ss_dssp EECCSSCCCEECTTSCT--TCT-TCCEEECCSSCCSE-ECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred eECCCCcCCccChhhcc--ccc-cCCEEECCCCccce-ECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence 88887777766554443 245 67777666543111 0011122456666665543 4567777777
Q ss_pred Cccccc
Q 003086 834 DVGFRG 839 (849)
Q Consensus 834 ~n~l~~ 839 (849)
+|.++.
T Consensus 329 ~N~l~c 334 (477)
T 2id5_A 329 SNPLAC 334 (477)
T ss_dssp SSCEEC
T ss_pred CCCccC
Confidence 777764
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=1.2e-20 Score=204.77 Aligned_cols=290 Identities=20% Similarity=0.174 Sum_probs=205.6
Q ss_pred CcceeEeeccCcc--hHhhhhccCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccccCCCCc
Q 003086 509 LNCRHLGVTSDVE--SKQLISNLKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQH 586 (849)
Q Consensus 509 ~~~r~lsi~~~~~--~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~ 586 (849)
.+.+++.+..... ......++++++|.+.+... . .++. |.++++|++|++++|.+. .+ +.+..+++
T Consensus 44 ~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i-----~-~~~~-~~~l~~L~~L~L~~n~i~----~~-~~~~~l~~ 111 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQI-----T-DISP-LSNLVKLTNLYIGTNKIT----DI-SALQNLTN 111 (347)
T ss_dssp TTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCC-----C-CCGG-GTTCTTCCEEECCSSCCC----CC-GGGTTCTT
T ss_pred ccccEEEEeCCccccchhhhhcCCccEEEccCCcc-----c-cchh-hhcCCcCCEEEccCCccc----Cc-hHHcCCCc
Confidence 3566676664332 33355678888887766432 2 2333 888999999999999886 33 46889999
Q ss_pred cceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCccccccccccccCccc
Q 003086 587 LSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFR 666 (849)
Q Consensus 587 Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~ 666 (849)
|++|+|++| .+..+|. +..+++|++|++++|.....++. +..+++|++|++++|.+.. .+. ++.+++|+.|++..
T Consensus 112 L~~L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 112 LRELYLNED-NISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKD-VTP-IANLTDLYSLSLNY 186 (347)
T ss_dssp CSEEECTTS-CCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSEEECTT
T ss_pred CCEEECcCC-cccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCC-chh-hccCCCCCEEEccC
Confidence 999999998 7777776 88899999999998876665554 8889999999999988763 333 78888999998766
Q ss_pred ccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEec
Q 003086 667 PARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNF 746 (849)
Q Consensus 667 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~ 746 (849)
+.. . ....+..+++|+.|++++|.+....+ +..+++|+.|++++|.++... .+..+++|+.|++++
T Consensus 187 n~l----~--~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~l~~ 252 (347)
T 4fmz_A 187 NQI----E--DISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS------PLANLSQLTWLEIGT 252 (347)
T ss_dssp SCC----C--CCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG------GGTTCTTCCEEECCS
T ss_pred Ccc----c--ccccccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc------chhcCCCCCEEECCC
Confidence 532 1 12337788899999998887666544 778889999999888765431 256788899999988
Q ss_pred cCCCCCCCcCCCCCCCCCceEEEeeCCccccccccccCcccccccceeecccccccccccccccccccccceeeeccc--
Q 003086 747 YPGKTSPVWLNPASLPMLRYLSVCSGNLSKMHDSFWGENNTVWKIEALLFESLSDLGIEWTRLQGVMPSLHIVNASWC-- 824 (849)
Q Consensus 747 ~~~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~fp~~L~~L~l~~l~~L~l~~~~~~~~~p~L~~L~i~~c-- 824 (849)
+.....+ .+ ..+++|++|++++|.+..++. + ..++ +|+.|.+.++.--. .....-+.+|+|+.|++++|
T Consensus 253 n~l~~~~-~~--~~l~~L~~L~l~~n~l~~~~~--~--~~l~-~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 253 NQISDIN-AV--KDLTKLKMLNVGSNQISDISV--L--NNLS-QLNSLFLNNNQLGN-EDMEVIGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp SCCCCCG-GG--TTCTTCCEEECCSSCCCCCGG--G--GGCT-TCSEEECCSSCCCG-GGHHHHHTCTTCSEEECCSSSC
T ss_pred CccCCCh-hH--hcCCCcCEEEccCCccCCChh--h--cCCC-CCCEEECcCCcCCC-cChhHhhccccCCEEEccCCcc
Confidence 7555433 33 778899999999988887632 1 2456 88888888765322 11222245777888877654
Q ss_pred ---------ccCcccCcCCcccc
Q 003086 825 ---------PELDSFPIEDVGFR 838 (849)
Q Consensus 825 ---------~~L~~l~l~~n~l~ 838 (849)
++|+.|.+++|.|+
T Consensus 324 ~~~~~~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 324 TDIRPLASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCCGGGGGCTTCSEESSSCC---
T ss_pred ccccChhhhhccceeehhhhccc
Confidence 46777778888765
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=8.2e-22 Score=209.98 Aligned_cols=211 Identities=20% Similarity=0.189 Sum_probs=113.9
Q ss_pred hhhhhhcCCCcceEEecCC-ccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCCh
Q 003086 549 NLATKFSECRYLRVLDISR-SIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPS 627 (849)
Q Consensus 549 ~~~~~~~~l~~Lr~L~L~~-~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~ 627 (849)
.+|..|.++++|++|+|++ |.+.+ .+|..|+.+++|++|+|++|.....+|..+..+++|++|++++|.....+|.
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~---~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 143 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVG---PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP 143 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEES---CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG
T ss_pred ccChhHhCCCCCCeeeCCCCCcccc---cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCCh
Confidence 3455666666666666663 55542 4556666666666666666622235666666666666666666555556666
Q ss_pred hhhcccCCcEeeccCCCCccccCccccccc-cccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhc
Q 003086 628 YVQSFIQLRALDVTHCGSLQYLPKGFGKLL-NLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALV 706 (849)
Q Consensus 628 ~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~-~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~ 706 (849)
.+.++++|++|++++|.+.+..|..++.++ +|+.|++..+.. .+..+..+..++ |+.|++++|.+....+..+.
T Consensus 144 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l----~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~ 218 (313)
T 1ogq_A 144 SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL----TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFG 218 (313)
T ss_dssp GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE----EEECCGGGGGCC-CSEEECCSSEEEECCGGGCC
T ss_pred HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee----eccCChHHhCCc-ccEEECcCCcccCcCCHHHh
Confidence 666666666666666666555666666665 666665444321 222334455554 66666666655544455555
Q ss_pred CCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCC-CCCCcCCCCCCCCCceEEEeeCCc
Q 003086 707 NLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGK-TSPVWLNPASLPMLRYLSVCSGNL 774 (849)
Q Consensus 707 ~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~n~l 774 (849)
.+++|+.|+|++|.+... +..+..+++|++|+++++... ..|.++ ..+++|++|+|++|.+
T Consensus 219 ~l~~L~~L~L~~N~l~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 219 SDKNTQKIHLAKNSLAFD-----LGKVGLSKNLNGLDLRNNRIYGTLPQGL--TQLKFLHSLNVSFNNL 280 (313)
T ss_dssp TTSCCSEEECCSSEECCB-----GGGCCCCTTCCEEECCSSCCEECCCGGG--GGCTTCCEEECCSSEE
T ss_pred cCCCCCEEECCCCceeee-----cCcccccCCCCEEECcCCcccCcCChHH--hcCcCCCEEECcCCcc
Confidence 666666666665544321 111233444555554443322 224333 4444444444444443
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=2.3e-21 Score=232.68 Aligned_cols=142 Identities=23% Similarity=0.206 Sum_probs=77.0
Q ss_pred hhhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChh
Q 003086 549 NLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSY 628 (849)
Q Consensus 549 ~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~ 628 (849)
.+|..|.++++|++|+|++|.+.+ ..|..++.+++|++|+|++|.....+|..++.+++|++|++++|.....+|..
T Consensus 409 ~~p~~l~~l~~L~~L~Ls~N~l~~---~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 485 (768)
T 3rgz_A 409 KIPPTLSNCSELVSLHLSFNYLSG---TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEES---CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred ccCHHHhcCCCCCEEECcCCcccC---cccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH
Confidence 344555555555555555555542 44555555555555555555333355555555555555555555555555555
Q ss_pred hhcccCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccC
Q 003086 629 VQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCG 697 (849)
Q Consensus 629 i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 697 (849)
+.++++|++|++++|.+.+..|..++.+++|+.|++..+ ...+..+..++.+++|+.|++++|.+
T Consensus 486 l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N----~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN----SFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS----CCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCC----cccCcCCHHHcCCCCCCEEECCCCcc
Confidence 555555555555555555555555555555555554433 22233444555555555555555543
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=2.9e-21 Score=231.75 Aligned_cols=158 Identities=18% Similarity=0.071 Sum_probs=90.2
Q ss_pred CCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcccCCc
Q 003086 557 CRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLR 636 (849)
Q Consensus 557 l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 636 (849)
++.|++|++++|.+.+ .+|..++.+++|++|+|++|.....+|..++.+++|++|++++|.....+|..+..+++|+
T Consensus 393 ~~~L~~L~L~~n~l~~---~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 469 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTG---KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469 (768)
T ss_dssp TCCCCEEECCSSEEEE---ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred cCCccEEECCCCcccc---ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCce
Confidence 5556666666666542 4555566666666666666633335555566666666666665555555666666666666
Q ss_pred EeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCeEEE
Q 003086 637 ALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSI 716 (849)
Q Consensus 637 ~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L 716 (849)
.|++++|.+.+..|..++.+++|+.|++..+. ..+..+..++.+++|+.|++++|.+.+..+..+..+++|+.|++
T Consensus 470 ~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~----l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 545 (768)
T 3rgz_A 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNR----LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSC----CCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEEC
T ss_pred EEEecCCcccCcCCHHHhcCCCCCEEEccCCc----cCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEEC
Confidence 66666666555555556666666666544432 23334445556666666666666555444555555666666666
Q ss_pred EeecC
Q 003086 717 SCFDS 721 (849)
Q Consensus 717 ~~~~~ 721 (849)
++|.+
T Consensus 546 s~N~l 550 (768)
T 3rgz_A 546 NTNLF 550 (768)
T ss_dssp CSSEE
T ss_pred CCCcc
Confidence 55543
No 10
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=1.8e-21 Score=219.69 Aligned_cols=312 Identities=13% Similarity=0.052 Sum_probs=165.8
Q ss_pred CcceeEeeccCcc----hHhhhhccCccchhcccccccccchh-hhhhhhhcCCCcceEEecCCccccccccccccccCC
Q 003086 509 LNCRHLGVTSDVE----SKQLISNLKLRALMSTTKTAEVNNIA-SNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGS 583 (849)
Q Consensus 509 ~~~r~lsi~~~~~----~~~~~~~~~lrsl~~~~~~~~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~ 583 (849)
.+.+++.+..+.- ......+++|++|.+.+.. +. ...+..|.++++|++|+|++|.+.. ..|..|++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-----~~~~i~~~~~~~l~~L~~L~Ls~n~l~~---~~~~~~~~ 101 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQT-----PGLVIRNNTFRGLSSLIILKLDYNQFLQ---LETGAFNG 101 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCS-----TTCEECTTTTTTCTTCCEEECTTCTTCE---ECTTTTTT
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCc-----ccceECcccccccccCCEEeCCCCccCc---cChhhccC
Confidence 4556666554321 2223455666666554432 11 1224456677777777777776652 34566677
Q ss_pred CCccceEeccCCCCCc-ccCcc--ccCCCCCcEEeeccccCCccCChh-hhcccCCcEeeccCCCCccccCcccccc--c
Q 003086 584 LQHLSYLCLSNTHPLI-HLPPS--LKKLKNLQILDVSYCQNLKMLPSY-VQSFIQLRALDVTHCGSLQYLPKGFGKL--L 657 (849)
Q Consensus 584 l~~Lr~L~L~~~~~~~-~lp~~--i~~L~~L~~L~L~~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~i~~l--~ 657 (849)
+++|++|+|++| .+. ..|.. ++.+++|++|++++|......|.. +.++++|++|++++|.+.+..|..++.+ .
T Consensus 102 l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~ 180 (455)
T 3v47_A 102 LANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK 180 (455)
T ss_dssp CTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTC
T ss_pred cccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccc
Confidence 777777777777 343 23333 666777777777766655554554 5667777777777776665555555544 3
Q ss_pred cccccCcccccCCCCCCCCCc----hhhhccccccceeeeeccCcccchHhhcC--------------------------
Q 003086 658 NLEVLLGFRPARSSQPEGCRI----SELKNLTRLRKLGLQLTCGDEIEEDALVN-------------------------- 707 (849)
Q Consensus 658 ~L~~L~~~~~~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~l~~-------------------------- 707 (849)
+|+.|++..+........... ..+..+++|+.|++++|.+....+..+..
T Consensus 181 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 260 (455)
T 3v47_A 181 HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260 (455)
T ss_dssp EEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCS
T ss_pred cccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhh
Confidence 444444333321110000000 01223456666666666554333222211
Q ss_pred -------------CCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCC-CCCCcCCCCCCCCCceEEEeeCC
Q 003086 708 -------------LRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGK-TSPVWLNPASLPMLRYLSVCSGN 773 (849)
Q Consensus 708 -------------~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~n~ 773 (849)
.++|+.|++++|.+.+. ....+..+++|+.|+++++... ..|.++ ..+++|++|+|++|.
T Consensus 261 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~ 334 (455)
T 3v47_A 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFAL----LKSVFSHFTDLEQLTLAQNEINKIDDNAF--WGLTHLLKLNLSQNF 334 (455)
T ss_dssp SCCCCTTTTGGGTTSCCCEEECCSSCCCEE----CTTTTTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSSC
T ss_pred hccCcccccccccccCceEEEecCcccccc----chhhcccCCCCCEEECCCCcccccChhHh--cCcccCCEEECCCCc
Confidence 13555666655544321 1122445666777777654332 223344 566777777777776
Q ss_pred ccccccccccCcccccccceeeccccccccccc-ccccccccccceeeecc-------------cccCcccCcCCccccc
Q 003086 774 LSKMHDSFWGENNTVWKIEALLFESLSDLGIEW-TRLQGVMPSLHIVNASW-------------CPELDSFPIEDVGFRG 839 (849)
Q Consensus 774 l~~~~~~~~~~~~fp~~L~~L~l~~l~~L~l~~-~~~~~~~p~L~~L~i~~-------------c~~L~~l~l~~n~l~~ 839 (849)
+..+....++ .++ +|+.|++.++. +. .. ...-..+|+|+.|++++ +++|+.|.+++|.+++
T Consensus 335 l~~~~~~~~~--~l~-~L~~L~Ls~N~-l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 335 LGSIDSRMFE--NLD-KLEVLDLSYNH-IR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CCEECGGGGT--TCT-TCCEEECCSSC-CC-EECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCcChhHhc--Ccc-cCCEEECCCCc-cc-ccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 6655444333 244 66666666543 22 11 11223466666666653 4577778888888887
Q ss_pred c
Q 003086 840 G 840 (849)
Q Consensus 840 ~ 840 (849)
.
T Consensus 410 ~ 410 (455)
T 3v47_A 410 S 410 (455)
T ss_dssp C
T ss_pred C
Confidence 4
No 11
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=1.3e-21 Score=208.57 Aligned_cols=258 Identities=15% Similarity=0.101 Sum_probs=196.0
Q ss_pred CcceEEecCCccccccccccccccCCCCccceEeccC-CCCCcccCccccCCCCCcEEeeccccCCccCChhhhcccCCc
Q 003086 558 RYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSN-THPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLR 636 (849)
Q Consensus 558 ~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~-~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 636 (849)
..++.|+|++|.+.+. ..+|..++++++|++|+|++ |.....+|..++++++|++|++++|.....+|..+.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~-~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKP-YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSC-EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCC-cccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 5799999999998721 05788999999999999994 645568999999999999999998887779999999999999
Q ss_pred EeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccc-cccceeeeeccCcccchHhhcCCCCCCeEE
Q 003086 637 ALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLT-RLRKLGLQLTCGDEIEEDALVNLRELQFLS 715 (849)
Q Consensus 637 ~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 715 (849)
+|++++|.+.+..|..++.+++|++|++..+. ..+..+..+..++ +|+.|++++|.+....+..+..++ |+.|+
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~----l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~ 203 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNR----ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVD 203 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSC----CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEE
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCc----ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEE
Confidence 99999999988899999999999999976653 3345667888898 999999999988766677788887 99999
Q ss_pred EEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCCCcCCCCCCCCCceEEEeeCCccccccccccCcccccccceee
Q 003086 716 ISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSPVWLNPASLPMLRYLSVCSGNLSKMHDSFWGENNTVWKIEALL 795 (849)
Q Consensus 716 L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~fp~~L~~L~ 795 (849)
+++|.+.+. ....+..+++|+.|+++++.....+..+ ..+++|++|+|++|.+....+..+. .++ +|+.|+
T Consensus 204 Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~-~L~~L~ 274 (313)
T 1ogq_A 204 LSRNMLEGD----ASVLFGSDKNTQKIHLAKNSLAFDLGKV--GLSKNLNGLDLRNNRIYGTLPQGLT--QLK-FLHSLN 274 (313)
T ss_dssp CCSSEEEEC----CGGGCCTTSCCSEEECCSSEECCBGGGC--CCCTTCCEEECCSSCCEECCCGGGG--GCT-TCCEEE
T ss_pred CcCCcccCc----CCHHHhcCCCCCEEECCCCceeeecCcc--cccCCCCEEECcCCcccCcCChHHh--cCc-CCCEEE
Confidence 999876543 2345667899999999886543223234 7789999999999999854443333 255 777777
Q ss_pred cccccccccccccccccccccceeeecccccCcccCc
Q 003086 796 FESLSDLGIEWTRLQGVMPSLHIVNASWCPELDSFPI 832 (849)
Q Consensus 796 l~~l~~L~l~~~~~~~~~p~L~~L~i~~c~~L~~l~l 832 (849)
+.+..--. ..+.. +.+++|+.|++.++|.|...|+
T Consensus 275 Ls~N~l~~-~ip~~-~~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 275 VSFNNLCG-EIPQG-GNLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp CCSSEEEE-ECCCS-TTGGGSCGGGTCSSSEEESTTS
T ss_pred CcCCcccc-cCCCC-ccccccChHHhcCCCCccCCCC
Confidence 77643221 11111 3455555555555554444443
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.85 E-value=2e-21 Score=227.75 Aligned_cols=221 Identities=16% Similarity=0.153 Sum_probs=161.6
Q ss_pred chhhhhhhhhcCCCcceEEecCCccccccccc-----------------cccccC--CCCccceEeccCCCCCcccCccc
Q 003086 545 NIASNLATKFSECRYLRVLDISRSIFELPLKG-----------------LLSQTG--SLQHLSYLCLSNTHPLIHLPPSL 605 (849)
Q Consensus 545 ~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~-----------------~p~~~~--~l~~Lr~L~L~~~~~~~~lp~~i 605 (849)
.+.+ +|..|.++++|++|+|++|.+.+ . +|..++ ++++|++|+|++|...+.+|..+
T Consensus 194 ~l~~-ip~~l~~l~~L~~L~Ls~n~l~~---~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l 269 (636)
T 4eco_A 194 NITF-VSKAVMRLTKLRQFYMGNSPFVA---ENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL 269 (636)
T ss_dssp EEEE-ECGGGGGCTTCCEEEEESCCCCG---GGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT
T ss_pred CCcc-CCHHHhcccCCCEEECcCCcccc---ccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH
Confidence 4445 78889999999999999999873 2 899999 99999999999997788999999
Q ss_pred cCCCCCcEEeecccc-CCc-cCChhhhcc------cCCcEeeccCCCCccccCc--cccccccccccCcccccCCCCCCC
Q 003086 606 KKLKNLQILDVSYCQ-NLK-MLPSYVQSF------IQLRALDVTHCGSLQYLPK--GFGKLLNLEVLLGFRPARSSQPEG 675 (849)
Q Consensus 606 ~~L~~L~~L~L~~~~-~~~-~lp~~i~~l------~~L~~L~l~~~~~~~~~p~--~i~~l~~L~~L~~~~~~~~~~~~~ 675 (849)
+++++|++|++++|. ... .+|..++++ ++|++|++++|.+. .+|. .++.+++|+.|++..+. ..+
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~----l~g 344 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQ----LEG 344 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCC----CEE
T ss_pred hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCc----Ccc
Confidence 999999999999887 555 799988887 99999999999988 8888 89999999999876653 232
Q ss_pred CCchhhhccccccceeeeeccCcccchHhhcCCCC-CCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCC-CCC
Q 003086 676 CRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRE-LQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGK-TSP 753 (849)
Q Consensus 676 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~p 753 (849)
..+ .++.+++|+.|++++|.+..+ +..+..+++ |+.|++++|.++.. +..+ ...++++|+.|+++++... ..|
T Consensus 345 ~ip-~~~~l~~L~~L~L~~N~l~~l-p~~l~~l~~~L~~L~Ls~N~l~~l--p~~~-~~~~l~~L~~L~Ls~N~l~~~~p 419 (636)
T 4eco_A 345 KLP-AFGSEIKLASLNLAYNQITEI-PANFCGFTEQVENLSFAHNKLKYI--PNIF-DAKSVSVMSAIDFSYNEIGSVDG 419 (636)
T ss_dssp ECC-CCEEEEEESEEECCSSEEEEC-CTTSEEECTTCCEEECCSSCCSSC--CSCC-CTTCSSCEEEEECCSSCTTTTTT
T ss_pred chh-hhCCCCCCCEEECCCCccccc-cHhhhhhcccCcEEEccCCcCccc--chhh-hhcccCccCEEECcCCcCCCcch
Confidence 344 778888999999988876633 345777888 88888888876521 1111 1112335666666654321 123
Q ss_pred CcCC-----CCCCCCCceEEEeeCCcccccc
Q 003086 754 VWLN-----PASLPMLRYLSVCSGNLSKMHD 779 (849)
Q Consensus 754 ~~~~-----~~~l~~L~~L~L~~n~l~~~~~ 779 (849)
.++. ...+++|++|+|++|.+..++.
T Consensus 420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~ 450 (636)
T 4eco_A 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPK 450 (636)
T ss_dssp CSSCTTCSSCCCCCCEEEEECCSSCCCSCCT
T ss_pred hhhcccccccccCCCCCEEECcCCccCcCCH
Confidence 3331 0144455555555555554443
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.84 E-value=1.5e-20 Score=223.92 Aligned_cols=313 Identities=13% Similarity=0.110 Sum_probs=220.0
Q ss_pred CcceeEeeccCcc----hHhhhhccCccchhcccccccccchhh-hhhhhhcC-------CCcceEEecCCccccccccc
Q 003086 509 LNCRHLGVTSDVE----SKQLISNLKLRALMSTTKTAEVNNIAS-NLATKFSE-------CRYLRVLDISRSIFELPLKG 576 (849)
Q Consensus 509 ~~~r~lsi~~~~~----~~~~~~~~~lrsl~~~~~~~~~~~~~~-~~~~~~~~-------l~~Lr~L~L~~~~~~~~~~~ 576 (849)
.+.+.+.+..+.. +.....+++|+.|.+.++. .+.+ .+|..|.+ +++|++|+|++|.+. .
T Consensus 491 ~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~----~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~----~ 562 (876)
T 4ecn_A 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR----GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE----E 562 (876)
T ss_dssp TTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT----TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC----B
T ss_pred CCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC----CcccccchHHHHhhhhcccccCCccEEEeeCCcCC----c
Confidence 4567777764421 3345567788888766542 0333 45554444 459999999999886 6
Q ss_pred ccc--ccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcccC-CcEeeccCCCCccccCccc
Q 003086 577 LLS--QTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQ-LRALDVTHCGSLQYLPKGF 653 (849)
Q Consensus 577 ~p~--~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~-L~~L~l~~~~~~~~~p~~i 653 (849)
+|. .++++++|++|+|++| .+..+| .++.+++|+.|+|++|... .+|..+.++++ |++|++++|.+. .+|..+
T Consensus 563 ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~ 638 (876)
T 4ecn_A 563 FPASASLQKMVKLGLLDCVHN-KVRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIF 638 (876)
T ss_dssp CCCHHHHTTCTTCCEEECTTS-CCCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCC
T ss_pred cCChhhhhcCCCCCEEECCCC-Ccccch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhh
Confidence 788 8899999999999999 677888 7899999999999977755 88888999998 999999999887 788777
Q ss_pred ccccc--ccccCcccccCCCCCCCCCchhhh--ccccccceeeeeccCcccchHhhcCCCCCCeEEEEeecCCCCchhhh
Q 003086 654 GKLLN--LEVLLGFRPARSSQPEGCRISELK--NLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSISCFDSHGSDLVAK 729 (849)
Q Consensus 654 ~~l~~--L~~L~~~~~~~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~ 729 (849)
+.++. |+.|++..+........ .+..+. .+++|+.|++++|.+..++...+..+++|+.|+|++|.+..... ..
T Consensus 639 ~~~~~~~L~~L~Ls~N~l~g~ip~-l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~-~~ 716 (876)
T 4ecn_A 639 NAKSVYVMGSVDFSYNKIGSEGRN-ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE-NS 716 (876)
T ss_dssp CTTCSSCEEEEECCSSCTTTTSSS-CSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCT-TS
T ss_pred hccccCCCCEEECcCCcCCCcccc-chhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccCh-HH
Confidence 77654 88888766643221111 112222 44589999999999887776767789999999999997763211 11
Q ss_pred ccc----cCCCCCCCeEEEeccCCCCCCCcCCCCCCCCCceEEEeeCCccccccccccCcccccccceeecccccccc--
Q 003086 730 IDE----LYPPEQLDELSLNFYPGKTSPVWLNPASLPMLRYLSVCSGNLSKMHDSFWGENNTVWKIEALLFESLSDLG-- 803 (849)
Q Consensus 730 l~~----l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~fp~~L~~L~l~~l~~L~-- 803 (849)
+.. +.++++|+.|+++++....+|..+....+++|+.|+|++|.+..++..+. .++ +|+.|.+.+++.+.
T Consensus 717 ~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~---~L~-~L~~L~Ls~N~~ls~N 792 (876)
T 4ecn_A 717 LKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL---NSS-QLKAFGIRHQRDAEGN 792 (876)
T ss_dssp SSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGG---GCT-TCCEEECCCCBCTTCC
T ss_pred hccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhh---cCC-CCCEEECCCCCCcccc
Confidence 111 22345899999998766666776622389999999999999998755443 356 99999987644221
Q ss_pred ---cccccccccccccceeeecccc----------cCcccCcCCccccc
Q 003086 804 ---IEWTRLQGVMPSLHIVNASWCP----------ELDSFPIEDVGFRG 839 (849)
Q Consensus 804 ---l~~~~~~~~~p~L~~L~i~~c~----------~L~~l~l~~n~l~~ 839 (849)
-.++..-..+|+|+.|++++|. +|+.|.|++|.+..
T Consensus 793 ~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 793 RILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADNPNIS 841 (876)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCCSSSCEEECCSCTTCE
T ss_pred cccccChHHHhcCCCCCEEECCCCCCCccCHhhcCCCCEEECCCCCCCc
Confidence 0222223457888888887653 56666677777654
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.84 E-value=3e-21 Score=230.05 Aligned_cols=275 Identities=11% Similarity=0.093 Sum_probs=202.0
Q ss_pred hhhhhcCCCcceEEecCCcccccc-c-----c--------ccccccC--CCCccceEeccCCCCCcccCccccCCCCCcE
Q 003086 550 LATKFSECRYLRVLDISRSIFELP-L-----K--------GLLSQTG--SLQHLSYLCLSNTHPLIHLPPSLKKLKNLQI 613 (849)
Q Consensus 550 ~~~~~~~l~~Lr~L~L~~~~~~~~-~-----~--------~~p~~~~--~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~ 613 (849)
+|..|.++++|++|+|++|.+.+. + . .+|..++ ++++|++|+|++|.....+|..++++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 778899999999999999998730 0 0 1888888 9999999999999778889999999999999
Q ss_pred Eeecccc-CCc-cCChhhhccc-------CCcEeeccCCCCccccCc--cccccccccccCcccccCCCCCCCCCchhhh
Q 003086 614 LDVSYCQ-NLK-MLPSYVQSFI-------QLRALDVTHCGSLQYLPK--GFGKLLNLEVLLGFRPARSSQPEGCRISELK 682 (849)
Q Consensus 614 L~L~~~~-~~~-~lp~~i~~l~-------~L~~L~l~~~~~~~~~p~--~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~ 682 (849)
|+|++|. ... .+|..+++++ +|++|++++|.+. .+|. .++.+++|+.|++..+.. . ..+ .++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l----~-~lp-~~~ 592 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKV----R-HLE-AFG 592 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCC----C-BCC-CCC
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCc----c-cch-hhc
Confidence 9999887 444 6888888777 9999999999988 8888 899999999999766632 2 333 788
Q ss_pred ccccccceeeeeccCcccchHhhcCCCC-CCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCC-CCC---cCC
Q 003086 683 NLTRLRKLGLQLTCGDEIEEDALVNLRE-LQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKT-SPV---WLN 757 (849)
Q Consensus 683 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-~p~---~~~ 757 (849)
++++|+.|++++|.+.. .+..+..+++ |+.|+|++|.+... +..+ ...+.++|+.|+++++.... +|. .+.
T Consensus 593 ~L~~L~~L~Ls~N~l~~-lp~~l~~l~~~L~~L~Ls~N~L~~l--p~~~-~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~ 668 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKYI--PNIF-NAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668 (876)
T ss_dssp TTSEESEEECCSSCCSC-CCTTSCEECTTCCEEECCSSCCCSC--CSCC-CTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred CCCcceEEECcCCcccc-chHHHhhccccCCEEECcCCCCCcC--chhh-hccccCCCCEEECcCCcCCCccccchhhhc
Confidence 89999999999998773 4456888888 99999999876632 1111 11223459999998764322 232 222
Q ss_pred CCCCCCCceEEEeeCCccccccccccCcccccccceeecccccccccccccc--c------ccccccceeeecccc----
Q 003086 758 PASLPMLRYLSVCSGNLSKMHDSFWGENNTVWKIEALLFESLSDLGIEWTRL--Q------GVMPSLHIVNASWCP---- 825 (849)
Q Consensus 758 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~fp~~L~~L~l~~l~~L~l~~~~~--~------~~~p~L~~L~i~~c~---- 825 (849)
...+++|+.|+|++|.+..++...+. .++ +|+.|.+.++. +. ..... . ..+|+|+.|++++|.
T Consensus 669 ~~~~~~L~~L~Ls~N~L~~lp~~~~~--~l~-~L~~L~Ls~N~-L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~l 743 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQKFPTELFA--TGS-PISTIILSNNL-MT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL 743 (876)
T ss_dssp TCCCCCEEEEECCSSCCCSCCHHHHH--TTC-CCSEEECCSCC-CS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCC
T ss_pred cccCCCcCEEEccCCcCCccCHHHHc--cCC-CCCEEECCCCc-CC-ccChHHhccccccccccCCccEEECCCCCCccc
Confidence 23556899999999999877665543 245 89999988653 33 22211 1 123488888888763
Q ss_pred ----------cCcccCcCCcccccc
Q 003086 826 ----------ELDSFPIEDVGFRGG 840 (849)
Q Consensus 826 ----------~L~~l~l~~n~l~~~ 840 (849)
+|+.|.|++|.+++-
T Consensus 744 p~~l~~~~l~~L~~L~Ls~N~L~~l 768 (876)
T 4ecn_A 744 SDDFRATTLPYLSNMDVSYNCFSSF 768 (876)
T ss_dssp CGGGSTTTCTTCCEEECCSSCCSSC
T ss_pred hHHhhhccCCCcCEEEeCCCCCCcc
Confidence 245555777877763
No 15
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=2.9e-20 Score=200.05 Aligned_cols=273 Identities=17% Similarity=0.103 Sum_probs=203.2
Q ss_pred cCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCC
Q 003086 529 LKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKL 608 (849)
Q Consensus 529 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L 608 (849)
+.++.|.+.+. .+....+..|.++++|++|+|++|.+.. ..|..|+.+++|++|+|++| .+..+|..+.
T Consensus 52 ~~l~~L~L~~n-----~i~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~-- 120 (330)
T 1xku_A 52 PDTALLDLQNN-----KITEIKDGDFKNLKNLHTLILINNKISK---ISPGAFAPLVKLERLYLSKN-QLKELPEKMP-- 120 (330)
T ss_dssp TTCCEEECCSS-----CCCCBCTTTTTTCTTCCEEECCSSCCCC---BCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--
T ss_pred CCCeEEECCCC-----cCCEeChhhhccCCCCCEEECCCCcCCe---eCHHHhcCCCCCCEEECCCC-cCCccChhhc--
Confidence 45666655443 3333455678999999999999999872 45888999999999999999 7888987665
Q ss_pred CCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCcc--ccCccccccccccccCcccccCCCCCCCCCchhhhcccc
Q 003086 609 KNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQ--YLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTR 686 (849)
Q Consensus 609 ~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~ 686 (849)
++|++|++++|......+..+.++++|++|++++|.+.. ..+..++.+++|+.|++..+.... .+..+ .++
T Consensus 121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-----l~~~~--~~~ 193 (330)
T 1xku_A 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-----IPQGL--PPS 193 (330)
T ss_dssp TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-----CCSSC--CTT
T ss_pred ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-----CCccc--ccc
Confidence 799999999887666666678999999999999998853 566778899999999877664322 12222 278
Q ss_pred ccceeeeeccCcccchHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCCCcCCCCCCCCCce
Q 003086 687 LRKLGLQLTCGDEIEEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSPVWLNPASLPMLRY 766 (849)
Q Consensus 687 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~ 766 (849)
|+.|++++|.+....+..+..+++|+.|++++|.+.... ...+..+++|+.|+++++.....|.++ ..+++|++
T Consensus 194 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~lp~~l--~~l~~L~~ 267 (330)
T 1xku_A 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD----NGSLANTPHLRELHLNNNKLVKVPGGL--ADHKYIQV 267 (330)
T ss_dssp CSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC----TTTGGGSTTCCEEECCSSCCSSCCTTT--TTCSSCCE
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC----hhhccCCCCCCEEECCCCcCccCChhh--ccCCCcCE
Confidence 999999999888887788999999999999999765431 123456789999999988766778777 88999999
Q ss_pred EEEeeCCccccccccccCc----ccccccceeecccccccccccccccccccccceeeecccccCcccCcCCcc
Q 003086 767 LSVCSGNLSKMHDSFWGEN----NTVWKIEALLFESLSDLGIEWTRLQGVMPSLHIVNASWCPELDSFPIEDVG 836 (849)
Q Consensus 767 L~L~~n~l~~~~~~~~~~~----~fp~~L~~L~l~~l~~L~l~~~~~~~~~p~L~~L~i~~c~~L~~l~l~~n~ 836 (849)
|++++|.++.++...+... .++ .|+.|.+.+.+ +. .|..... .+..|++|+.+.+++|+
T Consensus 268 L~l~~N~i~~~~~~~f~~~~~~~~~~-~l~~l~l~~N~-~~-~~~i~~~--------~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 268 VYLHNNNISAIGSNDFCPPGYNTKKA-SYSGVSLFSNP-VQ-YWEIQPS--------TFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp EECCSSCCCCCCTTSSSCSSCCTTSC-CCSEEECCSSS-SC-GGGSCGG--------GGTTCCCGGGEEC----
T ss_pred EECCCCcCCccChhhcCCcccccccc-cccceEeecCc-cc-ccccCcc--------ccccccceeEEEecccC
Confidence 9999999998887665432 245 67777776654 22 2222222 23446677777777663
No 16
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=3.2e-20 Score=210.66 Aligned_cols=265 Identities=17% Similarity=0.099 Sum_probs=206.9
Q ss_pred CcceEEecCCccccccccccccccCCCCccceEeccCCCCCccc-CccccCCCCCcEEeeccccCCccCChhhhcccCCc
Q 003086 558 RYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHL-PPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLR 636 (849)
Q Consensus 558 ~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 636 (849)
+.|++|+|++|.+.. ..|..|.++++|++|+|++| .+..+ |..+.++++|++|+|++|......+..+.++++|+
T Consensus 32 ~~l~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 107 (477)
T 2id5_A 32 TETRLLDLGKNRIKT---LNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLT 107 (477)
T ss_dssp TTCSEEECCSSCCCE---ECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCC
T ss_pred CCCcEEECCCCccce---ECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCC
Confidence 589999999999972 44678999999999999999 66655 78899999999999997765544445678999999
Q ss_pred EeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCeEEE
Q 003086 637 ALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSI 716 (849)
Q Consensus 637 ~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L 716 (849)
+|++++|.+....|..++.+++|+.|++..+. .....+..+..+++|+.|++++|.+.......+..+++|+.|+|
T Consensus 108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 183 (477)
T 2id5_A 108 KLDISENKIVILLDYMFQDLYNLKSLEVGDND----LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183 (477)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEEECCTT----CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEE
T ss_pred EEECCCCccccCChhHccccccCCEEECCCCc----cceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeC
Confidence 99999999987778889999999999976653 23444556889999999999999988888888999999999999
Q ss_pred EeecCCCCchhhhccccCCCCCCCeEEEeccCCC-CCCCcCCCCCCCCCceEEEeeCCccccccccccCcccccccceee
Q 003086 717 SCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGK-TSPVWLNPASLPMLRYLSVCSGNLSKMHDSFWGENNTVWKIEALL 795 (849)
Q Consensus 717 ~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~fp~~L~~L~ 795 (849)
++|.+... ....+..+++|+.|+++++... ..|... ...++|++|+|++|.+..++...+. .++ +|+.|+
T Consensus 184 ~~n~i~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~--~l~-~L~~L~ 254 (477)
T 2id5_A 184 RHLNINAI----RDYSFKRLYRLKVLEISHWPYLDTMTPNC--LYGLNLTSLSITHCNLTAVPYLAVR--HLV-YLRFLN 254 (477)
T ss_dssp ESCCCCEE----CTTCSCSCTTCCEEEEECCTTCCEECTTT--TTTCCCSEEEEESSCCCSCCHHHHT--TCT-TCCEEE
T ss_pred CCCcCcEe----ChhhcccCcccceeeCCCCccccccCccc--ccCccccEEECcCCcccccCHHHhc--Ccc-ccCeeE
Confidence 99876543 2234667889999999975322 223333 4456999999999999987754444 356 899999
Q ss_pred cccccccccccc-cccccccccceeeecc-------------cccCcccCcCCcccccce
Q 003086 796 FESLSDLGIEWT-RLQGVMPSLHIVNASW-------------CPELDSFPIEDVGFRGGV 841 (849)
Q Consensus 796 l~~l~~L~l~~~-~~~~~~p~L~~L~i~~-------------c~~L~~l~l~~n~l~~~~ 841 (849)
+.+.. +. ... .....+++|+.|++.+ |++|+.|.+++|.+++-.
T Consensus 255 Ls~n~-l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 312 (477)
T 2id5_A 255 LSYNP-IS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLE 312 (477)
T ss_dssp CCSSC-CC-EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCC
T ss_pred CCCCc-CC-ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeC
Confidence 88754 32 221 1224578888887664 578999999999998743
No 17
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.84 E-value=2.5e-20 Score=205.61 Aligned_cols=255 Identities=13% Similarity=0.061 Sum_probs=130.3
Q ss_pred hhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCcc-ccCCCCCcEEeeccccCCccCChhhhc
Q 003086 553 KFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPS-LKKLKNLQILDVSYCQNLKMLPSYVQS 631 (849)
Q Consensus 553 ~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~ 631 (849)
.|..+++|++|+|++|.+.. ..|..++.+++|++|+|++| .+..+|.. ++.+++|++|++++|......|..+.+
T Consensus 88 ~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 163 (390)
T 3o6n_A 88 AFAYAHTIQKLYMGFNAIRY---LPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSS
T ss_pred hccCCCCcCEEECCCCCCCc---CCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccC
Confidence 44444444444444444431 22233444444444444444 34444433 244444444444444433333334444
Q ss_pred ccCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCC
Q 003086 632 FIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLREL 711 (849)
Q Consensus 632 l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L 711 (849)
+++|++|++++|.+.. . .++.+++|+.|++..+. ...+...++|+.|++++|.+..... ...++|
T Consensus 164 l~~L~~L~l~~n~l~~-~--~~~~l~~L~~L~l~~n~---------l~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~L 228 (390)
T 3o6n_A 164 TTSLQNLQLSSNRLTH-V--DLSLIPSLFHANVSYNL---------LSTLAIPIAVEELDASHNSINVVRG---PVNVEL 228 (390)
T ss_dssp CTTCCEEECCSSCCSB-C--CGGGCTTCSEEECCSSC---------CSEEECCSSCSEEECCSSCCCEEEC---CCCSSC
T ss_pred CCCCCEEECCCCcCCc-c--ccccccccceeeccccc---------ccccCCCCcceEEECCCCeeeeccc---cccccc
Confidence 4444444444444431 1 12333444444322221 1112233445555555554433321 223567
Q ss_pred CeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCC-CCCcCCCCCCCCCceEEEeeCCccccccccccCcccccc
Q 003086 712 QFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKT-SPVWLNPASLPMLRYLSVCSGNLSKMHDSFWGENNTVWK 790 (849)
Q Consensus 712 ~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~fp~~ 790 (849)
+.|++++|.+++. ..+..+++|+.|+++++.... .|..+ ..+++|++|+|++|.+..++... ..+| +
T Consensus 229 ~~L~l~~n~l~~~------~~l~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~---~~l~-~ 296 (390)
T 3o6n_A 229 TILKLQHNNLTDT------AWLLNYPGLVEVDLSYNELEKIMYHPF--VKMQRLERLYISNNRLVALNLYG---QPIP-T 296 (390)
T ss_dssp CEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCEEESGGG--TTCSSCCEEECCSSCCCEEECSS---SCCT-T
T ss_pred cEEECCCCCCccc------HHHcCCCCccEEECCCCcCCCcChhHc--cccccCCEEECCCCcCcccCccc---CCCC-C
Confidence 7777777665542 234456777777777654332 24445 66777888888777777654332 2456 7
Q ss_pred cceeecccccccccccccccccccccceeeecc----------cccCcccCcCCcccccc
Q 003086 791 IEALLFESLSDLGIEWTRLQGVMPSLHIVNASW----------CPELDSFPIEDVGFRGG 840 (849)
Q Consensus 791 L~~L~l~~l~~L~l~~~~~~~~~p~L~~L~i~~----------c~~L~~l~l~~n~l~~~ 840 (849)
|+.|.+.++. +. ......+.+|+|+.|++++ +++|+.|.+++|.++..
T Consensus 297 L~~L~L~~n~-l~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 297 LKVLDLSHNH-LL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CCEEECCSSC-CC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHH
T ss_pred CCEEECCCCc-ce-ecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCccch
Confidence 7777777653 33 3333334567777777665 45777777888887753
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.83 E-value=1.3e-20 Score=220.87 Aligned_cols=310 Identities=13% Similarity=0.137 Sum_probs=221.4
Q ss_pred CcceeEeeccCcc----hHhhhhccCccchhcccccccccchhh-hhhhhhcCC------CcceEEecCCcccccccccc
Q 003086 509 LNCRHLGVTSDVE----SKQLISNLKLRALMSTTKTAEVNNIAS-NLATKFSEC------RYLRVLDISRSIFELPLKGL 577 (849)
Q Consensus 509 ~~~r~lsi~~~~~----~~~~~~~~~lrsl~~~~~~~~~~~~~~-~~~~~~~~l------~~Lr~L~L~~~~~~~~~~~~ 577 (849)
.+.+++.+..+.. +.....+++|++|.+.+.. .+.+ .+|..+.++ ++|++|+|++|.+. .+
T Consensus 249 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~----~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~----~i 320 (636)
T 4eco_A 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR----GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK----TF 320 (636)
T ss_dssp TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT----TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS----SC
T ss_pred CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC----CCccccchHHHHhhhccccCCCCCEEECCCCcCC----cc
Confidence 4566777664431 3334567788887665532 0344 567766665 89999999999886 67
Q ss_pred cc--ccCCCCccceEeccCCCCCc-ccCccccCCCCCcEEeeccccCCccCChhhhcccC-CcEeeccCCCCccccCccc
Q 003086 578 LS--QTGSLQHLSYLCLSNTHPLI-HLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQ-LRALDVTHCGSLQYLPKGF 653 (849)
Q Consensus 578 p~--~~~~l~~Lr~L~L~~~~~~~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~-L~~L~l~~~~~~~~~p~~i 653 (849)
|. .++.+++|++|+|++| .+. .+| .++.+++|++|++++|... .+|..+.++++ |++|++++|.+. .+|..+
T Consensus 321 p~~~~l~~l~~L~~L~L~~N-~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~ 396 (636)
T 4eco_A 321 PVETSLQKMKKLGMLECLYN-QLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIF 396 (636)
T ss_dssp CCHHHHTTCTTCCEEECCSC-CCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCC
T ss_pred CchhhhccCCCCCEEeCcCC-cCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhh
Confidence 88 8999999999999999 565 899 8899999999999977644 88888999999 999999999987 788877
Q ss_pred cccc--cccccCcccccCCCCCCCCCchhhh-------ccccccceeeeeccCcccchHhhcCCCCCCeEEEEeecCCCC
Q 003086 654 GKLL--NLEVLLGFRPARSSQPEGCRISELK-------NLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSISCFDSHGS 724 (849)
Q Consensus 654 ~~l~--~L~~L~~~~~~~~~~~~~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 724 (849)
+.++ +|+.|++..+.. .+..+..+. .+++|+.|++++|.+..++...+..+++|+.|+|++|.++..
T Consensus 397 ~~~~l~~L~~L~Ls~N~l----~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i 472 (636)
T 4eco_A 397 DAKSVSVMSAIDFSYNEI----GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472 (636)
T ss_dssp CTTCSSCEEEEECCSSCT----TTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBC
T ss_pred hhcccCccCEEECcCCcC----CCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCc
Confidence 7655 899998766532 333344455 677999999999988877767777899999999999877632
Q ss_pred chhhhccc----cCCCCCCCeEEEeccCCCCCCCcCCCCCCCCCceEEEeeCCccccccccccCcccccccceeeccccc
Q 003086 725 DLVAKIDE----LYPPEQLDELSLNFYPGKTSPVWLNPASLPMLRYLSVCSGNLSKMHDSFWGENNTVWKIEALLFESLS 800 (849)
Q Consensus 725 ~~~~~l~~----l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~fp~~L~~L~l~~l~ 800 (849)
. ...+.. +..+++|+.|+++++....+|..+....+++|+.|+|++|++..++..+. .++ +|+.|.+.+..
T Consensus 473 ~-~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~---~l~-~L~~L~Ls~N~ 547 (636)
T 4eco_A 473 P-KNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPL---NSS-TLKGFGIRNQR 547 (636)
T ss_dssp C-SSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGG---GCS-SCCEEECCSCB
T ss_pred C-HHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhh---cCC-CCCEEECCCCc
Confidence 1 111111 22344899999998766666766622389999999999999988655443 356 89999886543
Q ss_pred ccc-----cccccccccccccceeeeccc----------ccCcccCcCCccccc
Q 003086 801 DLG-----IEWTRLQGVMPSLHIVNASWC----------PELDSFPIEDVGFRG 839 (849)
Q Consensus 801 ~L~-----l~~~~~~~~~p~L~~L~i~~c----------~~L~~l~l~~n~l~~ 839 (849)
.+. -.+...-+.+++|+.|++++| ++|+.|.+++|.+..
T Consensus 548 ~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 548 DAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLDIKDNPNIS 601 (636)
T ss_dssp CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCCTTCCEEECCSCTTCE
T ss_pred ccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHhCcCCEEECcCCCCcc
Confidence 221 022222345777888887765 356666677776653
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.83 E-value=1.6e-20 Score=211.94 Aligned_cols=298 Identities=14% Similarity=0.153 Sum_probs=196.9
Q ss_pred CCcceeEeeccCcc-----hHhhhhccCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccc--
Q 003086 508 GLNCRHLGVTSDVE-----SKQLISNLKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQ-- 580 (849)
Q Consensus 508 ~~~~r~lsi~~~~~-----~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~-- 580 (849)
..+.+++.+..+.. ......+++|++|.+.+. .+....|..|.++++|++|+|++|.+.+ ..|..
T Consensus 53 l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-----~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~ 124 (455)
T 3v47_A 53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-----QFLQLETGAFNGLANLEVLTLTQCNLDG---AVLSGNF 124 (455)
T ss_dssp CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-----TTCEECTTTTTTCTTCCEEECTTSCCBT---HHHHSST
T ss_pred CccccEEECcCCcccceECcccccccccCCEEeCCCC-----ccCccChhhccCcccCCEEeCCCCCCCc---cccCccc
Confidence 34667777764422 223456788888877664 3444567889999999999999999873 34444
Q ss_pred cCCCCccceEeccCCCCCccc-Ccc-ccCCCCCcEEeeccccCCccCChhhhcc--------------------------
Q 003086 581 TGSLQHLSYLCLSNTHPLIHL-PPS-LKKLKNLQILDVSYCQNLKMLPSYVQSF-------------------------- 632 (849)
Q Consensus 581 ~~~l~~Lr~L~L~~~~~~~~l-p~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~l-------------------------- 632 (849)
++.+++|++|+|++| .+..+ |.. +..+++|++|++++|......|..+..+
T Consensus 125 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~ 203 (455)
T 3v47_A 125 FKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE 203 (455)
T ss_dssp TTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHH
T ss_pred ccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccc
Confidence 899999999999999 56555 655 8999999999999988777777766655
Q ss_pred --------cCCcEeeccCCCCccccCcccccc---ccccccCcccccCCC------CCCCCCchhhh--ccccccceeee
Q 003086 633 --------IQLRALDVTHCGSLQYLPKGFGKL---LNLEVLLGFRPARSS------QPEGCRISELK--NLTRLRKLGLQ 693 (849)
Q Consensus 633 --------~~L~~L~l~~~~~~~~~p~~i~~l---~~L~~L~~~~~~~~~------~~~~~~~~~l~--~l~~L~~L~l~ 693 (849)
++|++|++++|.+.+..|..+..+ ++|+.|++..+.... .........+. ..++|+.|+++
T Consensus 204 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 283 (455)
T 3v47_A 204 KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLS 283 (455)
T ss_dssp HHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECC
T ss_pred ccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEec
Confidence 345555555554443333333222 344444333221100 00001111122 23678888888
Q ss_pred eccCcccchHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCC-CCCCcCCCCCCCCCceEEEeeC
Q 003086 694 LTCGDEIEEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGK-TSPVWLNPASLPMLRYLSVCSG 772 (849)
Q Consensus 694 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~n 772 (849)
+|.+....+..+..+++|+.|+|++|.+.+. ....+..+++|+.|+++++... ..|.++ ..+++|++|+|++|
T Consensus 284 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~Ls~N 357 (455)
T 3v47_A 284 KSKIFALLKSVFSHFTDLEQLTLAQNEINKI----DDNAFWGLTHLLKLNLSQNFLGSIDSRMF--ENLDKLEVLDLSYN 357 (455)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECTTSCCCEE----CTTTTTTCTTCCEEECCSSCCCEECGGGG--TTCTTCCEEECCSS
T ss_pred CccccccchhhcccCCCCCEEECCCCccccc----ChhHhcCcccCCEEECCCCccCCcChhHh--cCcccCCEEECCCC
Confidence 8887777777788889999999988876542 1234556788999999876433 234555 77889999999998
Q ss_pred CccccccccccCcccccccceeeccccccccccccc-ccccccccceeeecccc
Q 003086 773 NLSKMHDSFWGENNTVWKIEALLFESLSDLGIEWTR-LQGVMPSLHIVNASWCP 825 (849)
Q Consensus 773 ~l~~~~~~~~~~~~fp~~L~~L~l~~l~~L~l~~~~-~~~~~p~L~~L~i~~c~ 825 (849)
.+..+++..+.. ++ +|++|++.+.. +. .... .-..+++|+.|++++++
T Consensus 358 ~l~~~~~~~~~~--l~-~L~~L~L~~N~-l~-~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 358 HIRALGDQSFLG--LP-NLKELALDTNQ-LK-SVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CCCEECTTTTTT--CT-TCCEEECCSSC-CS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred cccccChhhccc--cc-cccEEECCCCc-cc-cCCHhHhccCCcccEEEccCCC
Confidence 888775544433 56 88888888743 44 3322 22467889999988754
No 20
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=7e-20 Score=197.15 Aligned_cols=271 Identities=15% Similarity=0.127 Sum_probs=202.3
Q ss_pred cCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCC
Q 003086 529 LKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKL 608 (849)
Q Consensus 529 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L 608 (849)
+++++|.+.+. .+....+..|.++++|++|+|++|.+.. ..|..|+.+++|++|+|++| .+..+|..+.
T Consensus 54 ~~l~~L~l~~n-----~i~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~-- 122 (332)
T 2ft3_A 54 PDTTLLDLQNN-----DISELRKDDFKGLQHLYALVLVNNKISK---IHEKAFSPLRKLQKLYISKN-HLVEIPPNLP-- 122 (332)
T ss_dssp TTCCEEECCSS-----CCCEECTTTTTTCTTCCEEECCSSCCCE---ECGGGSTTCTTCCEEECCSS-CCCSCCSSCC--
T ss_pred CCCeEEECCCC-----cCCccCHhHhhCCCCCcEEECCCCccCc---cCHhHhhCcCCCCEEECCCC-cCCccCcccc--
Confidence 56777766554 3333456689999999999999999872 45788999999999999999 7889998766
Q ss_pred CCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCcc--ccCccccccccccccCcccccCCCCCCCCCchhhhcccc
Q 003086 609 KNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQ--YLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTR 686 (849)
Q Consensus 609 ~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~ 686 (849)
++|++|++++|......+..+.++++|++|++++|.+.. ..|..++.+ +|+.|++..+.... .+..+ .++
T Consensus 123 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-----l~~~~--~~~ 194 (332)
T 2ft3_A 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-----IPKDL--PET 194 (332)
T ss_dssp TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-----CCSSS--CSS
T ss_pred ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-----cCccc--cCC
Confidence 899999999877665555668999999999999998852 556677777 89999877664322 22222 278
Q ss_pred ccceeeeeccCcccchHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCCCcCCCCCCCCCce
Q 003086 687 LRKLGLQLTCGDEIEEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSPVWLNPASLPMLRY 766 (849)
Q Consensus 687 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~ 766 (849)
|+.|++++|.+....+..+..+++|+.|++++|.+.... ...+..+++|+.|+++++....+|.++ ..+++|+.
T Consensus 195 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~lp~~l--~~l~~L~~ 268 (332)
T 2ft3_A 195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE----NGSLSFLPTLRELHLDNNKLSRVPAGL--PDLKLLQV 268 (332)
T ss_dssp CSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC----TTGGGGCTTCCEEECCSSCCCBCCTTG--GGCTTCCE
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC----hhHhhCCCCCCEEECCCCcCeecChhh--hcCccCCE
Confidence 999999999888887778999999999999999876542 123456789999999987666668777 88999999
Q ss_pred EEEeeCCccccccccccCc----ccccccceeecccccccccccccccccccccceeeecccccCcccCcCCc
Q 003086 767 LSVCSGNLSKMHDSFWGEN----NTVWKIEALLFESLSDLGIEWTRLQGVMPSLHIVNASWCPELDSFPIEDV 835 (849)
Q Consensus 767 L~L~~n~l~~~~~~~~~~~----~fp~~L~~L~l~~l~~L~l~~~~~~~~~p~L~~L~i~~c~~L~~l~l~~n 835 (849)
|++++|.++.++...+... .++ .|+.|.+.+.+.. .+..... .+.+|++|+.+.+++|
T Consensus 269 L~l~~N~l~~~~~~~~~~~~~~~~~~-~l~~L~l~~N~~~--~~~~~~~--------~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 269 VYLHTNNITKVGVNDFCPVGFGVKRA-YYNGISLFNNPVP--YWEVQPA--------TFRCVTDRLAIQFGNY 330 (332)
T ss_dssp EECCSSCCCBCCTTSSSCSSCCSSSC-CBSEEECCSSSSC--GGGSCGG--------GGTTBCCSTTEEC---
T ss_pred EECCCCCCCccChhHccccccccccc-cccceEeecCccc--ccccCcc--------cccccchhhhhhcccc
Confidence 9999999998877665442 256 7888888776522 1222222 2344566666666655
No 21
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.83 E-value=3.9e-20 Score=216.76 Aligned_cols=254 Identities=15% Similarity=0.048 Sum_probs=152.2
Q ss_pred CCcceeEeeccCcc----hHhhhhccCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccccCC
Q 003086 508 GLNCRHLGVTSDVE----SKQLISNLKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGS 583 (849)
Q Consensus 508 ~~~~r~lsi~~~~~----~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~ 583 (849)
+.+.+++.+..+.- ......++++++|.+.+. .+....|..|.++++|++|+|++|.+.. ..|..|++
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-----~l~~i~~~~~~~l~~L~~L~Ls~n~l~~---~~p~~~~~ 102 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-----EIETIEDKAWHGLHHLSNLILTGNPIQS---FSPGSFSG 102 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-----CCCEECTTTTTTCTTCCEEECTTCCCCC---CCTTSSTT
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-----cccccCHHHhhchhhcCEeECCCCcccc---cChhhcCC
Confidence 45566776664432 223445677777766553 2333456677788888888888887762 34677788
Q ss_pred CCccceEeccCCCCCcccC-ccccCCCCCcEEeeccccCCc-cCChhhhcccCCcEeeccCCCCccccCcccccccccc-
Q 003086 584 LQHLSYLCLSNTHPLIHLP-PSLKKLKNLQILDVSYCQNLK-MLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLE- 660 (849)
Q Consensus 584 l~~Lr~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~- 660 (849)
+++|++|+|++| .+..+| ..++++++|++|++++|.... .+|..++++++|++|++++|.+.+..|..++.+++|+
T Consensus 103 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 181 (606)
T 3vq2_A 103 LTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ 181 (606)
T ss_dssp CTTCCEEECTTS-CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTT
T ss_pred cccCCEEEccCC-ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcccc
Confidence 888888888887 555555 567788888888888766544 5677788888888888888877766666677776665
Q ss_pred ---ccCcccccCCCCCCCCCchhhhccccccceeeeeccCc-ccchHhhcCCCCCCeEEEEeecCCCCc-----------
Q 003086 661 ---VLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGD-EIEEDALVNLRELQFLSISCFDSHGSD----------- 725 (849)
Q Consensus 661 ---~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~L~~~~~~~~~----------- 725 (849)
+|++..+. ........+. ..+|+.|++++|.+. ...+..+..+++|+.+.+..+.+....
T Consensus 182 ~l~~L~l~~n~----l~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~ 256 (606)
T 3vq2_A 182 VNLSLDMSLNP----IDFIQDQAFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256 (606)
T ss_dssp CCCEEECTTCC----CCEECTTTTT-TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGT
T ss_pred ccceeeccCCC----cceeCccccc-CceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhh
Confidence 45543332 2222222233 337888888887654 233355666666666665443322100
Q ss_pred -----------------hhhhccccCCCCCCCeEEEeccCCCCCCCcCCCCCCCCCceEEEeeCCccccc
Q 003086 726 -----------------LVAKIDELYPPEQLDELSLNFYPGKTSPVWLNPASLPMLRYLSVCSGNLSKMH 778 (849)
Q Consensus 726 -----------------~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~ 778 (849)
.......+..+++|+.|++.++.....| ++ ..+++|++|++++|.+..++
T Consensus 257 ~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l--~~~~~L~~L~l~~n~l~~lp 323 (606)
T 3vq2_A 257 GLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DV--PKHFKWQSLSIIRCQLKQFP 323 (606)
T ss_dssp TGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CC--CTTCCCSEEEEESCCCSSCC
T ss_pred hhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hc--cccccCCEEEcccccCcccc
Confidence 0001111334556666766665554445 33 55666666666666665444
No 22
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.83 E-value=1.1e-19 Score=197.15 Aligned_cols=274 Identities=14% Similarity=0.185 Sum_probs=213.8
Q ss_pred hhccCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccc
Q 003086 526 ISNLKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSL 605 (849)
Q Consensus 526 ~~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i 605 (849)
...++++++.+.+.... .++ .|..+++|++|++++|.+. .++. +..+++|++|+|++| .+..+| .+
T Consensus 41 ~~l~~L~~L~l~~~~i~------~~~-~~~~~~~L~~L~l~~n~i~----~~~~-~~~l~~L~~L~L~~n-~i~~~~-~~ 106 (347)
T 4fmz_A 41 EELESITKLVVAGEKVA------SIQ-GIEYLTNLEYLNLNGNQIT----DISP-LSNLVKLTNLYIGTN-KITDIS-AL 106 (347)
T ss_dssp HHHTTCSEEECCSSCCC------CCT-TGGGCTTCCEEECCSSCCC----CCGG-GTTCTTCCEEECCSS-CCCCCG-GG
T ss_pred hhcccccEEEEeCCccc------cch-hhhhcCCccEEEccCCccc----cchh-hhcCCcCCEEEccCC-cccCch-HH
Confidence 35778888888765322 233 4888999999999999987 4555 899999999999999 788876 59
Q ss_pred cCCCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccc
Q 003086 606 KKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLT 685 (849)
Q Consensus 606 ~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~ 685 (849)
..+++|++|++++|. +..+|. +..+++|++|++++|..... +..++.+++|+.|++..+... ....+..++
T Consensus 107 ~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~------~~~~~~~l~ 177 (347)
T 4fmz_A 107 QNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVK------DVTPIANLT 177 (347)
T ss_dssp TTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCC------CCGGGGGCT
T ss_pred cCCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcC------CchhhccCC
Confidence 999999999999776 445555 88999999999999976644 445899999999997766321 223388999
Q ss_pred cccceeeeeccCcccchHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCCCcCCCCCCCCCc
Q 003086 686 RLRKLGLQLTCGDEIEEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSPVWLNPASLPMLR 765 (849)
Q Consensus 686 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~ 765 (849)
+|+.|++++|.+..... +..+++|+.|++++|.+.... .+..+++|+.|+++++.....+. + ..+++|+
T Consensus 178 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~------~~~~~~~L~~L~l~~n~l~~~~~-~--~~l~~L~ 246 (347)
T 4fmz_A 178 DLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT------PVANMTRLNSLKIGNNKITDLSP-L--ANLSQLT 246 (347)
T ss_dssp TCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCG------GGGGCTTCCEEECCSSCCCCCGG-G--TTCTTCC
T ss_pred CCCEEEccCCccccccc--ccCCCccceeecccCCCCCCc------hhhcCCcCCEEEccCCccCCCcc-h--hcCCCCC
Confidence 99999999998776644 888999999999998766532 25568899999999876655454 3 7899999
Q ss_pred eEEEeeCCccccccccccCcccccccceeecccccccccccccccccccccceeeeccc-------------ccCcccCc
Q 003086 766 YLSVCSGNLSKMHDSFWGENNTVWKIEALLFESLSDLGIEWTRLQGVMPSLHIVNASWC-------------PELDSFPI 832 (849)
Q Consensus 766 ~L~L~~n~l~~~~~~~~~~~~fp~~L~~L~l~~l~~L~l~~~~~~~~~p~L~~L~i~~c-------------~~L~~l~l 832 (849)
+|++++|.+..++. + ..++ +|+.|.+.++. +. .+. ....+|+|+.|++++| ++|+.|.+
T Consensus 247 ~L~l~~n~l~~~~~--~--~~l~-~L~~L~l~~n~-l~-~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 318 (347)
T 4fmz_A 247 WLEIGTNQISDINA--V--KDLT-KLKMLNVGSNQ-IS-DIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318 (347)
T ss_dssp EEECCSSCCCCCGG--G--TTCT-TCCEEECCSSC-CC-CCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEEC
T ss_pred EEECCCCccCCChh--H--hcCC-CcCEEEccCCc-cC-CCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEc
Confidence 99999999987632 1 2466 99999998864 44 332 2346889999988764 57889999
Q ss_pred CCcccccce
Q 003086 833 EDVGFRGGV 841 (849)
Q Consensus 833 ~~n~l~~~~ 841 (849)
++|.+++..
T Consensus 319 ~~n~l~~~~ 327 (347)
T 4fmz_A 319 SQNHITDIR 327 (347)
T ss_dssp CSSSCCCCG
T ss_pred cCCcccccc
Confidence 999998753
No 23
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.83 E-value=9.9e-20 Score=203.97 Aligned_cols=247 Identities=16% Similarity=0.099 Sum_probs=131.0
Q ss_pred hhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcc
Q 003086 553 KFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSF 632 (849)
Q Consensus 553 ~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l 632 (849)
.|..+++|++|+|++|.+. .+| ++.+++|++|+|++| .+..+| ++.+++|++|++++|... .+| ++++
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~----~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~L~L~~N~l~-~l~--~~~l 126 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNIT----TLD--LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYLNCDTNKLT-KLD--VSQN 126 (457)
T ss_dssp TGGGCTTCSEEECCSSCCS----CCC--CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEEECCSSCCS-CCC--CTTC
T ss_pred hhcccCCCCEEEccCCcCC----eEc--cccCCCCCEEECcCC-CCceee--cCCCCcCCEEECCCCcCC-eec--CCCC
Confidence 4566666666666666665 233 566666666666666 555554 666666666666655433 243 5666
Q ss_pred cCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCC
Q 003086 633 IQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQ 712 (849)
Q Consensus 633 ~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 712 (849)
++|++|++++|.+.+ ++ ++.+++|+.|++..+... +.. .+..+++|+.|++++|.++.+. +..+++|+
T Consensus 127 ~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~----~~~--~~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~ 194 (457)
T 3bz5_A 127 PLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKI----TKL--DVTPQTQLTTLDCSFNKITELD---VSQNKLLN 194 (457)
T ss_dssp TTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCC----CCC--CCTTCTTCCEEECCSSCCCCCC---CTTCTTCC
T ss_pred CcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcc----ccc--ccccCCcCCEEECCCCccceec---cccCCCCC
Confidence 666666666666553 22 556666666665444211 111 3445566666666666554432 44555566
Q ss_pred eEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCCCcCCCCCCCCCceEEEeeCCcccccccccc---------
Q 003086 713 FLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSPVWLNPASLPMLRYLSVCSGNLSKMHDSFWG--------- 783 (849)
Q Consensus 713 ~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--------- 783 (849)
.|++++|.+++. .+..+++|+.|+++++....+| + ..+++|+.|++++|.+..++...+.
T Consensus 195 ~L~l~~N~l~~~-------~l~~l~~L~~L~Ls~N~l~~ip--~--~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~ 263 (457)
T 3bz5_A 195 RLNCDTNNITKL-------DLNQNIQLTFLDCSSNKLTEID--V--TPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQ 263 (457)
T ss_dssp EEECCSSCCSCC-------CCTTCTTCSEEECCSSCCSCCC--C--TTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTT
T ss_pred EEECcCCcCCee-------ccccCCCCCEEECcCCcccccC--c--cccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccC
Confidence 666655544432 1334455555555554333333 2 4455555555555555443321110
Q ss_pred ------------------CcccccccceeecccccccccccccccccccccceeeecccccCcccCcCCccccc
Q 003086 784 ------------------ENNTVWKIEALLFESLSDLGIEWTRLQGVMPSLHIVNASWCPELDSFPIEDVGFRG 839 (849)
Q Consensus 784 ------------------~~~fp~~L~~L~l~~l~~L~l~~~~~~~~~p~L~~L~i~~c~~L~~l~l~~n~l~~ 839 (849)
...++ +|+.|++.++..+. ... ..++.|+.|++++|++|+.|.+++|+|++
T Consensus 264 n~L~~L~l~~n~~~~~~~~~~l~-~L~~L~Ls~n~~l~-~l~---~~~~~L~~L~l~~~~~L~~L~L~~N~l~~ 332 (457)
T 3bz5_A 264 TDLLEIDLTHNTQLIYFQAEGCR-KIKELDVTHNTQLY-LLD---CQAAGITELDLSQNPKLVYLYLNNTELTE 332 (457)
T ss_dssp CCCSCCCCTTCTTCCEEECTTCT-TCCCCCCTTCTTCC-EEE---CTTCCCSCCCCTTCTTCCEEECTTCCCSC
T ss_pred CCCCEEECCCCccCCcccccccc-cCCEEECCCCcccc-eec---cCCCcceEechhhcccCCEEECCCCcccc
Confidence 01234 55555555554333 221 13455666666666677777777776666
No 24
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.83 E-value=5.9e-20 Score=215.21 Aligned_cols=308 Identities=18% Similarity=0.090 Sum_probs=197.9
Q ss_pred CCcceeEeeccCcc----hHhhhhccCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccccCC
Q 003086 508 GLNCRHLGVTSDVE----SKQLISNLKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGS 583 (849)
Q Consensus 508 ~~~~r~lsi~~~~~----~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~ 583 (849)
..+.+++.+..+.- ......+++|++|.+.+. .+....|..|.++++|++|+|++|.+.. ..+..+++
T Consensus 55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-----~l~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~ 126 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-----PIQSFSPGSFSGLTSLENLVAVETKLAS---LESFPIGQ 126 (606)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-----CCCCCCTTSSTTCTTCCEEECTTSCCCC---SSSSCCTT
T ss_pred CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-----cccccChhhcCCcccCCEEEccCCcccc---ccccccCC
Confidence 35677887765432 223456788898877654 3444568889999999999999999872 33477999
Q ss_pred CCccceEeccCCCCCc--ccCccccCCCCCcEEeeccccCCccCChhhhcccCCc----EeeccCCCCccccCccccccc
Q 003086 584 LQHLSYLCLSNTHPLI--HLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLR----ALDVTHCGSLQYLPKGFGKLL 657 (849)
Q Consensus 584 l~~Lr~L~L~~~~~~~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~----~L~l~~~~~~~~~p~~i~~l~ 657 (849)
+++|++|+|++| .+. .+|..++++++|++|++++|......|..++.+.+|+ +|++++|.+. .+|.......
T Consensus 127 l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~~ 204 (606)
T 3vq2_A 127 LITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGI 204 (606)
T ss_dssp CTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTTC
T ss_pred CCCCCEEeCCCC-cccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcc-eeCcccccCc
Confidence 999999999999 665 5899999999999999998887777777787777665 7999988877 4444433444
Q ss_pred cccccCcccccCC------------------------------------------------------CCCCCCCchhhhc
Q 003086 658 NLEVLLGFRPARS------------------------------------------------------SQPEGCRISELKN 683 (849)
Q Consensus 658 ~L~~L~~~~~~~~------------------------------------------------------~~~~~~~~~~l~~ 683 (849)
+|+.|++..+... +...+..+ .+..
T Consensus 205 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~-~~~~ 283 (606)
T 3vq2_A 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV-KFHC 283 (606)
T ss_dssp EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGG-SCGG
T ss_pred eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccccccccc-cccc
Confidence 6777765544210 11111111 2566
Q ss_pred cccccceeeeeccCcccchHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCCCcCCCCCCCC
Q 003086 684 LTRLRKLGLQLTCGDEIEEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSPVWLNPASLPM 763 (849)
Q Consensus 684 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~ 763 (849)
+++|+.|++.+|.+.... .+..+++|+.|++++|.+.. +..+ .+++|+.|+++++.... +..+ ..+++
T Consensus 284 l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l~~------lp~~-~l~~L~~L~l~~n~~~~-~~~~--~~l~~ 351 (606)
T 3vq2_A 284 LANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQLKQ------FPTL-DLPFLKSLTLTMNKGSI-SFKK--VALPS 351 (606)
T ss_dssp GTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCCSS------CCCC-CCSSCCEEEEESCSSCE-ECCC--CCCTT
T ss_pred CCCCCEEEecCccchhhh--hccccccCCEEEcccccCcc------cccC-CCCccceeeccCCcCcc-chhh--ccCCC
Confidence 777888888877665544 56777888888888776522 1233 56777777777663322 1122 56677
Q ss_pred CceEEEeeCCcccccc--ccccC---------------------cccccccceeecccccccccccc-ccccccccccee
Q 003086 764 LRYLSVCSGNLSKMHD--SFWGE---------------------NNTVWKIEALLFESLSDLGIEWT-RLQGVMPSLHIV 819 (849)
Q Consensus 764 L~~L~L~~n~l~~~~~--~~~~~---------------------~~fp~~L~~L~l~~l~~L~l~~~-~~~~~~p~L~~L 819 (849)
|++|++++|.+...+. ..+.. ..++ +|+.|.+.++.... ... .....+++|+.|
T Consensus 352 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~-~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L 429 (606)
T 3vq2_A 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLE-ELQHLDFQHSTLKR-VTEFSAFLSLEKLLYL 429 (606)
T ss_dssp CCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCT-TCCEEECTTSEEES-TTTTTTTTTCTTCCEE
T ss_pred CCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCC-CCCeeECCCCccCC-ccChhhhhccccCCEE
Confidence 7777777666654421 11110 0233 44444444432221 111 122346777777
Q ss_pred eecc-------------cccCcccCcCCcccccc
Q 003086 820 NASW-------------CPELDSFPIEDVGFRGG 840 (849)
Q Consensus 820 ~i~~-------------c~~L~~l~l~~n~l~~~ 840 (849)
++++ +++|+.|.+++|.+++.
T Consensus 430 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 463 (606)
T 3vq2_A 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN 463 (606)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred ECcCCCCCccchhhhcCCCCCCEEECCCCcCCCc
Confidence 7664 45777777888887763
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=7.2e-20 Score=213.26 Aligned_cols=266 Identities=13% Similarity=0.062 Sum_probs=138.6
Q ss_pred hhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCc-cccCCCCCcEEeeccccCCccCCh-hhh
Q 003086 553 KFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPP-SLKKLKNLQILDVSYCQNLKMLPS-YVQ 630 (849)
Q Consensus 553 ~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~-~i~ 630 (849)
.|.++++|++|+|++|.+.+ ..|..|+.+++|++|+|++| .+..+|. .++.+++|++|+|++|... .+|. .++
T Consensus 70 ~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~ 144 (597)
T 3oja_B 70 LLDSFRQVELLNLNDLQIEE---IDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFH 144 (597)
T ss_dssp HHHHCCCCSEEECTTSCCCE---ECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred HHccCCCCcEEECCCCCCCC---CChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhc
Confidence 34555555555555555541 22335555555555555555 3333332 3455555555555544333 3332 235
Q ss_pred cccCCcEeeccCCCCccccCccccccccccccCcccccCCCCC------------CCCCchhhhccccccceeeeeccCc
Q 003086 631 SFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQP------------EGCRISELKNLTRLRKLGLQLTCGD 698 (849)
Q Consensus 631 ~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~------------~~~~~~~l~~l~~L~~L~l~~~~~~ 698 (849)
++++|++|++++|.+.+..|..++.+++|+.|++..+...... ....+..+...++|+.|++++|.+.
T Consensus 145 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~ 224 (597)
T 3oja_B 145 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN 224 (597)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCC
T ss_pred cCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCccc
Confidence 5555555555555555444444555555555554433211000 0000111222334444555554433
Q ss_pred ccchHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCC-CCCCcCCCCCCCCCceEEEeeCCcccc
Q 003086 699 EIEEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGK-TSPVWLNPASLPMLRYLSVCSGNLSKM 777 (849)
Q Consensus 699 ~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~n~l~~~ 777 (849)
..... ..++|+.|+|++|.+++. ..+..+++|+.|+++++... ..|..+ +.+++|+.|+|++|.+..+
T Consensus 225 ~~~~~---~~~~L~~L~L~~n~l~~~------~~l~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~l 293 (597)
T 3oja_B 225 VVRGP---VNVELTILKLQHNNLTDT------AWLLNYPGLVEVDLSYNELEKIMYHPF--VKMQRLERLYISNNRLVAL 293 (597)
T ss_dssp EEECS---CCSCCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCEEESGGG--TTCSSCCEEECTTSCCCEE
T ss_pred ccccc---cCCCCCEEECCCCCCCCC------hhhccCCCCCEEECCCCccCCCCHHHh--cCccCCCEEECCCCCCCCC
Confidence 32221 124677777777665542 23445677777877765433 224455 6677788888877777765
Q ss_pred ccccccCcccccccceeecccccccccccccccccccccceeeecc----------cccCcccCcCCcccccc
Q 003086 778 HDSFWGENNTVWKIEALLFESLSDLGIEWTRLQGVMPSLHIVNASW----------CPELDSFPIEDVGFRGG 840 (849)
Q Consensus 778 ~~~~~~~~~fp~~L~~L~l~~l~~L~l~~~~~~~~~p~L~~L~i~~----------c~~L~~l~l~~n~l~~~ 840 (849)
+... ..+| +|+.|++.++. +. .+....+.+|+|+.|++++ +++|+.|.+++|.+++.
T Consensus 294 ~~~~---~~l~-~L~~L~Ls~N~-l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 294 NLYG---QPIP-TLKVLDLSHNH-LL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp ECSS---SCCT-TCCEEECCSSC-CC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHH
T ss_pred Cccc---ccCC-CCcEEECCCCC-CC-ccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCCCCh
Confidence 4332 2356 77777777654 33 3333334567777777665 45677777888887753
No 26
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=6.6e-20 Score=196.44 Aligned_cols=228 Identities=19% Similarity=0.207 Sum_probs=153.9
Q ss_pred CCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcccCC
Q 003086 556 ECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQL 635 (849)
Q Consensus 556 ~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L 635 (849)
....++.|+|++|.+. .+|..++.+++|++|+|++| .+..+|..++.+++|++|++++|... .+|..++++++|
T Consensus 79 ~~~~l~~L~L~~n~l~----~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L 152 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP----QFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRL 152 (328)
T ss_dssp TSTTCCEEEEESSCCS----SCCSCGGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTC
T ss_pred cccceeEEEccCCCch----hcChhhhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCC
Confidence 4578999999999987 78999999999999999999 77799999999999999999987655 889999999999
Q ss_pred cEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCeEE
Q 003086 636 RALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLS 715 (849)
Q Consensus 636 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 715 (849)
++|++++|...+.+|..++... ....+..+++|+.|++++|.++.+ +..+..+++|+.|+
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~~-------------------~~~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~ 212 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLASTD-------------------ASGEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLK 212 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEEC--------------------CCCEEESTTCCEEEEEEECCCCC-CGGGGGCTTCCEEE
T ss_pred CEEECCCCCCccccChhHhhcc-------------------chhhhccCCCCCEEECcCCCcCcc-hHhhcCCCCCCEEE
Confidence 9999999988878887665410 011245566677777777665533 34466667777777
Q ss_pred EEeecCCCCchhhhccccCCCCCCCeEEEecc-CCCCCCCcCCCCCCCCCceEEEeeCCccccccccccCccccccccee
Q 003086 716 ISCFDSHGSDLVAKIDELYPPEQLDELSLNFY-PGKTSPVWLNPASLPMLRYLSVCSGNLSKMHDSFWGENNTVWKIEAL 794 (849)
Q Consensus 716 L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~-~~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~fp~~L~~L 794 (849)
|++|.+.+. ...+..+++|+.|+++++ .....|.++ +.+++|++|+|++|++....+..++ .++ +|+.|
T Consensus 213 L~~N~l~~l-----~~~l~~l~~L~~L~Ls~n~~~~~~p~~~--~~l~~L~~L~L~~n~~~~~~p~~~~--~l~-~L~~L 282 (328)
T 4fcg_A 213 IRNSPLSAL-----GPAIHHLPKLEELDLRGCTALRNYPPIF--GGRAPLKRLILKDCSNLLTLPLDIH--RLT-QLEKL 282 (328)
T ss_dssp EESSCCCCC-----CGGGGGCTTCCEEECTTCTTCCBCCCCT--TCCCCCCEEECTTCTTCCBCCTTGG--GCT-TCCEE
T ss_pred ccCCCCCcC-----chhhccCCCCCEEECcCCcchhhhHHHh--cCCCCCCEEECCCCCchhhcchhhh--cCC-CCCEE
Confidence 776655532 112444566777777653 222335555 6677777777776655433332222 245 66666
Q ss_pred ecccccccccccccccccccccceee
Q 003086 795 LFESLSDLGIEWTRLQGVMPSLHIVN 820 (849)
Q Consensus 795 ~l~~l~~L~l~~~~~~~~~p~L~~L~ 820 (849)
++.++..+. ..+...+.+|+|+.+.
T Consensus 283 ~L~~n~~~~-~iP~~l~~L~~L~~l~ 307 (328)
T 4fcg_A 283 DLRGCVNLS-RLPSLIAQLPANCIIL 307 (328)
T ss_dssp ECTTCTTCC-CCCGGGGGSCTTCEEE
T ss_pred eCCCCCchh-hccHHHhhccCceEEe
Confidence 666655554 3333333344444333
No 27
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.82 E-value=6.2e-20 Score=215.00 Aligned_cols=108 Identities=13% Similarity=0.037 Sum_probs=53.4
Q ss_pred hhhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCccc-CccccCCCCCcEEeeccccCCccCCh
Q 003086 549 NLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHL-PPSLKKLKNLQILDVSYCQNLKMLPS 627 (849)
Q Consensus 549 ~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~ 627 (849)
..|..|.++++|++|+|++|.+.. ..|..|+++++|++|+|++| .+..+ |..++.+++|++|++++|.....-+.
T Consensus 72 ~~~~~~~~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~n-~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~ 147 (606)
T 3t6q_A 72 IHEDTFQSQHRLDTLVLTANPLIF---MAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNHISSIKLP 147 (606)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCSE---ECTTTTSSCTTCCEEECTTS-CCSCGGGSCCTTCTTCCEEECCSSCCCCCCCC
T ss_pred eChhhccCccccCeeeCCCCcccc---cChhhhcccccccEeecccc-CcccCCcchhccCCcccEEECCCCcccccCcc
Confidence 334455555555555555555541 33445555555555555555 34433 34455555555555554443331112
Q ss_pred hhhcccCCcEeeccCCCCccccCcccccccccc
Q 003086 628 YVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLE 660 (849)
Q Consensus 628 ~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 660 (849)
.+..+++|++|++++|.+....|..++.+++|+
T Consensus 148 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3t6q_A 148 KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT 180 (606)
T ss_dssp TTCCCTTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred cccCCcccCEEEcccCcccccChhhhhhhcccc
Confidence 223355555555555555533344455555555
No 28
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.82 E-value=1.4e-19 Score=219.34 Aligned_cols=274 Identities=16% Similarity=0.125 Sum_probs=154.8
Q ss_pred CCcceeEeeccCcc----hHhhhhccCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccccCC
Q 003086 508 GLNCRHLGVTSDVE----SKQLISNLKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGS 583 (849)
Q Consensus 508 ~~~~r~lsi~~~~~----~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~ 583 (849)
+.+.+++.+..+.- ......+++|++|.+.+... .....|..|.++++|++|+|++|.+.. ..|..|++
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~----~~~i~~~~f~~L~~L~~L~Ls~N~l~~---~~p~~~~~ 95 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT----PLTIDKEAFRNLPNLRILDLGSSKIYF---LHPDAFQG 95 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCC----CCEECTTTTSSCTTCCEEECTTCCCCE---ECTTSSCS
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCC----ccccCHHHhcCCCCCCEEECCCCcCcc---cCHhHccC
Confidence 45667776664332 22344567777776655411 111236678888888888888888762 45778888
Q ss_pred CCccceEeccCCCCCcccCcc--ccCCCCCcEEeeccccCCccCC-hhhhcccCCcEeeccCCCCccccCcccccc--cc
Q 003086 584 LQHLSYLCLSNTHPLIHLPPS--LKKLKNLQILDVSYCQNLKMLP-SYVQSFIQLRALDVTHCGSLQYLPKGFGKL--LN 658 (849)
Q Consensus 584 l~~Lr~L~L~~~~~~~~lp~~--i~~L~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l--~~ 658 (849)
+++|++|+|++|.....+|.. ++++++|++|+|++|......| ..++++++|++|++++|.+.+..|..++.+ ++
T Consensus 96 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~ 175 (844)
T 3j0a_A 96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT 175 (844)
T ss_dssp CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCS
T ss_pred CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCc
Confidence 888888888888333335554 7888888888888776555433 567888888888888887765555544443 33
Q ss_pred ------------------------------ccccCcccccCCCCCCCC--------------------------------
Q 003086 659 ------------------------------LEVLLGFRPARSSQPEGC-------------------------------- 676 (849)
Q Consensus 659 ------------------------------L~~L~~~~~~~~~~~~~~-------------------------------- 676 (849)
|+.|++..+.........
T Consensus 176 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~ 255 (844)
T 3j0a_A 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255 (844)
T ss_dssp SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred cceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence 444443332110000000
Q ss_pred Cchhhhc--cccccceeeeeccCcccchHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCC-CCC
Q 003086 677 RISELKN--LTRLRKLGLQLTCGDEIEEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGK-TSP 753 (849)
Q Consensus 677 ~~~~l~~--l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~p 753 (849)
....+.. .++|+.|++++|.+....+..+..+++|+.|+|++|.+... ....+..+++|+.|+++++... ..|
T Consensus 256 ~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~ 331 (844)
T 3j0a_A 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI----ADEAFYGLDNLQVLNLSYNLLGELYS 331 (844)
T ss_dssp GGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEE----CTTTTTTCSSCCEEEEESCCCSCCCS
T ss_pred ChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCC----ChHHhcCCCCCCEEECCCCCCCccCH
Confidence 0000111 14566666666655555455566666777777766655432 1123445566666666654322 223
Q ss_pred CcCCCCCCCCCceEEEeeCCccccccccccCcccccccceeecc
Q 003086 754 VWLNPASLPMLRYLSVCSGNLSKMHDSFWGENNTVWKIEALLFE 797 (849)
Q Consensus 754 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~fp~~L~~L~l~ 797 (849)
.++ ..+++|+.|++++|.+..++...+. .++ +|+.|.+.
T Consensus 332 ~~~--~~l~~L~~L~L~~N~i~~~~~~~~~--~l~-~L~~L~Ls 370 (844)
T 3j0a_A 332 SNF--YGLPKVAYIDLQKNHIAIIQDQTFK--FLE-KLQTLDLR 370 (844)
T ss_dssp CSC--SSCTTCCEEECCSCCCCCCCSSCSC--SCC-CCCEEEEE
T ss_pred HHh--cCCCCCCEEECCCCCCCccChhhhc--CCC-CCCEEECC
Confidence 444 5566666666666666555443332 133 44444444
No 29
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=9.7e-20 Score=216.38 Aligned_cols=274 Identities=15% Similarity=0.096 Sum_probs=172.4
Q ss_pred CCcceeEeeccCcc----hHhhhhccCccchhcccccccccchhhhhhhhhcCCCcceEEecCCcccccccccccc-ccC
Q 003086 508 GLNCRHLGVTSDVE----SKQLISNLKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLS-QTG 582 (849)
Q Consensus 508 ~~~~r~lsi~~~~~----~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~-~~~ 582 (849)
+.+++++.+..+.- ......++++++|.+.+. .+....|..|.++++|++|+|++|.+. .+|. .|+
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-----~l~~~~~~~~~~l~~L~~L~L~~n~l~----~l~~~~~~ 94 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-----TISKLEPELCQKLPMLKVLNLQHNELS----QLSDKTFA 94 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS-----CCCCCCTTHHHHCTTCCEEECCSSCCC----CCCTTTTT
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC-----ccCccCHHHHhcccCcCEEECCCCccC----ccChhhhc
Confidence 45677777765432 223556778888876553 333455677888888888888888876 4554 588
Q ss_pred CCCccceEeccCCCCCcccC-ccccCCCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCcccc--ccccc
Q 003086 583 SLQHLSYLCLSNTHPLIHLP-PSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFG--KLLNL 659 (849)
Q Consensus 583 ~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~--~l~~L 659 (849)
++++|++|+|++| .+..+| ..++++++|++|++++|......|..++++++|++|++++|.+.+..+..++ .+++|
T Consensus 95 ~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 173 (680)
T 1ziw_A 95 FCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173 (680)
T ss_dssp TCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEE
T ss_pred cCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccc
Confidence 8888888888888 566665 5678888888888887776666677777888888888888776644443332 34566
Q ss_pred cccCcccccCCC-----------------------------------------------CCCCCCchhhhcccc--ccce
Q 003086 660 EVLLGFRPARSS-----------------------------------------------QPEGCRISELKNLTR--LRKL 690 (849)
Q Consensus 660 ~~L~~~~~~~~~-----------------------------------------------~~~~~~~~~l~~l~~--L~~L 690 (849)
+.|++..+.... ...+..+..+..++. |+.|
T Consensus 174 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L 253 (680)
T 1ziw_A 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 253 (680)
T ss_dssp SEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEE
T ss_pred cEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEE
Confidence 666654432111 011111223444433 7777
Q ss_pred eeeeccCcccchHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCC------CCCCc--CCCCCCC
Q 003086 691 GLQLTCGDEIEEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGK------TSPVW--LNPASLP 762 (849)
Q Consensus 691 ~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~------~~p~~--~~~~~l~ 762 (849)
++++|.+....+..+..+++|+.|++++|.+.+. ....+..+++|+.|++.++... .+|.+ .....++
T Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL----FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEE----CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred ECCCCCcCccCcccccCcccccEeeCCCCccCcc----ChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 7777776666666677778888888877755432 1123455677777777643211 11220 0126678
Q ss_pred CCceEEEeeCCccccccccccCcccccccceeeccc
Q 003086 763 MLRYLSVCSGNLSKMHDSFWGENNTVWKIEALLFES 798 (849)
Q Consensus 763 ~L~~L~L~~n~l~~~~~~~~~~~~fp~~L~~L~l~~ 798 (849)
+|++|++++|.+..++...+.. ++ +|++|.+.+
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~--l~-~L~~L~Ls~ 362 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTG--LI-NLKYLSLSN 362 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTT--CT-TCCEEECTT
T ss_pred CCCEEECCCCccCCCChhHhcc--cc-CCcEEECCC
Confidence 8888888888777665544432 45 677776654
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.81 E-value=2.4e-19 Score=197.71 Aligned_cols=259 Identities=15% Similarity=0.092 Sum_probs=185.1
Q ss_pred hhccCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccc-cCCCCccceEeccCCCCCccc-Cc
Q 003086 526 ISNLKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQ-TGSLQHLSYLCLSNTHPLIHL-PP 603 (849)
Q Consensus 526 ~~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~-~~~l~~Lr~L~L~~~~~~~~l-p~ 603 (849)
..++++++|.+.+. .+....+..|.++++|++|+|++|.+. .+|.. ++.+++|++|+|++| .+..+ |.
T Consensus 90 ~~l~~L~~L~L~~n-----~l~~~~~~~~~~l~~L~~L~L~~n~l~----~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~ 159 (390)
T 3o6n_A 90 AYAHTIQKLYMGFN-----AIRYLPPHVFQNVPLLTVLVLERNDLS----SLPRGIFHNTPKLTTLSMSNN-NLERIEDD 159 (390)
T ss_dssp TTCTTCCEEECCSS-----CCCCCCTTTTTTCTTCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSS-CCCBCCTT
T ss_pred cCCCCcCEEECCCC-----CCCcCCHHHhcCCCCCCEEECCCCccC----cCCHHHhcCCCCCcEEECCCC-ccCccChh
Confidence 44566666655443 334455677899999999999999987 56665 589999999999999 56655 45
Q ss_pred cccCCCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhc
Q 003086 604 SLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKN 683 (849)
Q Consensus 604 ~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~ 683 (849)
.+..+++|++|++++|.... ++ +..+++|++|++++|.+.. +....+|+.|++..+... .. ....
T Consensus 160 ~~~~l~~L~~L~l~~n~l~~-~~--~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~----~~---~~~~ 224 (390)
T 3o6n_A 160 TFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSIN----VV---RGPV 224 (390)
T ss_dssp TTSSCTTCCEEECCSSCCSB-CC--GGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCC----EE---ECCC
T ss_pred hccCCCCCCEEECCCCcCCc-cc--cccccccceeecccccccc-----cCCCCcceEEECCCCeee----ec---cccc
Confidence 68999999999999776443 33 6778999999999987652 234457788876555321 11 1123
Q ss_pred cccccceeeeeccCcccchHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCCCcCCCCCCCC
Q 003086 684 LTRLRKLGLQLTCGDEIEEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSPVWLNPASLPM 763 (849)
Q Consensus 684 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~ 763 (849)
+++|+.|++++|.+... ..+..+++|+.|++++|.+.+. ....+..+++|+.|+++++.....|..+ ..+|+
T Consensus 225 ~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~l~~ 296 (390)
T 3o6n_A 225 NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKI----MYHPFVKMQRLERLYISNNRLVALNLYG--QPIPT 296 (390)
T ss_dssp CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEE----ESGGGTTCSSCCEEECCSSCCCEEECSS--SCCTT
T ss_pred cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCc----ChhHccccccCCEEECCCCcCcccCccc--CCCCC
Confidence 46888888888876654 4677888899999888866543 2234566788888888877655445444 67888
Q ss_pred CceEEEeeCCccccccccccCcccccccceeecccccccccccccccccccccceeeecccc
Q 003086 764 LRYLSVCSGNLSKMHDSFWGENNTVWKIEALLFESLSDLGIEWTRLQGVMPSLHIVNASWCP 825 (849)
Q Consensus 764 L~~L~L~~n~l~~~~~~~~~~~~fp~~L~~L~l~~l~~L~l~~~~~~~~~p~L~~L~i~~c~ 825 (849)
|++|+|++|.+..++..+ ..++ +|+.|.+.++. +. ... ...+++|+.|++.+++
T Consensus 297 L~~L~L~~n~l~~~~~~~---~~l~-~L~~L~L~~N~-i~-~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 297 LKVLDLSHNHLLHVERNQ---PQFD-RLENLYLDHNS-IV-TLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCEEECCSSCCCCCGGGH---HHHT-TCSEEECCSSC-CC-CCC--CCTTCCCSEEECCSSC
T ss_pred CCEEECCCCcceecCccc---cccC-cCCEEECCCCc-cc-eeC--chhhccCCEEEcCCCC
Confidence 999999888888765543 2466 88888888755 33 222 4568888888888765
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.81 E-value=6.8e-19 Score=198.77 Aligned_cols=82 Identities=18% Similarity=0.250 Sum_probs=44.8
Q ss_pred hhhccCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCcc
Q 003086 525 LISNLKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPS 604 (849)
Q Consensus 525 ~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~ 604 (849)
...++++++|.+.+.. +. .++. |.++++|++|++++|.+. .++. ++.+++|++|+|++| .+..+|.
T Consensus 64 ~~~l~~L~~L~Ls~n~-----l~-~~~~-~~~l~~L~~L~l~~n~l~----~~~~-~~~l~~L~~L~L~~n-~l~~~~~- 129 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQ-----LT-DITP-LKNLTKLVDILMNNNQIA----DITP-LANLTNLTGLTLFNN-QITDIDP- 129 (466)
T ss_dssp GGGCTTCCEEECCSSC-----CC-CCGG-GTTCTTCCEEECCSSCCC----CCGG-GTTCTTCCEEECCSS-CCCCCGG-
T ss_pred hhhhcCCCEEECCCCc-----cC-Cchh-hhccccCCEEECCCCccc----cChh-hcCCCCCCEEECCCC-CCCCChH-
Confidence 3445566666554432 11 1222 566666666666666654 2333 566666666666666 5555544
Q ss_pred ccCCCCCcEEeecccc
Q 003086 605 LKKLKNLQILDVSYCQ 620 (849)
Q Consensus 605 i~~L~~L~~L~L~~~~ 620 (849)
+..+++|++|++++|.
T Consensus 130 ~~~l~~L~~L~l~~n~ 145 (466)
T 1o6v_A 130 LKNLTNLNRLELSSNT 145 (466)
T ss_dssp GTTCTTCSEEEEEEEE
T ss_pred HcCCCCCCEEECCCCc
Confidence 5666666666666544
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=208.41 Aligned_cols=61 Identities=10% Similarity=-0.048 Sum_probs=36.1
Q ss_pred CCCCCCCeEEEeccCCCC-CCCcCCCCCCCCCceEEEeeCCcccccc--ccccCcccccccceeecccc
Q 003086 734 YPPEQLDELSLNFYPGKT-SPVWLNPASLPMLRYLSVCSGNLSKMHD--SFWGENNTVWKIEALLFESL 799 (849)
Q Consensus 734 ~~~~~L~~L~l~~~~~~~-~p~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~~fp~~L~~L~l~~l 799 (849)
..+++|++|+++++.... .|.++ ..+++|++|++++|.+..++. ..++ .++ +|++|++.++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~l~~~~~~~~--~l~-~L~~L~Ls~N 384 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENC--GHLTELETLILQMNQLKELSKIAEMTT--QMK-SLQQLDISQN 384 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTC--CCCSSCCEEECCSSCCCBHHHHHHHHT--TCT-TCCEEECCSS
T ss_pred hhCCcccEEEeECCccChhhhhhh--ccCCCCCEEEccCCccCccccchHHHh--hCC-CCCEEECCCC
Confidence 356677777777654332 35555 677788888888777765432 1111 244 6666666543
No 33
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=206.54 Aligned_cols=122 Identities=19% Similarity=0.167 Sum_probs=82.4
Q ss_pred CcceeEeeccCcc----hHhhhhccCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccccCCC
Q 003086 509 LNCRHLGVTSDVE----SKQLISNLKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSL 584 (849)
Q Consensus 509 ~~~r~lsi~~~~~----~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l 584 (849)
.+.+++.+..+.- ......+++|++|.+.+. .+....|..|.++++|++|+|++|.+. .+|.. .+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-----~l~~~~~~~~~~l~~L~~L~Ls~N~l~----~lp~~--~l 89 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHN-----RIQYLDISVFKFNQELEYLDLSHNKLV----KISCH--PT 89 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-----CCCEEEGGGGTTCTTCCEEECCSSCCC----EEECC--CC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCC-----ccCCcChHHhhcccCCCEEecCCCcee----ecCcc--cc
Confidence 4567777664432 234556777888766654 333455777888888888888888876 56665 78
Q ss_pred CccceEeccCCCCCcc--cCccccCCCCCcEEeeccccCCccCChhhhcccCC--cEeeccCCCC
Q 003086 585 QHLSYLCLSNTHPLIH--LPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQL--RALDVTHCGS 645 (849)
Q Consensus 585 ~~Lr~L~L~~~~~~~~--lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L--~~L~l~~~~~ 645 (849)
++|++|+|++| .+.. +|..++.+++|++|++++|.... ..+..+++| ++|++++|.+
T Consensus 90 ~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 90 VNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred CCccEEeccCC-ccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence 88888888888 5543 56788888888888888765432 334555555 6666666555
No 34
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.81 E-value=4.9e-20 Score=213.17 Aligned_cols=177 Identities=18% Similarity=0.188 Sum_probs=114.6
Q ss_pred CcceeEeeccCcc----hHhhhhccCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccccCCC
Q 003086 509 LNCRHLGVTSDVE----SKQLISNLKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSL 584 (849)
Q Consensus 509 ~~~r~lsi~~~~~----~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l 584 (849)
...+++.+..+.- ......++++++|.+.+. .+....+..|.++++|++|+|++|.+.+ ..|..|+.+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-----~i~~~~~~~~~~l~~L~~L~Ls~n~l~~---~~~~~~~~l 97 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-----RINTIEGDAFYSLGSLEHLDLSDNHLSS---LSSSWFGPL 97 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-----CCCEECTTTTTTCTTCCEEECTTSCCCS---CCHHHHTTC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCC-----CcCccChhhccccccCCEEECCCCccCc---cCHHHhccC
Confidence 4566666654321 123345667777766553 2333455667777888888888887762 333447778
Q ss_pred CccceEeccCCCCCc--ccCccccCCCCCcEEeeccccCCccCC-hhhhcccCCcEeeccCCCCccccCccccccccccc
Q 003086 585 QHLSYLCLSNTHPLI--HLPPSLKKLKNLQILDVSYCQNLKMLP-SYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEV 661 (849)
Q Consensus 585 ~~Lr~L~L~~~~~~~--~lp~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 661 (849)
++|++|+|++| .+. ..|..++++++|++|++++|.....+| ..+.++++|++|++++|.+.+..|..++.+++|+.
T Consensus 98 ~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 176 (549)
T 2z81_A 98 SSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176 (549)
T ss_dssp TTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred CCCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCce
Confidence 88888888877 555 345667778888888887776555554 46777788888888887777667777777777877
Q ss_pred cCcccccCCCCCCCCCchh-hhccccccceeeeeccCcc
Q 003086 662 LLGFRPARSSQPEGCRISE-LKNLTRLRKLGLQLTCGDE 699 (849)
Q Consensus 662 L~~~~~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~ 699 (849)
|++..+.. ...+.. +..+++|+.|++++|.+..
T Consensus 177 L~l~~n~~-----~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 177 LTLHLSES-----AFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp EEEECSBS-----TTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred EecccCcc-----cccchhhHhhcccccEEEccCCcccc
Confidence 77655421 111222 3457788888888776554
No 35
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=220.11 Aligned_cols=183 Identities=17% Similarity=0.107 Sum_probs=135.2
Q ss_pred hccCccchhcccccccccchhhhhhhhhcCCCcceEEecCCcccccccccc-ccccCCCCccceEeccCCCCCcccCccc
Q 003086 527 SNLKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGL-LSQTGSLQHLSYLCLSNTHPLIHLPPSL 605 (849)
Q Consensus 527 ~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~-p~~~~~l~~Lr~L~L~~~~~~~~lp~~i 605 (849)
-.+++++|.+.++ .+....+..|.++++|++|+|++|.... .+ |..|+++++|++|+|++|......|..+
T Consensus 22 lp~~l~~LdLs~N-----~i~~i~~~~~~~l~~L~~LdLs~n~~~~---~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~ 93 (844)
T 3j0a_A 22 VLNTTERLLLSFN-----YIRTVTASSFPFLEQLQLLELGSQYTPL---TIDKEAFRNLPNLRILDLGSSKIYFLHPDAF 93 (844)
T ss_dssp SCTTCCEEEEESC-----CCCEECSSSCSSCCSCSEEEECTTCCCC---EECTTTTSSCTTCCEEECTTCCCCEECTTSS
T ss_pred CCCCcCEEECCCC-----cCCccChhHCcccccCeEEeCCCCCCcc---ccCHHHhcCCCCCCEEECCCCcCcccCHhHc
Confidence 3467777766553 3444567889999999999999996542 34 7889999999999999994334448899
Q ss_pred cCCCCCcEEeeccccCCccCChh--hhcccCCcEeeccCCCCccccC-ccccccccccccCcccccCCCCCCCCCchhhh
Q 003086 606 KKLKNLQILDVSYCQNLKMLPSY--VQSFIQLRALDVTHCGSLQYLP-KGFGKLLNLEVLLGFRPARSSQPEGCRISELK 682 (849)
Q Consensus 606 ~~L~~L~~L~L~~~~~~~~lp~~--i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~ 682 (849)
+++++|++|+|++|......|.. +.++++|++|++++|.+.+..+ ..++++++|++|++..+.. ....+..+.
T Consensus 94 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i----~~~~~~~l~ 169 (844)
T 3j0a_A 94 QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI----FLVCEHELE 169 (844)
T ss_dssp CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC----CCCCSGGGH
T ss_pred cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC----CeeCHHHcc
Confidence 99999999999988877766665 8899999999999999875544 5689999999999766532 333445566
Q ss_pred cc--ccccceeeeeccCcccchHhhcCCC------CCCeEEEEeecC
Q 003086 683 NL--TRLRKLGLQLTCGDEIEEDALVNLR------ELQFLSISCFDS 721 (849)
Q Consensus 683 ~l--~~L~~L~l~~~~~~~~~~~~l~~~~------~L~~L~L~~~~~ 721 (849)
.+ ++|+.|+++.|.+....+..+..+. +|+.|++++|.+
T Consensus 170 ~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 216 (844)
T 3j0a_A 170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216 (844)
T ss_dssp HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCS
T ss_pred cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcC
Confidence 55 7788888887765554433333333 277777776643
No 36
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.81 E-value=5.5e-20 Score=212.77 Aligned_cols=152 Identities=16% Similarity=0.122 Sum_probs=106.7
Q ss_pred CCcceeEeeccCcc----hHhhhhccCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccccCC
Q 003086 508 GLNCRHLGVTSDVE----SKQLISNLKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGS 583 (849)
Q Consensus 508 ~~~~r~lsi~~~~~----~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~ 583 (849)
..+.+++.+..+.- ......+++|++|.+.+. .+....+..|.++++|++|+|++|.+.. ...|..++.
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-----~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~~ 121 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-----HLSSLSSSWFGPLSSLKYLNLMGNPYQT--LGVTSLFPN 121 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-----CCCSCCHHHHTTCTTCCEEECTTCCCSS--SCSSCSCTT
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCC-----ccCccCHHHhccCCCCcEEECCCCcccc--cchhhhhhc
Confidence 34566776664432 223445677777766553 3344556668888888888888888762 134567888
Q ss_pred CCccceEeccCCCCCcccC-ccccCCCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCcc-ccccccccc
Q 003086 584 LQHLSYLCLSNTHPLIHLP-PSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKG-FGKLLNLEV 661 (849)
Q Consensus 584 l~~Lr~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~ 661 (849)
+++|++|++++|..+..+| ..+..+++|++|++++|......|..++++++|++|+++.|... ..|.. ++.+++|+.
T Consensus 122 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~ 200 (549)
T 2z81_A 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRY 200 (549)
T ss_dssp CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSE
T ss_pred cCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccE
Confidence 8888888888885467776 46888888888888888777778888888888888888888765 44433 345777877
Q ss_pred cCcccc
Q 003086 662 LLGFRP 667 (849)
Q Consensus 662 L~~~~~ 667 (849)
|++..+
T Consensus 201 L~L~~n 206 (549)
T 2z81_A 201 LELRDT 206 (549)
T ss_dssp EEEESC
T ss_pred EEccCC
Confidence 776554
No 37
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=4.6e-20 Score=197.62 Aligned_cols=224 Identities=20% Similarity=0.184 Sum_probs=171.6
Q ss_pred ccCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccC
Q 003086 528 NLKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKK 607 (849)
Q Consensus 528 ~~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~ 607 (849)
..++++|.+.+.. +. .+|..+.++++|++|+|++|.+. .+|..++.+++|++|+|++| .+..+|..++.
T Consensus 80 ~~~l~~L~L~~n~-----l~-~lp~~l~~l~~L~~L~L~~n~l~----~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~ 148 (328)
T 4fcg_A 80 QPGRVALELRSVP-----LP-QFPDQAFRLSHLQHMTIDAAGLM----ELPDTMQQFAGLETLTLARN-PLRALPASIAS 148 (328)
T ss_dssp STTCCEEEEESSC-----CS-SCCSCGGGGTTCSEEEEESSCCC----CCCSCGGGGTTCSEEEEESC-CCCCCCGGGGG
T ss_pred ccceeEEEccCCC-----ch-hcChhhhhCCCCCEEECCCCCcc----chhHHHhccCCCCEEECCCC-ccccCcHHHhc
Confidence 3555555554432 22 56677888999999999999987 68999999999999999999 77899999999
Q ss_pred CCCCcEEeeccccCCccCChhhhc---------ccCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCc
Q 003086 608 LKNLQILDVSYCQNLKMLPSYVQS---------FIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRI 678 (849)
Q Consensus 608 L~~L~~L~L~~~~~~~~lp~~i~~---------l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~ 678 (849)
+++|++|++++|+....+|..+.. +++|++|++++|.+. .+|..++.+++|+.|++..+.. . ..+
T Consensus 149 l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l----~-~l~ 222 (328)
T 4fcg_A 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL----S-ALG 222 (328)
T ss_dssp CTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCC----C-CCC
T ss_pred CcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCC----C-cCc
Confidence 999999999999999999987765 999999999999887 7888888899999988766632 2 234
Q ss_pred hhhhccccccceeeeeccCcccchHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEecc-CCCCCCCcCC
Q 003086 679 SELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFY-PGKTSPVWLN 757 (849)
Q Consensus 679 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~-~~~~~p~~~~ 757 (849)
..+..+++|+.|++++|.+....+..+..+++|+.|+|++|.+.+. ....+..+++|+.|+++++ ....+|.++
T Consensus 223 ~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~----~p~~~~~l~~L~~L~L~~n~~~~~iP~~l- 297 (328)
T 4fcg_A 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT----LPLDIHRLTQLEKLDLRGCVNLSRLPSLI- 297 (328)
T ss_dssp GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCB----CCTTGGGCTTCCEEECTTCTTCCCCCGGG-
T ss_pred hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhh----cchhhhcCCCCCEEeCCCCCchhhccHHH-
Confidence 4688888888888888876666666778888888888887755442 1123445677777777763 233446666
Q ss_pred CCCCCCCceEEEeeCCc
Q 003086 758 PASLPMLRYLSVCSGNL 774 (849)
Q Consensus 758 ~~~l~~L~~L~L~~n~l 774 (849)
+.+++|+.+.+..+.+
T Consensus 298 -~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 298 -AQLPANCIILVPPHLQ 313 (328)
T ss_dssp -GGSCTTCEEECCGGGS
T ss_pred -hhccCceEEeCCHHHH
Confidence 6777777777765433
No 38
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.81 E-value=1.3e-19 Score=212.24 Aligned_cols=160 Identities=22% Similarity=0.181 Sum_probs=71.2
Q ss_pred hhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCccc-CccccCCCCCcEEeeccccCCccCCh-hh
Q 003086 552 TKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHL-PPSLKKLKNLQILDVSYCQNLKMLPS-YV 629 (849)
Q Consensus 552 ~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~-~i 629 (849)
..|.++++|++|++++|.+. .+|..++.+++|++|++++| .+..+ |..+..+++|++|++++|.....+|. .+
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~----~lp~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLS----ELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCS----CCCSSCCSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred HHhccccCCCEEeccCCccC----CCChhhcccccCCEEECccC-CcCcCchhhhhccCcCCEEECCCCCcccccchhhh
Confidence 33455555555555555543 34455555555555555555 33322 33445555555555554443333332 24
Q ss_pred hcccCCcEeeccCCCCcccc--CccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccch-Hhhc
Q 003086 630 QSFIQLRALDVTHCGSLQYL--PKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEE-DALV 706 (849)
Q Consensus 630 ~~l~~L~~L~l~~~~~~~~~--p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~ 706 (849)
.++++|++|++++|.+.... |..++.+++|+.|++..+. .....+..+..+++|+.|++++|.+....+ ..+.
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 422 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE----PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ 422 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS----CEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTT
T ss_pred hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc----CCcCCHHHhcCCccCCeEECCCCcCCCcccchhhh
Confidence 44555555555555444322 3344455555555433331 111222334444444444444443332221 2244
Q ss_pred CCCCCCeEEEEeec
Q 003086 707 NLRELQFLSISCFD 720 (849)
Q Consensus 707 ~~~~L~~L~L~~~~ 720 (849)
.+++|+.|++++|.
T Consensus 423 ~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 423 NLHLLKVLNLSHSL 436 (606)
T ss_dssp TCTTCCEEECTTCC
T ss_pred CcccCCEEECCCCc
Confidence 44444444444443
No 39
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.80 E-value=4.9e-19 Score=199.96 Aligned_cols=120 Identities=15% Similarity=0.199 Sum_probs=91.2
Q ss_pred hccCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCcccc
Q 003086 527 SNLKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLK 606 (849)
Q Consensus 527 ~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~ 606 (849)
...+++++.+.+.... .++ .+..+++|++|+|++|.+. .+|. ++.+++|++|++++| .+..+|. ++
T Consensus 44 ~l~~l~~L~l~~~~i~------~l~-~~~~l~~L~~L~Ls~n~l~----~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~ 109 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK------SID-GVEYLNNLTQINFSNNQLT----DITP-LKNLTKLVDILMNNN-QIADITP-LA 109 (466)
T ss_dssp HHHTCCEEECCSSCCC------CCT-TGGGCTTCCEEECCSSCCC----CCGG-GTTCTTCCEEECCSS-CCCCCGG-GT
T ss_pred HhccccEEecCCCCCc------cCc-chhhhcCCCEEECCCCccC----Cchh-hhccccCCEEECCCC-ccccChh-hc
Confidence 3566777766554321 233 3788999999999999987 4555 999999999999999 7777776 99
Q ss_pred CCCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCccccccccccccCc
Q 003086 607 KLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLG 664 (849)
Q Consensus 607 ~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 664 (849)
++++|++|++++|. +..+|. +.++++|++|++++|.+. .++ .++.+++|+.|++
T Consensus 110 ~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~-~~~-~~~~l~~L~~L~l 163 (466)
T 1o6v_A 110 NLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLSF 163 (466)
T ss_dssp TCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEEEC-CCG-GGTTCTTCSEEEE
T ss_pred CCCCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCCccC-CCh-hhccCCcccEeec
Confidence 99999999999775 444554 889999999999998765 333 3555555555554
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.80 E-value=5.1e-19 Score=204.92 Aligned_cols=92 Identities=20% Similarity=0.095 Sum_probs=54.1
Q ss_pred hhhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCc-cCCh
Q 003086 549 NLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLK-MLPS 627 (849)
Q Consensus 549 ~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~-~lp~ 627 (849)
..+..|.++++|++|+|++|.+.+ ..|..|+.+++|++|+|++| .+..+|.. .+++|++|++++|.... ..|.
T Consensus 67 ~~~~~~~~l~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~ 140 (562)
T 3a79_B 67 LRMPDISFLSELRVLRLSHNRIRS---LDFHVFLFNQDLEYLDVSHN-RLQNISCC--PMASLRHLDLSFNDFDVLPVCK 140 (562)
T ss_dssp CCGGGTTTCTTCCEEECCSCCCCE---ECTTTTTTCTTCCEEECTTS-CCCEECSC--CCTTCSEEECCSSCCSBCCCCG
T ss_pred cChhhhccCCCccEEECCCCCCCc---CCHHHhCCCCCCCEEECCCC-cCCccCcc--ccccCCEEECCCCCccccCchH
Confidence 344556666666666666666652 33555666666666666666 55566654 56666666666555333 2345
Q ss_pred hhhcccCCcEeeccCCCCc
Q 003086 628 YVQSFIQLRALDVTHCGSL 646 (849)
Q Consensus 628 ~i~~l~~L~~L~l~~~~~~ 646 (849)
.++++++|++|++++|.+.
T Consensus 141 ~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 141 EFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp GGGGCTTCCEEEEECSBCC
T ss_pred hhcccCcccEEecCCCccc
Confidence 6666666666666665543
No 41
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.80 E-value=2.1e-19 Score=213.48 Aligned_cols=291 Identities=18% Similarity=0.100 Sum_probs=201.0
Q ss_pred cCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCc-cccC
Q 003086 529 LKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPP-SLKK 607 (849)
Q Consensus 529 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~-~i~~ 607 (849)
.++++|.+.+. .+....+..|.++++|++|+|++|.+.+ ..|..|+++++|++|+|++| .+..+|. .+++
T Consensus 25 ~~l~~L~Ls~n-----~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~ 95 (680)
T 1ziw_A 25 TNITVLNLTHN-----QLRRLPAANFTRYSQLTSLDVGFNTISK---LEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAF 95 (680)
T ss_dssp TTCSEEECCSS-----CCCCCCGGGGGGGTTCSEEECCSSCCCC---CCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred CCCcEEECCCC-----CCCCcCHHHHhCCCcCcEEECCCCccCc---cCHHHHhcccCcCEEECCCC-ccCccChhhhcc
Confidence 57777766554 3444556679999999999999999873 55778899999999999999 7888887 5999
Q ss_pred CCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhh--ccc
Q 003086 608 LKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELK--NLT 685 (849)
Q Consensus 608 L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~--~l~ 685 (849)
+++|++|++++|......|..++++++|++|++++|.+.+..|..++.+++|+.|++..+. .....+..+. .++
T Consensus 96 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~~~~~ 171 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK----IQALKSEELDIFANS 171 (680)
T ss_dssp CTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC----CCCBCHHHHGGGTTC
T ss_pred CCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc----ccccCHHHhhccccc
Confidence 9999999999887666566789999999999999999987778889999999999976653 2333444443 458
Q ss_pred cccceeeeeccCcccchHhhcCCC---------------------------CCCeEEEEeecCCCCchhhhccccCCCCC
Q 003086 686 RLRKLGLQLTCGDEIEEDALVNLR---------------------------ELQFLSISCFDSHGSDLVAKIDELYPPEQ 738 (849)
Q Consensus 686 ~L~~L~l~~~~~~~~~~~~l~~~~---------------------------~L~~L~L~~~~~~~~~~~~~l~~l~~~~~ 738 (849)
+|+.|++++|.+....+..+..++ +|+.|++++|.+.+.. ...+..+ ..++
T Consensus 172 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~-~~~~~~l-~~~~ 249 (680)
T 1ziw_A 172 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS-NTTFLGL-KWTN 249 (680)
T ss_dssp EESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEEC-TTTTGGG-GGSC
T ss_pred cccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccC-hhHhhcc-CcCC
Confidence 999999999987766665555544 4555555555433211 0111111 1245
Q ss_pred CCeEEEeccCCC-CCCCcCCCCCCCCCceEEEeeCCccccccccccCcccccccceeecccccccc-c---ccc----cc
Q 003086 739 LDELSLNFYPGK-TSPVWLNPASLPMLRYLSVCSGNLSKMHDSFWGENNTVWKIEALLFESLSDLG-I---EWT----RL 809 (849)
Q Consensus 739 L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~fp~~L~~L~l~~l~~L~-l---~~~----~~ 809 (849)
|+.|+++++... ..|.++ ..+++|++|++++|.+..+....+. +++ +|+.|.+.+...-. + ... ..
T Consensus 250 L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~--~l~-~L~~L~L~~~~~~~~~~~~~lp~i~~~~ 324 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSF--AWLPQLEYFFLEYNNIQHLFSHSLH--GLF-NVRYLNLKRSFTKQSISLASLPKIDDFS 324 (680)
T ss_dssp CCEEECTTSCCCEECTTTT--TTCTTCCEEECCSCCBSEECTTTTT--TCT-TCCEEECTTCBCCC------CCEECTTT
T ss_pred CCEEECCCCCcCccCcccc--cCcccccEeeCCCCccCccChhhhc--CCC-CccEEeccchhhhcccccccccccChhh
Confidence 888888876433 234555 7788999999988888776554443 355 78888776421110 0 000 01
Q ss_pred cccccccceeeec-------------ccccCcccCcCCccccc
Q 003086 810 QGVMPSLHIVNAS-------------WCPELDSFPIEDVGFRG 839 (849)
Q Consensus 810 ~~~~p~L~~L~i~-------------~c~~L~~l~l~~n~l~~ 839 (849)
-..+++|+.|+++ +|++|+.|.+++|.+++
T Consensus 325 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~ 367 (680)
T 1ziw_A 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 367 (680)
T ss_dssp TTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCC
T ss_pred cccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhh
Confidence 1235666666554 35677777777776554
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=5.6e-19 Score=205.72 Aligned_cols=289 Identities=14% Similarity=0.058 Sum_probs=204.7
Q ss_pred CcceeEeeccCcc----hHhhhhccCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccccCCC
Q 003086 509 LNCRHLGVTSDVE----SKQLISNLKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSL 584 (849)
Q Consensus 509 ~~~r~lsi~~~~~----~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l 584 (849)
.+.+.+.+..... ......+++|++|.+.+.. +....+..|..+++|++|+|++|.+.+ ..|..|+.+
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l 122 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-----IEEIDTYAFAYAHTIQKLYMGFNAIRY---LPPHVFQNV 122 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC-----CCEECTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC-----CCCCChHHhcCCCCCCEEECCCCcCCC---CCHHHHcCC
Confidence 3456666654332 2224567889998776643 334556689999999999999999873 445668999
Q ss_pred CccceEeccCCCCCcccCcc-ccCCCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCccccccccccccC
Q 003086 585 QHLSYLCLSNTHPLIHLPPS-LKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLL 663 (849)
Q Consensus 585 ~~Lr~L~L~~~~~~~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 663 (849)
++|++|+|++| .+..+|.. ++.+++|++|+|++|......|..++++++|++|++++|.+.+. + ++.+++|+.|+
T Consensus 123 ~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~ 198 (597)
T 3oja_B 123 PLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHAN 198 (597)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEE
T ss_pred CCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhh
Confidence 99999999999 78888876 58999999999998887777777899999999999999988743 2 44555565555
Q ss_pred cccccCCCCC----------CCCCch--hhhccccccceeeeeccCcccchHhhcCCCCCCeEEEEeecCCCCchhhhcc
Q 003086 664 GFRPARSSQP----------EGCRIS--ELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSISCFDSHGSDLVAKID 731 (849)
Q Consensus 664 ~~~~~~~~~~----------~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~ 731 (849)
+..+...... ....+. .-...++|+.|++++|.+... ..+..+++|+.|+|++|.+.+. ...
T Consensus 199 l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~----~~~ 272 (597)
T 3oja_B 199 VSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKI----MYH 272 (597)
T ss_dssp CCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEE----ESG
T ss_pred cccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCC----CHH
Confidence 4433211100 000000 011235788899998877654 5678889999999998876543 223
Q ss_pred ccCCCCCCCeEEEeccCCCCCCCcCCCCCCCCCceEEEeeCCccccccccccCcccccccceeecccccccccccccccc
Q 003086 732 ELYPPEQLDELSLNFYPGKTSPVWLNPASLPMLRYLSVCSGNLSKMHDSFWGENNTVWKIEALLFESLSDLGIEWTRLQG 811 (849)
Q Consensus 732 ~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~fp~~L~~L~l~~l~~L~l~~~~~~~ 811 (849)
.+..+++|+.|+++++....+|.++ ..+|+|+.|+|++|.+..++..+ ..+| +|+.|++.++. +. .. ..+
T Consensus 273 ~~~~l~~L~~L~Ls~N~l~~l~~~~--~~l~~L~~L~Ls~N~l~~i~~~~---~~l~-~L~~L~L~~N~-l~-~~--~~~ 342 (597)
T 3oja_B 273 PFVKMQRLERLYISNNRLVALNLYG--QPIPTLKVLDLSHNHLLHVERNQ---PQFD-RLENLYLDHNS-IV-TL--KLS 342 (597)
T ss_dssp GGTTCSSCCEEECTTSCCCEEECSS--SCCTTCCEEECCSSCCCCCGGGH---HHHT-TCSEEECCSSC-CC-CC--CCC
T ss_pred HhcCccCCCEEECCCCCCCCCCccc--ccCCCCcEEECCCCCCCccCccc---ccCC-CCCEEECCCCC-CC-Cc--Chh
Confidence 4567888999999887655555555 67889999999999888776543 2467 88888888765 33 22 245
Q ss_pred cccccceeeecccc
Q 003086 812 VMPSLHIVNASWCP 825 (849)
Q Consensus 812 ~~p~L~~L~i~~c~ 825 (849)
.+|+|+.|++++||
T Consensus 343 ~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 343 THHTLKNLTLSHND 356 (597)
T ss_dssp TTCCCSEEECCSSC
T ss_pred hcCCCCEEEeeCCC
Confidence 68889999988765
No 43
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.79 E-value=7.7e-19 Score=204.17 Aligned_cols=142 Identities=19% Similarity=0.184 Sum_probs=80.3
Q ss_pred CcceeEeeccCcc----hHhhhhccCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccccCCC
Q 003086 509 LNCRHLGVTSDVE----SKQLISNLKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSL 584 (849)
Q Consensus 509 ~~~r~lsi~~~~~----~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l 584 (849)
...+++.+..+.- ......++++++|.+.+.. +....+..|.++++|++|+|++|.+.. ..|..|+++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-----i~~i~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l 99 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-----IQTIEDGAYQSLSHLSTLILTGNPIQS---LALGAFSGL 99 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC-----CCEECTTTTTTCTTCCEEECTTCCCCE---ECTTTTTTC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCc-----CCccCcccccCchhCCEEeCcCCcCCc---cCHhhhcCc
Confidence 4455665553321 1223445566666554432 222334556666666666666666651 233556666
Q ss_pred CccceEeccCCCCCcccCc-cccCCCCCcEEeeccccCCc-cCChhhhcccCCcEeeccCCCCccccCccccccccc
Q 003086 585 QHLSYLCLSNTHPLIHLPP-SLKKLKNLQILDVSYCQNLK-MLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNL 659 (849)
Q Consensus 585 ~~Lr~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L 659 (849)
++|++|++++| .+..+|. .++.+++|++|++++|.... .+|..++++++|++|++++|.+....|..++.+++|
T Consensus 100 ~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 100 SSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp TTCCEEECTTS-CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred ccccccccccc-ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 66666666666 5555554 46666666666666555443 356666666666666666666654445556666655
No 44
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.79 E-value=9.2e-19 Score=202.75 Aligned_cols=133 Identities=17% Similarity=0.101 Sum_probs=100.4
Q ss_pred CCcceeEeeccCcc----hHhhhhccCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccccCC
Q 003086 508 GLNCRHLGVTSDVE----SKQLISNLKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGS 583 (849)
Q Consensus 508 ~~~~r~lsi~~~~~----~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~ 583 (849)
+.+.+++.+..+.- ......+++|++|.+.+. .+....|..|.++++|++|+|++|.+. .+|.. .
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-----~l~~~~~~~~~~l~~L~~L~Ls~N~l~----~lp~~--~ 119 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-----RIRSLDFHVFLFNQDLEYLDVSHNRLQ----NISCC--P 119 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-----CCCEECTTTTTTCTTCCEEECTTSCCC----EECSC--C
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-----CCCcCCHHHhCCCCCCCEEECCCCcCC----ccCcc--c
Confidence 35677887765432 234567788888877664 344456788999999999999999987 67766 8
Q ss_pred CCccceEeccCCCCCcccC--ccccCCCCCcEEeeccccCCccCChhhhcccCC--cEeeccCCCC--ccccCccccc
Q 003086 584 LQHLSYLCLSNTHPLIHLP--PSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQL--RALDVTHCGS--LQYLPKGFGK 655 (849)
Q Consensus 584 l~~Lr~L~L~~~~~~~~lp--~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L--~~L~l~~~~~--~~~~p~~i~~ 655 (849)
+++|++|+|++| .+..+| ..++++++|++|++++|.... ..+..+++| ++|++++|.+ .+..|..+..
T Consensus 120 l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~ 193 (562)
T 3a79_B 120 MASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGGETESLQI 193 (562)
T ss_dssp CTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEE
T ss_pred cccCCEEECCCC-CccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccccccccCcccccc
Confidence 999999999999 677654 789999999999999877544 345566666 9999999987 5455554444
No 45
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.78 E-value=2e-18 Score=200.71 Aligned_cols=176 Identities=24% Similarity=0.213 Sum_probs=105.8
Q ss_pred cCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccC-ccccC
Q 003086 529 LKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLP-PSLKK 607 (849)
Q Consensus 529 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp-~~i~~ 607 (849)
+.+++|.+.+. .+....+..|.++++|++|+|++|.+.. ..|..|+++++|++|+|++| .+..+| ..++.
T Consensus 28 ~~l~~L~Ls~n-----~l~~~~~~~~~~l~~L~~L~Ls~n~i~~---i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~ 98 (570)
T 2z63_A 28 FSTKNLDLSFN-----PLRHLGSYSFFSFPELQVLDLSRCEIQT---IEDGAYQSLSHLSTLILTGN-PIQSLALGAFSG 98 (570)
T ss_dssp SSCCEEECCSC-----CCCEECTTTTTTCSSCCEEECTTCCCCE---ECTTTTTTCTTCCEEECTTC-CCCEECTTTTTT
T ss_pred ccccEEEccCC-----ccCccChhHhhCCCCceEEECCCCcCCc---cCcccccCchhCCEEeCcCC-cCCccCHhhhcC
Confidence 34566555443 2333445567778888888888877762 33456777888888888877 555554 56777
Q ss_pred CCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCcc-ccCccccccccccccCcccccCCCCCCCCCchhhhcccc
Q 003086 608 LKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQ-YLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTR 686 (849)
Q Consensus 608 L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~ 686 (849)
+++|++|++++|......+..++++++|++|++++|.+.. .+|..++++++|++|++..+. .....+..++.+++
T Consensus 99 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~----l~~~~~~~~~~l~~ 174 (570)
T 2z63_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK----IQSIYCTDLRVLHQ 174 (570)
T ss_dssp CTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC----CCEECGGGGHHHHT
T ss_pred ccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc----cceecHHHccchhc
Confidence 8888888887665433333357778888888888777664 357777778888887765442 22223344555555
Q ss_pred c----cceeeeeccCcccchHhhcCCCCCCeEEEEe
Q 003086 687 L----RKLGLQLTCGDEIEEDALVNLRELQFLSISC 718 (849)
Q Consensus 687 L----~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~ 718 (849)
| ..|++++|.+....+..+... +|+.|++++
T Consensus 175 L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~ 209 (570)
T 2z63_A 175 MPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRN 209 (570)
T ss_dssp CTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEES
T ss_pred cchhhhhcccCCCCceecCHHHhccC-cceeEeccc
Confidence 5 455555555444433333322 344444443
No 46
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.77 E-value=6.3e-18 Score=189.33 Aligned_cols=181 Identities=18% Similarity=0.139 Sum_probs=94.1
Q ss_pred cceeEeeccCcc--hHhhhhccCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccccCCCCcc
Q 003086 510 NCRHLGVTSDVE--SKQLISNLKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHL 587 (849)
Q Consensus 510 ~~r~lsi~~~~~--~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~L 587 (849)
+.+++.+....- .+....+++++.|.+.+.. +.. ++ |..+++|++|+|++|.+. .++ ++.+++|
T Consensus 43 ~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~-----l~~-~~--~~~l~~L~~L~Ls~N~l~----~~~--~~~l~~L 108 (457)
T 3bz5_A 43 TLTSLDCHNSSITDMTGIEKLTGLTKLICTSNN-----ITT-LD--LSQNTNLTYLACDSNKLT----NLD--VTPLTKL 108 (457)
T ss_dssp TCCEEECCSSCCCCCTTGGGCTTCSEEECCSSC-----CSC-CC--CTTCTTCSEEECCSSCCS----CCC--CTTCTTC
T ss_pred CCCEEEccCCCcccChhhcccCCCCEEEccCCc-----CCe-Ec--cccCCCCCEEECcCCCCc----eee--cCCCCcC
Confidence 345555443221 2234455666666555432 211 22 666777777777777765 232 6667777
Q ss_pred ceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCccccccccccccCcccc
Q 003086 588 SYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRP 667 (849)
Q Consensus 588 r~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~ 667 (849)
++|+|++| .+..+| ++.+++|++|++++|.... +| ++++++|++|++++|...+.+ .++.+++|+.|++..+
T Consensus 109 ~~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 109 TYLNCDTN-KLTKLD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN 180 (457)
T ss_dssp CEEECCSS-CCSCCC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS
T ss_pred CEEECCCC-cCCeec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC
Confidence 77777776 555554 6666677777776554333 32 555666666666666433333 3455555555554443
Q ss_pred cCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCeEEEEeecCC
Q 003086 668 ARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSISCFDSH 722 (849)
Q Consensus 668 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 722 (849)
.. ... .+..+++|+.|++++|.++.. .+..+++|+.|++++|.++
T Consensus 181 ~l----~~l---~l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~ 225 (457)
T 3bz5_A 181 KI----TEL---DVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLT 225 (457)
T ss_dssp CC----CCC---CCTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCS
T ss_pred cc----cee---ccccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccc
Confidence 21 111 144445555555555544333 1444445555555544433
No 47
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.77 E-value=4.1e-19 Score=192.92 Aligned_cols=217 Identities=18% Similarity=0.115 Sum_probs=105.4
Q ss_pred hhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCcc-ccCCCCCcEEeeccccCCccCCh--h
Q 003086 552 TKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPS-LKKLKNLQILDVSYCQNLKMLPS--Y 628 (849)
Q Consensus 552 ~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~--~ 628 (849)
..|.++++|++|+|++|.+.. ..|..|+++++|++|+|++| .+..+|.. ++.+++|++|++++|... .+|. .
T Consensus 70 ~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~ 144 (353)
T 2z80_A 70 SDLQRCVNLQALVLTSNGINT---IEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSL 144 (353)
T ss_dssp TTTTTCTTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCS
T ss_pred HHhccCCCCCEEECCCCccCc---cCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhh
Confidence 345556666666666665541 23344556666666666665 45555544 555666666666644322 3433 4
Q ss_pred hhcccCCcEeeccCCC-CccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcC
Q 003086 629 VQSFIQLRALDVTHCG-SLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVN 707 (849)
Q Consensus 629 i~~l~~L~~L~l~~~~-~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 707 (849)
+.++++|++|++++|. +....+..++.+++|+.|++..+. .....+..+..+++|+.|++++|.+.......+..
T Consensus 145 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 220 (353)
T 2z80_A 145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD----LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV 220 (353)
T ss_dssp CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT----CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHH
T ss_pred hccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC----cCccCHHHHhccccCCeecCCCCccccchhhhhhh
Confidence 5556666666666553 332333445556666666544432 12223344555566666666665544443344444
Q ss_pred CCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCC-----CCCCcCCCCCCCCCceEEEeeCCccccccc
Q 003086 708 LRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGK-----TSPVWLNPASLPMLRYLSVCSGNLSKMHDS 780 (849)
Q Consensus 708 ~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-----~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~ 780 (849)
+++|+.|++++|.+.+... ..+......+.++.+.+.+.... ..|.++ ..+++|++|+|++|+++.++..
T Consensus 221 ~~~L~~L~L~~n~l~~~~~-~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l--~~l~~L~~L~Ls~N~l~~i~~~ 295 (353)
T 2z80_A 221 TSSVECLELRDTDLDTFHF-SELSTGETNSLIKKFTFRNVKITDESLFQVMKLL--NQISGLLELEFSRNQLKSVPDG 295 (353)
T ss_dssp TTTEEEEEEESCBCTTCCC-C------CCCCCCEEEEESCBCCHHHHHHHHHHH--HTCTTCCEEECCSSCCCCCCTT
T ss_pred cccccEEECCCCccccccc-cccccccccchhhccccccccccCcchhhhHHHH--hcccCCCEEECCCCCCCccCHH
Confidence 5566666666555443211 11112222334444444432211 012233 4455566666665555554443
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.77 E-value=5.3e-18 Score=182.30 Aligned_cols=221 Identities=20% Similarity=0.161 Sum_probs=162.2
Q ss_pred CcceEEecCCccccccccccccccCCCCccceEeccCCCCCccc-CccccCCCCCcEEeeccccCCccCChhhhcccCCc
Q 003086 558 RYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHL-PPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLR 636 (849)
Q Consensus 558 ~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 636 (849)
+.|++|+|++|.+.. ..+..|+.+++|++|+|++| .+..+ |..++.+++|++|++++|. +..+|..+. ++|+
T Consensus 52 ~~l~~L~L~~n~i~~---~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~ 124 (330)
T 1xku_A 52 PDTALLDLQNNKITE---IKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP--KTLQ 124 (330)
T ss_dssp TTCCEEECCSSCCCC---BCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC--TTCC
T ss_pred CCCeEEECCCCcCCE---eChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhc--cccc
Confidence 678999999998872 33347889999999999998 56555 7788999999999999765 446776554 7899
Q ss_pred EeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCeEEE
Q 003086 637 ALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSI 716 (849)
Q Consensus 637 ~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L 716 (849)
+|++++|.+....+..++.+++|+.|++..+.... .+..+..+..+++|+.|++++|.+..+.... .++|+.|++
T Consensus 125 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~---~~~L~~L~l 199 (330)
T 1xku_A 125 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS--SGIENGAFQGMKKLSYIRIADTNITTIPQGL---PPSLTELHL 199 (330)
T ss_dssp EEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG--GGBCTTGGGGCTTCCEEECCSSCCCSCCSSC---CTTCSEEEC
T ss_pred EEECCCCcccccCHhHhcCCccccEEECCCCcCCc--cCcChhhccCCCCcCEEECCCCccccCCccc---cccCCEEEC
Confidence 99999998875555668889999999876653211 1234556888999999999998776554321 278999999
Q ss_pred EeecCCCCchhhhccccCCCCCCCeEEEeccCCCC-CCCcCCCCCCCCCceEEEeeCCccccccccccCcccccccceee
Q 003086 717 SCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKT-SPVWLNPASLPMLRYLSVCSGNLSKMHDSFWGENNTVWKIEALL 795 (849)
Q Consensus 717 ~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~fp~~L~~L~ 795 (849)
++|.+... ....+..+++|+.|+++++.... .+.++ ..+++|++|+|++|.+..++..+. .++ +|++|.
T Consensus 200 ~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~lp~~l~---~l~-~L~~L~ 269 (330)
T 1xku_A 200 DGNKITKV----DAASLKGLNNLAKLGLSFNSISAVDNGSL--ANTPHLRELHLNNNKLVKVPGGLA---DHK-YIQVVY 269 (330)
T ss_dssp TTSCCCEE----CTGGGTTCTTCCEEECCSSCCCEECTTTG--GGSTTCCEEECCSSCCSSCCTTTT---TCS-SCCEEE
T ss_pred CCCcCCcc----CHHHhcCCCCCCEEECCCCcCceeChhhc--cCCCCCCEEECCCCcCccCChhhc---cCC-CcCEEE
Confidence 88876543 22345677889999998765432 23355 778999999999999887765432 345 888888
Q ss_pred ccccc
Q 003086 796 FESLS 800 (849)
Q Consensus 796 l~~l~ 800 (849)
+.+..
T Consensus 270 l~~N~ 274 (330)
T 1xku_A 270 LHNNN 274 (330)
T ss_dssp CCSSC
T ss_pred CCCCc
Confidence 87643
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.76 E-value=3.3e-18 Score=184.04 Aligned_cols=220 Identities=19% Similarity=0.182 Sum_probs=166.8
Q ss_pred CcceEEecCCccccccccccccccCCCCccceEeccCCCCCccc-CccccCCCCCcEEeeccccCCccCChhhhcccCCc
Q 003086 558 RYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHL-PPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLR 636 (849)
Q Consensus 558 ~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 636 (849)
+.|++|+|++|.+.. ..|..|+++++|++|+|++| .+..+ |..++.+++|++|++++|. +..+|..+. ++|+
T Consensus 54 ~~l~~L~l~~n~i~~---~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~ 126 (332)
T 2ft3_A 54 PDTTLLDLQNNDISE---LRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLP--SSLV 126 (332)
T ss_dssp TTCCEEECCSSCCCE---ECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCC--TTCC
T ss_pred CCCeEEECCCCcCCc---cCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCCc-CCccCcccc--ccCC
Confidence 689999999999872 34568999999999999999 56655 7789999999999999765 447777665 8999
Q ss_pred EeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCeEEE
Q 003086 637 ALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSI 716 (849)
Q Consensus 637 ~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L 716 (849)
+|++++|.+....+..++.+++|+.|++..+.... .+..+..+..+ +|+.|++++|.+..++.. + .++|+.|++
T Consensus 127 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~-~--~~~L~~L~l 200 (332)
T 2ft3_A 127 ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN--SGFEPGAFDGL-KLNYLRISEAKLTGIPKD-L--PETLNELHL 200 (332)
T ss_dssp EEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG--GGSCTTSSCSC-CCSCCBCCSSBCSSCCSS-S--CSSCSCCBC
T ss_pred EEECCCCccCccCHhHhCCCccCCEEECCCCcccc--CCCCcccccCC-ccCEEECcCCCCCccCcc-c--cCCCCEEEC
Confidence 99999999885445568999999999977663221 12334456666 899999999987765432 2 278999999
Q ss_pred EeecCCCCchhhhccccCCCCCCCeEEEeccCCCC-CCCcCCCCCCCCCceEEEeeCCccccccccccCcccccccceee
Q 003086 717 SCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKT-SPVWLNPASLPMLRYLSVCSGNLSKMHDSFWGENNTVWKIEALL 795 (849)
Q Consensus 717 ~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~fp~~L~~L~ 795 (849)
++|.+... ....+..+++|+.|+++++.... .+.++ ..+++|++|+|++|.+..++..+. .++ +|+.|.
T Consensus 201 ~~n~i~~~----~~~~l~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~lp~~l~---~l~-~L~~L~ 270 (332)
T 2ft3_A 201 DHNKIQAI----ELEDLLRYSKLYRLGLGHNQIRMIENGSL--SFLPTLRELHLDNNKLSRVPAGLP---DLK-LLQVVY 270 (332)
T ss_dssp CSSCCCCC----CTTSSTTCTTCSCCBCCSSCCCCCCTTGG--GGCTTCCEEECCSSCCCBCCTTGG---GCT-TCCEEE
T ss_pred CCCcCCcc----CHHHhcCCCCCCEEECCCCcCCcCChhHh--hCCCCCCEEECCCCcCeecChhhh---cCc-cCCEEE
Confidence 99877654 22356678899999998765443 34455 789999999999999997766532 356 888888
Q ss_pred ccccc
Q 003086 796 FESLS 800 (849)
Q Consensus 796 l~~l~ 800 (849)
+.+..
T Consensus 271 l~~N~ 275 (332)
T 2ft3_A 271 LHTNN 275 (332)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 88643
No 50
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=1e-18 Score=186.45 Aligned_cols=259 Identities=14% Similarity=0.033 Sum_probs=168.7
Q ss_pred hhhhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCCh
Q 003086 548 SNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPS 627 (849)
Q Consensus 548 ~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~ 627 (849)
..+...+..+++|++|+|++|.+.. ..|..|+.+++|++|+|++| .+...+. +..+++|++|++++|.. ..+|
T Consensus 24 ~~~~~~~~~~~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~n~l-~~l~- 96 (317)
T 3o53_A 24 QALASLRQSAWNVKELDLSGNPLSQ---ISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYV-QELL- 96 (317)
T ss_dssp HHHHHHHTTGGGCSEEECTTSCCCC---CCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCSSEE-EEEE-
T ss_pred hhHHHHhccCCCCCEEECcCCccCc---CCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcCCcc-cccc-
Confidence 3444556677788888888888762 34467788888888888888 6665554 77888888888886653 3333
Q ss_pred hhhcccCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhh-c
Q 003086 628 YVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDAL-V 706 (849)
Q Consensus 628 ~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l-~ 706 (849)
..++|++|++++|.+....+. .+++|++|++..+. ........+..+++|+.|++++|.+....+..+ .
T Consensus 97 ---~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~----l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 166 (317)
T 3o53_A 97 ---VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNK----ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166 (317)
T ss_dssp ---ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSC----CCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGG
T ss_pred ---CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCC----CCCccchhhhccCCCCEEECCCCCCCcccHHHHhh
Confidence 347888888888877643332 35677777765542 233333456777888888888887776655544 4
Q ss_pred CCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCCCcCCCCCCCCCceEEEeeCCccccccccccCcc
Q 003086 707 NLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSPVWLNPASLPMLRYLSVCSGNLSKMHDSFWGENN 786 (849)
Q Consensus 707 ~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 786 (849)
.+++|+.|+|++|.++.. .....+++|+.|+++++.....|..+ ..+++|+.|+|++|.+..++..+. .
T Consensus 167 ~l~~L~~L~L~~N~l~~~------~~~~~l~~L~~L~Ls~N~l~~l~~~~--~~l~~L~~L~L~~N~l~~l~~~~~---~ 235 (317)
T 3o53_A 167 SSDTLEHLNLQYNFIYDV------KGQVVFAKLKTLDLSSNKLAFMGPEF--QSAAGVTWISLRNNKLVLIEKALR---F 235 (317)
T ss_dssp GTTTCCEEECTTSCCCEE------ECCCCCTTCCEEECCSSCCCEECGGG--GGGTTCSEEECTTSCCCEECTTCC---C
T ss_pred ccCcCCEEECCCCcCccc------ccccccccCCEEECCCCcCCcchhhh--cccCcccEEECcCCcccchhhHhh---c
Confidence 678888888887765432 23334778888888876554444444 677888888888888877655431 3
Q ss_pred cccccceeecccccccccccccccccccccceeeecccccCcccCcCCc
Q 003086 787 TVWKIEALLFESLSDLGIEWTRLQGVMPSLHIVNASWCPELDSFPIEDV 835 (849)
Q Consensus 787 fp~~L~~L~l~~l~~L~l~~~~~~~~~p~L~~L~i~~c~~L~~l~l~~n 835 (849)
++ +|+.|.+.+.+.-.-........+|.|+.|++.+|+.++..+....
T Consensus 236 l~-~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~ 283 (317)
T 3o53_A 236 SQ-NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283 (317)
T ss_dssp CT-TCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCC
T ss_pred CC-CCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhcc
Confidence 45 7777777765433101222334577777777777766665554433
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.74 E-value=3e-18 Score=186.01 Aligned_cols=263 Identities=14% Similarity=0.079 Sum_probs=182.8
Q ss_pred hhhhhhcCCCcceEEecCCcccccccccccc-ccCCCCccceEeccCCCCCccc-CccccCCCCCcEEeeccccCCccCC
Q 003086 549 NLATKFSECRYLRVLDISRSIFELPLKGLLS-QTGSLQHLSYLCLSNTHPLIHL-PPSLKKLKNLQILDVSYCQNLKMLP 626 (849)
Q Consensus 549 ~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~-~~~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~~~~~lp 626 (849)
.+|..+. ++|++|+|++|.+. .+|. .+.++++|++|+|++| .+..+ |..++.+++|++|++++|... .+|
T Consensus 45 ~iP~~~~--~~L~~L~l~~n~i~----~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~ 116 (353)
T 2z80_A 45 SIPSGLT--EAVKSLDLSNNRIT----YISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLS-NLS 116 (353)
T ss_dssp SCCTTCC--TTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCS-SCC
T ss_pred ccccccc--ccCcEEECCCCcCc----ccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCC-cCC
Confidence 4454443 58999999999987 4444 7999999999999999 66666 567999999999999977655 555
Q ss_pred hh-hhcccCCcEeeccCCCCccccCc--cccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchH
Q 003086 627 SY-VQSFIQLRALDVTHCGSLQYLPK--GFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEED 703 (849)
Q Consensus 627 ~~-i~~l~~L~~L~l~~~~~~~~~p~--~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 703 (849)
.. +.++++|++|++++|.+. .+|. .++.+++|+.|++..+. ......+..+..+++|+.|++++|.+....+.
T Consensus 117 ~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~---~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 117 SSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMD---TFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192 (353)
T ss_dssp HHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESS---SCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred HhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCc---cccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence 54 889999999999999987 5655 68899999999977652 11233345688899999999999988887778
Q ss_pred hhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCC-CcC-CCCCCCCCceEEEeeCCcccccccc
Q 003086 704 ALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSP-VWL-NPASLPMLRYLSVCSGNLSKMHDSF 781 (849)
Q Consensus 704 ~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p-~~~-~~~~l~~L~~L~L~~n~l~~~~~~~ 781 (849)
.+..+++|++|++++|.+... ... .+..+++|+.|+++++.....+ ..+ .....+.++.++|..+.+.+.....
T Consensus 193 ~l~~l~~L~~L~l~~n~l~~~--~~~--~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 193 SLKSIQNVSHLILHMKQHILL--LEI--FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp TTTTCSEEEEEEEECSCSTTH--HHH--HHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred HHhccccCCeecCCCCccccc--hhh--hhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhh
Confidence 899999999999999876432 111 1223678999999876433221 111 1145677889999887776422111
Q ss_pred ccC--cccccccceeecccccccccccccccccccccceeeecccccCcccCcCCcccccc
Q 003086 782 WGE--NNTVWKIEALLFESLSDLGIEWTRLQGVMPSLHIVNASWCPELDSFPIEDVGFRGG 840 (849)
Q Consensus 782 ~~~--~~fp~~L~~L~l~~l~~L~l~~~~~~~~~p~L~~L~i~~c~~L~~l~l~~n~l~~~ 840 (849)
... ..++ +|+.|++.+.. +. ..... .+.++++|+.|.+++|.+++.
T Consensus 269 l~~~l~~l~-~L~~L~Ls~N~-l~-~i~~~----------~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 269 VMKLLNQIS-GLLELEFSRNQ-LK-SVPDG----------IFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp HHHHHHTCT-TCCEEECCSSC-CC-CCCTT----------TTTTCTTCCEEECCSSCBCCC
T ss_pred hHHHHhccc-CCCEEECCCCC-CC-ccCHH----------HHhcCCCCCEEEeeCCCccCc
Confidence 100 1355 77777777542 33 22111 124456666666666666653
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=9.1e-18 Score=188.74 Aligned_cols=226 Identities=20% Similarity=0.148 Sum_probs=173.2
Q ss_pred cCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCcc-ccC
Q 003086 529 LKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPS-LKK 607 (849)
Q Consensus 529 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~-i~~ 607 (849)
++++.|.+.+. .+....+..|.++++|++|+|++|.+.. ..|..|.++++|++|+|++| .+..+|.. +..
T Consensus 75 ~~l~~L~L~~n-----~i~~~~~~~~~~l~~L~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~ 145 (452)
T 3zyi_A 75 SNTRYLNLMEN-----NIQMIQADTFRHLHHLEVLQLGRNSIRQ---IEVGAFNGLASLNTLELFDN-WLTVIPSGAFEY 145 (452)
T ss_dssp TTCSEEECCSS-----CCCEECTTTTTTCTTCCEEECCSSCCCE---ECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSS
T ss_pred CCccEEECcCC-----cCceECHHHcCCCCCCCEEECCCCccCC---cChhhccCcccCCEEECCCC-cCCccChhhhcc
Confidence 46666655543 3444567788999999999999999872 45578889999999999999 67777754 788
Q ss_pred CCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCc-cccccccccccCcccccCCCCCCCCCchhhhcccc
Q 003086 608 LKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPK-GFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTR 686 (849)
Q Consensus 608 L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~ 686 (849)
+++|++|+|++|......+..+.++++|+.|++++|...+.++. .+..+++|+.|++..+.... ...+..+++
T Consensus 146 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~l~~ 219 (452)
T 3zyi_A 146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD------MPNLTPLVG 219 (452)
T ss_dssp CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS------CCCCTTCTT
T ss_pred cCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc------ccccccccc
Confidence 99999999998776655556788999999999998665555655 48889999999877664321 235778899
Q ss_pred ccceeeeeccCcccchHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCC-CcCCCCCCCCCc
Q 003086 687 LRKLGLQLTCGDEIEEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSP-VWLNPASLPMLR 765 (849)
Q Consensus 687 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~ 765 (849)
|+.|++++|.+....+..+..+++|+.|+|++|.+... ....+..+++|+.|+++++.....| ..+ ..+++|+
T Consensus 220 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~ 293 (452)
T 3zyi_A 220 LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI----ERNAFDGLASLVELNLAHNNLSSLPHDLF--TPLRYLV 293 (452)
T ss_dssp CCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEE----CTTTTTTCTTCCEEECCSSCCSCCCTTSS--TTCTTCC
T ss_pred ccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceE----CHHHhcCCCCCCEEECCCCcCCccChHHh--ccccCCC
Confidence 99999999988888888899999999999998876543 2234566789999999876544433 444 6789999
Q ss_pred eEEEeeCCcc
Q 003086 766 YLSVCSGNLS 775 (849)
Q Consensus 766 ~L~L~~n~l~ 775 (849)
.|+|++|.+.
T Consensus 294 ~L~L~~Np~~ 303 (452)
T 3zyi_A 294 ELHLHHNPWN 303 (452)
T ss_dssp EEECCSSCEE
T ss_pred EEEccCCCcC
Confidence 9999988764
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=1e-17 Score=188.22 Aligned_cols=225 Identities=16% Similarity=0.086 Sum_probs=179.4
Q ss_pred CcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccC-ccccCCCCCcEEeeccccCCccCChhhhcccCCc
Q 003086 558 RYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLP-PSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLR 636 (849)
Q Consensus 558 ~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 636 (849)
++|++|+|++|.+.. ..|..|+++++|++|+|++| .+..++ ..+.++++|++|+|++|......+..+.++++|+
T Consensus 75 ~~l~~L~L~~n~i~~---~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 150 (452)
T 3zyi_A 75 SNTRYLNLMENNIQM---IQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLR 150 (452)
T ss_dssp TTCSEEECCSSCCCE---ECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCC
T ss_pred CCccEEECcCCcCce---ECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCC
Confidence 689999999999973 45788999999999999999 666655 6789999999999998876655556688999999
Q ss_pred EeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCeEEE
Q 003086 637 ALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSI 716 (849)
Q Consensus 637 ~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L 716 (849)
+|++++|.+....+..+..+++|+.|++..+. .........+..+++|+.|++++|.+.... .+..+++|+.|+|
T Consensus 151 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~---~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~L 225 (452)
T 3zyi_A 151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGELK---KLEYISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEELEM 225 (452)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCT---TCCEECTTTTTTCTTCCEEECTTSCCSSCC--CCTTCTTCCEEEC
T ss_pred EEECCCCCcceeCHhHHhcCCcccEEeCCCCC---CccccChhhccCCCCCCEEECCCCcccccc--cccccccccEEEC
Confidence 99999999885555678999999999976642 122223345888999999999999887663 4788999999999
Q ss_pred EeecCCCCchhhhccccCCCCCCCeEEEeccCCCC-CCCcCCCCCCCCCceEEEeeCCccccccccccCcccccccceee
Q 003086 717 SCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKT-SPVWLNPASLPMLRYLSVCSGNLSKMHDSFWGENNTVWKIEALL 795 (849)
Q Consensus 717 ~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~fp~~L~~L~ 795 (849)
++|.+.+. ....+..+++|+.|+++++.... .|..+ ..+++|+.|+|++|+++.++...+.. ++ +|+.|.
T Consensus 226 s~N~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~--l~-~L~~L~ 296 (452)
T 3zyi_A 226 SGNHFPEI----RPGSFHGLSSLKKLWVMNSQVSLIERNAF--DGLASLVELNLAHNNLSSLPHDLFTP--LR-YLVELH 296 (452)
T ss_dssp TTSCCSEE----CGGGGTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCSCCCTTSSTT--CT-TCCEEE
T ss_pred cCCcCccc----CcccccCccCCCEEEeCCCcCceECHHHh--cCCCCCCEEECCCCcCCccChHHhcc--cc-CCCEEE
Confidence 99977653 22456678899999998765432 35555 78999999999999999887766543 56 888988
Q ss_pred ccccc
Q 003086 796 FESLS 800 (849)
Q Consensus 796 l~~l~ 800 (849)
+.+.+
T Consensus 297 L~~Np 301 (452)
T 3zyi_A 297 LHHNP 301 (452)
T ss_dssp CCSSC
T ss_pred ccCCC
Confidence 87643
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=185.99 Aligned_cols=226 Identities=20% Similarity=0.169 Sum_probs=171.3
Q ss_pred cCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCc-cccC
Q 003086 529 LKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPP-SLKK 607 (849)
Q Consensus 529 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~-~i~~ 607 (849)
.+++.|.+.++ .+....+..|.++++|++|+|++|.+.. ..+..|.++++|++|+|++| .+..+|. .+..
T Consensus 64 ~~l~~L~L~~n-----~i~~~~~~~~~~l~~L~~L~Ls~n~i~~---i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~ 134 (440)
T 3zyj_A 64 TNTRLLNLHEN-----QIQIIKVNSFKHLRHLEILQLSRNHIRT---IEIGAFNGLANLNTLELFDN-RLTTIPNGAFVY 134 (440)
T ss_dssp TTCSEEECCSC-----CCCEECTTTTSSCSSCCEEECCSSCCCE---ECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCS
T ss_pred CCCcEEEccCC-----cCCeeCHHHhhCCCCCCEEECCCCcCCc---cChhhccCCccCCEEECCCC-cCCeeCHhHhhc
Confidence 45566555443 3333556778999999999999998872 44577889999999999999 7777775 5888
Q ss_pred CCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCc-cccccccccccCcccccCCCCCCCCCchhhhcccc
Q 003086 608 LKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPK-GFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTR 686 (849)
Q Consensus 608 L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~ 686 (849)
+++|++|+|++|......+..+.++++|++|++++|.....++. .+..+++|+.|++..+... .+..+..+++
T Consensus 135 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~l~~ 208 (440)
T 3zyj_A 135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR------EIPNLTPLIK 208 (440)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS------SCCCCTTCSS
T ss_pred cccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc------cccccCCCcc
Confidence 99999999998776655556788999999999998665555554 5888999999987766332 1235778889
Q ss_pred ccceeeeeccCcccchHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCC-CcCCCCCCCCCc
Q 003086 687 LRKLGLQLTCGDEIEEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSP-VWLNPASLPMLR 765 (849)
Q Consensus 687 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~ 765 (849)
|+.|++++|.+....+..+..+++|+.|+|++|.+... ....+..+++|+.|+++++.....| ..+ ..+++|+
T Consensus 209 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~ 282 (440)
T 3zyj_A 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI----ERNAFDNLQSLVEINLAHNNLTLLPHDLF--TPLHHLE 282 (440)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE----CTTSSTTCTTCCEEECTTSCCCCCCTTTT--SSCTTCC
T ss_pred cCEEECCCCccCccChhhhccCccCCEEECCCCceeEE----ChhhhcCCCCCCEEECCCCCCCccChhHh--ccccCCC
Confidence 99999999988888778888999999999998876543 2234567888999999876544433 444 6789999
Q ss_pred eEEEeeCCcc
Q 003086 766 YLSVCSGNLS 775 (849)
Q Consensus 766 ~L~L~~n~l~ 775 (849)
.|+|++|.+.
T Consensus 283 ~L~L~~Np~~ 292 (440)
T 3zyj_A 283 RIHLHHNPWN 292 (440)
T ss_dssp EEECCSSCEE
T ss_pred EEEcCCCCcc
Confidence 9999988764
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.73 E-value=5.4e-18 Score=180.16 Aligned_cols=223 Identities=19% Similarity=0.115 Sum_probs=141.6
Q ss_pred CcceEEecCCccccccccccccc-cCCCCccceEeccCCCCCccc---CccccCCCCCcEEeeccccCCccCChhhhccc
Q 003086 558 RYLRVLDISRSIFELPLKGLLSQ-TGSLQHLSYLCLSNTHPLIHL---PPSLKKLKNLQILDVSYCQNLKMLPSYVQSFI 633 (849)
Q Consensus 558 ~~Lr~L~L~~~~~~~~~~~~p~~-~~~l~~Lr~L~L~~~~~~~~l---p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~ 633 (849)
++|++|+|++|.+. .+|.. |+++++|++|+|++| .+..+ |..+..+++|++|++++|. +..+|..+..++
T Consensus 28 ~~l~~L~L~~n~l~----~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~ 101 (306)
T 2z66_A 28 SSATRLELESNKLQ----SLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLE 101 (306)
T ss_dssp TTCCEEECCSSCCC----CCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCT
T ss_pred CCCCEEECCCCccC----ccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCCc-cccChhhcCCCC
Confidence 57888888888876 45543 678888888888888 55544 5566778888888888665 445677777888
Q ss_pred CCcEeeccCCCCccccC-ccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcc-cchHhhcCCCCC
Q 003086 634 QLRALDVTHCGSLQYLP-KGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDE-IEEDALVNLREL 711 (849)
Q Consensus 634 ~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~L 711 (849)
+|++|++++|.+....+ ..+..+++|+.|++..+.. ....+..+..+++|+.|++++|.+.. ..+..+..+++|
T Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 177 (306)
T 2z66_A 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT----RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177 (306)
T ss_dssp TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCC----EECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred CCCEEECCCCcccccccchhhhhccCCCEEECCCCcC----CccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC
Confidence 88888888887763333 3577777787777655422 22333456677777888877776544 344566777777
Q ss_pred CeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCC-CcCCCCCCCCCceEEEeeCCccccccccccCcccccc
Q 003086 712 QFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSP-VWLNPASLPMLRYLSVCSGNLSKMHDSFWGENNTVWK 790 (849)
Q Consensus 712 ~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~fp~~ 790 (849)
+.|++++|.++.. ....+..+++|+.|+++++.....+ ..+ ..+++|++|+|++|.+.......+.. +|.+
T Consensus 178 ~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~--~~~~ 249 (306)
T 2z66_A 178 TFLDLSQCQLEQL----SPTAFNSLSSLQVLNMSHNNFFSLDTFPY--KCLNSLQVLDYSLNHIMTSKKQELQH--FPSS 249 (306)
T ss_dssp CEEECTTSCCCEE----CTTTTTTCTTCCEEECTTSCCSBCCSGGG--TTCTTCCEEECTTSCCCBCSSSSCCC--CCTT
T ss_pred CEEECCCCCcCCc----CHHHhcCCCCCCEEECCCCccCccChhhc--cCcccCCEeECCCCCCcccCHHHHHh--hhcc
Confidence 7777777755432 1123445667777777665433222 233 56677777777777766554433322 2114
Q ss_pred cceeeccc
Q 003086 791 IEALLFES 798 (849)
Q Consensus 791 L~~L~l~~ 798 (849)
|+.|++.+
T Consensus 250 L~~L~L~~ 257 (306)
T 2z66_A 250 LAFLNLTQ 257 (306)
T ss_dssp CCEEECTT
T ss_pred CCEEEccC
Confidence 55555554
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=6.4e-18 Score=177.54 Aligned_cols=206 Identities=19% Similarity=0.153 Sum_probs=162.6
Q ss_pred CCcceEEecCCccccccccccccccCCCCccceEeccCCCCCccc-CccccCCCCCcEEeeccccCCccC-ChhhhcccC
Q 003086 557 CRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHL-PPSLKKLKNLQILDVSYCQNLKML-PSYVQSFIQ 634 (849)
Q Consensus 557 l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~~~~~l-p~~i~~l~~ 634 (849)
.+.|+.|+|++|.+.. ..+..|..+++|++|+|++| .+..+ |..+..+++|++|++++|..+..+ |..+..+++
T Consensus 31 ~~~l~~L~l~~n~i~~---~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~ 106 (285)
T 1ozn_A 31 PAASQRIFLHGNRISH---VPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106 (285)
T ss_dssp CTTCSEEECTTSCCCE---ECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTT
T ss_pred CCCceEEEeeCCcCCc---cCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcC
Confidence 4689999999999872 33457889999999999999 56655 778899999999999988744444 778889999
Q ss_pred CcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCeE
Q 003086 635 LRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFL 714 (849)
Q Consensus 635 L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 714 (849)
|++|++++|.+....|..++.+++|+.|++..+.. .......+..+++|+.|++++|.+....+..+..+++|+.|
T Consensus 107 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 182 (285)
T 1ozn_A 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL----QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182 (285)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC----CCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcc----cccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEE
Confidence 99999999998866677788999999998766532 33334457889999999999998887777778889999999
Q ss_pred EEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCC-CcCCCCCCCCCceEEEeeCCccc
Q 003086 715 SISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSP-VWLNPASLPMLRYLSVCSGNLSK 776 (849)
Q Consensus 715 ~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~L~~n~l~~ 776 (849)
++++|.+.+. ....+..+++|+.|+++++.....| .++ ..+++|++|++++|.+..
T Consensus 183 ~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 183 LLHQNRVAHV----HPHAFRDLGRLMTLYLFANNLSALPTEAL--APLRALQYLRLNDNPWVC 239 (285)
T ss_dssp ECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCSCCCHHHH--TTCTTCCEEECCSSCEEC
T ss_pred ECCCCccccc----CHhHccCcccccEeeCCCCcCCcCCHHHc--ccCcccCEEeccCCCccC
Confidence 9999876543 2234566889999999886544433 345 789999999999998764
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=2.5e-17 Score=172.97 Aligned_cols=183 Identities=20% Similarity=0.159 Sum_probs=77.6
Q ss_pred CccceEeccCCCCCcccC-ccccCCCCCcEEeeccccCCccCChhhhcccCCcEeeccCCC-CccccCcccccccccccc
Q 003086 585 QHLSYLCLSNTHPLIHLP-PSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCG-SLQYLPKGFGKLLNLEVL 662 (849)
Q Consensus 585 ~~Lr~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~-~~~~~p~~i~~l~~L~~L 662 (849)
++|++|+|++| .+..+| ..+..+++|++|++++|......|..+.++++|++|++++|. +....|..++.+++|++|
T Consensus 32 ~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp TTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 34455555554 333333 234444555555554443333334444445555555555443 332223444444555554
Q ss_pred CcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeE
Q 003086 663 LGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDEL 742 (849)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L 742 (849)
++..+.. ....+..+.++++|+.|++++|.+....+..+..+++|+.|+|++|.++.. ....+..+++|+.|
T Consensus 111 ~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L 182 (285)
T 1ozn_A 111 HLDRCGL----QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV----PERAFRGLHSLDRL 182 (285)
T ss_dssp ECTTSCC----CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEE
T ss_pred ECCCCcC----CEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc----CHHHhcCccccCEE
Confidence 4333321 122223344444555555555444444333444445555555544433321 00112334445555
Q ss_pred EEeccCCCC-CCCcCCCCCCCCCceEEEeeCCccccc
Q 003086 743 SLNFYPGKT-SPVWLNPASLPMLRYLSVCSGNLSKMH 778 (849)
Q Consensus 743 ~l~~~~~~~-~p~~~~~~~l~~L~~L~L~~n~l~~~~ 778 (849)
+++++.... .|.++ ..+++|+.|++++|.+..++
T Consensus 183 ~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~ 217 (285)
T 1ozn_A 183 LLHQNRVAHVHPHAF--RDLGRLMTLYLFANNLSALP 217 (285)
T ss_dssp ECCSSCCCEECTTTT--TTCTTCCEEECCSSCCSCCC
T ss_pred ECCCCcccccCHhHc--cCcccccEeeCCCCcCCcCC
Confidence 554432211 13333 44445555555554444433
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.72 E-value=5.8e-18 Score=179.90 Aligned_cols=232 Identities=20% Similarity=0.149 Sum_probs=180.4
Q ss_pred cCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCC
Q 003086 529 LKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKL 608 (849)
Q Consensus 529 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L 608 (849)
++++.|.+.+. .+....+..|.++++|++|+|++|.+.. +...|..+..+++|++|+|++| .+..+|..+..+
T Consensus 28 ~~l~~L~L~~n-----~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l 100 (306)
T 2z66_A 28 SSATRLELESN-----KLQSLPHGVFDKLTQLTKLSLSSNGLSF-KGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGL 100 (306)
T ss_dssp TTCCEEECCSS-----CCCCCCTTTTTTCTTCSEEECCSSCCCE-EEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETC
T ss_pred CCCCEEECCCC-----ccCccCHhHhhccccCCEEECCCCccCc-ccCcccccccccccCEEECCCC-ccccChhhcCCC
Confidence 46677766553 2332334568999999999999999862 1123566778999999999999 888999999999
Q ss_pred CCCcEEeeccccCCccCC-hhhhcccCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccc
Q 003086 609 KNLQILDVSYCQNLKMLP-SYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRL 687 (849)
Q Consensus 609 ~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L 687 (849)
++|++|++++|......+ ..+..+++|++|++++|.+....|..++.+++|++|++..+.... ...+..+..+++|
T Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~~l~~L 177 (306)
T 2z66_A 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE---NFLPDIFTELRNL 177 (306)
T ss_dssp TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG---GEECSCCTTCTTC
T ss_pred CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc---ccchhHHhhCcCC
Confidence 999999999876544433 578899999999999999887777889999999999977663211 1234568889999
Q ss_pred cceeeeeccCcccchHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCC-CCCcCCCCCCC-CCc
Q 003086 688 RKLGLQLTCGDEIEEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKT-SPVWLNPASLP-MLR 765 (849)
Q Consensus 688 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-~p~~~~~~~l~-~L~ 765 (849)
+.|++++|.+....+..+..+++|+.|+|++|.+.+.. ...+..+++|+.|+++++.... .|..+ ..+| +|+
T Consensus 178 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~~~~~L~ 251 (306)
T 2z66_A 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD----TFPYKCLNSLQVLDYSLNHIMTSKKQEL--QHFPSSLA 251 (306)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC----SGGGTTCTTCCEEECTTSCCCBCSSSSC--CCCCTTCC
T ss_pred CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC----hhhccCcccCCEeECCCCCCcccCHHHH--HhhhccCC
Confidence 99999999988887788999999999999999776532 1235678899999999875432 34455 6674 999
Q ss_pred eEEEeeCCccc
Q 003086 766 YLSVCSGNLSK 776 (849)
Q Consensus 766 ~L~L~~n~l~~ 776 (849)
+|+|++|.+..
T Consensus 252 ~L~L~~N~~~~ 262 (306)
T 2z66_A 252 FLNLTQNDFAC 262 (306)
T ss_dssp EEECTTCCEEC
T ss_pred EEEccCCCeec
Confidence 99999998764
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.72 E-value=3.1e-17 Score=183.63 Aligned_cols=231 Identities=16% Similarity=0.134 Sum_probs=171.8
Q ss_pred hhhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccC-ccccCCCCCcEEeeccccCCccCCh
Q 003086 549 NLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLP-PSLKKLKNLQILDVSYCQNLKMLPS 627 (849)
Q Consensus 549 ~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~ 627 (849)
.+|..+. +++++|+|++|.+.. ..+..|.++++|++|+|++| .+..++ ..+.++++|++|+|++|......+.
T Consensus 57 ~iP~~~~--~~l~~L~L~~n~i~~---~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 130 (440)
T 3zyj_A 57 EVPDGIS--TNTRLLNLHENQIQI---IKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLTTIPNG 130 (440)
T ss_dssp SCCSCCC--TTCSEEECCSCCCCE---ECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSCCSSCCTT
T ss_pred cCCCCCC--CCCcEEEccCCcCCe---eCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCcCCeeCHh
Confidence 3444443 689999999999872 44578999999999999999 666665 5788999999999998765554455
Q ss_pred hhhcccCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcC
Q 003086 628 YVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVN 707 (849)
Q Consensus 628 ~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 707 (849)
.+..+++|++|++++|.+....+..+..+++|+.|++..+.. ........+.++++|+.|++++|.++.+. .+..
T Consensus 131 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~---l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~ 205 (440)
T 3zyj_A 131 AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR---LSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTP 205 (440)
T ss_dssp TSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTT---CCEECTTTTTTCSSCCEEECTTSCCSSCC--CCTT
T ss_pred HhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCC---cceeCcchhhcccccCeecCCCCcCcccc--ccCC
Confidence 788999999999999998855556788999999998765421 12223345788899999999999877654 4778
Q ss_pred CCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCC-CCCcCCCCCCCCCceEEEeeCCccccccccccCcc
Q 003086 708 LRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKT-SPVWLNPASLPMLRYLSVCSGNLSKMHDSFWGENN 786 (849)
Q Consensus 708 ~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 786 (849)
+++|+.|+|++|.+... ....+..+++|+.|+++++.... .+..+ ..+++|+.|+|++|+++.++...+..
T Consensus 206 l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~-- 277 (440)
T 3zyj_A 206 LIKLDELDLSGNHLSAI----RPGSFQGLMHLQKLWMIQSQIQVIERNAF--DNLQSLVEINLAHNNLTLLPHDLFTP-- 277 (440)
T ss_dssp CSSCCEEECTTSCCCEE----CTTTTTTCTTCCEEECTTCCCCEECTTSS--TTCTTCCEEECTTSCCCCCCTTTTSS--
T ss_pred CcccCEEECCCCccCcc----ChhhhccCccCCEEECCCCceeEEChhhh--cCCCCCCEEECCCCCCCccChhHhcc--
Confidence 88999999998876543 12345667888888888764432 34455 77888999999988888777655443
Q ss_pred cccccceeecccc
Q 003086 787 TVWKIEALLFESL 799 (849)
Q Consensus 787 fp~~L~~L~l~~l 799 (849)
++ +|+.|.+.+.
T Consensus 278 l~-~L~~L~L~~N 289 (440)
T 3zyj_A 278 LH-HLERIHLHHN 289 (440)
T ss_dssp CT-TCCEEECCSS
T ss_pred cc-CCCEEEcCCC
Confidence 45 6777766653
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.71 E-value=2.9e-18 Score=183.05 Aligned_cols=267 Identities=15% Similarity=0.090 Sum_probs=194.2
Q ss_pred hccCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCcccc
Q 003086 527 SNLKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLK 606 (849)
Q Consensus 527 ~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~ 606 (849)
.+++++.|.+.+. .+....+..|.++++|++|+|++|.+. ..++ ++.+++|++|+|++| .+..+|
T Consensus 32 ~~~~L~~L~L~~n-----~l~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~-~~~l~~L~~L~Ls~n-~l~~l~---- 96 (317)
T 3o53_A 32 SAWNVKELDLSGN-----PLSQISAADLAPFTKLELLNLSSNVLY----ETLD-LESLSTLRTLDLNNN-YVQELL---- 96 (317)
T ss_dssp TGGGCSEEECTTS-----CCCCCCHHHHTTCTTCCEEECTTSCCE----EEEE-ETTCTTCCEEECCSS-EEEEEE----
T ss_pred cCCCCCEEECcCC-----ccCcCCHHHhhCCCcCCEEECCCCcCC----cchh-hhhcCCCCEEECcCC-cccccc----
Confidence 4567888876654 334456778999999999999999986 3343 899999999999999 777665
Q ss_pred CCCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhh-hccc
Q 003086 607 KLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISEL-KNLT 685 (849)
Q Consensus 607 ~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l-~~l~ 685 (849)
.+++|++|++++|......+. .+++|++|++++|.+....+..++.+++|+.|++..+. .....+..+ ..++
T Consensus 97 ~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~----l~~~~~~~~~~~l~ 169 (317)
T 3o53_A 97 VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE----IDTVNFAELAASSD 169 (317)
T ss_dssp ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC----CCEEEGGGGGGGTT
T ss_pred CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC----CCcccHHHHhhccC
Confidence 348999999998775544333 47889999999999986667788999999999976653 233334445 4789
Q ss_pred cccceeeeeccCcccchHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCCCcCCCCCCCCCc
Q 003086 686 RLRKLGLQLTCGDEIEEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSPVWLNPASLPMLR 765 (849)
Q Consensus 686 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~ 765 (849)
+|+.|++++|.++.... ...+++|+.|+|++|.++.. ...+..+++|+.|+++++....+|..+ ..+++|+
T Consensus 170 ~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l-----~~~~~~l~~L~~L~L~~N~l~~l~~~~--~~l~~L~ 240 (317)
T 3o53_A 170 TLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-----GPEFQSAAGVTWISLRNNKLVLIEKAL--RFSQNLE 240 (317)
T ss_dssp TCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-----CGGGGGGTTCSEEECTTSCCCEECTTC--CCCTTCC
T ss_pred cCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcc-----hhhhcccCcccEEECcCCcccchhhHh--hcCCCCC
Confidence 99999999998876633 34589999999999977642 122556789999999987666667666 7899999
Q ss_pred eEEEeeCCcc-ccccccccCcccccccceeecccccccccccccccccccccceeeecccccCc
Q 003086 766 YLSVCSGNLS-KMHDSFWGENNTVWKIEALLFESLSDLGIEWTRLQGVMPSLHIVNASWCPELD 828 (849)
Q Consensus 766 ~L~L~~n~l~-~~~~~~~~~~~fp~~L~~L~l~~l~~L~l~~~~~~~~~p~L~~L~i~~c~~L~ 828 (849)
.|++++|.+. .....+++ .+| .|+.|.+.++..+. .........|.+....-..|..|.
T Consensus 241 ~L~l~~N~~~~~~~~~~~~--~~~-~L~~l~l~~~~~l~-~~~~~~~~~~~~~~~~~~cc~~l~ 300 (317)
T 3o53_A 241 HFDLRGNGFHCGTLRDFFS--KNQ-RVQTVAKQTVKKLT-GQNEEECTVPTLGHYGAYCCEDLP 300 (317)
T ss_dssp EEECTTCCCBHHHHHHHHH--TCH-HHHHHHHHHHHHHH-SSSSCCCSSTTCEEETTEEEBCCT
T ss_pred EEEccCCCccCcCHHHHHh--ccc-cceEEECCCchhcc-CCchhccCCCceecccceeeccCC
Confidence 9999999987 32222332 356 78888877766666 333333333433333334455554
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=1.1e-17 Score=189.18 Aligned_cols=238 Identities=13% Similarity=0.030 Sum_probs=150.8
Q ss_pred CCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcccCC
Q 003086 556 ECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQL 635 (849)
Q Consensus 556 ~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L 635 (849)
.+++|++|+|++|.+.. ..|..|+.+++|++|+|++| .+...+. ++.+++|++|+|++|.. ..+| ..++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l-~~l~----~~~~L 101 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQ---ISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYV-QELL----VGPSI 101 (487)
T ss_dssp TGGGCCEEECCSSCCCC---CCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSEE-EEEE----ECTTC
T ss_pred cCCCccEEEeeCCcCCC---CCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCcC-CCCC----CCCCc
Confidence 34478888888887762 34567778888888888887 5655544 77788888888886653 3333 23778
Q ss_pred cEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhc-CCCCCCeE
Q 003086 636 RALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALV-NLRELQFL 714 (849)
Q Consensus 636 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L 714 (849)
++|++++|.+.+..+. .+++|+.|++..+. ..+..+..++.+++|+.|++++|.++...+..+. .+++|+.|
T Consensus 102 ~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~----l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 102 ETLHAANNNISRVSCS---RGQGKKNIYLANNK----ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (487)
T ss_dssp CEEECCSSCCCCEEEC---CCSSCEEEECCSSC----CCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred CEEECcCCcCCCCCcc---ccCCCCEEECCCCC----CCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEE
Confidence 8888888877644332 35677777755542 2333344567778888888888877766665554 67788888
Q ss_pred EEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCCCcCCCCCCCCCceEEEeeCCccccccccccCccccccccee
Q 003086 715 SISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSPVWLNPASLPMLRYLSVCSGNLSKMHDSFWGENNTVWKIEAL 794 (849)
Q Consensus 715 ~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~fp~~L~~L 794 (849)
+|++|.+++. .....+++|+.|+++++.....|..+ ..+++|+.|+|++|.+..++..+. .+| +|+.|
T Consensus 175 ~Ls~N~l~~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~l~~L~~L~Ls~N~l~~lp~~l~---~l~-~L~~L 242 (487)
T 3oja_A 175 NLQYNFIYDV------KGQVVFAKLKTLDLSSNKLAFMGPEF--QSAAGVTWISLRNNKLVLIEKALR---FSQ-NLEHF 242 (487)
T ss_dssp ECTTSCCCEE------ECCCCCTTCCEEECCSSCCCEECGGG--GGGTTCSEEECTTSCCCEECTTCC---CCT-TCCEE
T ss_pred ecCCCccccc------cccccCCCCCEEECCCCCCCCCCHhH--cCCCCccEEEecCCcCcccchhhc---cCC-CCCEE
Confidence 8887765432 23335777888888776554444444 677888888888888776655421 245 77777
Q ss_pred ecccccccccccccccccccccceeeec
Q 003086 795 LFESLSDLGIEWTRLQGVMPSLHIVNAS 822 (849)
Q Consensus 795 ~l~~l~~L~l~~~~~~~~~p~L~~L~i~ 822 (849)
.+.+.+...-........+|.|+.+.+.
T Consensus 243 ~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred EcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 7766543310111222345555555554
No 62
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.70 E-value=1.1e-15 Score=165.73 Aligned_cols=296 Identities=13% Similarity=0.103 Sum_probs=185.0
Q ss_pred CCCCccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCcc------CHHHH
Q 003086 158 YDHTLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTF------TEEQI 231 (849)
Q Consensus 158 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~------~~~~~ 231 (849)
..+..|+||+++++++.+++..+ +++.|+|++|+|||||++++++. . . .+|+++.... +...+
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~~~~~~~~~~~~ 77 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELYAERGHITREEL 77 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHHHTTTCBCHHHH
T ss_pred CChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeecccccccCCCHHHH
Confidence 34567999999999999988763 58999999999999999999873 2 1 6788776443 56677
Q ss_pred HHHHHHHhcC-----------------CCC--CCCHHHHHHHHHHHhcC-ccEEEEEcCCCccC-------HHHHHHHHh
Q 003086 232 MRSMLRNLGD-----------------ASA--GDDRGELLRKINQYLLG-KRYLIVMDDVWGED-------LAWWRRIYE 284 (849)
Q Consensus 232 ~~~i~~~l~~-----------------~~~--~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~~-------~~~~~~l~~ 284 (849)
+..+.+.+.. ..+ ..+..++.+.+.+.... ++++|||||++..+ ...+..+..
T Consensus 78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~ 157 (350)
T 2qen_A 78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAY 157 (350)
T ss_dssp HHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHH
Confidence 7777766542 001 23556666667666543 38999999998732 234444444
Q ss_pred cCCCCCCceEEEEecchhh-hhh---------ccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHH
Q 003086 285 GLPKGKGSSIIITTRNGKV-SQK---------MGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIV 354 (849)
Q Consensus 285 ~l~~~~~s~ilvTtr~~~v-~~~---------~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~ 354 (849)
.+....+.++|+|++...+ ... ........+++.+|+.+|+.+++........ .....+.+..|+
T Consensus 158 ~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~-----~~~~~~~~~~i~ 232 (350)
T 2qen_A 158 AYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVN-----LDVPENEIEEAV 232 (350)
T ss_dssp HHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTT-----CCCCHHHHHHHH
T ss_pred HHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHH
Confidence 3332347889999987543 211 0001113789999999999999987642111 111245778999
Q ss_pred HhcCCchhHHHHHhhhhhcCCCChHHHHHHHHhhhhhhccCCchHHHHH-HHhhhCCChhhHHHHHHhccCCCCccccHH
Q 003086 355 EKCKGLPLAIKAVGGMMLYKPPTYNEWRRTADNFRDELAENDDSVMASL-QLSYDELPPYLKSCFLSFSVYPEDCVIRKE 433 (849)
Q Consensus 355 ~~c~G~PLai~~~~~~l~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l-~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~ 433 (849)
+.|+|+|+++..++..+..... ...+. ........ ..+...+ .+.+ + ++..+..+..+|. . .++..
T Consensus 233 ~~tgG~P~~l~~~~~~~~~~~~-~~~~~---~~~~~~~~---~~~~~~l~~l~~-~-~~~~~~~l~~la~-g---~~~~~ 299 (350)
T 2qen_A 233 ELLDGIPGWLVVFGVEYLRNGD-FGRAM---KRTLEVAK---GLIMGELEELRR-R-SPRYVDILRAIAL-G---YNRWS 299 (350)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCC-HHHHH---HHHHHHHH---HHHHHHHHHHHH-H-CHHHHHHHHHHHT-T---CCSHH
T ss_pred HHhCCCHHHHHHHHHHHhcccc-HhHHH---HHHHHHHH---HHHHHHHHHHHh-C-ChhHHHHHHHHHh-C---CCCHH
Confidence 9999999999998876432211 22221 11111100 0011111 1122 2 7788999999987 2 13445
Q ss_pred HHHHHhHhcCCCcCCCCCCHHHHHHHHHHhhhhccceEEeccccCCceeeee-ecHHHHHHHH
Q 003086 434 QLVYWWIGEGFVPQRNGRSSIEAGEDCFSGLTNRCLVEVVDKAYNKMISTCK-IHDMVRDLVI 495 (849)
Q Consensus 434 ~li~~wia~g~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~-~Hdlv~~~~~ 495 (849)
.+....-+. . .+. .......+++.|.+.+++.... + .|+ .|++++++.+
T Consensus 300 ~l~~~~~~~-~----~~~-~~~~~~~~l~~L~~~gli~~~~----~---~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 300 LIRDYLAVK-G----TKI-PEPRLYALLENLKKMNWIVEED----N---TYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHT-T----CCC-CHHHHHHHHHHHHHTTSEEEET----T---EEEESSHHHHHHHT
T ss_pred HHHHHHHHH-h----CCC-CHHHHHHHHHHHHhCCCEEecC----C---EEEEecHHHHHHHc
Confidence 554433221 0 011 2455778999999999998752 1 244 4889888763
No 63
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.70 E-value=4e-16 Score=173.23 Aligned_cols=300 Identities=10% Similarity=0.004 Sum_probs=187.9
Q ss_pred CCCccccccccHHHHHHHH-hcc--C--CCeEEEEE--EcCCCCcHHHHHHHHhcChhhh---cccC-ceEEEEeCCccC
Q 003086 159 DHTLVVGLEGDTRKIKDWL-FEA--E--EGILAIGV--VGMGGLGKTTIAQKVFNDREIE---NWFE-RRMWVSVSQTFT 227 (849)
Q Consensus 159 ~~~~~vGr~~~~~~l~~~L-~~~--~--~~~~vi~I--~G~~GiGKTtLa~~v~~~~~~~---~~f~-~~~wv~~s~~~~ 227 (849)
.+..++||+++++++.+++ ... . .....+.| +|++|+||||||+.+++..... ..|. .++|+++....+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 3467999999999999998 431 1 23456667 9999999999999998842211 0123 257888777788
Q ss_pred HHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHhc--CccEEEEEcCCCcc------CHHHHHHHHhcCCC----C--CC
Q 003086 228 EEQIMRSMLRNLGDASA--GDDRGELLRKINQYLL--GKRYLIVMDDVWGE------DLAWWRRIYEGLPK----G--KG 291 (849)
Q Consensus 228 ~~~~~~~i~~~l~~~~~--~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~------~~~~~~~l~~~l~~----~--~~ 291 (849)
...++..++..++...+ +.+..++...+.+.+. +++++|||||++.. +...+..+...+.. + ..
T Consensus 100 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 179 (412)
T ss_dssp HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence 99999999999976543 3356667777777764 67999999999872 12444444333321 2 34
Q ss_pred ceEEEEecchhhhhhcc--------ccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcC-----
Q 003086 292 SSIIITTRNGKVSQKMG--------VKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCK----- 358 (849)
Q Consensus 292 s~ilvTtr~~~v~~~~~--------~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~----- 358 (849)
..||+||+...+...+. ... ..+.+.+++.++++++|...+..... ......+....|++.|+
T Consensus 180 v~lI~~~~~~~~~~~l~~~~~~~~~~~~-~~i~l~~l~~~e~~~ll~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~ 255 (412)
T 1w5s_A 180 IGFLLVASDVRALSYMREKIPQVESQIG-FKLHLPAYKSRELYTILEQRAELGLR---DTVWEPRHLELISDVYGEDKGG 255 (412)
T ss_dssp EEEEEEEEETHHHHHHHHHCHHHHTTCS-EEEECCCCCHHHHHHHHHHHHHHHBC---TTSCCHHHHHHHHHHHCGGGTS
T ss_pred EEEEEEeccccHHHHHhhhcchhhhhcC-CeeeeCCCCHHHHHHHHHHHHHhcCC---CCCCChHHHHHHHHHHHHhccC
Confidence 45888887655332211 111 23899999999999999876532211 11123567788999999
Q ss_pred -CchhHHHHHhhhh---h--cC--CCChHHHHHHHHhhhhhhccCCchHHHHHHHhhhCCChhhHHHHHHhccCC--CCc
Q 003086 359 -GLPLAIKAVGGMM---L--YK--PPTYNEWRRTADNFRDELAENDDSVMASLQLSYDELPPYLKSCFLSFSVYP--EDC 428 (849)
Q Consensus 359 -G~PLai~~~~~~l---~--~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~s~fp--~~~ 428 (849)
|.|..+..++... . .. .-+.+.+..++..... ...+.-++..||++.+.++..++.+. .+.
T Consensus 256 ~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~ 326 (412)
T 1w5s_A 256 DGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSIHELIILRLIAEATLGGME 326 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTTCS
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCC
Confidence 9997665554321 1 11 1123334333322110 22344467889999999999888653 233
Q ss_pred cccHHHHHHHhH--h-cCCCcCCCCCCHHHHHHHHHHhhhhccceEEec
Q 003086 429 VIRKEQLVYWWI--G-EGFVPQRNGRSSIEAGEDCFSGLTNRCLVEVVD 474 (849)
Q Consensus 429 ~i~~~~li~~wi--a-~g~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~ 474 (849)
.++..++...+. + . ... ...........+++.|+..+++....
T Consensus 327 ~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 327 WINAGLLRQRYEDASLT-MYN--VKPRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp SBCHHHHHHHHHHHHHH-HSC--CCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CccHHHHHHHHHHHHHh-hcC--CCCCCHHHHHHHHHHHHhCCCEEeec
Confidence 455555554442 2 1 110 01112455678899999999998764
No 64
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=9.6e-17 Score=170.21 Aligned_cols=201 Identities=20% Similarity=0.168 Sum_probs=152.0
Q ss_pred hcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhccc
Q 003086 554 FSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFI 633 (849)
Q Consensus 554 ~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~ 633 (849)
+.++++|+.|++++|.+. .+| .+..+++|++|+|++| .+..+|. +..+++|++|++++|. +..+| .+..++
T Consensus 37 ~~~l~~L~~L~l~~~~i~----~l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~ 107 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT----TIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQ 107 (308)
T ss_dssp HHHHHTCCEEECTTSCCC----CCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCT
T ss_pred HHHcCCcCEEEeeCCCcc----Cch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCC
Confidence 345678888888888876 444 6788889999999888 7777776 8888899999998766 44454 588888
Q ss_pred CCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCe
Q 003086 634 QLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQF 713 (849)
Q Consensus 634 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 713 (849)
+|++|++++|.+. .++. ++.+++|+.|++..+.. .. ...+..+++|+.|++++|.+....+ +..+++|+.
T Consensus 108 ~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l----~~--~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~ 177 (308)
T 1h6u_A 108 SIKTLDLTSTQIT-DVTP-LAGLSNLQVLYLDLNQI----TN--ISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTT 177 (308)
T ss_dssp TCCEEECTTSCCC-CCGG-GTTCTTCCEEECCSSCC----CC--CGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred CCCEEECCCCCCC-Cchh-hcCCCCCCEEECCCCcc----Cc--CccccCCCCccEEEccCCcCCCChh--hcCCCCCCE
Confidence 8999999888876 3443 78888888888766532 21 2237888999999999988776544 788899999
Q ss_pred EEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCCCcCCCCCCCCCceEEEeeCCccccccccc
Q 003086 714 LSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSPVWLNPASLPMLRYLSVCSGNLSKMHDSFW 782 (849)
Q Consensus 714 L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 782 (849)
|++++|.+.+.. .+..+++|+.|+++++.....+. + ..+++|+.|++++|.++..+..+.
T Consensus 178 L~l~~n~l~~~~------~l~~l~~L~~L~L~~N~l~~~~~-l--~~l~~L~~L~l~~N~i~~~~~~~~ 237 (308)
T 1h6u_A 178 LKADDNKISDIS------PLASLPNLIEVHLKNNQISDVSP-L--ANTSNLFIVTLTNQTITNQPVFYN 237 (308)
T ss_dssp EECCSSCCCCCG------GGGGCTTCCEEECTTSCCCBCGG-G--TTCTTCCEEEEEEEEEECCCEECC
T ss_pred EECCCCccCcCh------hhcCCCCCCEEEccCCccCcccc-c--cCCCCCCEEEccCCeeecCCeeec
Confidence 999988776532 25567889999998876554442 3 789999999999999887655443
No 65
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.70 E-value=5.4e-17 Score=181.55 Aligned_cols=210 Identities=18% Similarity=0.079 Sum_probs=118.8
Q ss_pred hhhccCccchhcccccccccchhhhhhhhhcCCCcc-------------eEEecCCccccccccccccccCCCCccceEe
Q 003086 525 LISNLKLRALMSTTKTAEVNNIASNLATKFSECRYL-------------RVLDISRSIFELPLKGLLSQTGSLQHLSYLC 591 (849)
Q Consensus 525 ~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~L-------------r~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~ 591 (849)
...+++++.|.+.+ +.+.+.+|..++++++| +.|++++|.+. .+|.. .++|++|+
T Consensus 30 i~~L~~L~~L~l~~-----n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~----~lp~~---~~~L~~L~ 97 (454)
T 1jl5_A 30 AENVKSKTEYYNAW-----SEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS----SLPEL---PPHLESLV 97 (454)
T ss_dssp ----CCHHHHHHHH-----HHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS----CCCSC---CTTCSEEE
T ss_pred HhcccchhhhhccC-----CcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc----cCCCC---cCCCCEEE
Confidence 44556666665543 33444566667776664 77888887775 44542 36788888
Q ss_pred ccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCccccccccccccCcccccCCC
Q 003086 592 LSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSS 671 (849)
Q Consensus 592 L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~ 671 (849)
+++| .+..+|.. +.+|++|++++|.. ..+|.. .++|++|++++|.+. .+| .++.+++|+.|++..+....
T Consensus 98 l~~n-~l~~lp~~---~~~L~~L~l~~n~l-~~l~~~---~~~L~~L~L~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~ 167 (454)
T 1jl5_A 98 ASCN-SLTELPEL---PQSLKSLLVDNNNL-KALSDL---PPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLKK 167 (454)
T ss_dssp CCSS-CCSSCCCC---CTTCCEEECCSSCC-SCCCSC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSC
T ss_pred ccCC-cCCccccc---cCCCcEEECCCCcc-CcccCC---CCCCCEEECcCCCCC-CCc-ccCCCCCCCEEECCCCcCcc
Confidence 8888 66667753 35677777775543 233321 157777777777766 366 47777777777765553221
Q ss_pred CCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCC
Q 003086 672 QPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKT 751 (849)
Q Consensus 672 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~ 751 (849)
.+. ...+|+.|++++|.+.... .+..+++|+.|++++|.+.+.. . .+++|+.|+++++....
T Consensus 168 -----lp~---~~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~------~--~~~~L~~L~l~~n~l~~ 229 (454)
T 1jl5_A 168 -----LPD---LPPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLP------D--LPLSLESIVAGNNILEE 229 (454)
T ss_dssp -----CCC---CCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCC------C--CCTTCCEEECCSSCCSS
T ss_pred -----cCC---CcccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCC------C--CcCcccEEECcCCcCCc
Confidence 111 1236667777776655543 3666677777777666544310 0 12355566665544333
Q ss_pred CCCcCCCCCCCCCceEEEeeCCcccc
Q 003086 752 SPVWLNPASLPMLRYLSVCSGNLSKM 777 (849)
Q Consensus 752 ~p~~~~~~~l~~L~~L~L~~n~l~~~ 777 (849)
+|. + +.+++|++|++++|.+..+
T Consensus 230 lp~-~--~~l~~L~~L~l~~N~l~~l 252 (454)
T 1jl5_A 230 LPE-L--QNLPFLTTIYADNNLLKTL 252 (454)
T ss_dssp CCC-C--TTCTTCCEEECCSSCCSSC
T ss_pred ccc-c--CCCCCCCEEECCCCcCCcc
Confidence 343 2 4555556666655555543
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=1.5e-17 Score=188.00 Aligned_cols=217 Identities=15% Similarity=0.042 Sum_probs=172.9
Q ss_pred ccCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccC
Q 003086 528 NLKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKK 607 (849)
Q Consensus 528 ~~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~ 607 (849)
++++++|.+.+. .+....|..|.++++|++|+|++|.+. ..++ ++.+++|++|+|++| .+..+|.
T Consensus 33 ~~~L~~L~Ls~n-----~l~~~~~~~~~~l~~L~~L~Ls~N~l~----~~~~-l~~l~~L~~L~Ls~N-~l~~l~~---- 97 (487)
T 3oja_A 33 AWNVKELDLSGN-----PLSQISAADLAPFTKLELLNLSSNVLY----ETLD-LESLSTLRTLDLNNN-YVQELLV---- 97 (487)
T ss_dssp GGGCCEEECCSS-----CCCCCCGGGGTTCTTCCEEECTTSCCE----EEEE-CTTCTTCCEEECCSS-EEEEEEE----
T ss_pred CCCccEEEeeCC-----cCCCCCHHHHhCCCCCCEEEeeCCCCC----CCcc-cccCCCCCEEEecCC-cCCCCCC----
Confidence 457888877664 334456778999999999999999987 3333 899999999999999 7777664
Q ss_pred CCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhh-cccc
Q 003086 608 LKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELK-NLTR 686 (849)
Q Consensus 608 L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~-~l~~ 686 (849)
.++|++|++++|......+. .+++|+.|++++|.+.+..|..++.+++|+.|++..+. ..+..+..+. .+++
T Consensus 98 ~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~----l~~~~~~~l~~~l~~ 170 (487)
T 3oja_A 98 GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE----IDTVNFAELAASSDT 170 (487)
T ss_dssp CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC----CCEEEGGGGGGGTTT
T ss_pred CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC----CCCcChHHHhhhCCc
Confidence 38999999998875554433 46899999999999997778889999999999976653 3444455665 7999
Q ss_pred ccceeeeeccCcccchHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCCCcCCCCCCCCCce
Q 003086 687 LRKLGLQLTCGDEIEEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSPVWLNPASLPMLRY 766 (849)
Q Consensus 687 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~ 766 (849)
|+.|++++|.++...+ +..+++|+.|+|++|.+++. ...+..+++|+.|+++++....+|.++ ..+++|+.
T Consensus 171 L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~-----~~~~~~l~~L~~L~Ls~N~l~~lp~~l--~~l~~L~~ 241 (487)
T 3oja_A 171 LEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-----GPEFQSAAGVTWISLRNNKLVLIEKAL--RFSQNLEH 241 (487)
T ss_dssp CCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-----CGGGGGGTTCSEEECTTSCCCEECTTC--CCCTTCCE
T ss_pred ccEEecCCCccccccc--cccCCCCCEEECCCCCCCCC-----CHhHcCCCCccEEEecCCcCcccchhh--ccCCCCCE
Confidence 9999999998876643 44689999999999987653 123556789999999987666667776 78999999
Q ss_pred EEEeeCCcc
Q 003086 767 LSVCSGNLS 775 (849)
Q Consensus 767 L~L~~n~l~ 775 (849)
|++++|.+.
T Consensus 242 L~l~~N~l~ 250 (487)
T 3oja_A 242 FDLRGNGFH 250 (487)
T ss_dssp EECTTCCBC
T ss_pred EEcCCCCCc
Confidence 999999887
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.68 E-value=2.5e-17 Score=175.34 Aligned_cols=157 Identities=19% Similarity=0.167 Sum_probs=105.2
Q ss_pred ceEEecCCccccccccccccccC-------CCCccceEeccCCCCCcccCccc--cCCCCCcEEeeccccCCccCChhhh
Q 003086 560 LRVLDISRSIFELPLKGLLSQTG-------SLQHLSYLCLSNTHPLIHLPPSL--KKLKNLQILDVSYCQNLKMLPSYVQ 630 (849)
Q Consensus 560 Lr~L~L~~~~~~~~~~~~p~~~~-------~l~~Lr~L~L~~~~~~~~lp~~i--~~L~~L~~L~L~~~~~~~~lp~~i~ 630 (849)
|+.|+|++|.+.. ..+|..+. .+++|++|+|++|.....+|..+ +.+++|++|++++|..... |..+.
T Consensus 65 L~~L~L~~n~l~~--~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~ 141 (312)
T 1wwl_A 65 IKSLSLKRLTVRA--ARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLA 141 (312)
T ss_dssp HHHCCCCEEEEEE--EECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHH
T ss_pred HhhcccccccccC--CCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHH
Confidence 7888888888742 13455554 68888888888883334677766 7888888888887765544 77777
Q ss_pred cc-----cCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCC--Cchhh--hccccccceeeeeccCcccc
Q 003086 631 SF-----IQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGC--RISEL--KNLTRLRKLGLQLTCGDEIE 701 (849)
Q Consensus 631 ~l-----~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~--~~~~l--~~l~~L~~L~l~~~~~~~~~ 701 (849)
.+ ++|++|++++|.+.+..|..++.+++|+.|++..+.. .+. .+..+ ..+++|+.|++++|.++...
T Consensus 142 ~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l----~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 217 (312)
T 1wwl_A 142 ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE----LGERGLISALCPLKFPTLQVLALRNAGMETPS 217 (312)
T ss_dssp HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTT----CHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH
T ss_pred HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCc----CcchHHHHHHHhccCCCCCEEECCCCcCcchH
Confidence 77 8888888888888755557777888888887655521 111 12223 66777777777777665322
Q ss_pred ---hHhhcCCCCCCeEEEEeecCCC
Q 003086 702 ---EDALVNLRELQFLSISCFDSHG 723 (849)
Q Consensus 702 ---~~~l~~~~~L~~L~L~~~~~~~ 723 (849)
...+..+++|+.|++++|.+.+
T Consensus 218 ~~~~~~~~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 218 GVCSALAAARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp HHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred HHHHHHHhcCCCCCEEECCCCcCCc
Confidence 2344566777777777665543
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.68 E-value=5.5e-16 Score=178.76 Aligned_cols=234 Identities=20% Similarity=0.089 Sum_probs=140.7
Q ss_pred cCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCC
Q 003086 529 LKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKL 608 (849)
Q Consensus 529 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L 608 (849)
++++.|.+.++. +. .+|. .+++|++|+|++|.+. .+|. .+++|++|+|++| .+..+|. .+
T Consensus 61 ~~L~~L~L~~N~-----l~-~lp~---~l~~L~~L~Ls~N~l~----~lp~---~l~~L~~L~Ls~N-~l~~l~~---~l 120 (622)
T 3g06_A 61 AHITTLVIPDNN-----LT-SLPA---LPPELRTLEVSGNQLT----SLPV---LPPGLLELSIFSN-PLTHLPA---LP 120 (622)
T ss_dssp TTCSEEEECSCC-----CS-CCCC---CCTTCCEEEECSCCCS----CCCC---CCTTCCEEEECSC-CCCCCCC---CC
T ss_pred CCCcEEEecCCC-----CC-CCCC---cCCCCCEEEcCCCcCC----cCCC---CCCCCCEEECcCC-cCCCCCC---CC
Confidence 566666555432 11 2333 4567777777777765 4554 5677777777777 6666665 55
Q ss_pred CCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhcccccc
Q 003086 609 KNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLR 688 (849)
Q Consensus 609 ~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~ 688 (849)
.+|++|++++|. +..+|.. +++|++|++++|.+. .+|.. +.+|+.|++..+... . .+ ..+++|+
T Consensus 121 ~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l~-~l~~~---~~~L~~L~L~~N~l~----~-l~---~~~~~L~ 184 (622)
T 3g06_A 121 SGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLA-SLPAL---PSELCKLWAYNNQLT----S-LP---MLPSGLQ 184 (622)
T ss_dssp TTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS----C-CC---CCCTTCC
T ss_pred CCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcCC-CcCCc---cCCCCEEECCCCCCC----C-Cc---ccCCCCc
Confidence 677777777554 4445553 367777777777665 44442 345666655444221 1 11 3457788
Q ss_pred ceeeeeccCcccchHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCCCcCCCCCCCCCceEE
Q 003086 689 KLGLQLTCGDEIEEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSPVWLNPASLPMLRYLS 768 (849)
Q Consensus 689 ~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~ 768 (849)
.|++++|.++.+.. ..++|+.|++++|.++.. .. .+++|+.|+++++....+| ..+++|++|+
T Consensus 185 ~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l------~~--~~~~L~~L~Ls~N~L~~lp-----~~l~~L~~L~ 247 (622)
T 3g06_A 185 ELSVSDNQLASLPT----LPSELYKLWAYNNRLTSL------PA--LPSGLKELIVSGNRLTSLP-----VLPSELKELM 247 (622)
T ss_dssp EEECCSSCCSCCCC----CCTTCCEEECCSSCCSSC------CC--CCTTCCEEECCSSCCSCCC-----CCCTTCCEEE
T ss_pred EEECCCCCCCCCCC----ccchhhEEECcCCccccc------CC--CCCCCCEEEccCCccCcCC-----CCCCcCcEEE
Confidence 88888887665432 246788888887765432 11 2467888888876554445 4567888888
Q ss_pred EeeCCccccccccccCcccccccceeecccccccccccccccccccccceeeeccc
Q 003086 769 VCSGNLSKMHDSFWGENNTVWKIEALLFESLSDLGIEWTRLQGVMPSLHIVNASWC 824 (849)
Q Consensus 769 L~~n~l~~~~~~~~~~~~fp~~L~~L~l~~l~~L~l~~~~~~~~~p~L~~L~i~~c 824 (849)
|++|.|+.++. .++ +|+.|++.++. +. .++.....+|+|+.|++++|
T Consensus 248 Ls~N~L~~lp~------~~~-~L~~L~Ls~N~-L~-~lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 248 VSGNRLTSLPM------LPS-GLLSLSVYRNQ-LT-RLPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp CCSSCCSCCCC------CCT-TCCEEECCSSC-CC-SCCGGGGGSCTTCEEECCSC
T ss_pred CCCCCCCcCCc------ccc-cCcEEeCCCCC-CC-cCCHHHhhccccCEEEecCC
Confidence 88888877655 234 78888777652 33 33222233444444444444
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.67 E-value=3.5e-16 Score=163.38 Aligned_cols=203 Identities=18% Similarity=0.074 Sum_probs=155.7
Q ss_pred CcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCc-cccCCCCCcEEeeccccCCccCChhhhcccCCc
Q 003086 558 RYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPP-SLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLR 636 (849)
Q Consensus 558 ~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 636 (849)
++|++|+|++|.+.. ..+..|..+++|++|+|++| .+..+|. .+..+++|++|++++|......|..+.++++|+
T Consensus 28 ~~l~~L~ls~n~l~~---~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 28 FSTKNLDLSFNPLRH---LGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (276)
T ss_dssp TTCCEEECTTCCCCE---ECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CCccEEECCCCcccc---cCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCcccc
Confidence 579999999999872 33448899999999999999 6766664 689999999999998887777778899999999
Q ss_pred EeeccCCCCccccCccccccccccccCcccccCCCCCCCC-CchhhhccccccceeeeeccCcccchHhhcCCCCCC---
Q 003086 637 ALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGC-RISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQ--- 712 (849)
Q Consensus 637 ~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~--- 712 (849)
+|++++|.+....+..++.+++|++|++..+.. ... .+..+..+++|+.|++++|.+....+..+..+++|+
T Consensus 104 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l----~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~ 179 (276)
T 2z62_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLI----QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179 (276)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCC----CCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred EEECCCCCccccCchhcccCCCCCEEECcCCcc----ceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccc
Confidence 999999998865555789999999999766532 222 356789999999999999988877665555555555
Q ss_pred -eEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCCC-cCCCCCCCCCceEEEeeCCcc
Q 003086 713 -FLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSPV-WLNPASLPMLRYLSVCSGNLS 775 (849)
Q Consensus 713 -~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~~n~l~ 775 (849)
.|++++|.+.... .......+|+.|+++++.....|. .+ ..+++|+.|+|++|.+.
T Consensus 180 l~L~ls~n~l~~~~-----~~~~~~~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 180 LSLDLSLNPMNFIQ-----PGAFKEIRLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp EEEECCSSCCCEEC-----TTSSCSCCEEEEECCSSCCSCCCTTTT--TTCCSCCEEECCSSCBC
T ss_pred eeeecCCCcccccC-----ccccCCCcccEEECCCCceeecCHhHh--cccccccEEEccCCccc
Confidence 7888888665321 122233478888888765444343 34 67889999999888775
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.67 E-value=4e-16 Score=162.96 Aligned_cols=209 Identities=19% Similarity=0.199 Sum_probs=119.0
Q ss_pred ccccccCCCCccceEeccCCCCCcccCc-cccCCCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCcccc
Q 003086 576 GLLSQTGSLQHLSYLCLSNTHPLIHLPP-SLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFG 654 (849)
Q Consensus 576 ~~p~~~~~l~~Lr~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~ 654 (849)
.+|..+. ++|++|+|++| .+..+|. .+..+++|++|++++|......+..+.++++|++|++++|.+....+..++
T Consensus 21 ~ip~~l~--~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (276)
T 2z62_A 21 KIPDNLP--FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97 (276)
T ss_dssp SCCSSSC--TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred ccCCCCC--CCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc
Confidence 4454442 46777777777 5555554 566777777777776655444455666777777777777776655555667
Q ss_pred ccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccc-hHhhcCCCCCCeEEEEeecCCCCchhhhcccc
Q 003086 655 KLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIE-EDALVNLRELQFLSISCFDSHGSDLVAKIDEL 733 (849)
Q Consensus 655 ~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l 733 (849)
.+++|+.|++..+.. .......+.++++|+.|++++|.+.... +..+..+++|+.|++++|.++... ...+..+
T Consensus 98 ~l~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l 172 (276)
T 2z62_A 98 GLSSLQKLVAVETNL----ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-CTDLRVL 172 (276)
T ss_dssp TCTTCCEEECTTSCC----CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC-GGGGHHH
T ss_pred CCccccEEECCCCCc----cccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC-HHHhhhh
Confidence 777777776554422 2222223666777777777777655532 456666777777777776654321 1122333
Q ss_pred CCCCCCC-eEEEeccCCCCCCCcCCCCCCCCCceEEEeeCCccccccccccCcccccccceeecc
Q 003086 734 YPPEQLD-ELSLNFYPGKTSPVWLNPASLPMLRYLSVCSGNLSKMHDSFWGENNTVWKIEALLFE 797 (849)
Q Consensus 734 ~~~~~L~-~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~fp~~L~~L~l~ 797 (849)
..++.|. .|+++++.....+... ...++|++|+|++|.++.++...+.. ++ +|+.|.+.
T Consensus 173 ~~L~~l~l~L~ls~n~l~~~~~~~--~~~~~L~~L~L~~n~l~~~~~~~~~~--l~-~L~~L~l~ 232 (276)
T 2z62_A 173 HQMPLLNLSLDLSLNPMNFIQPGA--FKEIRLKELALDTNQLKSVPDGIFDR--LT-SLQKIWLH 232 (276)
T ss_dssp HTCTTCCEEEECCSSCCCEECTTS--SCSCCEEEEECCSSCCSCCCTTTTTT--CC-SCCEEECC
T ss_pred hhccccceeeecCCCcccccCccc--cCCCcccEEECCCCceeecCHhHhcc--cc-cccEEEcc
Confidence 3333333 5666654433223222 23346777777777776665544332 34 55555544
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.66 E-value=4.3e-17 Score=173.46 Aligned_cols=206 Identities=18% Similarity=0.125 Sum_probs=157.6
Q ss_pred cCCCcceEEecCCcccccccccccccc--CCCCccceEeccCCCCCcccCccccCC-----CCCcEEeeccccCCccCCh
Q 003086 555 SECRYLRVLDISRSIFELPLKGLLSQT--GSLQHLSYLCLSNTHPLIHLPPSLKKL-----KNLQILDVSYCQNLKMLPS 627 (849)
Q Consensus 555 ~~l~~Lr~L~L~~~~~~~~~~~~p~~~--~~l~~Lr~L~L~~~~~~~~lp~~i~~L-----~~L~~L~L~~~~~~~~lp~ 627 (849)
.++++|++|+|++|.+.+ ..|..+ +.+++|++|+|++| .+..+|..++.+ ++|++|++++|......|.
T Consensus 92 ~~l~~L~~L~L~~n~l~~---~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~ 167 (312)
T 1wwl_A 92 LGISGLQELTLENLEVTG---TAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE 167 (312)
T ss_dssp HTTSCCCEEEEEEEBCBS---CCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTT
T ss_pred cCcCCccEEEccCCcccc---hhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHH
Confidence 378999999999999974 577776 89999999999999 777778888877 9999999998887777778
Q ss_pred hhhcccCCcEeeccCCCCccc--cCccc--cccccccccCcccccCCCCCCCCCc-hhhhccccccceeeeeccCcccch
Q 003086 628 YVQSFIQLRALDVTHCGSLQY--LPKGF--GKLLNLEVLLGFRPARSSQPEGCRI-SELKNLTRLRKLGLQLTCGDEIEE 702 (849)
Q Consensus 628 ~i~~l~~L~~L~l~~~~~~~~--~p~~i--~~l~~L~~L~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~ 702 (849)
.++++++|++|++++|.+.+. .|..+ +.+++|++|++..+.... ....+ ..+..+++|+.|++++|.+....+
T Consensus 168 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 245 (312)
T 1wwl_A 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET--PSGVCSALAAARVQLQGLDLSHNSLRDAAG 245 (312)
T ss_dssp TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC--HHHHHHHHHHTTCCCSEEECTTSCCCSSCC
T ss_pred HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc--hHHHHHHHHhcCCCCCEEECCCCcCCcccc
Confidence 999999999999999987644 34444 889999999977663210 00111 224577999999999998877553
Q ss_pred -HhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCCCcCCCCCCCCCceEEEeeCCccc
Q 003086 703 -DALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSPVWLNPASLPMLRYLSVCSGNLSK 776 (849)
Q Consensus 703 -~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~l~~ 776 (849)
..+..+++|+.|+|++|.++.. + ..+. ++|+.|+++++.....|. + ..+++|++|+|++|.+++
T Consensus 246 ~~~~~~l~~L~~L~Ls~N~l~~i--p---~~~~--~~L~~L~Ls~N~l~~~p~-~--~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 246 APSCDWPSQLNSLNLSFTGLKQV--P---KGLP--AKLSVLDLSYNRLDRNPS-P--DELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CSCCCCCTTCCEEECTTSCCSSC--C---SSCC--SEEEEEECCSSCCCSCCC-T--TTSCEEEEEECTTCTTTC
T ss_pred hhhhhhcCCCCEEECCCCccChh--h---hhcc--CCceEEECCCCCCCCChh-H--hhCCCCCEEeccCCCCCC
Confidence 4566678999999999876532 1 1121 678888888766554455 3 678888888888887764
No 72
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.66 E-value=1.7e-16 Score=165.18 Aligned_cols=199 Identities=21% Similarity=0.185 Sum_probs=125.1
Q ss_pred hcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhccc
Q 003086 554 FSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFI 633 (849)
Q Consensus 554 ~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~ 633 (849)
+..+++|+.|++++|.+. . +..++.+++|++|+|++| .+..+| .++.+++|++|++++|......|..+.+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~----~-~~~l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 109 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIK----S-VQGIQYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLT 109 (272)
T ss_dssp HHHHTTCCEEECTTSCCC----C-CTTGGGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred cccccceeeeeeCCCCcc----c-ccccccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCc
Confidence 345677888888887765 2 345777888888888887 566654 577788888888887665554555567788
Q ss_pred CCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCe
Q 003086 634 QLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQF 713 (849)
Q Consensus 634 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 713 (849)
+|++|++++|.+....+..++.+++|+.|++..+. ........+.++++|+.|++++|.++...+..+..+++|+.
T Consensus 110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 185 (272)
T 3rfs_A 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ----LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD 185 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc----cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCE
Confidence 88888888887764444456777777777755542 22223334567777777777777766665556667777777
Q ss_pred EEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCCCcCCCCCCCCCceEEEeeCCcc
Q 003086 714 LSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSPVWLNPASLPMLRYLSVCSGNLS 775 (849)
Q Consensus 714 L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~l~ 775 (849)
|++++|.+.+.. ...+..+++|+.|++.++. |. +.+|+|+.|+++.|.+.
T Consensus 186 L~L~~N~l~~~~----~~~~~~l~~L~~L~l~~N~------~~--~~~~~l~~l~~~~n~~~ 235 (272)
T 3rfs_A 186 LRLYQNQLKSVP----DGVFDRLTSLQYIWLHDNP------WD--CTCPGIRYLSEWINKHS 235 (272)
T ss_dssp EECCSSCCSCCC----TTTTTTCTTCCEEECCSSC------BC--CCTTTTHHHHHHHHHTG
T ss_pred EECCCCcCCccC----HHHHhCCcCCCEEEccCCC------cc--ccCcHHHHHHHHHHhCC
Confidence 777776554321 1123344555555555432 11 34455555555554444
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.66 E-value=1.3e-15 Score=158.44 Aligned_cols=199 Identities=19% Similarity=0.145 Sum_probs=93.8
Q ss_pred ceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCc-cccCCCCCcEEeeccccCCccCChhhhcccCCcEe
Q 003086 560 LRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPP-SLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRAL 638 (849)
Q Consensus 560 Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 638 (849)
++.++++++.+. .+|..+. .+|++|+|++| .+..+|. .+..+++|++|++++|......+..+.++++|++|
T Consensus 18 ~~~l~~~~~~l~----~ip~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 18 KNSVDCSSKKLT----AIPSNIP--ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL 90 (270)
T ss_dssp TTEEECTTSCCS----SCCSCCC--TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEE
T ss_pred CCEEEccCCCCC----ccCCCCC--CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEE
Confidence 344444444443 3343332 34455555554 3333332 34445555555554433222222223445555555
Q ss_pred eccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCeEEEEe
Q 003086 639 DVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSISC 718 (849)
Q Consensus 639 ~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~ 718 (849)
++++|.+....+..++.+++|+.|++..+. .....+..+..+++|+.|++++|.+....+..+..+++|+.|+|++
T Consensus 91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 166 (270)
T 2o6q_A 91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQ----LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN 166 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCSSCCEEECCSSC----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ECCCCcCCcCCHhHcccccCCCEEECCCCc----cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC
Confidence 555554442222334444444444433321 1222222345555566666666555554444455566666666665
Q ss_pred ecCCCCchhhhccccCCCCCCCeEEEeccCCCCCC-CcCCCCCCCCCceEEEeeCCcc
Q 003086 719 FDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSP-VWLNPASLPMLRYLSVCSGNLS 775 (849)
Q Consensus 719 ~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~L~~n~l~ 775 (849)
|.+.... ...+..+++|+.|+++++.....| ..+ ..+++|+.|+|++|.+.
T Consensus 167 n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 167 NQLKRVP----EGAFDKLTELKTLKLDNNQLKRVPEGAF--DSLEKLKMLQLQENPWD 218 (270)
T ss_dssp SCCSCCC----TTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBC
T ss_pred CcCcEeC----hhHhccCCCcCEEECCCCcCCcCCHHHh--ccccCCCEEEecCCCee
Confidence 5444321 112334555666666554332223 233 56788888888887654
No 74
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.65 E-value=1.4e-17 Score=145.64 Aligned_cols=81 Identities=22% Similarity=0.307 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHhh--hhccCchHHHHHHHHHHHHHHhhhhhhhhc
Q 003086 4 AVVQIFLERLLITLTEQTGYVNEFRDQFERLQSELQFMQSFLADADRL--KRKRNSQTLRTFMAELRELIYEAEDILADC 81 (849)
Q Consensus 4 ~~v~~~~~kl~~~l~~~~~~~~~~~~~~~~L~~~L~~i~~~l~~a~~~--~~~~~~~~~~~wl~~lr~~~yd~ed~ld~~ 81 (849)
|+|+++++||.+++.+|+..+.+|++++++|+++|++|++||.+|+.+ +..+ +.++.|+++|||++||+||+||+|
T Consensus 1 a~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d--~~vk~W~~~vrdlaYD~ED~iD~f 78 (115)
T 3qfl_A 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLD--SQDKLWADEVRELSYVIEDVVDKF 78 (115)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCC--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCC--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999987 4566 899999999999999999999999
Q ss_pred ccccccc
Q 003086 82 HLQSRDE 88 (849)
Q Consensus 82 ~~~~~~~ 88 (849)
.+ +..
T Consensus 79 ~~--~~~ 83 (115)
T 3qfl_A 79 LV--QVD 83 (115)
T ss_dssp HH--HHH
T ss_pred HH--Hhc
Confidence 98 544
No 75
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.65 E-value=9.3e-16 Score=171.53 Aligned_cols=241 Identities=22% Similarity=0.120 Sum_probs=118.8
Q ss_pred CCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcccCCc
Q 003086 557 CRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLR 636 (849)
Q Consensus 557 l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 636 (849)
.++|++|++++|.+. .+|.. +.+|++|++++| .+..+|.. .++|++|++++|... .+| .++++++|+
T Consensus 90 ~~~L~~L~l~~n~l~----~lp~~---~~~L~~L~l~~n-~l~~l~~~---~~~L~~L~L~~n~l~-~lp-~~~~l~~L~ 156 (454)
T 1jl5_A 90 PPHLESLVASCNSLT----ELPEL---PQSLKSLLVDNN-NLKALSDL---PPLLEYLGVSNNQLE-KLP-ELQNSSFLK 156 (454)
T ss_dssp CTTCSEEECCSSCCS----SCCCC---CTTCCEEECCSS-CCSCCCSC---CTTCCEEECCSSCCS-SCC-CCTTCTTCC
T ss_pred cCCCCEEEccCCcCC----ccccc---cCCCcEEECCCC-ccCcccCC---CCCCCEEECcCCCCC-CCc-ccCCCCCCC
Confidence 368999999999987 35543 245555555555 44444321 134555555544322 244 355555555
Q ss_pred EeeccCCCCccccCc-------------------cccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccC
Q 003086 637 ALDVTHCGSLQYLPK-------------------GFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCG 697 (849)
Q Consensus 637 ~L~l~~~~~~~~~p~-------------------~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 697 (849)
+|++++|.+. .+|. .++.+++|+.|++..+... + .+. ..++|+.|++++|.+
T Consensus 157 ~L~l~~N~l~-~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~----~-l~~---~~~~L~~L~l~~n~l 227 (454)
T 1jl5_A 157 IIDVDNNSLK-KLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK----K-LPD---LPLSLESIVAGNNIL 227 (454)
T ss_dssp EEECCSSCCS-CCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS----S-CCC---CCTTCCEEECCSSCC
T ss_pred EEECCCCcCc-ccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCC----c-CCC---CcCcccEEECcCCcC
Confidence 5555555444 2333 3444444444443333111 0 000 012455555555544
Q ss_pred cccchHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCCCcCCCCCCCCCceEEEeeCCcccc
Q 003086 698 DEIEEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSPVWLNPASLPMLRYLSVCSGNLSKM 777 (849)
Q Consensus 698 ~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~l~~~ 777 (849)
..+. .+..+++|+.|++++|.+.+.. . .+++|+.|+++++....+|.+ +++|++|++++|.+..+
T Consensus 228 ~~lp--~~~~l~~L~~L~l~~N~l~~l~------~--~~~~L~~L~l~~N~l~~l~~~-----~~~L~~L~ls~N~l~~l 292 (454)
T 1jl5_A 228 EELP--ELQNLPFLTTIYADNNLLKTLP------D--LPPSLEALNVRDNYLTDLPEL-----PQSLTFLDVSENIFSGL 292 (454)
T ss_dssp SSCC--CCTTCTTCCEEECCSSCCSSCC------S--CCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCCSEE
T ss_pred Cccc--ccCCCCCCCEEECCCCcCCccc------c--cccccCEEECCCCcccccCcc-----cCcCCEEECcCCccCcc
Confidence 4332 2555666666666665443310 1 135666666665543333422 35666666666666553
Q ss_pred cccc-------ccCc------ccccccceeecccccccccccccccccccccceeeeccc---------ccCcccCcCCc
Q 003086 778 HDSF-------WGEN------NTVWKIEALLFESLSDLGIEWTRLQGVMPSLHIVNASWC---------PELDSFPIEDV 835 (849)
Q Consensus 778 ~~~~-------~~~~------~fp~~L~~L~l~~l~~L~l~~~~~~~~~p~L~~L~i~~c---------~~L~~l~l~~n 835 (849)
+... ...+ .+|.+|+.|++.+.. +. . ....+++|+.|++++| ++|+.|.+++|
T Consensus 293 ~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~-l~-~---lp~~~~~L~~L~L~~N~l~~lp~~l~~L~~L~L~~N 367 (454)
T 1jl5_A 293 SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK-LI-E---LPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYN 367 (454)
T ss_dssp SCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSC-CS-C---CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS
T ss_pred cCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCc-cc-c---ccccCCcCCEEECCCCccccccchhhhccEEECCCC
Confidence 2110 0000 011134444443321 21 1 1123577888887764 46777778888
Q ss_pred cccc
Q 003086 836 GFRG 839 (849)
Q Consensus 836 ~l~~ 839 (849)
.+++
T Consensus 368 ~l~~ 371 (454)
T 1jl5_A 368 PLRE 371 (454)
T ss_dssp CCSS
T ss_pred CCCc
Confidence 8887
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=1.1e-15 Score=160.24 Aligned_cols=201 Identities=19% Similarity=0.096 Sum_probs=102.6
Q ss_pred cCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCccc-CccccCCCCCcEEeeccccCCccCChhhhccc
Q 003086 555 SECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHL-PPSLKKLKNLQILDVSYCQNLKMLPSYVQSFI 633 (849)
Q Consensus 555 ~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~ 633 (849)
.++++|+.++++++.+. .+|..+. ++|++|+|++| .+..+ |..+..+++|++|++++|.. ..+|.. +.++
T Consensus 7 ~~l~~l~~l~~~~~~l~----~ip~~~~--~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~-~~l~ 77 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT----ALPPDLP--KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVD-GTLP 77 (290)
T ss_dssp ECSTTCCEEECTTSCCS----SCCSCCC--TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCC-CEEECC-SCCT
T ss_pred cccCCccEEECCCCCCC----cCCCCCC--CCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCcc-CcccCC-CCCC
Confidence 44455555555555554 3444332 45555555555 33332 33455555555555554432 222221 4455
Q ss_pred CCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCe
Q 003086 634 QLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQF 713 (849)
Q Consensus 634 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 713 (849)
+|++|++++|.+. .+|..+..+++|+.|++..+. .....+..+..+++|+.|++++|.+....+..+..+++|+.
T Consensus 78 ~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~----l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 152 (290)
T 1p9a_G 78 VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR----LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152 (290)
T ss_dssp TCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSC----CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cCCEEECCCCcCC-cCchhhccCCCCCEEECCCCc----CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCE
Confidence 5555555555544 445455555555555543332 12222234555556666666666555554455555666666
Q ss_pred EEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCCCcCCCCCCCCCceEEEeeCCcc
Q 003086 714 LSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSPVWLNPASLPMLRYLSVCSGNLS 775 (849)
Q Consensus 714 L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~l~ 775 (849)
|+|++|.++... ...+..+++|+.|+++++....+|..+ ..+++|+.|+|++|.+.
T Consensus 153 L~L~~N~l~~l~----~~~~~~l~~L~~L~L~~N~l~~ip~~~--~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 153 LSLANNNLTELP----AGLLNGLENLDTLLLQENSLYTIPKGF--FGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp EECTTSCCSCCC----TTTTTTCTTCCEEECCSSCCCCCCTTT--TTTCCCSEEECCSCCBC
T ss_pred EECCCCcCCccC----HHHhcCcCCCCEEECCCCcCCccChhh--cccccCCeEEeCCCCcc
Confidence 666655544321 112334556666666655444445555 55677888888877654
No 77
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.64 E-value=7.8e-18 Score=190.11 Aligned_cols=277 Identities=18% Similarity=0.046 Sum_probs=125.7
Q ss_pred cceEEecCCcccccc-ccccccccCCCCccceEeccCCCCCccc-Cccc-----cCCCCCcEEeeccccCCc----cCCh
Q 003086 559 YLRVLDISRSIFELP-LKGLLSQTGSLQHLSYLCLSNTHPLIHL-PPSL-----KKLKNLQILDVSYCQNLK----MLPS 627 (849)
Q Consensus 559 ~Lr~L~L~~~~~~~~-~~~~p~~~~~l~~Lr~L~L~~~~~~~~l-p~~i-----~~L~~L~~L~L~~~~~~~----~lp~ 627 (849)
+|++|+|++|.+... ...+|..+..+++|++|+|++| .+... +..+ ..+++|++|++++|.... .++.
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 164 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence 455555555554310 0123445555555555555555 23211 1111 123445555555554332 2234
Q ss_pred hhhcccCCcEeeccCCCCccccCcccc-----ccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccch
Q 003086 628 YVQSFIQLRALDVTHCGSLQYLPKGFG-----KLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEE 702 (849)
Q Consensus 628 ~i~~l~~L~~L~l~~~~~~~~~p~~i~-----~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 702 (849)
.+..+++|++|++++|.+....+..+. .+++|+.|++..+..........+..+..+++|+.|++++|.+.....
T Consensus 165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 244 (461)
T 1z7x_W 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 244 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence 444555666666665554322222221 133555555444421110000113334555666666666665433221
Q ss_pred -----HhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCC-----CCCcCCCCCCCCCceEEEeeC
Q 003086 703 -----DALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKT-----SPVWLNPASLPMLRYLSVCSG 772 (849)
Q Consensus 703 -----~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-----~p~~~~~~~l~~L~~L~L~~n 772 (849)
..+..+++|++|++++|.++..........+..+++|++|+++++.... +...+. ...++|++|++++|
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~-~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL-EPGCQLESLWVKSC 323 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHT-STTCCCCEEECTTS
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhc-cCCccceeeEcCCC
Confidence 1122456666666666654432111112223335566666666543210 000000 12356666666666
Q ss_pred CccccccccccCc--ccccccceeeccccccccccc--cccc----ccccccceeeeccc-----------------ccC
Q 003086 773 NLSKMHDSFWGEN--NTVWKIEALLFESLSDLGIEW--TRLQ----GVMPSLHIVNASWC-----------------PEL 827 (849)
Q Consensus 773 ~l~~~~~~~~~~~--~fp~~L~~L~l~~l~~L~l~~--~~~~----~~~p~L~~L~i~~c-----------------~~L 827 (849)
.++..+...+... .++ +|+.|++.++. +. .. .... ...+.|+.|++++| ++|
T Consensus 324 ~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~-i~-~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L 400 (461)
T 1z7x_W 324 SFTAACCSHFSSVLAQNR-FLLELQISNNR-LE-DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 400 (461)
T ss_dssp CCBGGGHHHHHHHHHHCS-SCCEEECCSSB-CH-HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred CCchHHHHHHHHHHhhCC-CccEEEccCCc-cc-cccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc
Confidence 6654332221110 234 66666666542 22 11 0111 12567888888877 356
Q ss_pred cccCcCCcccccc
Q 003086 828 DSFPIEDVGFRGG 840 (849)
Q Consensus 828 ~~l~l~~n~l~~~ 840 (849)
+.|.+++|.+++.
T Consensus 401 ~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 401 RELDLSNNCLGDA 413 (461)
T ss_dssp CEEECCSSSCCHH
T ss_pred cEEECCCCCCCHH
Confidence 7777888887764
No 78
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.64 E-value=2e-15 Score=177.74 Aligned_cols=139 Identities=19% Similarity=0.199 Sum_probs=98.6
Q ss_pred CCcceeEeeccCcc----hHhhhhccCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccc-cccC
Q 003086 508 GLNCRHLGVTSDVE----SKQLISNLKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLL-SQTG 582 (849)
Q Consensus 508 ~~~~r~lsi~~~~~----~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p-~~~~ 582 (849)
|..++++.+..+.- ......+++|++|.+.+. .+....+..|.++++|++|+|++|.+. .+| ..|+
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-----~i~~i~~~~f~~L~~L~~L~Ls~N~l~----~l~~~~f~ 121 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-----EIQTIEDGAYQSLSHLSTLILTGNPIQ----SLALGAFS 121 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-----CCCEECTTTTTTCTTCCEEECTTCCCC----EECGGGGT
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-----cCCCcChhHhcCCCCCCEEEccCCcCC----CCCHHHhc
Confidence 45677777765432 223456777888766553 333355667888888888888888886 444 4678
Q ss_pred CCCccceEeccCCCCCcccCc-cccCCCCCcEEeeccccCCc-cCChhhhcccCCcEeeccCCCCccccCcccccc
Q 003086 583 SLQHLSYLCLSNTHPLIHLPP-SLKKLKNLQILDVSYCQNLK-MLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKL 656 (849)
Q Consensus 583 ~l~~Lr~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l 656 (849)
++++|++|+|++| .+..+|. .++++++|++|++++|.... .+|..++++++|++|++++|.+.+..|..++.+
T Consensus 122 ~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L 196 (635)
T 4g8a_A 122 GLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 196 (635)
T ss_dssp TCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred CCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccch
Confidence 8888888888888 6777765 47888888899888776543 467788888888998888887765444444433
No 79
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.62 E-value=4.9e-18 Score=191.75 Aligned_cols=318 Identities=14% Similarity=0.048 Sum_probs=212.5
Q ss_pred cceeEeeccCcc----hHh-hhhccCccchhcccccccccchhhhhhhhhcCCCcceEEecCCcccccccccccccc-CC
Q 003086 510 NCRHLGVTSDVE----SKQ-LISNLKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQT-GS 583 (849)
Q Consensus 510 ~~r~lsi~~~~~----~~~-~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~-~~ 583 (849)
+.+++.+.+..- ... ...+++++++.+.+..... .....++..+..+++|++|+|++|.+.. ..+..+ ..
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~-~~~~~l~~~l~~~~~L~~L~Ls~n~l~~---~~~~~l~~~ 79 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTE-ARCKDISSALRVNPALAELNLRSNELGD---VGVHCVLQG 79 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCH-HHHHHHHHHHHTCTTCCEEECTTCCCHH---HHHHHHHHT
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCH-HHHHHHHHHHHhCCCcCEEeCCCCcCCh---HHHHHHHHH
Confidence 455666654332 122 4567889988877654321 1123567788999999999999999863 223222 23
Q ss_pred CC----ccceEeccCCCCCc-----ccCccccCCCCCcEEeeccccCCccCChhhhc-----ccCCcEeeccCCCCccc-
Q 003086 584 LQ----HLSYLCLSNTHPLI-----HLPPSLKKLKNLQILDVSYCQNLKMLPSYVQS-----FIQLRALDVTHCGSLQY- 648 (849)
Q Consensus 584 l~----~Lr~L~L~~~~~~~-----~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~-----l~~L~~L~l~~~~~~~~- 648 (849)
+. +|++|+|++| .+. .+|..+..+++|++|++++|......+..+.. .++|++|++++|.+...
T Consensus 80 l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HhhCCCceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 44 7999999999 565 56888999999999999988754443443332 56799999999988753
Q ss_pred ---cCccccccccccccCcccccCCCCCCCCCchhhh-----ccccccceeeeeccCcccc----hHhhcCCCCCCeEEE
Q 003086 649 ---LPKGFGKLLNLEVLLGFRPARSSQPEGCRISELK-----NLTRLRKLGLQLTCGDEIE----EDALVNLRELQFLSI 716 (849)
Q Consensus 649 ---~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~L 716 (849)
++..+..+++|++|++..+.. ....+..+. .+++|+.|++++|.++... +..+..+++|++|++
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n~i----~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 234 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNNDI----NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 234 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBC----HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHHhhCCCCCEEECcCCCc----chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEec
Confidence 355567789999998766532 111122232 3569999999999876542 456778899999999
Q ss_pred EeecCCCCchhhhcccc-CCCCCCCeEEEeccCCCC-----CCCcCCCCCCCCCceEEEeeCCccccccccccCc---cc
Q 003086 717 SCFDSHGSDLVAKIDEL-YPPEQLDELSLNFYPGKT-----SPVWLNPASLPMLRYLSVCSGNLSKMHDSFWGEN---NT 787 (849)
Q Consensus 717 ~~~~~~~~~~~~~l~~l-~~~~~L~~L~l~~~~~~~-----~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~---~f 787 (849)
++|.+...........+ .++++|++|+++++.... ++..+ ..+++|++|++++|.+...+...+... ..
T Consensus 235 s~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l--~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 312 (461)
T 1z7x_W 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL--RAKESLKELSLAGNELGDEGARLLCETLLEPG 312 (461)
T ss_dssp CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH--HHCTTCCEEECTTCCCHHHHHHHHHHHHTSTT
T ss_pred cCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHH--hhCCCcceEECCCCCCchHHHHHHHHHhccCC
Confidence 99876543221111222 357899999999874332 23333 568999999999998875544333221 23
Q ss_pred ccccceeecccccccccc---cccccccccccceeeecccc------------------cCcccCcCCccccc
Q 003086 788 VWKIEALLFESLSDLGIE---WTRLQGVMPSLHIVNASWCP------------------ELDSFPIEDVGFRG 839 (849)
Q Consensus 788 p~~L~~L~l~~l~~L~l~---~~~~~~~~p~L~~L~i~~c~------------------~L~~l~l~~n~l~~ 839 (849)
+ +|+.|.+.++.--... +...-..+++|+.|++++|. +|+.|.+++|.+++
T Consensus 313 ~-~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 313 C-QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp C-CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred c-cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence 5 8999999877522200 11112246889999998762 78888899998886
No 80
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.62 E-value=1.8e-14 Score=156.57 Aligned_cols=293 Identities=12% Similarity=0.058 Sum_probs=175.5
Q ss_pred CCCCccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCc-----cCHHHHH
Q 003086 158 YDHTLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQT-----FTEEQIM 232 (849)
Q Consensus 158 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-----~~~~~~~ 232 (849)
..+..|+||+++++.|.+ +.. +++.|+|++|+|||||++.+.+. ... ..+|+.+... .+...++
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~ 78 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYKDFL 78 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHHHHH
T ss_pred CCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHHHHH
Confidence 345679999999999999 654 48999999999999999999874 221 3578887643 3445555
Q ss_pred HHHHHHhcC-------------C-------C----------CCCCHHHHHHHHHHHhcCccEEEEEcCCCccC----HHH
Q 003086 233 RSMLRNLGD-------------A-------S----------AGDDRGELLRKINQYLLGKRYLIVMDDVWGED----LAW 278 (849)
Q Consensus 233 ~~i~~~l~~-------------~-------~----------~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----~~~ 278 (849)
..+.+.+.. . . .......+.+.+.+... ++++|||||++..+ ...
T Consensus 79 ~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~ 157 (357)
T 2fna_A 79 LELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNL 157 (357)
T ss_dssp HHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCC
T ss_pred HHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhH
Confidence 555443310 0 0 01234455555544322 48999999997632 122
Q ss_pred HHHHHhcCCCCCCceEEEEecchhhhhhc----------cccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhH
Q 003086 279 WRRIYEGLPKGKGSSIIITTRNGKVSQKM----------GVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEG 348 (849)
Q Consensus 279 ~~~l~~~l~~~~~s~ilvTtr~~~v~~~~----------~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~ 348 (849)
+..+........+.++|+|++........ .......+++.+|+.+|+.+++......... ....
T Consensus 158 ~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~---~~~~--- 231 (357)
T 2fna_A 158 LPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI---DFKD--- 231 (357)
T ss_dssp HHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC---CCCC---
T ss_pred HHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC---CCCc---
Confidence 33333222222377899999976532211 1011147889999999999999886422111 1111
Q ss_pred HHHHHHHhcCCchhHHHHHhhhhhcCCCChHHHHHHHHhhhhhhccCCchHHHHHH-Hhhh--CCChhhHHHHHHhccCC
Q 003086 349 VGKEIVEKCKGLPLAIKAVGGMMLYKPPTYNEWRRTADNFRDELAENDDSVMASLQ-LSYD--ELPPYLKSCFLSFSVYP 425 (849)
Q Consensus 349 ~~~~i~~~c~G~PLai~~~~~~l~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~-~sy~--~L~~~~k~cfl~~s~fp 425 (849)
. ..|++.|+|+|+++..++..+..... ...|... ..... ...+...+. +.++ .||+..+..+..+|.-
T Consensus 232 ~-~~i~~~t~G~P~~l~~~~~~~~~~~~-~~~~~~~---~~~~~---~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~g- 302 (357)
T 2fna_A 232 Y-EVVYEKIGGIPGWLTYFGFIYLDNKN-LDFAINQ---TLEYA---KKLILKEFENFLHGREIARKRYLNIMRTLSKC- 302 (357)
T ss_dssp H-HHHHHHHCSCHHHHHHHHHHHHHHCC-HHHHHHH---HHHHH---HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTC-
T ss_pred H-HHHHHHhCCCHHHHHHHHHHHccccc-hHHHHHH---HHHHH---HHHHHHHHHHHhhccccccHHHHHHHHHHHcC-
Confidence 1 78999999999999999877643322 3333221 11110 011111122 2211 6788899999999982
Q ss_pred CCccccHHHHHHHhH-hcCCCcCCCCCCHHHHHHHHHHhhhhccceEEeccccCCceeeee-ecHHHHHHH
Q 003086 426 EDCVIRKEQLVYWWI-GEGFVPQRNGRSSIEAGEDCFSGLTNRCLVEVVDKAYNKMISTCK-IHDMVRDLV 494 (849)
Q Consensus 426 ~~~~i~~~~li~~wi-a~g~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~-~Hdlv~~~~ 494 (849)
. +...+....- ..|. .........+++.|++.+++.... ..|+ .|++++++.
T Consensus 303 --~--~~~~l~~~~~~~~g~------~~~~~~~~~~L~~L~~~gli~~~~-------~~y~f~~~~~~~~l 356 (357)
T 2fna_A 303 --G--KWSDVKRALELEEGI------EISDSEIYNYLTQLTKHSWIIKEG-------EKYCPSEPLISLAF 356 (357)
T ss_dssp --B--CHHHHHHHHHHHHCS------CCCHHHHHHHHHHHHHTTSEEESS-------SCEEESSHHHHHHT
T ss_pred --C--CHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhCCCEEecC-------CEEEecCHHHHHhh
Confidence 1 4444432210 1121 012345778999999999998643 1354 588998864
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.62 E-value=6.5e-18 Score=185.83 Aligned_cols=224 Identities=15% Similarity=0.027 Sum_probs=143.4
Q ss_pred hhhhhhcCCCcceEEecCCccccccc-cccccccCCCCccceEeccCCCCCc----ccCccc-------cCCCCCcEEee
Q 003086 549 NLATKFSECRYLRVLDISRSIFELPL-KGLLSQTGSLQHLSYLCLSNTHPLI----HLPPSL-------KKLKNLQILDV 616 (849)
Q Consensus 549 ~~~~~~~~l~~Lr~L~L~~~~~~~~~-~~~p~~~~~l~~Lr~L~L~~~~~~~----~lp~~i-------~~L~~L~~L~L 616 (849)
.++..+..+++|+.|+|++|.+.... ..++..+..+++|++|+|++| .+. .+|..+ ..+++|++|+|
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 55677888999999999999987310 113455788999999999997 443 344444 68999999999
Q ss_pred ccccCCc----cCChhhhcccCCcEeeccCCCCccccCcc----cccc---------ccccccCcccccCCCCCCCCCc-
Q 003086 617 SYCQNLK----MLPSYVQSFIQLRALDVTHCGSLQYLPKG----FGKL---------LNLEVLLGFRPARSSQPEGCRI- 678 (849)
Q Consensus 617 ~~~~~~~----~lp~~i~~l~~L~~L~l~~~~~~~~~p~~----i~~l---------~~L~~L~~~~~~~~~~~~~~~~- 678 (849)
++|.... .+|..+.++++|++|++++|.+....+.. +..+ ++|++|++..+.... ...+
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~---~~~~~ 178 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN---GSMKE 178 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG---GGHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc---HHHHH
Confidence 9887665 47888999999999999999886433333 3333 677777765553211 1111
Q ss_pred --hhhhccccccceeeeeccCccc-----chHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCC
Q 003086 679 --SELKNLTRLRKLGLQLTCGDEI-----EEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKT 751 (849)
Q Consensus 679 --~~l~~l~~L~~L~l~~~~~~~~-----~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~ 751 (849)
..+..+++|+.|++++|.+... .+..+..+++|+.|+|++|.++..........+..+++|+.|+++++....
T Consensus 179 l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence 3456677788888877765522 112566777788888777755321111122334456667777776554221
Q ss_pred -----CCCcCCCCCCCCCceEEEeeCCccc
Q 003086 752 -----SPVWLNPASLPMLRYLSVCSGNLSK 776 (849)
Q Consensus 752 -----~p~~~~~~~l~~L~~L~L~~n~l~~ 776 (849)
+|.++..+.+++|++|+|++|.+..
T Consensus 259 ~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 259 RGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred hhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 1222211236667777777766654
No 82
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.61 E-value=1e-14 Score=168.14 Aligned_cols=249 Identities=18% Similarity=0.037 Sum_probs=181.7
Q ss_pred cCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCC
Q 003086 529 LKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKL 608 (849)
Q Consensus 529 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L 608 (849)
.+++++.+.+.. +. .+|..+. ++|++|+|++|.+. .+|. .+++|++|+|++| .+..+|. .+
T Consensus 40 ~~l~~L~ls~n~-----L~-~lp~~l~--~~L~~L~L~~N~l~----~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l 100 (622)
T 3g06_A 40 NGNAVLNVGESG-----LT-TLPDCLP--AHITTLVIPDNNLT----SLPA---LPPELRTLEVSGN-QLTSLPV---LP 100 (622)
T ss_dssp HCCCEEECCSSC-----CS-CCCSCCC--TTCSEEEECSCCCS----CCCC---CCTTCCEEEECSC-CCSCCCC---CC
T ss_pred CCCcEEEecCCC-----cC-ccChhhC--CCCcEEEecCCCCC----CCCC---cCCCCCEEEcCCC-cCCcCCC---CC
Confidence 456777665543 22 4455443 78999999999986 5665 5789999999999 7888887 78
Q ss_pred CCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhcccccc
Q 003086 609 KNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLR 688 (849)
Q Consensus 609 ~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~ 688 (849)
++|++|++++|. +..+|. .+++|+.|++++|.+. .+|.. +++|+.|++..+.... .+ ..+++|+
T Consensus 101 ~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~-----l~---~~~~~L~ 164 (622)
T 3g06_A 101 PGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-----LP---ALPSELC 164 (622)
T ss_dssp TTCCEEEECSCC-CCCCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSC-----CC---CCCTTCC
T ss_pred CCCCEEECcCCc-CCCCCC---CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCCC-----cC---CccCCCC
Confidence 899999999765 555666 6788999999999887 56664 4788888876663221 11 1356889
Q ss_pred ceeeeeccCcccchHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCCCcCCCCCCCCCceEE
Q 003086 689 KLGLQLTCGDEIEEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSPVWLNPASLPMLRYLS 768 (849)
Q Consensus 689 ~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~ 768 (849)
.|++++|.++.+. ..+++|+.|++++|.++... . .+++|+.|.++++....+| ..+++|++|+
T Consensus 165 ~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~------~--~~~~L~~L~L~~N~l~~l~-----~~~~~L~~L~ 227 (622)
T 3g06_A 165 KLWAYNNQLTSLP----MLPSGLQELSVSDNQLASLP------T--LPSELYKLWAYNNRLTSLP-----ALPSGLKELI 227 (622)
T ss_dssp EEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCC------C--CCTTCCEEECCSSCCSSCC-----CCCTTCCEEE
T ss_pred EEECCCCCCCCCc----ccCCCCcEEECCCCCCCCCC------C--ccchhhEEECcCCcccccC-----CCCCCCCEEE
Confidence 9999999877654 45789999999998765421 1 2478999999987666556 3458999999
Q ss_pred EeeCCccccccccccCcccccccceeecccccccccccccccccccccceeeecc------------cccCcccCcCCcc
Q 003086 769 VCSGNLSKMHDSFWGENNTVWKIEALLFESLSDLGIEWTRLQGVMPSLHIVNASW------------CPELDSFPIEDVG 836 (849)
Q Consensus 769 L~~n~l~~~~~~~~~~~~fp~~L~~L~l~~l~~L~l~~~~~~~~~p~L~~L~i~~------------c~~L~~l~l~~n~ 836 (849)
|++|.++.++ ..++ +|+.|.+.++ .+. .++. .+++|+.|++++ +++|+.|.+++|.
T Consensus 228 Ls~N~L~~lp------~~l~-~L~~L~Ls~N-~L~-~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 228 VSGNRLTSLP------VLPS-ELKELMVSGN-RLT-SLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCSSCCSCCC------CCCT-TCCEEECCSS-CCS-CCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCC
T ss_pred ccCCccCcCC------CCCC-cCcEEECCCC-CCC-cCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCC
Confidence 9999998866 2345 8999988875 243 3222 467777777654 4678888899999
Q ss_pred cccce
Q 003086 837 FRGGV 841 (849)
Q Consensus 837 l~~~~ 841 (849)
+++..
T Consensus 296 l~~~~ 300 (622)
T 3g06_A 296 LSERT 300 (622)
T ss_dssp CCHHH
T ss_pred CCCcC
Confidence 98743
No 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.61 E-value=5.6e-15 Score=153.58 Aligned_cols=179 Identities=22% Similarity=0.188 Sum_probs=142.6
Q ss_pred CcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCcc-ccCCCCCcEEeeccccCCccCChhhhcccCCc
Q 003086 558 RYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPS-LKKLKNLQILDVSYCQNLKMLPSYVQSFIQLR 636 (849)
Q Consensus 558 ~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 636 (849)
+.|+.|+|++|.+.. ..+..|..+++|++|+|++| .+..+|.. +..+++|++|++++|......+..+.++++|+
T Consensus 37 ~~l~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 112 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSS---LPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLA 112 (270)
T ss_dssp TTCSEEECCSSCCSC---CCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCC
T ss_pred CCCCEEECcCCCCCe---eCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCC
Confidence 579999999999872 33457899999999999999 77788765 47899999999998776555556678899999
Q ss_pred EeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCeEEE
Q 003086 637 ALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSI 716 (849)
Q Consensus 637 ~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L 716 (849)
+|++++|.+....+..++.+++|+.|++..+.. .......+..+++|+.|++++|.+..+.+..+..+++|+.|+|
T Consensus 113 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 188 (270)
T 2o6q_A 113 ELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL----QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKL 188 (270)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC----CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred EEECCCCccCeeCHHHhCcCcCCCEEECCCCcC----CccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEEC
Confidence 999999998866666788999999999766632 3333345788999999999999888877777888999999999
Q ss_pred EeecCCCCchhhhccccCCCCCCCeEEEeccC
Q 003086 717 SCFDSHGSDLVAKIDELYPPEQLDELSLNFYP 748 (849)
Q Consensus 717 ~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~ 748 (849)
++|.++... ...+..+++|+.|++.++.
T Consensus 189 ~~N~l~~~~----~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 189 DNNQLKRVP----EGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CSSCCSCCC----TTTTTTCTTCCEEECCSSC
T ss_pred CCCcCCcCC----HHHhccccCCCEEEecCCC
Confidence 998776431 1235567899999998764
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.60 E-value=1.3e-15 Score=155.29 Aligned_cols=197 Identities=14% Similarity=0.146 Sum_probs=119.0
Q ss_pred cceEEecCCcccccccccccc-ccCCCCccceEeccCCCCCcccCc-cccCCCCCcEEeeccccCCccCC-hhhhcccCC
Q 003086 559 YLRVLDISRSIFELPLKGLLS-QTGSLQHLSYLCLSNTHPLIHLPP-SLKKLKNLQILDVSYCQNLKMLP-SYVQSFIQL 635 (849)
Q Consensus 559 ~Lr~L~L~~~~~~~~~~~~p~-~~~~l~~Lr~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~~~~lp-~~i~~l~~L 635 (849)
.|++|+|++|.+. .+|. .|+.+++|++|+|++|..++.+|. .+..+++|++|++++|+.+..+| ..+.++++|
T Consensus 32 ~l~~L~l~~n~l~----~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L 107 (239)
T 2xwt_C 32 STQTLKLIETHLR----TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL 107 (239)
T ss_dssp TCCEEEEESCCCS----EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred cccEEEEeCCcce----EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence 7888888888876 3443 677888888888888833666665 57788888888888633344443 567778888
Q ss_pred cEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeec-cCcccchHhhcCCCCCC-e
Q 003086 636 RALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLT-CGDEIEEDALVNLRELQ-F 713 (849)
Q Consensus 636 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~l~~~~~L~-~ 713 (849)
++|++++|.+. .+|. ++.+++|+ .|+.|++++| .+..+.+..+..+++|+ .
T Consensus 108 ~~L~l~~n~l~-~lp~-~~~l~~L~-------------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~ 160 (239)
T 2xwt_C 108 KFLGIFNTGLK-MFPD-LTKVYSTD-------------------------IFFILEITDNPYMTSIPVNAFQGLCNETLT 160 (239)
T ss_dssp CEEEEEEECCC-SCCC-CTTCCBCC-------------------------SEEEEEEESCTTCCEECTTTTTTTBSSEEE
T ss_pred CEEeCCCCCCc-cccc-cccccccc-------------------------cccEEECCCCcchhhcCcccccchhcceeE
Confidence 88888887765 3443 33333333 1236666666 55555555566666777 7
Q ss_pred EEEEeecCCCCchhhhccccCCCCCCCeEEEecc--CCCCCCCcCCCCCC-CCCceEEEeeCCccccccccccCcccccc
Q 003086 714 LSISCFDSHGSDLVAKIDELYPPEQLDELSLNFY--PGKTSPVWLNPASL-PMLRYLSVCSGNLSKMHDSFWGENNTVWK 790 (849)
Q Consensus 714 L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~--~~~~~p~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~fp~~ 790 (849)
|++++|.+..... ..+. .++|+.|+++++ .....+..+ ..+ ++|+.|++++|.++.++.. .|+ +
T Consensus 161 L~l~~n~l~~i~~----~~~~-~~~L~~L~L~~n~~l~~i~~~~~--~~l~~~L~~L~l~~N~l~~l~~~-----~~~-~ 227 (239)
T 2xwt_C 161 LKLYNNGFTSVQG----YAFN-GTKLDAVYLNKNKYLTVIDKDAF--GGVYSGPSLLDVSQTSVTALPSK-----GLE-H 227 (239)
T ss_dssp EECCSCCCCEECT----TTTT-TCEEEEEECTTCTTCCEECTTTT--TTCSBCCSEEECTTCCCCCCCCT-----TCT-T
T ss_pred EEcCCCCCcccCH----hhcC-CCCCCEEEcCCCCCcccCCHHHh--hccccCCcEEECCCCccccCChh-----Hhc-c
Confidence 7776665432100 1111 145666666555 222223344 556 7788888877777655443 344 6
Q ss_pred cceeecccc
Q 003086 791 IEALLFESL 799 (849)
Q Consensus 791 L~~L~l~~l 799 (849)
|+.|.+.+.
T Consensus 228 L~~L~l~~~ 236 (239)
T 2xwt_C 228 LKELIARNT 236 (239)
T ss_dssp CSEEECTTC
T ss_pred CceeeccCc
Confidence 666665554
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.60 E-value=3.8e-15 Score=158.22 Aligned_cols=205 Identities=16% Similarity=0.069 Sum_probs=125.7
Q ss_pred CCCcceEEecCCcccccccccccccc--CCCCccceEeccCCCCCc-ccC----ccccCCCCCcEEeeccccCCccCChh
Q 003086 556 ECRYLRVLDISRSIFELPLKGLLSQT--GSLQHLSYLCLSNTHPLI-HLP----PSLKKLKNLQILDVSYCQNLKMLPSY 628 (849)
Q Consensus 556 ~l~~Lr~L~L~~~~~~~~~~~~p~~~--~~l~~Lr~L~L~~~~~~~-~lp----~~i~~L~~L~~L~L~~~~~~~~lp~~ 628 (849)
.++.|+.|+|++|.+.+ ..|..+ +.+++|++|+|++| .+. ..| ..+..+++|++|++++|......|..
T Consensus 89 ~~~~L~~L~l~~n~l~~---~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 164 (310)
T 4glp_A 89 AYSRLKELTLEDLKITG---TMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQ 164 (310)
T ss_dssp HHSCCCEEEEESCCCBS---CCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTS
T ss_pred ccCceeEEEeeCCEecc---chhhhhhhccCCCCCEEEeecc-cccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHH
Confidence 34568888888888763 556666 78888888888888 444 333 23456888888888877776666677
Q ss_pred hhcccCCcEeeccCCCCccc--c--CccccccccccccCcccccCCCCCCCCCch-hhhccccccceeeeeccCcccchH
Q 003086 629 VQSFIQLRALDVTHCGSLQY--L--PKGFGKLLNLEVLLGFRPARSSQPEGCRIS-ELKNLTRLRKLGLQLTCGDEIEED 703 (849)
Q Consensus 629 i~~l~~L~~L~l~~~~~~~~--~--p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~ 703 (849)
+.++++|++|++++|.+.+. + +..++.+++|++|++..+.... ....+. -++.+++|+.|++++|.+....+.
T Consensus 165 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~ 242 (310)
T 4glp_A 165 VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET--PTGVCAALAAAGVQPHSLDLSHNSLRATVNP 242 (310)
T ss_dssp CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC--HHHHHHHHHHHTCCCSSEECTTSCCCCCCCS
T ss_pred hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc--hHHHHHHHHhcCCCCCEEECCCCCCCccchh
Confidence 88888888888888876531 2 2224567777777765552110 000011 135667777777777766655443
Q ss_pred hhcCC---CCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCCCcCCCCCCCCCceEEEeeCCccc
Q 003086 704 ALVNL---RELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSPVWLNPASLPMLRYLSVCSGNLSK 776 (849)
Q Consensus 704 ~l~~~---~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~l~~ 776 (849)
.+..+ ++|++|+|++|.++.. + ..+ +++|+.|+++++.....|. + ..+++|+.|+|++|.+++
T Consensus 243 ~~~~~~~~~~L~~L~Ls~N~l~~l--p---~~~--~~~L~~L~Ls~N~l~~~~~-~--~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 243 SAPRCMWSSALNSLNLSFAGLEQV--P---KGL--PAKLRVLDLSSNRLNRAPQ-P--DELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSSCCCCTTCCCEECCSSCCCSC--C---SCC--CSCCSCEECCSCCCCSCCC-T--TSCCCCSCEECSSTTTSC
T ss_pred hHHhccCcCcCCEEECCCCCCCch--h---hhh--cCCCCEEECCCCcCCCCch-h--hhCCCccEEECcCCCCCC
Confidence 34443 5777777777665421 1 111 2566666666654443332 2 556666777776666553
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.60 E-value=3.9e-17 Score=179.58 Aligned_cols=252 Identities=15% Similarity=0.078 Sum_probs=175.0
Q ss_pred hhhhccCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccc-------cCCCCccceEeccCCC
Q 003086 524 QLISNLKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQ-------TGSLQHLSYLCLSNTH 596 (849)
Q Consensus 524 ~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~-------~~~l~~Lr~L~L~~~~ 596 (849)
....++++++|.+.+..... .....++..|..+++|++|+|++|.+..-...+|.. +..+++|++|+|++|
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~-~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n- 104 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGT-EAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN- 104 (386)
T ss_dssp HHHHCSCCCEEECTTSEECH-HHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-
T ss_pred HHhcCCCccEEECCCCCCCH-HHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-
Confidence 34567788888777653221 111235566889999999999997543111133433 478999999999999
Q ss_pred CCcc-----cCccccCCCCCcEEeeccccCCcc----CChhhhcc---------cCCcEeeccCCCCc-cccC---cccc
Q 003086 597 PLIH-----LPPSLKKLKNLQILDVSYCQNLKM----LPSYVQSF---------IQLRALDVTHCGSL-QYLP---KGFG 654 (849)
Q Consensus 597 ~~~~-----lp~~i~~L~~L~~L~L~~~~~~~~----lp~~i~~l---------~~L~~L~l~~~~~~-~~~p---~~i~ 654 (849)
.+.. +|..+..+++|++|+|++|..... ++..+..+ ++|++|++++|.+. ..+| ..+.
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence 5554 788889999999999998876433 33444455 89999999999886 3444 4577
Q ss_pred ccccccccCcccccCCCCCCCCCch-hhhccccccceeeeeccCc----ccchHhhcCCCCCCeEEEEeecCCCCchhhh
Q 003086 655 KLLNLEVLLGFRPARSSQPEGCRIS-ELKNLTRLRKLGLQLTCGD----EIEEDALVNLRELQFLSISCFDSHGSDLVAK 729 (849)
Q Consensus 655 ~l~~L~~L~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~ 729 (849)
.+++|++|++..+............ .+.++++|+.|++++|.++ ...+..+..+++|+.|+|++|.++.......
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 264 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence 8889999997766321100000222 6778999999999999875 3334678899999999999998765433222
Q ss_pred cccc--CCCCCCCeEEEeccCCCC-----CCCcCCCCCCCCCceEEEeeCCccccc
Q 003086 730 IDEL--YPPEQLDELSLNFYPGKT-----SPVWLNPASLPMLRYLSVCSGNLSKMH 778 (849)
Q Consensus 730 l~~l--~~~~~L~~L~l~~~~~~~-----~p~~~~~~~l~~L~~L~L~~n~l~~~~ 778 (849)
...+ .++++|+.|+++++.... +|.++. .++|+|++|+|++|.+....
T Consensus 265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~-~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID-EKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH-HHCTTCCEEECTTSBSCTTS
T ss_pred HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH-hcCCCceEEEccCCcCCcch
Confidence 3344 348899999999875433 343321 34799999999999988654
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.59 E-value=2.8e-15 Score=155.93 Aligned_cols=201 Identities=18% Similarity=0.160 Sum_probs=154.5
Q ss_pred hccCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCcc-c
Q 003086 527 SNLKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPS-L 605 (849)
Q Consensus 527 ~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~-i 605 (849)
...+++.+.+.+.... .+ ..+..+++|++|+|++|.+. .+ +.++.+++|++|+|++| .+..+|.. +
T Consensus 39 ~l~~L~~L~l~~~~i~------~~-~~l~~l~~L~~L~l~~n~l~----~~-~~l~~l~~L~~L~L~~n-~l~~~~~~~~ 105 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIK------SV-QGIQYLPNVRYLALGGNKLH----DI-SALKELTNLTYLILTGN-QLQSLPNGVF 105 (272)
T ss_dssp HHTTCCEEECTTSCCC------CC-TTGGGCTTCCEEECTTSCCC----CC-GGGTTCTTCCEEECTTS-CCCCCCTTTT
T ss_pred cccceeeeeeCCCCcc------cc-cccccCCCCcEEECCCCCCC----Cc-hhhcCCCCCCEEECCCC-ccCccChhHh
Confidence 4566777766554321 12 34788999999999999986 33 47899999999999999 67776654 6
Q ss_pred cCCCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccc
Q 003086 606 KKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLT 685 (849)
Q Consensus 606 ~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~ 685 (849)
+.+++|++|++++|......|..+.++++|++|++++|.+.+..+..++.+++|+.|++..+. ........++.++
T Consensus 106 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~~~~~~l~ 181 (272)
T 3rfs_A 106 DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ----LQSLPEGVFDKLT 181 (272)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC----CCCCCTTTTTTCT
T ss_pred cCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC----cCccCHHHhcCCc
Confidence 899999999999887666666668999999999999999885555567899999999977663 2333444578999
Q ss_pred cccceeeeeccCcccchHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEecc--CCCCCCCcC
Q 003086 686 RLRKLGLQLTCGDEIEEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFY--PGKTSPVWL 756 (849)
Q Consensus 686 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~--~~~~~p~~~ 756 (849)
+|+.|++++|.+....+..+..+++|+.|++++|.+.. .+++|+.|.+.++ .+.. |.++
T Consensus 182 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-----------~~~~l~~l~~~~n~~~g~i-p~~~ 242 (272)
T 3rfs_A 182 QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-----------TCPGIRYLSEWINKHSGVV-RNSA 242 (272)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-----------CTTTTHHHHHHHHHTGGGB-BCTT
T ss_pred cCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-----------cCcHHHHHHHHHHhCCCcc-cCcc
Confidence 99999999999888877778999999999999885432 3556776665532 2333 6565
No 88
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.58 E-value=8.7e-15 Score=153.50 Aligned_cols=177 Identities=21% Similarity=0.126 Sum_probs=138.7
Q ss_pred CcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcccCCcE
Q 003086 558 RYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRA 637 (849)
Q Consensus 558 ~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~ 637 (849)
+.|++|+|++|.+.. ..|..|..+++|++|+|++| .+..+|.. +.+++|++|++++|. +..+|..+..+++|++
T Consensus 31 ~~l~~L~L~~N~l~~---~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~ 104 (290)
T 1p9a_G 31 KDTTILHLSENLLYT---FSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTV 104 (290)
T ss_dssp TTCCEEECTTSCCSE---EEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCE
T ss_pred CCCCEEEcCCCcCCc---cCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEECCCCc-CCcCchhhccCCCCCE
Confidence 678999999999872 45677889999999999998 77777764 788999999999665 5578888888999999
Q ss_pred eeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCeEEEE
Q 003086 638 LDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSIS 717 (849)
Q Consensus 638 L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~ 717 (849)
|++++|.+....|..++.+++|+.|++..+.. .......+..+++|+.|++++|.++.+.+..+..+++|+.|+|+
T Consensus 105 L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l----~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 180 (290)
T 1p9a_G 105 LDVSFNRLTSLPLGALRGLGELQELYLKGNEL----KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180 (290)
T ss_dssp EECCSSCCCCCCSSTTTTCTTCCEEECTTSCC----CCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECC
T ss_pred EECCCCcCcccCHHHHcCCCCCCEEECCCCCC----CccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECC
Confidence 99999988855556788999999998766532 33334457788999999999998887777778889999999999
Q ss_pred eecCCCCchhhhccccCCCCCCCeEEEeccCC
Q 003086 718 CFDSHGSDLVAKIDELYPPEQLDELSLNFYPG 749 (849)
Q Consensus 718 ~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~ 749 (849)
+|.+... ...+...++|+.|.+.++..
T Consensus 181 ~N~l~~i-----p~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 181 ENSLYTI-----PKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp SSCCCCC-----CTTTTTTCCCSEEECCSCCB
T ss_pred CCcCCcc-----ChhhcccccCCeEEeCCCCc
Confidence 8877642 22344566888899887643
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.57 E-value=2.2e-15 Score=160.05 Aligned_cols=165 Identities=13% Similarity=0.000 Sum_probs=112.5
Q ss_pred CcceEEecCCcccccc-ccccccccCCCCccceEeccCCCCCcccCccc--cCCCCCcEEeeccccCCccCC----hhhh
Q 003086 558 RYLRVLDISRSIFELP-LKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSL--KKLKNLQILDVSYCQNLKMLP----SYVQ 630 (849)
Q Consensus 558 ~~Lr~L~L~~~~~~~~-~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i--~~L~~L~~L~L~~~~~~~~lp----~~i~ 630 (849)
..++.|.+.++.+... +..++ .+..+++|++|+|++|......|..+ ..+++|++|++++|......| ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGAL-RVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHH-HHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHH-HhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 3467778887776421 00111 12245679999999995555777777 899999999999888766555 4456
Q ss_pred cccCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccch---HhhcC
Q 003086 631 SFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEE---DALVN 707 (849)
Q Consensus 631 ~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~---~~l~~ 707 (849)
.+++|++|++++|.+....|..++.+++|++|++..+.............+..+++|+.|++++|.++.... ..+..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 799999999999999866667888999999998766631100000001123577888888888887754333 13467
Q ss_pred CCCCCeEEEEeecCCC
Q 003086 708 LRELQFLSISCFDSHG 723 (849)
Q Consensus 708 ~~~L~~L~L~~~~~~~ 723 (849)
+++|++|+|++|.+.+
T Consensus 223 l~~L~~L~Ls~N~l~~ 238 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRA 238 (310)
T ss_dssp TCCCSSEECTTSCCCC
T ss_pred CCCCCEEECCCCCCCc
Confidence 7888888888876544
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.57 E-value=3.7e-16 Score=168.34 Aligned_cols=202 Identities=17% Similarity=0.091 Sum_probs=103.6
Q ss_pred CcceEEecCCccccccccccccccCCCCccceEeccCCCCCc-c-cCccccCCCCCcEEeeccccCCccCChhhhcccCC
Q 003086 558 RYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLI-H-LPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQL 635 (849)
Q Consensus 558 ~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~-~-lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L 635 (849)
+.+++|++++|.+. ..+..+..+++|++|+|++| .+. . +|..+..+++|++|++++|......|..+..+++|
T Consensus 70 ~~l~~L~l~~n~l~----~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L 144 (336)
T 2ast_B 70 QGVIAFRCPRSFMD----QPLAEHFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNL 144 (336)
T ss_dssp TTCSEEECTTCEEC----SCCCSCCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTC
T ss_pred ccceEEEcCCcccc----ccchhhccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCC
Confidence 56667777776665 23334556677777777766 333 2 55556666777777777665555556666666777
Q ss_pred cEeeccCC-CCcc-ccCccccccccccccCcccccCCCCCCCC-Cchhhhccc-cccceeeeecc--Cc-ccchHhhcCC
Q 003086 636 RALDVTHC-GSLQ-YLPKGFGKLLNLEVLLGFRPARSSQPEGC-RISELKNLT-RLRKLGLQLTC--GD-EIEEDALVNL 708 (849)
Q Consensus 636 ~~L~l~~~-~~~~-~~p~~i~~l~~L~~L~~~~~~~~~~~~~~-~~~~l~~l~-~L~~L~l~~~~--~~-~~~~~~l~~~ 708 (849)
++|++++| .+.. .++..++.+++|++|++..+. ..... .+..+..++ +|+.|++++|. ++ ...+..+..+
T Consensus 145 ~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~---~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~ 221 (336)
T 2ast_B 145 VRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF---DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC 221 (336)
T ss_dssp SEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT---TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC
T ss_pred CEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC---CcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhC
Confidence 77777666 3332 234445555666666544431 00110 123355566 66666666652 22 1122344556
Q ss_pred CCCCeEEEEeec-CCCCchhhhccccCCCCCCCeEEEeccCCCCCCCcC-CCCCCCCCceEEEeeC
Q 003086 709 RELQFLSISCFD-SHGSDLVAKIDELYPPEQLDELSLNFYPGKTSPVWL-NPASLPMLRYLSVCSG 772 (849)
Q Consensus 709 ~~L~~L~L~~~~-~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~-~~~~l~~L~~L~L~~n 772 (849)
++|+.|++++|. ++.. .+..+..+++|+.|+++++.... +..+ ....+|+|+.|++++|
T Consensus 222 ~~L~~L~l~~~~~l~~~----~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 222 PNLVHLDLSDSVMLKND----CFQEFFQLNYLQHLSLSRCYDII-PETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TTCSEEECTTCTTCCGG----GGGGGGGCTTCCEEECTTCTTCC-GGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCEEeCCCCCcCCHH----HHHHHhCCCCCCEeeCCCCCCCC-HHHHHHHhcCCCCCEEeccCc
Confidence 666666666554 2211 11223334555555555543222 2100 0134555555555544
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.56 E-value=9.1e-16 Score=165.31 Aligned_cols=224 Identities=17% Similarity=0.046 Sum_probs=167.4
Q ss_pred CcceEEecCCccccccccccccccCCC--CccceEeccCCCCCcccCccccCCCCCcEEeeccccCCcc-CChhhhcccC
Q 003086 558 RYLRVLDISRSIFELPLKGLLSQTGSL--QHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKM-LPSYVQSFIQ 634 (849)
Q Consensus 558 ~~Lr~L~L~~~~~~~~~~~~p~~~~~l--~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~-lp~~i~~l~~ 634 (849)
..++.|+++++.+. +..++.+ +++++|++++| .+...+..+..+++|++|++++|..... +|..+..+++
T Consensus 47 ~~~~~l~l~~~~~~------~~~~~~~~~~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~ 119 (336)
T 2ast_B 47 SLWQTLDLTGKNLH------PDVTGRLLSQGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSK 119 (336)
T ss_dssp TTSSEEECTTCBCC------HHHHHHHHHTTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCC
T ss_pred hhheeeccccccCC------HHHHHhhhhccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCC
Confidence 45889999998875 3556666 89999999999 6666666688899999999998875544 8888999999
Q ss_pred CcEeeccCCCCccccCccccccccccccCcccccCCCCCCC-CCchhhhccccccceeeeec-cCccc-chHhhcCCC-C
Q 003086 635 LRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEG-CRISELKNLTRLRKLGLQLT-CGDEI-EEDALVNLR-E 710 (849)
Q Consensus 635 L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~-~~~~~-~~~~l~~~~-~ 710 (849)
|++|++++|.+....|..++.+++|++|++..+.. ... .....+.++++|+.|++++| .++.. .+..+..++ +
T Consensus 120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~---l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~ 196 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG---FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 196 (336)
T ss_dssp CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBS---CCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCC---CCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence 99999999988777788899999999999776621 121 12345788999999999999 76653 346678889 9
Q ss_pred CCeEEEEeec--CCCCchhhhccccCCCCCCCeEEEeccCC--CCCCCcCCCCCCCCCceEEEeeCC-ccccccccccCc
Q 003086 711 LQFLSISCFD--SHGSDLVAKIDELYPPEQLDELSLNFYPG--KTSPVWLNPASLPMLRYLSVCSGN-LSKMHDSFWGEN 785 (849)
Q Consensus 711 L~~L~L~~~~--~~~~~~~~~l~~l~~~~~L~~L~l~~~~~--~~~p~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~ 785 (849)
|++|++++|. ++..... ..+..+++|+.|+++++.. ...+..+ ..+++|++|++++|. +.......++
T Consensus 197 L~~L~l~~~~~~~~~~~l~---~~~~~~~~L~~L~l~~~~~l~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~l~-- 269 (336)
T 2ast_B 197 ITQLNLSGYRKNLQKSDLS---TLVRRCPNLVHLDLSDSVMLKNDCFQEF--FQLNYLQHLSLSRCYDIIPETLLELG-- 269 (336)
T ss_dssp CCEEECCSCGGGSCHHHHH---HHHHHCTTCSEEECTTCTTCCGGGGGGG--GGCTTCCEEECTTCTTCCGGGGGGGG--
T ss_pred CCEEEeCCCcccCCHHHHH---HHHhhCCCCCEEeCCCCCcCCHHHHHHH--hCCCCCCEeeCCCCCCCCHHHHHHHh--
Confidence 9999999883 3322122 2334578999999998763 2224444 788999999999884 3322211222
Q ss_pred ccccccceeecccc
Q 003086 786 NTVWKIEALLFESL 799 (849)
Q Consensus 786 ~fp~~L~~L~l~~l 799 (849)
.+| +|+.|.+.++
T Consensus 270 ~~~-~L~~L~l~~~ 282 (336)
T 2ast_B 270 EIP-TLKTLQVFGI 282 (336)
T ss_dssp GCT-TCCEEECTTS
T ss_pred cCC-CCCEEeccCc
Confidence 477 8999999887
No 92
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.56 E-value=2.6e-16 Score=171.28 Aligned_cols=229 Identities=13% Similarity=0.003 Sum_probs=155.8
Q ss_pred cchhhhhhhhhcCCCcceEEecCCccccccccccc----cccCCCC-ccceEeccCCCCCccc-CccccCC-----CCCc
Q 003086 544 NNIASNLATKFSECRYLRVLDISRSIFELPLKGLL----SQTGSLQ-HLSYLCLSNTHPLIHL-PPSLKKL-----KNLQ 612 (849)
Q Consensus 544 ~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p----~~~~~l~-~Lr~L~L~~~~~~~~l-p~~i~~L-----~~L~ 612 (849)
+++.+.+|..+...++|++|+|++|.+.. ..+ ..+..++ +|++|+|++| .+... +..+..+ ++|+
T Consensus 8 n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~---~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 8 HPGSNPVEEFTSIPHGVTSLDLSLNNLYS---ISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp CTTCCHHHHHHTSCTTCCEEECTTSCGGG---SCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccchHHHHHHHhCCCCceEEEccCCCCCh---HHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCcc
Confidence 44555677777777789999999999873 233 6677888 9999999999 66554 4455554 8999
Q ss_pred EEeeccccCCccCChhhhc----c-cCCcEeeccCCCCccccCccc----cc-cccccccCcccccCCCCCCCCCchhhh
Q 003086 613 ILDVSYCQNLKMLPSYVQS----F-IQLRALDVTHCGSLQYLPKGF----GK-LLNLEVLLGFRPARSSQPEGCRISELK 682 (849)
Q Consensus 613 ~L~L~~~~~~~~lp~~i~~----l-~~L~~L~l~~~~~~~~~p~~i----~~-l~~L~~L~~~~~~~~~~~~~~~~~~l~ 682 (849)
+|+|++|......+..+.. + ++|++|++++|.+....+..+ .. .++|++|++..+.............+.
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 163 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILA 163 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHh
Confidence 9999988866666665544 4 899999999999875444333 33 368999987766432211112233445
Q ss_pred ccc-cccceeeeeccCcccch----HhhcCC-CCCCeEEEEeecCCCCchhhhccccCC-CCCCCeEEEeccCCCCCC--
Q 003086 683 NLT-RLRKLGLQLTCGDEIEE----DALVNL-RELQFLSISCFDSHGSDLVAKIDELYP-PEQLDELSLNFYPGKTSP-- 753 (849)
Q Consensus 683 ~l~-~L~~L~l~~~~~~~~~~----~~l~~~-~~L~~L~L~~~~~~~~~~~~~l~~l~~-~~~L~~L~l~~~~~~~~p-- 753 (849)
.++ +|+.|++++|.++.... ..+..+ ++|+.|+|++|.+...........+.. +++|+.|+++++.....+
T Consensus 164 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 243 (362)
T 3goz_A 164 AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE 243 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHH
T ss_pred cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHH
Confidence 565 89999999998766555 344555 599999999987665332222223333 458999999876543321
Q ss_pred ---CcCCCCCCCCCceEEEeeCCccccc
Q 003086 754 ---VWLNPASLPMLRYLSVCSGNLSKMH 778 (849)
Q Consensus 754 ---~~~~~~~l~~L~~L~L~~n~l~~~~ 778 (849)
.++ ..+++|+.|+|++|.+..+.
T Consensus 244 ~l~~~~--~~l~~L~~L~L~~n~l~~i~ 269 (362)
T 3goz_A 244 NLKLLK--DSLKHLQTVYLDYDIVKNMS 269 (362)
T ss_dssp HHHHTT--TTTTTCSEEEEEHHHHTTCC
T ss_pred HHHHHH--hcCCCccEEEeccCCccccC
Confidence 122 66788999999988755443
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.55 E-value=6.1e-15 Score=150.26 Aligned_cols=177 Identities=18% Similarity=0.170 Sum_probs=128.4
Q ss_pred cCccchhcccccccccchhhhhhhhhcCCCcceEEecCCcc-ccccccccc-cccCCCCccceEeccC-CCCCcccC-cc
Q 003086 529 LKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSI-FELPLKGLL-SQTGSLQHLSYLCLSN-THPLIHLP-PS 604 (849)
Q Consensus 529 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-~~~~~~~~p-~~~~~l~~Lr~L~L~~-~~~~~~lp-~~ 604 (849)
.+++.|.+.+. .+....+..|.++++|++|++++|. +. .++ ..|..+++|++|+|++ | .+..+| ..
T Consensus 31 ~~l~~L~l~~n-----~l~~i~~~~~~~l~~L~~L~l~~n~~l~----~i~~~~f~~l~~L~~L~l~~~n-~l~~i~~~~ 100 (239)
T 2xwt_C 31 PSTQTLKLIET-----HLRTIPSHAFSNLPNISRIYVSIDVTLQ----QLESHSFYNLSKVTHIEIRNTR-NLTYIDPDA 100 (239)
T ss_dssp TTCCEEEEESC-----CCSEECTTTTTTCTTCCEEEEECCSSCC----EECTTTEESCTTCCEEEEEEET-TCCEECTTS
T ss_pred CcccEEEEeCC-----cceEECHHHccCCCCCcEEeCCCCCCcc----eeCHhHcCCCcCCcEEECCCCC-CeeEcCHHH
Confidence 35666655443 3444555689999999999999997 76 444 4789999999999998 7 777777 46
Q ss_pred ccCCCCCcEEeeccccCCccCChhhhcccCCc---EeeccCC-CCccccCcccccccccc-ccCcccccCCCCCCCCCch
Q 003086 605 LKKLKNLQILDVSYCQNLKMLPSYVQSFIQLR---ALDVTHC-GSLQYLPKGFGKLLNLE-VLLGFRPARSSQPEGCRIS 679 (849)
Q Consensus 605 i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~---~L~l~~~-~~~~~~p~~i~~l~~L~-~L~~~~~~~~~~~~~~~~~ 679 (849)
+..+++|++|++++|. +..+|. +..+++|+ +|++++| .+....+..++.+++|+ .|++..+.. ......
T Consensus 101 f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l----~~i~~~ 174 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF----TSVQGY 174 (239)
T ss_dssp EECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC----CEECTT
T ss_pred hCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC----cccCHh
Confidence 8899999999999776 445787 88888888 9999999 77644444578888888 887655422 211112
Q ss_pred hhhccccccceeeeecc-CcccchHhhcCC-CCCCeEEEEeecCC
Q 003086 680 ELKNLTRLRKLGLQLTC-GDEIEEDALVNL-RELQFLSISCFDSH 722 (849)
Q Consensus 680 ~l~~l~~L~~L~l~~~~-~~~~~~~~l~~~-~~L~~L~L~~~~~~ 722 (849)
.+.. ++|+.|++++|. ++.+.+..+..+ ++|+.|++++|.++
T Consensus 175 ~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 175 AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred hcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 2333 678888888773 666666667777 77777777766544
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.55 E-value=2.1e-14 Score=152.12 Aligned_cols=193 Identities=20% Similarity=0.205 Sum_probs=156.0
Q ss_pred ccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCccccccccc
Q 003086 580 QTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNL 659 (849)
Q Consensus 580 ~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L 659 (849)
.+..+++|++|++++| .+..+| .+..+++|++|++++|. +..+|. +..+++|++|++++|.+. .++ .++.+++|
T Consensus 36 ~~~~l~~L~~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L 109 (308)
T 1h6u_A 36 TQADLDGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNPLK-NVS-AIAGLQSI 109 (308)
T ss_dssp CHHHHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCCCS-CCG-GGTTCTTC
T ss_pred cHHHcCCcCEEEeeCC-CccCch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCcCC-Cch-hhcCCCCC
Confidence 3557899999999999 888888 58999999999999775 445665 999999999999999986 444 68999999
Q ss_pred cccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCC
Q 003086 660 EVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQL 739 (849)
Q Consensus 660 ~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L 739 (849)
+.|++..+.. .. ...+..+++|+.|++++|.+....+ +..+++|+.|++++|.+... ..+..+++|
T Consensus 110 ~~L~l~~n~l----~~--~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~------~~l~~l~~L 175 (308)
T 1h6u_A 110 KTLDLTSTQI----TD--VTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL------TPLANLSKL 175 (308)
T ss_dssp CEEECTTSCC----CC--CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC------GGGTTCTTC
T ss_pred CEEECCCCCC----CC--chhhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC------hhhcCCCCC
Confidence 9999777642 22 2358899999999999998876654 88999999999999977653 226678999
Q ss_pred CeEEEeccCCCCCCCcCCCCCCCCCceEEEeeCCccccccccccCcccccccceeeccccc
Q 003086 740 DELSLNFYPGKTSPVWLNPASLPMLRYLSVCSGNLSKMHDSFWGENNTVWKIEALLFESLS 800 (849)
Q Consensus 740 ~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~fp~~L~~L~l~~l~ 800 (849)
+.|+++++.....+. + ..+++|++|+|++|.+..++. + ..+| +|+.|.+.+.+
T Consensus 176 ~~L~l~~n~l~~~~~-l--~~l~~L~~L~L~~N~l~~~~~--l--~~l~-~L~~L~l~~N~ 228 (308)
T 1h6u_A 176 TTLKADDNKISDISP-L--ASLPNLIEVHLKNNQISDVSP--L--ANTS-NLFIVTLTNQT 228 (308)
T ss_dssp CEEECCSSCCCCCGG-G--GGCTTCCEEECTTSCCCBCGG--G--TTCT-TCCEEEEEEEE
T ss_pred CEEECCCCccCcChh-h--cCCCCCCEEEccCCccCcccc--c--cCCC-CCCEEEccCCe
Confidence 999999876555443 3 789999999999999987763 2 2466 88888888654
No 95
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.55 E-value=3e-12 Score=140.66 Aligned_cols=321 Identities=13% Similarity=0.032 Sum_probs=202.3
Q ss_pred CCccccccccHHHHHHHHhcc----CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhccc-CceEEEEeCCccCHHHHHHH
Q 003086 160 HTLVVGLEGDTRKIKDWLFEA----EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWF-ERRMWVSVSQTFTEEQIMRS 234 (849)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~ 234 (849)
+..++||+.+++++.+++... ....+.+.|+|++|+||||||+.+++. ..... ..++|++++...+...++..
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 367999999999999988762 212348999999999999999999873 32221 24678888888888999999
Q ss_pred HHHHhcCCCC--CCCHHHHHHHHHHHhc--CccEEEEEcCCCccCHHHHHHHHhcCCC--C---CCceEEEEecchhhhh
Q 003086 235 MLRNLGDASA--GDDRGELLRKINQYLL--GKRYLIVMDDVWGEDLAWWRRIYEGLPK--G---KGSSIIITTRNGKVSQ 305 (849)
Q Consensus 235 i~~~l~~~~~--~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~~~~~l~~~l~~--~---~~s~ilvTtr~~~v~~ 305 (849)
++..++...+ +.+...+.+.+.+.+. +++.+|||||++..+......+...+.. . .+..||+||+......
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 9999876543 3356677777776663 5688999999988666777777776643 1 3667888887654333
Q ss_pred hcccc-----ccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhc---------CCchhHHHHHhhhh
Q 003086 306 KMGVK-----KARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKC---------KGLPLAIKAVGGMM 371 (849)
Q Consensus 306 ~~~~~-----~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c---------~G~PLai~~~~~~l 371 (849)
..... ....+.+.+++.++..+++...+..... ...-.++..+.|++.+ +|.|..+..+....
T Consensus 174 ~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 174 NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA---EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC---TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC---CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 22110 1126899999999999999988643111 1122356778899999 78886544443222
Q ss_pred h------c-CCCChHHHHHHHHhhhhhhccCCchHHHHHHHhhhCCChhhHHHHHHhccCC---CCccccHHHHHHHhHh
Q 003086 372 L------Y-KPPTYNEWRRTADNFRDELAENDDSVMASLQLSYDELPPYLKSCFLSFSVYP---EDCVIRKEQLVYWWIG 441 (849)
Q Consensus 372 ~------~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~s~fp---~~~~i~~~~li~~wia 441 (849)
. . ..-+.+....+...... . .+.-.+..||.+.+.++..++.+. .+..+....+...+..
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~~~~~------~----~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~ 320 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSKEVLF------G----ISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKI 320 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHSC------C----CCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHHhh------h----hHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHH
Confidence 1 1 11123333333332211 1 123346778888888888777654 2214555666554433
Q ss_pred ----cCCCcCCCCCCHHHHHHHHHHhhhhccceEEecc----ccCCceeee----eecHHHHHHHHHHhhc
Q 003086 442 ----EGFVPQRNGRSSIEAGEDCFSGLTNRCLVEVVDK----AYNKMISTC----KIHDMVRDLVIRVAEE 500 (849)
Q Consensus 442 ----~g~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~----~~~~~~~~~----~~Hdlv~~~~~~~~~~ 500 (849)
.|.. .-.......++++|...+++..... ...|+...+ ..|+++..+...+..+
T Consensus 321 ~~~~~~~~-----~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~ 386 (389)
T 1fnn_A 321 VCEEYGER-----PRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKE 386 (389)
T ss_dssp HHHHTTCC-----CCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHHHcCCC-----CCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHH
Confidence 1211 1123557789999999999998653 112222222 2556666665554443
No 96
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.55 E-value=3.1e-14 Score=167.52 Aligned_cols=114 Identities=28% Similarity=0.217 Sum_probs=60.7
Q ss_pred hhhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCc-cccCCCCCcEEeeccccCCccCCh
Q 003086 549 NLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPP-SLKKLKNLQILDVSYCQNLKMLPS 627 (849)
Q Consensus 549 ~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~ 627 (849)
..+..|.++++|++|+|++|.+.. ..|.+|++|++|++|+|++| .+..+|. .|.++++|++|++++|......+.
T Consensus 67 l~~~~f~~l~~L~~L~Ls~N~i~~---i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~ 142 (635)
T 4g8a_A 67 LGSYSFFSFPELQVLDLSRCEIQT---IEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENF 142 (635)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCE---ECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEECTTSCCCCSTTC
T ss_pred CCHHHHhCCCCCCEEECCCCcCCC---cChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEECCCCcCCCCChh
Confidence 334455666666666666665541 22334556666666666666 4555553 345566666666665543333333
Q ss_pred hhhcccCCcEeeccCCCCcc-ccCccccccccccccCccc
Q 003086 628 YVQSFIQLRALDVTHCGSLQ-YLPKGFGKLLNLEVLLGFR 666 (849)
Q Consensus 628 ~i~~l~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~~~~ 666 (849)
.|+++++|++|++++|.+.. ..|..++.+++|++|++..
T Consensus 143 ~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 143 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 182 (635)
T ss_dssp CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred hhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC
Confidence 45566666666666655542 2344455556666665443
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.53 E-value=5.5e-14 Score=144.29 Aligned_cols=151 Identities=21% Similarity=0.191 Sum_probs=79.9
Q ss_pred cceEEecCCccccccccccccccCCCCccceEeccCCCCCcccC-ccccCCCCCcEEeeccccCCccCChhhhcccCCcE
Q 003086 559 YLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLP-PSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRA 637 (849)
Q Consensus 559 ~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~ 637 (849)
..+.++++++.+. .+|..+. .+|++|+|++| .+..++ ..+..+++|++|++++|......|..+.++++|++
T Consensus 15 ~~~~l~~~~~~l~----~~p~~~~--~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 87 (251)
T 3m19_A 15 GKKEVDCQGKSLD----SVPSGIP--ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGT 87 (251)
T ss_dssp GGTEEECTTCCCS----SCCSCCC--TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCeEEecCCCCcc----ccCCCCC--CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCE
Confidence 3456666666654 4555443 46666666666 444333 34666666666666665555544555666666666
Q ss_pred eeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCeEEEE
Q 003086 638 LDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSIS 717 (849)
Q Consensus 638 L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~ 717 (849)
|++++|.+....+..++.+++|+.|++..+.. .......+..+++|+.|++++|.+..+.+..+..+++|+.|+|+
T Consensus 88 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQL----KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163 (251)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCC----CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EECCCCcccccChhHhcccCCCCEEEcCCCcC----CCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECC
Confidence 66666665533333445555555555433321 12222234455555555555555544444445555555555555
Q ss_pred eec
Q 003086 718 CFD 720 (849)
Q Consensus 718 ~~~ 720 (849)
+|.
T Consensus 164 ~N~ 166 (251)
T 3m19_A 164 TNQ 166 (251)
T ss_dssp SSC
T ss_pred CCc
Confidence 443
No 98
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.53 E-value=1.1e-12 Score=143.93 Aligned_cols=296 Identities=14% Similarity=0.058 Sum_probs=187.5
Q ss_pred CCCccccccccHHHHHHHHhcc--CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcc------cCceEEEEeCCccCHHH
Q 003086 159 DHTLVVGLEGDTRKIKDWLFEA--EEGILAIGVVGMGGLGKTTIAQKVFNDREIENW------FERRMWVSVSQTFTEEQ 230 (849)
Q Consensus 159 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~------f~~~~wv~~s~~~~~~~ 230 (849)
.+..++||+.+++++.+++... ....+.+.|+|++|+||||||+.+++. .... -...+|+++....+...
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~ 94 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPYR 94 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHHH
Confidence 3467999999999999998653 334568899999999999999999874 2221 12367888888889999
Q ss_pred HHHHHHHHhcCCCC--CCCHHHHHHHHHHHh--cCccEEEEEcCCCccCH-----HHHHHHHhcCCC---CCCceEEEEe
Q 003086 231 IMRSMLRNLGDASA--GDDRGELLRKINQYL--LGKRYLIVMDDVWGEDL-----AWWRRIYEGLPK---GKGSSIIITT 298 (849)
Q Consensus 231 ~~~~i~~~l~~~~~--~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~~-----~~~~~l~~~l~~---~~~s~ilvTt 298 (849)
++..++..++...+ +.+..++...+.+.+ .+++.+|||||++.... .....+...... ..+..+|+||
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t 174 (387)
T 2v1u_A 95 VASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGIT 174 (387)
T ss_dssp HHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEEC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEE
Confidence 99999999976544 345667777777777 45689999999987321 222222322222 2366788888
Q ss_pred cchhhhh----hccc-cccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcC---CchhHH-HHHhh
Q 003086 299 RNGKVSQ----KMGV-KKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCK---GLPLAI-KAVGG 369 (849)
Q Consensus 299 r~~~v~~----~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~---G~PLai-~~~~~ 369 (849)
+...... .... .....+.+.+++.++..+++.+.+.....+ ....++..+.+++.++ |.|..+ ..+..
T Consensus 175 ~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~ 251 (387)
T 2v1u_A 175 NSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNP---GVLDPDVVPLCAALAAREHGDARRALDLLRV 251 (387)
T ss_dssp SCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCT---TTBCSSHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccC---CCCCHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 7653211 1111 111378999999999999999886421111 1122345667888887 999433 32222
Q ss_pred hh--h---c-CCCChHHHHHHHHhhhhhhccCCchHHHHHHHhhhCCChhhHHHHHHhc-cCCCCccccHHHHHHHhH--
Q 003086 370 MM--L---Y-KPPTYNEWRRTADNFRDELAENDDSVMASLQLSYDELPPYLKSCFLSFS-VYPEDCVIRKEQLVYWWI-- 440 (849)
Q Consensus 370 ~l--~---~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~s-~fp~~~~i~~~~li~~wi-- 440 (849)
+. . . ..-+.+++..++..... ..+.-++..||.+.+..+..++ ++.....+....+.+...
T Consensus 252 a~~~a~~~~~~~i~~~~v~~a~~~~~~----------~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~ 321 (387)
T 2v1u_A 252 AGEIAERRREERVRREHVYSARAEIER----------DRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKEL 321 (387)
T ss_dssp HHHHHHHTTCSCBCHHHHHHHHHHHHH----------HHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHHhh----------chHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 21 1 1 11246666666655422 2356678899998887777666 443222444454333321
Q ss_pred --hcCCCcCCCCCCHHHHHHHHHHhhhhccceEEec
Q 003086 441 --GEGFVPQRNGRSSIEAGEDCFSGLTNRCLVEVVD 474 (849)
Q Consensus 441 --a~g~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~ 474 (849)
..| . .......+..+++.|...|+++...
T Consensus 322 ~~~~~-~----~~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 322 TSTLG-L----EHVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHTT-C----CCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhcC-C----CCCCHHHHHHHHHHHHhCCCeEEEe
Confidence 122 1 1223466788999999999999864
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.53 E-value=8.6e-16 Score=167.09 Aligned_cols=239 Identities=11% Similarity=0.028 Sum_probs=162.6
Q ss_pred ccCccchhcccccccccchhhhhhhhhcCCC-cceEEecCCccccccccccccccCCC-----CccceEeccCCCCCccc
Q 003086 528 NLKLRALMSTTKTAEVNNIASNLATKFSECR-YLRVLDISRSIFELPLKGLLSQTGSL-----QHLSYLCLSNTHPLIHL 601 (849)
Q Consensus 528 ~~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~~~~~~~~~p~~~~~l-----~~Lr~L~L~~~~~~~~l 601 (849)
..+++.|.+.+....... ...+...|.+++ +|++|+|++|.+.. ..+..+..+ ++|++|+|++| .+...
T Consensus 21 ~~~L~~L~Ls~n~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~N~l~~---~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~ 95 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSIS-TVELIQAFANTPASVTSLNLSGNSLGF---KNSDELVQILAAIPANVTSLNLSGN-FLSYK 95 (362)
T ss_dssp CTTCCEEECTTSCGGGSC-HHHHHHHHHTCCTTCCEEECCSSCGGG---SCHHHHHHHHHTSCTTCCEEECCSS-CGGGS
T ss_pred CCCceEEEccCCCCChHH-HHHHHHHHHhCCCceeEEECcCCCCCH---HHHHHHHHHHhccCCCccEEECcCC-cCChH
Confidence 344888877665322111 112236788888 89999999999873 445556554 99999999999 66654
Q ss_pred Cc-c----ccCC-CCCcEEeeccccCCccCChhhhc-----ccCCcEeeccCCCCcc----ccCccccccc-cccccCcc
Q 003086 602 PP-S----LKKL-KNLQILDVSYCQNLKMLPSYVQS-----FIQLRALDVTHCGSLQ----YLPKGFGKLL-NLEVLLGF 665 (849)
Q Consensus 602 p~-~----i~~L-~~L~~L~L~~~~~~~~lp~~i~~-----l~~L~~L~l~~~~~~~----~~p~~i~~l~-~L~~L~~~ 665 (849)
+. . +..+ ++|++|++++|......+..+.. .++|++|++++|.+.. .++..+..+. +|++|++.
T Consensus 96 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 175 (362)
T 3goz_A 96 SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLR 175 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred HHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeec
Confidence 43 2 4455 89999999988865555544443 3699999999998764 2333445555 89999877
Q ss_pred cccCCCCCCCCCch----hhhcc-ccccceeeeeccCcccch----HhhcC-CCCCCeEEEEeecCCCCchhhhccccCC
Q 003086 666 RPARSSQPEGCRIS----ELKNL-TRLRKLGLQLTCGDEIEE----DALVN-LRELQFLSISCFDSHGSDLVAKIDELYP 735 (849)
Q Consensus 666 ~~~~~~~~~~~~~~----~l~~l-~~L~~L~l~~~~~~~~~~----~~l~~-~~~L~~L~L~~~~~~~~~~~~~l~~l~~ 735 (849)
.+.. ....+. .+..+ ++|+.|++++|.+..... ..+.. .++|+.|+|++|.++..........+..
T Consensus 176 ~n~l----~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~ 251 (362)
T 3goz_A 176 GNNL----ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDS 251 (362)
T ss_dssp TSCG----GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTT
T ss_pred CCCC----chhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhc
Confidence 6643 223333 34455 599999999998766332 34444 4699999999998876544333344567
Q ss_pred CCCCCeEEEeccCCCC--------CCCcCCCCCCCCCceEEEeeCCcccc
Q 003086 736 PEQLDELSLNFYPGKT--------SPVWLNPASLPMLRYLSVCSGNLSKM 777 (849)
Q Consensus 736 ~~~L~~L~l~~~~~~~--------~p~~~~~~~l~~L~~L~L~~n~l~~~ 777 (849)
+++|+.|+++++.... .+..+ ..+++|+.|++++|.+...
T Consensus 252 l~~L~~L~L~~n~l~~i~~~~~~~l~~~~--~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 252 LKHLQTVYLDYDIVKNMSKEQCKALGAAF--PNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp TTTCSEEEEEHHHHTTCCHHHHHHHHTTS--TTCCEEEEECTTSCBCCGG
T ss_pred CCCccEEEeccCCccccCHHHHHHHHHHh--ccCCceEEEecCCCcCCCc
Confidence 8899999999864111 11223 6788899999999987654
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.52 E-value=1.1e-14 Score=143.36 Aligned_cols=153 Identities=14% Similarity=0.125 Sum_probs=112.0
Q ss_pred cCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcccC
Q 003086 555 SECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQ 634 (849)
Q Consensus 555 ~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~ 634 (849)
..+++|+.|++++|.+. .+| .+..+++|++|++++| .+..+| .+..+++|++|++++|......|..+..+++
T Consensus 41 ~~l~~L~~L~l~~n~i~----~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 113 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT----DLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTS 113 (197)
T ss_dssp HHHHTCCEEEEESSCCS----CCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTT
T ss_pred hhcCCccEEeccCCCcc----ChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCC
Confidence 45677888888888876 455 6788888888888888 666654 5788888888888877766667777888888
Q ss_pred CcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCeE
Q 003086 635 LRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFL 714 (849)
Q Consensus 635 L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 714 (849)
|++|++++|.+....|..++.+++|+.|++..+.. ...+..+..+++|+.|++++|.+.... .+..+++|+.|
T Consensus 114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~-----i~~~~~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L 186 (197)
T 4ezg_A 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA-----ITDIMPLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQL 186 (197)
T ss_dssp CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTB-----CCCCGGGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEE
T ss_pred CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCC-----ccccHhhcCCCCCCEEECCCCCCcChH--HhccCCCCCEE
Confidence 88888888887765677777888888887665531 111235777888888888888766543 56777888888
Q ss_pred EEEeecC
Q 003086 715 SISCFDS 721 (849)
Q Consensus 715 ~L~~~~~ 721 (849)
++++|.+
T Consensus 187 ~l~~N~i 193 (197)
T 4ezg_A 187 YAFSQTI 193 (197)
T ss_dssp EECBC--
T ss_pred EeeCccc
Confidence 8877754
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.51 E-value=2e-14 Score=165.58 Aligned_cols=169 Identities=25% Similarity=0.248 Sum_probs=100.7
Q ss_pred hcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhccc
Q 003086 554 FSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFI 633 (849)
Q Consensus 554 ~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~ 633 (849)
+..+++|+.|++++|.+. .+| .++.|++|++|+|++| .+..+|. +..+++|+.|+|++|. +..+| .+..++
T Consensus 39 ~~~L~~L~~L~l~~n~i~----~l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~ 109 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIK----SVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLK 109 (605)
T ss_dssp HHHHTTCCCCBCTTCCCC----CCT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCT
T ss_pred hhcCCCCCEEECcCCCCC----CCh-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCC
Confidence 345666777777777764 333 4667777777777777 5666655 6777777777777554 33344 466777
Q ss_pred CCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCe
Q 003086 634 QLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQF 713 (849)
Q Consensus 634 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 713 (849)
+|++|+|++|.+.. + ..++.+++|+.|++..+.. .. +..+..+++|+.|+|++|.+....+ +..+++|+.
T Consensus 110 ~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l----~~--l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~ 179 (605)
T 1m9s_A 110 KLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKI----TD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 179 (605)
T ss_dssp TCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCC----CC--CGGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred CCCEEEecCCCCCC-C-ccccCCCccCEEECCCCcc----CC--chhhcccCCCCEEECcCCcCCCchh--hccCCCCCE
Confidence 77777777776652 2 3466666666666554421 11 2456666666666666666555443 566666666
Q ss_pred EEEEeecCCCCchhhhccccCCCCCCCeEEEecc
Q 003086 714 LSISCFDSHGSDLVAKIDELYPPEQLDELSLNFY 747 (849)
Q Consensus 714 L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~ 747 (849)
|+|++|.+.+. ..+..+++|+.|+++++
T Consensus 180 L~Ls~N~i~~l------~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 180 LYLSKNHISDL------RALAGLKNLDVLELFSQ 207 (605)
T ss_dssp EECCSSCCCBC------GGGTTCTTCSEEECCSE
T ss_pred EECcCCCCCCC------hHHccCCCCCEEEccCC
Confidence 66666654331 23444555666665544
No 102
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.51 E-value=1.3e-13 Score=141.43 Aligned_cols=180 Identities=14% Similarity=0.095 Sum_probs=146.0
Q ss_pred CccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCccccccccccccCc
Q 003086 585 QHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLG 664 (849)
Q Consensus 585 ~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 664 (849)
...++++++++ .+..+|..+. .+|+.|++++|......|..+.++++|++|++++|.+....|..+..+++|+.|++
T Consensus 14 ~~~~~l~~~~~-~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGK-SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTC-CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCC-CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45788999999 8899998765 68999999988877777778999999999999999998767777899999999997
Q ss_pred ccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEE
Q 003086 665 FRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSL 744 (849)
Q Consensus 665 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l 744 (849)
..+. ........+..+++|+.|++++|.++...+..+..+++|+.|+|++|.+.... ...+..+++|+.|++
T Consensus 91 ~~n~----l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L 162 (251)
T 3m19_A 91 ANNQ----LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP----AGAFDKLTNLQTLSL 162 (251)
T ss_dssp TTSC----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEEC
T ss_pred CCCc----ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC----HHHcCcCcCCCEEEC
Confidence 6663 33444456789999999999999988887777889999999999999776531 124566789999999
Q ss_pred eccCCCCCC-CcCCCCCCCCCceEEEeeCCcccc
Q 003086 745 NFYPGKTSP-VWLNPASLPMLRYLSVCSGNLSKM 777 (849)
Q Consensus 745 ~~~~~~~~p-~~~~~~~l~~L~~L~L~~n~l~~~ 777 (849)
+++.....| ..+ ..+++|+.|+|++|.+...
T Consensus 163 ~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 163 STNQLQSVPHGAF--DRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CSSCCSCCCTTTT--TTCTTCCEEECCSCCBCTT
T ss_pred CCCcCCccCHHHH--hCCCCCCEEEeeCCceeCC
Confidence 887544433 344 7889999999999887643
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.51 E-value=6.1e-14 Score=147.17 Aligned_cols=148 Identities=26% Similarity=0.274 Sum_probs=89.0
Q ss_pred hcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhccc
Q 003086 554 FSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFI 633 (849)
Q Consensus 554 ~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~ 633 (849)
+..+++|+.|++++|.+. .++ .++.+++|++|+|++| .+..+|. +..+++|++|++++|.. ..+|. +..++
T Consensus 42 ~~~l~~L~~L~l~~~~i~----~~~-~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~ 112 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIK----SVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKV-KDLSS-LKDLK 112 (291)
T ss_dssp HHHHHTCCEEECTTSCCC----CCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCC-CCGGG-GTTCT
T ss_pred hhhcCcccEEEccCCCcc----cCh-hHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCcC-CCChh-hccCC
Confidence 345667777777777765 333 4677777777777777 6666665 77777777777776553 33443 77777
Q ss_pred CCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCe
Q 003086 634 QLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQF 713 (849)
Q Consensus 634 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 713 (849)
+|++|++++|.+.. + ..++.+++|+.|++..+.. .. ...+..+++|+.|++++|.+....+ +..+++|+.
T Consensus 113 ~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l----~~--~~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~ 182 (291)
T 1h6t_A 113 KLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKI----TD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 182 (291)
T ss_dssp TCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCC----CC--CGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred CCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcC----Cc--chhhccCCCCCEEEccCCccccchh--hcCCCccCE
Confidence 77777777776652 2 3455566666665444421 11 1345555555555555555444432 555555555
Q ss_pred EEEEeec
Q 003086 714 LSISCFD 720 (849)
Q Consensus 714 L~L~~~~ 720 (849)
|++++|.
T Consensus 183 L~L~~N~ 189 (291)
T 1h6t_A 183 LYLSKNH 189 (291)
T ss_dssp EECCSSC
T ss_pred EECCCCc
Confidence 5555553
No 104
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.51 E-value=1.2e-14 Score=169.40 Aligned_cols=164 Identities=18% Similarity=0.090 Sum_probs=76.9
Q ss_pred hhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCC---cccCccccCCCCCcEEeeccccCCccCC
Q 003086 550 LATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPL---IHLPPSLKKLKNLQILDVSYCQNLKMLP 626 (849)
Q Consensus 550 ~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~---~~lp~~i~~L~~L~~L~L~~~~~~~~lp 626 (849)
++..+.++++|+.|+|++|.+. .+|..++.+++|++|+++.+... ...+..+..+++|+.|+++++ ....+|
T Consensus 212 l~~~~~~~~~L~~L~L~~~~~~----~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~ 286 (592)
T 3ogk_B 212 LETIARNCRSLVSVKVGDFEIL----ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMP 286 (592)
T ss_dssp HHHHHHHCTTCCEEECSSCBGG----GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGG
T ss_pred HHHHHhhCCCCcEEeccCccHH----HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHH
Confidence 3334445555555555555443 34444444555555555422111 122233444455555555432 234455
Q ss_pred hhhhcccCCcEeeccCCCCccccC-ccccccccccccCcccccCCCCCCCCCchhhhccccccceeeee-----------
Q 003086 627 SYVQSFIQLRALDVTHCGSLQYLP-KGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQL----------- 694 (849)
Q Consensus 627 ~~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~----------- 694 (849)
..+..+++|++|++++|.+..... ..++.+++|+.|++..+.. ..........+++|+.|++.+
T Consensus 287 ~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~----~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~ 362 (592)
T 3ogk_B 287 ILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIG----DRGLEVLAQYCKQLKRLRIERGADEQGMEDEE 362 (592)
T ss_dssp GGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGH----HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTT
T ss_pred HHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccC----HHHHHHHHHhCCCCCEEEeecCcccccccccc
Confidence 666667777777777776432222 2245666666666542210 011111234556666666662
Q ss_pred ccCcccch-HhhcCCCCCCeEEEEeecCC
Q 003086 695 TCGDEIEE-DALVNLRELQFLSISCFDSH 722 (849)
Q Consensus 695 ~~~~~~~~-~~l~~~~~L~~L~L~~~~~~ 722 (849)
+.++.... .....+++|++|+++++.++
T Consensus 363 ~~~~~~~~~~l~~~~~~L~~L~l~~~~l~ 391 (592)
T 3ogk_B 363 GLVSQRGLIALAQGCQELEYMAVYVSDIT 391 (592)
T ss_dssp CCCCHHHHHHHHHHCTTCSEEEEEESCCC
T ss_pred CccCHHHHHHHHhhCccCeEEEeecCCcc
Confidence 22222111 22334566666666555443
No 105
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.50 E-value=3.9e-12 Score=139.49 Aligned_cols=293 Identities=15% Similarity=0.046 Sum_probs=185.3
Q ss_pred CCccccccccHHHHHHHHhcc--CCCeEEEEEEcCCCCcHHHHHHHHhcChhhh----cc--cCceEEEEeCCcc-CHHH
Q 003086 160 HTLVVGLEGDTRKIKDWLFEA--EEGILAIGVVGMGGLGKTTIAQKVFNDREIE----NW--FERRMWVSVSQTF-TEEQ 230 (849)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~--f~~~~wv~~s~~~-~~~~ 230 (849)
+..++||+++++++.+++... ....+.+.|+|++|+||||||+.+++...-. .. ....+|++++... +...
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 98 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQA 98 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHH
Confidence 367999999999999888652 3345689999999999999999998842111 01 2346788887777 8889
Q ss_pred HHHHHHHHhcCCCC---CCCHHHHHHHHHHHhcCccEEEEEcCCCccC----HHH-HHHHHhcCCCCCCceEEEEecchh
Q 003086 231 IMRSMLRNLGDASA---GDDRGELLRKINQYLLGKRYLIVMDDVWGED----LAW-WRRIYEGLPKGKGSSIIITTRNGK 302 (849)
Q Consensus 231 ~~~~i~~~l~~~~~---~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----~~~-~~~l~~~l~~~~~s~ilvTtr~~~ 302 (849)
++..++..+..... +.+.......+.+.+..++.+|||||++... ... +..+.... .+..||+||+...
T Consensus 99 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~---~~~~iI~~t~~~~ 175 (384)
T 2qby_B 99 VLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD---ANISVIMISNDIN 175 (384)
T ss_dssp HHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS---SCEEEEEECSSTT
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC---cceEEEEEECCCc
Confidence 99999998843221 3355677788888887776799999997621 122 22333222 5778899998753
Q ss_pred hh----hhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcC---CchhH-HHHHhhh--hh
Q 003086 303 VS----QKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCK---GLPLA-IKAVGGM--ML 372 (849)
Q Consensus 303 v~----~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~---G~PLa-i~~~~~~--l~ 372 (849)
.. ..........+++.+++.++..+++...+..... .....++..+.|++.|+ |.|.. +..+-.+ ++
T Consensus 176 ~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 176 VRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLI---KGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp TTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSC---TTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred hHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcc---cCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 21 1111110137899999999999999998642111 11122455677888887 98873 3333222 22
Q ss_pred c--CCCChHHHHHHHHhhhhhhccCCchHHHHHHHhhhCCChhhHHHHHHhccCCCC-ccccHHHHHHHhHhcCCCcCCC
Q 003086 373 Y--KPPTYNEWRRTADNFRDELAENDDSVMASLQLSYDELPPYLKSCFLSFSVYPED-CVIRKEQLVYWWIGEGFVPQRN 449 (849)
Q Consensus 373 ~--~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~s~fp~~-~~i~~~~li~~wia~g~i~~~~ 449 (849)
. ..-+.+++..++..... ..+.-+++.|+++.+..+..++. ... ..+. +.+...--..| .
T Consensus 253 ~~~~~i~~~~v~~~~~~~~~----------~~~~~~~~~l~~~~~~~l~al~~-~~~~~~~~-~~~~~~~~~~g-~---- 315 (384)
T 2qby_B 253 SGGGIIRKEHVDKAIVDYEQ----------ERLIEAVKALPFHYKLALRSLIE-SEDVMSAH-KMYTDLCNKFK-Q---- 315 (384)
T ss_dssp TSSSCCCHHHHHHHHHHHHH----------HHHHHHHHSSCHHHHHHHHHHHT-CCBHHHHH-HHHHHHHHHTT-C----
T ss_pred cCCCccCHHHHHHHHHHHhc----------chHHHHHHcCCHHHHHHHHHHHH-hcccChHH-HHHHHHHHHcC-C----
Confidence 1 22356777777665421 34667788999888887777776 111 1111 11111111122 1
Q ss_pred CCCHHHHHHHHHHhhhhccceEEecc
Q 003086 450 GRSSIEAGEDCFSGLTNRCLVEVVDK 475 (849)
Q Consensus 450 ~~~~e~~~~~~~~~L~~~~ll~~~~~ 475 (849)
..........+++.|...++++....
T Consensus 316 ~~~~~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 316 KPLSYRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHHHHHhCCCEEEEec
Confidence 12234567789999999999997653
No 106
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.49 E-value=7.4e-14 Score=150.96 Aligned_cols=218 Identities=15% Similarity=0.071 Sum_probs=107.2
Q ss_pred CcceEEecCCcccccccccccc-ccCCCCccceEeccCCCCCcccCc-cccCCCCCcEE-eeccccCCccCChhhhcccC
Q 003086 558 RYLRVLDISRSIFELPLKGLLS-QTGSLQHLSYLCLSNTHPLIHLPP-SLKKLKNLQIL-DVSYCQNLKMLPSYVQSFIQ 634 (849)
Q Consensus 558 ~~Lr~L~L~~~~~~~~~~~~p~-~~~~l~~Lr~L~L~~~~~~~~lp~-~i~~L~~L~~L-~L~~~~~~~~lp~~i~~l~~ 634 (849)
++++.|+|++|.+. .+|. +|.++++|++|+|++|...+.+|. .+.++++|+.+ .+.+|......|..+..+++
T Consensus 30 ~~l~~L~Ls~N~i~----~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~ 105 (350)
T 4ay9_X 30 RNAIELRFVLTKLR----VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPN 105 (350)
T ss_dssp TTCSEEEEESCCCS----EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTT
T ss_pred CCCCEEEccCCcCC----CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccc
Confidence 45667777777665 4443 466677777777777633344553 35666665543 33333333333455666777
Q ss_pred CcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeec-cCcccchHhhcCC-CCCC
Q 003086 635 LRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLT-CGDEIEEDALVNL-RELQ 712 (849)
Q Consensus 635 L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~l~~~-~~L~ 712 (849)
|++|++++|.+....+..+....++.. |++..+ .+..+....+..+ ..++
T Consensus 106 L~~L~l~~n~l~~~~~~~~~~~~~l~~----------------------------l~l~~~~~i~~l~~~~f~~~~~~l~ 157 (350)
T 4ay9_X 106 LQYLLISNTGIKHLPDVHKIHSLQKVL----------------------------LDIQDNINIHTIERNSFVGLSFESV 157 (350)
T ss_dssp CCEEEEEEECCSSCCCCTTCCBSSCEE----------------------------EEEESCTTCCEECTTSSTTSBSSCE
T ss_pred cccccccccccccCCchhhcccchhhh----------------------------hhhccccccccccccchhhcchhhh
Confidence 777777766655322222223333333 333221 2222222223332 2345
Q ss_pred eEEEEeecCCCCchhhhccccCCCCCCCeEEEec-c-CCCCCCCcCCCCCCCCCceEEEeeCCccccccccccCcccccc
Q 003086 713 FLSISCFDSHGSDLVAKIDELYPPEQLDELSLNF-Y-PGKTSPVWLNPASLPMLRYLSVCSGNLSKMHDSFWGENNTVWK 790 (849)
Q Consensus 713 ~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~-~-~~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~fp~~ 790 (849)
.|+|++|.++.. ........+|+.|.+.+ + .....+..+ ..+++|++|+|++|+|+.++... |. .
T Consensus 158 ~L~L~~N~i~~i-----~~~~f~~~~L~~l~l~~~n~l~~i~~~~f--~~l~~L~~LdLs~N~l~~lp~~~-----~~-~ 224 (350)
T 4ay9_X 158 ILWLNKNGIQEI-----HNSAFNGTQLDELNLSDNNNLEELPNDVF--HGASGPVILDISRTRIHSLPSYG-----LE-N 224 (350)
T ss_dssp EEECCSSCCCEE-----CTTSSTTEEEEEEECTTCTTCCCCCTTTT--TTEECCSEEECTTSCCCCCCSSS-----CT-T
T ss_pred hhccccccccCC-----ChhhccccchhHHhhccCCcccCCCHHHh--ccCcccchhhcCCCCcCccChhh-----hc-c
Confidence 555555544321 01111233455555542 2 222222344 56677777777777776665432 33 5
Q ss_pred cceeecccccccccccccccccccccceeeec
Q 003086 791 IEALLFESLSDLGIEWTRLQGVMPSLHIVNAS 822 (849)
Q Consensus 791 L~~L~l~~l~~L~l~~~~~~~~~p~L~~L~i~ 822 (849)
|+.|...++..++ +.+. ...+++|+.+++.
T Consensus 225 L~~L~~l~~~~l~-~lP~-l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 225 LKKLRARSTYNLK-KLPT-LEKLVALMEASLT 254 (350)
T ss_dssp CCEEECTTCTTCC-CCCC-TTTCCSCCEEECS
T ss_pred chHhhhccCCCcC-cCCC-chhCcChhhCcCC
Confidence 6666555555555 4332 2345666666654
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.49 E-value=9.5e-14 Score=145.69 Aligned_cols=147 Identities=20% Similarity=0.211 Sum_probs=63.6
Q ss_pred hcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhccc
Q 003086 554 FSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFI 633 (849)
Q Consensus 554 ~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~ 633 (849)
+..+++|++|+|++|.+. .++. ++.+++|++|+|++| .+..+|. +..+++|++|++++|... .+ ..+..++
T Consensus 64 ~~~l~~L~~L~L~~n~l~----~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~n~i~-~~-~~l~~l~ 134 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLT----DIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSLEHNGIS-DI-NGLVHLP 134 (291)
T ss_dssp GGGCTTCCEEECCSSCCC----CCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEECTTSCCC-CC-GGGGGCT
T ss_pred HhcCCCCCEEEccCCccC----CCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEECCCCcCC-CC-hhhcCCC
Confidence 444445555555555443 2222 444455555555544 3444332 444455555555443322 22 2344445
Q ss_pred CCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCe
Q 003086 634 QLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQF 713 (849)
Q Consensus 634 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 713 (849)
+|++|++++|.+.. + ..++.+++|+.|++..+.. ... ..+..+++|+.|++++|.++... .+..+++|+.
T Consensus 135 ~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l----~~~--~~l~~l~~L~~L~L~~N~i~~l~--~l~~l~~L~~ 204 (291)
T 1h6t_A 135 QLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQI----SDI--VPLAGLTKLQNLYLSKNHISDLR--ALAGLKNLDV 204 (291)
T ss_dssp TCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCC----CCC--GGGTTCTTCCEEECCSSCCCBCG--GGTTCTTCSE
T ss_pred CCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCcc----ccc--hhhcCCCccCEEECCCCcCCCCh--hhccCCCCCE
Confidence 55555555544432 2 2344444454444333311 111 11444445555555544443331 2444445555
Q ss_pred EEEEee
Q 003086 714 LSISCF 719 (849)
Q Consensus 714 L~L~~~ 719 (849)
|++++|
T Consensus 205 L~l~~n 210 (291)
T 1h6t_A 205 LELFSQ 210 (291)
T ss_dssp EEEEEE
T ss_pred EECcCC
Confidence 555444
No 108
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.48 E-value=1.4e-12 Score=143.12 Aligned_cols=296 Identities=16% Similarity=0.072 Sum_probs=184.3
Q ss_pred CCCccccccccHHHHHHHHhcc--CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhccc---CceEEEEeCCccCHHHHHH
Q 003086 159 DHTLVVGLEGDTRKIKDWLFEA--EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWF---ERRMWVSVSQTFTEEQIMR 233 (849)
Q Consensus 159 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~s~~~~~~~~~~ 233 (849)
.+..|+||+++++.+.+++... ......+.|+|++|+||||||+.+++. ....+ ...+|+++....+...++.
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~ 95 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVLA 95 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHHH
Confidence 4467999999999999988753 334568999999999999999999883 33332 2467888777778888888
Q ss_pred HHHHHhcCCCC--CCCHHHHHHHHHHHhc--CccEEEEEcCCCccC----HHHHHHHHhcCC--CCCCceEEEEecchhh
Q 003086 234 SMLRNLGDASA--GDDRGELLRKINQYLL--GKRYLIVMDDVWGED----LAWWRRIYEGLP--KGKGSSIIITTRNGKV 303 (849)
Q Consensus 234 ~i~~~l~~~~~--~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~----~~~~~~l~~~l~--~~~~s~ilvTtr~~~v 303 (849)
.++..++.... +.+..+..+.+.+.+. +++.+||||+++... ...+..+...+. ...+..+|+||+....
T Consensus 96 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~ 175 (386)
T 2qby_A 96 DLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKF 175 (386)
T ss_dssp HHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGG
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCCh
Confidence 88888865433 3356666677777664 458999999997621 233444433332 2236677888876543
Q ss_pred hhhccc-----cccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcC---CchhHHHHHhhhh---h
Q 003086 304 SQKMGV-----KKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCK---GLPLAIKAVGGMM---L 372 (849)
Q Consensus 304 ~~~~~~-----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~---G~PLai~~~~~~l---~ 372 (849)
...+.. .....+.+++++.++..+++.+.+..... ......++.+.+++.++ |.|..+..+.... .
T Consensus 176 ~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 176 VDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK---PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIA 252 (386)
T ss_dssp GGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC---SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc---CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 222211 11137899999999999999987632211 11223556677888887 9998544332221 1
Q ss_pred ---c-CCCChHHHHHHHHhhhhhhccCCchHHHHHHHhhhCCChhhHHHHHHhccCCC-C-ccccHHHHHHHh--Hh--c
Q 003086 373 ---Y-KPPTYNEWRRTADNFRDELAENDDSVMASLQLSYDELPPYLKSCFLSFSVYPE-D-CVIRKEQLVYWW--IG--E 442 (849)
Q Consensus 373 ---~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~s~fp~-~-~~i~~~~li~~w--ia--~ 442 (849)
. ..-+.+++..++.... ...+.-++..+|.+.+..+..++.+-+ + ..+....+.... ++ .
T Consensus 253 ~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~ 322 (386)
T 2qby_A 253 ERMKDTKVKEEYVYMAKEEIE----------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKL 322 (386)
T ss_dssp HHTTCSSCCHHHHHHHHHHHH----------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHH
T ss_pred HhcCCCccCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhc
Confidence 1 1224556665554432 234566778899888877776664211 1 123333332221 11 1
Q ss_pred CCCcCCCCCCHHHHHHHHHHhhhhccceEEec
Q 003086 443 GFVPQRNGRSSIEAGEDCFSGLTNRCLVEVVD 474 (849)
Q Consensus 443 g~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~ 474 (849)
| + ..........+++.|...++++...
T Consensus 323 g-~----~~~~~~~~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 323 G-V----EAVTQRRVSDIINELDMVGILTAKV 349 (386)
T ss_dssp T-C----CCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred C-C----CCCCHHHHHHHHHHHHhCCCEEEEe
Confidence 2 1 1112355678999999999998754
No 109
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.47 E-value=6.5e-15 Score=171.80 Aligned_cols=269 Identities=14% Similarity=0.007 Sum_probs=156.8
Q ss_pred hhcCCCcceEEecCCccccccccccccccCCC--CccceEeccCCCCCc--ccCccccCCCCCcEEeeccccCCcc----
Q 003086 553 KFSECRYLRVLDISRSIFELPLKGLLSQTGSL--QHLSYLCLSNTHPLI--HLPPSLKKLKNLQILDVSYCQNLKM---- 624 (849)
Q Consensus 553 ~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l--~~Lr~L~L~~~~~~~--~lp~~i~~L~~L~~L~L~~~~~~~~---- 624 (849)
.+..+++|++|+|++|.+.. ..+..+..+ .+|++|+|++|..+. .++..+..+++|++|+|++|.....
T Consensus 107 l~~~~~~L~~L~L~~~~i~~---~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~ 183 (592)
T 3ogk_B 107 ISNNLRQLKSVHFRRMIVSD---LDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW 183 (592)
T ss_dssp HHHHCTTCCEEEEESCBCCH---HHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHH
T ss_pred HHhhCCCCCeEEeeccEecH---HHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhH
Confidence 34477888888888887652 344445443 348888888874221 2333345778888888887764333
Q ss_pred CChhhhcccCCcEeeccCCCCc----cccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCc--
Q 003086 625 LPSYVQSFIQLRALDVTHCGSL----QYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGD-- 698 (849)
Q Consensus 625 lp~~i~~l~~L~~L~l~~~~~~----~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-- 698 (849)
++..+.++++|++|++++|.+. ..++..+..+++|++|++..+.. ...+..+..+++|+.|++..+...
T Consensus 184 l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-----~~l~~~~~~~~~L~~L~l~~~~~~~~ 258 (592)
T 3ogk_B 184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI-----LELVGFFKAAANLEEFCGGSLNEDIG 258 (592)
T ss_dssp HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG-----GGGHHHHHHCTTCCEEEECBCCCCTT
T ss_pred HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH-----HHHHHHHhhhhHHHhhcccccccccc
Confidence 3445567788888888887765 23344455677788777655421 123455777788888887653211
Q ss_pred -ccchHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCC--CCCcCCCCCCCCCceEEEeeCCcc
Q 003086 699 -EIEEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKT--SPVWLNPASLPMLRYLSVCSGNLS 775 (849)
Q Consensus 699 -~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~--~p~~~~~~~l~~L~~L~L~~n~l~ 775 (849)
......+..+++|+.|.++.+. .. . ....+..+++|++|+++++.... ++..+ ..+++|++|+++ +.+.
T Consensus 259 ~~~~~~~l~~~~~L~~L~l~~~~--~~-~--l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~--~~~~~L~~L~L~-~~~~ 330 (592)
T 3ogk_B 259 MPEKYMNLVFPRKLCRLGLSYMG--PN-E--MPILFPFAAQIRKLDLLYALLETEDHCTLI--QKCPNLEVLETR-NVIG 330 (592)
T ss_dssp CTTSSSCCCCCTTCCEEEETTCC--TT-T--GGGGGGGGGGCCEEEETTCCCCHHHHHHHH--TTCTTCCEEEEE-GGGH
T ss_pred hHHHHHHhhccccccccCccccc--hh-H--HHHHHhhcCCCcEEecCCCcCCHHHHHHHH--HhCcCCCEEecc-CccC
Confidence 1111345667778887776431 11 1 11123346678888887655211 01112 567888888887 3333
Q ss_pred ccccccccCcccccccceeeccc----------cccccccc--ccccccccccceeeecc--------------cccCcc
Q 003086 776 KMHDSFWGENNTVWKIEALLFES----------LSDLGIEW--TRLQGVMPSLHIVNASW--------------CPELDS 829 (849)
Q Consensus 776 ~~~~~~~~~~~fp~~L~~L~l~~----------l~~L~l~~--~~~~~~~p~L~~L~i~~--------------c~~L~~ 829 (849)
+....... ..++ +|++|.+.+ +..+. .. ......+|+|+.|++.. |++|+.
T Consensus 331 ~~~l~~~~-~~~~-~L~~L~L~~g~~~~~~~~~~~~~~-~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~ 407 (592)
T 3ogk_B 331 DRGLEVLA-QYCK-QLKRLRIERGADEQGMEDEEGLVS-QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCD 407 (592)
T ss_dssp HHHHHHHH-HHCT-TCCEEEEECCCCSSTTSSTTCCCC-HHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCE
T ss_pred HHHHHHHH-HhCC-CCCEEEeecCccccccccccCccC-HHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcE
Confidence 22111111 1356 788888874 44444 11 11223578888888843 566777
Q ss_pred cCcC----Ccccccc
Q 003086 830 FPIE----DVGFRGG 840 (849)
Q Consensus 830 l~l~----~n~l~~~ 840 (849)
|.+. .|.+++.
T Consensus 408 L~l~~~~~~n~l~~~ 422 (592)
T 3ogk_B 408 FRLVLLDREERITDL 422 (592)
T ss_dssp EEEEECSCCSCCSSC
T ss_pred EEEeecCCCccccCc
Confidence 7774 6677763
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.45 E-value=1.9e-13 Score=155.54 Aligned_cols=186 Identities=19% Similarity=0.090 Sum_probs=140.9
Q ss_pred CcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcccCCcE
Q 003086 558 RYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRA 637 (849)
Q Consensus 558 ~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~ 637 (849)
.+|+.|+|++|.+. .+|..+. ++|++|+|++| .+..+| ..+++|++|++++|... .+|. +.+ +|++
T Consensus 59 ~~L~~L~Ls~n~L~----~lp~~l~--~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~l~-~ip~-l~~--~L~~ 124 (571)
T 3cvr_A 59 NQFSELQLNRLNLS----SLPDNLP--PQITVLEITQN-ALISLP---ELPASLEYLDACDNRLS-TLPE-LPA--SLKH 124 (571)
T ss_dssp TTCSEEECCSSCCS----CCCSCCC--TTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSCCS-CCCC-CCT--TCCE
T ss_pred CCccEEEeCCCCCC----ccCHhHc--CCCCEEECcCC-CCcccc---cccCCCCEEEccCCCCC-Ccch-hhc--CCCE
Confidence 38999999999987 5777663 89999999999 788898 56899999999977644 4887 655 9999
Q ss_pred eeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCeEEEE
Q 003086 638 LDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSIS 717 (849)
Q Consensus 638 L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~ 717 (849)
|++++|.+.+ +|. .+++|+.|++..+... . .+. .+++|+.|++++|.++.++. +. ++|+.|+|+
T Consensus 125 L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~----~-lp~---~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls 188 (571)
T 3cvr_A 125 LDVDNNQLTM-LPE---LPALLEYINADNNQLT----M-LPE---LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVS 188 (571)
T ss_dssp EECCSSCCSC-CCC---CCTTCCEEECCSSCCS----C-CCC---CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECC
T ss_pred EECCCCcCCC-CCC---cCccccEEeCCCCccC----c-CCC---cCCCcCEEECCCCCCCCcch--hh--CCCCEEECc
Confidence 9999999874 666 6889999987766432 2 222 57899999999998877554 54 899999999
Q ss_pred eecCCCCchhhhccc-c-CCCCCCCeEEEeccCCCCCCCcCCCCCCCCCceEEEeeCCccccc
Q 003086 718 CFDSHGSDLVAKIDE-L-YPPEQLDELSLNFYPGKTSPVWLNPASLPMLRYLSVCSGNLSKMH 778 (849)
Q Consensus 718 ~~~~~~~~~~~~l~~-l-~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~ 778 (849)
+|.++.... +.. + ..++.|+.|+++++....+|.++ ..+++|+.|+|++|.++...
T Consensus 189 ~N~L~~lp~---~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l--~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 189 TNLLESLPA---VPVRNHHSEETEIFFRCRENRITHIPENI--LSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp SSCCSSCCC---CC--------CCEEEECCSSCCCCCCGGG--GGSCTTEEEECCSSSCCHHH
T ss_pred CCCCCchhh---HHHhhhcccccceEEecCCCcceecCHHH--hcCCCCCEEEeeCCcCCCcC
Confidence 997764211 111 1 11223399999988766678766 66999999999999987543
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.44 E-value=2.5e-13 Score=156.47 Aligned_cols=172 Identities=17% Similarity=0.188 Sum_probs=129.6
Q ss_pred hhccCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccc
Q 003086 526 ISNLKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSL 605 (849)
Q Consensus 526 ~~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i 605 (849)
..+.+|+.|.+.+.... .++ .|..+++|+.|+|++|.+. .++. ++.+++|++|+|++| .+..+| .+
T Consensus 40 ~~L~~L~~L~l~~n~i~------~l~-~l~~l~~L~~L~Ls~N~l~----~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l 105 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIK------SVQ-GIQYLPNVTKLFLNGNKLT----DIKP-LTNLKNLGWLFLDEN-KIKDLS-SL 105 (605)
T ss_dssp HHHTTCCCCBCTTCCCC------CCT-TGGGCTTCCEEECTTSCCC----CCGG-GGGCTTCCEEECCSS-CCCCCT-TS
T ss_pred hcCCCCCEEECcCCCCC------CCh-HHccCCCCCEEEeeCCCCC----CChh-hccCCCCCEEECcCC-CCCCCh-hh
Confidence 35667777766554321 222 5788899999999999886 3444 888999999999998 777776 58
Q ss_pred cCCCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccc
Q 003086 606 KKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLT 685 (849)
Q Consensus 606 ~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~ 685 (849)
..+++|+.|+|++|... .+ ..+..+++|+.|+|++|.+.. + ..++.+++|+.|++..+.. .... .+..++
T Consensus 106 ~~l~~L~~L~Ls~N~l~-~l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l----~~~~--~l~~l~ 175 (605)
T 1m9s_A 106 KDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQI----SDIV--PLAGLT 175 (605)
T ss_dssp TTCTTCCEEECTTSCCC-CC-GGGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCC----CCCG--GGTTCT
T ss_pred ccCCCCCEEEecCCCCC-CC-ccccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcC----CCch--hhccCC
Confidence 88999999999977644 34 358889999999999998873 3 5688889999998766532 2222 288889
Q ss_pred cccceeeeeccCcccchHhhcCCCCCCeEEEEeecCCC
Q 003086 686 RLRKLGLQLTCGDEIEEDALVNLRELQFLSISCFDSHG 723 (849)
Q Consensus 686 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~ 723 (849)
+|+.|+|++|.++.+ ..+..+++|+.|+|++|.+..
T Consensus 176 ~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 176 KLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp TCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 999999999987765 358888999999998886544
No 112
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.42 E-value=1.5e-14 Score=168.72 Aligned_cols=203 Identities=19% Similarity=0.154 Sum_probs=117.3
Q ss_pred cceeEeeccCcc----hHhhh-hccCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccc-cccccccCC
Q 003086 510 NCRHLGVTSDVE----SKQLI-SNLKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPL-KGLLSQTGS 583 (849)
Q Consensus 510 ~~r~lsi~~~~~----~~~~~-~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~-~~~p~~~~~ 583 (849)
+.+++.+....- ..... .+++|++|.+.+...-. ...++..+.++++|++|+|++|.+.... ..++.....
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~---~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS---TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE---HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC---HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 456676664321 22222 57899998876542110 1135556678999999999999876311 113333447
Q ss_pred CCccceEeccCCC-CC--cccCccccCCCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCC------ccccCcccc
Q 003086 584 LQHLSYLCLSNTH-PL--IHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGS------LQYLPKGFG 654 (849)
Q Consensus 584 l~~Lr~L~L~~~~-~~--~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~------~~~~p~~i~ 654 (849)
+++|++|+|++|. .+ ..++..+..+++|++|++++|.....+|..+.++++|++|+++.+.. ...++..++
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~ 262 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence 7899999999983 11 12333345689999999998866666888889999999999766532 012233445
Q ss_pred ccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccch-HhhcCCCCCCeEEEEee
Q 003086 655 KLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEE-DALVNLRELQFLSISCF 719 (849)
Q Consensus 655 ~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~L~~~ 719 (849)
++++|+.|...... .....+..+..+++|+.|++++|.+..... ..+..+++|+.|++++|
T Consensus 263 ~~~~L~~Ls~~~~~----~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 263 GCKELRCLSGFWDA----VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp TCTTCCEEECCBTC----CGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred cCCCcccccCCccc----chhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 55555555211110 011112223345666666666554332111 22345566666666544
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.40 E-value=8.3e-13 Score=132.26 Aligned_cols=149 Identities=18% Similarity=0.217 Sum_probs=77.7
Q ss_pred EEecCCccccccccccccccCCCCccceEeccCCCCCcccCc-cccCCCCCcEEeeccccCCccCChhhhcccCCcEeec
Q 003086 562 VLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPP-SLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDV 640 (849)
Q Consensus 562 ~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l 640 (849)
.++++++.+. .+|..+. ++|++|+|++| .+..+|. .+..+++|++|+|++|......|..+.++++|++|++
T Consensus 15 ~v~c~~~~l~----~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L 87 (220)
T 2v9t_B 15 IVDCRGKGLT----EIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL 87 (220)
T ss_dssp EEECTTSCCS----SCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEEC
T ss_pred EEEcCCCCcC----cCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEEC
Confidence 4455555543 3444332 45555555555 4444443 4555555555555555444444555555555555555
Q ss_pred cCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCeEEEEeec
Q 003086 641 THCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSISCFD 720 (849)
Q Consensus 641 ~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 720 (849)
++|.+....+..+..+++|+.|++..+. .....+..+..+++|+.|++++|.++.+.+..+..+++|+.|+|++|.
T Consensus 88 s~N~l~~l~~~~f~~l~~L~~L~L~~N~----l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 88 YGNKITELPKSLFEGLFSLQLLLLNANK----INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC----CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCcCCccCHhHccCCCCCCEEECCCCC----CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 5555542222224445555555543332 122223345566666666666666665555556666677777776664
Q ss_pred C
Q 003086 721 S 721 (849)
Q Consensus 721 ~ 721 (849)
+
T Consensus 164 ~ 164 (220)
T 2v9t_B 164 F 164 (220)
T ss_dssp E
T ss_pred c
Confidence 3
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.38 E-value=9.7e-13 Score=131.78 Aligned_cols=150 Identities=17% Similarity=0.095 Sum_probs=86.4
Q ss_pred EEecCCccccccccccccccCCCCccceEeccCCCCCcccC--ccccCCCCCcEEeeccccCCccCChhhhcccCCcEee
Q 003086 562 VLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLP--PSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALD 639 (849)
Q Consensus 562 ~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp--~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~ 639 (849)
.+++++|.+. .+|..+. ..+++|+|++| .+..++ ..+..+++|++|++++|......|..+.++++|++|+
T Consensus 15 ~l~~s~n~l~----~iP~~~~--~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 15 TVDCSNQKLN----KIPEHIP--QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87 (220)
T ss_dssp EEECCSSCCS----SCCSCCC--TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred EeEeCCCCcc----cCccCCC--CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence 5666666654 4554442 23456666666 455542 2255666666666665554444444566666666666
Q ss_pred ccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCeEEEEee
Q 003086 640 VTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSISCF 719 (849)
Q Consensus 640 l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~ 719 (849)
+++|.+....+..++.+++|++|++..+. .....+..+..+++|+.|++++|.++...+..+..+++|+.|+|++|
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~----l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESLKTLMLRSNR----ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSCCEEECTTSC----CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CCCCccCccCHhHhcCCcCCCEEECCCCc----CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 66666654444445566666666544432 22333345566677777777777666666666777777777777766
Q ss_pred cCC
Q 003086 720 DSH 722 (849)
Q Consensus 720 ~~~ 722 (849)
.+.
T Consensus 164 ~l~ 166 (220)
T 2v70_A 164 PFN 166 (220)
T ss_dssp CEE
T ss_pred CCc
Confidence 543
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.37 E-value=9.8e-13 Score=129.39 Aligned_cols=152 Identities=14% Similarity=0.154 Sum_probs=119.7
Q ss_pred hccCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCc-ccCccc
Q 003086 527 SNLKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLI-HLPPSL 605 (849)
Q Consensus 527 ~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~-~lp~~i 605 (849)
.+++++.+.+.+.. +. .++ .+..+++|++|++++|.+. .+..+..+++|++|++++| .+. ..|..+
T Consensus 42 ~l~~L~~L~l~~n~-----i~-~l~-~l~~l~~L~~L~l~~n~~~-----~~~~l~~l~~L~~L~l~~n-~l~~~~~~~l 108 (197)
T 4ezg_A 42 QMNSLTYITLANIN-----VT-DLT-GIEYAHNIKDLTINNIHAT-----NYNPISGLSNLERLRIMGK-DVTSDKIPNL 108 (197)
T ss_dssp HHHTCCEEEEESSC-----CS-CCT-TGGGCTTCSEEEEESCCCS-----CCGGGTTCTTCCEEEEECT-TCBGGGSCCC
T ss_pred hcCCccEEeccCCC-----cc-ChH-HHhcCCCCCEEEccCCCCC-----cchhhhcCCCCCEEEeECC-ccCcccChhh
Confidence 45667777665532 22 344 5888999999999999764 3457899999999999999 555 478889
Q ss_pred cCCCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccc
Q 003086 606 KKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLT 685 (849)
Q Consensus 606 ~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~ 685 (849)
+.+++|++|++++|......|..+..+++|++|++++|.....+| .++.+++|+.|++..+... . +..+..++
T Consensus 109 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~----~--~~~l~~l~ 181 (197)
T 4ezg_A 109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH----D--YRGIEDFP 181 (197)
T ss_dssp TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC----C--CTTGGGCS
T ss_pred cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc----C--hHHhccCC
Confidence 999999999999888777788899999999999999998443565 6899999999998776422 2 23788999
Q ss_pred cccceeeeeccCc
Q 003086 686 RLRKLGLQLTCGD 698 (849)
Q Consensus 686 ~L~~L~l~~~~~~ 698 (849)
+|+.|++++|.+.
T Consensus 182 ~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 182 KLNQLYAFSQTIG 194 (197)
T ss_dssp SCCEEEECBC---
T ss_pred CCCEEEeeCcccC
Confidence 9999999999754
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.36 E-value=4.7e-13 Score=138.06 Aligned_cols=147 Identities=23% Similarity=0.201 Sum_probs=71.4
Q ss_pred hcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhccc
Q 003086 554 FSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFI 633 (849)
Q Consensus 554 ~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~ 633 (849)
+..+++|++|++++|.+. .++ .++.+++|++|+|++| .+..+|. +..+++|++|++++|. +..+|.. .. +
T Consensus 37 ~~~l~~L~~L~l~~n~i~----~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~-~~-~ 106 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQ----SLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRNR-LKNLNGI-PS-A 106 (263)
T ss_dssp HHHHTTCSEEECTTSCCC----CCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSC-CSCCTTC-CC-S
T ss_pred hhhcCcCcEEECcCCCcc----cch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCCc-cCCcCcc-cc-C
Confidence 445555555555555554 233 4555555555555555 4555544 5555555555555443 2223331 12 5
Q ss_pred CCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCe
Q 003086 634 QLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQF 713 (849)
Q Consensus 634 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 713 (849)
+|++|++++|.+. .++ .++.+++|+.|++..+.. .. ...+..+++|+.|++++|.+... ..+..+++|+.
T Consensus 107 ~L~~L~L~~N~l~-~~~-~l~~l~~L~~L~Ls~N~i----~~--~~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~ 176 (263)
T 1xeu_A 107 CLSRLFLDNNELR-DTD-SLIHLKNLEILSIRNNKL----KS--IVMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNW 176 (263)
T ss_dssp SCCEEECCSSCCS-BSG-GGTTCTTCCEEECTTSCC----CB--CGGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCE
T ss_pred cccEEEccCCccC-CCh-hhcCcccccEEECCCCcC----CC--ChHHccCCCCCEEECCCCcCcch--HHhccCCCCCE
Confidence 5555555555554 222 345555555555433321 11 12344555555555555544433 33444555555
Q ss_pred EEEEeec
Q 003086 714 LSISCFD 720 (849)
Q Consensus 714 L~L~~~~ 720 (849)
|++++|.
T Consensus 177 L~l~~N~ 183 (263)
T 1xeu_A 177 IDLTGQK 183 (263)
T ss_dssp EEEEEEE
T ss_pred EeCCCCc
Confidence 5555543
No 117
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.36 E-value=3.4e-14 Score=165.73 Aligned_cols=290 Identities=17% Similarity=0.117 Sum_probs=171.3
Q ss_pred hhhccCccchhcccccccc----------cchhhhhhhhhcCCCcceEEecCCccccccccccccccC-CCCccceEecc
Q 003086 525 LISNLKLRALMSTTKTAEV----------NNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTG-SLQHLSYLCLS 593 (849)
Q Consensus 525 ~~~~~~lrsl~~~~~~~~~----------~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~-~l~~Lr~L~L~ 593 (849)
...+++++++.+.+..... ......++..+..+++|+.|+|++|.+.. ..+..+. .+++|++|+|+
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~---~~~~~l~~~~~~L~~L~L~ 138 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTD---DCLELIAKSFKNFKVLVLS 138 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCH---HHHHHHHHHCTTCCEEEEE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcH---HHHHHHHHhCCCCcEEeCC
Confidence 3456778887776542110 00001123345678889999999988763 3444554 58899999999
Q ss_pred CCCCCcc--cCccccCCCCCcEEeeccccCCccCChh----hhcccCCcEeeccCCC--Cc-cccCccccccccccccCc
Q 003086 594 NTHPLIH--LPPSLKKLKNLQILDVSYCQNLKMLPSY----VQSFIQLRALDVTHCG--SL-QYLPKGFGKLLNLEVLLG 664 (849)
Q Consensus 594 ~~~~~~~--lp~~i~~L~~L~~L~L~~~~~~~~lp~~----i~~l~~L~~L~l~~~~--~~-~~~p~~i~~l~~L~~L~~ 664 (849)
+|..+.. ++..+..+++|++|++++|......+.. ...+++|++|++++|. +. ..++.-+..+++|+.|++
T Consensus 139 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L 218 (594)
T 2p1m_B 139 SCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218 (594)
T ss_dssp SCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEEC
T ss_pred CcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEec
Confidence 8854444 5555568899999999987743333332 3366789999998886 11 112222345688888886
Q ss_pred ccccCCCCCCCCCchhhhccccccceeeeeccC-------cccchHhhcCCCCCCeEE-EEeecCCCCchhhhccccCCC
Q 003086 665 FRPARSSQPEGCRISELKNLTRLRKLGLQLTCG-------DEIEEDALVNLRELQFLS-ISCFDSHGSDLVAKIDELYPP 736 (849)
Q Consensus 665 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-------~~~~~~~l~~~~~L~~L~-L~~~~~~~~~~~~~l~~l~~~ 736 (849)
..+.. ....+..+..+++|+.|++..+.. ... ...+.++++|+.|. +... ....+ ......+
T Consensus 219 ~~~~~----~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l-~~~l~~~~~L~~Ls~~~~~---~~~~l--~~~~~~~ 288 (594)
T 2p1m_B 219 NRAVP----LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL-SVALSGCKELRCLSGFWDA---VPAYL--PAVYSVC 288 (594)
T ss_dssp CTTSC----HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHH-HHHHHTCTTCCEEECCBTC---CGGGG--GGGHHHH
T ss_pred CCCCc----HHHHHHHHhcCCcceEcccccccCccchhhHHHH-HHHHhcCCCcccccCCccc---chhhH--HHHHHhh
Confidence 65521 111344567888899888665421 111 24677888888883 2211 11111 1111246
Q ss_pred CCCCeEEEeccCCCC--CCCcCCCCCCCCCceEEEeeCCccccccccccCcccccccceeeccc--------cccccccc
Q 003086 737 EQLDELSLNFYPGKT--SPVWLNPASLPMLRYLSVCSGNLSKMHDSFWGENNTVWKIEALLFES--------LSDLGIEW 806 (849)
Q Consensus 737 ~~L~~L~l~~~~~~~--~p~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~fp~~L~~L~l~~--------l~~L~l~~ 806 (849)
++|++|+++++.... ++..+ ..+|+|++|++++| +......... ..++ +|+.|.+.+ +..+. ..
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~--~~~~~L~~L~l~~~-~~~~~l~~l~-~~~~-~L~~L~L~~~~~~g~~~~~~l~-~~ 362 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLL--CQCPKLQRLWVLDY-IEDAGLEVLA-STCK-DLRELRVFPSEPFVMEPNVALT-EQ 362 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHH--TTCTTCCEEEEEGG-GHHHHHHHHH-HHCT-TCCEEEEECSCTTCSSCSSCCC-HH
T ss_pred CCCCEEEccCCCCCHHHHHHHH--hcCCCcCEEeCcCc-cCHHHHHHHH-HhCC-CCCEEEEecCcccccccCCCCC-HH
Confidence 789999998765211 11122 57899999999986 4322111111 1356 899998843 22332 11
Q ss_pred --ccccccccccceeeec--------------ccccCcccCcC
Q 003086 807 --TRLQGVMPSLHIVNAS--------------WCPELDSFPIE 833 (849)
Q Consensus 807 --~~~~~~~p~L~~L~i~--------------~c~~L~~l~l~ 833 (849)
......+|+|+.|.+. .||+|+.|.+.
T Consensus 363 ~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 363 GLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp HHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence 1112347899999765 37888888888
No 118
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.35 E-value=1.7e-12 Score=128.85 Aligned_cols=129 Identities=19% Similarity=0.178 Sum_probs=54.7
Q ss_pred ccceEeccCCCCCcccCcc-ccCCCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCccccccccccccCc
Q 003086 586 HLSYLCLSNTHPLIHLPPS-LKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLG 664 (849)
Q Consensus 586 ~Lr~L~L~~~~~~~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 664 (849)
+|++|+|++| .+..+|.. +..+++|++|++++|......+..+..+++|++|++++|.+....+..++.+++|+.|++
T Consensus 29 ~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 29 QTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 4555555554 33333332 344455555555544333222223344555555555554443222222333333433333
Q ss_pred ccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCeEEEEee
Q 003086 665 FRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSISCF 719 (849)
Q Consensus 665 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~ 719 (849)
..+. ........+..+++|+.|++++|.+....+..+..+++|+.|++++|
T Consensus 108 ~~N~----l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 108 NTNQ----LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CSSC----CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCCc----CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 2221 11111112344555555555555544444444455555555555544
No 119
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.35 E-value=3.2e-12 Score=138.00 Aligned_cols=223 Identities=14% Similarity=0.062 Sum_probs=132.2
Q ss_pred eEEecCCccccccccccccccCCCCccceEeccCCCCCcccCc-cccCCCCCcEEeeccccCCccCCh-hhhcccCCcEe
Q 003086 561 RVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPP-SLKKLKNLQILDVSYCQNLKMLPS-YVQSFIQLRAL 638 (849)
Q Consensus 561 r~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L 638 (849)
++++.+++.++ .+|..+ .++|++|+|++| .++.+|. .|.++++|++|+|++|.....+|. .|.++++|..+
T Consensus 12 ~~v~C~~~~Lt----~iP~~l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~ 84 (350)
T 4ay9_X 12 RVFLCQESKVT----EIPSDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI 84 (350)
T ss_dssp TEEEEESTTCC----SCCTTC--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEE
T ss_pred CEEEecCCCCC----ccCcCc--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhh
Confidence 34455555554 455444 245666666666 5555554 355666666666665554444443 33455554432
Q ss_pred e-ccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCeEEEE
Q 003086 639 D-VTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSIS 717 (849)
Q Consensus 639 ~-l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~ 717 (849)
. +..|.+. ...+..+..+++|+.|++++|.+....+..+....++..|++.
T Consensus 85 l~~~~N~l~----------------------------~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~ 136 (350)
T 4ay9_X 85 RIEKANNLL----------------------------YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ 136 (350)
T ss_dssp EEEEETTCC----------------------------EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEE
T ss_pred hcccCCccc----------------------------ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhc
Confidence 2 2223322 2223346677788888888887766655555556677788886
Q ss_pred eec-CCCCchhhhccccCCC-CCCCeEEEeccCCCCCCCcCCCCCCCCCceEEEe-eCCccccccccccCccccccccee
Q 003086 718 CFD-SHGSDLVAKIDELYPP-EQLDELSLNFYPGKTSPVWLNPASLPMLRYLSVC-SGNLSKMHDSFWGENNTVWKIEAL 794 (849)
Q Consensus 718 ~~~-~~~~~~~~~l~~l~~~-~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~~~fp~~L~~L 794 (849)
.+. +... ....+... ..++.|.++++....+|... ...++|+.|.+. +|.+..++...+.. ++ +|+.|
T Consensus 137 ~~~~i~~l----~~~~f~~~~~~l~~L~L~~N~i~~i~~~~--f~~~~L~~l~l~~~n~l~~i~~~~f~~--l~-~L~~L 207 (350)
T 4ay9_X 137 DNINIHTI----ERNSFVGLSFESVILWLNKNGIQEIHNSA--FNGTQLDELNLSDNNNLEELPNDVFHG--AS-GPVIL 207 (350)
T ss_dssp SCTTCCEE----CTTSSTTSBSSCEEEECCSSCCCEECTTS--STTEEEEEEECTTCTTCCCCCTTTTTT--EE-CCSEE
T ss_pred cccccccc----cccchhhcchhhhhhccccccccCCChhh--ccccchhHHhhccCCcccCCCHHHhcc--Cc-ccchh
Confidence 542 2211 01122233 36788999876554444433 456789999997 47788887665543 55 88888
Q ss_pred ecccccccccccccccccccccceeeecccccCcccC
Q 003086 795 LFESLSDLGIEWTRLQGVMPSLHIVNASWCPELDSFP 831 (849)
Q Consensus 795 ~l~~l~~L~l~~~~~~~~~p~L~~L~i~~c~~L~~l~ 831 (849)
++++.. +. .+. .+.+..|+.|.+.+|.+|+.+|
T Consensus 208 dLs~N~-l~-~lp--~~~~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 208 DISRTR-IH-SLP--SYGLENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp ECTTSC-CC-CCC--SSSCTTCCEEECTTCTTCCCCC
T ss_pred hcCCCC-cC-ccC--hhhhccchHhhhccCCCcCcCC
Confidence 888653 44 332 2457888889888888888887
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.35 E-value=1.8e-12 Score=133.70 Aligned_cols=169 Identities=16% Similarity=0.110 Sum_probs=133.0
Q ss_pred CCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcccCC
Q 003086 556 ECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQL 635 (849)
Q Consensus 556 ~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L 635 (849)
.+..+..++++++.+. .++ .+..+++|++|++++| .+..+| .+..+++|++|++++|. +..+|. +.++++|
T Consensus 17 ~l~~l~~l~l~~~~i~----~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L 87 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVT----DLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKL 87 (263)
T ss_dssp HHHHHHHHHHTCSCTT----SEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSC
T ss_pred HHHHHHHHHhcCCCcc----ccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCC
Confidence 4667778888988886 444 6788999999999999 888888 68999999999999775 445555 8899999
Q ss_pred cEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCeEE
Q 003086 636 RALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLS 715 (849)
Q Consensus 636 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 715 (849)
++|++++|.+. .+|.. .. ++|+.|++..+.. .. +..+..+++|+.|++++|.++... .+..+++|+.|+
T Consensus 88 ~~L~L~~N~l~-~l~~~-~~-~~L~~L~L~~N~l----~~--~~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~ 156 (263)
T 1xeu_A 88 EELSVNRNRLK-NLNGI-PS-ACLSRLFLDNNEL----RD--TDSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLD 156 (263)
T ss_dssp CEEECCSSCCS-CCTTC-CC-SSCCEEECCSSCC----SB--SGGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEE
T ss_pred CEEECCCCccC-CcCcc-cc-CcccEEEccCCcc----CC--ChhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEE
Confidence 99999999887 45543 33 8899998766632 22 346889999999999999887763 588899999999
Q ss_pred EEeecCCCCchhhhccccCCCCCCCeEEEeccCCC
Q 003086 716 ISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGK 750 (849)
Q Consensus 716 L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~ 750 (849)
+++|.+.+. ..+..+++|+.|+++++...
T Consensus 157 L~~N~i~~~------~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 157 LHGNEITNT------GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CTTSCCCBC------TTSTTCCCCCEEEEEEEEEE
T ss_pred CCCCcCcch------HHhccCCCCCEEeCCCCccc
Confidence 998876543 45667889999999876543
No 121
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.35 E-value=3e-12 Score=129.08 Aligned_cols=101 Identities=22% Similarity=0.236 Sum_probs=53.3
Q ss_pred CcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCcc-ccCCCCCcEEeeccccCCccCChhhhcccCCc
Q 003086 558 RYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPS-LKKLKNLQILDVSYCQNLKMLPSYVQSFIQLR 636 (849)
Q Consensus 558 ~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 636 (849)
++|++|+|++|.+.+ ..|..|..+++|++|+|++| .+..+|.. +..+++|++|+|++|......+..+..+++|+
T Consensus 40 ~~L~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 115 (229)
T 3e6j_A 40 TNAQILYLHDNQITK---LEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK 115 (229)
T ss_dssp TTCSEEECCSSCCCC---CCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCEEEcCCCccCc---cCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhC
Confidence 556666666666552 33455556666666666666 45555432 35566666666665543333333345566666
Q ss_pred EeeccCCCCccccCccccccccccccC
Q 003086 637 ALDVTHCGSLQYLPKGFGKLLNLEVLL 663 (849)
Q Consensus 637 ~L~l~~~~~~~~~p~~i~~l~~L~~L~ 663 (849)
+|++++|.+. .+|..+..+++|+.|+
T Consensus 116 ~L~Ls~N~l~-~lp~~~~~l~~L~~L~ 141 (229)
T 3e6j_A 116 ELFMCCNKLT-ELPRGIERLTHLTHLA 141 (229)
T ss_dssp EEECCSSCCC-SCCTTGGGCTTCSEEE
T ss_pred eEeccCCccc-ccCcccccCCCCCEEE
Confidence 6666665554 4444444444444444
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.32 E-value=2.2e-12 Score=152.45 Aligned_cols=152 Identities=22% Similarity=0.215 Sum_probs=97.2
Q ss_pred CcceeEeeccCcc---hHhhhhccCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccccCCCC
Q 003086 509 LNCRHLGVTSDVE---SKQLISNLKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQ 585 (849)
Q Consensus 509 ~~~r~lsi~~~~~---~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~ 585 (849)
..++++.+..... ........+|+.+.+.......|.+. ..+..|..++.|++|+|++|.+. .+|..+..++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~----~l~~~~~~l~ 247 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF----NISANIFKYD 247 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCS----CCCGGGGGCC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC----CCChhhcCCC
Confidence 3455665543221 12223344455544444333333333 56778999999999999999986 6888888999
Q ss_pred ccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCccccccccccccCcc
Q 003086 586 HLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGF 665 (849)
Q Consensus 586 ~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~ 665 (849)
+|++|+|++| .+..+|..|++|++|++|+|++|.+. .+|..|++|++|++|+|++|.+. .+|..|+.|++|+.|++.
T Consensus 248 ~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 248 FLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp SCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred CCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence 9999999999 78899999999999999999987755 88999999999999999999887 889899999999999976
Q ss_pred ccc
Q 003086 666 RPA 668 (849)
Q Consensus 666 ~~~ 668 (849)
++.
T Consensus 325 ~N~ 327 (727)
T 4b8c_D 325 GNP 327 (727)
T ss_dssp TSC
T ss_pred CCc
Confidence 653
No 123
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.31 E-value=4.9e-12 Score=125.61 Aligned_cols=170 Identities=16% Similarity=0.111 Sum_probs=119.4
Q ss_pred cceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCccccccccccccCccc
Q 003086 587 LSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFR 666 (849)
Q Consensus 587 Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~ 666 (849)
-+.++.+++ .+..+|..+ ..+|++|++++|......+..+.++++|++|++++|.+....+..++.+++|++|++..
T Consensus 9 ~~~v~c~~~-~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 9 GTTVECYSQ-GRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TTEEECCSS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCC-CccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 356777777 777888654 46899999998876655555678999999999999998744444578888898888665
Q ss_pred ccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEec
Q 003086 667 PARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNF 746 (849)
Q Consensus 667 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~ 746 (849)
+.. .......+..+++|+.|++++|.+....+..+..+++|+.|++++|.++... ...+..+++|+.|++.+
T Consensus 86 n~l----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~----~~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 86 NQL----QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP----DGVFDRLTSLQYIWLHD 157 (208)
T ss_dssp SCC----CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC----TTTTTTCTTCCEEECCS
T ss_pred CcC----CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC----HHHhccCCCccEEEecC
Confidence 532 3333344678888888888888877776666778888888888887665421 12234566677777665
Q ss_pred cCCCCCCCcCCCCCCCCCceEEEeeCCcc
Q 003086 747 YPGKTSPVWLNPASLPMLRYLSVCSGNLS 775 (849)
Q Consensus 747 ~~~~~~p~~~~~~~l~~L~~L~L~~n~l~ 775 (849)
+. |. +.+|+|+.|+++.|+++
T Consensus 158 N~------~~--~~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 158 NP------WD--CTCPGIRYLSEWINKHS 178 (208)
T ss_dssp CC------BC--CCTTTTHHHHHHHHHCT
T ss_pred CC------ee--cCCCCHHHHHHHHHhCC
Confidence 42 22 45666666666666555
No 124
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.31 E-value=1.8e-11 Score=124.82 Aligned_cols=197 Identities=13% Similarity=0.046 Sum_probs=120.1
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhc
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLG 240 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 240 (849)
.+++||+..++.+..++..+. ..+.+.|+|++|+||||||+.+++.. ...+... ...+... .. ...+.....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~--~~~~~~~-~~~~~~~---~~-~~~~~~~~~ 94 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGL--NCETGIT-ATPCGVC---DN-CREIEQGRF 94 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHH--HCTTCSC-SSCCSCS---HH-HHHHHTTCC
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHh--cCCCCCC-CCCCccc---HH-HHHHhccCC
Confidence 469999999999999997653 23478999999999999999998732 2111100 0000000 00 000000000
Q ss_pred C-----CCCCCCHHHHHHHHHHHh-----cCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEecchh-hhhhcc
Q 003086 241 D-----ASAGDDRGELLRKINQYL-----LGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITTRNGK-VSQKMG 308 (849)
Q Consensus 241 ~-----~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTtr~~~-v~~~~~ 308 (849)
. .............+.+.+ .+++.+||+||++..+...++.+...+.... +..+|+||+... +.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~ 174 (250)
T 1njg_A 95 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 174 (250)
T ss_dssp SSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHH
T ss_pred cceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHH
Confidence 0 000001111111222221 3467999999998766777888877776544 788888887643 211111
Q ss_pred ccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHhhhh
Q 003086 309 VKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVGGMM 371 (849)
Q Consensus 309 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l 371 (849)
.. ...+++.+++.++..+++.+.+.... ....++..+.|++.|+|.|..+..+...+
T Consensus 175 ~r-~~~i~l~~l~~~e~~~~l~~~~~~~~-----~~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 175 SR-CLQFHLKALDVEQIRHQLEHILNEEH-----IAHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp TT-SEEEECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HH-hhhccCCCCCHHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11 25789999999999999998875322 12224667889999999999888776443
No 125
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.30 E-value=3.8e-12 Score=138.09 Aligned_cols=157 Identities=18% Similarity=0.116 Sum_probs=117.9
Q ss_pred CcceEEecCCccccccccccccccC-CCCccceEeccCCCCCcccC-ccccCCCCCcEEeeccccCCccCChhhhcccCC
Q 003086 558 RYLRVLDISRSIFELPLKGLLSQTG-SLQHLSYLCLSNTHPLIHLP-PSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQL 635 (849)
Q Consensus 558 ~~Lr~L~L~~~~~~~~~~~~p~~~~-~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L 635 (849)
+.+++|+|++|.+.. ..+..+. .+++|++|+|++| .+..+| ..+..+++|++|+|++|......+..+.++++|
T Consensus 39 ~~l~~L~Ls~N~l~~---l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 114 (361)
T 2xot_A 39 SYTALLDLSHNNLSR---LRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQAL 114 (361)
T ss_dssp TTCSEEECCSSCCCE---ECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CCCCEEECCCCCCCc---cChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCC
Confidence 458899999998872 3334465 8899999999999 677666 468899999999999877655555678889999
Q ss_pred cEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhh---hccccccceeeeeccCcccchHhhcCCCC--
Q 003086 636 RALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISEL---KNLTRLRKLGLQLTCGDEIEEDALVNLRE-- 710 (849)
Q Consensus 636 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~~~~~~~l~~~~~-- 710 (849)
++|++++|.+....|..++.+++|+.|++..+.. .......+ ..+++|+.|++++|.+..+....+..++.
T Consensus 115 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l----~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~ 190 (361)
T 2xot_A 115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI----SRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWV 190 (361)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC----CSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHH
T ss_pred CEEECCCCcccEECHHHhCCcccCCEEECCCCcC----CeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhh
Confidence 9999999998866677888899999998766532 22222223 57888999999999888777777777776
Q ss_pred CCeEEEEeecCC
Q 003086 711 LQFLSISCFDSH 722 (849)
Q Consensus 711 L~~L~L~~~~~~ 722 (849)
|+.|+|++|.+.
T Consensus 191 l~~l~l~~N~~~ 202 (361)
T 2xot_A 191 KNGLYLHNNPLE 202 (361)
T ss_dssp HTTEECCSSCEE
T ss_pred cceEEecCCCcc
Confidence 478888877544
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.29 E-value=8.5e-12 Score=119.19 Aligned_cols=108 Identities=21% Similarity=0.179 Sum_probs=84.9
Q ss_pred cCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcccC
Q 003086 555 SECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQ 634 (849)
Q Consensus 555 ~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~ 634 (849)
...+.|+.|+|++|.+.. ..+|..+..+++|++|+|++| .+..+ ..+..+++|++|++++|.....+|..+.++++
T Consensus 21 ~~~~~L~~L~l~~n~l~~--~~i~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 96 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSND--GKIEGLTAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96 (168)
T ss_dssp SCTTSCSEEECCSCBCBT--TBCSSCCGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred CCcccCCEEECCCCCCCh--hhHHHHHHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence 445889999999999851 157778899999999999999 67777 67899999999999988876668888888999
Q ss_pred CcEeeccCCCCccccC--ccccccccccccCcccc
Q 003086 635 LRALDVTHCGSLQYLP--KGFGKLLNLEVLLGFRP 667 (849)
Q Consensus 635 L~~L~l~~~~~~~~~p--~~i~~l~~L~~L~~~~~ 667 (849)
|++|++++|.+. .+| ..++.+++|+.|++..+
T Consensus 97 L~~L~Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 97 LTHLNLSGNKLK-DISTLEPLKKLECLKSLDLFNC 130 (168)
T ss_dssp CCEEECBSSSCC-SSGGGGGGSSCSCCCEEECCSS
T ss_pred CCEEeccCCccC-cchhHHHHhcCCCCCEEEeeCC
Confidence 999999999876 333 44555555555554433
No 127
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.28 E-value=6.4e-12 Score=136.27 Aligned_cols=155 Identities=19% Similarity=0.114 Sum_probs=109.9
Q ss_pred Cccchhcccccccccchhhhhhhhhc-CCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCc-cccC
Q 003086 530 KLRALMSTTKTAEVNNIASNLATKFS-ECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPP-SLKK 607 (849)
Q Consensus 530 ~lrsl~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~-~i~~ 607 (849)
.++.|.+.+ |.+....+..|. ++++|+.|+|++|.+.. ..+..|..+++|++|+|++| .+..+|. .+..
T Consensus 40 ~l~~L~Ls~-----N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~---i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~ 110 (361)
T 2xot_A 40 YTALLDLSH-----NNLSRLRAEWTPTRLTNLHSLLLSHNHLNF---ISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSD 110 (361)
T ss_dssp TCSEEECCS-----SCCCEECTTSSSSCCTTCCEEECCSSCCCE---ECTTTTTTCTTCCEEECCSS-CCCEECTTTTTT
T ss_pred CCCEEECCC-----CCCCccChhhhhhcccccCEEECCCCcCCc---cChhhccCCCCCCEEECCCC-cCCcCCHHHhCC
Confidence 345554444 334444555666 88889999999988872 33456888899999999988 6666665 5788
Q ss_pred CCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCcc-c---cccccccccCcccccCCCCCCCCCchhhhc
Q 003086 608 LKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKG-F---GKLLNLEVLLGFRPARSSQPEGCRISELKN 683 (849)
Q Consensus 608 L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~-i---~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~ 683 (849)
+++|++|+|++|......|..+.++++|++|++++|.+. .+|.. + +.+++|+.|++..+ .........+..
T Consensus 111 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N----~l~~l~~~~~~~ 185 (361)
T 2xot_A 111 LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSN----KLKKLPLTDLQK 185 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSS----CCCCCCHHHHHH
T ss_pred CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCC----CCCccCHHHhhh
Confidence 889999999887776666778888899999999988887 45544 3 56888888886555 334444556777
Q ss_pred ccc--ccceeeeeccCc
Q 003086 684 LTR--LRKLGLQLTCGD 698 (849)
Q Consensus 684 l~~--L~~L~l~~~~~~ 698 (849)
++. |+.|++.+|.+.
T Consensus 186 l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 186 LPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp SCHHHHTTEECCSSCEE
T ss_pred ccHhhcceEEecCCCcc
Confidence 776 477888887543
No 128
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.27 E-value=1.3e-11 Score=124.39 Aligned_cols=151 Identities=19% Similarity=0.123 Sum_probs=99.5
Q ss_pred ceEEecCCccccccccccccccCCCCccceEeccCCCCCccc-CccccCCCCCcEEeeccccCCccCChhhhcccCCcEe
Q 003086 560 LRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHL-PPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRAL 638 (849)
Q Consensus 560 Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 638 (849)
.+.++.+++.+. .+|..+. ++|++|+|++| .+..+ |..+..+++|++|+|++|......+..+..+++|++|
T Consensus 21 ~~~v~c~~~~l~----~ip~~~~--~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L 93 (229)
T 3e6j_A 21 GTTVDCRSKRHA----SVPAGIP--TNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVL 93 (229)
T ss_dssp TTEEECTTSCCS----SCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCEeEccCCCcC----ccCCCCC--CCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEE
Confidence 345666776665 5665443 77777888777 44444 5567777778888887665433333445777778888
Q ss_pred eccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCeEEEEe
Q 003086 639 DVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSISC 718 (849)
Q Consensus 639 ~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~ 718 (849)
++++|.+....+..++.+++|+.|++..+.. . ..+..+..+++|+.|++++|.+..+.+..+..+++|+.|+|++
T Consensus 94 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l----~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 94 DLGTNQLTVLPSAVFDRLVHLKELFMCCNKL----T-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCC----C-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred ECCCCcCCccChhHhCcchhhCeEeccCCcc----c-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 8877777644444467777777777655532 2 3345567777777777777777666666677777777777777
Q ss_pred ecCC
Q 003086 719 FDSH 722 (849)
Q Consensus 719 ~~~~ 722 (849)
|.+.
T Consensus 169 N~~~ 172 (229)
T 3e6j_A 169 NPWD 172 (229)
T ss_dssp SCBC
T ss_pred CCcc
Confidence 6544
No 129
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.27 E-value=1.3e-11 Score=123.56 Aligned_cols=132 Identities=13% Similarity=0.102 Sum_probs=107.4
Q ss_pred CcceEEecCCcccccccccc-c-cccCCCCccceEeccCCCCCcccCc-cccCCCCCcEEeeccccCCccCChhhhcccC
Q 003086 558 RYLRVLDISRSIFELPLKGL-L-SQTGSLQHLSYLCLSNTHPLIHLPP-SLKKLKNLQILDVSYCQNLKMLPSYVQSFIQ 634 (849)
Q Consensus 558 ~~Lr~L~L~~~~~~~~~~~~-p-~~~~~l~~Lr~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~ 634 (849)
..+++|+|++|.+. .+ | ..|+.+++|++|+|++| .+..+|. .+..+++|++|+|++|......|..+.++++
T Consensus 32 ~~~~~L~L~~N~l~----~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 106 (220)
T 2v70_A 32 QYTAELRLNNNEFT----VLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLES 106 (220)
T ss_dssp TTCSEEECCSSCCC----EECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSS
T ss_pred CCCCEEEcCCCcCC----ccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcC
Confidence 45689999999987 34 3 34789999999999999 6776665 7899999999999988776666667889999
Q ss_pred CcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCc
Q 003086 635 LRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGD 698 (849)
Q Consensus 635 L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 698 (849)
|++|++++|.+....|..++.+++|+.|++..+. .....+..+..+++|+.|++++|.+.
T Consensus 107 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~----l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 107 LKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ----ITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC----CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCEEECCCCcCCeECHhHcCCCccCCEEECCCCc----CCEECHHHhcCCCCCCEEEecCcCCc
Confidence 9999999999987778889999999999876653 34444567888999999999998654
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.27 E-value=8.2e-14 Score=159.51 Aligned_cols=196 Identities=23% Similarity=0.151 Sum_probs=100.8
Q ss_pred cCCCcceEEecCCccccccccccccccCCCCccceEeccCCC-------------CCcccCccccCCCCCcEEe-ecccc
Q 003086 555 SECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTH-------------PLIHLPPSLKKLKNLQILD-VSYCQ 620 (849)
Q Consensus 555 ~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~-------------~~~~lp~~i~~L~~L~~L~-L~~~~ 620 (849)
..+++|+.|+|++|.+. .+|..++.|++|+.|++++|. ..+..|..++.+.+|+.|+ ++.|.
T Consensus 346 ~~~~~L~~L~Ls~n~L~----~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~ 421 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST----VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 421 (567)
T ss_dssp STTTTSSSCCCCHHHHH----HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH
T ss_pred ccCccceeccCChhhHH----hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc
Confidence 55677778888888775 677788888888888876652 2233445556666666666 33221
Q ss_pred CCccCCh------hhhc--ccCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceee
Q 003086 621 NLKMLPS------YVQS--FIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGL 692 (849)
Q Consensus 621 ~~~~lp~------~i~~--l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 692 (849)
...++. .+.. ...|+.|++++|.+. .+|. ++.+++|+.|+ +
T Consensus 422 -~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~----------------------------L 470 (567)
T 1dce_A 422 -LDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLD----------------------------L 470 (567)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC-GGGGTTCCEEE----------------------------C
T ss_pred -cchhhhhhhhcccccccCccCceEEEecCCCCC-CCcC-ccccccCcEee----------------------------c
Confidence 111111 1111 113555555555544 2333 44444444444 4
Q ss_pred eeccCcccchHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCC--CCcCCCCCCCCCceEEEe
Q 003086 693 QLTCGDEIEEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTS--PVWLNPASLPMLRYLSVC 770 (849)
Q Consensus 693 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~--p~~~~~~~l~~L~~L~L~ 770 (849)
++|.++.+ +..+..+++|+.|+|++|.+++. +.+..+++|+.|+++++..... |..+ +.+++|+.|+|+
T Consensus 471 s~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~l------p~l~~l~~L~~L~Ls~N~l~~~~~p~~l--~~l~~L~~L~L~ 541 (567)
T 1dce_A 471 SHNRLRAL-PPALAALRCLEVLQASDNALENV------DGVANLPRLQELLLCNNRLQQSAAIQPL--VSCPRLVLLNLQ 541 (567)
T ss_dssp CSSCCCCC-CGGGGGCTTCCEEECCSSCCCCC------GGGTTCSSCCEEECCSSCCCSSSTTGGG--GGCTTCCEEECT
T ss_pred Cccccccc-chhhhcCCCCCEEECCCCCCCCC------cccCCCCCCcEEECCCCCCCCCCCcHHH--hcCCCCCEEEec
Confidence 44443322 22344444444444444443321 1233344455555544333222 4444 667888888888
Q ss_pred eCCccccccccccC-cccccccceee
Q 003086 771 SGNLSKMHDSFWGE-NNTVWKIEALL 795 (849)
Q Consensus 771 ~n~l~~~~~~~~~~-~~fp~~L~~L~ 795 (849)
+|.++..++..... ..+| +|+.|+
T Consensus 542 ~N~l~~~~~~~~~l~~~lp-~L~~L~ 566 (567)
T 1dce_A 542 GNSLCQEEGIQERLAEMLP-SVSSIL 566 (567)
T ss_dssp TSGGGGSSSCTTHHHHHCT-TCSEEE
T ss_pred CCcCCCCccHHHHHHHHCc-ccCccC
Confidence 88777665432111 1355 666653
No 131
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.27 E-value=1.7e-11 Score=122.70 Aligned_cols=152 Identities=16% Similarity=0.185 Sum_probs=109.8
Q ss_pred ceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCccccccccccccCcccc
Q 003086 588 SYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRP 667 (849)
Q Consensus 588 r~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~ 667 (849)
+.++++++ .+..+|..+. .+|+.|++++|......+..+..+++|+.|++++|.+....|..+..+++|+.|++..+
T Consensus 14 ~~v~c~~~-~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGK-GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTS-CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCC-CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 67889888 8889998665 68999999988766655668899999999999999988666777888888888876555
Q ss_pred cCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEecc
Q 003086 668 ARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFY 747 (849)
Q Consensus 668 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~ 747 (849)
.. .......+..+++|+.|++++|.+....+..+..+++|+.|+|++|.++..
T Consensus 91 ~l----~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----------------------- 143 (220)
T 2v9t_B 91 KI----TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI----------------------- 143 (220)
T ss_dssp CC----CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-----------------------
T ss_pred cC----CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEE-----------------------
Confidence 32 222233456777777777777777666666677777777777776644321
Q ss_pred CCCCCCCcCCCCCCCCCceEEEeeCCcc
Q 003086 748 PGKTSPVWLNPASLPMLRYLSVCSGNLS 775 (849)
Q Consensus 748 ~~~~~p~~~~~~~l~~L~~L~L~~n~l~ 775 (849)
.+..+ ..+++|+.|+|++|.+.
T Consensus 144 ----~~~~~--~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 144 ----AKGTF--SPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp ----CTTTT--TTCTTCCEEECCSSCEE
T ss_pred ----CHHHH--hCCCCCCEEEeCCCCcC
Confidence 12233 56777888888877664
No 132
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.25 E-value=1.1e-10 Score=117.27 Aligned_cols=185 Identities=11% Similarity=-0.007 Sum_probs=118.4
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccC-ceEEEEeCCccCHHHHHHHHHHHh
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFE-RRMWVSVSQTFTEEQIMRSMLRNL 239 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l 239 (849)
.+++|+++.++.+.+++.... .+.+.|+|++|+|||++|+.+++... ...+. ..+.+..+.......+...+....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKIKEFA 93 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHHHHHHh
Confidence 468999999999999998754 23489999999999999999987311 11221 233444443333322222221111
Q ss_pred cCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEecchh-hhhhccccccccccC
Q 003086 240 GDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITTRNGK-VSQKMGVKKARMHFP 317 (849)
Q Consensus 240 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTtr~~~-v~~~~~~~~~~~~~l 317 (849)
.... ...+++.+||+||++......++.+...+.... +..+|+||+... +........ ..+++
T Consensus 94 ~~~~--------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~-~~i~~ 158 (226)
T 2chg_A 94 RTAP--------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC-AVFRF 158 (226)
T ss_dssp TSCC--------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS-EEEEC
T ss_pred cccC--------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhC-ceeec
Confidence 1000 012578899999998866666777776665444 778888887643 111111111 47889
Q ss_pred CCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHh
Q 003086 318 KFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVG 368 (849)
Q Consensus 318 ~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~ 368 (849)
.+++.++..+++.+.+..... .-..+..+.|++.++|.|..+..+.
T Consensus 159 ~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 159 KPVPKEAMKKRLLEICEKEGV-----KITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp CCCCHHHHHHHHHHHHHHHTC-----CBCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999999999988743221 1224667789999999999655443
No 133
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.24 E-value=4.1e-11 Score=136.42 Aligned_cols=175 Identities=16% Similarity=0.115 Sum_probs=134.1
Q ss_pred ccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCccccccccccccCcc
Q 003086 586 HLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGF 665 (849)
Q Consensus 586 ~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~ 665 (849)
+|++|+|++| .+..+|..+. ++|++|+|++|.. ..+| ..+++|++|++++|.+.+ +|. ++. +|+.|++.
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~l~--~~L~~L~Ls~N~l-~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDNLP--PQITVLEITQNAL-ISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSS-CCSCCCSCCC--TTCSEEECCSSCC-SCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCC-CCCccCHhHc--CCCCEEECcCCCC-cccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 8999999999 7888998764 7999999997764 4788 568999999999999884 777 665 89999877
Q ss_pred cccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEe
Q 003086 666 RPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLN 745 (849)
Q Consensus 666 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~ 745 (849)
.+... + .+. .+++|+.|++++|.++.++. .+++|+.|+|++|.++... . +. ++|+.|+++
T Consensus 129 ~N~l~----~-lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp---~---l~--~~L~~L~Ls 188 (571)
T 3cvr_A 129 NNQLT----M-LPE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLP---E---LP--ESLEALDVS 188 (571)
T ss_dssp SSCCS----C-CCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCC---C---CC--TTCCEEECC
T ss_pred CCcCC----C-CCC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcc---h---hh--CCCCEEECc
Confidence 66432 2 222 68899999999998877553 5789999999999876521 1 22 799999999
Q ss_pred ccCCCCCCCcCCCCCCCCC-------ceEEEeeCCccccccccccCcccccccceeeccccc
Q 003086 746 FYPGKTSPVWLNPASLPML-------RYLSVCSGNLSKMHDSFWGENNTVWKIEALLFESLS 800 (849)
Q Consensus 746 ~~~~~~~p~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~~~fp~~L~~L~l~~l~ 800 (849)
++....+|. + .. +| +.|+|++|.|+.++..+.. ++ +|+.|++.+.+
T Consensus 189 ~N~L~~lp~-~--~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~---l~-~L~~L~L~~N~ 241 (571)
T 3cvr_A 189 TNLLESLPA-V--PV--RNHHSEETEIFFRCRENRITHIPENILS---LD-PTCTIILEDNP 241 (571)
T ss_dssp SSCCSSCCC-C--C----------CCEEEECCSSCCCCCCGGGGG---SC-TTEEEECCSSS
T ss_pred CCCCCchhh-H--HH--hhhcccccceEEecCCCcceecCHHHhc---CC-CCCEEEeeCCc
Confidence 886666665 4 22 56 9999999999988765543 55 78888777643
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.23 E-value=1.3e-11 Score=115.17 Aligned_cols=109 Identities=21% Similarity=0.156 Sum_probs=84.0
Q ss_pred cCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcccC
Q 003086 555 SECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQ 634 (849)
Q Consensus 555 ~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~ 634 (849)
...+.|+.|++++|.+.. ..+|..++.+++|++|++++| .+..+ ..++.+++|++|++++|.....+|..+..+++
T Consensus 14 ~~~~~l~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNE--GKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89 (149)
T ss_dssp CCGGGCSEEECTTCBCBT--TBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred CCCccCeEEEccCCcCCh--hHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence 345789999999998861 157778889999999999999 77777 66889999999999988766668888888999
Q ss_pred CcEeeccCCCCccc-cCccccccccccccCcccc
Q 003086 635 LRALDVTHCGSLQY-LPKGFGKLLNLEVLLGFRP 667 (849)
Q Consensus 635 L~~L~l~~~~~~~~-~p~~i~~l~~L~~L~~~~~ 667 (849)
|++|++++|.+.+. .+..++.+++|+.|++.++
T Consensus 90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence 99999999987632 2255566666666655444
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.18 E-value=5.6e-11 Score=116.10 Aligned_cols=96 Identities=17% Similarity=0.160 Sum_probs=57.8
Q ss_pred eEEecCCccccccccccccccCCCCccceEeccCCCCCcccCcc--ccCCCCCcEEeeccccCCccCChhhhcccCCcEe
Q 003086 561 RVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPS--LKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRAL 638 (849)
Q Consensus 561 r~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~--i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 638 (849)
++++++++.+. .+|..+.. +|++|+|++| .+..+|.. ++.+++|++|+|++|......|..+.++++|++|
T Consensus 11 ~~l~~s~~~l~----~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGRGLK----EIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL 83 (192)
T ss_dssp TEEECTTSCCS----SCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CEEEcCCCCcC----cCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEE
Confidence 56667776664 45654433 6677777777 55655543 6667777777777666555556666677777777
Q ss_pred eccCCCCccccCccccccccccccC
Q 003086 639 DVTHCGSLQYLPKGFGKLLNLEVLL 663 (849)
Q Consensus 639 ~l~~~~~~~~~p~~i~~l~~L~~L~ 663 (849)
++++|.+.+..|..++.+++|+.|+
T Consensus 84 ~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 84 QLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp ECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEE
Confidence 7777666543333344444444443
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.16 E-value=5e-12 Score=149.42 Aligned_cols=122 Identities=22% Similarity=0.169 Sum_probs=101.0
Q ss_pred ccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCccccc
Q 003086 576 GLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFGK 655 (849)
Q Consensus 576 ~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~ 655 (849)
..|..+..+.+|++|+|++| .+..+|..+..+++|++|+|++|.+. .+|..|++|++|++|+|++|.+. .+|..|+.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 45678899999999999999 78899999999999999999977655 89999999999999999999988 88999999
Q ss_pred cccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhh
Q 003086 656 LLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDAL 705 (849)
Q Consensus 656 l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l 705 (849)
|++|+.|++..+.. ...+..+++|++|+.|+|++|.++...+..+
T Consensus 292 l~~L~~L~L~~N~l-----~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 292 CFQLKYFYFFDNMV-----TTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp GTTCSEEECCSSCC-----CCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCCCCEEECCCCCC-----CccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 99999999877642 2345569999999999999998887665444
No 137
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.16 E-value=3.1e-11 Score=115.19 Aligned_cols=133 Identities=18% Similarity=0.127 Sum_probs=98.7
Q ss_pred CCCCccceEeccCCCCCc--ccCccccCCCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCccccccccc
Q 003086 582 GSLQHLSYLCLSNTHPLI--HLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNL 659 (849)
Q Consensus 582 ~~l~~Lr~L~L~~~~~~~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L 659 (849)
...++|++|+|++| .+. .+|..+..+++|++|++++|... .+ ..+..+++|++|++++|.+...+|..++.+++|
T Consensus 21 ~~~~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 21 RTPAAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp SCTTSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESSCCC-CC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred CCcccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 34588999999999 676 89988899999999999987744 44 678899999999999999875566666667888
Q ss_pred cccCcccccCCCCCCCC-CchhhhccccccceeeeeccCcccch---HhhcCCCCCCeEEEEeecC
Q 003086 660 EVLLGFRPARSSQPEGC-RISELKNLTRLRKLGLQLTCGDEIEE---DALVNLRELQFLSISCFDS 721 (849)
Q Consensus 660 ~~L~~~~~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~L~~~~~ 721 (849)
+.|++..+.. ... .+..+..+++|+.|++++|.+....+ ..+..+++|+.|+++.|..
T Consensus 98 ~~L~Ls~N~l----~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 98 THLNLSGNKL----KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CEEECBSSSC----CSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred CEEeccCCcc----CcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 8887665532 221 12456777777778887776665544 4667777777777776643
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.16 E-value=1.1e-10 Score=114.06 Aligned_cols=97 Identities=20% Similarity=0.197 Sum_probs=62.0
Q ss_pred eEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcccCCcEeec
Q 003086 561 RVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDV 640 (849)
Q Consensus 561 r~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l 640 (849)
++++++++.+. .+|..+. .+|++|+|++| .+..+|..+..+++|++|+|++|......|..|.++++|++|++
T Consensus 13 ~~l~~~~~~l~----~ip~~~~--~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCSNKGLK----VLPKGIP--RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL 85 (193)
T ss_dssp TEEECTTSCCS----SCCSCCC--TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCCC----cCCCCCC--CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence 46677777665 5565443 56777777777 66677777777777777777766655555556777777777777
Q ss_pred cCCCCccccCccccccccccccCc
Q 003086 641 THCGSLQYLPKGFGKLLNLEVLLG 664 (849)
Q Consensus 641 ~~~~~~~~~p~~i~~l~~L~~L~~ 664 (849)
++|.+....|..++.+++|+.|++
T Consensus 86 s~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 86 SYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCccCEeCHHHhCCCCCCCEEEC
Confidence 777665433334444444444443
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.16 E-value=8.7e-12 Score=142.74 Aligned_cols=161 Identities=21% Similarity=0.194 Sum_probs=93.6
Q ss_pred hhhhhhcCCCcceEEecCCcc-------------ccccccccccccCCCCccceEe-ccCCCCCcccCc------cccC-
Q 003086 549 NLATKFSECRYLRVLDISRSI-------------FELPLKGLLSQTGSLQHLSYLC-LSNTHPLIHLPP------SLKK- 607 (849)
Q Consensus 549 ~~~~~~~~l~~Lr~L~L~~~~-------------~~~~~~~~p~~~~~l~~Lr~L~-L~~~~~~~~lp~------~i~~- 607 (849)
.+|..+++++.|+.|++++|. .. ...|..++.+++|+.|+ ++.| .+..++. .+..
T Consensus 363 ~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~---~~~~~~l~~l~~L~~L~~l~~n-~~~~L~~l~l~~n~i~~l 438 (567)
T 1dce_A 363 VLQSELESCKELQELEPENKWCLLTIILLMRALDPL---LYEKETLQYFSTLKAVDPMRAA-YLDDLRSKFLLENSVLKM 438 (567)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTG---GGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccc---cCCHHHHHHHHhcccCcchhhc-ccchhhhhhhhccccccc
Confidence 566667777777777776553 11 13445566666666666 4443 2222221 0111
Q ss_pred -CCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhcccc
Q 003086 608 -LKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTR 686 (849)
Q Consensus 608 -L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~ 686 (849)
...|++|+|++|. +..+|. ++++++|+.|++++|.+. .+|..++.+++|+.|++..+.. .+ .+ .++.+++
T Consensus 439 ~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l----~~-lp-~l~~l~~ 509 (567)
T 1dce_A 439 EYADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL----EN-VD-GVANLPR 509 (567)
T ss_dssp HHTTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCC----CC-CG-GGTTCSS
T ss_pred CccCceEEEecCCC-CCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCC----CC-Cc-ccCCCCC
Confidence 1246667776553 334565 666777777777776666 6666666777777766554422 22 22 5666777
Q ss_pred ccceeeeeccCcccc-hHhhcCCCCCCeEEEEeecCC
Q 003086 687 LRKLGLQLTCGDEIE-EDALVNLRELQFLSISCFDSH 722 (849)
Q Consensus 687 L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~L~~~~~~ 722 (849)
|+.|++++|.++... +..+..+++|+.|+|++|.++
T Consensus 510 L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 510 LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp CCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 777777777666654 566667777777777766554
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.14 E-value=8.1e-11 Score=113.23 Aligned_cols=130 Identities=17% Similarity=0.165 Sum_probs=91.1
Q ss_pred hhcCCCcceEEecCCccccccccccccccCCCC-ccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCC-hhhh
Q 003086 553 KFSECRYLRVLDISRSIFELPLKGLLSQTGSLQ-HLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLP-SYVQ 630 (849)
Q Consensus 553 ~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~-~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp-~~i~ 630 (849)
.|.++..|+.|++++|.+. .+|. +..+. +|++|+|++| .+..+ ..++.+++|++|++++|... .+| ..+.
T Consensus 14 ~~~~~~~L~~L~l~~n~l~----~i~~-~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~ 85 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP----VIEN-LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQ 85 (176)
T ss_dssp EEECTTSCEEEECTTSCCC----SCCC-GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCC-EECSCHHH
T ss_pred hcCCcCCceEEEeeCCCCc----hhHH-hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCccc-ccCcchhh
Confidence 4677889999999999987 4443 55555 9999999999 77777 56899999999999977655 455 4458
Q ss_pred cccCCcEeeccCCCCccccCc--cccccccccccCcccccCCCCCCCCCch----hhhccccccceeeeecc
Q 003086 631 SFIQLRALDVTHCGSLQYLPK--GFGKLLNLEVLLGFRPARSSQPEGCRIS----ELKNLTRLRKLGLQLTC 696 (849)
Q Consensus 631 ~l~~L~~L~l~~~~~~~~~p~--~i~~l~~L~~L~~~~~~~~~~~~~~~~~----~l~~l~~L~~L~l~~~~ 696 (849)
.+++|++|++++|.+. .+|. .++.+++|+.|++.++... ..+. .+..+++|+.|+++.|.
T Consensus 86 ~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-----~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 86 ALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-----NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-----GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-----CcHhHHHHHHHHCCccceeCCCcCC
Confidence 9999999999999875 4554 4556666666665444211 1111 24555555555555553
No 141
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.11 E-value=1.1e-09 Score=116.63 Aligned_cols=274 Identities=15% Similarity=0.098 Sum_probs=146.4
Q ss_pred CccccccccHHHHHHHHhcc---CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEA---EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLR 237 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 237 (849)
.+++|++..++.+..++... ......|.|+|++|+|||++|+.+++. ... ..++++++......++.
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~---~~~~~~~~~~~~~~~l~----- 81 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGV---NLRVTSGPAIEKPGDLA----- 81 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHH--HTC---CEEEECTTTCCSHHHHH-----
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEeccccCChHHHH-----
Confidence 46999999999988887632 223457889999999999999999873 221 23455444332222211
Q ss_pred HhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCC-------------------CCceEEEEe
Q 003086 238 NLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKG-------------------KGSSIIITT 298 (849)
Q Consensus 238 ~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~-------------------~~s~ilvTt 298 (849)
..+... ..+..+|+|||+........+.+...+... .+..+|.||
T Consensus 82 ---------------~~l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t 145 (324)
T 1hqc_A 82 ---------------AILANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGAT 145 (324)
T ss_dssp ---------------HHHTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEE
T ss_pred ---------------HHHHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeC
Confidence 111110 135679999999876555555555443221 124566666
Q ss_pred cchh-hhhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHhhhhhc----
Q 003086 299 RNGK-VSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVGGMMLY---- 373 (849)
Q Consensus 299 r~~~-v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l~~---- 373 (849)
.... +...+.......+.+.+++.++..+++.+.+.... ..-.++..+.+++.++|.|-.+..+...+..
T Consensus 146 ~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~-----~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~ 220 (324)
T 1hqc_A 146 TRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG-----VRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQV 220 (324)
T ss_dssp SCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTT-----CCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTT
T ss_pred CCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 5432 11111111114788999999999999988874322 1223567788999999999887666544321
Q ss_pred --C-CCChHHHHHHHHhhhhhhccC---CchHHHHHHHhhhCCChhhHHHHHHhccCCCCccccHHHHH----HHhHhcC
Q 003086 374 --K-PPTYNEWRRTADNFRDELAEN---DDSVMASLQLSYDELPPYLKSCFLSFSVYPEDCVIRKEQLV----YWWIGEG 443 (849)
Q Consensus 374 --~-~~~~~~w~~~~~~~~~~~~~~---~~~~~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li----~~wia~g 443 (849)
. .-+.+....++.........- +..+...+.-.|..=+.....+-..++ +++..+. .+-+..|
T Consensus 221 ~~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lg-------i~~~tl~~~l~~~~i~~~ 293 (324)
T 1hqc_A 221 AGEEVITRERALEALAALGLDELGLEKRDREILEVLILRFGGGPVGLATLATALS-------EDPGTLEEVHEPYLIRQG 293 (324)
T ss_dssp TSCSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTT-------SCHHHHHHHTHHHHHHTT
T ss_pred hcCCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhC-------CCHHHHHHHHhHHHHHhc
Confidence 1 123444444443321110000 001111111111111111222222222 2333332 2345678
Q ss_pred CCcC-CCCCCHHHHHHHHHH-hhhhccceEE
Q 003086 444 FVPQ-RNGRSSIEAGEDCFS-GLTNRCLVEV 472 (849)
Q Consensus 444 ~i~~-~~~~~~e~~~~~~~~-~L~~~~ll~~ 472 (849)
++.. ..+....+.|.+||+ ++.+|+|||+
T Consensus 294 li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 294 LLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp SEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred chhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 8853 445667788889998 9999999885
No 142
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.11 E-value=3.9e-11 Score=111.96 Aligned_cols=128 Identities=18% Similarity=0.134 Sum_probs=96.3
Q ss_pred CCCccceEeccCCCCCc--ccCccccCCCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCcccccccccc
Q 003086 583 SLQHLSYLCLSNTHPLI--HLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLE 660 (849)
Q Consensus 583 ~l~~Lr~L~L~~~~~~~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 660 (849)
..++|++|++++| .+. .+|..+..+++|++|++++|.... + ..+.++++|++|++++|.+.+.+|..++.+++|+
T Consensus 15 ~~~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVGLTS-I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSCCCC-C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCCCCC-c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 4588999999999 666 899888999999999999876444 4 6788999999999999998755776677788888
Q ss_pred ccCcccccCCCCCCCC-CchhhhccccccceeeeeccCcccch---HhhcCCCCCCeEEEE
Q 003086 661 VLLGFRPARSSQPEGC-RISELKNLTRLRKLGLQLTCGDEIEE---DALVNLRELQFLSIS 717 (849)
Q Consensus 661 ~L~~~~~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~L~ 717 (849)
.|++..+.. ... .+..+..+++|+.|++++|.+....+ ..+..+++|+.|+++
T Consensus 92 ~L~ls~N~i----~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKI----KDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCC----CSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcC----CChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 887665531 221 12457777888888888877665554 456777777777653
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.08 E-value=1.6e-10 Score=112.80 Aligned_cols=131 Identities=11% Similarity=0.037 Sum_probs=106.1
Q ss_pred cceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCCh-hhhcccCCcEeeccCCCCccccCccccccccccccCcc
Q 003086 587 LSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPS-YVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGF 665 (849)
Q Consensus 587 Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~ 665 (849)
-++++++++ .++.+|..+.. +|++|++++|......+. .+.++++|++|++++|.+.+..|..++.+++|+.|++.
T Consensus 10 ~~~l~~s~~-~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 10 GTTVDCTGR-GLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTS-CCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCC-CcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 379999999 88999987654 899999997765444443 48999999999999999987778889999999999876
Q ss_pred cccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCeEEEEeecCCCC
Q 003086 666 RPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSISCFDSHGS 724 (849)
Q Consensus 666 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 724 (849)
.+. .....+..+..+++|+.|++++|.++...+..+..+++|+.|+|++|.+...
T Consensus 87 ~N~----l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 87 ENK----IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp SCC----CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCc----CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 653 3444445578889999999999988887777888889999999988876543
No 144
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.04 E-value=8.6e-10 Score=117.54 Aligned_cols=185 Identities=12% Similarity=0.128 Sum_probs=116.4
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccC-ceEEEEeCCccCHHHHHHHHHHHh
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFE-RRMWVSVSQTFTEEQIMRSMLRNL 239 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l 239 (849)
.+++|++..++.+.+++..+. .+.+.|+|++|+||||+|+.+++... ...+. ..++++.+.......+ ++++..+
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~ 96 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGIDVV-RNQIKHF 96 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHHHH-HTHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChHHH-HHHHHHH
Confidence 468999999999999988754 23389999999999999999987311 11111 2344444332222221 1222211
Q ss_pred cCCCCCCCHHHHHHHHHHHh-cCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEecchh-hhhhcccccccccc
Q 003086 240 GDASAGDDRGELLRKINQYL-LGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITTRNGK-VSQKMGVKKARMHF 316 (849)
Q Consensus 240 ~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTtr~~~-v~~~~~~~~~~~~~ 316 (849)
..... .+ .+++.++|+||++......++.+...+.... ++.+|+||+... +...+.... ..++
T Consensus 97 ~~~~~-------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~-~~i~ 162 (323)
T 1sxj_B 97 AQKKL-------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC-AILR 162 (323)
T ss_dssp HHBCC-------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS-EEEE
T ss_pred Hhccc-------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc-eEEe
Confidence 10000 01 3568899999998866666666666665444 778888886532 222222222 4789
Q ss_pred CCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhH-HHHHh
Q 003086 317 PKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLA-IKAVG 368 (849)
Q Consensus 317 l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLa-i~~~~ 368 (849)
+.+++.++..+++...+..... .-.++....|++.|+|.|.. +..+.
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 163 YSKLSDEDVLKRLLQIIKLEDV-----KYTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTC-----CBCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999999999987643211 12246678899999999954 44443
No 145
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.04 E-value=5.4e-10 Score=109.06 Aligned_cols=128 Identities=19% Similarity=0.190 Sum_probs=104.3
Q ss_pred cceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCccccccccccccCccc
Q 003086 587 LSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFR 666 (849)
Q Consensus 587 Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~ 666 (849)
-++++++++ .+..+|..+. .+|++|++++|. +..+|..+.++++|++|++++|.+....+..|..+++|++|++..
T Consensus 12 ~~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 12 DTVVRCSNK-GLKVLPKGIP--RDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TTEEECTTS-CCSSCCSCCC--TTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCC-CCCcCCCCCC--CCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 368999999 8899997654 689999999765 568889999999999999999999866666788999999998766
Q ss_pred ccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCCCCCCeEEEEeecCC
Q 003086 667 PARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSISCFDSH 722 (849)
Q Consensus 667 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 722 (849)
+. .....+..+..+++|+.|++++|.++.+.+..+..+++|+.|+|++|.+.
T Consensus 88 N~----l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NR----LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SC----CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred Cc----cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 53 34444556888899999999999888777777888889999998877543
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.04 E-value=5.1e-12 Score=124.31 Aligned_cols=107 Identities=21% Similarity=0.229 Sum_probs=67.3
Q ss_pred hcCCCcceEEecCCcccccc---ccccccccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhh
Q 003086 554 FSECRYLRVLDISRSIFELP---LKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQ 630 (849)
Q Consensus 554 ~~~l~~Lr~L~L~~~~~~~~---~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~ 630 (849)
+.....++.++++.+.+.+. +..+|..++.+++|++|+|++| .+..+| .+..+++|++|++++|. +..+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNL-IKKIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCC-cccccchhh
Confidence 44555666666666665531 1233346777788888888877 666677 67777888888887665 346777777
Q ss_pred cccCCcEeeccCCCCccccCccccccccccccCcc
Q 003086 631 SFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGF 665 (849)
Q Consensus 631 ~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~ 665 (849)
.+++|++|++++|.+. .+| .++.+++|+.|++.
T Consensus 91 ~~~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~l~ 123 (198)
T 1ds9_A 91 VADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMS 123 (198)
T ss_dssp HHHHCSEEEEEEEECC-CHH-HHHHHHHSSEEEES
T ss_pred cCCcCCEEECcCCcCC-cCC-ccccCCCCCEEECC
Confidence 7777888877777655 233 34444444444433
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.03 E-value=5.4e-10 Score=119.37 Aligned_cols=98 Identities=13% Similarity=0.208 Sum_probs=58.2
Q ss_pred CCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCc-cccC--------CCCCcEEeeccccCCccCCh
Q 003086 557 CRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPP-SLKK--------LKNLQILDVSYCQNLKMLPS 627 (849)
Q Consensus 557 l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~-~i~~--------L~~L~~L~L~~~~~~~~lp~ 627 (849)
+++|++|||++|.+.. ....-+.++.++++.+..+ .+|. .|.+ +.+|+.|+|.. .....-+.
T Consensus 48 l~~L~~LdLs~n~i~~----~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~ 118 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKM----YSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDA 118 (329)
T ss_dssp CTTCCEEEEEEEEECC----EEESSSSSGGGCCEEECTT----EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTT
T ss_pred hccCeEEecCcceeEE----ecCcccccccccccccccc----ccCHHHhcccccccccccCCCcEEECCc-cccchhHH
Confidence 7889999999998861 1111122333555555554 2332 3455 77888888874 33333344
Q ss_pred hhhcccCCcEeeccCCCCccccCccccccccccccC
Q 003086 628 YVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLL 663 (849)
Q Consensus 628 ~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 663 (849)
.|.++++|+.|+++.|.+....+..|..+.++..+.
T Consensus 119 aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~ 154 (329)
T 3sb4_A 119 AFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIP 154 (329)
T ss_dssp TTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEEC
T ss_pred HhhcCcccceEEcCCCCccccchhhhcCCCceEEec
Confidence 577778888888877776544455566655555554
No 148
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.99 E-value=4e-10 Score=108.36 Aligned_cols=133 Identities=15% Similarity=0.067 Sum_probs=103.7
Q ss_pred cccCCCCccceEeccCCCCCcccCccccCCC-CCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCcc-cccc
Q 003086 579 SQTGSLQHLSYLCLSNTHPLIHLPPSLKKLK-NLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKG-FGKL 656 (849)
Q Consensus 579 ~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~-~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l 656 (849)
..+..+.+|++|++++| .+..+|. +..+. +|++|++++|.... + ..+..+++|++|++++|.+. .+|.. ++.+
T Consensus 13 ~~~~~~~~L~~L~l~~n-~l~~i~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l 87 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGY-KIPVIEN-LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQAL 87 (176)
T ss_dssp CEEECTTSCEEEECTTS-CCCSCCC-GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCC-EECSCHHHHC
T ss_pred HhcCCcCCceEEEeeCC-CCchhHH-hhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCccc-ccCcchhhcC
Confidence 34667899999999999 7888876 55554 99999999876544 4 56889999999999999988 55655 4899
Q ss_pred ccccccCcccccCCCCCCCCC-chhhhccccccceeeeeccCcccchH---hhcCCCCCCeEEEEeec
Q 003086 657 LNLEVLLGFRPARSSQPEGCR-ISELKNLTRLRKLGLQLTCGDEIEED---ALVNLRELQFLSISCFD 720 (849)
Q Consensus 657 ~~L~~L~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~---~l~~~~~L~~L~L~~~~ 720 (849)
++|+.|++..+.. .... ...+..+++|+.|++++|.+...... .+..+++|+.|+++.|.
T Consensus 88 ~~L~~L~L~~N~i----~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 88 PDLTELILTNNSL----VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp TTCCEEECCSCCC----CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCEEECCCCcC----CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 9999999776642 1111 23688899999999999987655432 57889999999998874
No 149
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.96 E-value=1.8e-09 Score=103.82 Aligned_cols=100 Identities=18% Similarity=0.096 Sum_probs=68.0
Q ss_pred ceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCc-cccCCCCCcEEeeccccCCccCChhhhcccCCcEe
Q 003086 560 LRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPP-SLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRAL 638 (849)
Q Consensus 560 Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 638 (849)
.+.++++++.+. .+|..+ .++|++|+|++| .+..+|. .++.+++|++|++++|......+..+..+++|++|
T Consensus 9 ~~~l~~~~~~l~----~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (177)
T 2o6r_A 9 GTEIRCNSKGLT----SVPTGI--PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTIL 81 (177)
T ss_dssp TTEEECCSSCCS----SCCTTC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCEEEecCCCCc----cCCCCC--CCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEE
Confidence 567888888876 566544 368888888888 5666665 45788888888888776554444456788888888
Q ss_pred eccCCCCccccCccccccccccccCccc
Q 003086 639 DVTHCGSLQYLPKGFGKLLNLEVLLGFR 666 (849)
Q Consensus 639 ~l~~~~~~~~~p~~i~~l~~L~~L~~~~ 666 (849)
++++|.+.+..+..++.+++|+.|++..
T Consensus 82 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 109 (177)
T 2o6r_A 82 YLHENKLQSLPNGVFDKLTQLKELALDT 109 (177)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ECCCCCccccCHHHhhCCcccCEEECcC
Confidence 8888877633333345555555555433
No 150
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.94 E-value=3.7e-09 Score=101.63 Aligned_cols=106 Identities=18% Similarity=0.165 Sum_probs=78.5
Q ss_pred CcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCcc-ccCCCCCcEEeeccccCCccCChhhhcccCCc
Q 003086 558 RYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPS-LKKLKNLQILDVSYCQNLKMLPSYVQSFIQLR 636 (849)
Q Consensus 558 ~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 636 (849)
++|+.|++++|.+.. ..+..++.+++|++|+|++| .+..+|.. +..+++|++|++++|......+..+.++++|+
T Consensus 28 ~~l~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 103 (177)
T 2o6r_A 28 SSATRLELESNKLQS---LPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLK 103 (177)
T ss_dssp TTCSEEECCSSCCCC---CCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCcEEEeCCCcccE---eCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccC
Confidence 688999999998862 23345688899999999998 67777654 58889999999997765555555578889999
Q ss_pred EeeccCCCCccccCccccccccccccCcccc
Q 003086 637 ALDVTHCGSLQYLPKGFGKLLNLEVLLGFRP 667 (849)
Q Consensus 637 ~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~ 667 (849)
+|++++|.+....+..+..+++|+.|++..+
T Consensus 104 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 104 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 9999998877333333566777777765444
No 151
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.91 E-value=5e-09 Score=111.76 Aligned_cols=184 Identities=13% Similarity=0.078 Sum_probs=117.2
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcc-c-CceEEEEeCCccCHHHHHHHHHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENW-F-ERRMWVSVSQTFTEEQIMRSMLRN 238 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-f-~~~~wv~~s~~~~~~~~~~~i~~~ 238 (849)
.+++|++..++.+..++..+. .+.+.|+|++|+||||+|+.+++. .... + ...+.+..+....... .+..+
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~-~~~~~-- 97 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNASDERGINV-IREKV-- 97 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETTCHHHHHT-THHHH--
T ss_pred HHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeeccccCchHH-HHHHH--
Confidence 468999999999999888753 334899999999999999999873 2111 1 1133343332111111 01111
Q ss_pred hcCCCCCCCHHHHHHHHHHH--h-cCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEecchh-hhhhccccccc
Q 003086 239 LGDASAGDDRGELLRKINQY--L-LGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITTRNGK-VSQKMGVKKAR 313 (849)
Q Consensus 239 l~~~~~~~~~~~~~~~l~~~--l-~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTtr~~~-v~~~~~~~~~~ 313 (849)
...... + .+++.++|+||++......++.+...+.... ++++|+||.... +........ .
T Consensus 98 --------------~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~-~ 162 (327)
T 1iqp_A 98 --------------KEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC-A 162 (327)
T ss_dssp --------------HHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTE-E
T ss_pred --------------HHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhC-c
Confidence 111110 1 2568899999998866777777777765544 778888886532 211111111 4
Q ss_pred cccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHhhhh
Q 003086 314 MHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVGGMM 371 (849)
Q Consensus 314 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l 371 (849)
.+.+.+++.++..+++.+.+.... ..-.++..+.|++.++|.|..+..+...+
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~-----~~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 163 IFRFRPLRDEDIAKRLRYIAENEG-----LELTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTT-----CEECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 688999999999999988874321 12235677889999999998765554433
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.86 E-value=5.4e-09 Score=99.63 Aligned_cols=101 Identities=17% Similarity=0.169 Sum_probs=63.3
Q ss_pred ceEEecCCccccccccccccccCCCCccceEeccCCCCCccc-CccccCCCCCcEEeeccccCCccCChhhhcccCCcEe
Q 003086 560 LRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHL-PPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRAL 638 (849)
Q Consensus 560 Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 638 (849)
.+++++++|.+. .+|..+. ++|++|+|++| .+..+ |..+..+++|++|+|++|......|..+.++++|++|
T Consensus 11 ~~~l~~s~n~l~----~ip~~~~--~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 83 (170)
T 3g39_A 11 GTTVDCSGKSLA----SVPTGIP--TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL 83 (170)
T ss_dssp TTEEECTTSCCS----SCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCEEEeCCCCcC----ccCccCC--CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEE
Confidence 456777777765 5665553 67777777777 55555 4556777777777777665443333445677777777
Q ss_pred eccCCCCccccCccccccccccccCcccc
Q 003086 639 DVTHCGSLQYLPKGFGKLLNLEVLLGFRP 667 (849)
Q Consensus 639 ~l~~~~~~~~~p~~i~~l~~L~~L~~~~~ 667 (849)
++++|.+....+..++.+++|+.|++.++
T Consensus 84 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ECCCCccCEeCHHHhcCCCCCCEEEeCCC
Confidence 77777766333334666666666665444
No 153
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.83 E-value=2.4e-10 Score=112.31 Aligned_cols=126 Identities=19% Similarity=0.104 Sum_probs=93.5
Q ss_pred cceEeccCCC-CCcccCccccCCCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCccccccccccccCcc
Q 003086 587 LSYLCLSNTH-PLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGF 665 (849)
Q Consensus 587 Lr~L~L~~~~-~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~ 665 (849)
|+.+.+.++. .++.+|..++.+++|++|++++|.. ..+| .+.++++|++|++++|.+. .+|..++.+++|+.|++.
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l-~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI-EKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWIS 101 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEE-SCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCC-cccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECc
Confidence 3444444321 2445555899999999999997764 4478 8999999999999999877 677777777888888877
Q ss_pred cccCCCCCCCCCchhhhccccccceeeeeccCcccch-HhhcCCCCCCeEEEEeecC
Q 003086 666 RPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEE-DALVNLRELQFLSISCFDS 721 (849)
Q Consensus 666 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~L~~~~~ 721 (849)
.+... . +..+..+++|+.|++++|.+..... ..+..+++|+.|++++|.+
T Consensus 102 ~N~l~----~--l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 102 YNQIA----S--LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp EEECC----C--HHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCcCC----c--CCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 66321 1 3467888888888888887766544 5678888888888887754
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.82 E-value=9.8e-09 Score=98.14 Aligned_cols=96 Identities=19% Similarity=0.211 Sum_probs=43.8
Q ss_pred eEEecCCccccccccccccccCCCCccceEeccCCCCCccc-CccccCCCCCcEEeeccccCCccCCh-hhhcccCCcEe
Q 003086 561 RVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHL-PPSLKKLKNLQILDVSYCQNLKMLPS-YVQSFIQLRAL 638 (849)
Q Consensus 561 r~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L 638 (849)
+.++++++.+. .+|..+. ++|++|+|++| .+..+ |..+..+++|++|+|++|... .+|. .+.++++|++|
T Consensus 15 ~~l~~~~n~l~----~iP~~~~--~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L 86 (174)
T 2r9u_A 15 TLVNCQNIRLA----SVPAGIP--TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQL 86 (174)
T ss_dssp SEEECCSSCCS----SCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred cEEEeCCCCCC----ccCCCcC--CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEE
Confidence 34555555543 3444332 45555555555 33333 334455555555555544322 2332 23455555555
Q ss_pred eccCCCCccccCccccccccccccCc
Q 003086 639 DVTHCGSLQYLPKGFGKLLNLEVLLG 664 (849)
Q Consensus 639 ~l~~~~~~~~~p~~i~~l~~L~~L~~ 664 (849)
++++|.+....+..++.+++|+.|++
T Consensus 87 ~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 87 DLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred ECCCCccceeCHHHhccccCCCEEEe
Confidence 55555544222222444444444443
No 155
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.81 E-value=3.3e-08 Score=102.72 Aligned_cols=172 Identities=9% Similarity=-0.028 Sum_probs=107.3
Q ss_pred ccccccccHHHHHHHHhcc--CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhc---cc-C-ceEEEEeCCccCHHHHHHH
Q 003086 162 LVVGLEGDTRKIKDWLFEA--EEGILAIGVVGMGGLGKTTIAQKVFNDREIEN---WF-E-RRMWVSVSQTFTEEQIMRS 234 (849)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~f-~-~~~wv~~s~~~~~~~~~~~ 234 (849)
.+.|||+++++|...|... +.....+.|+|++|+|||++|+.+++.-.... .. . .++.|++....+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 3789999999999888763 34567889999999999999999988422111 11 1 3567777777889999999
Q ss_pred HHHHhcCCCC--CCCHHHHHHHHHHH--hcCccEEEEEcCCCccCHHHHHHHHhcC--CCCCCc--eEEEEecchh----
Q 003086 235 MLRNLGDASA--GDDRGELLRKINQY--LLGKRYLIVMDDVWGEDLAWWRRIYEGL--PKGKGS--SIIITTRNGK---- 302 (849)
Q Consensus 235 i~~~l~~~~~--~~~~~~~~~~l~~~--l~~~~~LlVlDdv~~~~~~~~~~l~~~l--~~~~~s--~ilvTtr~~~---- 302 (849)
|++++.+... +.....+...+... -.+++++++||+++... ..+.+...+ +....+ -||.++...+
T Consensus 101 I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~ 178 (318)
T 3te6_A 101 IWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTIRE 178 (318)
T ss_dssp HHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHH
T ss_pred HHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccchh
Confidence 9999976532 22333333333321 24568999999997732 122233222 112233 3344443321
Q ss_pred -hhhhcccc-ccccccCCCCChhhHHHHHHHHhhc
Q 003086 303 -VSQKMGVK-KARMHFPKFLSEDDSWLLFRKIAFA 335 (849)
Q Consensus 303 -v~~~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~ 335 (849)
+....... ....+.+.+++.+|..+++.+++..
T Consensus 179 ~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 179 QINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp HHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred hcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 11111111 1146889999999999999998754
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.79 E-value=4.6e-08 Score=106.79 Aligned_cols=211 Identities=11% Similarity=0.023 Sum_probs=124.8
Q ss_pred hhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccC-ccccCCCCCcEEeeccccCCccCChh
Q 003086 550 LATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLP-PSLKKLKNLQILDVSYCQNLKMLPSY 628 (849)
Q Consensus 550 ~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~ 628 (849)
-...|.++ +|+.+.|..+ +. ..-..+|.+ .+|+.+.|..+ +..++ ..|.++.+|+.+++..|. +..+|..
T Consensus 128 ~~~aF~~~-~L~~i~l~~~-i~---~I~~~aF~~-~~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~ 198 (401)
T 4fdw_A 128 PKDAFRNS-QIAKVVLNEG-LK---SIGDMAFFN-STVQEIVFPST--LEQLKEDIFYYCYNLKKADLSKTK-ITKLPAS 198 (401)
T ss_dssp CTTTTTTC-CCSEEECCTT-CC---EECTTTTTT-CCCCEEECCTT--CCEECSSTTTTCTTCCEEECTTSC-CSEECTT
T ss_pred hHhhcccC-CccEEEeCCC-cc---EECHHhcCC-CCceEEEeCCC--ccEehHHHhhCcccCCeeecCCCc-ceEechh
Confidence 34567665 6888887765 32 122245555 36888888753 45554 457778888888887543 4445544
Q ss_pred hhcccCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccchHhhcCC
Q 003086 629 VQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIEEDALVNL 708 (849)
Q Consensus 629 i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~ 708 (849)
...+.+|+.+.+..+ +.......|..+++|+.+.+..+. .......|.+ .+|+.+.+.. .+..+...+|..+
T Consensus 199 aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l-----~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c 270 (401)
T 4fdw_A 199 TFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENV-----STIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYC 270 (401)
T ss_dssp TTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTC-----CEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTC
T ss_pred hEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCc-----cCcccccccc-CCccEEEeCC-CccEEChhHhhCC
Confidence 334678888888754 443444557777788877654321 1122223444 5777777743 3455666778888
Q ss_pred CCCCeEEEEeecCCCCch-hhhccccCCCCCCCeEEEeccCCCCCCCcCCCCCCCCCceEEEeeCCccccccc
Q 003086 709 RELQFLSISCFDSHGSDL-VAKIDELYPPEQLDELSLNFYPGKTSPVWLNPASLPMLRYLSVCSGNLSKMHDS 780 (849)
Q Consensus 709 ~~L~~L~L~~~~~~~~~~-~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~~~ 780 (849)
++|+.+.+..+....... .-.-..+..|++|+.+.+.+.........| ..|++|+.|.|.. +++.++..
T Consensus 271 ~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF--~~c~~L~~l~lp~-~l~~I~~~ 340 (401)
T 4fdw_A 271 PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLL--GGNRKVTQLTIPA-NVTQINFS 340 (401)
T ss_dssp TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTT--TTCCSCCEEEECT-TCCEECTT
T ss_pred CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhh--cCCCCccEEEECc-cccEEcHH
Confidence 888888887664431100 001234566778888877654333323344 6778888888853 45555443
No 157
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.76 E-value=4.9e-08 Score=106.19 Aligned_cols=194 Identities=14% Similarity=0.083 Sum_probs=115.2
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHh-
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNL- 239 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l- 239 (849)
.+++|++..++.+...+..+. ....+.|+|++|+||||+|+.+.+.......+. ...+... .....+...-
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~---~~~~~~~----~~~~~~~~~~~ 87 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT---ATPCGVC----DNCREIEQGRF 87 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC---SSCCSSS----HHHHHHHTSCC
T ss_pred hhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC---CCCCccc----HHHHHHhccCC
Confidence 359999999999999987653 234678999999999999999976321111000 0000000 0001111000
Q ss_pred ------cCC--CCCCCHHHHHHHHHHH-hcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEecchh-hhhhcc
Q 003086 240 ------GDA--SAGDDRGELLRKINQY-LLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITTRNGK-VSQKMG 308 (849)
Q Consensus 240 ------~~~--~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTtr~~~-v~~~~~ 308 (849)
... ...+...++.+.+... ..+++.++|+||++..+...++.+...+...+ +..+|++|.... +.....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~ 167 (373)
T 1jr3_A 88 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 (373)
T ss_dssp SSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHH
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHH
Confidence 000 0011222222221110 13567899999998766777777877775544 667777775432 222222
Q ss_pred ccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHh
Q 003086 309 VKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVG 368 (849)
Q Consensus 309 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~ 368 (849)
... ..+++.+++.++..+++.+.+..... ....+....|++.++|.|..+..+.
T Consensus 168 sr~-~~i~~~~l~~~~~~~~l~~~~~~~~~-----~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 168 SRC-LQFHLKALDVEQIRHQLEHILNEEHI-----AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp TTS-EEEECCCCCHHHHHHHHHHHHHHHTC-----CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred hhe-eEeeCCCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 222 57899999999999999887633211 1224567789999999999876554
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.74 E-value=9.7e-08 Score=104.21 Aligned_cols=181 Identities=10% Similarity=-0.028 Sum_probs=77.2
Q ss_pred cccCCCCccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCcccccccc
Q 003086 579 SQTGSLQHLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLN 658 (849)
Q Consensus 579 ~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~ 658 (849)
.+|.++.+|+.++|.+| .+..+|...-...+|+.+.+. ++....-...|.++++|+.+.+..+ +.......|.. .+
T Consensus 174 ~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp-~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~ 249 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLP-VTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SG 249 (401)
T ss_dssp STTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECC-TTCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CC
T ss_pred HHhhCcccCCeeecCCC-cceEechhhEeecccCEEEeC-CchheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CC
Confidence 34555555555555555 455555433334555555554 2222222334445555555555443 22122222333 44
Q ss_pred ccccCcccccCCCCCCCCCchhhhccccccceeeeeccCc-----ccchHhhcCCCCCCeEEEEeecCCCCchhhhcccc
Q 003086 659 LEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGD-----EIEEDALVNLRELQFLSISCFDSHGSDLVAKIDEL 733 (849)
Q Consensus 659 L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l 733 (849)
|+.+.+... ........|.+|++|+.+.+..+... .+....|..+++|+.+.|.. .+... .-..+
T Consensus 250 L~~i~lp~~-----i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I----~~~aF 319 (401)
T 4fdw_A 250 ITTVKLPNG-----VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRIL----GQGLL 319 (401)
T ss_dssp CSEEEEETT-----CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEE----CTTTT
T ss_pred ccEEEeCCC-----ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEE----hhhhh
Confidence 444443211 01112223455555555555544322 23334555555555555542 11111 11233
Q ss_pred CCCCCCCeEEEeccCCCCCCCcCCCCCCCCCceEEEeeCCccc
Q 003086 734 YPPEQLDELSLNFYPGKTSPVWLNPASLPMLRYLSVCSGNLSK 776 (849)
Q Consensus 734 ~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~l~~ 776 (849)
..|.+|+.+.+........+..| ..+ +|+.|.+.+|.+..
T Consensus 320 ~~c~~L~~l~lp~~l~~I~~~aF--~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 320 GGNRKVTQLTIPANVTQINFSAF--NNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp TTCCSCCEEEECTTCCEECTTSS--SSS-CCCEEEECCSSCCB
T ss_pred cCCCCccEEEECccccEEcHHhC--CCC-CCCEEEEcCCCCcc
Confidence 44555555555433222222233 344 55555555554443
No 159
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.71 E-value=7e-08 Score=102.41 Aligned_cols=182 Identities=12% Similarity=0.012 Sum_probs=115.9
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccC-ceEEEEeCCccCHHHHHHHHHHHh
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFE-RRMWVSVSQTFTEEQIMRSMLRNL 239 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l 239 (849)
.+++|++..++.+.+++..+. .+.+.|+|++|+|||++|+.+.+.-. ...+. ..+.++.+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~----------- 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGI----------- 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCT-----------
T ss_pred HHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccCh-----------
Confidence 468999999999988887653 33389999999999999999977310 11111 1233444322110
Q ss_pred cCCCCCCCHHHHHHHHHHH--h-cCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEecchh-hhhhcccccccc
Q 003086 240 GDASAGDDRGELLRKINQY--L-LGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITTRNGK-VSQKMGVKKARM 314 (849)
Q Consensus 240 ~~~~~~~~~~~~~~~l~~~--l-~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTtr~~~-v~~~~~~~~~~~ 314 (849)
....+....+... + .+++.++|+|+++.......+.+...+...+ +..+|+||.... +...+.... ..
T Consensus 83 ------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~-~~ 155 (319)
T 2chq_A 83 ------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC-AV 155 (319)
T ss_dssp ------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTC-EE
T ss_pred ------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhC-eE
Confidence 1111111111111 1 2567899999998866677777887776654 777888776533 222222222 47
Q ss_pred ccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHh
Q 003086 315 HFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVG 368 (849)
Q Consensus 315 ~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~ 368 (849)
+++.+++.++..+++.+.+.... ..-.++....|++.++|.+..+....
T Consensus 156 i~~~~~~~~~~~~~l~~~~~~~~-----~~i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 156 FRFKPVPKEAMKKRLLEICEKEG-----VKITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTC-----CCBCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 89999999999999988874321 12235667889999999998655443
No 160
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.67 E-value=4.5e-08 Score=93.13 Aligned_cols=104 Identities=20% Similarity=0.133 Sum_probs=68.8
Q ss_pred ccceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCccccccccccccCcc
Q 003086 586 HLSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGF 665 (849)
Q Consensus 586 ~Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~ 665 (849)
..+.+++++| .+..+|..+. .+|++|+|++|......|..+.++++|++|++++|.+....+..++.+++|+.|++.
T Consensus 10 ~~~~l~~s~n-~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGK-SLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCC-CcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4578999999 8888997663 789999999887666668889999999999999998773333334555555555543
Q ss_pred cccCCCCCCCCCchhhhccccccceeeeecc
Q 003086 666 RPARSSQPEGCRISELKNLTRLRKLGLQLTC 696 (849)
Q Consensus 666 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 696 (849)
.+. ........+..+++|+.|++++|.
T Consensus 87 ~N~----l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 87 DNQ----LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SSC----CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCc----cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 332 122222234444445555554443
No 161
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.67 E-value=6.6e-07 Score=95.67 Aligned_cols=176 Identities=17% Similarity=0.204 Sum_probs=109.6
Q ss_pred CCccccccccHHHHHHHHhcc---CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHH
Q 003086 160 HTLVVGLEGDTRKIKDWLFEA---EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSML 236 (849)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 236 (849)
-.+++|++..++.+..++... ......|.|+|++|+|||+||+.+.+. .... .+.++++....
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~---~~~~~~~~~~~--------- 93 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE--MSAN---IKTTAAPMIEK--------- 93 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCC---EEEEEGGGCCS---------
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEecchhccc---------
Confidence 356999999999999888753 234556899999999999999999762 2222 23333332211
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-------------------CceEEEE
Q 003086 237 RNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-------------------GSSIIIT 297 (849)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-------------------~s~ilvT 297 (849)
.......+.. ..+..+|+||++..........+...+.... +..+|.|
T Consensus 94 -----------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a 160 (338)
T 3pfi_A 94 -----------SGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGA 160 (338)
T ss_dssp -----------HHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEE
T ss_pred -----------hhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEe
Confidence 1111111111 2456799999998866666666665543321 1456666
Q ss_pred ecchhh-hhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHH
Q 003086 298 TRNGKV-SQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAV 367 (849)
Q Consensus 298 tr~~~v-~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 367 (849)
|..... ...........+.+.+++.++..+++.+.+.... .....+..+.|++.+.|.|-.+..+
T Consensus 161 tn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~-----~~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 161 TTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN-----KTCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp ESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-----CEECHHHHHHHHHTTTTCHHHHHHH
T ss_pred CCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHCcCHHHHHHH
Confidence 654221 1111111114789999999999999998874321 1223566788999999999655443
No 162
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.66 E-value=5.6e-08 Score=92.83 Aligned_cols=102 Identities=20% Similarity=0.165 Sum_probs=68.9
Q ss_pred cceEeccCCCCCcccCccccCCCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCc-cccccccccccCcc
Q 003086 587 LSYLCLSNTHPLIHLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPK-GFGKLLNLEVLLGF 665 (849)
Q Consensus 587 Lr~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~~ 665 (849)
-+.++++++ .+..+|..+. .+|++|+|++|......|..+.++++|++|++++|.+.. +|. .++.+++|+.|++.
T Consensus 14 ~~~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEECC
Confidence 378999999 8899998764 889999999887666668889999999999999998873 443 34555666655544
Q ss_pred cccCCCCCCCCCchhhhccccccceeeeecc
Q 003086 666 RPARSSQPEGCRISELKNLTRLRKLGLQLTC 696 (849)
Q Consensus 666 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 696 (849)
.+. ........+..+++|+.|++++|.
T Consensus 90 ~N~----l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 90 DNH----LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SSC----CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CCc----cceeCHHHhccccCCCEEEeCCCC
Confidence 332 122112224445555555555543
No 163
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.62 E-value=3.8e-07 Score=98.27 Aligned_cols=195 Identities=12% Similarity=0.071 Sum_probs=115.9
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccC-ceEEEEeCCccCHHHHHHHHHHHh
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFE-RRMWVSVSQTFTEEQIMRSMLRNL 239 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l 239 (849)
.+++|+++.++.+..++..+. ...+.|+|++|+||||+|+.+.+.......+. .++.+..+.......+ .+.+..+
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 113 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REKVKNF 113 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHHHHHH
Confidence 568999999999999987763 22388999999999999999987421111122 2334444433233222 2222211
Q ss_pred cCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEecch-hhhhhccccccccccC
Q 003086 240 GDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITTRNG-KVSQKMGVKKARMHFP 317 (849)
Q Consensus 240 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTtr~~-~v~~~~~~~~~~~~~l 317 (849)
........... .....-.+++-+|++|++..........+...+.... ..++|++|... .+........ ..+.+
T Consensus 114 ~~~~~~~~~~~---~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~-~~i~~ 189 (353)
T 1sxj_D 114 ARLTVSKPSKH---DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC-SKFRF 189 (353)
T ss_dssp HHSCCCCCCTT---HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS-EEEEC
T ss_pred hhhcccccchh---hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC-ceEEe
Confidence 11100000000 0000112355799999998766666667766665444 56777776543 2222222211 46889
Q ss_pred CCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHH
Q 003086 318 KFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAV 367 (849)
Q Consensus 318 ~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 367 (849)
.+++.++....+.+.+.... ..-.++..+.|++.++|.|-.+..+
T Consensus 190 ~~~~~~~~~~~l~~~~~~~~-----~~i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 190 KALDASNAIDRLRFISEQEN-----VKCDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp CCCCHHHHHHHHHHHHHTTT-----CCCCHHHHHHHHHHTSSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhC-----CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999998764221 1223567889999999999865443
No 164
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.60 E-value=1e-09 Score=118.77 Aligned_cols=44 Identities=14% Similarity=0.193 Sum_probs=26.5
Q ss_pred hhhccccccceeeeeccCcccch----HhhcCCCCCCeEEEEeecCCC
Q 003086 680 ELKNLTRLRKLGLQLTCGDEIEE----DALVNLRELQFLSISCFDSHG 723 (849)
Q Consensus 680 ~l~~l~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~L~~~~~~~ 723 (849)
.+..+++|+.|++++|.++.... ..+...++|++|+|++|.++.
T Consensus 206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 34555667777777776554322 334456677777777776543
No 165
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.58 E-value=6.5e-07 Score=97.03 Aligned_cols=199 Identities=16% Similarity=0.100 Sum_probs=114.0
Q ss_pred CCccccccccHHHH---HHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeC----CccCHHHHH
Q 003086 160 HTLVVGLEGDTRKI---KDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVS----QTFTEEQIM 232 (849)
Q Consensus 160 ~~~~vGr~~~~~~l---~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s----~~~~~~~~~ 232 (849)
-.+++|++..++.+ .+.+..+....+.+.|+|++|+|||++|+.+.+. ..... ..+.+... ......+.+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~--l~~~~-~~~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA--LGPDT-PFTAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH--HCSSC-CEEEEEGGGGSCSSSCHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH--hcccC-CcccccchhhhhcccchhHHH
Confidence 34799999887764 4555554333468899999999999999999873 22111 11222221 123344444
Q ss_pred HHHHHHhcC-------------------------------CCCCCCHHHHHHHHHHHh-----cCc----cEEEEEcCCC
Q 003086 233 RSMLRNLGD-------------------------------ASAGDDRGELLRKINQYL-----LGK----RYLIVMDDVW 272 (849)
Q Consensus 233 ~~i~~~l~~-------------------------------~~~~~~~~~~~~~l~~~l-----~~~----~~LlVlDdv~ 272 (849)
.+....... ...+.....+...+.+.. .++ +.+|+||++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 444333111 000111222333332221 233 3599999999
Q ss_pred ccCHHHHHHHHhcCCCCCCceEEEEecc-------------hhhhhhccccccccccCCCCChhhHHHHHHHHhhccCCC
Q 003086 273 GEDLAWWRRIYEGLPKGKGSSIIITTRN-------------GKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEG 339 (849)
Q Consensus 273 ~~~~~~~~~l~~~l~~~~~s~ilvTtr~-------------~~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~ 339 (849)
..+......+...+.......++++|.. ..+...+.... ..+.+.+++.++..+++.+.+....
T Consensus 200 ~l~~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~~~~~~-- 276 (368)
T 3uk6_A 200 MLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRL-LIVSTTPYSEKDTKQILRIRCEEED-- 276 (368)
T ss_dssp GSBHHHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTE-EEEEECCCCHHHHHHHHHHHHHHTT--
T ss_pred ccChHHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcccCCHHHHhhc-cEEEecCCCHHHHHHHHHHHHHHcC--
Confidence 8777888888888766554445555531 11111111111 3578999999999999998874321
Q ss_pred CCCCCchhHHHHHHHHhcC-CchhHHHHH
Q 003086 340 ECQHPSLEGVGKEIVEKCK-GLPLAIKAV 367 (849)
Q Consensus 340 ~~~~~~~~~~~~~i~~~c~-G~PLai~~~ 367 (849)
..--++..+.|++.+. |.|-.+..+
T Consensus 277 ---~~~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 277 ---VEMSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp ---CCBCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHhcCCCHHHHHHH
Confidence 2233567788888887 777655443
No 166
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.56 E-value=1.2e-07 Score=92.08 Aligned_cols=149 Identities=15% Similarity=0.138 Sum_probs=83.5
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhh---hc--ccCceEEEEeCCccCHHHHHHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREI---EN--WFERRMWVSVSQTFTEEQIMRSM 235 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~--~f~~~~wv~~s~~~~~~~~~~~i 235 (849)
..++||+++++++.+.+.... .+.+.|+|++|+|||+||+.+++...- .. .....+++.++. +.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--- 90 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV--- 90 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------HH---
T ss_pred cccccchHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------Hh---
Confidence 468999999999999987743 456789999999999999999873111 00 112234443321 10
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHH---h--cCccEEEEEcCCCccC--------HHHHHHHHhcCCCCCCceEEEEecchh
Q 003086 236 LRNLGDASAGDDRGELLRKINQY---L--LGKRYLIVMDDVWGED--------LAWWRRIYEGLPKGKGSSIIITTRNGK 302 (849)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~l~~~---l--~~~~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~s~ilvTtr~~~ 302 (849)
... .........+.+. + .+++.+|||||++... ......+...+. ..+..+|+||....
T Consensus 91 ----~~~---~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~ 162 (195)
T 1jbk_A 91 ----AGA---KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-RGELHCVGATTLDE 162 (195)
T ss_dssp ----TTT---CSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH-TTSCCEEEEECHHH
T ss_pred ----ccC---CccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc-cCCeEEEEeCCHHH
Confidence 000 0111111222221 1 3567899999997632 111233333332 23556777776544
Q ss_pred hh------hhccccccccccCCCCChhhHHHHH
Q 003086 303 VS------QKMGVKKARMHFPKFLSEDDSWLLF 329 (849)
Q Consensus 303 v~------~~~~~~~~~~~~l~~L~~~e~~~lf 329 (849)
.. ..+.... ..+.+.+++.++..+++
T Consensus 163 ~~~~~~~~~~l~~r~-~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 163 YRQYIEKDAALERRF-QKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHTTTCHHHHTTE-EEEECCCCCHHHHHTTC
T ss_pred HHHHHhcCHHHHHHh-ceeecCCCCHHHHHHHh
Confidence 22 1111111 35788888888877654
No 167
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.52 E-value=1.3e-07 Score=95.66 Aligned_cols=172 Identities=15% Similarity=0.090 Sum_probs=100.3
Q ss_pred Ccccccc---ccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHH
Q 003086 161 TLVVGLE---GDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLR 237 (849)
Q Consensus 161 ~~~vGr~---~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 237 (849)
.+|+|.+ ..++.+..+...+ ..+.+.|+|++|+||||||+.+++. .......+.|++++..... +.
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~------~~- 96 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI------ST- 96 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS------CG-
T ss_pred hhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH------HH-
Confidence 4577643 3344444444443 3567889999999999999999873 3333345677776542110 00
Q ss_pred HhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHH--HHHHHhcCCC--CCCc-eEEEEecchh---------h
Q 003086 238 NLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAW--WRRIYEGLPK--GKGS-SIIITTRNGK---------V 303 (849)
Q Consensus 238 ~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~--~~~l~~~l~~--~~~s-~ilvTtr~~~---------v 303 (849)
+. + +.+ .++.+||+||++...... .+.+...+.. ..+. ++|+||+... +
T Consensus 97 ------------~~---~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l 159 (242)
T 3bos_A 97 ------------AL---L-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDL 159 (242)
T ss_dssp ------------GG---G-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHH
T ss_pred ------------HH---H-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhh
Confidence 00 0 001 345799999997633222 3334443322 1132 4888876422 1
Q ss_pred hhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHH
Q 003086 304 SQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAV 367 (849)
Q Consensus 304 ~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 367 (849)
...+... ..+++.+++.++..+++...+.... ....++..+.|++.++|.+-.+..+
T Consensus 160 ~~r~~~~--~~i~l~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 160 VSRMHWG--LTYQLQPMMDDEKLAALQRRAAMRG-----LQLPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp HHHHHHS--EEEECCCCCGGGHHHHHHHHHHHTT-----CCCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred hhHhhcC--ceEEeCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHccCCHHHHHHH
Confidence 1111111 4789999999999999998874221 1223567788999999988766544
No 168
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.50 E-value=2.1e-07 Score=99.09 Aligned_cols=103 Identities=14% Similarity=0.006 Sum_probs=77.2
Q ss_pred cccCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhcccccc-ceeeeeccCcccchHhhcCCC
Q 003086 631 SFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLR-KLGLQLTCGDEIEEDALVNLR 709 (849)
Q Consensus 631 ~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~l~~~~ 709 (849)
.+++|+.|++++|.+....+..|..+++|+.+.+..+ ........|.++++|+ .+.+.. .+..+.+.+|..++
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-----i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~ 297 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-----LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCD 297 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-----CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCT
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-----cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCc
Confidence 3789999999998887555556889999999986554 1333344688899999 999987 56777778899999
Q ss_pred CCCeEEEEeecCCCCchhhhccccCCCCCCCeEE
Q 003086 710 ELQFLSISCFDSHGSDLVAKIDELYPPEQLDELS 743 (849)
Q Consensus 710 ~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~ 743 (849)
+|+.|++..|.+... .-..+..+++|+.+.
T Consensus 298 ~L~~l~l~~n~i~~I----~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 298 NLRYVLATGDKITTL----GDELFGNGVPSKLIY 327 (329)
T ss_dssp TEEEEEECSSCCCEE----CTTTTCTTCCCCEEE
T ss_pred cCCEEEeCCCccCcc----chhhhcCCcchhhhc
Confidence 999999977765443 223466788888775
No 169
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.49 E-value=2.3e-07 Score=99.76 Aligned_cols=92 Identities=16% Similarity=0.096 Sum_probs=66.7
Q ss_pred hhhhhhcCCCcceEEecCC-ccccccccccccccCCCCccceEeccCCCCCcccC-ccccCCCCCcEEeeccccCCccCC
Q 003086 549 NLATKFSECRYLRVLDISR-SIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLP-PSLKKLKNLQILDVSYCQNLKMLP 626 (849)
Q Consensus 549 ~~~~~~~~l~~Lr~L~L~~-~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~lp 626 (849)
.+|. |..+++|+.|+|++ |.+.. ..+..|+.|++|++|+|++| .+..+| ..|.+|++|+.|+|++|... .+|
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~---~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~ 96 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQH---LELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNALE-SLS 96 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCE---ECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSCCS-CCC
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCC---cChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCccc-eeC
Confidence 4666 88888888888886 88862 33367888888888888888 565554 46788888888888876544 455
Q ss_pred hhhhcccCCcEeeccCCCCc
Q 003086 627 SYVQSFIQLRALDVTHCGSL 646 (849)
Q Consensus 627 ~~i~~l~~L~~L~l~~~~~~ 646 (849)
..+.....|+.|++.+|.+.
T Consensus 97 ~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 97 WKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp STTTCSCCCCEEECCSSCCC
T ss_pred HHHcccCCceEEEeeCCCcc
Confidence 44433334888888888765
No 170
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.49 E-value=1.1e-06 Score=91.34 Aligned_cols=183 Identities=16% Similarity=0.090 Sum_probs=103.1
Q ss_pred CCCccccccccHHHHHHHHhcc-----------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccC
Q 003086 159 DHTLVVGLEGDTRKIKDWLFEA-----------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFT 227 (849)
Q Consensus 159 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 227 (849)
.-.+++|.++.+++|.+.+... -...+.+.|+|++|+|||+||+.+++. .... .+.+..+.-
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~---~~~v~~~~~-- 87 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNAT---FIRVVGSEL-- 87 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCE---EEEEEGGGG--
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehHHH--
Confidence 3457999999999998877542 123456899999999999999999873 2221 223333211
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCcc-----------CHHHHHHHHh---cC---CCCC
Q 003086 228 EEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGE-----------DLAWWRRIYE---GL---PKGK 290 (849)
Q Consensus 228 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------~~~~~~~l~~---~l---~~~~ 290 (849)
.....+.........+.......+.+|+|||++.. +......+.. .+ ....
T Consensus 88 ------------~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 155 (285)
T 3h4m_A 88 ------------VKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARG 155 (285)
T ss_dssp ------------CCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSS
T ss_pred ------------HHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 11111111222222333333456789999999641 1222222222 22 2223
Q ss_pred CceEEEEecchhhhh-hccc--cccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCC-chhHHHH
Q 003086 291 GSSIIITTRNGKVSQ-KMGV--KKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKG-LPLAIKA 366 (849)
Q Consensus 291 ~s~ilvTtr~~~v~~-~~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-~PLai~~ 366 (849)
+..||.||....... .... .....+.+.+.+.++..+++...+...... . ......+++.+.| .|-.+..
T Consensus 156 ~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~--~----~~~~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 156 DVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA--E----DVNLEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC--T----TCCHHHHHHHCTTCCHHHHHH
T ss_pred CEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC--C----cCCHHHHHHHcCCCCHHHHHH
Confidence 667788887543221 1111 111478899999999999999887432211 1 1124567777777 4434443
No 171
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.49 E-value=8.5e-07 Score=97.84 Aligned_cols=203 Identities=14% Similarity=0.097 Sum_probs=115.7
Q ss_pred ccc-ccccc--HHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccC--ceEEEEeCCccCHHHHHHHHH
Q 003086 162 LVV-GLEGD--TRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFE--RRMWVSVSQTFTEEQIMRSML 236 (849)
Q Consensus 162 ~~v-Gr~~~--~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~--~~~wv~~s~~~~~~~~~~~i~ 236 (849)
.|+ |.... ...+......+.. ...+.|+|++|+||||||+.+++ .....+. .++++++. .+..++.
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~~------~~~~~~~ 176 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSE------KFLNDLV 176 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEHH------HHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHH------HHHHHHH
Confidence 455 64443 2333343433332 56789999999999999999988 3434432 24555443 3344444
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCH--HHHHHHHhcCCC--CCCceEEEEecch---------hh
Q 003086 237 RNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDL--AWWRRIYEGLPK--GKGSSIIITTRNG---------KV 303 (849)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~l~~~l~~--~~~s~ilvTtr~~---------~v 303 (849)
..+... .. ..+...+..+.-+|+|||++.... ...+.+...+.. ..|..||+||... .+
T Consensus 177 ~~~~~~----~~----~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L 248 (440)
T 2z4s_A 177 DSMKEG----KL----NEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRL 248 (440)
T ss_dssp HHHHTT----CH----HHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHH
T ss_pred HHHHcc----cH----HHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHH
Confidence 444321 11 223333443667999999976322 333444444321 3367888888752 12
Q ss_pred hhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHhhhh------hcCCCC
Q 003086 304 SQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVGGMM------LYKPPT 377 (849)
Q Consensus 304 ~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l------~~~~~~ 377 (849)
...+... ..+.+++++.++..+++.+.+..... ...+++...|++.+.|.+-.+.-+...+ .++.-+
T Consensus 249 ~sR~~~g--~~i~l~~p~~e~r~~iL~~~~~~~~~-----~i~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It 321 (440)
T 2z4s_A 249 VSRFQMG--LVAKLEPPDEETRKSIARKMLEIEHG-----ELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVD 321 (440)
T ss_dssp HHHHHSS--BCCBCCCCCHHHHHHHHHHHHHHHTC-----CCCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred HhhccCC--eEEEeCCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 2222211 37889999999999999988743211 1124557788999999886544332211 122234
Q ss_pred hHHHHHHHHhh
Q 003086 378 YNEWRRTADNF 388 (849)
Q Consensus 378 ~~~w~~~~~~~ 388 (849)
.+.+..++...
T Consensus 322 ~~~~~~~l~~~ 332 (440)
T 2z4s_A 322 LKEAILLLKDF 332 (440)
T ss_dssp HHHHHHHTSTT
T ss_pred HHHHHHHHHHH
Confidence 56666665543
No 172
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.47 E-value=3.8e-09 Score=114.23 Aligned_cols=167 Identities=16% Similarity=0.061 Sum_probs=99.0
Q ss_pred CCcceEEecCCccccccc-cccccccC-CCCccceEeccCCCCCcc--cCccccCCCCCcEEeeccccCCccCChhhh--
Q 003086 557 CRYLRVLDISRSIFELPL-KGLLSQTG-SLQHLSYLCLSNTHPLIH--LPPSLKKLKNLQILDVSYCQNLKMLPSYVQ-- 630 (849)
Q Consensus 557 l~~Lr~L~L~~~~~~~~~-~~~p~~~~-~l~~Lr~L~L~~~~~~~~--lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~-- 630 (849)
++.|+.|+|++|.+.... ..+...+. ...+|++|+|++| .+.. +......+.+|+.|+|++|.........+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 467889999999886310 01112222 2368999999988 5532 122223456788888887765433333332
Q ss_pred ---cccCCcEeeccCCCCccccCccccccccccccCcccccCCCCCCCCCchhhhccccccceeeeeccCcccc----hH
Q 003086 631 ---SFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLLGFRPARSSQPEGCRISELKNLTRLRKLGLQLTCGDEIE----ED 703 (849)
Q Consensus 631 ---~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~----~~ 703 (849)
..++|++|++++|.+..... ......+..+++|+.|++++|.+.... ..
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~------------------------~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~ 205 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGV------------------------AVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA 205 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHH------------------------HHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHH------------------------HHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence 35678888888776542110 011224556777888888888765433 25
Q ss_pred hhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccC
Q 003086 704 ALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYP 748 (849)
Q Consensus 704 ~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~ 748 (849)
.+...++|+.|+|++|.++..........+..+++|++|+++++.
T Consensus 206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 567778899999998877653322223334445667777766553
No 173
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.41 E-value=1.2e-06 Score=96.47 Aligned_cols=180 Identities=17% Similarity=0.133 Sum_probs=104.1
Q ss_pred CccccccccH---HHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCc-cCHHHHHHHHH
Q 003086 161 TLVVGLEGDT---RKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQT-FTEEQIMRSML 236 (849)
Q Consensus 161 ~~~vGr~~~~---~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~ 236 (849)
.+++|.+..+ ..+...+..+. ...+.|+|++|+||||||+.+.+. .... ++.++.. .....+ +.++
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~~--~~~~-----f~~l~a~~~~~~~i-r~~~ 95 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARY--ANAD-----VERISAVTSGVKEI-REAI 95 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHHH--TTCE-----EEEEETTTCCHHHH-HHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHHH--hCCC-----eEEEEeccCCHHHH-HHHH
Confidence 4688888777 67777777654 467899999999999999999873 2222 2333221 122211 1111
Q ss_pred HHhcCCCCCCCHHHHHHHHH-HHhcCccEEEEEcCCCccCHHHHHHHHhcCCCCCCceEEEEecchh--hhhhccccccc
Q 003086 237 RNLGDASAGDDRGELLRKIN-QYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGKGSSIIITTRNGK--VSQKMGVKKAR 313 (849)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~s~ilvTtr~~~--v~~~~~~~~~~ 313 (849)
.... ....+++.+|+||+++.......+.+...+..+.-.-|..||.+.. +...+.... .
T Consensus 96 ----------------~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~v~lI~att~n~~~~l~~aL~sR~-~ 158 (447)
T 3pvs_A 96 ----------------ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRA-R 158 (447)
T ss_dssp ----------------HHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTTSCEEEEEESSCGGGSSCHHHHTTE-E
T ss_pred ----------------HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCceEEEecCCCCcccccCHHHhCce-e
Confidence 1111 1124678899999998865555666665554433222333544432 222222222 4
Q ss_pred cccCCCCChhhHHHHHHHHhhccCCCC--CCCCchhHHHHHHHHhcCCchhHHHHH
Q 003086 314 MHFPKFLSEDDSWLLFRKIAFAATEGE--CQHPSLEGVGKEIVEKCKGLPLAIKAV 367 (849)
Q Consensus 314 ~~~l~~L~~~e~~~lf~~~~~~~~~~~--~~~~~~~~~~~~i~~~c~G~PLai~~~ 367 (849)
.+.+.+++.++...++.+.+....... ....-.++..+.|++.++|.+-.+.-+
T Consensus 159 v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 159 VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 788999999999999998875422110 111223566788888999988765444
No 174
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.38 E-value=6.9e-08 Score=103.40 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=21.1
Q ss_pred ccccccceeeeeccCcccchHhh---cCCCCCCeEEEEeecCC
Q 003086 683 NLTRLRKLGLQLTCGDEIEEDAL---VNLRELQFLSISCFDSH 722 (849)
Q Consensus 683 ~l~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~L~~~~~~ 722 (849)
.+++|+.|++.+|.+.......+ ..+++|+.|+|++|.+.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT 292 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence 35667777776665432222112 23566667776665443
No 175
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.38 E-value=1.2e-06 Score=92.22 Aligned_cols=158 Identities=14% Similarity=0.135 Sum_probs=92.8
Q ss_pred ccccccccHHHHHHHHhcc-------------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCH
Q 003086 162 LVVGLEGDTRKIKDWLFEA-------------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTE 228 (849)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 228 (849)
+++|.+..++.|.+++... ......+.|+|++|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 4788888888887665421 223457899999999999999988773211111112223444311
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCcc---------CHHHHHHHHhcCCCCC-CceEEEEe
Q 003086 229 EQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGE---------DLAWWRRIYEGLPKGK-GSSIIITT 298 (849)
Q Consensus 229 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~-~s~ilvTt 298 (849)
.+.....+.........+... +.-+|+||+++.. .......+...+.... +..||+||
T Consensus 109 ---------~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~ 176 (309)
T 3syl_A 109 ---------DLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAG 176 (309)
T ss_dssp ---------GTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEE
T ss_pred ---------HhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 111111122222222223222 3459999999732 4566666766665554 67788888
Q ss_pred cchhhhh------hccccccccccCCCCChhhHHHHHHHHhh
Q 003086 299 RNGKVSQ------KMGVKKARMHFPKFLSEDDSWLLFRKIAF 334 (849)
Q Consensus 299 r~~~v~~------~~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 334 (849)
....... .+.......+.+.+++.++..+++...+.
T Consensus 177 ~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 177 YADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp CHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 6532211 11111115788999999999999988874
No 176
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.38 E-value=8.9e-07 Score=95.37 Aligned_cols=195 Identities=9% Similarity=0.012 Sum_probs=109.1
Q ss_pred CccccccccHHHHHHHH-hccCCCeEEEEEEcCCCCcHHHHHHHHhcC---hhhhc-ccC--------------------
Q 003086 161 TLVVGLEGDTRKIKDWL-FEAEEGILAIGVVGMGGLGKTTIAQKVFND---REIEN-WFE-------------------- 215 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L-~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~---~~~~~-~f~-------------------- 215 (849)
.+++|.+..++.+..++ ..+. ... +.|+|++|+||||+|+.+... +.... .++
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 91 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSP 91 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECS
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeeccc
Confidence 46889999888888887 4432 233 899999999999999988662 10000 000
Q ss_pred ceEEEEeCCcc-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-Cce
Q 003086 216 RRMWVSVSQTF-TEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSS 293 (849)
Q Consensus 216 ~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ 293 (849)
..+.+..+... ......++++..+.....- .... .+.. +.+++-++|||++..-+....+.+...+.... +..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~-~ls~-l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~ 166 (354)
T 1sxj_E 92 YHLEITPSDMGNNDRIVIQELLKEVAQMEQV---DFQD-SKDG-LAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIR 166 (354)
T ss_dssp SEEEECCC----CCHHHHHHHHHHHTTTTC-----------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEE
T ss_pred ceEEecHhhcCCcchHHHHHHHHHHHHhccc---cccc-cccc-cCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCE
Confidence 01111111100 0000122222222211110 0000 0000 23466799999998866777777776664433 677
Q ss_pred EEEEecch-hhhhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCch-hHHHHHHHHhcCCchhHHHHHh
Q 003086 294 IIITTRNG-KVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSL-EGVGKEIVEKCKGLPLAIKAVG 368 (849)
Q Consensus 294 ilvTtr~~-~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~-~~~~~~i~~~c~G~PLai~~~~ 368 (849)
+|++|... .+...+.... ..+++.+++.++..+++.+.+..... .-. ++....|++.++|.+-.+..+.
T Consensus 167 ~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 167 LIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNERI-----QLETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTC-----EECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHcCC-----CCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 77777652 2322222222 57899999999999999988743211 112 3567889999999997665544
No 177
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.37 E-value=6.1e-07 Score=96.33 Aligned_cols=98 Identities=20% Similarity=0.164 Sum_probs=79.9
Q ss_pred EEecCCc-cccccccccccccCCCCccceEeccC-CCCCcccC-ccccCCCCCcEEeeccccCCccCChhhhcccCCcEe
Q 003086 562 VLDISRS-IFELPLKGLLSQTGSLQHLSYLCLSN-THPLIHLP-PSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRAL 638 (849)
Q Consensus 562 ~L~L~~~-~~~~~~~~~p~~~~~l~~Lr~L~L~~-~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 638 (849)
.++++++ .+. .+|. +..+++|++|+|++ | .+..+| ..|+.|.+|++|+|++|.+....|..|.+|++|++|
T Consensus 12 ~v~~~~~n~l~----~ip~-l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 85 (347)
T 2ifg_A 12 GLRCTRDGALD----SLHH-LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85 (347)
T ss_dssp CEECCSSCCCT----TTTT-SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred EEEcCCCCCCC----ccCC-CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEE
Confidence 4577887 776 6888 99999999999996 7 778777 568999999999999887767677788999999999
Q ss_pred eccCCCCccccCcc-ccccccccccCcccc
Q 003086 639 DVTHCGSLQYLPKG-FGKLLNLEVLLGFRP 667 (849)
Q Consensus 639 ~l~~~~~~~~~p~~-i~~l~~L~~L~~~~~ 667 (849)
+|++|.+. .+|.. +..+. |+.|++..+
T Consensus 86 ~l~~N~l~-~~~~~~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 86 NLSFNALE-SLSWKTVQGLS-LQELVLSGN 113 (347)
T ss_dssp ECCSSCCS-CCCSTTTCSCC-CCEEECCSS
T ss_pred eCCCCccc-eeCHHHcccCC-ceEEEeeCC
Confidence 99999988 45544 44444 888887665
No 178
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.36 E-value=8.1e-06 Score=84.09 Aligned_cols=200 Identities=13% Similarity=0.046 Sum_probs=106.5
Q ss_pred CccccccccHHHHHHH-------Hhcc-CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHH
Q 003086 161 TLVVGLEGDTRKIKDW-------LFEA-EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIM 232 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~-------L~~~-~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 232 (849)
..++|.+..++++++. +... ....+.+.|+|++|+|||+||+.+++. .... .+.+..+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~---~~~i~~~~~------- 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE--SNFP---FIKICSPDK------- 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH--HTCS---EEEEECGGG-------
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEeCHHH-------
Confidence 3577888777777662 3221 335678999999999999999999873 2211 223333221
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCcc----------CHHHHHHHHhcCCC---CC-CceEEEEe
Q 003086 233 RSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGE----------DLAWWRRIYEGLPK---GK-GSSIIITT 298 (849)
Q Consensus 233 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------~~~~~~~l~~~l~~---~~-~s~ilvTt 298 (849)
+.+.........+...+......+..+|+|||++.. .....+.+...+.. .. ...||.||
T Consensus 101 ------~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~tt 174 (272)
T 1d2n_A 101 ------MIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTT 174 (272)
T ss_dssp ------CTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEE
T ss_pred ------hcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEec
Confidence 100000000112222333333467889999998541 23334445444432 12 44567777
Q ss_pred cchhhhhh--ccccccccccCCCCCh-hhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCC------chhHHHHHhh
Q 003086 299 RNGKVSQK--MGVKKARMHFPKFLSE-DDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKG------LPLAIKAVGG 369 (849)
Q Consensus 299 r~~~v~~~--~~~~~~~~~~l~~L~~-~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G------~PLai~~~~~ 369 (849)
........ ........+++++++. ++...++.+.. . -..+....|++.+.| .+-++..+-.
T Consensus 175 n~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~--------~--~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~ 244 (272)
T 1d2n_A 175 SRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG--------N--FKDKERTTIAQQVKGKKVWIGIKKLLMLIEM 244 (272)
T ss_dssp SCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT--------C--SCHHHHHHHHHHHTTSEEEECHHHHHHHHHH
T ss_pred CChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC--------C--CCHHHHHHHHHHhcCCCccccHHHHHHHHHH
Confidence 76543332 1111124678899988 67676666532 0 114556788888887 3344433332
Q ss_pred hhhcCCCChHHHHHHHHhhhh
Q 003086 370 MMLYKPPTYNEWRRTADNFRD 390 (849)
Q Consensus 370 ~l~~~~~~~~~w~~~~~~~~~ 390 (849)
... .. ....+..+++.+..
T Consensus 245 a~~-~~-~~~~~~~~~~~l~~ 263 (272)
T 1d2n_A 245 SLQ-MD-PEYRVRKFLALLRE 263 (272)
T ss_dssp HTT-SC-GGGHHHHHHHHHHH
T ss_pred Hhh-hc-hHHHHHHHHHHHHH
Confidence 222 11 14456666555433
No 179
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.35 E-value=1.6e-06 Score=92.04 Aligned_cols=172 Identities=17% Similarity=0.100 Sum_probs=105.9
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhc
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLG 240 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 240 (849)
.+++|.+..++.+.+++..+. ...++.+.|++|+|||++|+.+.+. ... .++.++.+.. ...
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~--l~~---~~~~i~~~~~-~~~----------- 87 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHD--VNA---DMMFVNGSDC-KID----------- 87 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHH--TTE---EEEEEETTTC-CHH-----------
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHH--hCC---CEEEEccccc-CHH-----------
Confidence 568999999999999998653 2356778888999999999999873 221 2344554332 121
Q ss_pred CCCCCCCHHHHHHHHHHHh-----cCccEEEEEcCCCccC-HHHHHHHHhcCCCCC-CceEEEEecchh-hhhhcccccc
Q 003086 241 DASAGDDRGELLRKINQYL-----LGKRYLIVMDDVWGED-LAWWRRIYEGLPKGK-GSSIIITTRNGK-VSQKMGVKKA 312 (849)
Q Consensus 241 ~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~-~~~~~~l~~~l~~~~-~s~ilvTtr~~~-v~~~~~~~~~ 312 (849)
.+...+.+.. .+++.+||+||++... ....+.+...+.... +..+|+||.... +........
T Consensus 88 ---------~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~- 157 (324)
T 3u61_B 88 ---------FVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC- 157 (324)
T ss_dssp ---------HHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS-
T ss_pred ---------HHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC-
Confidence 1222222221 2367899999999865 666666766665433 677888876533 211111111
Q ss_pred ccccCCCCChhhHHHHHHHH-------hhccCCCCCCCCchh-HHHHHHHHhcCCchhHHH
Q 003086 313 RMHFPKFLSEDDSWLLFRKI-------AFAATEGECQHPSLE-GVGKEIVEKCKGLPLAIK 365 (849)
Q Consensus 313 ~~~~l~~L~~~e~~~lf~~~-------~~~~~~~~~~~~~~~-~~~~~i~~~c~G~PLai~ 365 (849)
..+++++++.++..+++... +.... ..-.+ +....|++.++|.+-.+.
T Consensus 158 ~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 158 RVITFGQPTDEDKIEMMKQMIRRLTEICKHEG-----IAIADMKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHT-----CCBSCHHHHHHHHHHTCSCTTHHH
T ss_pred cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcC-----CCCCcHHHHHHHHHhCCCCHHHHH
Confidence 47889999988854433222 21111 11113 677889999988876543
No 180
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.34 E-value=5.9e-06 Score=87.38 Aligned_cols=185 Identities=15% Similarity=0.080 Sum_probs=103.5
Q ss_pred CCccccccccHHHHHHHHhc----------cCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHH
Q 003086 160 HTLVVGLEGDTRKIKDWLFE----------AEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEE 229 (849)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 229 (849)
-.+++|.+..++.|.+.+.. .....+.|.|+|++|+|||+||+.+++. .... .+.++++
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~v~~~------ 85 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANST---FFSVSSS------ 85 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCE---EEEEEHH------
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCC---EEEEchH------
Confidence 45789999999999887731 1123457899999999999999999873 2222 2233322
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCH-----------HHHHHHHhcCC---C-CCCceE
Q 003086 230 QIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDL-----------AWWRRIYEGLP---K-GKGSSI 294 (849)
Q Consensus 230 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-----------~~~~~l~~~l~---~-~~~s~i 294 (849)
++ . ....+.....+...+...-..++.+|+||+++.... .....+...+. . ..+..|
T Consensus 86 ~l----~----~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 157 (322)
T 3eie_A 86 DL----V----SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 157 (322)
T ss_dssp HH----H----TTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEE
T ss_pred HH----h----hcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEE
Confidence 11 1 111111122222222233345678999999975211 11233333222 2 225566
Q ss_pred EEEecchhh-hhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCc-hhHHHHHh
Q 003086 295 IITTRNGKV-SQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGL-PLAIKAVG 368 (849)
Q Consensus 295 lvTtr~~~v-~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~-PLai~~~~ 368 (849)
|.||..... ...+.......+.+...+.++..+++..++.... ..........|++.+.|. +-.|..+.
T Consensus 158 i~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~-----~~~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 158 LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTP-----CVLTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCC-----CCCCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred EEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCC-----CCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 667765322 1111111114677888999999999998874221 111244567888998874 43444443
No 181
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.34 E-value=1.6e-05 Score=83.78 Aligned_cols=186 Identities=15% Similarity=0.111 Sum_probs=103.6
Q ss_pred CCccccccccHHHHHHHHhcc----------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHH
Q 003086 160 HTLVVGLEGDTRKIKDWLFEA----------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEE 229 (849)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 229 (849)
-.+++|.++.++.|.+.+..+ ....+.|.|+|++|+|||+||+.+++... .. ..+.++.+.-.
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~---~~~~i~~~~l~--- 83 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NS---TFFSISSSDLV--- 83 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SC---EEEEEECCSSC---
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CC---cEEEEEhHHHH---
Confidence 357899999888888776421 11346789999999999999999987310 11 12233333211
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCcc-------CH----HHHHHHHhcC---CC-CCCceE
Q 003086 230 QIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGE-------DL----AWWRRIYEGL---PK-GKGSSI 294 (849)
Q Consensus 230 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------~~----~~~~~l~~~l---~~-~~~s~i 294 (849)
....+.....+...+...-..++.+|+||+++.. .. .....+...+ .. ..+..|
T Consensus 84 -----------~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~v 152 (322)
T 1xwi_A 84 -----------SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 152 (322)
T ss_dssp -----------CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEE
T ss_pred -----------hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEE
Confidence 1111223333333333333567889999999752 00 1112222222 11 225556
Q ss_pred EEEecchh-hhhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchh-HHHHHh
Q 003086 295 IITTRNGK-VSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPL-AIKAVG 368 (849)
Q Consensus 295 lvTtr~~~-v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PL-ai~~~~ 368 (849)
|.||.... +...+.......+.+...+.++..+++..+...... .........|++.+.|..- .|..+.
T Consensus 153 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-----~l~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 153 LGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN-----SLTEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCB-----CCCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCC-----CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 66665432 111111111146778888999999999887632211 1124556789999988743 355444
No 182
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.33 E-value=1.3e-06 Score=98.77 Aligned_cols=192 Identities=18% Similarity=0.176 Sum_probs=109.6
Q ss_pred CCccccccccHHHHHHHHhccC---------------CCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCC
Q 003086 160 HTLVVGLEGDTRKIKDWLFEAE---------------EGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQ 224 (849)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~~---------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 224 (849)
-.+++|++..++++.+++.... ...+.+.|+|++|+||||+|+.+++. .. + .++.++++.
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~--l~--~-~~i~in~s~ 112 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--LG--Y-DILEQNASD 112 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--TT--C-EEEEECTTS
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH--cC--C-CEEEEeCCC
Confidence 3579999999999999987510 13468999999999999999999873 21 1 234455554
Q ss_pred ccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH--hcCccEEEEEcCCCccC---HHHHHHHHhcCCCCCCceEEEEec
Q 003086 225 TFTEEQIMRSMLRNLGDASAGDDRGELLRKINQY--LLGKRYLIVMDDVWGED---LAWWRRIYEGLPKGKGSSIIITTR 299 (849)
Q Consensus 225 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~--l~~~~~LlVlDdv~~~~---~~~~~~l~~~l~~~~~s~ilvTtr 299 (849)
..... +....+........ .........+. ..+++.+||+|+++... ...+..+...+... +..||+++.
T Consensus 113 ~~~~~-~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~-~~~iIli~~ 187 (516)
T 1sxj_A 113 VRSKT-LLNAGVKNALDNMS---VVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT-STPLILICN 187 (516)
T ss_dssp CCCHH-HHHHTGGGGTTBCC---STTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC-SSCEEEEES
T ss_pred cchHH-HHHHHHHHHhcccc---HHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc-CCCEEEEEc
Confidence 44433 22222222211110 00000000001 13567899999997622 22234444443322 344655554
Q ss_pred chh---hhhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCch-hHHHHHh
Q 003086 300 NGK---VSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLP-LAIKAVG 368 (849)
Q Consensus 300 ~~~---v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P-Lai~~~~ 368 (849)
... +.. ..... ..+.+.+++.++..+++.+.+...... -.++....|++.++|.+ -++..+.
T Consensus 188 ~~~~~~l~~-l~~r~-~~i~f~~~~~~~~~~~L~~i~~~~~~~-----i~~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 188 ERNLPKMRP-FDRVC-LDIQFRRPDANSIKSRLMTIAIREKFK-----LDPNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp CTTSSTTGG-GTTTS-EEEECCCCCHHHHHHHHHHHHHHHTCC-----CCTTHHHHHHHHTTTCHHHHHHHHT
T ss_pred CCCCccchh-hHhce-EEEEeCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 322 211 21111 468899999999999998877543211 12345778999999954 4555543
No 183
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.33 E-value=5.2e-06 Score=89.06 Aligned_cols=184 Identities=11% Similarity=0.035 Sum_probs=103.1
Q ss_pred CccccccccHHHHHHHHhcc----------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEA----------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQ 230 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 230 (849)
.+++|.+..++.|.+.+..+ ....+.|.|+|++|+|||+||+.+++. .... .+.++++.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~i~~~~l~~--- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGAT---FFSISASSLTS--- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTCE---EEEEEGGGGCC---
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCCe---EEEEehHHhhc---
Confidence 46899999999998877531 123567899999999999999999873 2211 34444442211
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCcc-----------CHHHHHHHHhcCCC---C-C-CceE
Q 003086 231 IMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGE-----------DLAWWRRIYEGLPK---G-K-GSSI 294 (849)
Q Consensus 231 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------~~~~~~~l~~~l~~---~-~-~s~i 294 (849)
...+.........+...-..++.+|+||+++.. .......+...+.. . . +..|
T Consensus 156 -----------~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~v 224 (357)
T 3d8b_A 156 -----------KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILV 224 (357)
T ss_dssp -----------SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEE
T ss_pred -----------cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEE
Confidence 111111111112222222456789999999531 01222333333221 1 2 4455
Q ss_pred EEEecch-hhhhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCC-chhHHHHHh
Q 003086 295 IITTRNG-KVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKG-LPLAIKAVG 368 (849)
Q Consensus 295 lvTtr~~-~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-~PLai~~~~ 368 (849)
|.||... .+...........+.+...+.++..+++...+..... .-..+....|++.+.| .+-.+..+.
T Consensus 225 I~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~-----~l~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 225 VGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC-----CLSEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp EEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB-----CCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC-----CccHHHHHHHHHHcCCCCHHHHHHHH
Confidence 6566543 2222111111136778889999999999887632211 1124567789999988 455555544
No 184
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.32 E-value=1.9e-05 Score=80.76 Aligned_cols=184 Identities=11% Similarity=0.110 Sum_probs=100.0
Q ss_pred CccccccccHHHHHHHHh---ccC-------CCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHH
Q 003086 161 TLVVGLEGDTRKIKDWLF---EAE-------EGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQ 230 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~---~~~-------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 230 (849)
.+++|.+..++.+.+++. .+. ...+.|.|+|++|+|||++|+.+++. ... ..+.+.++.-.+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~---~~~~~~~~~~~~--- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQV---PFLAMAGAEFVE--- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTC---CEEEEETTTTSS---
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCC---CEEEechHHHHh---
Confidence 468999988877766543 221 23456889999999999999999873 222 234444443211
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCcc------------CH---HHHHHHHhcCCC---CCCc
Q 003086 231 IMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGE------------DL---AWWRRIYEGLPK---GKGS 292 (849)
Q Consensus 231 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~------------~~---~~~~~l~~~l~~---~~~s 292 (849)
...+.....+...+.......+.+|+|||++.. .. .....+...+.. ..+.
T Consensus 78 -----------~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~ 146 (262)
T 2qz4_A 78 -----------VIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHV 146 (262)
T ss_dssp -----------SSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCE
T ss_pred -----------hccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCE
Confidence 001111222223333333456789999999752 01 112223222221 2255
Q ss_pred eEEEEecchhhh-hhccc--cccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchh-HHHHH
Q 003086 293 SIIITTRNGKVS-QKMGV--KKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPL-AIKAV 367 (849)
Q Consensus 293 ~ilvTtr~~~v~-~~~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PL-ai~~~ 367 (849)
.||.||...... ..... .....+.+...+.++..+++...+..... ..........+++.+.|.+- .+..+
T Consensus 147 ~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~----~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 147 IVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL----TQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp EEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC----CBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred EEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC----CcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 667777553321 11111 11146778999999999999888743221 11122234778888888764 34333
No 185
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.28 E-value=1.3e-05 Score=85.71 Aligned_cols=185 Identities=15% Similarity=0.088 Sum_probs=102.1
Q ss_pred CCccccccccHHHHHHHHhcc----------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHH
Q 003086 160 HTLVVGLEGDTRKIKDWLFEA----------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEE 229 (849)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 229 (849)
-.+++|.+..++.|.+.+..+ ....+.|.|+|++|+|||+||+.+++. .... .+.++++
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~---~~~v~~~------ 118 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANST---FFSVSSS------ 118 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCE---EEEEEHH------
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCC---EEEeeHH------
Confidence 346899999999998876421 112346889999999999999999883 2222 2223222
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCH-----------HHHHHHHhcC---CC-CCCceE
Q 003086 230 QIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDL-----------AWWRRIYEGL---PK-GKGSSI 294 (849)
Q Consensus 230 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-----------~~~~~l~~~l---~~-~~~s~i 294 (849)
++. ....+.....+...+...-..++.+|+||+++.... .....+...+ .. ..+..|
T Consensus 119 ~l~--------~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 190 (355)
T 2qp9_X 119 DLV--------SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 190 (355)
T ss_dssp HHH--------SCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEE
T ss_pred HHh--------hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEE
Confidence 111 111122222233333333346789999999976221 1122232222 22 225556
Q ss_pred EEEecchh-hhhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCc-hhHHHHHh
Q 003086 295 IITTRNGK-VSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGL-PLAIKAVG 368 (849)
Q Consensus 295 lvTtr~~~-v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~-PLai~~~~ 368 (849)
|.||.... +...+.......+.+...+.++..+++..+...... ..-......|++.+.|. +-.|..+.
T Consensus 191 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-----~~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 191 LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPS-----VLTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCB-----CCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCC-----CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 66665432 111111111146778889999999999888732211 11234567888999884 43454443
No 186
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.27 E-value=5e-06 Score=88.74 Aligned_cols=178 Identities=11% Similarity=0.055 Sum_probs=107.2
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccC-ceEEEEeCCccCHHHHHHHHHHHh
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFE-RRMWVSVSQTFTEEQIMRSMLRNL 239 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l 239 (849)
.+++|.+..++.+...+..+. ...+.++|++|+||||+|+.+.+.-. ...+. .+.-++.+.....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~----------- 90 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGI----------- 90 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSH-----------
T ss_pred HHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccH-----------
Confidence 357888888888888777653 33388999999999999999977311 11111 1222222221122
Q ss_pred cCCCCCCCHHHHHHHHHHHh------cCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEecch-hhhhhccccc
Q 003086 240 GDASAGDDRGELLRKINQYL------LGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITTRNG-KVSQKMGVKK 311 (849)
Q Consensus 240 ~~~~~~~~~~~~~~~l~~~l------~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTtr~~-~v~~~~~~~~ 311 (849)
+.+.+.+.... .+.+-++|+|+++.......+.+...+...+ ...+|++|... .+........
T Consensus 91 ---------~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~ 161 (340)
T 1sxj_C 91 ---------DVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQC 161 (340)
T ss_dssp ---------HHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred ---------HHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhc
Confidence 22222222211 2346799999998765666777766665434 56677766542 2222222222
Q ss_pred cccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHH
Q 003086 312 ARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAV 367 (849)
Q Consensus 312 ~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 367 (849)
..+.+.+++.++..+.+.+.+.... ..-.++..+.|++.++|.+-.+..+
T Consensus 162 -~~~~~~~l~~~~~~~~l~~~~~~~~-----~~i~~~~~~~i~~~s~G~~r~~~~~ 211 (340)
T 1sxj_C 162 -TRFRFQPLPQEAIERRIANVLVHEK-----LKLSPNAEKALIELSNGDMRRVLNV 211 (340)
T ss_dssp -EEEECCCCCHHHHHHHHHHHHHTTT-----CCBCHHHHHHHHHHHTTCHHHHHHH
T ss_pred -eeEeccCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 4678899999999998887763211 1122456788999999988754433
No 187
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.26 E-value=1.7e-05 Score=84.18 Aligned_cols=171 Identities=12% Similarity=0.069 Sum_probs=105.9
Q ss_pred cccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhh--------------------cccCceEEEEeCCcc
Q 003086 167 EGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIE--------------------NWFERRMWVSVSQTF 226 (849)
Q Consensus 167 ~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--------------------~~f~~~~wv~~s~~~ 226 (849)
++..+.+...+..+. -...+.++|++|+|||++|+.+.+.-.-. .|++ ..++....
T Consensus 8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~-- 83 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEK-- 83 (334)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCT--
T ss_pred HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccc--
Confidence 344556666665542 34568899999999999999986631100 0122 22332210
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHh-----cCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEecc
Q 003086 227 TEEQIMRSMLRNLGDASAGDDRGELLRKINQYL-----LGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITTRN 300 (849)
Q Consensus 227 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTtr~ 300 (849)
.......+++.+ +.+.+ .+++-++|+|+++..+....+.+...+...+ ++.+|++|.+
T Consensus 84 ---------------~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~ 147 (334)
T 1a5t_A 84 ---------------GKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATRE 147 (334)
T ss_dssp ---------------TCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESC
T ss_pred ---------------cCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCC
Confidence 000112222222 22222 2567899999999877777888888887655 6676666655
Q ss_pred h-hhhhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHHh
Q 003086 301 G-KVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVG 368 (849)
Q Consensus 301 ~-~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~ 368 (849)
. .+...+.... ..+++.+++.++..+++.+.. . ..++.+..+++.++|.|..+..+.
T Consensus 148 ~~~l~~ti~SRc-~~~~~~~~~~~~~~~~L~~~~--~--------~~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 148 PERLLATLRSRC-RLHYLAPPPEQYAVTWLSREV--T--------MSQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp GGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHC--C--------CCHHHHHHHHHHTTTCHHHHHHTT
T ss_pred hHhCcHHHhhcc-eeeeCCCCCHHHHHHHHHHhc--C--------CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 3 3433333333 578999999999999998775 0 114556789999999998776554
No 188
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.25 E-value=7e-06 Score=87.00 Aligned_cols=168 Identities=14% Similarity=0.062 Sum_probs=94.8
Q ss_pred HHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHH
Q 003086 170 TRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRG 249 (849)
Q Consensus 170 ~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~ 249 (849)
...+..++..+......+.|+|++|+||||||+.+++. ....-..++++++. .+...+...+... ...
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~~------~~~~~~~~~~~~~----~~~ 90 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSAD------DFAQAMVEHLKKG----TIN 90 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEHH------HHHHHHHHHHHHT----CHH
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEHH------HHHHHHHHHHHcC----cHH
Confidence 33444545444323567899999999999999999873 22211234555543 3333333333211 111
Q ss_pred HHHHHHHHHhcCccEEEEEcCCCccCH--HHHHHHHhcCCC--CCCceEEEEecchh---------hhhhcccccccccc
Q 003086 250 ELLRKINQYLLGKRYLIVMDDVWGEDL--AWWRRIYEGLPK--GKGSSIIITTRNGK---------VSQKMGVKKARMHF 316 (849)
Q Consensus 250 ~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~l~~~l~~--~~~s~ilvTtr~~~---------v~~~~~~~~~~~~~ 316 (849)
. +...+. +..+|+|||+..... ...+.+...+.. ..+..||+||.... +...+... ..++
T Consensus 91 ~----~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~--~~i~ 163 (324)
T 1l8q_A 91 E----FRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGG--ILVE 163 (324)
T ss_dssp H----HHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTS--EEEE
T ss_pred H----HHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCc--eEEE
Confidence 2 222222 357999999976332 333444444321 23667888886421 11111111 3688
Q ss_pred CCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhH
Q 003086 317 PKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLA 363 (849)
Q Consensus 317 l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLa 363 (849)
+++ +.++..+++.+.+.... ..-.++....|++.+ |..-.
T Consensus 164 l~~-~~~e~~~il~~~~~~~~-----~~l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 164 IEL-DNKTRFKIIKEKLKEFN-----LELRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp CCC-CHHHHHHHHHHHHHHTT-----CCCCHHHHHHHHHHC-SSHHH
T ss_pred eCC-CHHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHhC-CCHHH
Confidence 999 99999999998874322 122256677888888 77654
No 189
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.25 E-value=1.4e-05 Score=87.05 Aligned_cols=185 Identities=11% Similarity=0.103 Sum_probs=101.4
Q ss_pred CCCccccccccHHHHHHHHhcc----------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCH
Q 003086 159 DHTLVVGLEGDTRKIKDWLFEA----------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTE 228 (849)
Q Consensus 159 ~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 228 (849)
.-.+++|.+..++.|.+++... ....+.|.|+|++|+|||+||+.+++. .... .+.++++.-..
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~~---~~~v~~~~l~~- 186 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNAT---FFNISAASLTS- 186 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTCE---EEEECSCCC---
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcCc---EEEeeHHHhhc-
Confidence 3457999999999998887321 112467899999999999999999763 2211 23333332111
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCcc-----------CHHHHHHHHhcC---CC-CC-Cc
Q 003086 229 EQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGE-----------DLAWWRRIYEGL---PK-GK-GS 292 (849)
Q Consensus 229 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------~~~~~~~l~~~l---~~-~~-~s 292 (849)
...+.....+...+...-...+.+|+||+++.. .......+...+ .. .. ..
T Consensus 187 -------------~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 253 (389)
T 3vfd_A 187 -------------KYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRV 253 (389)
T ss_dssp ------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CE
T ss_pred -------------cccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCE
Confidence 001112222222222233455689999999642 111122222222 11 12 44
Q ss_pred eEEEEecchh-hhhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchh-HHHHH
Q 003086 293 SIIITTRNGK-VSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPL-AIKAV 367 (849)
Q Consensus 293 ~ilvTtr~~~-v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PL-ai~~~ 367 (849)
.||.||.... +...........+.+...+.++..+++...+.... .....+....|++.+.|..- ++..+
T Consensus 254 ~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~-----~~l~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 254 LVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQG-----SPLTQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp EEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC-----CCSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 5566665422 21111111113577888999999999988873321 12234566789999988654 44443
No 190
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.21 E-value=2.1e-05 Score=82.18 Aligned_cols=183 Identities=15% Similarity=0.169 Sum_probs=100.7
Q ss_pred CCccccccccHHHHHHHHhcc----------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHH
Q 003086 160 HTLVVGLEGDTRKIKDWLFEA----------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEE 229 (849)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 229 (849)
-.+++|.+..++.+.+.+..+ ....+.+.|+|++|+||||+|+.+++. .... .+.++++.-.
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~---~~~i~~~~l~--- 91 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSAT---FLNISAASLT--- 91 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCE---EEEEESTTTS---
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEeeHHHHh---
Confidence 346899999999998877431 112457899999999999999999873 2211 2334443211
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHH-HHHHhcCccEEEEEcCCCcc-----------CHHHHHHHH---hcCCCC---CC
Q 003086 230 QIMRSMLRNLGDASAGDDRGELLRK-INQYLLGKRYLIVMDDVWGE-----------DLAWWRRIY---EGLPKG---KG 291 (849)
Q Consensus 230 ~~~~~i~~~l~~~~~~~~~~~~~~~-l~~~l~~~~~LlVlDdv~~~-----------~~~~~~~l~---~~l~~~---~~ 291 (849)
....+ ........ +......++.+|+||++... .......+. ..++.. .+
T Consensus 92 -----------~~~~~-~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 159 (297)
T 3b9p_A 92 -----------SKYVG-DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDR 159 (297)
T ss_dssp -----------SSSCS-CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------C
T ss_pred -----------hcccc-hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCc
Confidence 11111 12222222 22233456789999999541 011111222 223322 24
Q ss_pred ceEEEEecchh-hhhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchh-HHHHH
Q 003086 292 SSIIITTRNGK-VSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPL-AIKAV 367 (849)
Q Consensus 292 s~ilvTtr~~~-v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PL-ai~~~ 367 (849)
..||.||.... +...........+.+...+.++..+++...+.... ..-.......|++.+.|.+- ++..+
T Consensus 160 v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~-----~~~~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 160 IVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQG-----SPLDTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp EEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGS-----CCSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 45666776532 11111111113566777888888888887763221 11124556788999999876 44443
No 191
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.21 E-value=2e-06 Score=79.08 Aligned_cols=113 Identities=11% Similarity=-0.063 Sum_probs=71.4
Q ss_pred ccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcC
Q 003086 162 LVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGD 241 (849)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 241 (849)
+++|++..++++.+.+..-......|.|+|.+|+|||++|+.+++.... ... ..+ +.++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~-~~~-~~v-~~~~~~~~~------------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRN-AQG-EFV-YRELTPDNA------------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTT-TTS-CCE-EEECCTTTS-------------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCc-cCC-CEE-EECCCCCcc-------------
Confidence 5789999999999888653222345789999999999999999874211 111 223 666543221
Q ss_pred CCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEecc
Q 003086 242 ASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITTRN 300 (849)
Q Consensus 242 ~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTtr~ 300 (849)
.... ..+... ..-.|+||+++.........+...+.... ..+||.||..
T Consensus 66 ----~~~~---~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ----PQLN---DFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ----SCHH---HHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ----hhhh---cHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 0111 111111 23478999998877777777777764444 6788888864
No 192
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.20 E-value=2.8e-07 Score=98.62 Aligned_cols=61 Identities=18% Similarity=0.123 Sum_probs=31.0
Q ss_pred hhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcc-cCcccc--CCCCCcEEeec
Q 003086 550 LATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIH-LPPSLK--KLKNLQILDVS 617 (849)
Q Consensus 550 ~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~-lp~~i~--~L~~L~~L~L~ 617 (849)
+...+..+++|+.|+|++|.-. .++. + .+++|++|+|..| .+.. -...+. .+++|+.|+|+
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l----~l~~-~-~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL----SIGK-K-PRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC----BCCS-C-BCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHHHHhcCCCCcEEEEeCCCCc----eecc-c-cCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEe
Confidence 3445556667777777665211 2222 3 2566777777655 2221 111122 56667777664
No 193
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.14 E-value=3.6e-05 Score=84.98 Aligned_cols=187 Identities=16% Similarity=0.129 Sum_probs=103.0
Q ss_pred CCCccccccccHHHHHHHHhcc----------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCH
Q 003086 159 DHTLVVGLEGDTRKIKDWLFEA----------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTE 228 (849)
Q Consensus 159 ~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 228 (849)
.-.+++|.+..++.|.+.+..+ ....+.|.|+|++|+|||+||+.+++. . ....++.++...
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~----~~~~~~~v~~~~-- 203 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--A----NNSTFFSISSSD-- 203 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH--C----CSSEEEEECCC---
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--c----CCCCEEEEeHHH--
Confidence 3457899999999998876321 123467899999999999999999873 2 122344444321
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCcc-----------CHHHHHHHHhcCCC---CC-Cce
Q 003086 229 EQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGE-----------DLAWWRRIYEGLPK---GK-GSS 293 (849)
Q Consensus 229 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------~~~~~~~l~~~l~~---~~-~s~ 293 (849)
+.. ...+. .......+. ...-...+.+|+||+++.. .......+...+.. .. +..
T Consensus 204 --l~~----~~~g~-~~~~~~~~f---~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~ 273 (444)
T 2zan_A 204 --LVS----KWLGE-SEKLVKNLF---QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 273 (444)
T ss_dssp ---------------CCCTHHHHH---HHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCE
T ss_pred --HHh----hhcch-HHHHHHHHH---HHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEE
Confidence 111 11011 111222222 2222457789999999752 01223344444432 12 566
Q ss_pred EEEEecchhh-hhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCch-hHHHHHh
Q 003086 294 IIITTRNGKV-SQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLP-LAIKAVG 368 (849)
Q Consensus 294 ilvTtr~~~v-~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P-Lai~~~~ 368 (849)
||.||..... ...+.......+.+...+.++..++|..++..... .........|++.+.|.. -.|..+.
T Consensus 274 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-----~l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 274 VLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN-----SLTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE-----ECCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC-----CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 6767754321 11111111136778888889999999887632111 112345678888998854 3444443
No 194
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.12 E-value=4.3e-05 Score=79.81 Aligned_cols=179 Identities=12% Similarity=0.116 Sum_probs=101.1
Q ss_pred CCccccccccHHHHHHHHhcc-----------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCH
Q 003086 160 HTLVVGLEGDTRKIKDWLFEA-----------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTE 228 (849)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 228 (849)
-.+++|.+..++++.+++..+ -...+.|.|+|++|+|||+||+.+++. ... -++.++ .
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~-----~~i~v~----~ 82 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQA-----NFISIK----G 82 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTC-----EEEEEC----H
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCC-----CEEEEE----h
Confidence 346899999988888876532 123457899999999999999999873 222 223333 2
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccC--------------HHHHHHHHhcC---CCCCC
Q 003086 229 EQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGED--------------LAWWRRIYEGL---PKGKG 291 (849)
Q Consensus 229 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--------------~~~~~~l~~~l---~~~~~ 291 (849)
.++... ..+. ....+...+.......+.+|+||++.... ......+...+ ....+
T Consensus 83 ~~l~~~----~~g~----~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 154 (301)
T 3cf0_A 83 PELLTM----WFGE----SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 154 (301)
T ss_dssp HHHHHH----HHTT----CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSS
T ss_pred HHHHhh----hcCc----hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 223222 2111 11223333333344677999999997411 01123333322 22235
Q ss_pred ceEEEEecchhhh-hhccc--cccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhH
Q 003086 292 SSIIITTRNGKVS-QKMGV--KKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLA 363 (849)
Q Consensus 292 s~ilvTtr~~~v~-~~~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLa 363 (849)
..||.||...... ...-. .....+.+...+.++..+++......... ..... ...+++.+.|.|-+
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~--~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV--AKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB--CSSCC----HHHHHHTCSSCCHH
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC--Cccch----HHHHHHHcCCCCHH
Confidence 6777777654322 21111 11146788999999999999887633211 11112 23566677777644
No 195
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.03 E-value=3.5e-05 Score=85.62 Aligned_cols=182 Identities=12% Similarity=0.103 Sum_probs=103.5
Q ss_pred CccccccccHHHHHHHHhcc-----------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEA-----------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEE 229 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 229 (849)
.+++|.+..+++|.+++... ....+-|.|+|++|+|||++|+.+.+. .... .+.++++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~---fv~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSE---EEEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCC---EEEEEch------
Confidence 46899999999998877542 223456899999999999999999773 2222 2334332
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCcc-----------CHHHHHHHHhcC---CCCCCceEE
Q 003086 230 QIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGE-----------DLAWWRRIYEGL---PKGKGSSII 295 (849)
Q Consensus 230 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------~~~~~~~l~~~l---~~~~~s~il 295 (849)
.+. ....+.........+.....+++.+|+||+++.. .......+...+ ....+..||
T Consensus 273 ----~l~----~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vI 344 (489)
T 3hu3_A 273 ----EIM----SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM 344 (489)
T ss_dssp ----HHH----TSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEE
T ss_pred ----Hhh----hhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEE
Confidence 111 1111222233344444455677889999999421 012223333333 222355666
Q ss_pred EEecchh-hhhhccc--cccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCc-hhHHHHH
Q 003086 296 ITTRNGK-VSQKMGV--KKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGL-PLAIKAV 367 (849)
Q Consensus 296 vTtr~~~-v~~~~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~-PLai~~~ 367 (849)
.||.... +...+.. .....+.+...+.++..+++..++..... .... ...++++.+.|. +-.+..+
T Consensus 345 aaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l--~~~~----~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 345 AATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL--ADDV----DLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB--CTTC----CHHHHHHTCTTCCHHHHHHH
T ss_pred EecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC--cchh----hHHHHHHHccCCcHHHHHHH
Confidence 6776542 2222211 11146888999999999999988632211 0111 235677777775 4334433
No 196
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.03 E-value=3.1e-06 Score=81.55 Aligned_cols=45 Identities=22% Similarity=0.247 Sum_probs=38.4
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcC
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
..++||+.+++.+.+.+.... .+.+.|+|++|+|||+||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~--~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRT--KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999987643 456789999999999999999773
No 197
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.02 E-value=2.8e-05 Score=84.89 Aligned_cols=123 Identities=11% Similarity=0.099 Sum_probs=57.4
Q ss_pred hccCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCccc-----
Q 003086 527 SNLKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHL----- 601 (849)
Q Consensus 527 ~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~l----- 601 (849)
.|.+|+++.+... +...-..+|.+|.+|+.++|..+ +. ..-...|.++..|+.+.+..+ +..+
T Consensus 69 ~c~~L~~i~lp~~------i~~I~~~aF~~c~~L~~i~lp~~-l~---~I~~~aF~~c~~L~~i~~p~~--l~~i~~~aF 136 (394)
T 4fs7_A 69 GCRKVTEIKIPST------VREIGEFAFENCSKLEIINIPDS-VK---MIGRCTFSGCYALKSILLPLM--LKSIGVEAF 136 (394)
T ss_dssp TCTTEEEEECCTT------CCEECTTTTTTCTTCCEECCCTT-CC---EECTTTTTTCTTCCCCCCCTT--CCEECTTTT
T ss_pred CCCCceEEEeCCC------ccCcchhHhhCCCCCcEEEeCCC-ce---EccchhhcccccchhhcccCc--eeeecceee
Confidence 4566666655321 12233456777777777777654 21 011234555555555554432 1111
Q ss_pred ------------------CccccCCCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCccccCccccccccccccC
Q 003086 602 ------------------PPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSLQYLPKGFGKLLNLEVLL 663 (849)
Q Consensus 602 ------------------p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 663 (849)
...+.++.+|+.+.+.. .....-...+.++.+|+.+.+..+ +.......+..+..|+.+.
T Consensus 137 ~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~-~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~ 214 (394)
T 4fs7_A 137 KGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPD-SMETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENME 214 (394)
T ss_dssp TTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCC
T ss_pred ecccccccccCccccccchhhhcccCCCcEEecCC-ccceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceee
Confidence 12344555666666642 222222334555666666665544 2212233345555555544
No 198
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.02 E-value=3.2e-06 Score=77.54 Aligned_cols=110 Identities=10% Similarity=-0.022 Sum_probs=65.5
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhc
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLG 240 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 240 (849)
.+++|++..++++.+.+..-......|.|+|.+|+|||++|+.+.+... ..+.++++.. ....
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~~--~~~~--------- 66 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVEY--LIDM--------- 66 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTTH--HHHC---------
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhhC--ChHh---------
Confidence 3578999999999888765212233578999999999999999987422 2222322211 0111
Q ss_pred CCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCC--CCceEEEEecc
Q 003086 241 DASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKG--KGSSIIITTRN 300 (849)
Q Consensus 241 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~--~~s~ilvTtr~ 300 (849)
...+.+. .+.-.|+||++..........+...+... .+.+||.||..
T Consensus 67 -----------~~~~~~~--a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 67 -----------PMELLQK--AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp -----------HHHHHHH--TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred -----------hhhHHHh--CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 1111111 12347899999886666666666655433 26778888763
No 199
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.00 E-value=0.00011 Score=78.06 Aligned_cols=181 Identities=17% Similarity=0.080 Sum_probs=102.8
Q ss_pred CCCCccccccccHHHHHHHHhcc-----------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCcc
Q 003086 158 YDHTLVVGLEGDTRKIKDWLFEA-----------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTF 226 (849)
Q Consensus 158 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 226 (849)
+.=.++.|.++.+++|.+.+.-+ -...+-|.++|++|.|||.||+.+++. ....| +.|+.+.-
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l- 218 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCKF---IRVSGAEL- 218 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCEE---EEEEGGGG-
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCCc---eEEEhHHh-
Confidence 33457889999988887765421 123567889999999999999999883 33332 33443321
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCcc-----------CHH---HHHHHHhc---CCCC
Q 003086 227 TEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGE-----------DLA---WWRRIYEG---LPKG 289 (849)
Q Consensus 227 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------~~~---~~~~l~~~---l~~~ 289 (849)
.....+.+...+.+.+...-...+++|++|+++.. +.. ....+... +...
T Consensus 219 -------------~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 285 (405)
T 4b4t_J 219 -------------VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS 285 (405)
T ss_dssp -------------SCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC
T ss_pred -------------hccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC
Confidence 11122223333333333333567899999998641 011 12223222 2223
Q ss_pred CCceEEEEecchhhh-hhcc--ccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhH
Q 003086 290 KGSSIIITTRNGKVS-QKMG--VKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLA 363 (849)
Q Consensus 290 ~~s~ilvTtr~~~v~-~~~~--~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLa 363 (849)
.+..||.||...+.. ..+- ..-...+++..-+.++..++|+.+.-.... ....+ ...|++.+.|.-=|
T Consensus 286 ~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l--~~dvd----l~~lA~~t~G~SGA 356 (405)
T 4b4t_J 286 KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL--TRGIN----LRKVAEKMNGCSGA 356 (405)
T ss_dssp CCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC--CSSCC----HHHHHHHCCSCCHH
T ss_pred CCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC--CccCC----HHHHHHHCCCCCHH
Confidence 355677777653322 1111 111257888888999999999877632211 11112 35678888876643
No 200
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.97 E-value=3.6e-05 Score=85.48 Aligned_cols=99 Identities=9% Similarity=-0.005 Sum_probs=64.6
Q ss_pred EEEEEcCCCccCHHHHHHHHhcCCCCCCceEEEEe----------c----chhhhhhccccccccccCCCCChhhHHHHH
Q 003086 264 YLIVMDDVWGEDLAWWRRIYEGLPKGKGSSIIITT----------R----NGKVSQKMGVKKARMHFPKFLSEDDSWLLF 329 (849)
Q Consensus 264 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~s~ilvTt----------r----~~~v~~~~~~~~~~~~~l~~L~~~e~~~lf 329 (849)
-++++|+++..+.+.++.+...+...+..-+|+.| . ...+........ ..+.+.+++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~-~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRV-MIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTE-EEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCCEEEEecCCccccccccccccccccCChhHHhhc-ceeeCCCCCHHHHHHHH
Confidence 39999999988888899999888766533444344 2 111111111111 45789999999999999
Q ss_pred HHHhhccCCCCCCCCchhHHHHHHHHhc-CCchhHHHHHh
Q 003086 330 RKIAFAATEGECQHPSLEGVGKEIVEKC-KGLPLAIKAVG 368 (849)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~i~~~c-~G~PLai~~~~ 368 (849)
.+.+.... ..-.++....|++.+ +|.|..+..+.
T Consensus 376 ~~~~~~~~-----~~~~~~~~~~i~~~a~~g~~r~a~~ll 410 (456)
T 2c9o_A 376 KIRAQTEG-----INISEEALNHLGEIGTKTTLRYSVQLL 410 (456)
T ss_dssp HHHHHHHT-----CCBCHHHHHHHHHHHHHSCHHHHHHTH
T ss_pred HHHHHHhC-----CCCCHHHHHHHHHHccCCCHHHHHHHH
Confidence 98863221 112355667888888 88887655543
No 201
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.96 E-value=1.3e-05 Score=89.14 Aligned_cols=147 Identities=15% Similarity=0.132 Sum_probs=81.0
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhccc------Cc-eEEEEeCCccCHHHHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWF------ER-RMWVSVSQTFTEEQIMR 233 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f------~~-~~wv~~s~~~~~~~~~~ 233 (849)
.+++||+.+++++++.|.... ..-+.|+|++|+|||++|+.++.. +...+ +. ++.++++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~---------- 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMG---------- 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC-------------
T ss_pred CCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEEeeCC----------
Confidence 469999999999999997643 335679999999999999999873 21111 11 2222222
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCCCCceEEEEecchhhh------hhc
Q 003086 234 SMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGKGSSIIITTRNGKVS------QKM 307 (849)
Q Consensus 234 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~s~ilvTtr~~~v~------~~~ 307 (849)
....+.....+...+...-...+.+|++| .. .+....+...+.. ...++|.||...... ...
T Consensus 246 -------~~~~g~~e~~~~~~~~~~~~~~~~iLfiD--~~--~~a~~~L~~~L~~-g~v~vI~at~~~e~~~~~~~~~al 313 (468)
T 3pxg_A 246 -------TKYRGEFEDRLKKVMDEIRQAGNIILFID--AA--IDASNILKPSLAR-GELQCIGATTLDEYRKYIEKDAAL 313 (468)
T ss_dssp --------------CTTHHHHHHHHHTCCCCEEEEC--C----------CCCTTS-SSCEEEEECCTTTTHHHHTTCSHH
T ss_pred -------ccccchHHHHHHHHHHHHHhcCCeEEEEe--Cc--hhHHHHHHHhhcC-CCEEEEecCCHHHHHHHhhcCHHH
Confidence 00001111112222222233567899999 22 3333344444432 245666666554311 111
Q ss_pred cccccccccCCCCChhhHHHHHHHHhh
Q 003086 308 GVKKARMHFPKFLSEDDSWLLFRKIAF 334 (849)
Q Consensus 308 ~~~~~~~~~l~~L~~~e~~~lf~~~~~ 334 (849)
.. ....+.+.+.+.++..+++.....
T Consensus 314 ~~-Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 314 ER-RFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp HH-SEEEEECCCCCHHHHHHHHHHTTT
T ss_pred HH-hCccceeCCCCHHHHHHHHHHHHH
Confidence 11 124688999999999999997753
No 202
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.96 E-value=0.0002 Score=77.55 Aligned_cols=180 Identities=15% Similarity=0.086 Sum_probs=102.7
Q ss_pred CCCCccccccccHHHHHHHHhcc-----------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCcc
Q 003086 158 YDHTLVVGLEGDTRKIKDWLFEA-----------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTF 226 (849)
Q Consensus 158 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 226 (849)
+.-.++.|.++.+++|.+.+.-+ -...+-|.++|++|+|||+||+.+++. .... .+.|+.+.-
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~---~~~v~~s~l- 251 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGAN---FIFSPASGI- 251 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCE---EEEEEGGGT-
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehhhh-
Confidence 34457889999888887765431 124577899999999999999999883 3322 233443321
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCcc-----------CH---HHHHHHHhcC---CCC
Q 003086 227 TEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGE-----------DL---AWWRRIYEGL---PKG 289 (849)
Q Consensus 227 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------~~---~~~~~l~~~l---~~~ 289 (849)
.....+.+...+...+...-...+++|++|+++.. +. .....+...+ ...
T Consensus 252 -------------~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 318 (437)
T 4b4t_L 252 -------------VDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL 318 (437)
T ss_dssp -------------CCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT
T ss_pred -------------ccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC
Confidence 11111222222333333333567899999999631 11 1122333322 222
Q ss_pred CCceEEEEecchhhhh-hccc--cccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchh
Q 003086 290 KGSSIIITTRNGKVSQ-KMGV--KKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPL 362 (849)
Q Consensus 290 ~~s~ilvTtr~~~v~~-~~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PL 362 (849)
.+..||.||...+... .+-. .-...+++..-+.++..++|+.+...... ....+ ...|++.+.|.-=
T Consensus 319 ~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~--~~d~d----l~~lA~~t~G~sG 388 (437)
T 4b4t_L 319 GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK--TGEFD----FEAAVKMSDGFNG 388 (437)
T ss_dssp TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB--CSCCC----HHHHHHTCCSCCH
T ss_pred CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC--CcccC----HHHHHHhCCCCCH
Confidence 3567788886543322 1111 11257888888888889999877643221 11122 3567788887653
No 203
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.95 E-value=1.8e-05 Score=81.08 Aligned_cols=130 Identities=11% Similarity=0.175 Sum_probs=69.7
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhc
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLG 240 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 240 (849)
..++|.+..++++.+.+.........|.|+|.+|+|||++|+.+++... ..-...+.++++.. ....+...+ ++
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~--~~~~~~~~v~~~~~-~~~~~~~~l---~g 79 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS--RWQGPFISLNCAAL-NENLLDSEL---FG 79 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST--TTTSCEEEEEGGGS-CHHHHHHHH---HC
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC--ccCCCeEEEecCCC-ChhHHHHHh---cC
Confidence 3588999999998887765322235678999999999999999987421 11112345555543 222121111 12
Q ss_pred CCCC---CCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCC------------CCceEEEEecc
Q 003086 241 DASA---GDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKG------------KGSSIIITTRN 300 (849)
Q Consensus 241 ~~~~---~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~------------~~s~ilvTtr~ 300 (849)
.... +... .....+. ....-+|+||++..........+...+..+ ...+||.||..
T Consensus 80 ~~~~~~~g~~~-~~~~~l~---~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 80 HEAGAFTGAQK-RHPGRFE---RADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp CC----------CCCCHHH---HTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred Ccccccccccc-cccchhh---hcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 1110 0000 0000111 123458999999886666666666554321 14678888865
No 204
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.93 E-value=8.3e-05 Score=78.85 Aligned_cols=175 Identities=18% Similarity=0.224 Sum_probs=97.2
Q ss_pred CccccccccHHHHHHHHhcc---CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEA---EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLR 237 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 237 (849)
..++|.+..++.+...+... +.....+.|+|++|+||||||+.+++. ....| .. .+....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~----~~-~sg~~~---------- 87 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNI----HV-TSGPVL---------- 87 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCE----EE-EETTTC----------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE----EE-EechHh----------
Confidence 35788877777766665442 223467899999999999999999873 22111 11 111100
Q ss_pred HhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCC---------CC----------CceE-EEE
Q 003086 238 NLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPK---------GK----------GSSI-IIT 297 (849)
Q Consensus 238 ~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~---------~~----------~s~i-lvT 297 (849)
....++...+ ..+ .++-++++|++........+.+...+.. +. ...+ -.|
T Consensus 88 --------~~~~~l~~~~-~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at 157 (334)
T 1in4_A 88 --------VKQGDMAAIL-TSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGAT 157 (334)
T ss_dssp --------CSHHHHHHHH-HHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEE
T ss_pred --------cCHHHHHHHH-HHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEec
Confidence 0111111111 112 2345788898876444444444332211 00 1122 234
Q ss_pred ecchhhhhhccccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHH
Q 003086 298 TRNGKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAV 367 (849)
Q Consensus 298 tr~~~v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 367 (849)
++...+.............+.+.+.++..+++.+.+.... .....+.+..|++.++|.|-.+..+
T Consensus 158 ~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 158 TRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD-----VEIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp SCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred CCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHhcCCChHHHHHH
Confidence 4443333222221113578999999999999998874221 2233567889999999999765443
No 205
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.92 E-value=0.00019 Score=73.05 Aligned_cols=181 Identities=13% Similarity=0.076 Sum_probs=95.5
Q ss_pred CCccccccccHHHHHHHHh---ccC-------CCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHH
Q 003086 160 HTLVVGLEGDTRKIKDWLF---EAE-------EGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEE 229 (849)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~---~~~-------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 229 (849)
-.+++|.+..++++.+.+. .+. ...+-+.|+|++|+||||||+.+.+. .... .+.++.+.-.
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~i~~~~~~--- 82 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVP---FFTISGSDFV--- 82 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCC---EEEECSCSST---
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCC---EEEEeHHHHH---
Confidence 3468999888777765432 211 12345889999999999999999873 2212 2333322111
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccC--------------HHHHHHHHhcC---CCCCCc
Q 003086 230 QIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGED--------------LAWWRRIYEGL---PKGKGS 292 (849)
Q Consensus 230 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--------------~~~~~~l~~~l---~~~~~s 292 (849)
....+.....+...+.......+.++++|+++... ......+...+ ....+.
T Consensus 83 -----------~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 151 (257)
T 1lv7_A 83 -----------EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 151 (257)
T ss_dssp -----------TSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCE
T ss_pred -----------HHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCE
Confidence 01112233333444444445567899999984310 01222332222 222255
Q ss_pred eEEEEecchh-hhhhccc--cccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCC-chhHHH
Q 003086 293 SIIITTRNGK-VSQKMGV--KKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKG-LPLAIK 365 (849)
Q Consensus 293 ~ilvTtr~~~-v~~~~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-~PLai~ 365 (849)
.||.||...+ +...... .....+.+...+.++-.+++..+.....- .++ .....+++.+.| .+--+.
T Consensus 152 ~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l----~~~--~~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 152 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPL----APD--IDAAIIARGTPGFSGADLA 222 (257)
T ss_dssp EEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB----CTT--CCHHHHHHTCTTCCHHHHH
T ss_pred EEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCC----Ccc--ccHHHHHHHcCCCCHHHHH
Confidence 6777776543 2121111 11146677788888888888777532111 111 113456777777 554443
No 206
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.92 E-value=3.5e-05 Score=81.08 Aligned_cols=117 Identities=18% Similarity=0.268 Sum_probs=69.1
Q ss_pred ccccccccHHHHHHHHhcc-------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHH
Q 003086 162 LVVGLEGDTRKIKDWLFEA-------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRS 234 (849)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 234 (849)
.++|.+..++.+...+... ......+.|+|++|+|||++|+.+.+. ....-...+.+.++...... ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeecccccccc-cHHH
Confidence 4778888888888777653 112468999999999999999999873 22212234566665433211 1111
Q ss_pred HHHHhcCCCC--CCC-HHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCC
Q 003086 235 MLRNLGDASA--GDD-RGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLP 287 (849)
Q Consensus 235 i~~~l~~~~~--~~~-~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~ 287 (849)
+ ++.... +.. ...+...+. ....-+|+||++.......+..+...+.
T Consensus 95 l---~g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~le 144 (311)
T 4fcw_A 95 L---IGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQMLD 144 (311)
T ss_dssp H---HCCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHH
T ss_pred h---cCCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHHh
Confidence 1 222111 111 122222222 2345799999998877777777776654
No 207
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.90 E-value=2.3e-05 Score=94.25 Aligned_cols=154 Identities=14% Similarity=0.188 Sum_probs=82.8
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhc-----cc-C-ceEEEEeCCccCHHHHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIEN-----WF-E-RRMWVSVSQTFTEEQIMR 233 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-----~f-~-~~~wv~~s~~~~~~~~~~ 233 (849)
.+++||+++++++++.|.... ...+.|+|++|+||||+|+.+++. ... .. . .+++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~~l~~------ 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQR--IVKGDVPEGLKGKRIVSLQMGSLLA------ 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHH--HHHTCSCTTSTTCEEEEECC-----------
T ss_pred cccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHH--HhcCCCchhhcCCeEEEeehHHhhc------
Confidence 468999999999999997753 345789999999999999999873 211 01 1 233443321100
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHh-c-CccEEEEEcCCCccC--------HHHHHHHHhcCCCCCCceEEEEecchhh
Q 003086 234 SMLRNLGDASAGDDRGELLRKINQYL-L-GKRYLIVMDDVWGED--------LAWWRRIYEGLPKGKGSSIIITTRNGKV 303 (849)
Q Consensus 234 ~i~~~l~~~~~~~~~~~~~~~l~~~l-~-~~~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~s~ilvTtr~~~v 303 (849)
+....+ +.......+.+.+ . +++.+|++|++.... ......+...+.. .+..+|.||.....
T Consensus 240 ------g~~~~g-~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~-~~i~~I~at~~~~~ 311 (854)
T 1qvr_A 240 ------GAKYRG-EFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR-GELRLIGATTLDEY 311 (854)
T ss_dssp -------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT-TCCCEEEEECHHHH
T ss_pred ------cCccch-HHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC-CCeEEEEecCchHH
Confidence 000111 2222222232223 2 367999999997621 1112233333322 24456655554332
Q ss_pred -----hhhccccccccccCCCCChhhHHHHHHHHh
Q 003086 304 -----SQKMGVKKARMHFPKFLSEDDSWLLFRKIA 333 (849)
Q Consensus 304 -----~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 333 (849)
...+.. ....+.+.+++.++..+++....
T Consensus 312 ~~~~~d~aL~r-Rf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 312 REIEKDPALER-RFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHTTCTTTCS-CCCCEEECCCCHHHHHHHHHHHH
T ss_pred hhhccCHHHHh-CCceEEeCCCCHHHHHHHHHhhh
Confidence 111212 12458899999999999997654
No 208
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.90 E-value=0.0001 Score=79.55 Aligned_cols=176 Identities=16% Similarity=0.081 Sum_probs=99.7
Q ss_pred CccccccccHHHHHHHHhc----c-------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHH
Q 003086 161 TLVVGLEGDTRKIKDWLFE----A-------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEE 229 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 229 (849)
.++.|.++.+++|.+.+.- + -...+-|.++|++|+|||+||+.+++. ....| +.|+.+.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~f---i~vs~s~----- 278 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDATF---IRVIGSE----- 278 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCEE---EEEEGGG-----
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCCe---EEEEhHH-----
Confidence 4688999988888776432 1 124567889999999999999999883 33222 3344332
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCcc-----------CHH---HHHHHHhcC---CCCCCc
Q 003086 230 QIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGE-----------DLA---WWRRIYEGL---PKGKGS 292 (849)
Q Consensus 230 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------~~~---~~~~l~~~l---~~~~~s 292 (849)
+.....+.+...+...+...-...+++|++|+++.. ... ....+...+ ....+.
T Consensus 279 ---------L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V 349 (467)
T 4b4t_H 279 ---------LVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNI 349 (467)
T ss_dssp ---------GCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTE
T ss_pred ---------hhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcE
Confidence 111222223333333333344567899999998641 001 112222222 222255
Q ss_pred eEEEEecchhhh-hhcc--ccccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCch
Q 003086 293 SIIITTRNGKVS-QKMG--VKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLP 361 (849)
Q Consensus 293 ~ilvTtr~~~v~-~~~~--~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 361 (849)
.||.||...+.. ..+- ..-...+++..-+.++..++|+.+...... ....+ ...|++.|.|.-
T Consensus 350 iVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l--~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 350 KVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV--ERGIR----WELISRLCPNST 415 (467)
T ss_dssp EEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB--CSSCC----HHHHHHHCCSCC
T ss_pred EEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC--CCCCC----HHHHHHHCCCCC
Confidence 567777543321 1111 111257888888999999999877632211 11112 356778888865
No 209
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.88 E-value=2.8e-05 Score=81.70 Aligned_cols=46 Identities=26% Similarity=0.323 Sum_probs=36.7
Q ss_pred CccccccccHHHHHHHHhcc------------CCCeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 161 TLVVGLEGDTRKIKDWLFEA------------EEGILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..++|.+..++.+...+... ......+.|+|++|+|||++|+.+.+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 35889999999998877641 12245688999999999999999987
No 210
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.87 E-value=2e-05 Score=82.27 Aligned_cols=159 Identities=12% Similarity=0.092 Sum_probs=86.7
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhc
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLG 240 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 240 (849)
..++|++..++++.+.+..-......|.|+|.+|+|||++|+.+.+... +.. ...+.++++... ..++.. .+.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~-~~~-~~~v~v~~~~~~--~~l~~~---~lf 74 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA-RSD-RPLVTLNCAALN--ESLLES---ELF 74 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS-CSS-SCCCEEECSSCC--HHHHHH---HHT
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc-ccC-CCeEEEeCCCCC--hHHHHH---Hhc
Confidence 3588999999999888876422334678999999999999999977311 111 123445555332 222222 222
Q ss_pred CCCCCC-C--HHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCC------------CCceEEEEecch---h
Q 003086 241 DASAGD-D--RGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKG------------KGSSIIITTRNG---K 302 (849)
Q Consensus 241 ~~~~~~-~--~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~------------~~s~ilvTtr~~---~ 302 (849)
+...+. + .......+... ..-+|+||++..........+...+... ...+||.||... .
T Consensus 75 g~~~g~~tg~~~~~~g~~~~a---~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~ 151 (304)
T 1ojl_A 75 GHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEE 151 (304)
T ss_dssp CCCSSCCC---CCCCCHHHHH---TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHH
T ss_pred CccccccCchhhhhcCHHHhc---CCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHH
Confidence 211100 0 00000111111 1247999999886666666666555432 146788887653 1
Q ss_pred h---------hhhccccccccccCCCCC--hhhHHHHHHHH
Q 003086 303 V---------SQKMGVKKARMHFPKFLS--EDDSWLLFRKI 332 (849)
Q Consensus 303 v---------~~~~~~~~~~~~~l~~L~--~~e~~~lf~~~ 332 (849)
+ ...+. ...+.+++|. .+|...++.+.
T Consensus 152 v~~g~fr~~L~~Rl~---~~~i~lPpL~eR~edi~~l~~~~ 189 (304)
T 1ojl_A 152 VSAGRFRQDLYYRLN---VVAIEMPSLRQRREDIPLLADHF 189 (304)
T ss_dssp HHHTSSCHHHHHHHS---SEEEECCCSGGGGGGHHHHHHHH
T ss_pred HHhCCcHHHHHhhcC---eeEEeccCHHHhHhhHHHHHHHH
Confidence 1 11111 1356788887 56666555544
No 211
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.85 E-value=0.00013 Score=78.79 Aligned_cols=178 Identities=15% Similarity=0.076 Sum_probs=98.8
Q ss_pred CCCccccccccHHHHHHHHhc----c-------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccC
Q 003086 159 DHTLVVGLEGDTRKIKDWLFE----A-------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFT 227 (849)
Q Consensus 159 ~~~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 227 (849)
.-.++.|.++.+++|.+.+.. + -...+-|.++|++|.|||+||+.+++. .... .+.++.+.
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~---f~~v~~s~--- 250 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNAT---FLKLAAPQ--- 250 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCE---EEEEEGGG---
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCC---EEEEehhh---
Confidence 345789999999988776432 1 124567899999999999999999883 3322 23344332
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCc--------c---CHH---HHHHHHhcCC---CCC
Q 003086 228 EEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWG--------E---DLA---WWRRIYEGLP---KGK 290 (849)
Q Consensus 228 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--------~---~~~---~~~~l~~~l~---~~~ 290 (849)
+.....+.+...+...+...-...+++|++|+++. . +.. ....+...+. ...
T Consensus 251 -----------l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~ 319 (434)
T 4b4t_M 251 -----------LVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD 319 (434)
T ss_dssp -----------GCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC
T ss_pred -----------hhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC
Confidence 11111222222222222223345689999999843 0 001 1222333332 222
Q ss_pred CceEEEEecchhhh-hhccc--cccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCch
Q 003086 291 GSSIIITTRNGKVS-QKMGV--KKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLP 361 (849)
Q Consensus 291 ~s~ilvTtr~~~v~-~~~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 361 (849)
+..||.||...+.. ..+-. .-...+++..-+.++..++|+.+.-..... ...+ ...|++.+.|.-
T Consensus 320 ~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~--~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 320 RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD--DDIN----WQELARSTDEFN 387 (434)
T ss_dssp SSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC--SCCC----HHHHHHHCSSCC
T ss_pred CEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCC--CcCC----HHHHHHhCCCCC
Confidence 45566677654332 22211 122577888889998899998776332211 1112 356777887754
No 212
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.83 E-value=1.5e-05 Score=80.60 Aligned_cols=82 Identities=23% Similarity=0.182 Sum_probs=42.4
Q ss_pred cCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccCccccCCC--CCcEEeeccccCCccCC------
Q 003086 555 SECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLPPSLKKLK--NLQILDVSYCQNLKMLP------ 626 (849)
Q Consensus 555 ~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp~~i~~L~--~L~~L~L~~~~~~~~lp------ 626 (849)
.+++.|+.|+|++|.+.+ +..+|..++.+++|++|+|++| .+..+. .+..+. +|++|+|++|+....+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~-l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYR-LDDMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSCCCC-CGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCCCCC-CccchhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 456666666666666652 1123344456666666666666 454442 233333 56666666555444333
Q ss_pred -hhhhcccCCcEee
Q 003086 627 -SYVQSFIQLRALD 639 (849)
Q Consensus 627 -~~i~~l~~L~~L~ 639 (849)
..+..+++|+.|+
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 1234455555553
No 213
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.83 E-value=2.1e-05 Score=75.26 Aligned_cols=119 Identities=18% Similarity=0.177 Sum_probs=63.2
Q ss_pred ccccHHHHHHHHhccC-CCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCC
Q 003086 166 LEGDTRKIKDWLFEAE-EGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASA 244 (849)
Q Consensus 166 r~~~~~~l~~~L~~~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 244 (849)
....++.+.+++..-. .....+.|+|++|+||||||+.+++.......+ .+++++ ..++...+.........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcCchH
Confidence 3344444444444321 124678999999999999999998842212121 234443 34445444444332211
Q ss_pred CCCHHHHHHHHHHHhcCccEEEEEcCCCc--cCHHHHHHHHhcCCC--CCCceEEEEecc
Q 003086 245 GDDRGELLRKINQYLLGKRYLIVMDDVWG--EDLAWWRRIYEGLPK--GKGSSIIITTRN 300 (849)
Q Consensus 245 ~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~~~l~~~l~~--~~~s~ilvTtr~ 300 (849)
....+. +. +.-+|||||++. .+...-+.+...+.. ..|..||+||..
T Consensus 92 ----~~~~~~----~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 92 ----TKFLKT----VL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp ----SHHHHH----HH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred ----HHHHHH----hc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 122222 22 456899999974 223222333333322 236788888863
No 214
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.82 E-value=0.0001 Score=76.68 Aligned_cols=148 Identities=11% Similarity=0.043 Sum_probs=93.2
Q ss_pred cccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChh-hhcccCceEEEEeCC-ccCHHHHHHHHHHHhcCC
Q 003086 165 GLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDRE-IENWFERRMWVSVSQ-TFTEEQIMRSMLRNLGDA 242 (849)
Q Consensus 165 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~ 242 (849)
|-++.++.+...+..+. .+...++|++|+||||+|+.+.+... .........++..+. ...+..+ +++.+.+...
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~i-r~li~~~~~~ 77 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDI-RTIKDFLNYS 77 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHH-HHHHHHHTSC
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHH-HHHHHHHhhc
Confidence 33455667777776654 67889999999999999999976310 111122334454332 2232222 2333333211
Q ss_pred CCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCCC-CceEEEEecc-hhhhhhccccccccccCCCC
Q 003086 243 SAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK-GSSIIITTRN-GKVSQKMGVKKARMHFPKFL 320 (849)
Q Consensus 243 ~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~s~ilvTtr~-~~v~~~~~~~~~~~~~l~~L 320 (849)
. ..+++-++|+|+++..+....+.+...+...+ .+.+|++|.+ ..+...+... .+++.++
T Consensus 78 p---------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR---~~~f~~l 139 (305)
T 2gno_A 78 P---------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR---VFRVVVN 139 (305)
T ss_dssp C---------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT---SEEEECC
T ss_pred c---------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce---eEeCCCC
Confidence 1 12456799999999877888888888886655 6777666644 3444433332 7889999
Q ss_pred ChhhHHHHHHHHh
Q 003086 321 SEDDSWLLFRKIA 333 (849)
Q Consensus 321 ~~~e~~~lf~~~~ 333 (849)
++++..+.+.+..
T Consensus 140 ~~~~i~~~L~~~~ 152 (305)
T 2gno_A 140 VPKEFRDLVKEKI 152 (305)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998876
No 215
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.81 E-value=0.00016 Score=78.12 Aligned_cols=179 Identities=16% Similarity=0.146 Sum_probs=96.2
Q ss_pred CCCCccccccccHHHHHHHHhcc-----------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCcc
Q 003086 158 YDHTLVVGLEGDTRKIKDWLFEA-----------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTF 226 (849)
Q Consensus 158 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 226 (849)
+.-.++.|.++.+++|.+.+..+ -...+-|.++|++|+|||+||+.+++. ...+| +.|+.+.-
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~--~~~~~---~~v~~~~l- 242 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS--TKAAF---IRVNGSEF- 242 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH--HTCEE---EEEEGGGT-
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCCe---EEEecchh-
Confidence 34457899999999887765421 124567899999999999999999883 33222 33443321
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCc-----------cCH---HHHHHHHh---cCCCC
Q 003086 227 TEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWG-----------EDL---AWWRRIYE---GLPKG 289 (849)
Q Consensus 227 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~-----------~~~---~~~~~l~~---~l~~~ 289 (849)
.....+.+...+...+...-...++++++|+++. .+. .....+.. .+...
T Consensus 243 -------------~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~ 309 (428)
T 4b4t_K 243 -------------VHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS 309 (428)
T ss_dssp -------------CCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS
T ss_pred -------------hccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC
Confidence 1111122233333333333356789999999842 011 11222222 22233
Q ss_pred CCceEEEEecchhhh-hhc-cc-cccccccCCCCC-hhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCch
Q 003086 290 KGSSIIITTRNGKVS-QKM-GV-KKARMHFPKFLS-EDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLP 361 (849)
Q Consensus 290 ~~s~ilvTtr~~~v~-~~~-~~-~~~~~~~l~~L~-~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 361 (849)
.+..||.||...+.. ..+ .. .-...+++..++ .++-.++|..+.-.... ....+ ...|++.+.|.-
T Consensus 310 ~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l--~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 310 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSL--APEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp CSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCB--CTTCC----HHHHHHHTTTCC
T ss_pred CCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCC--CcccC----HHHHHHHCCCCC
Confidence 366677787653321 111 11 111466776564 55555666665532211 11122 356777787764
No 216
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.80 E-value=7.6e-06 Score=80.07 Aligned_cols=115 Identities=22% Similarity=0.309 Sum_probs=61.0
Q ss_pred cHHHHHHHHhccCCC--eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCC
Q 003086 169 DTRKIKDWLFEAEEG--ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGD 246 (849)
Q Consensus 169 ~~~~l~~~L~~~~~~--~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~ 246 (849)
.++.+.+++...... ...+.|+|++|+|||+||+.+++. .......++|++++ .+...+...+.. .
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~----~ 104 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP------ELFRELKHSLQD----Q 104 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH------HHHHHHHHC-------C
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH------HHHHHHHHHhcc----c
Confidence 344555565543221 267899999999999999999884 33334456677653 344444433221 1
Q ss_pred CHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHH--HH-hcCCC--CCCceEEEEecc
Q 003086 247 DRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRR--IY-EGLPK--GKGSSIIITTRN 300 (849)
Q Consensus 247 ~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~--l~-~~l~~--~~~s~ilvTtr~ 300 (849)
........+. + .-+|||||++......|.. +. ..+.. ..+..+|+||..
T Consensus 105 ~~~~~~~~~~----~-~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 105 TMNEKLDYIK----K-VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp CCHHHHHHHH----H-SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred hHHHHHHHhc----C-CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 2233333322 2 2399999996532222211 11 11111 235678888874
No 217
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.00021 Score=76.31 Aligned_cols=180 Identities=14% Similarity=0.067 Sum_probs=100.6
Q ss_pred CCCCccccccccHHHHHHHHhc----c-------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCcc
Q 003086 158 YDHTLVVGLEGDTRKIKDWLFE----A-------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTF 226 (849)
Q Consensus 158 ~~~~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 226 (849)
+.-.++.|.++.+++|.+.+.- + -...+-|.++|++|.|||.||+.+++. ....| +.++.+.
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~-- 251 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSE-- 251 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGG--
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHH--
Confidence 3445788999988888776532 1 123567899999999999999999883 33222 3333331
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCcc-----------CH---HHHHHHHh---cCCCC
Q 003086 227 TEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGE-----------DL---AWWRRIYE---GLPKG 289 (849)
Q Consensus 227 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------~~---~~~~~l~~---~l~~~ 289 (849)
+.....+.+...+...+...-...+++|++|+++.. +. .....+.. .+...
T Consensus 252 ------------l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~ 319 (437)
T 4b4t_I 252 ------------LIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR 319 (437)
T ss_dssp ------------GCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS
T ss_pred ------------hhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC
Confidence 111112222222223333333567899999998531 01 11222222 22223
Q ss_pred CCceEEEEecchhhhh-hccc--cccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchh
Q 003086 290 KGSSIIITTRNGKVSQ-KMGV--KKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPL 362 (849)
Q Consensus 290 ~~s~ilvTtr~~~v~~-~~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PL 362 (849)
.+..||.||...+... .+-. .....+++..-+.++..++|..+.-.... ....+ ...|++.+.|.-=
T Consensus 320 ~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l--~~dvd----l~~LA~~T~GfSG 389 (437)
T 4b4t_I 320 GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNL--SEDVN----LETLVTTKDDLSG 389 (437)
T ss_dssp SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCB--CSCCC----HHHHHHHCCSCCH
T ss_pred CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCC--CCcCC----HHHHHHhCCCCCH
Confidence 3556777776544322 2211 11256788888889989999877632211 11122 3467777877653
No 218
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.76 E-value=0.00023 Score=84.58 Aligned_cols=157 Identities=13% Similarity=0.098 Sum_probs=89.8
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhh---h-cccCceEEE-EeCCccCHHHHHHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREI---E-NWFERRMWV-SVSQTFTEEQIMRSM 235 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~-~~f~~~~wv-~~s~~~~~~~~~~~i 235 (849)
..++||+.+++++++.|.... ...+.|+|.+|+|||++|+.+.+...- . ......+|. .++.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l---------- 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL---------- 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC------------
T ss_pred CCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH----------
Confidence 468999999999999998653 345689999999999999999873110 0 012222321 11100
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHh-cCccEEEEEcCCCcc---------CHHHHHHHHhcCCCCCCceEEEEecchhhhh
Q 003086 236 LRNLGDASAGDDRGELLRKINQYL-LGKRYLIVMDDVWGE---------DLAWWRRIYEGLPKGKGSSIIITTRNGKVSQ 305 (849)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~s~ilvTtr~~~v~~ 305 (849)
+...............+.+.+ ..++.+|++||+... ..+....+...+ ...+..+|.+|.......
T Consensus 254 ---~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l-~~~~~~~I~at~~~~~~~ 329 (758)
T 1r6b_X 254 ---LAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL-SSGKIRVIGSTTYQEFSN 329 (758)
T ss_dssp ----CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCS-SSCCCEEEEEECHHHHHC
T ss_pred ---hccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHH-hCCCeEEEEEeCchHHhh
Confidence 011111123333333333333 345789999999752 122233333333 233556666666544321
Q ss_pred hcc-----ccccccccCCCCChhhHHHHHHHHh
Q 003086 306 KMG-----VKKARMHFPKFLSEDDSWLLFRKIA 333 (849)
Q Consensus 306 ~~~-----~~~~~~~~l~~L~~~e~~~lf~~~~ 333 (849)
... ......+.+.+.+.++..+++....
T Consensus 330 ~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 330 IFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 111 1112468899999999999998765
No 219
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.74 E-value=0.00021 Score=83.37 Aligned_cols=181 Identities=13% Similarity=0.099 Sum_probs=103.2
Q ss_pred CCCCccccccccHHHHHHHHhc----cC-------CCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCcc
Q 003086 158 YDHTLVVGLEGDTRKIKDWLFE----AE-------EGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTF 226 (849)
Q Consensus 158 ~~~~~~vGr~~~~~~l~~~L~~----~~-------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 226 (849)
+.-.++.|.++.+++|.+.+.- ++ ..++-|.++|++|+|||+||+.+++. ...+| +.|+.+
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~--- 272 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP--- 272 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHH---
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhH---
Confidence 3345688999999888876532 21 24567899999999999999999984 33222 344332
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccC-----------HHHHHHHHhc---CCCCCCc
Q 003086 227 TEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGED-----------LAWWRRIYEG---LPKGKGS 292 (849)
Q Consensus 227 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-----------~~~~~~l~~~---l~~~~~s 292 (849)
.+.....+.....+...+.......+.+|+||+++.-. .....++... +....+.
T Consensus 273 -----------~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V 341 (806)
T 3cf2_A 273 -----------EIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp -----------HHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCE
T ss_pred -----------HhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCE
Confidence 11112222333444444444556778999999985410 1112223222 2222244
Q ss_pred eEEEEecch-hhhhhccc--cccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhH
Q 003086 293 SIIITTRNG-KVSQKMGV--KKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLA 363 (849)
Q Consensus 293 ~ilvTtr~~-~v~~~~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLa 363 (849)
-||.||... .+-..+.. .-...+++...+.++-.++|+.+...... ....+ ...|++++.|.--|
T Consensus 342 ~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~--~~dvd----l~~lA~~T~Gfsga 409 (806)
T 3cf2_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL--ADDVD----LEQVANETHGHVGA 409 (806)
T ss_dssp EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE--CTTCC----HHHHHHHCCSCCHH
T ss_pred EEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC--CcccC----HHHHHHhcCCCCHH
Confidence 456666543 22222221 11257888888999999999877532111 11112 35688888887544
No 220
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.72 E-value=1.4e-05 Score=74.78 Aligned_cols=94 Identities=17% Similarity=0.145 Sum_probs=65.6
Q ss_pred hhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccC-ccccCC----CCCcEEeeccccCCc-
Q 003086 550 LATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLP-PSLKKL----KNLQILDVSYCQNLK- 623 (849)
Q Consensus 550 ~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp-~~i~~L----~~L~~L~L~~~~~~~- 623 (849)
+|..+..-..|+.|||++|.++. .-...+..+++|++|+|++|..++.-- ..+..+ ++|++|+|++|..++
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd---~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMS---IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCG---GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred CCcccCCCceEeEEeCcCCCccH---HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 34333333579999999999863 444567889999999999996565411 124443 469999999987543
Q ss_pred cCChhhhcccCCcEeeccCCCCc
Q 003086 624 MLPSYVQSFIQLRALDVTHCGSL 646 (849)
Q Consensus 624 ~lp~~i~~l~~L~~L~l~~~~~~ 646 (849)
.--..+.++++|++|++++|...
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~~I 152 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLPGV 152 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCTTC
T ss_pred HHHHHHhcCCCCCEEECCCCCCC
Confidence 22345678899999999988643
No 221
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.70 E-value=0.00022 Score=77.70 Aligned_cols=62 Identities=11% Similarity=0.155 Sum_probs=31.4
Q ss_pred cccCCCCccceEeccCCCCCcccC-ccccCCCCCcEEeeccccCCccCChhhhcccCCcEeeccCC
Q 003086 579 SQTGSLQHLSYLCLSNTHPLIHLP-PSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHC 643 (849)
Q Consensus 579 ~~~~~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~ 643 (849)
.+|.++++|+.+.+..+ +..++ ..+..+.+|+.+++..+ ....-...+.++..|+.+.+..+
T Consensus 156 ~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS 218 (394)
T ss_dssp TTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred hhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC
Confidence 44566666666666554 22333 23555666666666422 12222334555556665555443
No 222
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.68 E-value=9.5e-06 Score=78.03 Aligned_cols=98 Identities=17% Similarity=0.061 Sum_probs=66.2
Q ss_pred hhhhhhhcCCCcceEEecCCc-ccccc-ccccccccCCCCccceEeccCCCCCcc-----cCccccCCCCCcEEeecccc
Q 003086 548 SNLATKFSECRYLRVLDISRS-IFELP-LKGLLSQTGSLQHLSYLCLSNTHPLIH-----LPPSLKKLKNLQILDVSYCQ 620 (849)
Q Consensus 548 ~~~~~~~~~l~~Lr~L~L~~~-~~~~~-~~~~p~~~~~l~~Lr~L~L~~~~~~~~-----lp~~i~~L~~L~~L~L~~~~ 620 (849)
..+...+...+.|+.|+|++| .+... ...+...+...++|++|+|++| .+.. +...+...++|++|+|++|.
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 345667788899999999998 77531 1123455666788999999988 5542 44445666778888888776
Q ss_pred CCcc----CChhhhcccCCcEeec--cCCCCc
Q 003086 621 NLKM----LPSYVQSFIQLRALDV--THCGSL 646 (849)
Q Consensus 621 ~~~~----lp~~i~~l~~L~~L~l--~~~~~~ 646 (849)
.... +...+...++|++|++ ++|.+.
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 4432 4455666677888888 666654
No 223
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.67 E-value=0.00036 Score=76.76 Aligned_cols=176 Identities=13% Similarity=0.047 Sum_probs=97.1
Q ss_pred CccccccccHHHHHHHHhc---c-------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFE---A-------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQ 230 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~---~-------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 230 (849)
.+++|.++.++++.+.+.. + -...+-|.|+|++|+|||+||+.+++. .... .+.++++.-..
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~---f~~is~~~~~~--- 87 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVP---FFHISGSDFVE--- 87 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCC---EEEEEGGGTTT---
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCC---eeeCCHHHHHH---
Confidence 4689999887777665432 1 011234789999999999999999873 2222 23344332211
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccC--------------HHHHHHHHhcC---CCCCCce
Q 003086 231 IMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGED--------------LAWWRRIYEGL---PKGKGSS 293 (849)
Q Consensus 231 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--------------~~~~~~l~~~l---~~~~~s~ 293 (849)
...+.........+.....+.+.+|+||+++... ......+...+ ....+..
T Consensus 88 -----------~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~vi 156 (476)
T 2ce7_A 88 -----------LFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGII 156 (476)
T ss_dssp -----------CCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEE
T ss_pred -----------HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEE
Confidence 0011112223333444445678999999995411 01223333322 1222566
Q ss_pred EEEEecchhhhh-hc-cc-cccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCch
Q 003086 294 IIITTRNGKVSQ-KM-GV-KKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLP 361 (849)
Q Consensus 294 ilvTtr~~~v~~-~~-~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 361 (849)
||.||...+... .. .. .....+.+...+.++-.+++..++..... ....+ ...|++.+.|..
T Consensus 157 VIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l--~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 157 VMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL--AEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB--CTTCC----HHHHHHTCTTCC
T ss_pred EEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC--cchhh----HHHHHHhcCCCc
Confidence 777776654322 11 11 11136778888888888888877632211 01111 345788888877
No 224
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.66 E-value=6.8e-05 Score=89.04 Aligned_cols=148 Identities=15% Similarity=0.158 Sum_probs=82.1
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcc-----cCceEEEEeCCccCHHHHHHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENW-----FERRMWVSVSQTFTEEQIMRSM 235 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-----f~~~~wv~~s~~~~~~~~~~~i 235 (849)
.+++||+.+++++.+.|.... ..-+.++|++|+|||++|+.+.+. +... ....-++.++-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~--l~~~~~p~~l~~~~~~~~~~----------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDM----------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC-------------
T ss_pred CCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHH--HhcCCCChhhcCCeEEEecc-----------
Confidence 469999999999999997753 334789999999999999999773 2110 01111222111
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCCCCceEEEEecchhh------hhhccc
Q 003086 236 LRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGKGSSIIITTRNGKV------SQKMGV 309 (849)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~s~ilvTtr~~~v------~~~~~~ 309 (849)
+....+.....+...+......++.+|++|. . ......+...+. ....++|.||..... ......
T Consensus 245 ----g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD~--~--~~~~~~L~~~l~-~~~v~~I~at~~~~~~~~~~~d~al~r 315 (758)
T 3pxi_A 245 ----GTKYRGEFEDRLKKVMDEIRQAGNIILFIDA--A--IDASNILKPSLA-RGELQCIGATTLDEYRKYIEKDAALER 315 (758)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEECC------------CCCTT-SSSCEEEEECCTTTTHHHHTTCSHHHH
T ss_pred ----cccccchHHHHHHHHHHHHHhcCCEEEEEcC--c--hhHHHHHHHHHh-cCCEEEEeCCChHHHHHHhhccHHHHh
Confidence 1111111112222333333346778999992 2 222333444443 235667777765442 111111
Q ss_pred cccccccCCCCChhhHHHHHHHHh
Q 003086 310 KKARMHFPKFLSEDDSWLLFRKIA 333 (849)
Q Consensus 310 ~~~~~~~l~~L~~~e~~~lf~~~~ 333 (849)
....+.+...+.++..+++....
T Consensus 316 -Rf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 316 -RFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp -SEEEEECCCCCHHHHHHHHHHTT
T ss_pred -hCcEEEeCCCCHHHHHHHHHHHH
Confidence 11468899999999999998765
No 225
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.65 E-value=0.00023 Score=77.60 Aligned_cols=89 Identities=9% Similarity=0.136 Sum_probs=46.1
Q ss_pred hhhhhcCCCcceEEecCCcccccccccc-ccccCCCCccceEeccCCCCCcccCc-cccCCCCCcEEeeccccCCccCCh
Q 003086 550 LATKFSECRYLRVLDISRSIFELPLKGL-LSQTGSLQHLSYLCLSNTHPLIHLPP-SLKKLKNLQILDVSYCQNLKMLPS 627 (849)
Q Consensus 550 ~~~~~~~l~~Lr~L~L~~~~~~~~~~~~-p~~~~~l~~Lr~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~ 627 (849)
-..+|.+|.+|+.+.++.+.-.. +..+ ..+|..+..|+.+.+..+ +..++. .+..+.+|+.+.+. ......-..
T Consensus 79 g~~AF~~C~~L~~i~~~~n~p~~-l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~i~lp-~~~~~I~~~ 154 (394)
T 4gt6_A 79 GSNAFYNCTSLKRVTIQDNKPSC-VKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDTVTIP-EGVTSVADG 154 (394)
T ss_dssp CTTTTTTCTTCCEEEEGGGCCCC-CCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCEEECC-TTCCEECTT
T ss_pred hHHHhhCCccCceEeecCCCCCe-eeEechhhchhcccceeeccCCc--cceehhhhhhhhccccccccc-ceeeeeccc
Confidence 34567777788777776553110 0112 235566666666666553 333332 35566667766664 222222233
Q ss_pred hhhcccCCcEeeccC
Q 003086 628 YVQSFIQLRALDVTH 642 (849)
Q Consensus 628 ~i~~l~~L~~L~l~~ 642 (849)
.+..+.+|..+.+..
T Consensus 155 ~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 155 MFSYCYSLHTVTLPD 169 (394)
T ss_dssp TTTTCTTCCEEECCT
T ss_pred ceecccccccccccc
Confidence 445555566555543
No 226
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.62 E-value=0.00046 Score=81.89 Aligned_cols=153 Identities=16% Similarity=0.217 Sum_probs=90.8
Q ss_pred CccccccccHHHHHHHHhccC-------CCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEAE-------EGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMR 233 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 233 (849)
..++|.+..++.+...+.... .....+.++|++|+|||++|+.+.+. ....-...+.++++.-.+
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~------ 562 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYME------ 562 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCS------
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhccc------
Confidence 468999999988888876431 12347999999999999999999873 222223345666553221
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCC------------CCceEEEEecch
Q 003086 234 SMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKG------------KGSSIIITTRNG 301 (849)
Q Consensus 234 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~------------~~s~ilvTtr~~ 301 (849)
.... ....+...++. ...-+|+||++.......+..+...+..+ ....||+||...
T Consensus 563 --------~~~~-~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~ 630 (758)
T 3pxi_A 563 --------KHST-SGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVG 630 (758)
T ss_dssp --------SCCC-C---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSS
T ss_pred --------cccc-ccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCC
Confidence 0000 01112222222 33459999999887777777776655431 145788888731
Q ss_pred -----h----hhhhcc----ccccccccCCCCChhhHHHHHHHHh
Q 003086 302 -----K----VSQKMG----VKKARMHFPKFLSEDDSWLLFRKIA 333 (849)
Q Consensus 302 -----~----v~~~~~----~~~~~~~~l~~L~~~e~~~lf~~~~ 333 (849)
. +..... ......+.+.+++.++..+++....
T Consensus 631 ~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 631 ASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp TTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 0 111111 0111377889999999888887765
No 227
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.56 E-value=6.7e-05 Score=70.23 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=20.8
Q ss_pred ccccceeeeecc-CcccchHhhcCCCCCCeEEEEeec
Q 003086 685 TRLRKLGLQLTC-GDEIEEDALVNLRELQFLSISCFD 720 (849)
Q Consensus 685 ~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~L~~~~ 720 (849)
++|+.|++++|. ++...-..+..+++|++|+|+.+.
T Consensus 114 ~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 114 KSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred CCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence 356666666652 443333555666677777776553
No 228
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.50 E-value=3.6e-05 Score=73.90 Aligned_cols=118 Identities=12% Similarity=0.040 Sum_probs=82.2
Q ss_pred hccCccchhcccc-cccccchhhhhhhhhcCCCcceEEecCCcccccc-ccccccccCCCCccceEeccCCCCCcc----
Q 003086 527 SNLKLRALMSTTK-TAEVNNIASNLATKFSECRYLRVLDISRSIFELP-LKGLLSQTGSLQHLSYLCLSNTHPLIH---- 600 (849)
Q Consensus 527 ~~~~lrsl~~~~~-~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~-~~~~p~~~~~l~~Lr~L~L~~~~~~~~---- 600 (849)
.++.+++|.+.+. ..... -...+...+...+.|++|+|++|.+... ...+...+...++|++|+|++| .++.
T Consensus 34 ~~~~L~~L~L~~n~~i~~~-g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~ 111 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVP-TLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGIL 111 (185)
T ss_dssp TCTTCCEEECTTCTTCCHH-HHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHH
T ss_pred cCCCCCEEEecCCCCCCHH-HHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHH
Confidence 4566666666554 32211 1224566778889999999999998631 1123345566789999999999 6654
Q ss_pred -cCccccCCCCCcEEee--ccccCCcc----CChhhhcccCCcEeeccCCCCc
Q 003086 601 -LPPSLKKLKNLQILDV--SYCQNLKM----LPSYVQSFIQLRALDVTHCGSL 646 (849)
Q Consensus 601 -lp~~i~~L~~L~~L~L--~~~~~~~~----lp~~i~~l~~L~~L~l~~~~~~ 646 (849)
+...+...++|++|+| ++|..... +...+...++|++|++++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 5667788889999999 76665433 4456667789999999998754
No 229
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.49 E-value=4.1e-05 Score=70.41 Aligned_cols=86 Identities=12% Similarity=0.054 Sum_probs=51.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCcc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKR 263 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 263 (849)
...++|+|+.|+|||||++.++.... ..=..++++....-... . +..+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~--~~g~~~~~~~~~~~~~~----------------------------~-~~~~~ 84 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQAL--EAGKNAAYIDAASMPLT----------------------------D-AAFEA 84 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHH--TTTCCEEEEETTTSCCC----------------------------G-GGGGC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEcHHHhhHH----------------------------H-HHhCC
Confidence 45789999999999999999987422 11112566655432211 0 11245
Q ss_pred EEEEEcCCCccCHHHHHHHHhcCCC--CCCce-EEEEecc
Q 003086 264 YLIVMDDVWGEDLAWWRRIYEGLPK--GKGSS-IIITTRN 300 (849)
Q Consensus 264 ~LlVlDdv~~~~~~~~~~l~~~l~~--~~~s~-ilvTtr~ 300 (849)
-+|||||+...+....+.+...+.. ..|.. ||+||+.
T Consensus 85 ~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 85 EYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp SEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 6899999976443333344443332 12444 8888873
No 230
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.44 E-value=0.00074 Score=73.46 Aligned_cols=108 Identities=9% Similarity=0.054 Sum_probs=55.6
Q ss_pred hhccCccchhcccccccccchhhhhhhhhcCCCcceEEecCCccccccccccccccCCCCccceEeccCCCCCcccC-cc
Q 003086 526 ISNLKLRALMSTTKTAEVNNIASNLATKFSECRYLRVLDISRSIFELPLKGLLSQTGSLQHLSYLCLSNTHPLIHLP-PS 604 (849)
Q Consensus 526 ~~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~p~~~~~l~~Lr~L~L~~~~~~~~lp-~~ 604 (849)
..|.+|+++.+..... ..+...-...|.++..|+.+.+..+-.. .-...|..+.+|+.+.+..+ +..++ ..
T Consensus 84 ~~C~~L~~i~~~~n~p--~~l~~Ig~~aF~~c~~L~~i~~~~~~~~----I~~~aF~~c~~L~~i~lp~~--~~~I~~~~ 155 (394)
T 4gt6_A 84 YNCTSLKRVTIQDNKP--SCVKKIGRQAFMFCSELTDIPILDSVTE----IDSEAFHHCEELDTVTIPEG--VTSVADGM 155 (394)
T ss_dssp TTCTTCCEEEEGGGCC--CCCCEECTTTTTTCTTCCBCGGGTTCSE----ECTTTTTTCTTCCEEECCTT--CCEECTTT
T ss_pred hCCccCceEeecCCCC--CeeeEechhhchhcccceeeccCCccce----ehhhhhhhhcccccccccce--eeeecccc
Confidence 4567777765543210 0112223456777777777666544211 12245667777777777654 33333 34
Q ss_pred ccCCCCCcEEeeccccCCccCChhhhcccCCcEeeccCC
Q 003086 605 LKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHC 643 (849)
Q Consensus 605 i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~ 643 (849)
+..+.+|+.+.+..+ +..+....-....|..+.+..+
T Consensus 156 F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~ 192 (394)
T 4gt6_A 156 FSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAK 192 (394)
T ss_dssp TTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTT
T ss_pred eecccccccccccce--eeEeccccccccceeEEEECCc
Confidence 566777777777522 3333322222345666665443
No 231
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.42 E-value=3.2e-05 Score=78.29 Aligned_cols=79 Identities=20% Similarity=0.130 Sum_probs=51.5
Q ss_pred CCCCccceEeccCCCCCcc---cCccccCCCCCcEEeeccccCCccCChhhhccc--CCcEeeccCCCCccccCc-----
Q 003086 582 GSLQHLSYLCLSNTHPLIH---LPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFI--QLRALDVTHCGSLQYLPK----- 651 (849)
Q Consensus 582 ~~l~~Lr~L~L~~~~~~~~---lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~--~L~~L~l~~~~~~~~~p~----- 651 (849)
.++++|++|+|++| .+.. +|..+..+++|++|+|++|.... + ..+..+. +|+.|++++|++.+..|.
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKS-E-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCS-G-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCC-c-hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 45778888888888 5554 44556788888888888666433 2 3344444 888888888887654442
Q ss_pred --cccccccccccC
Q 003086 652 --GFGKLLNLEVLL 663 (849)
Q Consensus 652 --~i~~l~~L~~L~ 663 (849)
.+..+++|+.|+
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 144555555554
No 232
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.41 E-value=0.00073 Score=71.54 Aligned_cols=152 Identities=13% Similarity=0.119 Sum_probs=86.7
Q ss_pred ccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcC
Q 003086 162 LVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGD 241 (849)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 241 (849)
.++|+++.++.+...+..+ ..+.++|++|+|||+||+.+.+. .... ...+.+.......++..... ..
T Consensus 28 ~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~--~~~~---~~~i~~~~~~~~~~l~g~~~---~~ 95 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKT--MDLD---FHRIQFTPDLLPSDLIGTMI---YN 95 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHH--TTCC---EEEEECCTTCCHHHHHEEEE---EE
T ss_pred ceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHH--hCCC---eEEEecCCCCChhhcCCcee---ec
Confidence 5789999888888877764 25889999999999999999772 2222 23344443434333321110 00
Q ss_pred CCCCCCHHHHHHHHHHHhcC--ccEEEEEcCCCccCHHHHHHHHhcCCCC-----------C-CceEEEEecchh-----
Q 003086 242 ASAGDDRGELLRKINQYLLG--KRYLIVMDDVWGEDLAWWRRIYEGLPKG-----------K-GSSIIITTRNGK----- 302 (849)
Q Consensus 242 ~~~~~~~~~~~~~l~~~l~~--~~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~-~s~ilvTtr~~~----- 302 (849)
...+ .. .+-.+ ...++++|+++..+......+...+..+ + ...|+.|+....
T Consensus 96 ~~~~-~~--------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~ 166 (331)
T 2r44_A 96 QHKG-NF--------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTY 166 (331)
T ss_dssp TTTT-EE--------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCC
T ss_pred CCCC-ce--------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcc
Confidence 0000 00 00001 1259999999886666666665544321 2 344555555322
Q ss_pred -hhhhccccccccccCCCCChhhHHHHHHHHhh
Q 003086 303 -VSQKMGVKKARMHFPKFLSEDDSWLLFRKIAF 334 (849)
Q Consensus 303 -v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 334 (849)
+....-......+.+.+.+.++-.+++.+...
T Consensus 167 ~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 167 PLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp CCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred cCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 11111111112578888999999999988863
No 233
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.39 E-value=6.4e-05 Score=77.08 Aligned_cols=155 Identities=11% Similarity=0.050 Sum_probs=80.9
Q ss_pred CCccccccccHHHHHHHHhc---c-------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHH
Q 003086 160 HTLVVGLEGDTRKIKDWLFE---A-------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEE 229 (849)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~---~-------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 229 (849)
-.+++|.+..++.+.+.+.. + ....+-+.|+|++|+|||+||+.+++. ....| +.+.++.-.+
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~v~~~~~~~-- 82 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AHVPF---FSMGGSSFIE-- 82 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH--HTCCC---CCCCSCTTTT--
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEechHHHHH--
Confidence 35699999988888776541 1 011234789999999999999999873 22222 1122111100
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHH---------------HHHHHHhcCCC---CC-
Q 003086 230 QIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLA---------------WWRRIYEGLPK---GK- 290 (849)
Q Consensus 230 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~---------------~~~~l~~~l~~---~~- 290 (849)
.+... .......+ +......++.+|+|||++..... ....+...+.. ..
T Consensus 83 --------~~~~~-~~~~~~~~---~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (268)
T 2r62_A 83 --------MFVGL-GASRVRDL---FETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENA 150 (268)
T ss_dssp --------SCSSS-CSSSSSTT---HHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCS
T ss_pred --------hhcch-HHHHHHHH---HHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCC
Confidence 00000 01111111 22222345689999999652111 11122222221 11
Q ss_pred CceEEEEecchhhh-hhccc--cccccccCCCCChhhHHHHHHHHh
Q 003086 291 GSSIIITTRNGKVS-QKMGV--KKARMHFPKFLSEDDSWLLFRKIA 333 (849)
Q Consensus 291 ~s~ilvTtr~~~v~-~~~~~--~~~~~~~l~~L~~~e~~~lf~~~~ 333 (849)
...||.||...... ..... .....+.+...+.++..+++...+
T Consensus 151 ~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 151 PVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp CCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 24466666554321 11111 111467888999999999998776
No 234
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.34 E-value=0.0011 Score=78.61 Aligned_cols=156 Identities=15% Similarity=0.143 Sum_probs=87.6
Q ss_pred CCCccccccccHHHHHHHHhcc-----------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccC
Q 003086 159 DHTLVVGLEGDTRKIKDWLFEA-----------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFT 227 (849)
Q Consensus 159 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 227 (849)
.-.+++|.+..+++|.+++..+ -.....|.|+|++|+||||||+.+... ....| +.++.+.
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~~--- 273 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE--- 273 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHHH---
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEchH---
Confidence 3357999999999998887541 123457899999999999999999873 22222 3333211
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccC-----------HHHHHHHHh---cCCCCCCce
Q 003086 228 EEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGED-----------LAWWRRIYE---GLPKGKGSS 293 (849)
Q Consensus 228 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-----------~~~~~~l~~---~l~~~~~s~ 293 (849)
+.....+.....+...+.........++++|++.... ......+.. .+....+..
T Consensus 274 -----------l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~ 342 (806)
T 1ypw_A 274 -----------IMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp -----------HSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCE
T ss_pred -----------hhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEE
Confidence 1111111122223333333334567899999994310 111222222 222222455
Q ss_pred EEEEecchh-hhhhccc--cccccccCCCCChhhHHHHHHHHh
Q 003086 294 IIITTRNGK-VSQKMGV--KKARMHFPKFLSEDDSWLLFRKIA 333 (849)
Q Consensus 294 ilvTtr~~~-v~~~~~~--~~~~~~~l~~L~~~e~~~lf~~~~ 333 (849)
+|.||.... +...+.. .....+.+...+.++..+++...+
T Consensus 343 vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 666665532 2221111 111456788889999999998775
No 235
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.26 E-value=0.0016 Score=65.86 Aligned_cols=177 Identities=12% Similarity=0.060 Sum_probs=86.3
Q ss_pred CCccccccccHHHHHHHHhc---c------C-CCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHH
Q 003086 160 HTLVVGLEGDTRKIKDWLFE---A------E-EGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEE 229 (849)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~---~------~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 229 (849)
-.+++|.++.+.++.+.... . + .-.+-+.|+|++|+||||||+.++.. .. ...+.+...
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~--~~---~~~i~~~~~------ 83 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--AR---VPFITASGS------ 83 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH--TT---CCEEEEEHH------
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hC---CCEEEeeHH------
Confidence 34688888776666544321 1 0 01122899999999999999999873 22 122333221
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCcc-----------CH---HHHHHHHhcCCCCC---Cc
Q 003086 230 QIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGE-----------DL---AWWRRIYEGLPKGK---GS 292 (849)
Q Consensus 230 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------~~---~~~~~l~~~l~~~~---~s 292 (849)
.+ .... .......+...+...-.....++++|++... .. .....+...+..+. ..
T Consensus 84 ~~----~~~~----~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~ 155 (254)
T 1ixz_A 84 DF----VEMF----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAI 155 (254)
T ss_dssp HH----HHSC----TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCE
T ss_pred HH----HHHH----hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCE
Confidence 11 1100 0001111112222222235689999999431 00 11123333332222 22
Q ss_pred eEEEEecchhhhh-hccc--cccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCch
Q 003086 293 SIIITTRNGKVSQ-KMGV--KKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLP 361 (849)
Q Consensus 293 ~ilvTtr~~~v~~-~~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 361 (849)
-++.||...++.. .... .....+.+...+.++-.+++...+-.... ..... ...+++.+.|.-
T Consensus 156 i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~--~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 156 VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL--AEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCB--CTTCC----HHHHHHTCTTCC
T ss_pred EEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCC--CcccC----HHHHHHHcCCCC
Confidence 3444555444322 1111 11246788888998888888876522110 01111 345777777654
No 236
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.21 E-value=0.00019 Score=74.85 Aligned_cols=54 Identities=11% Similarity=0.097 Sum_probs=34.9
Q ss_pred ccHHHHHHHHhccCC-CeEEEEEEcCCCCcHHHHHHHHhcChhhh-cccCceEEEEeC
Q 003086 168 GDTRKIKDWLFEAEE-GILAIGVVGMGGLGKTTIAQKVFNDREIE-NWFERRMWVSVS 223 (849)
Q Consensus 168 ~~~~~l~~~L~~~~~-~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~s 223 (849)
..++.+.+++..... ....+.|+|++|+|||+||+.+++. .. ..-..+.+++++
T Consensus 135 ~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~--~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 135 EAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHE--LSEKKGVSTTLLHFP 190 (308)
T ss_dssp HHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHH--HHHHSCCCEEEEEHH
T ss_pred HHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEHH
Confidence 344455566665322 2467889999999999999999884 32 222345566543
No 237
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.14 E-value=0.0057 Score=65.92 Aligned_cols=106 Identities=10% Similarity=0.088 Sum_probs=53.5
Q ss_pred hhccccccceeeeeccCcccchHhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEEeccCCCCCCCcCCCCC
Q 003086 681 LKNLTRLRKLGLQLTCGDEIEEDALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSLNFYPGKTSPVWLNPAS 760 (849)
Q Consensus 681 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~ 760 (849)
+..+.+|+.+.+..+ +..+....+..+..|+.+.+..+ ++.. .-..+..+.+|+.+.+...........+ ..
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I----~~~aF~~~~~l~~i~l~~~i~~i~~~aF--~~ 284 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSI----GSFLLQNCTALKTLNFYAKVKTVPYLLC--SG 284 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEE----CTTTTTTCTTCCEEEECCCCSEECTTTT--TT
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEe----Cccccceeehhccccccccceecccccc--cc
Confidence 334455555554432 23344455666777777776532 1111 1123445666777776543332222233 56
Q ss_pred CCCCceEEEeeCCccccccccccCcccccccceeecc
Q 003086 761 LPMLRYLSVCSGNLSKMHDSFWGENNTVWKIEALLFE 797 (849)
Q Consensus 761 l~~L~~L~L~~n~l~~~~~~~~~~~~fp~~L~~L~l~ 797 (849)
+++|+.+.+..+.+..++...+.. +. +|+.+.|.
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~--c~-~L~~i~lp 318 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMD--CV-KLSSVTLP 318 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTT--CT-TCCEEECC
T ss_pred ccccccccccccccceehhhhhcC--CC-CCCEEEcC
Confidence 777777777766666555433322 12 45555543
No 238
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.14 E-value=0.0011 Score=79.63 Aligned_cols=129 Identities=20% Similarity=0.292 Sum_probs=74.1
Q ss_pred ccccccccHHHHHHHHhcc-------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHH
Q 003086 162 LVVGLEGDTRKIKDWLFEA-------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRS 234 (849)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 234 (849)
.++|.+..++.+...+... +.....+.|+|++|+|||++|+.+.+. ....-...+.++++...... .
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~~-~--- 632 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-A--- 632 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSSG-G---
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccchh-H---
Confidence 5789999888888777542 112368899999999999999999773 21111123445544322110 0
Q ss_pred HHHHhcCCCC---CCC-HHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCCC------------CceEEEEe
Q 003086 235 MLRNLGDASA---GDD-RGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGK------------GSSIIITT 298 (849)
Q Consensus 235 i~~~l~~~~~---~~~-~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------~s~ilvTt 298 (849)
...+.+..+ +.+ ...+...++. ...-+|+||++.......+..+...+..+. +..||+||
T Consensus 633 -~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ts 708 (854)
T 1qvr_A 633 -VSRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTS 708 (854)
T ss_dssp -GGGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEEC
T ss_pred -HHHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEec
Confidence 011110000 111 1222223322 334699999998877888888888776542 33477777
Q ss_pred cc
Q 003086 299 RN 300 (849)
Q Consensus 299 r~ 300 (849)
..
T Consensus 709 n~ 710 (854)
T 1qvr_A 709 NL 710 (854)
T ss_dssp CT
T ss_pred Cc
Confidence 64
No 239
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.13 E-value=0.00097 Score=79.22 Aligned_cols=127 Identities=15% Similarity=0.223 Sum_probs=73.4
Q ss_pred CccccccccHHHHHHHHhcc-------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFEA-------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMR 233 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 233 (849)
..++|.+..++.+...+... ......+.++|++|+|||++|+.+.+. .. ...+.++++.......
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~--l~---~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH--HT---CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH--hc---CCEEEEechhhcchhh---
Confidence 35789988888887776532 123457899999999999999999873 21 2234455543321100
Q ss_pred HHHHHhcCCCCCCC----HHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCC------------CCceEEEE
Q 003086 234 SMLRNLGDASAGDD----RGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKG------------KGSSIIIT 297 (849)
Q Consensus 234 ~i~~~l~~~~~~~~----~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~------------~~s~ilvT 297 (849)
...+.+..++.. ...+...++ .....+|+||++.....+.+..+...+..+ ....||+|
T Consensus 530 --~~~l~g~~~g~~g~~~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~t 604 (758)
T 1r6b_X 530 --VSRLIGAPPGYVGFDQGGLLTDAVI---KHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMT 604 (758)
T ss_dssp --CSSSCCCCSCSHHHHHTTHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEE
T ss_pred --HhhhcCCCCCCcCccccchHHHHHH---hCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEe
Confidence 001111111110 011222222 244679999999887777777777665432 13447777
Q ss_pred ecc
Q 003086 298 TRN 300 (849)
Q Consensus 298 tr~ 300 (849)
|..
T Consensus 605 sN~ 607 (758)
T 1r6b_X 605 TNA 607 (758)
T ss_dssp ECS
T ss_pred cCc
Confidence 754
No 240
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.12 E-value=0.002 Score=66.16 Aligned_cols=179 Identities=12% Similarity=0.053 Sum_probs=88.3
Q ss_pred CCCCccccccccHHHHHHHHhc---c------C-CCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccC
Q 003086 158 YDHTLVVGLEGDTRKIKDWLFE---A------E-EGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFT 227 (849)
Q Consensus 158 ~~~~~~vGr~~~~~~l~~~L~~---~------~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 227 (849)
..-.+++|.++.++++.+.... . + .-.+-+.|+|++|+||||||+.++.. .. ...+.+...
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~--~~---~~~i~~~~~---- 107 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--AR---VPFITASGS---- 107 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH--TT---CCEEEEEHH----
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH--cC---CCEEEecHH----
Confidence 3445789988877776554321 1 0 01122899999999999999999873 22 123333321
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCcc-----------C---HHHHHHHHhcCCCCC---
Q 003086 228 EEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGE-----------D---LAWWRRIYEGLPKGK--- 290 (849)
Q Consensus 228 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------~---~~~~~~l~~~l~~~~--- 290 (849)
.+ .... .......+...+...-...+.++|+|++... . ......+...+..+.
T Consensus 108 --~~----~~~~----~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~ 177 (278)
T 1iy2_A 108 --DF----VEMF----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 177 (278)
T ss_dssp --HH----HHST----TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTC
T ss_pred --HH----HHHH----hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCC
Confidence 11 1100 0001111112222222245689999999431 0 111223333333222
Q ss_pred CceEEEEecchhhhh-hccc--cccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCch
Q 003086 291 GSSIIITTRNGKVSQ-KMGV--KKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLP 361 (849)
Q Consensus 291 ~s~ilvTtr~~~v~~-~~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 361 (849)
..-++.||...++.. .... .....+++...+.++-.+++..++-.... .... ....+++.+.|..
T Consensus 178 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~--~~~~----~~~~la~~~~G~~ 245 (278)
T 1iy2_A 178 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL--AEDV----DLALLAKRTPGFV 245 (278)
T ss_dssp CEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCB--CTTC----CHHHHHHTCTTCC
T ss_pred CEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCC--Cccc----CHHHHHHHcCCCC
Confidence 223444555433321 1111 11146788888999888988876522110 0111 1335677777755
No 241
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.10 E-value=0.0008 Score=69.66 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcC
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
.++.+.++|++|+|||+||+.+++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467889999999999999999883
No 242
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.07 E-value=0.0022 Score=65.57 Aligned_cols=153 Identities=14% Similarity=0.112 Sum_probs=79.1
Q ss_pred CCccccccccHHHHHHHHhcc------------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccC
Q 003086 160 HTLVVGLEGDTRKIKDWLFEA------------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFT 227 (849)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 227 (849)
-.++.|.++.++.|.+.+..+ ..... +.|+|++|+||||||+.++.. ... ..+++....-.+
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~--~~~---~~i~i~g~~l~~ 82 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANE--SGL---NFISVKGPELLN 82 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHH--TTC---EEEEEETTTTCS
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHH--cCC---CEEEEEcHHHHh
Confidence 346888888888877654311 11223 899999999999999999873 221 234443322110
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH-hcCccEEEEEcCCCccC-----------HHHHHHHHhcCCCCC---Cc
Q 003086 228 EEQIMRSMLRNLGDASAGDDRGELLRKINQY-LLGKRYLIVMDDVWGED-----------LAWWRRIYEGLPKGK---GS 292 (849)
Q Consensus 228 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~-----------~~~~~~l~~~l~~~~---~s 292 (849)
...+ ........+.+. -...+.++++|++.... ......+...+..+. ..
T Consensus 83 --------------~~~~-~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~ 147 (274)
T 2x8a_A 83 --------------MYVG-ESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQV 147 (274)
T ss_dssp --------------STTH-HHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCE
T ss_pred --------------hhhh-HHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCE
Confidence 0000 001111122221 23457899999986410 011122222232222 33
Q ss_pred eEEEEecchhhhhhc-cc--cccccccCCCCChhhHHHHHHHHh
Q 003086 293 SIIITTRNGKVSQKM-GV--KKARMHFPKFLSEDDSWLLFRKIA 333 (849)
Q Consensus 293 ~ilvTtr~~~v~~~~-~~--~~~~~~~l~~L~~~e~~~lf~~~~ 333 (849)
-++.+|...++.... .. .-...+.+...+.++-.++|+...
T Consensus 148 i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 148 FIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 455566554433211 10 112467788889999999998775
No 243
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.96 E-value=0.00049 Score=70.60 Aligned_cols=69 Identities=20% Similarity=0.285 Sum_probs=47.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEe--CCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcC
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSV--SQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLG 261 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 261 (849)
.+++.|+|++|+|||+||..+... .-..++|+++ .+..+. . ..+.+...+.+.+.+..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~-------------~--~~~le~~l~~i~~~l~~ 182 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG-------------Y--NTDFNVFVDDIARAMLQ 182 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT-------------C--BCCHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh-------------h--hcCHHHHHHHHHHHHhh
Confidence 357789999999999999999763 2234677877 322110 0 13556666666666665
Q ss_pred ccEEEEEcCCCc
Q 003086 262 KRYLIVMDDVWG 273 (849)
Q Consensus 262 ~~~LlVlDdv~~ 273 (849)
.+ +||+|++..
T Consensus 183 ~~-LLVIDsI~a 193 (331)
T 2vhj_A 183 HR-VIVIDSLKN 193 (331)
T ss_dssp CS-EEEEECCTT
T ss_pred CC-EEEEecccc
Confidence 56 999999965
No 244
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.96 E-value=0.0023 Score=68.91 Aligned_cols=45 Identities=27% Similarity=0.336 Sum_probs=33.6
Q ss_pred ccccccccHHHHHHHHhc----------------------------cCCCeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 162 LVVGLEGDTRKIKDWLFE----------------------------AEEGILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~----------------------------~~~~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.++|.+..++.|...+.. .......+.++|++|+|||++|+.+.+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 477888888887766620 011234688999999999999999987
No 245
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.94 E-value=0.0013 Score=74.41 Aligned_cols=161 Identities=15% Similarity=0.128 Sum_probs=78.0
Q ss_pred CccccccccHHHHHHHHhc----cCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHH
Q 003086 161 TLVVGLEGDTRKIKDWLFE----AEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSML 236 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 236 (849)
.+++|.++-.+.+.+.+.- ......++.|+|++|+||||||+.+... ....| .-+.++...+...+.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~--l~~~~---~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS--LGRKF---VRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH--HTCEE---EEECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh--cCCCe---EEEEecccchhhhhhhHHH
Confidence 3578888777777554432 1223568999999999999999999873 22222 2333333222222111111
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHH----HHHHHHhcCCCC----------------CCceEEE
Q 003086 237 RNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLA----WWRRIYEGLPKG----------------KGSSIII 296 (849)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~l~~~----------------~~s~ilv 296 (849)
..++ .........+.. .....-+++||++...... ....+...+... ....||.
T Consensus 156 ~~ig-----~~~~~~~~~~~~-a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ 229 (543)
T 3m6a_A 156 TYVG-----AMPGRIIQGMKK-AGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIA 229 (543)
T ss_dssp -------------CHHHHHHT-TCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEE
T ss_pred HHhc-----cCchHHHHHHHH-hhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEe
Confidence 1111 111111122222 1223348899999764332 223444444211 1235666
Q ss_pred Eecchh-hhhhccccccccccCCCCChhhHHHHHHHHh
Q 003086 297 TTRNGK-VSQKMGVKKARMHFPKFLSEDDSWLLFRKIA 333 (849)
Q Consensus 297 Ttr~~~-v~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 333 (849)
||.... +........ ..+.+.+++.++-.+++.++.
T Consensus 230 ttN~~~~l~~aL~~R~-~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 230 TANNLATIPGPLRDRM-EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp ECSSTTTSCHHHHHHE-EEEECCCCCHHHHHHHHHHTH
T ss_pred ccCccccCCHHHHhhc-ceeeeCCCCHHHHHHHHHHHH
Confidence 665432 111111111 367889999999888887765
No 246
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.89 E-value=0.0022 Score=70.94 Aligned_cols=175 Identities=12% Similarity=0.046 Sum_probs=91.6
Q ss_pred CCCCccccccccHHHHHHHHh---ccC-------CCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccC
Q 003086 158 YDHTLVVGLEGDTRKIKDWLF---EAE-------EGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFT 227 (849)
Q Consensus 158 ~~~~~~vGr~~~~~~l~~~L~---~~~-------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 227 (849)
..-.+++|.++.++++.+... .+. .-.+-|.|+|++|+||||||+.++.. .. ...+.++.+.-..
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~--~~---~~~i~i~g~~~~~ 102 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--AR---VPFITASGSDFVE 102 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH--TT---CCEEEEEGGGGTS
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hC---CCEEEEehhHHHH
Confidence 344578999987777765542 211 01223899999999999999999873 22 1234444332110
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcC----ccEEEEEcCCCccC----------H----HHHHHHHhcCCCC
Q 003086 228 EEQIMRSMLRNLGDASAGDDRGELLRKINQYLLG----KRYLIVMDDVWGED----------L----AWWRRIYEGLPKG 289 (849)
Q Consensus 228 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~----~~~LlVlDdv~~~~----------~----~~~~~l~~~l~~~ 289 (849)
. ........++..++. .+.++++|++.... . .....+...+...
T Consensus 103 --------------~----~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 103 --------------M----FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp --------------S----CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC
T ss_pred --------------h----hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc
Confidence 0 011112233333322 34799999995310 1 1223333333322
Q ss_pred C---CceEEEEecchhhhh-hccc--cccccccCCCCChhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCch
Q 003086 290 K---GSSIIITTRNGKVSQ-KMGV--KKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLP 361 (849)
Q Consensus 290 ~---~s~ilvTtr~~~v~~-~~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 361 (849)
. +..|+.||...++.. .... .....+.+...+.++-.+++..++-... ..++ .....|++.+.|..
T Consensus 165 ~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~----l~~d--v~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 165 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP----LAED--VDLALLAKRTPGFV 236 (499)
T ss_dssp CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSC----CCCS--STTHHHHTTSCSCC
T ss_pred ccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCC----CChH--HHHHHHHHhcCCCC
Confidence 2 344555665544322 1111 1114677888888988998877652111 1111 11345777777765
No 247
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.84 E-value=0.0033 Score=61.88 Aligned_cols=84 Identities=18% Similarity=0.171 Sum_probs=52.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcC-----------CCC--CCCHHH
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGD-----------ASA--GDDRGE 250 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-----------~~~--~~~~~~ 250 (849)
-.++.|+|.+|+||||||..+.. ..-..++|++....++...+.. +.+.++. ... ..+..+
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 35899999999999999999976 1224578888776556655443 3333222 111 112233
Q ss_pred HHHHHHHHhcCccEEEEEcCCCc
Q 003086 251 LLRKINQYLLGKRYLIVMDDVWG 273 (849)
Q Consensus 251 ~~~~l~~~l~~~~~LlVlDdv~~ 273 (849)
....++..+..+.-+||+|.+..
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcHH
Confidence 44555555544577999998754
No 248
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.74 E-value=0.001 Score=65.12 Aligned_cols=110 Identities=15% Similarity=0.023 Sum_probs=64.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCC---CCCHHHHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASA---GDDRGELLRKINQYLL 260 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~l~~~l~ 260 (849)
-.++.|+|..|.||||++..+.+. ...+-..++.+...... . ....+++.++.... .....++.+.+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 468899999999999999888763 33333344444433221 1 12234444543322 1233455555555444
Q ss_pred Ccc-EEEEEcCCCccCHHHHHHHHhcCCCCCCceEEEEecc
Q 003086 261 GKR-YLIVMDDVWGEDLAWWRRIYEGLPKGKGSSIIITTRN 300 (849)
Q Consensus 261 ~~~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~s~ilvTtr~ 300 (849)
+.+ -+||+|.+...+.+..+.+..... .|..||+|.+.
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l~~L~~--~gi~Vil~Gl~ 125 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVANILAE--NGFVVIISGLD 125 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHHHHHHH--TTCEEEEECCS
T ss_pred CCCCCEEEEecCccCcHHHHHHHHHHHh--CCCeEEEEecc
Confidence 444 499999997654555555543222 27889999985
No 249
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.68 E-value=0.01 Score=63.01 Aligned_cols=167 Identities=10% Similarity=-0.062 Sum_probs=105.4
Q ss_pred HHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHH
Q 003086 172 KIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGEL 251 (849)
Q Consensus 172 ~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 251 (849)
++.+.+. + .-.++..++|..|.||++.|+.+.... ....|+....+.+....++ .++
T Consensus 8 ~l~~~l~-~-~~~~~yl~~G~e~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~--------------------~~l 64 (343)
T 1jr3_D 8 QLRAQLN-E-GLRAAYLLLGNDPLLLQESQDAVRQVA-AAQGFEEHHTFSIDPNTDW--------------------NAI 64 (343)
T ss_dssp THHHHHH-H-CCCSEEEEEESCHHHHHHHHHHHHHHH-HHHTCCEEEEEECCTTCCH--------------------HHH
T ss_pred HHHHHHh-c-CCCcEEEEECCcHHHHHHHHHHHHHHH-HhCCCCeeEEEEecCCCCH--------------------HHH
Confidence 3444444 2 235688999999999999999887631 1223432222223323333 333
Q ss_pred HHHHHH-HhcCccEEEEEcCCCc-cCHHHHHHHHhcCCCCC-CceEEEEecc-------hhhhhhccccccccccCCCCC
Q 003086 252 LRKINQ-YLLGKRYLIVMDDVWG-EDLAWWRRIYEGLPKGK-GSSIIITTRN-------GKVSQKMGVKKARMHFPKFLS 321 (849)
Q Consensus 252 ~~~l~~-~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~~-~s~ilvTtr~-------~~v~~~~~~~~~~~~~l~~L~ 321 (849)
.+.+.. -+-+.+-++|+|+++. .+...++.+...+..-+ ++.+|++|.. ..+...+.... ..++..+++
T Consensus 65 ~~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~-~~~~~~~l~ 143 (343)
T 1jr3_D 65 FSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRS-VQVTCQTPE 143 (343)
T ss_dssp HHHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTC-EEEEECCCC
T ss_pred HHHhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCc-eEEEeeCCC
Confidence 333322 1346677899999876 55677888888887655 7777766643 23444443333 578889999
Q ss_pred hhhHHHHHHHHhhccCCCCCCCCchhHHHHHHHHhcCCchhHHHHH
Q 003086 322 EDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAV 367 (849)
Q Consensus 322 ~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 367 (849)
.++....+.+.+-..+ ..-.++.+..+++.++|.+.++...
T Consensus 144 ~~~l~~~l~~~~~~~g-----~~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 144 QAQLPRWVAARAKQLN-----LELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp TTHHHHHHHHHHHHTT-----CEECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHhchHHHHHHHH
Confidence 9999988888763321 1223567888999999998876653
No 250
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.67 E-value=0.0039 Score=66.41 Aligned_cols=44 Identities=23% Similarity=0.213 Sum_probs=32.0
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+++|.+..++.+...+..+. ..-|.|+|++|+|||+||+.+.+
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHH
Confidence 458999886655444443322 22488999999999999999976
No 251
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.60 E-value=0.0058 Score=64.37 Aligned_cols=84 Identities=20% Similarity=0.250 Sum_probs=57.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCC------CCCHHHHHHHHH
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASA------GDDRGELLRKIN 256 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~ 256 (849)
.-.++.|+|++|+||||||..+... ....=..++|++....++.. .++.++.... ..+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 3579999999999999999999873 22222357899887777654 4555554321 346666666666
Q ss_pred HHhc-CccEEEEEcCCCc
Q 003086 257 QYLL-GKRYLIVMDDVWG 273 (849)
Q Consensus 257 ~~l~-~~~~LlVlDdv~~ 273 (849)
..+. .+.-++|+|.+..
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 6553 4556899998754
No 252
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.50 E-value=0.01 Score=60.54 Aligned_cols=81 Identities=14% Similarity=0.176 Sum_probs=55.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcChhhhcc--cCceEEEEeCCccCHHHHHHHHHHHhcCCCC------CCCHHHH-HHHHH
Q 003086 186 AIGVVGMGGLGKTTIAQKVFNDREIENW--FERRMWVSVSQTFTEEQIMRSMLRNLGDASA------GDDRGEL-LRKIN 256 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~~~~~~~~--f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------~~~~~~~-~~~l~ 256 (849)
++-|.|++|+||||||..++.. .... =..++||+..+.++.. .++.++.... +.+.++. .+.+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 7899999999999999888763 2222 2458899988888764 3677776532 3455555 44333
Q ss_pred HH--h-cCccEEEEEcCCCc
Q 003086 257 QY--L-LGKRYLIVMDDVWG 273 (849)
Q Consensus 257 ~~--l-~~~~~LlVlDdv~~ 273 (849)
.. + .++.-+||+|-+..
T Consensus 103 ~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTT
T ss_pred HHHHhhccCceEEEEecccc
Confidence 32 2 45678999999855
No 253
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.18 E-value=0.0094 Score=59.11 Aligned_cols=112 Identities=19% Similarity=0.146 Sum_probs=61.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCC--------------------
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASA-------------------- 244 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-------------------- 244 (849)
.+++|+|.+|+|||||++.+... ....-..+.|+.... ....+...+. .++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~--~~~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAK--GLRDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH--HHHHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH--HHHCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCce
Confidence 58899999999999999999853 222223466766543 3444444332 3332110
Q ss_pred ----CCCHHHHHHHHHHHhcC-c--cEEEEEcCCCcc---CHHHHHHHHhcCC---CCCCceEEEEecch
Q 003086 245 ----GDDRGELLRKINQYLLG-K--RYLIVMDDVWGE---DLAWWRRIYEGLP---KGKGSSIIITTRNG 301 (849)
Q Consensus 245 ----~~~~~~~~~~l~~~l~~-~--~~LlVlDdv~~~---~~~~~~~l~~~l~---~~~~s~ilvTtr~~ 301 (849)
..+..++...+.+.+.. + ..+||+|..... +......+...+. ...|..||++|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 11445555555554422 3 349999998631 2222222222222 12377888888754
No 254
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.12 E-value=0.019 Score=60.61 Aligned_cols=90 Identities=13% Similarity=0.232 Sum_probs=55.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcChhhhc----ccCceEEEEeCCccCHHHHHHHHHHHhcCCC-------------CC
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFNDREIEN----WFERRMWVSVSQTFTEEQIMRSMLRNLGDAS-------------AG 245 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-------------~~ 245 (849)
.-.++.|+|.+|+||||||..++....... .-..++|++....++.+.+.. ++..++... ..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCH
Confidence 457999999999999999998876321111 224688999988877776554 344544321 01
Q ss_pred CCHHHHHHHHHHHhc---CccEEEEEcCCCc
Q 003086 246 DDRGELLRKINQYLL---GKRYLIVMDDVWG 273 (849)
Q Consensus 246 ~~~~~~~~~l~~~l~---~~~~LlVlDdv~~ 273 (849)
....++...+.+.+. .+.-+||+|.+..
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 122233334444443 4556888888753
No 255
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.08 E-value=0.033 Score=52.18 Aligned_cols=20 Identities=35% Similarity=0.506 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCcHHHHHHHH
Q 003086 185 LAIGVVGMGGLGKTTIAQKV 204 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v 204 (849)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999998
No 256
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.07 E-value=0.015 Score=58.02 Aligned_cols=89 Identities=15% Similarity=0.197 Sum_probs=53.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhc----ccCceEEEEeCCccCHHHHHHHHHHHhcCCC----------CCCCHH
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIEN----WFERRMWVSVSQTFTEEQIMRSMLRNLGDAS----------AGDDRG 249 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~----------~~~~~~ 249 (849)
-.++.|+|++|+|||||+..+........ .-..++|++....++...+. ++++.++... ...+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 35899999999999999999876311111 12468888887765555443 3444444321 012223
Q ss_pred HH---HHHHHHHhc-CccEEEEEcCCCc
Q 003086 250 EL---LRKINQYLL-GKRYLIVMDDVWG 273 (849)
Q Consensus 250 ~~---~~~l~~~l~-~~~~LlVlDdv~~ 273 (849)
+. ...+.+.+. .+.-+||+|++..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 22 233444443 4667889998854
No 257
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.07 E-value=0.016 Score=61.20 Aligned_cols=83 Identities=20% Similarity=0.233 Sum_probs=55.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCC------CCCHHHHHHHHHH
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASA------GDDRGELLRKINQ 257 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~ 257 (849)
-.++.|+|.+|+||||||..+... ....=..++|++....++.. .++.++.... ..+.++..+.+..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 458999999999999999998763 22222458899988777653 2455554321 3356666665555
Q ss_pred Hhc-CccEEEEEcCCCc
Q 003086 258 YLL-GKRYLIVMDDVWG 273 (849)
Q Consensus 258 ~l~-~~~~LlVlDdv~~ 273 (849)
... .+.-+||+|.+..
T Consensus 134 l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHTTTCCSEEEEECGGG
T ss_pred HHhcCCCCEEEEcChHh
Confidence 543 3466999999854
No 258
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.99 E-value=0.019 Score=60.83 Aligned_cols=83 Identities=18% Similarity=0.195 Sum_probs=56.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCC------CCCCHHHHHHHHHH
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDAS------AGDDRGELLRKINQ 257 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~ 257 (849)
..++.|.|.+|+||||||..+... ....-..++|++....++.. .++.++... ...+.+++.+.+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 357889999999999999988763 22222468999998877654 244554432 13466677776766
Q ss_pred Hhc-CccEEEEEcCCCc
Q 003086 258 YLL-GKRYLIVMDDVWG 273 (849)
Q Consensus 258 ~l~-~~~~LlVlDdv~~ 273 (849)
... ...-+||+|.+..
T Consensus 147 l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHTTTCCSEEEEECTTT
T ss_pred HHhcCCCCEEEEeChHH
Confidence 654 3456999999843
No 259
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.95 E-value=0.025 Score=59.23 Aligned_cols=89 Identities=19% Similarity=0.235 Sum_probs=56.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcc----cCceEEEEeCCccCHHHHHHHHHHHhcCCC----------CCCCHH
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENW----FERRMWVSVSQTFTEEQIMRSMLRNLGDAS----------AGDDRG 249 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~----------~~~~~~ 249 (849)
-.++.|+|.+|+||||||..++........ -..++|++....++.+.+.. +++.++... ...+.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHH
Confidence 358999999999999999988763211110 24688999988877776653 445554421 012233
Q ss_pred ---HHHHHHHHHhc--CccEEEEEcCCCc
Q 003086 250 ---ELLRKINQYLL--GKRYLIVMDDVWG 273 (849)
Q Consensus 250 ---~~~~~l~~~l~--~~~~LlVlDdv~~ 273 (849)
++...+...+. .+.-+||+|.+..
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 23444555553 4567889998854
No 260
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.95 E-value=0.0071 Score=56.83 Aligned_cols=54 Identities=4% Similarity=-0.051 Sum_probs=34.5
Q ss_pred HHHHHhcCccEEEEEcCCCc-cCHH----------------HHHHHHhcCCCC-C-CceEEEEecchhhhhhc
Q 003086 254 KINQYLLGKRYLIVMDDVWG-EDLA----------------WWRRIYEGLPKG-K-GSSIIITTRNGKVSQKM 307 (849)
Q Consensus 254 ~l~~~l~~~~~LlVlDdv~~-~~~~----------------~~~~l~~~l~~~-~-~s~ilvTtr~~~v~~~~ 307 (849)
.+...+..++-+++||.-.. .+.. ....+...+..- . |..||++|.+.+.+..+
T Consensus 93 ~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~ 165 (171)
T 4gp7_A 93 EMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEV 165 (171)
T ss_dssp HHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHE
T ss_pred HHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhh
Confidence 45566778889999998643 1122 345566666542 2 77888888876655443
No 261
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.93 E-value=0.02 Score=60.56 Aligned_cols=83 Identities=19% Similarity=0.185 Sum_probs=54.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCC------CCCHHHHHHHHHH
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASA------GDDRGELLRKINQ 257 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~ 257 (849)
..++.|.|.+|+||||||..+... ....-..++|++....++... +..++.... ..+.+++.+.+..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 458999999999999999988763 222224688999988776442 444544321 2345555555554
Q ss_pred Hh-cCccEEEEEcCCCc
Q 003086 258 YL-LGKRYLIVMDDVWG 273 (849)
Q Consensus 258 ~l-~~~~~LlVlDdv~~ 273 (849)
.. ..+.-+||+|.+..
T Consensus 136 l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 136 LARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHTCCSEEEEECGGG
T ss_pred HHhccCCCEEEEcCHHH
Confidence 43 34456999999744
No 262
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.67 E-value=0.017 Score=60.61 Aligned_cols=90 Identities=20% Similarity=0.266 Sum_probs=56.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcChhhhc---------cc-----CceEEEEeCCccCHHHHHHHHHHHhcCCC-----
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFNDREIEN---------WF-----ERRMWVSVSQTFTEEQIMRSMLRNLGDAS----- 243 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---------~f-----~~~~wv~~s~~~~~~~~~~~i~~~l~~~~----- 243 (849)
.-.++.|+|.+|+||||||..++....... .. ..++|++....++.+.+.. +++.++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 347899999999999999998875321111 11 3688999988887776664 345554421
Q ss_pred -----CCCCHH---HHHHHHHHHhc--CccEEEEEcCCCc
Q 003086 244 -----AGDDRG---ELLRKINQYLL--GKRYLIVMDDVWG 273 (849)
Q Consensus 244 -----~~~~~~---~~~~~l~~~l~--~~~~LlVlDdv~~ 273 (849)
...+.+ ++.+.+.+.+. .+.-+||+|.+..
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 215 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTS 215 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSH
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 012333 23444555554 3456888888753
No 263
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.59 E-value=0.044 Score=56.54 Aligned_cols=38 Identities=16% Similarity=0.070 Sum_probs=26.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccC-ceEEEEeC
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFE-RRMWVSVS 223 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s 223 (849)
-.+++|+|.+|+|||||++.++.. ....-. .++|++..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~--~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQ--WGTAMGKKVGLAMLE 73 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH--HHHTSCCCEEEEESS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH--HHHHcCCeEEEEeCc
Confidence 358999999999999999998763 222212 46666543
No 264
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.58 E-value=0.016 Score=64.18 Aligned_cols=105 Identities=15% Similarity=0.161 Sum_probs=56.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcChhhhccc-CceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHH---------
Q 003086 186 AIGVVGMGGLGKTTIAQKVFNDREIENWF-ERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKI--------- 255 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l--------- 255 (849)
.+.|.|.+|+||||++..+... ....- ..++.++.+ . .....|.+.++... .+.......-
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~--l~~~~~~~il~~a~T-~----~Aa~~l~~~~~~~~--~T~h~~~~~~~~~~~~~~~ 117 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEA--LISTGETGIILAAPT-H----AAKKILSKLSGKEA--STIHSILKINPVTYEENVL 117 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH--HHHTTCCCEEEEESS-H----HHHHHHHHHHSSCE--EEHHHHHTEEEEECSSCEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHH--HHhcCCceEEEecCc-H----HHHHHHHhhhccch--hhHHHHhccCcccccccch
Confidence 8899999999999999988773 22222 233443322 1 12222222222111 0111100000
Q ss_pred ---H-HHhcCccEEEEEcCCCccCHHHHHHHHhcCCCCCCceEEEEecch
Q 003086 256 ---N-QYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGKGSSIIITTRNG 301 (849)
Q Consensus 256 ---~-~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~s~ilvTtr~~ 301 (849)
. .....+.-+||+|++...+...+..+...++ .+.+|++..=..
T Consensus 118 ~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~--~~~~~~~vGD~~ 165 (459)
T 3upu_A 118 FEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP--PWCTIIGIGDNK 165 (459)
T ss_dssp EEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC--TTCEEEEEECTT
T ss_pred hcccccccccCCCEEEEECchhCCHHHHHHHHHhcc--CCCEEEEECCHH
Confidence 0 0000123589999998877788888888775 466777766443
No 265
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.45 E-value=0.048 Score=58.57 Aligned_cols=79 Identities=11% Similarity=0.147 Sum_probs=33.0
Q ss_pred ccCCCCccceEeccCCCCCcccC-ccccCCCCCcEEeeccccCCccC-ChhhhcccCCcEeeccCCCCccccCccccccc
Q 003086 580 QTGSLQHLSYLCLSNTHPLIHLP-PSLKKLKNLQILDVSYCQNLKML-PSYVQSFIQLRALDVTHCGSLQYLPKGFGKLL 657 (849)
Q Consensus 580 ~~~~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~ 657 (849)
.+..+..|+.+.+..+ +..++ ..+.++.+|+.+.+. .. +..+ ...+.++.+|+.+.+.++.+.......|..++
T Consensus 235 ~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~-~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~ 310 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFY-AK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV 310 (379)
T ss_dssp TTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEEC-CC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred cccCCccceEEEcCCC--ccEeCccccceeehhcccccc-cc-ceeccccccccccccccccccccccceehhhhhcCCC
Confidence 3444555555555443 22222 234445555555553 11 2222 22344555555555544433322223344444
Q ss_pred ccccc
Q 003086 658 NLEVL 662 (849)
Q Consensus 658 ~L~~L 662 (849)
+|+.+
T Consensus 311 ~L~~i 315 (379)
T 4h09_A 311 KLSSV 315 (379)
T ss_dssp TCCEE
T ss_pred CCCEE
Confidence 44443
No 266
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.38 E-value=0.021 Score=54.17 Aligned_cols=111 Identities=18% Similarity=0.072 Sum_probs=58.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCC---ccCHHHHHHHHHHHhcCC-------C--CCC------
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQ---TFTEEQIMRSMLRNLGDA-------S--AGD------ 246 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~i~~~l~~~-------~--~~~------ 246 (849)
..|.|++..|.||||+|-...- +.-.+=-.+.++..-. ......++.. +... . ...
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~----L~v~~~~~g~gf~~~~~~~~~~~ 102 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEP----HGVEFQVMATGFTWETQNREADT 102 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGG----GTCEEEECCTTCCCCGGGHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHh----CCcEEEEcccccccCCCCcHHHH
Confidence 4567777777999999977755 2323323455554332 2223333333 3100 0 000
Q ss_pred -CHHHHHHHHHHHhcC-ccEEEEEcCCCc---cCHHHHHHHHhcCCCCC-CceEEEEecch
Q 003086 247 -DRGELLRKINQYLLG-KRYLIVMDDVWG---EDLAWWRRIYEGLPKGK-GSSIIITTRNG 301 (849)
Q Consensus 247 -~~~~~~~~l~~~l~~-~~~LlVlDdv~~---~~~~~~~~l~~~l~~~~-~s~ilvTtr~~ 301 (849)
.........++.+.+ +-=|||||++.. ...-..+.+...+...+ ...||+|+|..
T Consensus 103 ~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 103 AACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 111223334455544 445999999832 01122234555555555 78999999983
No 267
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.37 E-value=0.037 Score=59.38 Aligned_cols=89 Identities=18% Similarity=0.206 Sum_probs=52.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhh----hcccCceEEEEeCCccCHHHHHHHHHHHhcCCCC----------CCCHH
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREI----ENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASA----------GDDRG 249 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----------~~~~~ 249 (849)
-.++.|+|.+|+|||||+..++-.... ...-..++|++....++...+ ..+++.++.... ..+..
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCChH
Confidence 358999999999999999976421111 112245889988776665544 335565554210 12222
Q ss_pred H---HHHHHHHHh-cCccEEEEEcCCCc
Q 003086 250 E---LLRKINQYL-LGKRYLIVMDDVWG 273 (849)
Q Consensus 250 ~---~~~~l~~~l-~~~~~LlVlDdv~~ 273 (849)
. ....+.+.+ ..+.-+||+|.+-.
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 2 223333333 34677999999743
No 268
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.35 E-value=0.012 Score=57.39 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=27.5
Q ss_pred HHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 170 TRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 170 ~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.++|.+.+........+|+|+|+.|.|||||++.+..
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444455443323467999999999999999999876
No 269
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.29 E-value=0.13 Score=53.56 Aligned_cols=52 Identities=12% Similarity=0.113 Sum_probs=38.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHh
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNL 239 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 239 (849)
-.++.|.|.+|+||||+|..++.+...++ ..++|++.. .+.+++...++...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 45899999999999999999876422222 567787765 56778888877654
No 270
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.27 E-value=0.003 Score=60.14 Aligned_cols=106 Identities=11% Similarity=0.081 Sum_probs=51.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCC---CCCHHHHHHHHHHHhcC
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASA---GDDRGELLRKINQYLLG 261 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~l~~~l~~ 261 (849)
.++.|+|+.|+||||++..+.......+ ..+.++....+ ...-...+...++.... ..+..+ +.+.+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g--~~v~~~~~~~d--~r~~~~~i~s~~g~~~~~~~~~~~~~----~~~~~~~ 75 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGK--KKVAVFKPKID--SRYHSTMIVSHSGNGVEAHVIERPEE----MRKYIEE 75 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT--CEEEEEEEC-------CCCEECC----CEECEEESSGGG----GGGGCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeeccc--cccCcccEEecCCCceeeEEECCHHH----HHHHhcC
Confidence 4788999999999999966654321111 12333332211 00000000111111100 011111 2222334
Q ss_pred ccEEEEEcCCCccCHHHHHHHHhcCCCCCCceEEEEecc
Q 003086 262 KRYLIVMDDVWGEDLAWWRRIYEGLPKGKGSSIIITTRN 300 (849)
Q Consensus 262 ~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~s~ilvTtr~ 300 (849)
+.-+|++|.+...+.+..+.+....+. +..|++|.+.
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~--~~~Vi~~Gl~ 112 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDR--GIDVFCAGLD 112 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHT--TCEEEEEEES
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHC--CCCEEEEeec
Confidence 556999999987544444555444333 7789998874
No 271
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.25 E-value=0.015 Score=56.32 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=32.2
Q ss_pred ccccHHHHHHHHhcc-CCCeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 166 LEGDTRKIKDWLFEA-EEGILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 166 r~~~~~~l~~~L~~~-~~~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
|++.++.+.+.+... .....+|+|+|..|.||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 455677777777653 23467999999999999999999876
No 272
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.24 E-value=0.19 Score=49.43 Aligned_cols=52 Identities=17% Similarity=0.219 Sum_probs=33.3
Q ss_pred HHHHHhcCccEEEEEcCCCc-cCHHHHHHHHhc-CCCC-CCceEEEEecchhhhh
Q 003086 254 KINQYLLGKRYLIVMDDVWG-EDLAWWRRIYEG-LPKG-KGSSIIITTRNGKVSQ 305 (849)
Q Consensus 254 ~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~-l~~~-~~s~ilvTtr~~~v~~ 305 (849)
.+...+-.++-+++||+--. -|...-..+... +... .+..||++|.+.+.+.
T Consensus 140 ~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~ 194 (229)
T 2pze_A 140 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK 194 (229)
T ss_dssp HHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH
T ss_pred HHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH
Confidence 34455666677999999754 345556666664 3332 3677888888766554
No 273
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.10 E-value=0.097 Score=51.85 Aligned_cols=51 Identities=16% Similarity=0.167 Sum_probs=31.9
Q ss_pred HHHHhcCccEEEEEcCCCc-cCHHHHHHHHhcCC---C-CCCceEEEEecchhhhh
Q 003086 255 INQYLLGKRYLIVMDDVWG-EDLAWWRRIYEGLP---K-GKGSSIIITTRNGKVSQ 305 (849)
Q Consensus 255 l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~---~-~~~s~ilvTtr~~~v~~ 305 (849)
+...+-.++-+++||+--. -|......+...+. . ..|..||++|.+...+.
T Consensus 138 lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~ 193 (237)
T 2cbz_A 138 LARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP 193 (237)
T ss_dssp HHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG
T ss_pred HHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH
Confidence 3444555667889999754 34555566666552 2 23677888888755544
No 274
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.03 E-value=0.0057 Score=72.48 Aligned_cols=157 Identities=13% Similarity=0.111 Sum_probs=84.1
Q ss_pred CCCCccccccccHHHHHHHHhccC-----------CCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCcc
Q 003086 158 YDHTLVVGLEGDTRKIKDWLFEAE-----------EGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTF 226 (849)
Q Consensus 158 ~~~~~~vGr~~~~~~l~~~L~~~~-----------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 226 (849)
..-.++.|.++.++.+.+.+..+. .....+.++|++|+||||||+.++.. ....| +.+..+.-
T Consensus 474 v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~--~~~~~---i~v~~~~l- 547 (806)
T 1ypw_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQANF---ISIKGPEL- 547 (806)
T ss_dssp CSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHH--HTCCC---CCCCCSSS-
T ss_pred ccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHH--hCCCE---EEEechHh-
Confidence 344568899888888887765320 13456889999999999999999873 32222 11222111
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCcc--------------CHHHHHHHHhcCCCC--C
Q 003086 227 TEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGE--------------DLAWWRRIYEGLPKG--K 290 (849)
Q Consensus 227 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--------------~~~~~~~l~~~l~~~--~ 290 (849)
.....+.....+...+...-...+.++++|+++.. .......+...+... .
T Consensus 548 -------------~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~ 614 (806)
T 1ypw_A 548 -------------LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 614 (806)
T ss_dssp -------------TTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-----
T ss_pred -------------hhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccccc
Confidence 01111222222222233222334579999998531 011233444444321 1
Q ss_pred -CceEEEEecchh-hhhhccc--cccccccCCCCChhhHHHHHHHHh
Q 003086 291 -GSSIIITTRNGK-VSQKMGV--KKARMHFPKFLSEDDSWLLFRKIA 333 (849)
Q Consensus 291 -~s~ilvTtr~~~-v~~~~~~--~~~~~~~l~~L~~~e~~~lf~~~~ 333 (849)
+..||.||...+ +-...-. .....+.+...+.++..++++.+.
T Consensus 615 ~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l 661 (806)
T 1ypw_A 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp -CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTT
T ss_pred CCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHh
Confidence 445566665432 2222211 111366777788888888887765
No 275
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.02 E-value=0.015 Score=64.42 Aligned_cols=42 Identities=17% Similarity=0.100 Sum_probs=35.4
Q ss_pred ccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcC
Q 003086 162 LVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
.++|.++.++.+...+..+. .|.|+|++|+|||+||+.+.+.
T Consensus 23 ~ivGq~~~i~~l~~al~~~~----~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTC----EEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcCC----eeEeecCchHHHHHHHHHHHHH
Confidence 47899988888887777653 6889999999999999999873
No 276
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.94 E-value=0.052 Score=63.34 Aligned_cols=98 Identities=15% Similarity=0.190 Sum_probs=61.5
Q ss_pred CCCCCccccccccHHHHHHHHhcc-----------CCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCc
Q 003086 157 VYDHTLVVGLEGDTRKIKDWLFEA-----------EEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQT 225 (849)
Q Consensus 157 ~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 225 (849)
...-.++.|.++.+++|.+.+.-+ -...+-|.++|++|.|||.+|+.+++.. . .-++.++..
T Consensus 473 ~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~--~-----~~f~~v~~~ 545 (806)
T 3cf2_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC--Q-----ANFISIKGP 545 (806)
T ss_dssp CCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT--T-----CEEEECCHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh--C-----CceEEeccc
Confidence 334456778888888877665432 0123457899999999999999998842 2 223444311
Q ss_pred cCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCc
Q 003086 226 FTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRYLIVMDDVWG 273 (849)
Q Consensus 226 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~ 273 (849)
.+.....+.+...+.+.+...-...+++|+||+++.
T Consensus 546 ------------~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 546 ------------ELLTMWFGESEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp ------------HHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred ------------hhhccccchHHHHHHHHHHHHHHcCCceeechhhhH
Confidence 122222344555555545444456789999999864
No 277
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.81 E-value=0.055 Score=57.15 Aligned_cols=90 Identities=20% Similarity=0.240 Sum_probs=53.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcChhhhccc----CceEEEEeCCccCHHHHHHHHHHHhcCCC----------CCC--
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFNDREIENWF----ERRMWVSVSQTFTEEQIMRSMLRNLGDAS----------AGD-- 246 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f----~~~~wv~~s~~~~~~~~~~~i~~~l~~~~----------~~~-- 246 (849)
.-.++.|+|++|+|||||+..++......... ..++|++....+....+ ..+++..+... ...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 35799999999999999999987632111111 23589887766544443 33444433211 011
Q ss_pred -CHHHHHHHHHHHhc------CccEEEEEcCCCc
Q 003086 247 -DRGELLRKINQYLL------GKRYLIVMDDVWG 273 (849)
Q Consensus 247 -~~~~~~~~l~~~l~------~~~~LlVlDdv~~ 273 (849)
...++...+...+. .+.-+||+|.+-.
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 12233444444443 4677999999854
No 278
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.79 E-value=0.027 Score=57.78 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=22.9
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 181 EEGILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 181 ~~~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.....+|+|+|..|+||||||+.+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999999998876
No 279
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.77 E-value=0.014 Score=62.29 Aligned_cols=45 Identities=27% Similarity=0.383 Sum_probs=34.8
Q ss_pred ccccccccHHHHHHHHhc-------------cCCCeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 162 LVVGLEGDTRKIKDWLFE-------------AEEGILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~-------------~~~~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.++|.+..++.+...+.. .......|.++|++|+|||++|+.+++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 368888888888877731 111345789999999999999999987
No 280
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=94.76 E-value=0.28 Score=64.81 Aligned_cols=137 Identities=15% Similarity=0.130 Sum_probs=75.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHhcCc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASA--GDDRGELLRKINQYLLGK 262 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~l~~~l~~~ 262 (849)
+-|.++|++|+|||++|+.+.... ..+ ..+.++++...+...+.+.+-..+..... +.-.. -.-.++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~-------P~~~gk 1336 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLL-------PKSDIK 1336 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEE-------EBSSSS
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCcccc-------CCCCCc
Confidence 467899999999999997776531 112 34567777777777666665554432110 00000 000367
Q ss_pred cEEEEEcCCCccCH------HHHHHHHhcCCCC-----C--------CceEEEEecchh------hhhhccccccccccC
Q 003086 263 RYLIVMDDVWGEDL------AWWRRIYEGLPKG-----K--------GSSIIITTRNGK------VSQKMGVKKARMHFP 317 (849)
Q Consensus 263 ~~LlVlDdv~~~~~------~~~~~l~~~l~~~-----~--------~s~ilvTtr~~~------v~~~~~~~~~~~~~l 317 (849)
+.++++||+.-... ...+.++..+..+ . +..+|-|+.... +...... ....+.+
T Consensus 1337 ~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR-rf~vi~i 1415 (2695)
T 4akg_A 1337 NLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR-HAAILYL 1415 (2695)
T ss_dssp CEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT-TEEEEEC
T ss_pred eEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh-eeeEEEe
Confidence 89999999643211 2344444443221 1 123344443321 1111111 1156778
Q ss_pred CCCChhhHHHHHHHHh
Q 003086 318 KFLSEDDSWLLFRKIA 333 (849)
Q Consensus 318 ~~L~~~e~~~lf~~~~ 333 (849)
...+.++-..+|....
T Consensus 1416 ~~P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1416 GYPSGKSLSQIYEIYY 1431 (2695)
T ss_dssp CCCTTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 8888888888888775
No 281
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.74 E-value=0.025 Score=59.82 Aligned_cols=113 Identities=13% Similarity=0.097 Sum_probs=62.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCcc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKR 263 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 263 (849)
..+++|+|+.|.|||||.+.+... +.......+ +++.+..... .......+.............+.+...|...+
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i-~t~ed~~e~~--~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~P 197 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHI-LTIEDPIEFV--HESKKCLVNQREVHRDTLGFSEALRSALREDP 197 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEE-EEEESSCCSC--CCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEE-EEccCcHHhh--hhccccceeeeeeccccCCHHHHHHHHhhhCc
Confidence 359999999999999999998762 222212222 2222211100 00000000000001112234457788888888
Q ss_pred EEEEEcCCCccCHHHHHHHHhcCCCCCCceEEEEecchhhhh
Q 003086 264 YLIVMDDVWGEDLAWWRRIYEGLPKGKGSSIIITTRNGKVSQ 305 (849)
Q Consensus 264 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~s~ilvTtr~~~v~~ 305 (849)
=+|++|+.-+ .+.++.+.... ..|..|++||...+.+.
T Consensus 198 dvillDEp~d--~e~~~~~~~~~--~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 198 DIILVGEMRD--LETIRLALTAA--ETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp SEEEESCCCS--HHHHHHHHHHH--HTTCEEEEEESCSSHHH
T ss_pred CEEecCCCCC--HHHHHHHHHHH--hcCCEEEEEEccChHHH
Confidence 8999999986 66666655442 22666888887755543
No 282
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.59 E-value=0.016 Score=54.60 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+|.|+|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 283
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.56 E-value=0.1 Score=53.74 Aligned_cols=87 Identities=20% Similarity=0.275 Sum_probs=48.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHH--HHHHHHHHHhcCCC----CCCCHHHH-HHHHH
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEE--QIMRSMLRNLGDAS----AGDDRGEL-LRKIN 256 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~--~~~~~i~~~l~~~~----~~~~~~~~-~~~l~ 256 (849)
..+|+|+|.+|+||||++..++.. ....-..+.++... .+... +-+...++.++.+. .+.+...+ ...+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~--l~~~g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHH--HHhcCCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 579999999999999999999763 22222234555443 22222 22333444444321 12233222 33455
Q ss_pred HHhcCccEEEEEcCCCc
Q 003086 257 QYLLGKRYLIVMDDVWG 273 (849)
Q Consensus 257 ~~l~~~~~LlVlDdv~~ 273 (849)
..+....-++|+|-.-.
T Consensus 181 ~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 181 HALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHTTCSEEEEEECCC
T ss_pred HHHhcCCCEEEEECCCc
Confidence 54555555888897643
No 284
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.55 E-value=0.07 Score=54.81 Aligned_cols=85 Identities=14% Similarity=0.146 Sum_probs=45.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCC-ccCHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhcC
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQ-TFTEEQIMRSMLRNLGDASA-GDDRGELLRKINQYLLG 261 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~l~~~l~~ 261 (849)
..+++|+|.+|+||||++..+....... .=..+..+.... .....+.+....+..+.+.. ..+...+...+.. + .
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~-~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~-~ 181 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLE-KHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F-S 181 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G-G
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h-c
Confidence 4689999999999999999987632111 112355555432 22233334444433333321 2233444444443 3 3
Q ss_pred ccEEEEEcCC
Q 003086 262 KRYLIVMDDV 271 (849)
Q Consensus 262 ~~~LlVlDdv 271 (849)
..=++|+|-.
T Consensus 182 ~~dlvIiDT~ 191 (296)
T 2px0_A 182 EYDHVFVDTA 191 (296)
T ss_dssp GSSEEEEECC
T ss_pred CCCEEEEeCC
Confidence 4458889954
No 285
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.52 E-value=0.019 Score=54.23 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999876
No 286
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.50 E-value=0.018 Score=53.98 Aligned_cols=22 Identities=27% Similarity=0.123 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+|+|.|++|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999876
No 287
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.50 E-value=0.16 Score=54.91 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
...+|.++|.+|+||||++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 368999999999999999988875
No 288
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.50 E-value=0.021 Score=54.54 Aligned_cols=24 Identities=33% Similarity=0.278 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
..+++|+|++|.|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999773
No 289
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=94.45 E-value=0.12 Score=55.56 Aligned_cols=132 Identities=12% Similarity=0.085 Sum_probs=67.9
Q ss_pred ccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcC
Q 003086 162 LVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGD 241 (849)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 241 (849)
.++|....++++.+.+..-......|.|.|.+|+|||++|+.+..... ..-...+-++++.- ....+-.++...-.+
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~--r~~~~fv~v~~~~~-~~~~~~~elfg~~~g 214 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSD--RSKEPFVALNVASI-PRDIFEAELFGYEKG 214 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHST--TTTSCEEEEETTTS-CHHHHHHHHHCBCTT
T ss_pred hhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcC--CCCCCeEEEecCCC-CHHHHHHHhcCCCCC
Confidence 466777777777776654322223358999999999999999876311 11112234444432 222222222211111
Q ss_pred CCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCC------------CCceEEEEecc
Q 003086 242 ASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKG------------KGSSIIITTRN 300 (849)
Q Consensus 242 ~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~------------~~s~ilvTtr~ 300 (849)
...+.... ....+ +.- ..=.|+||++..........+...+..+ ...+||.||..
T Consensus 215 ~~tga~~~-~~g~~-~~a--~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~ 281 (387)
T 1ny5_A 215 AFTGAVSS-KEGFF-ELA--DGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNR 281 (387)
T ss_dssp SSTTCCSC-BCCHH-HHT--TTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESS
T ss_pred CCCCcccc-cCCce-eeC--CCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCC
Confidence 11111000 00001 111 1237889999887777777777665431 13467777754
No 290
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.41 E-value=0.13 Score=53.67 Aligned_cols=53 Identities=15% Similarity=0.036 Sum_probs=38.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLG 240 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 240 (849)
-.++.|.|.+|+||||+|..++.+... .=..++|++. ..+..++...++....
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDLT 98 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHhh
Confidence 358899999999999999998774222 2234667665 4567788888876543
No 291
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.34 E-value=0.031 Score=58.59 Aligned_cols=96 Identities=16% Similarity=0.120 Sum_probs=51.3
Q ss_pred HHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhc-ccCc-eEEEEeCCccCHHHHHHHHHHHhcCC----CCC
Q 003086 172 KIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIEN-WFER-RMWVSVSQTFTEEQIMRSMLRNLGDA----SAG 245 (849)
Q Consensus 172 ~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~f~~-~~wv~~s~~~~~~~~~~~i~~~l~~~----~~~ 245 (849)
++++.+..-.. -..++|+|.+|+|||||++.+.+. +.. +-+. ++++-+.+.. +++ .++.+.+... ...
T Consensus 163 raID~~~pi~r-GQr~~IvG~sG~GKTtLl~~Iar~--i~~~~~~v~~I~~lIGER~--~Ev-~~~~~~~~~~vV~atad 236 (422)
T 3ice_A 163 RVLDLASPIGR-GQRGLIVAPPKAGKTMLLQNIAQS--IAYNHPDCVLMVLLIDERP--EEV-TEMQRLVKGEVVASTFD 236 (422)
T ss_dssp HHHHHHSCCBT-TCEEEEECCSSSSHHHHHHHHHHH--HHHHCTTSEEEEEEESSCH--HHH-HHHHTTCSSEEEEECTT
T ss_pred eeeeeeeeecC-CcEEEEecCCCCChhHHHHHHHHH--HhhcCCCeeEEEEEecCCh--HHH-HHHHHHhCeEEEEeCCC
Confidence 45566554322 347899999999999999998763 222 2232 3456666543 111 2233333111 111
Q ss_pred CCHHHH------HHHHHHHh--cCccEEEEEcCCCc
Q 003086 246 DDRGEL------LRKINQYL--LGKRYLIVMDDVWG 273 (849)
Q Consensus 246 ~~~~~~------~~~l~~~l--~~~~~LlVlDdv~~ 273 (849)
+..... .-.+.+++ +++.+||++||+..
T Consensus 237 ep~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR 272 (422)
T 3ice_A 237 EPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITR 272 (422)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchH
Confidence 111111 11122233 58999999999854
No 292
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=94.30 E-value=0.035 Score=59.21 Aligned_cols=119 Identities=13% Similarity=0.107 Sum_probs=62.4
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHH-HHHHHh
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMR-SMLRNL 239 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~-~i~~~l 239 (849)
..++|....+.++.+.+..-......|.|.|.+|+||+++|+.+.... ..-...+-|+++.-. .+.+. ++...-
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s---~r~~~fv~vnc~~~~--~~~~~~~lfg~~ 203 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYS---GRKGAFVDLNCASIP--QELAESELFGHE 203 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHH---CCCSCEEEEESSSSC--TTTHHHHHHEEC
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhc---cccCCcEEEEcccCC--hHHHHHHhcCcc
Confidence 357788777777766654422222346799999999999999987632 111222334444321 12222 221111
Q ss_pred cCCCCCCCHHHHHHHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCC
Q 003086 240 GDASAGDDRGELLRKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPK 288 (849)
Q Consensus 240 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~ 288 (849)
.+...+.... ....+ +.- ..-.|+||++.+........+...+..
T Consensus 204 ~g~~tga~~~-~~g~~-~~a--~~gtlfldei~~l~~~~Q~~Ll~~l~~ 248 (368)
T 3dzd_A 204 KGAFTGALTR-KKGKL-ELA--DQGTLFLDEVGELDQRVQAKLLRVLET 248 (368)
T ss_dssp SCSSSSCCCC-EECHH-HHT--TTSEEEEETGGGSCHHHHHHHHHHHHH
T ss_pred ccccCCcccc-cCChH-hhc--CCCeEEecChhhCCHHHHHHHHHHHHh
Confidence 1111111000 00001 111 123699999998778888888776643
No 293
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.30 E-value=0.1 Score=56.53 Aligned_cols=99 Identities=18% Similarity=0.279 Sum_probs=54.6
Q ss_pred HHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCcc-CHHHHHHHHHHHhcC-------CCC
Q 003086 173 IKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTF-TEEQIMRSMLRNLGD-------ASA 244 (849)
Q Consensus 173 l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~-------~~~ 244 (849)
.++.|..-..+ ..++|+|.+|+|||||++.+...... .+-+..+++.+.+.. ...++..++...=.. ...
T Consensus 141 ~ID~L~pi~kG-q~~~i~G~sGvGKTtL~~~l~~~~~~-~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~ 218 (473)
T 1sky_E 141 VVDLLAPYIKG-GKIGLFGGAGVGKTVLIQELIHNIAQ-EHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQM 218 (473)
T ss_dssp HHHHHSCEETT-CEEEEECCSSSCHHHHHHHHHHHHHH-HTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECT
T ss_pred HHHHHhhhccC-CEEEEECCCCCCccHHHHHHHhhhhh-ccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcC
Confidence 45666542222 25789999999999999999874221 222445667666543 344555545432000 001
Q ss_pred CCCHHHH------HHHHHHHh---cCccEEEEEcCCCc
Q 003086 245 GDDRGEL------LRKINQYL---LGKRYLIVMDDVWG 273 (849)
Q Consensus 245 ~~~~~~~------~~~l~~~l---~~~~~LlVlDdv~~ 273 (849)
.++.... .-.+.+++ +++++||++||+..
T Consensus 219 ~d~pg~r~~~~~~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 219 NEPPGARMRVALTGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 1111111 11233333 58899999999954
No 294
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.28 E-value=0.22 Score=51.02 Aligned_cols=88 Identities=19% Similarity=0.129 Sum_probs=49.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCcc-CHHHHHHHHHHHhcCCC----CCCCHHHHHHHHHHH
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTF-TEEQIMRSMLRNLGDAS----AGDDRGELLRKINQY 258 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~----~~~~~~~~~~~l~~~ 258 (849)
..+++++|.+|+||||++..+... ....-..+.++...... ...+.+.......+.+. .+.+..++.....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 578999999999999999998763 22222345566554221 22233334444444321 123444444333444
Q ss_pred hc-CccEEEEEcCCCc
Q 003086 259 LL-GKRYLIVMDDVWG 273 (849)
Q Consensus 259 l~-~~~~LlVlDdv~~ 273 (849)
+. ...=++|+|-.-.
T Consensus 176 ~~~~~~D~ViIDTpg~ 191 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAGR 191 (297)
T ss_dssp HHHTTCSEEEEECCCS
T ss_pred HHhCCCCEEEEeCCCC
Confidence 43 3334888887644
No 295
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.24 E-value=0.15 Score=50.74 Aligned_cols=48 Identities=21% Similarity=0.221 Sum_probs=31.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHH
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSM 235 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 235 (849)
-.++.|.|.+|+||||||..++.. ....=..++|++.... ..++...+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~~--~~~~~~~~ 70 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEEH--PVQVRQNM 70 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSSC--HHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccCC--HHHHHHHH
Confidence 358999999999999999887653 2222245778776543 44444433
No 296
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.17 E-value=0.02 Score=54.19 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
|.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999865
No 297
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.16 E-value=0.023 Score=54.81 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..+|+|+|++|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999976
No 298
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.13 E-value=0.023 Score=53.78 Aligned_cols=22 Identities=18% Similarity=0.471 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+++|+|+.|+|||||++.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999876
No 299
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.06 E-value=0.022 Score=53.34 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+|+|+|++|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 300
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.04 E-value=0.023 Score=54.01 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+.|.|+|++|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999876
No 301
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.98 E-value=0.033 Score=53.71 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..+|+|+|++|.||||+|+.+..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999977
No 302
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.97 E-value=0.28 Score=51.05 Aligned_cols=24 Identities=42% Similarity=0.462 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
...+++|+|+.|+||||+++.+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999876
No 303
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.96 E-value=0.092 Score=66.89 Aligned_cols=83 Identities=19% Similarity=0.169 Sum_probs=57.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCC------CCCCHHHHHHHHH
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDAS------AGDDRGELLRKIN 256 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~ 256 (849)
..+.|.|+|++|+|||+||.++... ...+=..++|+++.+.++... ++.++.+. ..++.++..+.++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 3568999999999999999998773 222334578898888877665 44555332 1335556666666
Q ss_pred HHh-cCccEEEEEcCCC
Q 003086 257 QYL-LGKRYLIVMDDVW 272 (849)
Q Consensus 257 ~~l-~~~~~LlVlDdv~ 272 (849)
... ..+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 554 3567799999994
No 304
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.96 E-value=0.13 Score=55.52 Aligned_cols=87 Identities=20% Similarity=0.153 Sum_probs=45.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCH--HHHHHHHHHHhcCCCC----CCCHHHHHHHHH
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTE--EQIMRSMLRNLGDASA----GDDRGELLRKIN 256 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~----~~~~~~~~~~l~ 256 (849)
...+|.++|.+|+||||++..+... ....=..+..+++. .+.+ .+-+.......+.+.. ..+...+.....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~--l~~~G~kVllv~~D-~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al 172 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF--YKKRGYKVGLVAAD-VYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGV 172 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH--HHHTTCCEEEEEEC-CSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEecC-ccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHH
Confidence 4689999999999999999998763 22222234444443 2222 2333334444443221 223333332222
Q ss_pred HHhc-CccEEEEEcCCC
Q 003086 257 QYLL-GKRYLIVMDDVW 272 (849)
Q Consensus 257 ~~l~-~~~~LlVlDdv~ 272 (849)
+.+. ...=++|+|-..
T Consensus 173 ~~a~~~~~DvvIIDTaG 189 (433)
T 3kl4_A 173 DIFVKNKMDIIIVDTAG 189 (433)
T ss_dssp HHTTTTTCSEEEEEECC
T ss_pred HHHHhcCCCEEEEECCC
Confidence 2332 333466788664
No 305
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.94 E-value=0.21 Score=56.43 Aligned_cols=104 Identities=16% Similarity=0.156 Sum_probs=56.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH-HHh----
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKIN-QYL---- 259 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~-~~l---- 259 (849)
+++.|.|.+|+||||++..+... .... ...+.+...... ....+.+.++... .+...+..... .+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~--l~~~-g~~Vl~~ApT~~----Aa~~L~e~~~~~a--~Tih~ll~~~~~~~~~~~~ 275 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADL--AESL-GLEVGLCAPTGK----AARRLGEVTGRTA--STVHRLLGYGPQGFRHNHL 275 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH--HHHT-TCCEEEEESSHH----HHHHHHHHHTSCE--EEHHHHTTEETTEESCSSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH--HHhc-CCeEEEecCcHH----HHHHhHhhhcccH--HHHHHHHcCCcchhhhhhc
Confidence 57889999999999999998763 2221 234444443221 2222222222111 01111100000 000
Q ss_pred -cCccEEEEEcCCCccCHHHHHHHHhcCCCCCCceEEEEec
Q 003086 260 -LGKRYLIVMDDVWGEDLAWWRRIYEGLPKGKGSSIIITTR 299 (849)
Q Consensus 260 -~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~s~ilvTtr 299 (849)
..+.-+||+|++...+...+..+...++ .+.++|+.-=
T Consensus 276 ~~~~~dvlIIDEasml~~~~~~~Ll~~~~--~~~~lilvGD 314 (574)
T 3e1s_A 276 EPAPYDLLIVDEVSMMGDALMLSLLAAVP--PGARVLLVGD 314 (574)
T ss_dssp SCCSCSEEEECCGGGCCHHHHHHHHTTSC--TTCEEEEEEC
T ss_pred ccccCCEEEEcCccCCCHHHHHHHHHhCc--CCCEEEEEec
Confidence 0022499999998877788888887776 4667777653
No 306
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.91 E-value=0.038 Score=51.86 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..+|+|+|++|.||||+++.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 307
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.89 E-value=0.028 Score=53.63 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999977
No 308
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.89 E-value=0.031 Score=53.39 Aligned_cols=23 Identities=35% Similarity=0.317 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 309
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.86 E-value=0.25 Score=53.24 Aligned_cols=23 Identities=39% Similarity=0.300 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..+|+|+|.+|+||||++..+..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 310
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.80 E-value=0.046 Score=56.95 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=30.0
Q ss_pred cccccHHHHHHHHhcc--CCCeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 165 GLEGDTRKIKDWLFEA--EEGILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 165 Gr~~~~~~l~~~L~~~--~~~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
+.+.-.+++++.+... ......|.|+|++|+||||+++.++.
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 3344456666665431 23456789999999999999999876
No 311
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.74 E-value=0.035 Score=57.54 Aligned_cols=40 Identities=23% Similarity=0.358 Sum_probs=27.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCC
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQ 224 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 224 (849)
+.+||+|.|-|||||||.|..+..- ....=..+.-|.+..
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~a--LA~~GkkVllID~Dp 86 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDP 86 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESS
T ss_pred CceEEEEECCCccCHHHHHHHHHHH--HHHCCCeEEEEecCC
Confidence 5789999999999999999877552 222222355666553
No 312
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.73 E-value=0.051 Score=55.65 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
...+|.|.|++|+||||+|+.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999875
No 313
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.71 E-value=0.037 Score=52.75 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+++|+|+.|.|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999964
No 314
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.70 E-value=0.045 Score=54.59 Aligned_cols=36 Identities=17% Similarity=0.044 Sum_probs=25.8
Q ss_pred HHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 171 RKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 171 ~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.++.............|+|.|++|+||||+|+.+.+
T Consensus 16 ~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 16 NELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp HHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 333333333333467899999999999999999875
No 315
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.68 E-value=0.035 Score=52.28 Aligned_cols=68 Identities=9% Similarity=0.019 Sum_probs=37.1
Q ss_pred hcCccEEEEEcCC--Cc-cCHHHHHHHHhcCCCCCCceEEEEec---chhhhhhcccc-ccccccCCCCChhhHHH
Q 003086 259 LLGKRYLIVMDDV--WG-EDLAWWRRIYEGLPKGKGSSIIITTR---NGKVSQKMGVK-KARMHFPKFLSEDDSWL 327 (849)
Q Consensus 259 l~~~~~LlVlDdv--~~-~~~~~~~~l~~~l~~~~~s~ilvTtr---~~~v~~~~~~~-~~~~~~l~~L~~~e~~~ 327 (849)
+..++-+++||++ -+ .+....+.+...+.. .+..+|++|. +......+... ....+++...+.++..+
T Consensus 96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~-~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~ 170 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD-PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILE 170 (178)
T ss_dssp HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC-TTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHH
T ss_pred cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc-CCCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHH
Confidence 6667779999994 22 345555566666654 3454777773 33333332221 12466666655554443
No 316
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.64 E-value=0.027 Score=54.38 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..+|+|.|++|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999876
No 317
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.60 E-value=0.036 Score=53.42 Aligned_cols=23 Identities=43% Similarity=0.564 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..+|+|+|+.|.|||||++.+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 318
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.60 E-value=0.034 Score=53.05 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 319
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.59 E-value=0.34 Score=47.82 Aligned_cols=99 Identities=18% Similarity=0.239 Sum_probs=53.1
Q ss_pred HHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhh-hcccC-ceEEEEeCCccCHHHHHHHHHHHhcCCCC---
Q 003086 170 TRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREI-ENWFE-RRMWVSVSQTFTEEQIMRSMLRNLGDASA--- 244 (849)
Q Consensus 170 ~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~--- 244 (849)
.++++..+..+ +.+.|+|..|.||||+...+.-+... ..... ..+.+..........+...+...++....
T Consensus 66 q~~~i~~i~~g----~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~ 141 (235)
T 3llm_A 66 ESEILEAISQN----SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSC 141 (235)
T ss_dssp HHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSE
T ss_pred HHHHHHHHhcC----CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceE
Confidence 44556666554 37899999999999877655432111 11111 23333333333334455555554443210
Q ss_pred ------------C------CCHHHHHHHHHHHhcCccEEEEEcCCCc
Q 003086 245 ------------G------DDRGELLRKINQYLLGKRYLIVMDDVWG 273 (849)
Q Consensus 245 ------------~------~~~~~~~~~l~~~l~~~~~LlVlDdv~~ 273 (849)
. .+.+.+...+...+.+ --+||+|+++.
T Consensus 142 g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~-~~~lVlDEah~ 187 (235)
T 3llm_A 142 GYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRG-ISHVIVDEIHE 187 (235)
T ss_dssp EEEETTEEECCCSSSEEEEEEHHHHHHHHHHCCTT-CCEEEECCTTS
T ss_pred EEeechhhccCCCCCeEEEECHHHHHHHHHhhhcC-CcEEEEECCcc
Confidence 0 1445555555543333 34899999986
No 320
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.57 E-value=0.036 Score=53.53 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999875
No 321
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.57 E-value=0.036 Score=53.81 Aligned_cols=24 Identities=42% Similarity=0.607 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
..+|+|+|+.|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999999763
No 322
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.49 E-value=0.028 Score=53.06 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.++|.|+|++|+||||+|+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 35788999999999999999875
No 323
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.46 E-value=0.038 Score=55.52 Aligned_cols=22 Identities=27% Similarity=0.237 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+|.|+|++|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999876
No 324
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.44 E-value=0.052 Score=53.36 Aligned_cols=37 Identities=27% Similarity=0.435 Sum_probs=27.2
Q ss_pred cHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcC
Q 003086 169 DTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 169 ~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
..+.+.+.+... ....|+|+|.+|+|||||+..+...
T Consensus 25 ~a~~~r~~~~~~--~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 25 LADKNRKLLNKH--GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHHT--TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 344444444332 4688999999999999999998763
No 325
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.42 E-value=0.04 Score=52.64 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..+|+|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998865
No 326
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.40 E-value=0.3 Score=52.95 Aligned_cols=39 Identities=23% Similarity=0.196 Sum_probs=27.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcChhhhcc-cCceEEEEeC
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFNDREIENW-FERRMWVSVS 223 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-f~~~~wv~~s 223 (849)
..++|.|+|.+|+||||++..+... .... =..+.-|++.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~--l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKF--LREKHKKKVLVVSAD 138 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHH--HHHTSCCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHhcCCeEEEEecC
Confidence 4689999999999999999998763 3222 2234555554
No 327
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.40 E-value=0.06 Score=55.78 Aligned_cols=43 Identities=16% Similarity=0.181 Sum_probs=30.1
Q ss_pred ccccccHHHHHHHHhcc--CCCeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 164 VGLEGDTRKIKDWLFEA--EEGILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 164 vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
+|-...+..+...+... .....+|+|.|..|+||||||+.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34444455554444433 34567999999999999999999865
No 328
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.40 E-value=0.047 Score=52.87 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..+|+|+|++|.||||+|+.+..
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999876
No 329
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.37 E-value=0.34 Score=53.00 Aligned_cols=66 Identities=11% Similarity=0.021 Sum_probs=42.3
Q ss_pred HHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHh
Q 003086 170 TRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNL 239 (849)
Q Consensus 170 ~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 239 (849)
...+-+.+ .+=....++.|.|.+|+||||+|..++.+.... .=..++|++.. .+..++...++...
T Consensus 187 ~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 187 FKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCSE 252 (444)
T ss_dssp CHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred CHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHHH
Confidence 33444444 332234588999999999999999987742221 12357777665 45677887776544
No 330
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.37 E-value=0.038 Score=53.31 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003086 186 AIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999876
No 331
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.35 E-value=0.032 Score=54.00 Aligned_cols=24 Identities=38% Similarity=0.571 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
...+|+|+|++|+|||||++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999876
No 332
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.32 E-value=0.047 Score=52.83 Aligned_cols=22 Identities=41% Similarity=0.511 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+|+|+|+.|.||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 333
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.29 E-value=0.032 Score=53.06 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999976
No 334
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.27 E-value=0.042 Score=51.20 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..+|+|.|++|+||||+|+.+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 335
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.27 E-value=0.047 Score=53.04 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..+|+|+|+.|.|||||++.+..
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 336
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.24 E-value=0.047 Score=53.06 Aligned_cols=24 Identities=33% Similarity=0.326 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..++|.|.|++|+||||.|+.+.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999876
No 337
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.22 E-value=0.043 Score=52.07 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
...|+|+|++|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999876
No 338
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.21 E-value=0.049 Score=52.51 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
...+|+|.|++|+||||+|+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999875
No 339
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.19 E-value=0.046 Score=55.17 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 340
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.19 E-value=0.04 Score=53.19 Aligned_cols=21 Identities=43% Similarity=0.559 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003086 186 AIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~ 206 (849)
+|+|+|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999865
No 341
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.17 E-value=0.44 Score=52.31 Aligned_cols=51 Identities=22% Similarity=0.158 Sum_probs=35.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHH
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLR 237 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 237 (849)
-.++.|.|.+|+||||||..++.+.... .-..++|++... +...+...++.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~~ 253 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRMLC 253 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHHH
Confidence 4589999999999999999988742221 112577776553 45677776653
No 342
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.16 E-value=0.049 Score=52.48 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
...+|+|+|+.|+||||+|+.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999876
No 343
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.14 E-value=0.041 Score=51.65 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003086 186 AIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.|.|.|++|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999876
No 344
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.13 E-value=0.052 Score=51.48 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
...|+|.|++|+||||+|+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 345
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.11 E-value=0.016 Score=55.12 Aligned_cols=10 Identities=10% Similarity=0.026 Sum_probs=5.0
Q ss_pred CCCceEEEee
Q 003086 762 PMLRYLSVCS 771 (849)
Q Consensus 762 ~~L~~L~L~~ 771 (849)
+.|+.|+++.
T Consensus 157 ~tL~~L~l~~ 166 (197)
T 1pgv_A 157 ESLLRVGISF 166 (197)
T ss_dssp SSCCEEECCC
T ss_pred CCcCeEeccC
Confidence 4455555543
No 346
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.11 E-value=0.048 Score=52.74 Aligned_cols=22 Identities=36% Similarity=0.700 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+|+|+|+.|+||||+++.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 347
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.10 E-value=0.58 Score=51.61 Aligned_cols=24 Identities=38% Similarity=0.379 Sum_probs=20.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..++|+|+|.+|+||||++..+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999875
No 348
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.10 E-value=0.049 Score=54.69 Aligned_cols=37 Identities=27% Similarity=0.195 Sum_probs=26.9
Q ss_pred HHHHHHHHhcc---CCCeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 170 TRKIKDWLFEA---EEGILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 170 ~~~l~~~L~~~---~~~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.++++..+..+ .....+|.|+|++|.||||+|+.+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 15 LARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34444444432 23467899999999999999999876
No 349
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.09 E-value=0.044 Score=53.96 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+|+|+|++|.||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 350
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.08 E-value=0.052 Score=51.55 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
...+|.|+|++|+||||+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999977
No 351
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.07 E-value=0.04 Score=52.73 Aligned_cols=23 Identities=39% Similarity=0.375 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999875
No 352
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.05 E-value=0.058 Score=52.80 Aligned_cols=41 Identities=24% Similarity=0.362 Sum_probs=29.6
Q ss_pred cccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcC
Q 003086 165 GLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 165 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
+.++..+.+...+... ..++|+|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3344455555554433 4789999999999999999998763
No 353
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.04 E-value=0.05 Score=54.59 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
...+|+|.|++|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999866
No 354
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.02 E-value=0.038 Score=53.19 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999865
No 355
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.02 E-value=0.079 Score=56.21 Aligned_cols=37 Identities=19% Similarity=0.327 Sum_probs=28.9
Q ss_pred HHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 170 TRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 170 ~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
...+.+.+.....+..+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4455555654445678999999999999999998865
No 356
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.01 E-value=0.052 Score=52.68 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..|+|.|++|+||||+|+.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999999976
No 357
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.97 E-value=0.051 Score=51.86 Aligned_cols=23 Identities=17% Similarity=0.498 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.++|+|+|+.|+|||||++.+..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999999875
No 358
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.93 E-value=0.06 Score=51.21 Aligned_cols=36 Identities=14% Similarity=0.157 Sum_probs=26.1
Q ss_pred HHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 170 TRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 170 ~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
+..+..++.. -+....+.|+|++|+||||+|..+++
T Consensus 45 ~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 45 LGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHH
Confidence 4455555543 22234689999999999999988877
No 359
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.83 E-value=0.053 Score=54.17 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..+|+|+|++|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
No 360
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.81 E-value=0.054 Score=51.61 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..+|+|.|++|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 361
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.79 E-value=0.052 Score=52.27 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..+|.|+|++|+||||+|+.+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999876
No 362
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.78 E-value=0.057 Score=58.45 Aligned_cols=46 Identities=26% Similarity=0.323 Sum_probs=34.7
Q ss_pred CccccccccHHHHHHHHhcc------------CCCeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 161 TLVVGLEGDTRKIKDWLFEA------------EEGILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..++|.++.++.+...+..+ ....+-|.++|++|+||||+|+.+..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 35788888888886665321 11245688999999999999999977
No 363
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.77 E-value=0.054 Score=50.32 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003086 186 AIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999876
No 364
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.74 E-value=0.27 Score=53.35 Aligned_cols=100 Identities=16% Similarity=0.215 Sum_probs=61.3
Q ss_pred HHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCcc-CHHHHHHHHHHHhcCC-------C
Q 003086 172 KIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTF-TEEQIMRSMLRNLGDA-------S 243 (849)
Q Consensus 172 ~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~ 243 (849)
++++.|..-.. -.-++|.|.+|+|||+|+..+.+.. .+.+-+.++++-+.+.. .+.++.+++...=... .
T Consensus 154 rvID~l~pigk-Gqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~r 231 (498)
T 1fx0_B 154 KVVNLLAPYRR-GGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESK 231 (498)
T ss_dssp TTHHHHSCCCT-TCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCC
T ss_pred eEeeeeccccc-CCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccc
Confidence 34666654321 2357999999999999999987731 22345678888887654 5667777776541111 1
Q ss_pred C-------CCC------HHHHHHHHHHHh---cCccEEEEEcCCCc
Q 003086 244 A-------GDD------RGELLRKINQYL---LGKRYLIVMDDVWG 273 (849)
Q Consensus 244 ~-------~~~------~~~~~~~l~~~l---~~~~~LlVlDdv~~ 273 (849)
. .+. .....-.+.+++ +++.+||++||+-.
T Consensus 232 tvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 232 VALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp EEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 0 111 112223344555 36899999999844
No 365
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.72 E-value=0.35 Score=52.24 Aligned_cols=100 Identities=18% Similarity=0.280 Sum_probs=59.8
Q ss_pred HHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCcc-CHHHHHHHHHHHhcCC------C-
Q 003086 172 KIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTF-TEEQIMRSMLRNLGDA------S- 243 (849)
Q Consensus 172 ~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~------~- 243 (849)
++++.|..-.. -..++|.|.+|+|||+|+..+.+.. .+.+-+.++++-+.+.. .+.++.+++...=... .
T Consensus 142 r~ID~l~pigk-GQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rt 219 (482)
T 2ck3_D 142 KVVDLLAPYAK-GGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKV 219 (482)
T ss_dssp HHHHHHSCEET-TCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCE
T ss_pred EEEeccccccc-CCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceE
Confidence 55666654321 2357999999999999999987731 12334567777777653 4566777776542211 1
Q ss_pred ------CCCCHH------HHHHHHHHHh---cCccEEEEEcCCCc
Q 003086 244 ------AGDDRG------ELLRKINQYL---LGKRYLIVMDDVWG 273 (849)
Q Consensus 244 ------~~~~~~------~~~~~l~~~l---~~~~~LlVlDdv~~ 273 (849)
..+... ...-.+.+++ +++.+||++||+-.
T Consensus 220 vvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 220 ALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 011111 1111233333 47899999999843
No 366
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.72 E-value=0.051 Score=51.44 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003086 186 AIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~ 206 (849)
+|.|+|++|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 367
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.72 E-value=0.052 Score=52.08 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+|+|.|++|+||||+|+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 368
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.70 E-value=0.057 Score=50.04 Aligned_cols=23 Identities=35% Similarity=0.355 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.++++|+|..|+|||||+..+..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999887
No 369
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.68 E-value=0.047 Score=51.04 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999876
No 370
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.64 E-value=0.061 Score=52.11 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+++|+|+.|.|||||++.+..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999875
No 371
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.63 E-value=0.069 Score=55.33 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
...+|+|+|..|.|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 357999999999999999999876
No 372
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.60 E-value=0.29 Score=53.38 Aligned_cols=42 Identities=29% Similarity=0.423 Sum_probs=28.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccC
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFT 227 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 227 (849)
...+++|+|..|+|||||++.+..- .. .-...+++.....+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl--l~-~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ--FE-QQGKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH--HH-HTTCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH--hh-hcCCeEEEecCcccc
Confidence 4579999999999999999999762 22 223455554444443
No 373
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.60 E-value=0.073 Score=48.92 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
-.+++|+|+.|.|||||++.+..
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 374
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.57 E-value=0.4 Score=49.13 Aligned_cols=85 Identities=25% Similarity=0.222 Sum_probs=45.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHH--HHHHHHHHhcCCC----CCCCHHHHHH-HHH
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQ--IMRSMLRNLGDAS----AGDDRGELLR-KIN 256 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~--~~~~i~~~l~~~~----~~~~~~~~~~-~l~ 256 (849)
..+++|+|.+|+||||++..++.- ....-..+.++... ...... .+....+..+... ...+..++.. .+.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~--~~~~~~~v~l~~~d-~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY--YKGKGRRPLLVAAD-TQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH--HHHTTCCEEEEECC-SSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEecCC-cccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999999999763 22222234455443 222221 1233344443321 1223444433 333
Q ss_pred HHhcCccEEEEEcCC
Q 003086 257 QYLLGKRYLIVMDDV 271 (849)
Q Consensus 257 ~~l~~~~~LlVlDdv 271 (849)
.......=++|+|--
T Consensus 175 ~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHTCCEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 333234457888976
No 375
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.57 E-value=0.059 Score=51.43 Aligned_cols=21 Identities=43% Similarity=0.683 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003086 186 AIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~ 206 (849)
+|+|.|++|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999976
No 376
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.53 E-value=0.072 Score=50.78 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
...+|+|+|+.|.||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999865
No 377
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.51 E-value=0.15 Score=48.56 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003086 186 AIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 378
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.42 E-value=0.042 Score=51.91 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=16.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999865
No 379
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.37 E-value=0.16 Score=49.77 Aligned_cols=46 Identities=26% Similarity=0.353 Sum_probs=30.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhh---hc-ccCceEEEEeCCccCHH
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREI---EN-WFERRMWVSVSQTFTEE 229 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~-~f~~~~wv~~s~~~~~~ 229 (849)
-.+++|+|++|+|||||++.++..... .. .-...+|+.....+...
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~ 74 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE 74 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHH
Confidence 469999999999999999998652111 11 12347788765544443
No 380
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.36 E-value=0.079 Score=52.88 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..+|+|.|+.|.|||||++.+..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999865
No 381
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.33 E-value=0.2 Score=52.04 Aligned_cols=24 Identities=38% Similarity=0.452 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
...+|+|+|.+|+||||++..+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999876
No 382
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.29 E-value=0.09 Score=51.10 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999977
No 383
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.23 E-value=0.22 Score=43.93 Aligned_cols=34 Identities=26% Similarity=0.383 Sum_probs=18.3
Q ss_pred ccceEeccCCCCCcccCcc-ccCCCCCcEEeecccc
Q 003086 586 HLSYLCLSNTHPLIHLPPS-LKKLKNLQILDVSYCQ 620 (849)
Q Consensus 586 ~Lr~L~L~~~~~~~~lp~~-i~~L~~L~~L~L~~~~ 620 (849)
+|++|+|++| .+..+|.. +..+++|++|+|++|+
T Consensus 32 ~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 4556666666 55555442 3455555555555544
No 384
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.23 E-value=0.061 Score=52.59 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+++|+|+.|+|||||++.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999876
No 385
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.19 E-value=0.065 Score=52.48 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
...|.|.|++|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999876
No 386
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.19 E-value=0.33 Score=61.99 Aligned_cols=102 Identities=17% Similarity=0.112 Sum_probs=65.9
Q ss_pred cccccHHHHHHHHh-ccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCC
Q 003086 165 GLEGDTRKIKDWLF-EAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDAS 243 (849)
Q Consensus 165 Gr~~~~~~l~~~L~-~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 243 (849)
+...-...|-..|. .+=..-.++.|+|.+|+||||||..++... ...=..++|++....++... ++.++...
T Consensus 363 ~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~--a~~G~~vlyis~E~s~~~~~-----a~~lGvd~ 435 (2050)
T 3cmu_A 363 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDI 435 (2050)
T ss_dssp EECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHHH-----HHHTTCCT
T ss_pred eeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEcCCCHHHHH-----HHHcCCCH
Confidence 33333445555553 221234689999999999999999997742 22224688998888776542 55665542
Q ss_pred C------CCCHHHHHHHHHHHh-cCccEEEEEcCCCc
Q 003086 244 A------GDDRGELLRKINQYL-LGKRYLIVMDDVWG 273 (849)
Q Consensus 244 ~------~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~ 273 (849)
. +.+.+++.+.++... ....-+||+|-+..
T Consensus 436 ~~L~I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 436 DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp TTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGG
T ss_pred HHeEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHH
Confidence 2 446677777666544 34566999999854
No 387
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.18 E-value=0.073 Score=53.38 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..+|+|+|+.|.||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999975
No 388
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.11 E-value=0.072 Score=51.94 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003086 186 AIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999865
No 389
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.11 E-value=0.34 Score=50.57 Aligned_cols=105 Identities=15% Similarity=0.068 Sum_probs=55.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCccE
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGKRY 264 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 264 (849)
.+++|+|+.|.|||||++.+..- + ..-...+.+.-......... + +.+.. ..+ ........+...|..++-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~--~-~~~~g~i~i~~~~e~~~~~~-~---~~i~~-~~g-gg~~~r~~la~aL~~~p~ 242 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF--I-PKEERIISIEDTEEIVFKHH-K---NYTQL-FFG-GNITSADCLKSCLRMRPD 242 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG--S-CTTSCEEEEESSCCCCCSSC-S---SEEEE-ECB-TTBCHHHHHHHHTTSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--C-cCCCcEEEECCeeccccccc-h---hEEEE-EeC-CChhHHHHHHHHhhhCCC
Confidence 47999999999999999999762 1 11223444432211110000 0 00000 000 112334455666777788
Q ss_pred EEEEcCCCccCHHHHHHHHhcCCCCCCceEEEEecchh
Q 003086 265 LIVMDDVWGEDLAWWRRIYEGLPKGKGSSIIITTRNGK 302 (849)
Q Consensus 265 LlVlDdv~~~~~~~~~~l~~~l~~~~~s~ilvTtr~~~ 302 (849)
++++|+.-. .+.++.+... ..+ +.-+|+||....
T Consensus 243 ilildE~~~--~e~~~~l~~~-~~g-~~tvi~t~H~~~ 276 (330)
T 2pt7_A 243 RIILGELRS--SEAYDFYNVL-CSG-HKGTLTTLHAGS 276 (330)
T ss_dssp EEEECCCCS--THHHHHHHHH-HTT-CCCEEEEEECSS
T ss_pred EEEEcCCCh--HHHHHHHHHH-hcC-CCEEEEEEcccH
Confidence 999999976 4555554433 222 223677776543
No 390
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.10 E-value=0.099 Score=50.53 Aligned_cols=22 Identities=27% Similarity=0.176 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+++|+|+.|.|||||++.+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3789999999999999999875
No 391
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.09 E-value=0.067 Score=50.88 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003086 186 AIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
+++|+|+.|+|||||++.+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999998763
No 392
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.06 E-value=0.07 Score=51.77 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..+|+|.|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999976
No 393
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.02 E-value=0.071 Score=52.51 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
...|.|.|++|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 394
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.98 E-value=0.082 Score=51.60 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
-.+++|+|+.|+|||||.+.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999876
No 395
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.98 E-value=0.076 Score=51.78 Aligned_cols=21 Identities=24% Similarity=0.542 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003086 186 AIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999865
No 396
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.96 E-value=0.28 Score=61.78 Aligned_cols=83 Identities=19% Similarity=0.192 Sum_probs=58.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCC------CCCHHHHHHHHHH
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASA------GDDRGELLRKINQ 257 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~ 257 (849)
-+++.|.|.+|+||||||.++.... ...=..++|++....++.. .++.++.... .++.+++.+.++.
T Consensus 383 G~lilI~G~pGsGKTtLaLq~a~~~--~~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~~ 455 (1706)
T 3cmw_A 383 GRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 455 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHH--HHhCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHHH
Confidence 4689999999999999999987742 2233468899988877754 2555655421 3466666666665
Q ss_pred Hh-cCccEEEEEcCCCc
Q 003086 258 YL-LGKRYLIVMDDVWG 273 (849)
Q Consensus 258 ~l-~~~~~LlVlDdv~~ 273 (849)
.. ..+.-+||+|-+..
T Consensus 456 lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 456 LARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHTCCSEEEESCSTT
T ss_pred HHHhcCCCEEEECCHHH
Confidence 44 34566999999854
No 397
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.96 E-value=0.25 Score=52.56 Aligned_cols=110 Identities=14% Similarity=0.141 Sum_probs=55.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceE-EEEeCCccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRM-WVSVSQTFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGK 262 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~-wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 262 (849)
..+++|+|+.|.|||||++.+..- ........+ ++.. +... ....-...+.....+.+...+...++..+...
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~--~~~~~~g~I~~~e~--~~e~--~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~ 209 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIED--PIEY--VFKHKKSIVNQREVGEDTKSFADALRAALRED 209 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHH--HHHHSCCEEEEEES--SCCS--CCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh--cCcCCCcEEEEecc--cHhh--hhccCceEEEeeecCCCHHHHHHHHHHHhhhC
Confidence 468999999999999999998762 222212222 3321 1100 00000000000000001122345666677667
Q ss_pred cEEEEEcCCCccCHHHHHHHHhcCCCCCCceEEEEecchhh
Q 003086 263 RYLIVMDDVWGEDLAWWRRIYEGLPKGKGSSIIITTRNGKV 303 (849)
Q Consensus 263 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~s~ilvTtr~~~v 303 (849)
+-+|++|++-+ .+....+.... ..|..|+.|+...++
T Consensus 210 pd~illdE~~d--~e~~~~~l~~~--~~g~~vi~t~H~~~~ 246 (372)
T 2ewv_A 210 PDVIFVGEMRD--LETVETALRAA--ETGHLVFGTLHTNTA 246 (372)
T ss_dssp CSEEEESCCCS--HHHHHHHHHHH--TTTCEEEECCCCCSH
T ss_pred cCEEEECCCCC--HHHHHHHHHHH--hcCCEEEEEECcchH
Confidence 77999999975 44444333332 235567777765443
No 398
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.95 E-value=0.089 Score=49.50 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..+|+|+|+.|.||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999999876
No 399
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.93 E-value=0.078 Score=54.64 Aligned_cols=23 Identities=39% Similarity=0.424 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..+|+|+|++|+|||||++.+..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 45899999999999999999975
No 400
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.91 E-value=0.092 Score=50.98 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..+|.|.|+.|+||||+|+.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 401
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.83 E-value=0.092 Score=53.60 Aligned_cols=23 Identities=35% Similarity=0.824 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHh
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVF 205 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~ 205 (849)
...+|+|.|++|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 36789999999999999999986
No 402
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.75 E-value=0.083 Score=50.86 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..|+|.|+.|+||||+++.+..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999876
No 403
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=91.69 E-value=0.056 Score=51.42 Aligned_cols=107 Identities=13% Similarity=0.055 Sum_probs=56.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCC---CCCHHHHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASA---GDDRGELLRKINQYLL 260 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~l~~~l~ 260 (849)
-.+..++|..|.||||.+..+.+.... ... .++.+.... +.+.-...++..++.... ..+.. .+.+.+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~-~g~-kV~v~k~~~--d~r~~~~~i~s~~g~~~~a~~~~~~~----~i~~~~~ 79 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKI-AKQ-KIQVFKPEI--DNRYSKEDVVSHMGEKEQAVAIKNSR----EILKYFE 79 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH-TTC-CEEEEEEC---------CEEECTTSCEEECEEESSST----HHHHHCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH-CCC-EEEEEEecc--CccchHHHHHhhcCCceeeEeeCCHH----HHHHHHh
Confidence 468999999999999999877663221 222 233332211 111111122333322111 01112 2333344
Q ss_pred CccEEEEEcCCCccCHHHHHHHHhcCCCCCCceEEEEecc
Q 003086 261 GKRYLIVMDDVWGEDLAWWRRIYEGLPKGKGSSIIITTRN 300 (849)
Q Consensus 261 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~s~ilvTtr~ 300 (849)
++-=+|++|.+...+.+..+.+....+. +..||+|.+.
T Consensus 80 ~~~dvViIDEaqfl~~~~v~~l~~l~~~--~~~Vi~~Gl~ 117 (191)
T 1xx6_A 80 EDTEVIAIDEVQFFDDEIVEIVNKIAES--GRRVICAGLD 117 (191)
T ss_dssp TTCSEEEECSGGGSCTHHHHHHHHHHHT--TCEEEEEECS
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHhC--CCEEEEEecc
Confidence 4334999999876545556666554332 7789999885
No 404
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.66 E-value=0.1 Score=53.66 Aligned_cols=23 Identities=39% Similarity=0.419 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..+++|+|+.|+||||+++.++.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46999999999999999999976
No 405
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.64 E-value=0.091 Score=52.48 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
-.+++|+|++|+|||||++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 35899999999999999999874
No 406
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.59 E-value=0.069 Score=52.37 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
...|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999876
No 407
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.54 E-value=0.051 Score=56.85 Aligned_cols=53 Identities=23% Similarity=0.261 Sum_probs=33.5
Q ss_pred HHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCc-eEEEEeCCc
Q 003086 171 RKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFER-RMWVSVSQT 225 (849)
Q Consensus 171 ~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s~~ 225 (849)
-++++.+..-..+ ..++|+|.+|+|||+|+..+.+... +.+-+. ++++-+.+.
T Consensus 163 iraID~l~PigrG-QR~lIfg~~g~GKT~Ll~~Ia~~i~-~~~~dv~~V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPIGKG-QRGMIVAPPKAGKTTILKEIANGIA-ENHPDTIRIILLIDER 216 (427)
T ss_dssp HHHHHHHSCCBTT-CEEEEEECTTCCHHHHHHHHHHHHH-HHCTTSEEEEEECSCC
T ss_pred chhhhhcccccCC-ceEEEecCCCCChhHHHHHHHHHHh-hcCCCeEEEEEEeccC
Confidence 3567777653322 3578999999999999999887321 112232 345656543
No 408
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.53 E-value=0.11 Score=50.79 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..+|+|.|+.|.||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 409
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=91.51 E-value=0.12 Score=49.69 Aligned_cols=107 Identities=10% Similarity=-0.043 Sum_probs=53.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCC---CCCHHHHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASA---GDDRGELLRKINQYLL 260 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~l~~~l~ 260 (849)
-.+..++|..|.||||.|....... ..+-..++.+.... +.+.-...+++.++.... ..+.. .+.+...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~--~~~g~kVli~k~~~--d~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~~ 99 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRT--QFAKQHAIVFKPCI--DNRYSEEDVVSHNGLKVKAVPVSASK----DIFKHIT 99 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHH--HHTTCCEEEEECC-------------------CCEEECSSGG----GGGGGCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHH--HHCCCEEEEEEecc--CCcchHHHHHhhcCCeeEEeecCCHH----HHHHHHh
Confidence 4688899999999999997776632 22222333333221 112222234444443322 11222 2222223
Q ss_pred CccEEEEEcCCCccCHHHHHHHHhcCCCCCCceEEEEecc
Q 003086 261 GKRYLIVMDDVWGEDLAWWRRIYEGLPKGKGSSIIITTRN 300 (849)
Q Consensus 261 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~s~ilvTtr~ 300 (849)
++--+|++|.+.-.+.+..+.+....+ .|..||+|.+.
T Consensus 100 ~~~dvViIDEaQF~~~~~V~~l~~l~~--~~~~Vi~~Gl~ 137 (214)
T 2j9r_A 100 EEMDVIAIDEVQFFDGDIVEVVQVLAN--RGYRVIVAGLD 137 (214)
T ss_dssp SSCCEEEECCGGGSCTTHHHHHHHHHH--TTCEEEEEECS
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHhh--CCCEEEEEecc
Confidence 333499999997754555555554332 27789999985
No 410
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.43 E-value=0.13 Score=47.54 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999764
No 411
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.43 E-value=0.051 Score=52.87 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003086 186 AIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~ 206 (849)
+|+|.|..|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999876
No 412
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.43 E-value=0.1 Score=51.67 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+++|+|+.|.|||||.+.+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999865
No 413
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.39 E-value=0.7 Score=51.48 Aligned_cols=53 Identities=9% Similarity=-0.022 Sum_probs=37.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHh
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNL 239 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 239 (849)
-.++.|.|.+|+||||||..++.+...+ +=..++|++... +.+++...++...
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 4588999999999999999887642221 123577877654 5678887776544
No 414
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.38 E-value=0.08 Score=52.79 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+|+|+|+.|.||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 415
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.36 E-value=0.32 Score=46.47 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=29.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHH
Q 003086 186 AIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSML 236 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 236 (849)
.|+|=|.-|+||||.++.+.+ .....-..+++..-.......+..+.++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEECCCCCcHHHHHHHHh
Confidence 377889999999999999987 3433333344443322223334444444
No 416
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.34 E-value=0.1 Score=49.36 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003086 186 AIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999873
No 417
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.34 E-value=0.099 Score=59.86 Aligned_cols=43 Identities=23% Similarity=0.254 Sum_probs=35.3
Q ss_pred CccccccccHHHHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcC
Q 003086 161 TLVVGLEGDTRKIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
..++|.+..++.+...+..+ ..+.|+|++|+||||||+.+..-
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhcc
Confidence 46889888887777777654 37899999999999999999773
No 418
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.30 E-value=0.1 Score=51.23 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+++|+|+.|.|||||.+.+..
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999865
No 419
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.29 E-value=0.1 Score=50.34 Aligned_cols=74 Identities=15% Similarity=0.188 Sum_probs=42.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHH----------hcCCCCCCCHHHHHHHH
Q 003086 186 AIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRN----------LGDASAGDDRGELLRKI 255 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~----------l~~~~~~~~~~~~~~~l 255 (849)
+|.|.|++|+||||.|+.+... |. ...++. .+++++-+.. ......--+.+-....+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~------~g-~~~ist------GdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv 68 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE------KG-FVHIST------GDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALI 68 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH------HC-CEEEEH------HHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH------HC-CeEEcH------HHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHH
Confidence 5789999999999999998762 32 233332 2333332221 10111112344556666
Q ss_pred HHHhcCccEEEEEcCCCc
Q 003086 256 NQYLLGKRYLIVMDDVWG 273 (849)
Q Consensus 256 ~~~l~~~~~LlVlDdv~~ 273 (849)
.+.+..... +|||++-.
T Consensus 69 ~~~l~~~~~-~ilDGfPR 85 (206)
T 3sr0_A 69 EEVFPKHGN-VIFDGFPR 85 (206)
T ss_dssp HHHCCSSSC-EEEESCCC
T ss_pred HHhhccCCc-eEecCCch
Confidence 777755443 68899865
No 420
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.19 E-value=0.17 Score=50.51 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=25.9
Q ss_pred HHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 173 IKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 173 l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
+..||....+....|.|+|++|+|||.+|..+.+
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 4555554323345799999999999999999877
No 421
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.19 E-value=0.06 Score=50.21 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+++|+|..|.|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 422
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.15 E-value=0.11 Score=53.98 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+|+|.|+.|+||||||+.+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999876
No 423
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.14 E-value=0.33 Score=61.13 Aligned_cols=82 Identities=20% Similarity=0.186 Sum_probs=62.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCCC------CCCHHHHHHHHHH
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDASA------GDDRGELLRKINQ 257 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~ 257 (849)
-++|-|+|+.|+||||||.++.. ..+..=...+|+...+..++.- ++.++.... +++-++....+..
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a--~~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~ 1503 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 1503 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHH
Confidence 47899999999999999999886 3445556789999988888764 778877643 5566666666666
Q ss_pred Hh-cCccEEEEEcCCC
Q 003086 258 YL-LGKRYLIVMDDVW 272 (849)
Q Consensus 258 ~l-~~~~~LlVlDdv~ 272 (849)
.+ .+..-+||+|-|-
T Consensus 1504 ~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1504 LARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHTCCSEEEESCST
T ss_pred HHHcCCCCEEEEccHH
Confidence 66 3566799999884
No 424
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.12 E-value=0.11 Score=51.41 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+++|+|+.|.|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999965
No 425
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.12 E-value=0.076 Score=52.44 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=15.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHh
Q 003086 185 LAIGVVGMGGLGKTTIAQKVF 205 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~ 205 (849)
.+++|+|+.|+|||||++.+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEEEEECSCC----CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999998
No 426
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.10 E-value=0.13 Score=51.91 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
...++.+.|.||+||||++..+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 467899999999999999999875
No 427
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.10 E-value=0.11 Score=48.55 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.++++|+|..|+|||||+..+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 56899999999999999999876
No 428
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.08 E-value=0.16 Score=47.86 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcC
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
....|+|+|.+|+|||||.+.+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999874
No 429
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.08 E-value=0.13 Score=53.22 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.++|+|+|+.|+||||||..++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 430
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.06 E-value=0.12 Score=53.41 Aligned_cols=24 Identities=25% Similarity=0.255 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
...+|+|+|..|.|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999876
No 431
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.06 E-value=0.11 Score=50.19 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003086 186 AIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~ 206 (849)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999866
No 432
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.03 E-value=0.11 Score=50.99 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003086 186 AIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999876
No 433
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.00 E-value=0.3 Score=53.12 Aligned_cols=97 Identities=22% Similarity=0.227 Sum_probs=54.8
Q ss_pred HHHHHHhccCCCeEEEEEEcCCCCcHHHHH-HHHhcChhhhcccCc-eEEEEeCCcc-CHHHHHHHHHHHhcCC------
Q 003086 172 KIKDWLFEAEEGILAIGVVGMGGLGKTTIA-QKVFNDREIENWFER-RMWVSVSQTF-TEEQIMRSMLRNLGDA------ 242 (849)
Q Consensus 172 ~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~-~~wv~~s~~~-~~~~~~~~i~~~l~~~------ 242 (849)
+.++.|..-.. -..++|.|.+|+|||+|| ..+.+.. .-+. ++++-+.+.. .+.++.+.+...=...
T Consensus 164 raID~l~Pigr-GQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~ 238 (515)
T 2r9v_A 164 KAIDSMIPIGR-GQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVV 238 (515)
T ss_dssp HHHHHHSCEET-TCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEE
T ss_pred ccccccccccc-CCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEE
Confidence 45666654221 235789999999999996 5676632 2443 4677777543 4556666665421111
Q ss_pred -CCCCCHHH-H-----HHHHHHHh--cCccEEEEEcCCCc
Q 003086 243 -SAGDDRGE-L-----LRKINQYL--LGKRYLIVMDDVWG 273 (849)
Q Consensus 243 -~~~~~~~~-~-----~~~l~~~l--~~~~~LlVlDdv~~ 273 (849)
...+.... . .-.+.+++ +++.+||++||+-.
T Consensus 239 atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 239 ASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 11111111 1 11233444 57999999999843
No 434
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.95 E-value=0.12 Score=50.69 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..+|+|.|++|.||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999875
No 435
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.95 E-value=0.11 Score=50.78 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..|.|.|++|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999876
No 436
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.94 E-value=0.11 Score=50.59 Aligned_cols=21 Identities=33% Similarity=0.303 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003086 186 AIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999876
No 437
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.91 E-value=0.96 Score=49.24 Aligned_cols=52 Identities=12% Similarity=0.070 Sum_probs=36.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHh
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNL 239 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 239 (849)
..++.|.|.+|+||||+|..++.+...+ =..++|++.. .+.+++...++...
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlE--ms~~ql~~R~~~~~ 248 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLE--MGKKENIKRLIVTA 248 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSS--SCTTHHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECC--CCHHHHHHHHHHHH
Confidence 4589999999999999999987753222 2346676554 44556777766543
No 438
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.91 E-value=0.45 Score=46.39 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
-.++|.|++|+||||+|+.+..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHH
Confidence 3579999999999999998866
No 439
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.88 E-value=0.12 Score=53.30 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+|.|+|+.|+||||||+.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 440
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.87 E-value=0.12 Score=52.36 Aligned_cols=22 Identities=27% Similarity=0.444 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+++|+|+.|.|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4899999999999999999864
No 441
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.77 E-value=0.12 Score=51.95 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
-.+++|+|+.|.|||||.+.+..
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999965
No 442
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.75 E-value=0.14 Score=53.88 Aligned_cols=23 Identities=39% Similarity=0.419 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..+++|+|+.|+||||+++.++.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 57999999999999999999976
No 443
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.74 E-value=0.13 Score=49.03 Aligned_cols=24 Identities=17% Similarity=0.531 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
...|+|+|.+|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998764
No 444
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.72 E-value=0.14 Score=52.38 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.++|+|+|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 36899999999999999999876
No 445
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.72 E-value=0.17 Score=53.69 Aligned_cols=24 Identities=25% Similarity=0.091 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
...+++|+|++|.|||||++.+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999999986
No 446
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.66 E-value=0.13 Score=51.03 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+++|+|+.|.|||||.+.++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999965
No 447
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.64 E-value=0.15 Score=46.62 Aligned_cols=23 Identities=17% Similarity=0.455 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
+.|+|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998764
No 448
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.63 E-value=0.034 Score=52.89 Aligned_cols=64 Identities=14% Similarity=0.093 Sum_probs=28.2
Q ss_pred hhccccccceeeeeccCcccch----HhhcCCCCCCeEEEEeecCCCCchhhhccccCCCCCCCeEEE
Q 003086 681 LKNLTRLRKLGLQLTCGDEIEE----DALVNLRELQFLSISCFDSHGSDLVAKIDELYPPEQLDELSL 744 (849)
Q Consensus 681 l~~l~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~L~~L~l 744 (849)
|..-+.|+.|+|++|.+..... ..+..-+.|++|+|++|.+.........+.+.....|++|++
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L 133 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKA 133 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEEC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEEC
Confidence 3334455555555554433221 334444556666666555544333333333333333333333
No 449
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=90.60 E-value=0.98 Score=51.26 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
-.+++|+|+.|.|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999854
No 450
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.57 E-value=0.11 Score=50.34 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+++|+|+.|.|||||.+.++.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999965
No 451
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=90.56 E-value=0.34 Score=42.71 Aligned_cols=55 Identities=13% Similarity=0.086 Sum_probs=37.8
Q ss_pred eEeccCCCCCc--ccCccccCCCCCcEEeeccccCCccCChhhhcccCCcEeeccCCCCc
Q 003086 589 YLCLSNTHPLI--HLPPSLKKLKNLQILDVSYCQNLKMLPSYVQSFIQLRALDVTHCGSL 646 (849)
Q Consensus 589 ~L~L~~~~~~~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~~~ 646 (849)
.++.+++ .++ .+|..+ -.+|++|+|++|.+...-+..|..+++|+.|+|.+|...
T Consensus 12 ~v~Cs~~-~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRR-GLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSS-CCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCC-CCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666 566 777543 236889999866644444455678888999999888753
No 452
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.56 E-value=0.13 Score=51.66 Aligned_cols=23 Identities=26% Similarity=0.237 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
-.+++|+|+.|.|||||++.+..
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 35899999999999999999965
No 453
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.55 E-value=0.13 Score=50.90 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
..|.|.|++|+||||+|+.+..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 454
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.53 E-value=0.13 Score=51.54 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+++|+|+.|.|||||.+.+..
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999865
No 455
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.52 E-value=0.13 Score=51.78 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+++|+|+.|.|||||++.+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999976
No 456
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.43 E-value=0.14 Score=51.03 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+++|+|+.|.|||||++.+..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999965
No 457
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.42 E-value=0.14 Score=51.09 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+++|+|+.|.|||||++.+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999976
No 458
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.41 E-value=0.15 Score=50.68 Aligned_cols=23 Identities=30% Similarity=0.257 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
-.+++|+|+.|.|||||.+.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999965
No 459
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.39 E-value=0.14 Score=52.90 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999875
No 460
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.35 E-value=0.14 Score=49.08 Aligned_cols=24 Identities=17% Similarity=0.531 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
...|+|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999764
No 461
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.31 E-value=0.18 Score=47.52 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
...|+|+|.+|+|||||.+.+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999874
No 462
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.29 E-value=0.14 Score=51.17 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+++|+|+.|.|||||.+.++.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999965
No 463
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.29 E-value=0.16 Score=48.00 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
-+.|.|.|+.|+||||||..+...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999998763
No 464
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.26 E-value=0.15 Score=51.53 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+++|+|+.|.|||||++.++.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999976
No 465
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.26 E-value=0.15 Score=54.78 Aligned_cols=35 Identities=29% Similarity=0.441 Sum_probs=26.1
Q ss_pred HHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 172 KIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 172 ~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+.+.|........+++|+|..|+|||||.+.+..
T Consensus 57 ~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 57 AISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 34444443333457999999999999999999976
No 466
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.21 E-value=0.27 Score=48.32 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
...|+|.|++|+||||+++.+...
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 467
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.14 E-value=0.16 Score=51.82 Aligned_cols=23 Identities=30% Similarity=0.265 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.++|.|+|+.|+||||||..+..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 57899999999999999999876
No 468
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.13 E-value=0.15 Score=50.75 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+++|+|+.|.|||||.+.+..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999976
No 469
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.11 E-value=0.15 Score=51.19 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+++|+|+.|.|||||++.+..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999965
No 470
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.11 E-value=0.15 Score=51.54 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
-.+++|+|+.|.|||||++.++.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999965
No 471
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=90.04 E-value=0.8 Score=49.24 Aligned_cols=103 Identities=16% Similarity=0.036 Sum_probs=57.2
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCC---CC-CCCHHHHHHHHHH
Q 003086 182 EGILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDA---SA-GDDRGELLRKINQ 257 (849)
Q Consensus 182 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~---~~-~~~~~~~~~~l~~ 257 (849)
...++..|.|.+|.||||+.++.++. ....-++-. .+...++-+.+... .. ..........+.+
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~~-------~~~lVlTpT-----~~aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~~ 226 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVNF-------EEDLILVPG-----RQAAEMIRRRANASGIIVATKDNVRTVDSFLMN 226 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCCT-------TTCEEEESC-----HHHHHHHHHHHTTTSCCCCCTTTEEEHHHHHHT
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhcc-------CCeEEEeCC-----HHHHHHHHHHhhhcCccccccceEEEeHHhhcC
Confidence 46789999999999999999998762 122333222 23334444455321 11 1111112222222
Q ss_pred HhcCc---cEEEEEcCCCccCHHHHHHHHhcCCCCCCceEEEEec
Q 003086 258 YLLGK---RYLIVMDDVWGEDLAWWRRIYEGLPKGKGSSIIITTR 299 (849)
Q Consensus 258 ~l~~~---~~LlVlDdv~~~~~~~~~~l~~~l~~~~~s~ilvTtr 299 (849)
....+ --+||+|++.-.+...+..+....+. .+||+.-=
T Consensus 227 ~~~~~~~~~d~liiDE~sm~~~~~l~~l~~~~~~---~~vilvGD 268 (446)
T 3vkw_A 227 YGKGARCQFKRLFIDEGLMLHTGCVNFLVEMSLC---DIAYVYGD 268 (446)
T ss_dssp TTSSCCCCCSEEEEETGGGSCHHHHHHHHHHTTC---SEEEEEEC
T ss_pred CCCCCCCcCCEEEEeCcccCCHHHHHHHHHhCCC---CEEEEecC
Confidence 11111 24899999987667777766655432 56666654
No 472
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.03 E-value=0.35 Score=46.80 Aligned_cols=104 Identities=20% Similarity=0.212 Sum_probs=54.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCCC-----------CCCCHHHHHH
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDAS-----------AGDDRGELLR 253 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----------~~~~~~~~~~ 253 (849)
-.|.+.|.||+||||+|..+.... ....+ .+..+.+...-..... ..+..+.... ...+....
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l-~~~G~-~V~v~d~D~q~~~~~~--al~~gl~~~~~~~~~~~~~~~~e~~l~~~-- 80 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQ-LRQGV-RVMAGVVETHGRAETE--ALLNGLPQQPLLRTEYRGMTLEEMDLDAL-- 80 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH-HHTTC-CEEEEECCCTTCHHHH--HHHTTSCBCCCEEEEETTEEEEECCHHHH--
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH-HHCCC-CEEEEEeCCCCChhHH--HHhcCccccCcceeecCCcccccccHHHH--
Confidence 457889999999999988877632 22222 3445555443333211 1222222110 01122221
Q ss_pred HHHHHhcCccEEEEEcCCCcc------CHHHHHHHHhcCCCCCCceEEEEecch
Q 003086 254 KINQYLLGKRYLIVMDDVWGE------DLAWWRRIYEGLPKGKGSSIIITTRNG 301 (849)
Q Consensus 254 ~l~~~l~~~~~LlVlDdv~~~------~~~~~~~l~~~l~~~~~s~ilvTtr~~ 301 (849)
+ ..+.=++|+|++-.. ....|..+...++ .|..|+.|+.-+
T Consensus 81 -L----~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~--sgidVitT~Nlq 127 (228)
T 2r8r_A 81 -L----KAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA--AGIDVYTTVNVQ 127 (228)
T ss_dssp -H----HHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH--TTCEEEEEEEGG
T ss_pred -H----hcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc--CCCCEEEEcccc
Confidence 2 224559999986431 1235666655433 255788777643
No 473
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.02 E-value=0.29 Score=51.31 Aligned_cols=35 Identities=20% Similarity=0.412 Sum_probs=25.9
Q ss_pred HHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 172 KIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 172 ~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+++-+.-.-....+++|+|.+|+|||||.+.+..
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34444433323467999999999999999999875
No 474
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.96 E-value=0.17 Score=47.00 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
..-|+|+|.+|+|||||.+.+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456899999999999999999764
No 475
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.88 E-value=0.16 Score=51.19 Aligned_cols=22 Identities=36% Similarity=0.379 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+++|+|+.|.|||||.+.++.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999865
No 476
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=89.88 E-value=0.64 Score=55.35 Aligned_cols=48 Identities=17% Similarity=0.079 Sum_probs=30.3
Q ss_pred cCccEEEEEcCCCcc-CHHHH----HHHHhcCCCCCCceEEEEecchhhhhhc
Q 003086 260 LGKRYLIVMDDVWGE-DLAWW----RRIYEGLPKGKGSSIIITTRNGKVSQKM 307 (849)
Q Consensus 260 ~~~~~LlVlDdv~~~-~~~~~----~~l~~~l~~~~~s~ilvTtr~~~v~~~~ 307 (849)
..++-|++||..-.. ++..- ..+...+....|+.||++|...+++..+
T Consensus 739 a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~la 791 (934)
T 3thx_A 739 ATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALA 791 (934)
T ss_dssp CCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGG
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHh
Confidence 467789999998541 22222 2233334333488999999997776544
No 477
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.85 E-value=0.16 Score=50.74 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+++|+|+.|.|||||.+.+..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999976
No 478
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.84 E-value=0.16 Score=51.51 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+++|+|+.|.|||||.+.++.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999976
No 479
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=89.81 E-value=0.4 Score=52.11 Aligned_cols=97 Identities=23% Similarity=0.246 Sum_probs=54.9
Q ss_pred HHHHHHhccCCCeEEEEEEcCCCCcHHHHH-HHHhcChhhhcccCc-eEEEEeCCcc-CHHHHHHHHHHHhcCCC-----
Q 003086 172 KIKDWLFEAEEGILAIGVVGMGGLGKTTIA-QKVFNDREIENWFER-RMWVSVSQTF-TEEQIMRSMLRNLGDAS----- 243 (849)
Q Consensus 172 ~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~-~~wv~~s~~~-~~~~~~~~i~~~l~~~~----- 243 (849)
+.++.|..-.. -..++|.|.+|+|||+|| ..+.+.. +-+. ++++-+.+.. .+.++.+.+...=....
T Consensus 151 raID~l~Pigr-GQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~ 225 (502)
T 2qe7_A 151 KAIDSMIPIGR-GQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVT 225 (502)
T ss_dssp HHHHHSSCCBT-TCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEE
T ss_pred eeccccccccc-CCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEE
Confidence 44666654221 235789999999999996 4666632 2443 4677777543 45566666654211111
Q ss_pred --CCCCHHHH------HHHHHHHh--cCccEEEEEcCCCc
Q 003086 244 --AGDDRGEL------LRKINQYL--LGKRYLIVMDDVWG 273 (849)
Q Consensus 244 --~~~~~~~~------~~~l~~~l--~~~~~LlVlDdv~~ 273 (849)
..+..... .-.+.+++ +++.+||++||+-.
T Consensus 226 atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 226 ASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 11111111 11233444 57999999999843
No 480
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.81 E-value=0.17 Score=51.94 Aligned_cols=23 Identities=13% Similarity=0.326 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
-.+++|+|+.|.|||||++.+..
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 45899999999999999999875
No 481
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.79 E-value=0.16 Score=55.16 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
...+|.|+|++|.||||+|+.+..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 482
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=89.77 E-value=1 Score=44.35 Aligned_cols=102 Identities=17% Similarity=0.097 Sum_probs=54.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCC-CC-------------CCCHHHHH
Q 003086 187 IGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDA-SA-------------GDDRGELL 252 (849)
Q Consensus 187 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~-~~-------------~~~~~~~~ 252 (849)
+.|+|..|.|||.+|..+... . -..+++++ ....-..++.+.+.. ++.. .. -.+.+.+.
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~--~---~~~~liv~-P~~~L~~q~~~~~~~-~~~~~v~~~~g~~~~~~~i~v~T~~~l~ 183 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINE--L---STPTLIVV-PTLALAEQWKERLGI-FGEEYVGEFSGRIKELKPLTVSTYDSAY 183 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHH--S---CSCEEEEE-SSHHHHHHHHHHHGG-GCGGGEEEESSSCBCCCSEEEEEHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH--c---CCCEEEEe-CCHHHHHHHHHHHHh-CCCCeEEEEeCCCCCcCCEEEEeHHHHH
Confidence 778999999999999887652 1 12244443 222222333333332 3221 00 01223333
Q ss_pred HHHHHHhcCccEEEEEcCCCccCHHHHHHHHhcCCCCCCceEEEEe
Q 003086 253 RKINQYLLGKRYLIVMDDVWGEDLAWWRRIYEGLPKGKGSSIIITT 298 (849)
Q Consensus 253 ~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~s~ilvTt 298 (849)
.... .+.++--+||+|++.......+..+...++ ...++.+|.
T Consensus 184 ~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~--~~~~l~LSA 226 (237)
T 2fz4_A 184 VNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI--APFRLGLTA 226 (237)
T ss_dssp HTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC--CSEEEEEEE
T ss_pred hhHH-HhcccCCEEEEECCccCCChHHHHHHHhcc--CCEEEEEec
Confidence 3332 333445699999998754455677766664 233455554
No 483
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.70 E-value=0.16 Score=46.49 Aligned_cols=22 Identities=32% Similarity=0.718 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003086 186 AIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
-|+|+|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999764
No 484
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=89.68 E-value=0.4 Score=52.19 Aligned_cols=101 Identities=23% Similarity=0.260 Sum_probs=55.8
Q ss_pred HHHHHHhccCCCeEEEEEEcCCCCcHHHHH-HHHhcChhh----hcccC-ceEEEEeCCcc-CHHHHHHHHHHHhcCC--
Q 003086 172 KIKDWLFEAEEGILAIGVVGMGGLGKTTIA-QKVFNDREI----ENWFE-RRMWVSVSQTF-TEEQIMRSMLRNLGDA-- 242 (849)
Q Consensus 172 ~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~----~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~-- 242 (849)
+.++.|..-.. -..++|.|.+|+|||+|| ..+.+.... .++-+ .++++-+.+.. .+.++.+.+...=...
T Consensus 151 raID~l~Pigr-GQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~t 229 (510)
T 2ck3_A 151 KAVDSLVPIGR-GQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYT 229 (510)
T ss_dssp HHHHHHSCCBT-TCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGE
T ss_pred eeecccccccc-CCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccc
Confidence 45666654321 235789999999999995 566663221 01244 36777777653 4556666665421111
Q ss_pred -----CCCCCHHH-H-----HHHHHHHh--cCccEEEEEcCCCc
Q 003086 243 -----SAGDDRGE-L-----LRKINQYL--LGKRYLIVMDDVWG 273 (849)
Q Consensus 243 -----~~~~~~~~-~-----~~~l~~~l--~~~~~LlVlDdv~~ 273 (849)
...+.... . .-.+.+++ +++.+||++||+-.
T Consensus 230 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 230 IVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred eEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 11111111 1 11233344 57999999999843
No 485
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=89.66 E-value=0.27 Score=52.84 Aligned_cols=99 Identities=19% Similarity=0.246 Sum_probs=56.0
Q ss_pred HHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhhcccC----ceEEEEeCCc-cCHHHHHHHHHHH--hcCC--
Q 003086 172 KIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIENWFE----RRMWVSVSQT-FTEEQIMRSMLRN--LGDA-- 242 (849)
Q Consensus 172 ~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~----~~~wv~~s~~-~~~~~~~~~i~~~--l~~~-- 242 (849)
+.++.|..-..+. .++|.|.+|+|||+|+..+.+.... +-+ .++++-+.+. ..+.++.+++... +...
T Consensus 140 raID~l~pigrGQ-r~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvv 216 (465)
T 3vr4_D 140 SAIDHLNTLVRGQ-KLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVM 216 (465)
T ss_dssp HHHHTTSCCBTTC-BCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEE
T ss_pred eEEecccccccCC-EEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEE
Confidence 4455554422222 3689999999999999998874322 223 4566766654 3456666665543 1100
Q ss_pred ---CCCCCHHH------HHHHHHHHh---cCccEEEEEcCCCc
Q 003086 243 ---SAGDDRGE------LLRKINQYL---LGKRYLIVMDDVWG 273 (849)
Q Consensus 243 ---~~~~~~~~------~~~~l~~~l---~~~~~LlVlDdv~~ 273 (849)
...+.... ..-.+.+++ .++.+||++||+-.
T Consensus 217 V~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 217 FMNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 11122111 112344554 37899999999843
No 486
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.64 E-value=0.17 Score=46.58 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
.--|+|+|.+|+|||||+..+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 446789999999999999998764
No 487
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.60 E-value=0.17 Score=51.54 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.++.|+|.+|+|||||+..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999998875
No 488
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=89.58 E-value=0.3 Score=51.26 Aligned_cols=35 Identities=26% Similarity=0.331 Sum_probs=25.6
Q ss_pred HHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhc
Q 003086 172 KIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 172 ~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.+.+-+........+|+|+|.+|+|||||+..+..
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 33433333333568899999999999999999865
No 489
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.56 E-value=0.35 Score=48.03 Aligned_cols=49 Identities=24% Similarity=0.347 Sum_probs=32.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHH
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSM 235 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 235 (849)
-.++.|.|.+|+|||++|..++.+. ....-..+++++... +.+.+...+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSS--CHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeecccC--CHHHHHHHH
Confidence 3588999999999999998876531 222234566666553 455555544
No 490
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.54 E-value=0.22 Score=50.10 Aligned_cols=111 Identities=14% Similarity=0.157 Sum_probs=56.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCC-ccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhcCc
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQ-TFTEEQIMRSMLRNLGDASAGDDRGELLRKINQYLLGK 262 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 262 (849)
-.+++|+|+.|.|||||++.+..- ....+...+++.-.. .+-.... ..+ +....-+.+...+...+...+...
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i~~~~~~~-~~~---v~q~~~gl~~~~l~~~la~aL~~~ 98 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVFKHK-KSI---VNQREVGEDTKSFADALRAALRED 98 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCCCCS-SSE---EEEEEBTTTBSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCcceeecCCc-cee---eeHHHhCCCHHHHHHHHHHHHhhC
Confidence 468999999999999999998762 222223333322110 0000000 000 000000001122345566666556
Q ss_pred cEEEEEcCCCccCHHHHHHHHhcCCCCCCceEEEEecchhhh
Q 003086 263 RYLIVMDDVWGEDLAWWRRIYEGLPKGKGSSIIITTRNGKVS 304 (849)
Q Consensus 263 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~s~ilvTtr~~~v~ 304 (849)
+=++++|+.-+ .+....+.... ..|.-|++||...++.
T Consensus 99 p~illlDEp~D--~~~~~~~l~~~--~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 99 PDVIFVGEMRD--LETVETALRAA--ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp CSEEEESCCCS--HHHHHHHHHHH--HTTCEEEEEECCSSHH
T ss_pred CCEEEeCCCCC--HHHHHHHHHHH--ccCCEEEEEeCcchHH
Confidence 67889999964 44443333322 2366788888765543
No 491
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=89.53 E-value=0.19 Score=48.31 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
.-.|+|+|.+|+|||||...+..+
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999888754
No 492
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=89.43 E-value=0.28 Score=54.96 Aligned_cols=112 Identities=15% Similarity=0.105 Sum_probs=58.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCccCHHHHHHHHHHHhcCC---------------CC-CCC
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTFTEEQIMRSMLRNLGDA---------------SA-GDD 247 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~---------------~~-~~~ 247 (849)
-.++.|+|.+|+|||||++.++..... .=..++++...+. ...+...+ ..++.. .+ .-+
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~--~G~~vi~~~~ee~--~~~l~~~~-~~~g~~~~~~~~~g~~~~~~~~p~~LS 355 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACA--NKERAILFAYEES--RAQLLRNA-YSWGMDFEEMERQNLLKIVCAYPESAG 355 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHT--TTCCEEEEESSSC--HHHHHHHH-HTTSCCHHHHHHTTSEEECCCCGGGSC
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHh--CCCCEEEEEEeCC--HHHHHHHH-HHcCCCHHHHHhCCCEEEEEeccccCC
Confidence 458999999999999999999763211 1112455554332 33333332 122211 00 124
Q ss_pred HHHHHHHHH-HHhcCccEEEEEcCCCccCHH-----HHHH---HHhcCCCCCCceEEEEecch
Q 003086 248 RGELLRKIN-QYLLGKRYLIVMDDVWGEDLA-----WWRR---IYEGLPKGKGSSIIITTRNG 301 (849)
Q Consensus 248 ~~~~~~~l~-~~l~~~~~LlVlDdv~~~~~~-----~~~~---l~~~l~~~~~s~ilvTtr~~ 301 (849)
..+.+..+. ..+..++-+||+|-+..-+.. .... +...+. ..|..||+||...
T Consensus 356 ~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~-~~g~tvilvsh~~ 417 (525)
T 1tf7_A 356 LEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAK-QEEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHH-HTTCEEEEEEECS
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHH-hCCCEEEEEECcc
Confidence 444444443 445667789999943221111 2222 222222 2377788888653
No 493
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=89.40 E-value=0.18 Score=46.90 Aligned_cols=23 Identities=13% Similarity=0.323 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999764
No 494
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=89.34 E-value=0.18 Score=46.43 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003086 186 AIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
-|+|+|.+|+|||||.+.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999998653
No 495
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=89.30 E-value=0.26 Score=52.94 Aligned_cols=101 Identities=15% Similarity=0.205 Sum_probs=55.4
Q ss_pred HHHHHHhccCCCeEEEEEEcCCCCcHHHHHHHHhcChhhh--------cccC-ceEEEEeCCc-cCHHHHHHHHHHH--h
Q 003086 172 KIKDWLFEAEEGILAIGVVGMGGLGKTTIAQKVFNDREIE--------NWFE-RRMWVSVSQT-FTEEQIMRSMLRN--L 239 (849)
Q Consensus 172 ~l~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--------~~f~-~~~wv~~s~~-~~~~~~~~~i~~~--l 239 (849)
+.++.|..-..+ .-++|.|.+|+|||+|+..+.+..... ++-+ .++++-+.+. ..+.++.+++... +
T Consensus 136 raID~l~pigrG-Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~ 214 (464)
T 3gqb_B 136 STIDVMNTLVRG-QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGAL 214 (464)
T ss_dssp HHHHTTSCCBTT-CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGG
T ss_pred eeeecccccccC-CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccc
Confidence 345555442212 346889999999999999988743321 1112 4566666654 3455666655442 1
Q ss_pred cCC-----CCCC-CHHHH-----HHHHHHHh---cCccEEEEEcCCCc
Q 003086 240 GDA-----SAGD-DRGEL-----LRKINQYL---LGKRYLIVMDDVWG 273 (849)
Q Consensus 240 ~~~-----~~~~-~~~~~-----~~~l~~~l---~~~~~LlVlDdv~~ 273 (849)
... ...+ ..... .-.+.+++ +++.+||++||+-.
T Consensus 215 ~rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 215 SRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp GGEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred cceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 100 0111 11111 22344554 37899999999843
No 496
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=89.29 E-value=0.25 Score=45.48 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~ 206 (849)
--|+|+|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4588999999999999999864
No 497
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=89.28 E-value=0.4 Score=49.49 Aligned_cols=42 Identities=21% Similarity=0.341 Sum_probs=29.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcChhhhcccCceEEEEeCCcc
Q 003086 183 GILAIGVVGMGGLGKTTIAQKVFNDREIENWFERRMWVSVSQTF 226 (849)
Q Consensus 183 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 226 (849)
..++|+|+|-||+||||+|..+... ....=..++-|.+....
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~--La~~G~~VlliD~D~~~ 81 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDPKH 81 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESSSC
T ss_pred CceEEEEECCCCccHHHHHHHHHHH--HHHCCCeEEEEeCCCCC
Confidence 4688999999999999999888763 22222246666665443
No 498
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.19 E-value=0.19 Score=47.55 Aligned_cols=23 Identities=30% Similarity=0.687 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 003086 185 LAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 185 ~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
..|+|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999764
No 499
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.15 E-value=0.19 Score=50.75 Aligned_cols=21 Identities=48% Similarity=0.805 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003086 186 AIGVVGMGGLGKTTIAQKVFN 206 (849)
Q Consensus 186 vi~I~G~~GiGKTtLa~~v~~ 206 (849)
.++|+|+.|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999976
No 500
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.11 E-value=0.59 Score=45.22 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcC
Q 003086 184 ILAIGVVGMGGLGKTTIAQKVFND 207 (849)
Q Consensus 184 ~~vi~I~G~~GiGKTtLa~~v~~~ 207 (849)
...|.|.|+.|+||||+++.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 368899999999999999999773
Done!