Query 003087
Match_columns 849
No_of_seqs 376 out of 1104
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 16:46:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003087.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003087hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 3.4E-38 7.4E-43 329.9 26.4 280 7-342 112-461 (480)
2 PF08314 Sec39: Secretory path 100.0 2.7E-37 5.9E-42 374.1 3.5 298 530-841 1-320 (715)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.3E-32 2.9E-37 291.8 21.0 262 8-342 173-440 (459)
4 PF15492 Nbas_N: Neuroblastoma 100.0 8.3E-31 1.8E-35 269.2 26.7 258 14-285 1-281 (282)
5 KOG0271 Notchless-like WD40 re 100.0 1.9E-31 4.2E-36 279.4 21.3 250 7-317 154-479 (480)
6 KOG0272 U4/U6 small nuclear ri 100.0 3.6E-30 7.8E-35 273.4 17.6 237 9-317 216-458 (459)
7 KOG0263 Transcription initiati 100.0 2.5E-29 5.5E-34 285.1 23.0 245 11-324 379-654 (707)
8 KOG0279 G protein beta subunit 100.0 4.9E-28 1.1E-32 245.8 25.6 256 3-319 51-313 (315)
9 KOG0315 G-protein beta subunit 100.0 2.1E-27 4.6E-32 237.5 24.9 253 11-325 41-294 (311)
10 KOG0273 Beta-transducin family 99.9 3.5E-26 7.6E-31 245.8 25.3 256 11-342 236-503 (524)
11 KOG4256 Kinetochore component 99.9 2.9E-26 6.3E-31 260.3 24.5 592 64-780 94-796 (2209)
12 KOG0279 G protein beta subunit 99.9 6.7E-26 1.4E-30 230.3 24.4 248 7-325 12-268 (315)
13 KOG0284 Polyadenylation factor 99.9 1.1E-26 2.3E-31 245.9 17.6 259 11-340 97-358 (464)
14 KOG0645 WD40 repeat protein [G 99.9 1.8E-25 3.9E-30 226.3 25.2 270 5-319 9-311 (312)
15 KOG0291 WD40-repeat-containing 99.9 2.8E-25 6.1E-30 249.5 26.2 243 11-324 308-555 (893)
16 KOG0266 WD40 repeat-containing 99.9 7.8E-25 1.7E-29 252.7 25.6 253 10-325 159-415 (456)
17 KOG0319 WD40-repeat-containing 99.9 9.5E-24 2E-28 237.5 31.6 386 12-475 325-726 (775)
18 KOG0263 Transcription initiati 99.9 8.3E-25 1.8E-29 248.6 19.1 202 9-262 450-652 (707)
19 KOG0286 G-protein beta subunit 99.9 1.9E-23 4.1E-28 213.5 26.2 246 8-323 53-307 (343)
20 KOG0291 WD40-repeat-containing 99.9 1.9E-23 4.1E-28 234.9 28.6 261 6-322 346-615 (893)
21 KOG0318 WD40 repeat stress pro 99.9 6.7E-23 1.5E-27 223.0 27.2 264 11-323 60-354 (603)
22 KOG0265 U5 snRNP-specific prot 99.9 1.1E-22 2.4E-27 208.7 23.7 267 7-340 44-316 (338)
23 KOG0295 WD40 repeat-containing 99.9 4.5E-23 9.7E-28 216.1 21.2 244 9-324 107-369 (406)
24 KOG0318 WD40 repeat stress pro 99.9 4.1E-22 8.9E-27 216.9 29.4 290 11-342 191-583 (603)
25 cd00200 WD40 WD40 domain, foun 99.9 1.6E-21 3.4E-26 204.8 31.8 259 9-340 8-269 (289)
26 KOG0266 WD40 repeat-containing 99.9 1.5E-22 3.2E-27 233.8 25.9 243 7-319 200-454 (456)
27 KOG0282 mRNA splicing factor [ 99.9 1.9E-23 4.1E-28 225.8 16.6 252 9-317 213-503 (503)
28 KOG0645 WD40 repeat protein [G 99.9 2E-22 4.3E-27 204.3 21.5 225 10-259 61-311 (312)
29 KOG0273 Beta-transducin family 99.9 4.5E-22 9.7E-27 214.3 24.7 238 8-319 274-523 (524)
30 PLN00181 protein SPA1-RELATED; 99.9 8.2E-22 1.8E-26 243.1 30.8 244 10-322 483-741 (793)
31 KOG0281 Beta-TrCP (transducin 99.9 5.4E-23 1.2E-27 213.5 16.4 250 11-340 198-457 (499)
32 PTZ00421 coronin; Provisional 99.9 2.1E-21 4.6E-26 224.4 29.3 246 11-323 21-294 (493)
33 KOG0295 WD40 repeat-containing 99.9 2.4E-22 5.3E-27 210.6 18.8 240 7-317 147-404 (406)
34 KOG0286 G-protein beta subunit 99.9 1.7E-21 3.7E-26 199.3 23.6 243 7-317 94-343 (343)
35 PLN00181 protein SPA1-RELATED; 99.9 3.1E-21 6.7E-26 238.0 30.9 254 11-318 533-792 (793)
36 cd00200 WD40 WD40 domain, foun 99.9 1.5E-20 3.3E-25 197.3 28.5 236 10-317 51-289 (289)
37 KOG0319 WD40-repeat-containing 99.9 1.4E-21 3E-26 220.2 20.3 250 7-321 362-621 (775)
38 KOG0284 Polyadenylation factor 99.9 5.6E-22 1.2E-26 210.4 15.9 239 10-319 138-380 (464)
39 KOG0772 Uncharacterized conser 99.9 2.9E-21 6.3E-26 209.6 20.4 264 9-325 166-451 (641)
40 KOG0315 G-protein beta subunit 99.9 5.7E-21 1.2E-25 191.5 20.5 215 9-269 82-297 (311)
41 KOG0292 Vesicle coat complex C 99.9 5.2E-21 1.1E-25 217.9 21.6 258 8-323 7-284 (1202)
42 KOG0310 Conserved WD40 repeat- 99.9 3.2E-20 7E-25 201.3 25.3 240 11-322 69-312 (487)
43 PTZ00420 coronin; Provisional 99.9 9.5E-20 2.1E-24 212.0 28.6 239 15-322 31-296 (568)
44 KOG0293 WD40 repeat-containing 99.9 4.5E-20 9.7E-25 195.9 23.4 266 9-342 223-492 (519)
45 KOG0306 WD40-repeat-containing 99.9 1.7E-19 3.7E-24 203.3 27.8 271 4-339 367-641 (888)
46 PTZ00421 coronin; Provisional 99.9 1.3E-19 2.8E-24 209.7 27.7 210 9-262 74-293 (493)
47 KOG0285 Pleiotropic regulator 99.9 3.6E-20 7.8E-25 193.6 20.1 246 7-325 148-395 (460)
48 KOG0973 Histone transcription 99.8 4E-20 8.7E-25 217.0 22.8 256 8-321 67-357 (942)
49 KOG0643 Translation initiation 99.8 1.2E-19 2.7E-24 183.7 22.2 266 8-319 8-317 (327)
50 KOG0316 Conserved WD40 repeat- 99.8 1.4E-19 3E-24 180.2 21.9 245 9-325 16-263 (307)
51 KOG0292 Vesicle coat complex C 99.8 1E-19 2.2E-24 207.4 23.4 219 9-269 50-289 (1202)
52 KOG0275 Conserved WD40 repeat- 99.8 1E-20 2.2E-25 195.0 13.1 262 11-317 214-507 (508)
53 KOG1332 Vesicle coat complex C 99.8 1.8E-19 3.9E-24 180.5 20.9 253 11-320 12-287 (299)
54 KOG0641 WD40 repeat protein [G 99.8 9.5E-19 2.1E-23 173.0 25.7 261 11-319 33-349 (350)
55 KOG0281 Beta-TrCP (transducin 99.8 3.3E-20 7.1E-25 192.9 15.8 241 9-322 236-480 (499)
56 KOG0277 Peroxisomal targeting 99.8 6.7E-20 1.4E-24 184.5 16.1 238 11-317 61-307 (311)
57 KOG1407 WD40 repeat protein [F 99.8 6.1E-19 1.3E-23 178.2 22.3 244 9-325 19-267 (313)
58 KOG0296 Angio-associated migra 99.8 8.7E-19 1.9E-23 184.3 23.3 260 7-325 61-362 (399)
59 KOG0283 WD40 repeat-containing 99.8 4.4E-19 9.5E-24 203.8 22.7 249 9-319 266-576 (712)
60 KOG1797 Uncharacterized conser 99.8 2.3E-22 5E-27 231.4 -4.4 305 471-843 4-308 (1660)
61 KOG0640 mRNA cleavage stimulat 99.8 5.8E-19 1.2E-23 181.6 20.4 219 9-271 111-346 (430)
62 KOG0305 Anaphase promoting com 99.8 1.4E-18 3.1E-23 195.1 23.1 241 10-321 217-463 (484)
63 KOG0313 Microtubule binding pr 99.8 1.6E-18 3.5E-23 183.0 21.9 241 11-318 145-417 (423)
64 KOG0278 Serine/threonine kinas 99.8 1E-19 2.2E-24 182.5 12.0 238 9-322 58-300 (334)
65 PTZ00420 coronin; Provisional 99.8 6E-18 1.3E-22 197.0 28.4 233 9-303 73-319 (568)
66 KOG0305 Anaphase promoting com 99.8 2E-18 4.4E-23 193.9 23.3 252 16-342 183-441 (484)
67 KOG0275 Conserved WD40 repeat- 99.8 2.9E-19 6.4E-24 184.2 14.9 206 54-321 213-425 (508)
68 KOG0973 Histone transcription 99.8 9.3E-19 2E-23 205.6 20.4 253 11-322 14-315 (942)
69 KOG0293 WD40 repeat-containing 99.8 1.2E-18 2.6E-23 185.2 19.1 240 10-320 269-514 (519)
70 KOG0313 Microtubule binding pr 99.8 4.1E-18 8.9E-23 179.9 22.8 270 11-341 106-398 (423)
71 KOG1446 Histone H3 (Lys4) meth 99.8 2.5E-17 5.5E-22 171.2 28.1 250 11-325 15-268 (311)
72 KOG2096 WD40 repeat protein [G 99.8 1.4E-17 3E-22 172.2 23.8 274 10-337 86-378 (420)
73 KOG0276 Vesicle coat complex C 99.8 5.1E-18 1.1E-22 188.0 21.8 233 11-315 56-295 (794)
74 KOG0276 Vesicle coat complex C 99.8 5.8E-18 1.3E-22 187.6 22.1 242 9-322 12-260 (794)
75 KOG0285 Pleiotropic regulator 99.8 3.4E-18 7.5E-23 178.9 18.3 199 54-322 151-351 (460)
76 KOG0277 Peroxisomal targeting 99.8 7.9E-18 1.7E-22 169.6 19.9 254 1-325 1-271 (311)
77 KOG0308 Conserved WD40 repeat- 99.8 3.2E-18 7E-23 190.7 17.4 257 7-322 18-288 (735)
78 KOG1407 WD40 repeat protein [F 99.8 5.5E-17 1.2E-21 164.2 23.5 237 9-319 63-311 (313)
79 KOG0299 U3 snoRNP-associated p 99.8 2.3E-17 4.9E-22 178.1 21.8 262 7-329 139-423 (479)
80 KOG0282 mRNA splicing factor [ 99.8 3E-18 6.6E-23 185.8 14.5 235 54-341 214-483 (503)
81 KOG0310 Conserved WD40 repeat- 99.8 1.6E-17 3.5E-22 180.5 19.6 247 7-324 23-273 (487)
82 KOG0772 Uncharacterized conser 99.8 2E-17 4.4E-22 180.0 19.8 253 7-321 211-489 (641)
83 KOG0288 WD40 repeat protein Ti 99.8 7.1E-18 1.5E-22 179.7 15.9 239 9-317 218-459 (459)
84 KOG0640 mRNA cleavage stimulat 99.8 7.5E-18 1.6E-22 173.5 15.5 215 53-325 111-341 (430)
85 KOG0264 Nucleosome remodeling 99.8 2.8E-17 6E-22 177.6 20.5 262 11-320 125-405 (422)
86 KOG0265 U5 snRNP-specific prot 99.8 3.9E-17 8.4E-22 168.2 20.5 248 2-315 81-334 (338)
87 KOG0274 Cdc4 and related F-box 99.8 4.3E-17 9.3E-22 189.3 23.5 235 11-325 209-447 (537)
88 KOG0301 Phospholipase A2-activ 99.7 5.5E-17 1.2E-21 182.2 20.4 226 16-322 64-291 (745)
89 KOG0274 Cdc4 and related F-box 99.7 1E-16 2.2E-21 186.1 23.4 236 9-322 248-485 (537)
90 KOG0288 WD40 repeat protein Ti 99.7 1.7E-17 3.8E-22 176.8 14.8 263 9-342 174-441 (459)
91 KOG0283 WD40 repeat-containing 99.7 3.9E-17 8.5E-22 187.9 18.6 218 53-322 266-535 (712)
92 KOG0306 WD40-repeat-containing 99.7 1.8E-16 3.9E-21 179.2 22.4 248 11-326 413-671 (888)
93 KOG1332 Vesicle coat complex C 99.7 7.4E-17 1.6E-21 161.9 16.7 224 54-340 11-275 (299)
94 KOG0316 Conserved WD40 repeat- 99.7 1.9E-16 4.1E-21 158.1 19.3 201 53-324 16-218 (307)
95 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 1E-15 2.3E-20 164.9 26.5 245 11-324 31-284 (300)
96 KOG2445 Nuclear pore complex c 99.7 1.3E-15 2.7E-20 157.5 24.5 273 11-321 14-320 (361)
97 KOG0278 Serine/threonine kinas 99.7 6.3E-17 1.4E-21 162.6 14.5 195 13-261 103-299 (334)
98 KOG0296 Angio-associated migra 99.7 8.9E-16 1.9E-20 161.8 23.4 252 7-319 103-398 (399)
99 KOG0647 mRNA export protein (c 99.7 7.2E-16 1.6E-20 159.0 21.8 269 11-340 28-312 (347)
100 KOG0299 U3 snoRNP-associated p 99.7 8.7E-16 1.9E-20 166.0 21.3 234 9-303 201-438 (479)
101 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 3E-15 6.6E-20 161.4 25.3 236 22-324 1-242 (300)
102 KOG0294 WD40 repeat-containing 99.7 2.6E-15 5.6E-20 155.7 22.2 240 6-322 39-284 (362)
103 KOG0268 Sof1-like rRNA process 99.7 2.6E-16 5.6E-21 165.4 14.2 248 8-323 64-349 (433)
104 KOG0289 mRNA splicing factor [ 99.7 3E-15 6.6E-20 160.5 22.0 239 11-319 220-460 (506)
105 KOG0300 WD40 repeat-containing 99.7 1.7E-15 3.6E-20 156.4 17.9 253 9-322 147-431 (481)
106 KOG0646 WD40 repeat protein [G 99.7 2.9E-15 6.2E-20 162.3 19.8 217 11-268 82-315 (476)
107 KOG1274 WD40 repeat protein [G 99.7 9.2E-15 2E-19 169.1 24.6 249 10-321 13-264 (933)
108 KOG0267 Microtubule severing p 99.7 1.7E-16 3.8E-21 178.7 10.3 228 15-314 33-262 (825)
109 KOG0269 WD40 repeat-containing 99.7 8.1E-16 1.8E-20 174.7 15.7 242 15-322 92-343 (839)
110 KOG2048 WD40 repeat protein [G 99.7 2E-14 4.2E-19 161.8 25.6 251 11-323 26-279 (691)
111 KOG0289 mRNA splicing factor [ 99.7 1.7E-14 3.7E-19 154.8 23.9 245 7-318 258-505 (506)
112 KOG2096 WD40 repeat protein [G 99.6 1.3E-14 2.8E-19 150.4 20.4 217 54-319 86-308 (420)
113 KOG0269 WD40 repeat-containing 99.6 7.6E-15 1.7E-19 166.9 19.9 263 11-340 40-328 (839)
114 KOG0301 Phospholipase A2-activ 99.6 1.4E-14 3E-19 163.1 20.4 233 11-323 15-253 (745)
115 KOG0639 Transducin-like enhanc 99.6 3.8E-15 8.3E-20 161.6 15.2 237 9-318 464-703 (705)
116 KOG0639 Transducin-like enhanc 99.6 7.3E-15 1.6E-19 159.5 17.2 247 11-325 420-669 (705)
117 KOG0308 Conserved WD40 repeat- 99.6 3.5E-15 7.6E-20 166.7 14.7 220 59-342 29-265 (735)
118 KOG0643 Translation initiation 99.6 3.3E-14 7.1E-19 144.6 19.9 214 54-324 10-225 (327)
119 KOG0307 Vesicle coat complex C 99.6 6.3E-15 1.4E-19 174.3 16.7 250 11-322 65-330 (1049)
120 KOG1446 Histone H3 (Lys4) meth 99.6 2.6E-13 5.7E-18 141.5 25.8 243 12-319 58-303 (311)
121 KOG1274 WD40 repeat protein [G 99.6 1.1E-13 2.3E-18 160.4 24.4 222 14-302 58-282 (933)
122 KOG1273 WD40 repeat protein [G 99.6 5.6E-14 1.2E-18 145.7 19.7 254 13-325 26-328 (405)
123 PRK11028 6-phosphogluconolacto 99.6 6.7E-13 1.5E-17 147.2 29.2 259 11-319 35-304 (330)
124 KOG4283 Transcription-coupled 99.6 1.3E-13 2.9E-18 141.7 20.9 221 9-268 42-285 (397)
125 KOG1063 RNA polymerase II elon 99.6 1.9E-13 4.1E-18 154.1 23.8 272 8-321 265-650 (764)
126 KOG0264 Nucleosome remodeling 99.6 4.9E-14 1.1E-18 152.7 18.5 213 13-261 180-406 (422)
127 KOG0302 Ribosome Assembly prot 99.6 6.8E-14 1.5E-18 148.1 18.7 255 7-311 148-431 (440)
128 KOG4283 Transcription-coupled 99.6 4.2E-14 9E-19 145.3 16.2 219 55-325 44-282 (397)
129 KOG1036 Mitotic spindle checkp 99.6 4.4E-13 9.6E-18 139.2 23.8 235 11-308 14-293 (323)
130 KOG2048 WD40 repeat protein [G 99.6 1.5E-13 3.3E-18 154.7 21.7 229 54-342 25-255 (691)
131 PRK01742 tolB translocation pr 99.6 7.9E-14 1.7E-18 160.3 20.2 191 11-259 204-401 (429)
132 KOG2055 WD40 repeat protein [G 99.6 3E-13 6.6E-18 146.4 22.1 259 11-319 214-512 (514)
133 KOG0641 WD40 repeat protein [G 99.6 3.7E-13 8.1E-18 133.6 20.9 208 7-259 86-349 (350)
134 KOG0300 WD40 repeat-containing 99.5 1.9E-13 4.1E-18 141.4 18.3 248 8-321 188-478 (481)
135 KOG4328 WD40 protein [Function 99.5 8.9E-13 1.9E-17 142.8 23.2 262 11-329 187-461 (498)
136 KOG1009 Chromatin assembly com 99.5 2.2E-13 4.7E-18 145.7 17.5 153 11-182 14-187 (434)
137 KOG1036 Mitotic spindle checkp 99.5 7.4E-13 1.6E-17 137.5 20.1 242 54-344 13-297 (323)
138 KOG1007 WD repeat protein TSSC 99.5 7.3E-13 1.6E-17 136.1 19.5 214 10-260 123-362 (370)
139 KOG0321 WD40 repeat-containing 99.5 8.9E-13 1.9E-17 147.5 21.7 258 9-322 99-394 (720)
140 KOG1408 WD40 repeat protein [F 99.5 4.8E-13 1E-17 150.4 19.6 250 10-321 459-715 (1080)
141 KOG0267 Microtubule severing p 99.5 2E-14 4.3E-19 162.4 8.7 202 54-324 28-231 (825)
142 KOG0771 Prolactin regulatory e 99.5 2.6E-13 5.6E-18 146.1 16.1 207 13-260 147-355 (398)
143 KOG0270 WD40 repeat-containing 99.5 6.1E-13 1.3E-17 143.7 18.5 238 21-322 191-452 (463)
144 KOG0302 Ribosome Assembly prot 99.5 4.7E-13 1E-17 141.8 17.0 208 54-321 151-380 (440)
145 KOG0646 WD40 repeat protein [G 99.5 1.4E-12 3E-17 141.7 19.9 251 22-324 50-312 (476)
146 KOG1538 Uncharacterized conser 99.5 9.3E-13 2E-17 147.0 18.7 252 12-319 14-293 (1081)
147 PRK03629 tolB translocation pr 99.5 2.3E-12 4.9E-17 148.2 22.8 198 11-261 199-408 (429)
148 KOG2106 Uncharacterized conser 99.5 6.8E-12 1.5E-16 137.1 24.3 241 7-316 244-518 (626)
149 KOG1539 WD repeat protein [Gen 99.5 1.7E-12 3.8E-17 148.9 20.7 241 11-321 396-650 (910)
150 KOG1063 RNA polymerase II elon 99.5 5.5E-12 1.2E-16 142.4 23.9 122 158-319 570-699 (764)
151 PRK01742 tolB translocation pr 99.5 3E-12 6.6E-17 147.3 22.4 212 31-319 184-401 (429)
152 KOG2445 Nuclear pore complex c 99.5 6E-12 1.3E-16 130.6 21.9 230 53-322 12-259 (361)
153 KOG1539 WD repeat protein [Gen 99.5 1.7E-12 3.8E-17 148.9 19.1 196 11-259 449-648 (910)
154 KOG1408 WD40 repeat protein [F 99.5 3.6E-12 7.9E-17 143.5 21.0 229 55-342 460-697 (1080)
155 KOG2055 WD40 repeat protein [G 99.5 2.1E-12 4.6E-17 140.0 18.4 207 54-322 213-420 (514)
156 COG2319 FOG: WD40 repeat [Gene 99.4 4E-11 8.8E-16 131.8 28.7 263 9-340 64-336 (466)
157 KOG1963 WD40 repeat protein [G 99.4 9.7E-12 2.1E-16 144.3 23.8 280 11-322 206-541 (792)
158 PRK11028 6-phosphogluconolacto 99.4 4.3E-11 9.3E-16 132.8 28.2 249 24-321 5-260 (330)
159 KOG1034 Transcriptional repres 99.4 7.7E-12 1.7E-16 130.8 20.5 263 11-319 39-383 (385)
160 KOG4378 Nuclear protein COP1 [ 99.4 6.6E-12 1.4E-16 136.8 20.6 243 12-323 36-284 (673)
161 KOG0294 WD40 repeat-containing 99.4 5E-12 1.1E-16 131.6 18.9 198 53-322 42-240 (362)
162 KOG4328 WD40 protein [Function 99.4 2.7E-12 5.8E-17 139.1 17.6 204 54-319 186-399 (498)
163 KOG0771 Prolactin regulatory e 99.4 1.6E-12 3.6E-17 140.0 15.6 203 58-322 148-357 (398)
164 KOG2919 Guanine nucleotide-bin 99.4 5.1E-12 1.1E-16 131.7 18.0 199 19-261 120-329 (406)
165 KOG2919 Guanine nucleotide-bin 99.4 1.4E-11 3E-16 128.6 19.9 255 11-321 50-329 (406)
166 PF08662 eIF2A: Eukaryotic tra 99.4 1.1E-11 2.3E-16 127.1 19.0 154 14-261 9-181 (194)
167 KOG0647 mRNA export protein (c 99.4 2.6E-11 5.7E-16 125.7 21.2 226 11-304 73-307 (347)
168 PRK05137 tolB translocation pr 99.4 3.1E-11 6.7E-16 139.2 22.4 198 11-261 202-414 (435)
169 KOG1523 Actin-related protein 99.4 4.5E-11 9.8E-16 124.9 20.8 250 11-310 11-269 (361)
170 KOG1007 WD repeat protein TSSC 99.4 6.6E-11 1.4E-15 121.9 21.1 264 11-320 64-362 (370)
171 KOG2106 Uncharacterized conser 99.4 6.2E-11 1.3E-15 129.7 21.9 251 9-318 367-625 (626)
172 KOG0307 Vesicle coat complex C 99.4 4.3E-12 9.4E-17 150.6 14.0 250 10-326 6-291 (1049)
173 COG2319 FOG: WD40 repeat [Gene 99.4 3.2E-10 7E-15 124.6 28.2 244 12-322 111-362 (466)
174 KOG0268 Sof1-like rRNA process 99.4 5E-12 1.1E-16 133.5 12.5 214 53-322 65-305 (433)
175 KOG1445 Tumor-specific antigen 99.3 2.2E-11 4.7E-16 135.7 17.5 203 15-261 584-800 (1012)
176 KOG0322 G-protein beta subunit 99.3 1.2E-11 2.7E-16 125.9 14.1 261 10-318 14-322 (323)
177 KOG1445 Tumor-specific antigen 99.3 1.6E-11 3.5E-16 136.7 15.7 204 61-321 586-800 (1012)
178 PRK04922 tolB translocation pr 99.3 5.2E-11 1.1E-15 137.3 20.7 198 11-261 204-413 (433)
179 PRK05137 tolB translocation pr 99.3 2.6E-10 5.6E-15 131.6 26.1 200 54-322 201-415 (435)
180 KOG4378 Nuclear protein COP1 [ 99.3 2.5E-11 5.4E-16 132.3 16.2 214 21-302 90-305 (673)
181 PRK03629 tolB translocation pr 99.3 1.9E-10 4.1E-15 132.4 24.5 215 32-321 180-408 (429)
182 PRK02889 tolB translocation pr 99.3 7.4E-11 1.6E-15 135.7 20.9 189 11-251 196-392 (427)
183 KOG2110 Uncharacterized conser 99.3 2.6E-10 5.7E-15 121.3 22.6 238 12-322 7-251 (391)
184 KOG1538 Uncharacterized conser 99.3 3.5E-11 7.7E-16 134.7 16.2 212 56-340 14-241 (1081)
185 PRK04922 tolB translocation pr 99.3 2.8E-10 6.1E-15 131.2 24.5 217 32-321 185-413 (433)
186 KOG4227 WD40 repeat protein [G 99.3 1.9E-10 4E-15 122.3 20.6 265 9-323 55-326 (609)
187 PRK02889 tolB translocation pr 99.3 4.4E-10 9.6E-15 129.3 25.2 162 54-262 195-363 (427)
188 KOG1524 WD40 repeat-containing 99.3 2.7E-11 5.9E-16 133.1 13.9 204 24-315 77-282 (737)
189 KOG0303 Actin-binding protein 99.3 2.2E-10 4.9E-15 122.3 20.0 207 53-322 80-297 (472)
190 KOG4497 Uncharacterized conser 99.3 1.7E-09 3.7E-14 113.3 24.1 265 16-325 14-397 (447)
191 KOG1963 WD40 repeat protein [G 99.2 6.2E-10 1.3E-14 129.5 21.8 248 15-322 21-325 (792)
192 KOG0644 Uncharacterized conser 99.2 5.2E-11 1.1E-15 136.5 11.1 252 9-319 189-468 (1113)
193 KOG0270 WD40 repeat-containing 99.2 2E-10 4.4E-15 124.5 14.9 241 16-322 131-407 (463)
194 KOG1009 Chromatin assembly com 99.2 1.4E-10 3.1E-15 124.4 11.3 155 158-341 11-174 (434)
195 KOG0321 WD40 repeat-containing 99.2 2.3E-09 5E-14 120.6 21.3 286 16-342 55-370 (720)
196 KOG0650 WD40 repeat nucleolar 99.1 9.6E-10 2.1E-14 122.7 17.4 247 9-318 399-679 (733)
197 KOG1272 WD40-repeat-containing 99.1 1.4E-10 3.1E-15 126.0 10.6 231 10-317 129-360 (545)
198 PRK00178 tolB translocation pr 99.1 3.2E-09 6.9E-14 122.3 22.5 198 11-261 199-408 (430)
199 KOG2394 WD40 protein DMR-N9 [G 99.1 1.8E-10 3.9E-15 127.1 10.5 122 11-140 291-456 (636)
200 PRK01029 tolB translocation pr 99.1 5.2E-09 1.1E-13 120.3 23.0 204 11-261 185-405 (428)
201 KOG0649 WD40 repeat protein [G 99.1 4.3E-09 9.4E-14 106.4 18.9 247 11-321 11-276 (325)
202 KOG0290 Conserved WD40 repeat- 99.1 5.4E-09 1.2E-13 108.1 19.8 252 12-323 46-322 (364)
203 KOG0642 Cell-cycle nuclear pro 99.1 6.9E-10 1.5E-14 123.5 14.2 259 11-326 295-568 (577)
204 PRK04792 tolB translocation pr 99.1 5.1E-09 1.1E-13 121.1 21.7 198 11-261 218-427 (448)
205 TIGR02800 propeller_TolB tol-p 99.1 1.2E-08 2.5E-13 116.8 24.5 160 54-261 189-356 (417)
206 KOG1188 WD40 repeat protein [G 99.1 4E-09 8.7E-14 111.3 18.4 201 67-322 41-245 (376)
207 KOG0642 Cell-cycle nuclear pro 99.1 1.2E-09 2.6E-14 121.6 15.1 208 9-263 343-565 (577)
208 KOG2139 WD40 repeat protein [G 99.1 1.4E-08 3.1E-13 107.8 22.2 217 11-260 141-384 (445)
209 KOG2111 Uncharacterized conser 99.1 2.7E-08 5.9E-13 104.4 23.3 191 22-261 58-258 (346)
210 TIGR02800 propeller_TolB tol-p 99.1 7.1E-09 1.5E-13 118.6 21.3 195 12-260 191-398 (417)
211 KOG1587 Cytoplasmic dynein int 99.1 1.2E-08 2.5E-13 118.7 22.9 244 32-322 223-475 (555)
212 PF08662 eIF2A: Eukaryotic tra 99.1 3.4E-09 7.4E-14 108.6 16.1 114 162-325 61-184 (194)
213 PRK04792 tolB translocation pr 99.1 2E-08 4.4E-13 116.2 24.0 160 54-261 217-384 (448)
214 KOG2110 Uncharacterized conser 99.0 1.3E-08 2.9E-13 108.5 19.7 196 13-261 49-250 (391)
215 KOG2139 WD40 repeat protein [G 99.0 6.5E-09 1.4E-13 110.3 17.2 208 56-321 100-311 (445)
216 KOG1524 WD40 repeat-containing 99.0 4.4E-09 9.6E-14 116.0 16.4 233 8-314 12-250 (737)
217 KOG2111 Uncharacterized conser 99.0 2.6E-08 5.7E-13 104.5 21.3 242 11-322 6-259 (346)
218 KOG0303 Actin-binding protein 99.0 2.8E-09 6.1E-14 114.1 14.1 165 100-322 82-252 (472)
219 PRK01029 tolB translocation pr 99.0 6.5E-08 1.4E-12 111.3 25.7 205 56-322 186-406 (428)
220 KOG2394 WD40 protein DMR-N9 [G 99.0 1.7E-08 3.7E-13 111.8 19.3 214 13-262 126-365 (636)
221 KOG1523 Actin-related protein 99.0 1.3E-08 2.8E-13 106.8 17.4 220 54-322 10-239 (361)
222 KOG1587 Cytoplasmic dynein int 99.0 4.4E-08 9.5E-13 113.9 23.7 255 11-321 243-518 (555)
223 PRK00178 tolB translocation pr 99.0 5.4E-08 1.2E-12 112.2 24.0 160 54-261 198-365 (430)
224 KOG1240 Protein kinase contain 99.0 4.3E-08 9.4E-13 117.4 23.0 266 11-324 1049-1339(1431)
225 KOG1273 WD40 repeat protein [G 99.0 2.5E-08 5.3E-13 104.3 17.9 203 55-320 24-227 (405)
226 KOG1034 Transcriptional repres 99.0 8.7E-09 1.9E-13 108.2 14.7 127 3-139 82-214 (385)
227 KOG0290 Conserved WD40 repeat- 99.0 4.2E-08 9.1E-13 101.6 18.8 204 11-260 97-319 (364)
228 KOG1188 WD40 repeat protein [G 98.9 3.4E-08 7.3E-13 104.5 17.1 196 23-263 41-246 (376)
229 KOG0322 G-protein beta subunit 98.9 4.9E-09 1.1E-13 107.2 10.3 145 68-258 167-322 (323)
230 PF10282 Lactonase: Lactonase, 98.9 1.1E-06 2.3E-11 98.5 28.9 261 12-319 38-322 (345)
231 KOG1310 WD40 repeat protein [G 98.9 3.6E-08 7.7E-13 109.3 16.2 229 8-263 48-307 (758)
232 KOG0650 WD40 repeat nucleolar 98.9 2.9E-08 6.3E-13 111.1 15.4 202 11-256 522-732 (733)
233 PF02239 Cytochrom_D1: Cytochr 98.9 5E-07 1.1E-11 101.7 25.3 266 14-324 40-352 (369)
234 PF10282 Lactonase: Lactonase, 98.8 9.8E-07 2.1E-11 98.8 26.2 215 11-259 87-322 (345)
235 KOG1354 Serine/threonine prote 98.8 1.2E-07 2.7E-12 100.2 16.3 279 11-323 26-363 (433)
236 PLN02919 haloacid dehalogenase 98.8 1.6E-06 3.4E-11 109.7 28.4 282 11-322 568-891 (1057)
237 KOG2321 WD40 repeat protein [G 98.7 1.1E-06 2.3E-11 98.5 21.9 249 12-323 53-306 (703)
238 TIGR02658 TTQ_MADH_Hv methylam 98.7 2.3E-06 4.9E-11 94.9 24.5 244 18-325 53-336 (352)
239 KOG1517 Guanine nucleotide bin 98.7 5.8E-07 1.3E-11 106.4 20.5 248 21-322 1122-1384(1387)
240 KOG0649 WD40 repeat protein [G 98.7 1.2E-06 2.7E-11 88.9 20.1 205 10-261 62-276 (325)
241 KOG1334 WD40 repeat protein [G 98.7 6E-07 1.3E-11 98.9 16.6 268 7-324 139-429 (559)
242 KOG4227 WD40 repeat protein [G 98.6 5E-07 1.1E-11 96.7 14.7 212 53-322 55-277 (609)
243 KOG0974 WD-repeat protein WDR6 98.6 5E-07 1.1E-11 107.4 16.1 200 56-321 89-290 (967)
244 KOG1517 Guanine nucleotide bin 98.6 6.6E-07 1.4E-11 106.0 16.6 208 16-261 1171-1383(1387)
245 KOG1354 Serine/threonine prote 98.6 4.3E-07 9.3E-12 96.2 13.6 239 54-320 25-302 (433)
246 KOG1310 WD40 repeat protein [G 98.6 9.2E-07 2E-11 98.4 16.2 238 54-322 50-306 (758)
247 KOG4497 Uncharacterized conser 98.6 5.1E-07 1.1E-11 95.1 13.5 109 60-205 14-124 (447)
248 KOG1240 Protein kinase contain 98.6 1.4E-06 2.9E-11 105.0 18.6 215 53-322 1047-1276(1431)
249 COG2706 3-carboxymuconate cycl 98.5 5.8E-05 1.2E-09 81.4 27.1 262 11-320 40-322 (346)
250 KOG1272 WD40-repeat-containing 98.5 1.3E-07 2.8E-12 103.4 6.9 190 11-258 171-361 (545)
251 KOG0974 WD-repeat protein WDR6 98.5 6E-07 1.3E-11 106.7 13.0 147 15-187 138-285 (967)
252 KOG2114 Vacuolar assembly/sort 98.5 0.00041 8.9E-09 81.8 35.2 415 60-550 29-500 (933)
253 KOG3881 Uncharacterized conser 98.5 5.5E-06 1.2E-10 89.4 18.2 208 11-263 106-324 (412)
254 PRK04043 tolB translocation pr 98.5 8.1E-06 1.8E-10 93.6 20.8 202 11-261 188-402 (419)
255 KOG4547 WD40 repeat-containing 98.5 4E-06 8.6E-11 94.8 17.4 201 62-320 1-221 (541)
256 PF04762 IKI3: IKI3 family; I 98.5 1.4E-05 3.1E-10 99.6 24.2 246 11-322 76-336 (928)
257 PRK04043 tolB translocation pr 98.5 1.6E-05 3.6E-10 91.1 22.5 196 56-322 189-403 (419)
258 COG2706 3-carboxymuconate cycl 98.5 0.00019 4.1E-09 77.5 28.3 251 30-321 15-276 (346)
259 KOG2315 Predicted translation 98.5 2.6E-05 5.7E-10 87.7 22.6 242 7-322 122-393 (566)
260 KOG0644 Uncharacterized conser 98.4 1.1E-06 2.3E-11 102.0 10.9 193 54-322 190-386 (1113)
261 KOG1797 Uncharacterized conser 98.4 5.5E-07 1.2E-11 106.4 8.3 261 378-672 411-690 (1660)
262 PLN02919 haloacid dehalogenase 98.4 1.3E-05 2.9E-10 101.5 20.6 224 11-262 624-891 (1057)
263 KOG4532 WD40-like repeat conta 98.4 2.4E-05 5.2E-10 80.8 18.0 206 59-324 72-287 (344)
264 KOG1064 RAVE (regulator of V-A 98.3 7.8E-06 1.7E-10 101.6 14.4 202 8-270 2206-2408(2439)
265 PF04841 Vps16_N: Vps16, N-ter 98.3 0.00054 1.2E-08 78.5 28.6 69 14-87 32-112 (410)
266 KOG4547 WD40 repeat-containing 98.2 4.1E-05 8.8E-10 86.8 17.6 190 19-261 2-222 (541)
267 KOG3914 WD repeat protein WDR4 98.2 1.7E-05 3.6E-10 86.2 13.8 165 57-269 65-232 (390)
268 KOG3881 Uncharacterized conser 98.2 6.2E-05 1.3E-09 81.5 17.5 254 7-322 52-323 (412)
269 COG5170 CDC55 Serine/threonine 98.2 2.6E-05 5.6E-10 81.8 14.0 243 54-325 26-315 (460)
270 COG5170 CDC55 Serine/threonine 98.2 3.1E-05 6.6E-10 81.3 13.8 277 9-317 25-365 (460)
271 KOG1920 IkappaB kinase complex 98.1 0.00031 6.7E-09 85.5 23.9 213 11-261 69-324 (1265)
272 KOG2321 WD40 repeat protein [G 98.1 6E-05 1.3E-09 84.9 16.7 196 19-262 143-346 (703)
273 TIGR02658 TTQ_MADH_Hv methylam 98.1 0.00031 6.8E-09 78.1 22.4 121 125-268 212-338 (352)
274 KOG2314 Translation initiation 98.1 0.0004 8.7E-09 78.2 21.7 73 14-91 214-298 (698)
275 KOG2315 Predicted translation 98.1 0.00032 7E-09 79.2 21.0 200 9-261 164-392 (566)
276 PF04762 IKI3: IKI3 family; I 98.1 0.0011 2.5E-08 82.8 28.1 276 12-319 211-519 (928)
277 PF00400 WD40: WD domain, G-be 98.1 5.9E-06 1.3E-10 61.1 4.5 30 228-257 10-39 (39)
278 KOG1064 RAVE (regulator of V-A 98.0 2.5E-05 5.3E-10 97.4 11.8 193 54-322 2208-2401(2439)
279 KOG2066 Vacuolar assembly/sort 98.0 0.0005 1.1E-08 80.6 21.3 187 55-319 40-233 (846)
280 COG5354 Uncharacterized protei 98.0 0.00032 7E-09 78.4 18.5 243 11-322 33-309 (561)
281 PF02239 Cytochrom_D1: Cytochr 98.0 0.00033 7.1E-09 79.1 18.6 197 67-324 6-207 (369)
282 KOG3914 WD repeat protein WDR4 97.9 0.00012 2.5E-09 79.8 13.2 79 228-324 150-228 (390)
283 PF00400 WD40: WD domain, G-be 97.9 2.2E-05 4.7E-10 58.0 5.2 30 53-82 10-39 (39)
284 COG4946 Uncharacterized protei 97.9 0.00082 1.8E-08 74.4 19.1 177 21-249 331-508 (668)
285 PF07433 DUF1513: Protein of u 97.9 0.00069 1.5E-08 73.1 17.7 57 15-73 55-117 (305)
286 PF07433 DUF1513: Protein of u 97.8 0.003 6.6E-08 68.3 21.5 222 12-263 6-251 (305)
287 KOG4532 WD40-like repeat conta 97.7 0.0011 2.4E-08 68.9 15.3 161 13-182 161-324 (344)
288 COG5354 Uncharacterized protei 97.7 0.0021 4.5E-08 72.1 18.4 198 10-261 173-397 (561)
289 COG4946 Uncharacterized protei 97.7 0.002 4.3E-08 71.5 17.8 198 62-323 274-481 (668)
290 PF15492 Nbas_N: Neuroblastoma 97.6 0.021 4.6E-07 60.3 23.4 237 59-331 2-275 (282)
291 PF00930 DPPIV_N: Dipeptidyl p 97.6 0.01 2.2E-07 66.8 23.0 68 11-81 43-128 (353)
292 KOG0280 Uncharacterized conser 97.5 0.0079 1.7E-07 63.5 19.1 227 32-320 47-285 (339)
293 COG0823 TolB Periplasmic compo 97.5 0.0015 3.3E-08 74.9 15.0 145 11-181 193-346 (425)
294 KOG1912 WD40 repeat protein [G 97.5 0.0066 1.4E-07 71.1 19.2 266 9-320 14-305 (1062)
295 KOG1409 Uncharacterized conser 97.4 0.0039 8.4E-08 67.0 15.6 214 11-261 25-272 (404)
296 KOG4190 Uncharacterized conser 97.4 0.00037 8.1E-09 77.9 7.9 210 54-325 735-954 (1034)
297 PF08450 SGL: SMP-30/Gluconola 97.4 0.019 4.2E-07 60.8 21.0 207 59-322 4-215 (246)
298 KOG0882 Cyclophilin-related pe 97.4 0.0012 2.5E-08 72.9 11.1 221 9-263 8-235 (558)
299 KOG1409 Uncharacterized conser 97.4 0.0034 7.5E-08 67.3 14.3 231 54-323 24-274 (404)
300 PF08450 SGL: SMP-30/Gluconola 97.4 0.081 1.8E-06 56.0 25.0 206 14-261 3-215 (246)
301 PF11768 DUF3312: Protein of u 97.2 0.0057 1.2E-07 70.3 14.4 74 228-322 258-332 (545)
302 KOG4190 Uncharacterized conser 97.1 0.0013 2.8E-08 73.8 8.4 196 20-263 745-952 (1034)
303 KOG0280 Uncharacterized conser 97.1 0.0087 1.9E-07 63.2 14.0 199 14-258 125-332 (339)
304 KOG0309 Conserved WD40 repeat- 97.1 0.0026 5.6E-08 73.9 10.5 248 13-321 70-341 (1081)
305 KOG3621 WD40 repeat-containing 97.0 0.035 7.5E-07 65.0 18.5 82 3-85 69-155 (726)
306 PF06977 SdiA-regulated: SdiA- 97.0 0.084 1.8E-06 56.2 20.2 157 11-182 22-192 (248)
307 KOG2041 WD40 repeat protein [G 97.0 0.014 2.9E-07 67.8 14.9 160 6-182 111-280 (1189)
308 KOG0309 Conserved WD40 repeat- 96.9 0.0021 4.5E-08 74.6 7.3 199 11-261 25-234 (1081)
309 KOG1920 IkappaB kinase complex 96.9 0.16 3.6E-06 62.8 23.5 218 54-321 68-324 (1265)
310 KOG1334 WD40 repeat protein [G 96.9 0.0022 4.7E-08 71.5 7.2 168 4-204 275-467 (559)
311 KOG2314 Translation initiation 96.8 0.009 1.9E-07 67.7 11.5 146 58-247 214-364 (698)
312 KOG1832 HIV-1 Vpr-binding prot 96.5 0.008 1.7E-07 71.2 9.0 193 11-269 1102-1300(1516)
313 KOG2041 WD40 repeat protein [G 96.5 0.012 2.7E-07 68.2 10.3 128 163-322 17-148 (1189)
314 KOG2695 WD40 repeat protein [G 96.5 0.0074 1.6E-07 64.9 8.0 151 122-324 228-381 (425)
315 PF14655 RAB3GAP2_N: Rab3 GTPa 96.5 1 2.3E-05 51.4 25.5 40 230-270 308-347 (415)
316 PF13360 PQQ_2: PQQ-like domai 96.5 0.23 5E-06 51.7 19.2 199 63-324 33-235 (238)
317 PF04053 Coatomer_WDAD: Coatom 96.5 0.038 8.3E-07 63.8 14.0 132 12-182 34-166 (443)
318 PRK13616 lipoprotein LpqB; Pro 96.4 0.15 3.3E-06 61.1 19.3 146 11-181 350-516 (591)
319 PRK02888 nitrous-oxide reducta 96.4 0.086 1.9E-06 62.3 16.5 196 14-260 196-405 (635)
320 KOG1832 HIV-1 Vpr-binding prot 96.4 0.0046 1E-07 73.1 6.0 191 54-322 1101-1294(1516)
321 PF06433 Me-amine-dh_H: Methyl 96.4 0.4 8.6E-06 52.9 20.3 113 11-139 36-168 (342)
322 KOG1008 Uncharacterized conser 96.3 0.0043 9.3E-08 71.4 4.6 211 54-320 56-276 (783)
323 PF00930 DPPIV_N: Dipeptidyl p 96.2 0.8 1.7E-05 51.5 22.7 70 19-93 1-80 (353)
324 PF10647 Gmad1: Lipoprotein Lp 96.2 0.18 3.9E-06 54.0 16.5 156 12-182 25-187 (253)
325 PF11768 DUF3312: Protein of u 96.2 0.016 3.5E-07 66.7 8.8 69 11-84 260-329 (545)
326 TIGR03300 assembly_YfgL outer 96.2 0.26 5.5E-06 55.7 18.8 185 67-316 191-376 (377)
327 smart00320 WD40 WD40 repeats. 96.1 0.0069 1.5E-07 42.0 3.8 30 228-257 11-40 (40)
328 KOG4714 Nucleoporin [Nuclear s 96.1 0.025 5.4E-07 58.9 9.0 154 61-261 96-256 (319)
329 KOG0882 Cyclophilin-related pe 96.1 0.059 1.3E-06 60.0 12.3 213 64-325 18-237 (558)
330 TIGR03300 assembly_YfgL outer 96.1 0.6 1.3E-05 52.8 21.3 66 240-324 278-343 (377)
331 KOG4714 Nucleoporin [Nuclear s 96.1 0.062 1.3E-06 56.1 11.4 73 230-320 180-255 (319)
332 KOG2066 Vacuolar assembly/sort 96.0 0.17 3.6E-06 60.3 16.0 140 21-186 82-229 (846)
333 PF10647 Gmad1: Lipoprotein Lp 96.0 1.5 3.3E-05 46.8 22.3 167 55-260 24-198 (253)
334 smart00320 WD40 WD40 repeats. 95.9 0.021 4.5E-07 39.5 5.5 29 54-82 12-40 (40)
335 KOG1912 WD40 repeat protein [G 95.8 0.069 1.5E-06 63.0 11.7 115 163-325 18-149 (1062)
336 PF06977 SdiA-regulated: SdiA- 95.7 2.1 4.5E-05 45.7 21.8 218 54-311 21-242 (248)
337 PRK13616 lipoprotein LpqB; Pro 95.6 0.49 1.1E-05 56.8 18.5 104 55-179 350-466 (591)
338 PF12894 Apc4_WD40: Anaphase-p 95.5 0.034 7.4E-07 43.2 5.4 35 54-88 11-45 (47)
339 KOG3617 WD40 and TPR repeat-co 95.4 0.15 3.2E-06 60.7 12.5 72 12-86 61-135 (1416)
340 COG0823 TolB Periplasmic compo 95.2 0.16 3.5E-06 58.4 12.0 147 56-250 194-346 (425)
341 KOG2280 Vacuolar assembly/sort 95.2 3.3 7.1E-05 49.6 22.3 40 387-427 437-479 (829)
342 PRK02888 nitrous-oxide reducta 95.1 0.23 5E-06 58.8 13.0 74 56-137 322-405 (635)
343 PF04053 Coatomer_WDAD: Coatom 95.0 0.22 4.8E-06 57.6 12.4 138 57-259 35-173 (443)
344 KOG4640 Anaphase-promoting com 94.8 0.12 2.6E-06 60.0 9.3 73 12-87 22-96 (665)
345 PF04841 Vps16_N: Vps16, N-ter 94.7 3.4 7.4E-05 47.5 21.1 66 59-136 33-109 (410)
346 KOG2114 Vacuolar assembly/sort 94.6 4.3 9.4E-05 49.2 21.6 199 16-263 29-247 (933)
347 KOG1275 PAB-dependent poly(A) 94.5 0.16 3.6E-06 61.0 9.8 156 64-261 185-343 (1118)
348 KOG3617 WD40 and TPR repeat-co 94.5 0.13 2.8E-06 61.2 8.7 108 59-203 20-131 (1416)
349 PF14870 PSII_BNR: Photosynthe 94.4 5.9 0.00013 43.5 21.1 243 11-322 17-263 (302)
350 KOG2695 WD40 repeat protein [G 94.4 0.091 2E-06 56.8 6.7 144 26-205 229-378 (425)
351 KOG1645 RING-finger-containing 94.3 2.9 6.2E-05 46.6 18.0 75 7-85 190-267 (463)
352 PRK11138 outer membrane biogen 94.1 6.9 0.00015 44.5 22.1 66 240-324 293-358 (394)
353 PF08596 Lgl_C: Lethal giant l 94.1 4.1 8.9E-05 46.6 19.8 120 12-136 3-173 (395)
354 KOG3621 WD40 repeat-containing 94.0 0.26 5.7E-06 57.9 9.8 128 154-320 27-155 (726)
355 COG3391 Uncharacterized conser 93.6 9.3 0.0002 43.5 21.6 203 14-262 77-286 (381)
356 PF07995 GSDH: Glucose / Sorbo 93.6 3 6.5E-05 46.5 17.3 119 57-182 4-135 (331)
357 PF06433 Me-amine-dh_H: Methyl 93.2 6.6 0.00014 43.5 18.5 208 13-263 97-324 (342)
358 KOG4640 Anaphase-promoting com 93.2 0.39 8.4E-06 55.9 9.4 78 161-267 21-99 (665)
359 COG3391 Uncharacterized conser 93.2 19 0.00041 41.0 24.4 242 12-324 32-288 (381)
360 PRK11138 outer membrane biogen 93.2 8 0.00017 44.0 20.4 59 241-318 335-393 (394)
361 PF14783 BBS2_Mid: Ciliary BBS 93.1 3.5 7.5E-05 38.2 13.8 84 13-109 2-90 (111)
362 PF07995 GSDH: Glucose / Sorbo 93.0 18 0.00038 40.4 24.1 62 11-73 2-71 (331)
363 KOG2377 Uncharacterized conser 92.7 2.5 5.3E-05 47.8 14.4 144 14-179 26-172 (657)
364 PRK13684 Ycf48-like protein; P 92.4 4.8 0.0001 44.9 16.8 151 10-182 172-323 (334)
365 TIGR02604 Piru_Ver_Nterm putat 92.3 2.6 5.7E-05 47.6 14.8 74 10-85 13-100 (367)
366 PLN00033 photosystem II stabil 92.3 6.4 0.00014 45.0 17.7 140 13-182 241-391 (398)
367 PF14870 PSII_BNR: Photosynthe 92.2 2.7 5.9E-05 46.1 14.0 148 11-182 145-296 (302)
368 PF13360 PQQ_2: PQQ-like domai 92.0 6.9 0.00015 40.5 16.6 198 19-263 33-234 (238)
369 PF03178 CPSF_A: CPSF A subuni 91.7 5.7 0.00012 43.8 16.4 140 128-320 62-203 (321)
370 PF10313 DUF2415: Uncharacteri 91.3 0.48 1E-05 35.9 4.8 30 55-84 1-33 (43)
371 KOG1645 RING-finger-containing 90.9 0.49 1.1E-05 52.3 6.4 76 228-323 192-270 (463)
372 PF12657 TFIIIC_delta: Transcr 90.8 1.2 2.6E-05 44.8 8.9 73 13-86 7-123 (173)
373 PF12894 Apc4_WD40: Anaphase-p 89.9 0.66 1.4E-05 36.0 4.7 31 230-260 12-42 (47)
374 KOG1275 PAB-dependent poly(A) 89.2 3 6.4E-05 50.8 11.5 147 20-202 185-341 (1118)
375 COG3204 Uncharacterized protei 88.9 37 0.00081 36.8 18.3 160 11-182 86-254 (316)
376 COG3386 Gluconolactonase [Carb 88.7 9.8 0.00021 42.0 14.6 79 161-259 111-193 (307)
377 PF08553 VID27: VID27 cytoplas 88.4 21 0.00045 44.3 18.3 70 230-319 578-647 (794)
378 KOG2444 WD40 repeat protein [G 88.2 1 2.2E-05 46.7 6.0 108 66-207 70-181 (238)
379 PF02897 Peptidase_S9_N: Proly 87.9 4.8 0.0001 46.1 12.3 122 162-321 125-262 (414)
380 PF08728 CRT10: CRT10; InterP 87.4 18 0.0004 44.0 16.7 75 161-259 164-246 (717)
381 TIGR03606 non_repeat_PQQ dehyd 87.0 34 0.00073 39.9 18.1 57 10-66 29-90 (454)
382 KOG2079 Vacuolar assembly/sort 87.0 1.8 4E-05 53.5 8.1 98 65-180 98-195 (1206)
383 PRK10115 protease 2; Provision 86.7 90 0.0019 38.5 25.9 68 12-84 128-207 (686)
384 KOG2079 Vacuolar assembly/sort 86.5 2.1 4.6E-05 52.9 8.3 73 228-318 129-202 (1206)
385 PF12234 Rav1p_C: RAVE protein 85.8 7.9 0.00017 46.6 12.5 96 196-317 52-154 (631)
386 PF02897 Peptidase_S9_N: Proly 85.4 73 0.0016 36.3 26.2 68 13-84 126-210 (414)
387 KOG1008 Uncharacterized conser 85.2 0.39 8.5E-06 55.9 1.4 168 7-204 99-276 (783)
388 PF14783 BBS2_Mid: Ciliary BBS 84.7 16 0.00035 33.8 11.3 64 57-134 2-69 (111)
389 TIGR02604 Piru_Ver_Nterm putat 84.6 21 0.00044 40.4 14.9 19 162-180 125-143 (367)
390 PLN00033 photosystem II stabil 84.5 18 0.00039 41.4 14.3 112 11-133 281-396 (398)
391 PF15390 DUF4613: Domain of un 84.3 71 0.0015 37.9 18.6 193 56-308 21-220 (671)
392 PF03178 CPSF_A: CPSF A subuni 84.1 26 0.00057 38.6 15.3 177 32-260 3-203 (321)
393 TIGR03606 non_repeat_PQQ dehyd 83.9 13 0.00028 43.3 12.8 56 56-111 31-90 (454)
394 PF07676 PD40: WD40-like Beta 83.6 2.1 4.6E-05 31.3 4.3 26 56-81 10-38 (39)
395 PF05694 SBP56: 56kDa selenium 83.6 62 0.0013 37.2 17.5 213 15-247 134-391 (461)
396 PRK13684 Ycf48-like protein; P 83.5 80 0.0017 35.2 24.8 76 230-322 215-290 (334)
397 PF10168 Nup88: Nuclear pore c 83.5 6 0.00013 48.7 10.5 74 11-84 85-179 (717)
398 PF10313 DUF2415: Uncharacteri 82.0 2.6 5.6E-05 32.1 4.1 30 231-260 2-34 (43)
399 PF13449 Phytase-like: Esteras 81.1 44 0.00096 37.1 15.6 57 56-112 86-159 (326)
400 PF14583 Pectate_lyase22: Olig 80.8 56 0.0012 37.0 15.9 27 233-259 354-381 (386)
401 PF08553 VID27: VID27 cytoplas 80.0 23 0.0005 43.8 13.6 52 118-182 588-639 (794)
402 PF14583 Pectate_lyase22: Olig 79.4 1.2E+02 0.0026 34.5 20.4 68 17-87 42-113 (386)
403 KOG4649 PQQ (pyrrolo-quinoline 79.0 96 0.0021 33.2 20.3 27 60-86 99-125 (354)
404 PF08596 Lgl_C: Lethal giant l 78.3 34 0.00074 39.1 13.7 210 9-259 85-335 (395)
405 KOG2377 Uncharacterized conser 77.1 23 0.00049 40.4 11.2 118 163-322 25-143 (657)
406 PF12657 TFIIIC_delta: Transcr 76.2 13 0.00027 37.3 8.5 32 230-261 86-123 (173)
407 COG3204 Uncharacterized protei 75.4 1.3E+02 0.0028 32.8 19.7 172 54-261 85-265 (316)
408 PF10168 Nup88: Nuclear pore c 74.9 11 0.00024 46.4 9.1 87 162-263 86-183 (717)
409 PF12234 Rav1p_C: RAVE protein 73.7 36 0.00078 41.1 12.6 67 12-82 31-102 (631)
410 KOG3630 Nuclear pore complex, 73.2 9 0.00019 48.0 7.5 52 56-107 200-251 (1405)
411 COG3490 Uncharacterized protei 72.6 8.6 0.00019 41.3 6.3 61 168-249 121-181 (366)
412 PF07676 PD40: WD40-like Beta 72.5 6.5 0.00014 28.7 4.0 18 12-29 10-27 (39)
413 PF07250 Glyoxal_oxid_N: Glyox 72.4 42 0.0009 35.7 11.5 79 162-258 68-147 (243)
414 KOG1916 Nuclear protein, conta 71.9 2 4.3E-05 52.2 1.6 22 168-189 243-264 (1283)
415 COG3490 Uncharacterized protei 70.9 35 0.00076 36.9 10.3 108 164-314 71-184 (366)
416 PF07569 Hira: TUP1-like enhan 69.2 20 0.00044 37.5 8.3 80 235-322 16-98 (219)
417 PF14655 RAB3GAP2_N: Rab3 GTPa 68.5 30 0.00064 39.8 10.0 39 55-93 308-346 (415)
418 KOG2395 Protein involved in va 67.4 71 0.0015 37.4 12.4 67 234-320 435-501 (644)
419 COG3386 Gluconolactonase [Carb 66.8 31 0.00067 38.1 9.5 82 11-92 163-251 (307)
420 PRK13615 lipoprotein LpqB; Pro 62.8 3.4E+02 0.0073 32.7 20.9 29 58-86 337-365 (557)
421 TIGR03118 PEPCTERM_chp_1 conse 62.5 2.5E+02 0.0054 31.0 19.5 83 58-140 26-122 (336)
422 KOG1900 Nuclear pore complex, 61.7 1.2E+02 0.0026 39.2 14.1 169 74-261 97-274 (1311)
423 KOG4460 Nuclear pore complex, 61.2 53 0.0011 38.3 10.0 80 12-91 105-206 (741)
424 KOG2444 WD40 repeat protein [G 61.1 21 0.00046 37.3 6.3 17 120-136 72-88 (238)
425 cd00216 PQQ_DH Dehydrogenases 60.9 2.7E+02 0.0059 32.7 16.7 26 67-92 111-137 (488)
426 PF14517 Tachylectin: Tachylec 60.4 1.4E+02 0.0031 31.4 12.3 151 12-177 35-194 (229)
427 COG5290 IkappaB kinase complex 59.9 2.1E+02 0.0045 35.3 14.7 31 54-84 112-142 (1243)
428 TIGR03118 PEPCTERM_chp_1 conse 58.5 2.9E+02 0.0063 30.5 19.8 74 11-84 23-118 (336)
429 KOG2395 Protein involved in va 58.1 84 0.0018 36.8 10.9 111 13-135 378-499 (644)
430 PF15390 DUF4613: Domain of un 57.6 62 0.0014 38.3 9.9 69 17-87 119-189 (671)
431 TIGR02608 delta_60_rpt delta-6 56.4 39 0.00084 27.3 5.8 18 12-29 2-19 (55)
432 PF08625 Utp13: Utp13 specific 56.4 51 0.0011 32.0 7.9 85 393-477 3-97 (141)
433 KOG4460 Nuclear pore complex, 55.5 39 0.00084 39.3 7.7 87 162-263 105-202 (741)
434 PF10214 Rrn6: RNA polymerase 53.2 3.5E+02 0.0077 33.9 16.6 162 158-341 77-268 (765)
435 cd00216 PQQ_DH Dehydrogenases 53.0 4.4E+02 0.0096 31.0 19.8 28 240-268 405-432 (488)
436 KOG1916 Nuclear protein, conta 52.5 44 0.00095 41.3 7.9 27 61-87 242-270 (1283)
437 PRK10115 protease 2; Provision 50.9 5.7E+02 0.012 31.6 23.8 30 56-85 128-162 (686)
438 COG4590 ABC-type uncharacteriz 46.8 48 0.001 37.9 6.7 146 11-177 221-374 (733)
439 COG2133 Glucose/sorbosone dehy 46.3 2.6E+02 0.0056 32.1 12.6 28 56-83 68-95 (399)
440 COG1506 DAP2 Dipeptidyl aminop 45.6 3.3E+02 0.0071 33.2 14.4 56 11-72 60-118 (620)
441 PF05131 Pep3_Vps18: Pep3/Vps1 45.2 84 0.0018 30.7 7.5 104 293-424 36-140 (147)
442 KOG4659 Uncharacterized conser 44.2 2.4E+02 0.0051 36.8 12.3 27 228-256 660-686 (1899)
443 PF11715 Nup160: Nucleoporin N 43.9 62 0.0013 38.6 7.8 33 56-88 216-252 (547)
444 PF11635 Med16: Mediator compl 42.3 7.9E+02 0.017 30.8 21.3 76 161-254 260-345 (753)
445 PF14761 HPS3_N: Hermansky-Pud 41.8 82 0.0018 32.8 7.0 60 15-76 22-81 (215)
446 PRK13615 lipoprotein LpqB; Pro 41.7 1.3E+02 0.0028 36.2 9.6 76 11-87 417-505 (557)
447 PF11715 Nup160: Nucleoporin N 40.5 31 0.00068 41.1 4.5 34 230-263 215-252 (547)
448 PF13449 Phytase-like: Esteras 39.8 5.6E+02 0.012 28.3 16.4 91 161-259 147-249 (326)
449 KOG2280 Vacuolar assembly/sort 38.7 8.5E+02 0.019 30.2 16.9 71 58-140 36-116 (829)
450 KOG2034 Vacuolar sorting prote 38.4 8.3E+02 0.018 30.8 15.6 88 311-424 306-395 (911)
451 PRK13613 lipoprotein LpqB; Pro 38.4 1.4E+02 0.003 36.2 9.4 75 12-87 456-542 (599)
452 COG4246 Uncharacterized protei 36.7 4.8E+02 0.01 28.1 11.6 75 10-85 73-164 (340)
453 TIGR00872 gnd_rel 6-phosphoglu 36.4 1.2E+02 0.0025 33.2 7.9 70 401-471 183-271 (298)
454 PF13817 DDE_Tnp_IS66_C: IS66 36.2 26 0.00057 26.1 1.8 30 553-583 9-38 (39)
455 TIGR02276 beta_rpt_yvtn 40-res 35.8 87 0.0019 22.6 4.7 24 239-262 1-25 (42)
456 PF05935 Arylsulfotrans: Aryls 34.9 2.8E+02 0.0061 32.6 11.2 37 56-92 272-310 (477)
457 PRK13614 lipoprotein LpqB; Pro 34.0 9E+02 0.02 29.2 15.1 147 12-178 344-503 (573)
458 PF08728 CRT10: CRT10; InterP 33.3 1.2E+02 0.0025 37.4 7.6 72 11-83 164-245 (717)
459 PHA02713 hypothetical protein; 33.2 9.2E+02 0.02 28.9 16.7 28 232-261 506-535 (557)
460 PRK13614 lipoprotein LpqB; Pro 33.0 9.5E+02 0.021 29.0 17.5 79 162-259 435-518 (573)
461 PF01731 Arylesterase: Arylest 30.7 81 0.0018 27.9 4.3 29 11-39 54-84 (86)
462 KOG4441 Proteins containing BT 30.4 1E+03 0.023 28.6 19.3 22 240-261 475-501 (571)
463 KOG3630 Nuclear pore complex, 30.1 1.6E+02 0.0034 37.8 7.9 110 56-183 102-221 (1405)
464 PF01436 NHL: NHL repeat; Int 29.8 85 0.0019 21.2 3.4 24 58-81 5-28 (28)
465 PF08344 TRP_2: Transient rece 29.6 1.2E+02 0.0025 25.3 4.7 37 500-540 15-51 (63)
466 PF07569 Hira: TUP1-like enhan 29.4 3E+02 0.0065 28.7 9.1 69 15-84 15-95 (219)
467 COG4590 ABC-type uncharacteriz 28.2 5.4E+02 0.012 29.9 11.0 30 231-261 359-388 (733)
468 PF10584 Proteasome_A_N: Prote 27.8 24 0.00051 23.2 0.3 8 236-243 7-14 (23)
469 PF13838 Clathrin_H_link: Clat 27.3 66 0.0014 27.0 3.0 23 391-413 10-32 (66)
470 COG5167 VID27 Protein involved 27.2 5E+02 0.011 30.6 10.7 63 240-321 572-634 (776)
471 COG1770 PtrB Protease II [Amin 26.9 1.4E+02 0.003 36.2 6.5 59 12-76 130-195 (682)
472 TIGR02608 delta_60_rpt delta-6 26.4 1.2E+02 0.0026 24.4 4.2 19 231-249 2-20 (55)
473 PF00780 CNH: CNH domain; Int 26.0 7.9E+02 0.017 25.8 24.4 60 20-84 5-64 (275)
474 PF01731 Arylesterase: Arylest 25.7 1.1E+02 0.0024 27.0 4.3 27 233-259 57-84 (86)
475 PRK13613 lipoprotein LpqB; Pro 24.3 1.3E+03 0.029 27.9 20.4 28 56-83 364-392 (599)
476 KOG3616 Selective LIM binding 24.0 1.2E+02 0.0025 36.9 5.2 31 55-85 15-45 (1636)
477 KOG2247 WD40 repeat-containing 23.3 21 0.00046 41.1 -0.8 111 162-317 76-186 (615)
478 PF11115 DUF2623: Protein of u 23.3 61 0.0013 28.8 2.1 18 405-422 56-73 (95)
479 PF01453 B_lectin: D-mannose b 22.1 3.2E+02 0.007 25.2 7.0 58 14-84 21-79 (114)
480 KOG4659 Uncharacterized conser 20.9 2.5E+02 0.0055 36.5 7.4 79 233-320 596-690 (1899)
481 PF00780 CNH: CNH domain; Int 20.7 9.9E+02 0.021 25.0 19.3 119 11-141 36-170 (275)
482 smart00564 PQQ beta-propeller 20.4 1.3E+02 0.0029 20.5 3.1 25 300-324 5-29 (33)
483 PF14833 NAD_binding_11: NAD-b 20.4 92 0.002 29.0 3.0 22 403-424 21-42 (122)
484 KOG2100 Dipeptidyl aminopeptid 20.2 6.8E+02 0.015 31.4 11.2 107 59-180 58-167 (755)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.4e-38 Score=329.89 Aligned_cols=280 Identities=19% Similarity=0.274 Sum_probs=215.2
Q ss_pred cccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-
Q 003087 7 PRKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN- 84 (849)
Q Consensus 7 ~~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~- 84 (849)
|.+-+.|.+++|||||+.||+|| |.++++||.... .|..++.. |...|.+|+|||||+.||||+.||+|++||..
T Consensus 112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te--Tp~~t~Kg-H~~WVlcvawsPDgk~iASG~~dg~I~lwdpkt 188 (480)
T KOG0271|consen 112 AGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE--TPLFTCKG-HKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKT 188 (480)
T ss_pred CCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC--CcceeecC-CccEEEEEEECCCcchhhccccCCeEEEecCCC
Confidence 45668999999999999999998 568999998753 44444432 24567899999999999999999999999985
Q ss_pred CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceE
Q 003087 85 GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVI 164 (849)
Q Consensus 85 g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~ 164 (849)
|+++.+-.++| ...|.+++|.|-.....+. .|++.+.||++++||+..+.+... +. +|+..|+
T Consensus 189 g~~~g~~l~gH---~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~~~-----------ls-gHT~~VT 251 (480)
T KOG0271|consen 189 GQQIGRALRGH---KKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCVRT-----------LS-GHTASVT 251 (480)
T ss_pred CCcccccccCc---ccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEEEE-----------ec-cCccceE
Confidence 76655554444 3579999999855443332 578889999999999987766432 34 5577899
Q ss_pred EEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCC---------------------------------------
Q 003087 165 CTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHN--------------------------------------- 205 (849)
Q Consensus 165 svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~--------------------------------------- 205 (849)
||.|--+| ++++||-|+| |++|+...+
T Consensus 252 CvrwGG~g-liySgS~Drt-------------Ikvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~ 317 (480)
T KOG0271|consen 252 CVRWGGEG-LIYSGSQDRT-------------IKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSF 317 (480)
T ss_pred EEEEcCCc-eEEecCCCce-------------EEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCCh
Confidence 99999888 7889999986 555554331
Q ss_pred ----------------cCcccceeccccce-e-----------eccCCCccccccceEEEccCCCEEEEEeCCCcEEEEe
Q 003087 206 ----------------LELEQLYTTQIEGL-Y-----------CEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFE 257 (849)
Q Consensus 206 ----------------~~~~~l~~~~~~~~-~-----------~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd 257 (849)
...+.+.++.-+.+ | .+-.| |+.-|+.|+|||||+++||+|+|.+|+||+
T Consensus 318 se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtg--Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~ 395 (480)
T KOG0271|consen 318 SEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTG--HQALVNHVSFSPDGRYIASASFDKSVKLWD 395 (480)
T ss_pred HHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhc--hhhheeeEEECCCccEEEEeecccceeeee
Confidence 00011221111111 1 12235 999999999999999999999999999999
Q ss_pred cCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEE-EEEEeCCcEEEEEecCCccccccCCCCCCeEE
Q 003087 258 MDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNIL-ILARKSSIITMIDVLSGLKVKETDPKLRGHVF 336 (849)
Q Consensus 258 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~l-a~a~~dgti~lwdl~~~~~l~~~~~~~~g~~~ 336 (849)
..+++. +..|. +|.+.|+.|+|+.|.+| ++++.|.|++||++.+.+ +.-+.|+|.+++|
T Consensus 396 g~tGk~-lasfR------------------GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK-l~~DLpGh~DEVf 455 (480)
T KOG0271|consen 396 GRTGKF-LASFR------------------GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK-LKQDLPGHADEVF 455 (480)
T ss_pred CCCcch-hhhhh------------------hccceeEEEEeccCccEEEEcCCCceEEEEEeeeee-ecccCCCCCceEE
Confidence 999876 56665 46678999999999985 578999999999999866 6567999999999
Q ss_pred EEEecc
Q 003087 337 LLESKS 342 (849)
Q Consensus 337 ~Le~~~ 342 (849)
.++..+
T Consensus 456 ~vDwsp 461 (480)
T KOG0271|consen 456 AVDWSP 461 (480)
T ss_pred EEEecC
Confidence 999976
No 2
>PF08314 Sec39: Secretory pathway protein Sec39; InterPro: IPR013244 Sec39 was originally identified as a protein involved in ER-Golgi transport in a large scale promoter shut down analysis of essential yeast genes []. A subsequent study found that Sec39p (Dsl3p) is required for Golgi-ER retrograde transport and is part of a very stable protein complex that also includes Dsl1p (in mammals ZW10), Tip20p (Rint-1) and the ER localized Q-SNARE proteins Ufe1p (syntaxin-18), Sec20p and Use1p []. This was confirmed in a genome-wide analysis of protein complexes []. ; PDB: 3K8P_D.
Probab=100.00 E-value=2.7e-37 Score=374.06 Aligned_cols=298 Identities=31% Similarity=0.387 Sum_probs=148.9
Q ss_pred HHHHHHHHHHcCCcchHHHHHHHCCCCccHHH-H-HHHhhCCCCCCcccccccCCCCCCCCCc---cCccccchhhhhhh
Q 003087 530 IHEAGVNLAESGKIGALNLLFKRHPYSLASSV-L-QILAAIPETVPVQTYTQLLPGRSPPMTV---AMREEDWVECDKMV 604 (849)
Q Consensus 530 lv~~A~~~A~~g~i~aL~~L~~rh~~~l~p~~-l-~ILs~lPEt~~P~~Y~~LLP~~~~~~~~---~~r~~Dw~e~~~~~ 604 (849)
|+++|++||++||++||++||+||+..+.||+ | +||+++|||++|++|..|||+++.+... ..+..||+|..+..
T Consensus 1 LvLlA~~~A~~~di~aL~~L~~~~~~~l~~~~~L~iILs~lPEt~~P~~Y~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (715)
T PF08314_consen 1 LVLLAVHLASSGDIKALEILFTRHGASLLPERLLRIILSYLPETLDPSEYVFLLPELDNGSSPELDEDRDVDWCEEDESD 80 (715)
T ss_dssp --------------------------SHH---HHHHHHHHS-TTS-GGGGGHHHHHHH----------------------
T ss_pred CHHHHHHHHHhcCHHHHHHHHHHccccchHHHHHHHHHHhCcCCCCHHHHHHHhhhhccCCCccchhhhhhhcccccccc
Confidence 58899999999999999999999999999994 6 5999999999999999999988765432 35677887644433
Q ss_pred -HHhhcCCCccccccccccchhhhccc-----CCCCCChHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHcCChhHHH
Q 003087 605 -RFIRRLPENHEISDQIRTEPIVRRSL-----RSLWPSINELTIWYKSRARDIDCYSGQLDNCLCLIDFACRKGLTELQQ 678 (849)
Q Consensus 605 -~~i~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~l~~Wy~~RA~~ID~~sG~~~~al~Ll~~~~~~g~~~L~~ 678 (849)
+.+..+++.. ..+..+...+++... +..+++.+.|++||++||++||.++|+++++++||.+|+++ ++.|++
T Consensus 81 ~~~v~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~d~L~~w~~~Ra~~Id~~sg~l~~~l~LL~~~~e~-~~~l~~ 158 (715)
T PF08314_consen 81 ISIVESLSDEV-AEKYVRKLELLPLRSPDLPDGSSIPSDDLLTSWYRARAYRIDEESGLLDNALELLWPFLEH-SPELRQ 158 (715)
T ss_dssp ----------------GGGHHHHHHHTTT-----------SHHHHHHHHHHHHHTT-TT-TTTTHHHHHT--S--HHHHH
T ss_pred cccccccccHH-HHHHHhcccccccCCcchhhccccCChHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHhhc-ChhHHH
Confidence 2333333322 234444444444222 12345789999999999999999999999999999999994 999999
Q ss_pred HHH-hHHHHHHhhcccCCCCccccccchHHHhcCChHHHHHHhhCCCCchh---HHHHhhhcccccccccccccc--ccc
Q 003087 679 FHE-DTSYLYQLIYSDETDGEISFSMSLTAWEQLSDYEKFNTMLKGVKEEN---VIKRLRDKAIPFMQSRSHYLT--SVG 752 (849)
Q Consensus 679 l~~-~l~~L~~lvye~~~~~~~~~~lsL~~~e~l~~~~~~~~lL~~~~~~~---v~~dl~~~v~P~l~~~~~~~~--~~~ 752 (849)
|+. .++||.+++|+||++. +..+||.+|++|++.++|++||+++++++ +++||+++|+|||+++.++.. +..
T Consensus 159 W~~s~llPL~rln~~y~~~~--~~~~sL~efe~ls~~~~~~lLLs~~~~~~~~~v~~dl~~lv~P~L~~~~~~~~~~~~~ 236 (715)
T PF08314_consen 159 WLISILLPLLRLNYEYYPDQ--DSSLSLEEFESLSDREAFKLLLSPSGSDSSDDVVRDLRGLVIPYLYYKNRWKRRLFNW 236 (715)
T ss_dssp HHHHTHHHHHHHHHHT------T----HHHHHHS-HHHHHHHH-------------HHHHHTHHHHHHHHT-HHH--HHH
T ss_pred HHHccchhHHHhcccccccC--CCCCcHHHHHhCCHHHHHHHHHccCCccccccHHHHHHHHHHHHHcccccCcchhhHh
Confidence 996 7999999999999885 47899999999999999999999998887 999999999999999654221 111
Q ss_pred cccccccccCCCccCChH--HHHHHHHHHhhhcchHHHHHHHHhc-CccccCCCccCCHHHHHHHHHHHhhcCCCC--Ch
Q 003087 753 QEHVMVDQSSADHEKDES--FLVRWLKKIALENKVEICLLVIEEG-CTEFQSKGFFRDESEAIDCALQCIYLCTAT--DK 827 (849)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~--~l~~wl~~~a~~~~l~~~~~~~e~s-~~d~~~~~~~~~~~~~~~~aLaciY~~~~~--~~ 827 (849)
. ..+...... ..++ .+.+||.+.+.. ++..++.+|++| +|. ..++.++|+++||||||.|+++ ++
T Consensus 237 ~---~~~~~~~~~-~~~~~~~v~~~l~~~~~~-~~~~~~~a~~~w~gp~-----d~~~~~~~~~~aLa~iY~~~~~~~~~ 306 (715)
T PF08314_consen 237 L---FRNYSVFLL-KSNENYEVFEWLLSHSKP-DWLDAVEAVEQWDGPE-----DVKDEDDYARAALACIYLCSESSLEQ 306 (715)
T ss_dssp H---HSSTTT-----SHHHHHHHHHHHHHHHH-T------------------------HHHHHHHHHHHHHHHHHHHHTS
T ss_pred h---hcccchhhc-cccchHHHHHHHHHHhcc-chhhhHHhhhhchhhh-----hhhHHHHHHHHHHHHhhcCCCCCHHH
Confidence 0 001111111 1222 289999999975 788888888885 541 1277889999999999999965 59
Q ss_pred HHHHHHHHhcCCCC
Q 003087 828 WSTMAAILSKLPQK 841 (849)
Q Consensus 828 ~~~~~~Il~~lp~~ 841 (849)
|++|++|++|+|..
T Consensus 307 l~~~~~I~e~l~~l 320 (715)
T PF08314_consen 307 LSGAYRILECLPQL 320 (715)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999863
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.3e-32 Score=291.84 Aligned_cols=262 Identities=11% Similarity=0.092 Sum_probs=210.0
Q ss_pred ccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCC--CCEEEEEeCCCcEEEEecC
Q 003087 8 RKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSES--HDVLGIVDDTHTVYFFKAN 84 (849)
Q Consensus 8 ~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPD--G~~LAs~~~dgtIrlWd~~ 84 (849)
.-.++|..++||+||+.||+|| +|.+++|+..+- ..+.++.. |.+.+.++.|+|. +.-||||+.||+|++|+++
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~--~~~~~l~g-H~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC--NLLQTLRG-HTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCc--ceeEEEec-cccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 3347899999999999999999 799999996542 33334432 3778999999997 7799999999999999998
Q ss_pred C-ccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCce
Q 003087 85 G-EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNV 163 (849)
Q Consensus 85 g-~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V 163 (849)
+ ..+..+.+|. ..|..|+|.|++...++ +++|.+-|+||+.++...-.++ +|..+|
T Consensus 250 ~e~~l~~l~gH~----~RVs~VafHPsG~~L~T-------asfD~tWRlWD~~tk~ElL~QE------------GHs~~v 306 (459)
T KOG0272|consen 250 QETPLQDLEGHL----ARVSRVAFHPSGKFLGT-------ASFDSTWRLWDLETKSELLLQE------------GHSKGV 306 (459)
T ss_pred CCcchhhhhcch----hhheeeeecCCCceeee-------cccccchhhcccccchhhHhhc------------cccccc
Confidence 7 5666776543 46889999998776554 4899999999999877654444 567789
Q ss_pred EEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCE
Q 003087 164 ICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKF 243 (849)
Q Consensus 164 ~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~ 243 (849)
.+++|+|||.++++||.|.+ =++||+.++.. + ..+.| |.+.|.+|+|||+|..
T Consensus 307 ~~iaf~~DGSL~~tGGlD~~-------------~RvWDlRtgr~---i---------m~L~g--H~k~I~~V~fsPNGy~ 359 (459)
T KOG0272|consen 307 FSIAFQPDGSLAATGGLDSL-------------GRVWDLRTGRC---I---------MFLAG--HIKEILSVAFSPNGYH 359 (459)
T ss_pred ceeEecCCCceeeccCccch-------------hheeecccCcE---E---------EEecc--cccceeeEeECCCceE
Confidence 99999999999999999974 38999987631 1 12345 8999999999999999
Q ss_pred EEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecC-C-EEEEEEeCCcEEEEEecCC
Q 003087 244 VATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSD-N-ILILARKSSIITMIDVLSG 321 (849)
Q Consensus 244 LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D-~-~la~a~~dgti~lwdl~~~ 321 (849)
|||+|.|++++|||+...+. +.+.+ .|.+-|..|.|+|+ | .|++++.|++++||+-.+.
T Consensus 360 lATgs~Dnt~kVWDLR~r~~-ly~ip------------------AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~ 420 (459)
T KOG0272|consen 360 LATGSSDNTCKVWDLRMRSE-LYTIP------------------AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW 420 (459)
T ss_pred EeecCCCCcEEEeeeccccc-ceecc------------------cccchhhheEecccCCeEEEEcccCcceeeecCCCc
Confidence 99999999999999987654 44443 46678999999994 4 4789999999999998887
Q ss_pred ccccccCCCCCCeEEEEEecc
Q 003087 322 LKVKETDPKLRGHVFLLESKS 342 (849)
Q Consensus 322 ~~l~~~~~~~~g~~~~Le~~~ 342 (849)
+.+. ...+|+++|+.|+-..
T Consensus 421 ~~~k-sLaGHe~kV~s~Dis~ 440 (459)
T KOG0272|consen 421 SPLK-SLAGHEGKVISLDISP 440 (459)
T ss_pred ccch-hhcCCccceEEEEecc
Confidence 7332 3446899999887754
No 4
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.98 E-value=8.3e-31 Score=269.22 Aligned_cols=258 Identities=19% Similarity=0.276 Sum_probs=205.7
Q ss_pred EEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeee-ecC-CCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccceec
Q 003087 14 VSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFN-CTG-LGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRF 91 (849)
Q Consensus 14 ~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~-~~~-~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~l 91 (849)
|.++.++||+.||+..|++|+|+...|++...+++++ +++ .++++.|+|||||++||.+.+.|+|+|+|++|.+++.+
T Consensus 1 W~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 1 WHLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred CceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence 4688999999999999999999999999999889988 455 78999999999999999999999999999999999999
Q ss_pred cccc---ccccccEEEEEecC-CcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEE
Q 003087 92 TNKH---LKVSLPIIGLIAQD-ETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTD 167 (849)
Q Consensus 92 ~~~~---~~~~~~V~~l~fs~-~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sva 167 (849)
.+.. ++.+.+|.+|+|.+ ...+.|++ +|.+++++|.++.+.++.+..+.+.+ .|.++|..+++.+|+++.
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~--ELlvi~Y~G~L~Sy~vs~gt~q~y~e----~hsfsf~~~yp~Gi~~~v 154 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSY--ELLVINYRGQLRSYLVSVGTNQGYQE----NHSFSFSSHYPHGINSAV 154 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccce--eEEEEeccceeeeEEEEcccCCccee----eEEEEecccCCCceeEEE
Confidence 8754 34557899999965 55566766 69999999999999998777766766 778999999999999999
Q ss_pred EcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCc-Cccc-------ce-eccccc--------eeeccCCCcccc
Q 003087 168 YHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNL-ELEQ-------LY-TTQIEG--------LYCEPKGHEVQL 230 (849)
Q Consensus 168 fsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~-~~~~-------l~-~~~~~~--------~~~~~~g~~h~~ 230 (849)
|+|.+++|++||+..+.+ ..+.+..|+++.||+.+.. ...+ +. ..+..+ ++++... .++
T Consensus 155 y~p~h~LLlVgG~~~~~~--~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~--~~d 230 (282)
T PF15492_consen 155 YHPKHRLLLVGGCEQNQD--GMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQ--EQD 230 (282)
T ss_pred EcCCCCEEEEeccCCCCC--ccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeecccc--CCC
Confidence 999999999999886421 1233445679999986642 1111 11 111112 2232233 578
Q ss_pred ccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCC
Q 003087 231 AHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDG 285 (849)
Q Consensus 231 ~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 285 (849)
.|++|++||||++||+.+.+|+|.||++++.+. +..| .++++|++|+++|+
T Consensus 231 ~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~-~~~W---~~~eqPg~~e~np~ 281 (282)
T PF15492_consen 231 GIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL-QRSW---KQDEQPGYNEINPD 281 (282)
T ss_pred ceEEEEECCCCCEEEEEEcCCeEEEEecCcchh-hccc---chhhCCCCccCCCC
Confidence 999999999999999999999999999998644 3444 56677788888875
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.9e-31 Score=279.38 Aligned_cols=250 Identities=10% Similarity=0.128 Sum_probs=189.9
Q ss_pred cccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEEC-----CCCCEEEEEeCCCcEEE
Q 003087 7 PRKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWS-----ESHDVLGIVDDTHTVYF 80 (849)
Q Consensus 7 ~~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafS-----PDG~~LAs~~~dgtIrl 80 (849)
+.+..+|.+|+|||||+.||+|+ +|+|.+|+...+ .+.|.-...|...|++++|- |.+++|||++.||+|||
T Consensus 154 KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg--~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrI 231 (480)
T KOG0271|consen 154 KGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTG--QQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRI 231 (480)
T ss_pred cCCccEEEEEEECCCcchhhccccCCeEEEecCCCC--CcccccccCcccceeEEeecccccCCCccceecccCCCCEEE
Confidence 45679999999999999999998 899999996643 34443323346788999995 58999999999999999
Q ss_pred EecC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCccccc--------------
Q 003087 81 FKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISS-------------- 145 (849)
Q Consensus 81 Wd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~-------------- 145 (849)
||+. |.++..+.+|. .+|.+|.+ .+++.+++.+.|++|++|+...|.+...+.
T Consensus 232 Wd~~~~~~~~~lsgHT----~~VTCvrw--------GG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTd 299 (480)
T KOG0271|consen 232 WDTKLGTCVRTLSGHT----ASVTCVRW--------GGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTD 299 (480)
T ss_pred EEccCceEEEEeccCc----cceEEEEE--------cCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccch
Confidence 9998 55666665543 46888774 444567888999999999987654311111
Q ss_pred -------------c-------------------------cccC---------------Cc-ceeccccCCceEEEEEcCC
Q 003087 146 -------------A-------------------------SASS---------------SG-LTLRRQFPQNVICTDYHPE 171 (849)
Q Consensus 146 -------------~-------------------------~~~~---------------~~-~~l~~~~~~~V~svafsPd 171 (849)
. ..++ ++ ..+. +|..-|+.|.||||
T Consensus 300 y~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmt-gHq~lVn~V~fSPd 378 (480)
T KOG0271|consen 300 YVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMT-GHQALVNHVSFSPD 378 (480)
T ss_pred hhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhh-chhhheeeEEECCC
Confidence 0 0000 00 0233 34557999999999
Q ss_pred CceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCC
Q 003087 172 LSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNG 251 (849)
Q Consensus 172 g~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dg 251 (849)
|+++|+||.|+ .|+||+..++. ++..++| |-..|+.|+||.|.++|+|+|.|.
T Consensus 379 ~r~IASaSFDk-------------SVkLW~g~tGk------------~lasfRG--Hv~~VYqvawsaDsRLlVS~SkDs 431 (480)
T KOG0271|consen 379 GRYIASASFDK-------------SVKLWDGRTGK------------FLASFRG--HVAAVYQVAWSADSRLLVSGSKDS 431 (480)
T ss_pred ccEEEEeeccc-------------ceeeeeCCCcc------------hhhhhhh--ccceeEEEEeccCccEEEEcCCCc
Confidence 99999999997 38999987752 2223466 889999999999999999999999
Q ss_pred cEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEE
Q 003087 252 CLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMID 317 (849)
Q Consensus 252 tv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwd 317 (849)
|+++|++.+.+. ...++ +|...|+.|-|+|||. +++|+.|..+++|.
T Consensus 432 TLKvw~V~tkKl-~~DLp------------------Gh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 432 TLKVWDVRTKKL-KQDLP------------------GHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eEEEEEeeeeee-cccCC------------------CCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999997643 11222 4668899999999985 77899999999995
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3.6e-30 Score=273.38 Aligned_cols=237 Identities=15% Similarity=0.150 Sum_probs=192.9
Q ss_pred cccceEEEEEcCC--CCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCC
Q 003087 9 KTKKQVSLFISPR--GERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANG 85 (849)
Q Consensus 9 ~~~~v~slafSPd--G~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g 85 (849)
+...|.++.|+|. +..||+|+ |++|+||+.+.. .+++.++.| ...|..|+|.|+|++|++|+.|.|-|+||+..
T Consensus 216 H~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e--~~l~~l~gH-~~RVs~VafHPsG~~L~TasfD~tWRlWD~~t 292 (459)
T KOG0272|consen 216 HTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE--TPLQDLEGH-LARVSRVAFHPSGKFLGTASFDSTWRLWDLET 292 (459)
T ss_pred cccceeeEEEccCCCccceeeeccCCceeeeccCCC--cchhhhhcc-hhhheeeeecCCCceeeecccccchhhccccc
Confidence 4578999999998 67999998 899999997643 466666543 46788999999999999999999999999984
Q ss_pred -ccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceE
Q 003087 86 -EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVI 164 (849)
Q Consensus 86 -~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~ 164 (849)
.++... . +++..|.+++|.+|+.+.+++ |.|.+-|+||+.+|.+.-+ |.|| ...|.
T Consensus 293 k~ElL~Q-E---GHs~~v~~iaf~~DGSL~~tG-------GlD~~~RvWDlRtgr~im~-----------L~gH-~k~I~ 349 (459)
T KOG0272|consen 293 KSELLLQ-E---GHSKGVFSIAFQPDGSLAATG-------GLDSLGRVWDLRTGRCIMF-----------LAGH-IKEIL 349 (459)
T ss_pred chhhHhh-c---ccccccceeEecCCCceeecc-------CccchhheeecccCcEEEE-----------eccc-cccee
Confidence 443332 2 335679999999988776554 8999999999999887433 4554 55799
Q ss_pred EEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEcc-CCCE
Q 003087 165 CTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISP-QGKF 243 (849)
Q Consensus 165 svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSP-DG~~ 243 (849)
+|+|||+|-.||+||.|+| +++||+.....+.. ..+ |++-|..|.|+| -|++
T Consensus 350 ~V~fsPNGy~lATgs~Dnt-------------~kVWDLR~r~~ly~------------ipA--H~nlVS~Vk~~p~~g~f 402 (459)
T KOG0272|consen 350 SVAFSPNGYHLATGSSDNT-------------CKVWDLRMRSELYT------------IPA--HSNLVSQVKYSPQEGYF 402 (459)
T ss_pred eEeECCCceEEeecCCCCc-------------EEEeeeccccccee------------ccc--ccchhhheEecccCCeE
Confidence 9999999999999999974 89999876532111 124 999999999999 8999
Q ss_pred EEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEE
Q 003087 244 VATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMID 317 (849)
Q Consensus 244 LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwd 317 (849)
|||+|.|++++||...+.++ ++.+. +|.+.|.++..++|+. +++++.|.++++|.
T Consensus 403 L~TasyD~t~kiWs~~~~~~-~ksLa------------------GHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 403 LVTASYDNTVKIWSTRTWSP-LKSLA------------------GHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEcccCcceeeecCCCccc-chhhc------------------CCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999999999998765 55554 4557799999999986 77899999999995
No 7
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=2.5e-29 Score=285.08 Aligned_cols=245 Identities=13% Similarity=0.196 Sum_probs=194.2
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCC----------CCcc-------------------eeeeeecCCCCEEEE
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDD----------YQEP-------------------CGIFNCTGLGASIYG 60 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~----------~~~~-------------------~~~~~~~~~~~v~~v 60 (849)
..|.+..||+|+.+||.|- |..|++|..... ...+ ..++ ..|.++|-..
T Consensus 379 ~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L-~GH~GPVyg~ 457 (707)
T KOG0263|consen 379 QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTL-YGHSGPVYGC 457 (707)
T ss_pred CcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEe-ecCCCceeee
Confidence 5688999999999999985 679999986520 0000 0011 1347889999
Q ss_pred EECCCCCEEEEEeCCCcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCC
Q 003087 61 AWSESHDVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPS 140 (849)
Q Consensus 61 afSPDG~~LAs~~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~ 140 (849)
.||||.++|.|+|.|++||||.+....+..+..+| ..+|+.|.|+|-+ ..|+++|.|++.++|.......
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH---~~PVwdV~F~P~G-------yYFatas~D~tArLWs~d~~~P 527 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGH---LAPVWDVQFAPRG-------YYFATASHDQTARLWSTDHNKP 527 (707)
T ss_pred eecccccceeeccCCcceeeeecccceeEEEecCC---CcceeeEEecCCc-------eEEEecCCCceeeeeecccCCc
Confidence 99999999999999999999999876555555544 4689999999853 2588999999999999876554
Q ss_pred cccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceecccccee
Q 003087 141 ASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLY 220 (849)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~ 220 (849)
.++ |.||. ..|.|++|||++.++|+||.|.| |++||+.++.. .
T Consensus 528 lRi-----------faghl-sDV~cv~FHPNs~Y~aTGSsD~t-------------VRlWDv~~G~~------------V 570 (707)
T KOG0263|consen 528 LRI-----------FAGHL-SDVDCVSFHPNSNYVATGSSDRT-------------VRLWDVSTGNS------------V 570 (707)
T ss_pred hhh-----------hcccc-cccceEEECCcccccccCCCCce-------------EEEEEcCCCcE------------E
Confidence 444 34554 46999999999999999988864 89999987632 1
Q ss_pred eccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEec
Q 003087 221 CEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWS 300 (849)
Q Consensus 221 ~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~ 300 (849)
+.+.| |..+|.+|+|||+|++||||+.||.|+|||+.++.. +.++. +|.+.|.+++||.
T Consensus 571 RiF~G--H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~-v~~l~------------------~Ht~ti~SlsFS~ 629 (707)
T KOG0263|consen 571 RIFTG--HKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSL-VKQLK------------------GHTGTIYSLSFSR 629 (707)
T ss_pred EEecC--CCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcc-hhhhh------------------cccCceeEEEEec
Confidence 22345 888999999999999999999999999999999754 45543 3567899999999
Q ss_pred CCE-EEEEEeCCcEEEEEecCCccc
Q 003087 301 DNI-LILARKSSIITMIDVLSGLKV 324 (849)
Q Consensus 301 D~~-la~a~~dgti~lwdl~~~~~l 324 (849)
||. ||+++.|.+|++||+..-...
T Consensus 630 dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 630 DGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred CCCEEEecCCCCeEEEEEchhhccc
Confidence 985 788999999999999865543
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.96 E-value=4.9e-28 Score=245.77 Aligned_cols=256 Identities=11% Similarity=0.082 Sum_probs=194.2
Q ss_pred cccCcccc-----cceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCC
Q 003087 3 LYRQPRKT-----KKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTH 76 (849)
Q Consensus 3 ~~~~~~~~-----~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dg 76 (849)
+|..|.|| -.|..++.||||++..+|| |+++++||...+ ++...|.. |...|.+||||||.+.|+||+.|.
T Consensus 51 ~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g--~~t~~f~G-H~~dVlsva~s~dn~qivSGSrDk 127 (315)
T KOG0279|consen 51 KYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG--ESTRRFVG-HTKDVLSVAFSTDNRQIVSGSRDK 127 (315)
T ss_pred ccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC--cEEEEEEe-cCCceEEEEecCCCceeecCCCcc
Confidence 57777777 5689999999999999998 789999998753 44445543 366899999999999999999999
Q ss_pred cEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceec
Q 003087 77 TVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLR 156 (849)
Q Consensus 77 tIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~ 156 (849)
||+|||+-|.+.+++..+.. ...|..|.|+|.... . .++.++.|++|++||+.+-+.... +.
T Consensus 128 Tiklwnt~g~ck~t~~~~~~--~~WVscvrfsP~~~~--p---~Ivs~s~DktvKvWnl~~~~l~~~-----------~~ 189 (315)
T KOG0279|consen 128 TIKLWNTLGVCKYTIHEDSH--REWVSCVRFSPNESN--P---IIVSASWDKTVKVWNLRNCQLRTT-----------FI 189 (315)
T ss_pred eeeeeeecccEEEEEecCCC--cCcEEEEEEcCCCCC--c---EEEEccCCceEEEEccCCcchhhc-----------cc
Confidence 99999999998888765421 468999999995421 1 366779999999999986444322 23
Q ss_pred cccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEE
Q 003087 157 RQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVL 236 (849)
Q Consensus 157 ~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~va 236 (849)
+|...|+.+++||||.+.|+||.|+ .+.|||++.+..++ + .+ |...|.+++
T Consensus 190 -gh~~~v~t~~vSpDGslcasGgkdg-------------~~~LwdL~~~k~ly---s----------l~--a~~~v~sl~ 240 (315)
T KOG0279|consen 190 -GHSGYVNTVTVSPDGSLCASGGKDG-------------EAMLWDLNEGKNLY---S----------LE--AFDIVNSLC 240 (315)
T ss_pred -cccccEEEEEECCCCCEEecCCCCc-------------eEEEEEccCCceeE---e----------cc--CCCeEeeEE
Confidence 3455799999999999999988885 38999999874322 1 12 678999999
Q ss_pred EccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEE
Q 003087 237 ISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITM 315 (849)
Q Consensus 237 fSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~l 315 (849)
|||.-=.|+ +..+-.|+|||+.+..+ +..+.... ..|.-+.......+.+|++||+ |..+..||.|++
T Consensus 241 fspnrywL~-~at~~sIkIwdl~~~~~-v~~l~~d~---------~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv 309 (315)
T KOG0279|consen 241 FSPNRYWLC-AATATSIKIWDLESKAV-VEELKLDG---------IGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRV 309 (315)
T ss_pred ecCCceeEe-eccCCceEEEeccchhh-hhhccccc---------cccccccCCcEEEEEEEcCCCcEEEeeecCCcEEE
Confidence 999888777 45667799999998754 33332211 1111112224467899999996 678899999999
Q ss_pred EEec
Q 003087 316 IDVL 319 (849)
Q Consensus 316 wdl~ 319 (849)
|.+.
T Consensus 310 ~qv~ 313 (315)
T KOG0279|consen 310 WQVA 313 (315)
T ss_pred EEee
Confidence 9875
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=2.1e-27 Score=237.45 Aligned_cols=253 Identities=16% Similarity=0.198 Sum_probs=193.2
Q ss_pred cceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCcccee
Q 003087 11 KKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITR 90 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~ 90 (849)
..|+.|.++||++.||+|+...|+|+|+......|..++.. +...|++|.|-.||+++.+||.|||+||||+..-.+.+
T Consensus 41 sqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~-h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR 119 (311)
T KOG0315|consen 41 SQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEG-HTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQR 119 (311)
T ss_pred cceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEec-cCCceEEEEEeecCeEEEecCCCceEEEEeccCcccch
Confidence 67999999999999999999999999988765557766653 26899999999999999999999999999997654444
Q ss_pred cccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcC
Q 003087 91 FTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHP 170 (849)
Q Consensus 91 l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsP 170 (849)
.. .+.++|..|...|... +++++..+|.|++||+....+...+- . .-..+|.+++.+|
T Consensus 120 ~~----~~~spVn~vvlhpnQt-------eLis~dqsg~irvWDl~~~~c~~~li----------P-e~~~~i~sl~v~~ 177 (311)
T KOG0315|consen 120 NY----QHNSPVNTVVLHPNQT-------ELISGDQSGNIRVWDLGENSCTHELI----------P-EDDTSIQSLTVMP 177 (311)
T ss_pred hc----cCCCCcceEEecCCcc-------eEEeecCCCcEEEEEccCCccccccC----------C-CCCcceeeEEEcC
Confidence 43 3347899999988542 46777899999999998765422110 0 1123699999999
Q ss_pred CCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCC
Q 003087 171 ELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTN 250 (849)
Q Consensus 171 dg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~D 250 (849)
||++|+.+ +++ |. ..+|++........|.. +.+++. |+..+.++.||||+++|||+|.|
T Consensus 178 dgsml~a~-nnk----------G~--cyvW~l~~~~~~s~l~P------~~k~~a--h~~~il~C~lSPd~k~lat~ssd 236 (311)
T KOG0315|consen 178 DGSMLAAA-NNK----------GN--CYVWRLLNHQTASELEP------VHKFQA--HNGHILRCLLSPDVKYLATCSSD 236 (311)
T ss_pred CCcEEEEe-cCC----------cc--EEEEEccCCCccccceE------hhheec--ccceEEEEEECCCCcEEEeecCC
Confidence 99999755 443 55 45799977532222210 112233 77889999999999999999999
Q ss_pred CcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecCCcccc
Q 003087 251 GCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVLSGLKVK 325 (849)
Q Consensus 251 gtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~~~l~ 325 (849)
.+++||+.++- +.+... + .+|..++++.+||.||+ |++|+.|+++++|++..++++-
T Consensus 237 ktv~iwn~~~~-~kle~~-------------l----~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~ 294 (311)
T KOG0315|consen 237 KTVKIWNTDDF-FKLELV-------------L----TGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVR 294 (311)
T ss_pred ceEEEEecCCc-eeeEEE-------------e----ecCCceEEeeeeccCccEEEecCCCCceeecccccCceee
Confidence 99999999875 111110 0 14567899999999997 5678999999999999998653
No 10
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=3.5e-26 Score=245.79 Aligned_cols=256 Identities=17% Similarity=0.219 Sum_probs=195.5
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cccc
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEI 88 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~ 88 (849)
+.|++|+|+.||..||+|+ +|.++||+..+ ..+..+. .|.++|.+|.|+-+|++|++++-|||+-+||.. |...
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G---~l~~tl~-~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~ 311 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDG---NLISTLG-QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVK 311 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCc---hhhhhhh-ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEE
Confidence 6799999999999999998 78999999753 2333332 247899999999999999999999999999986 5432
Q ss_pred eecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEE
Q 003087 89 TRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDY 168 (849)
Q Consensus 89 ~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svaf 168 (849)
....-+. . |.-++-|..+..|++.+.||.|+++.+...... .+|.|| .+.|+++.|
T Consensus 312 q~f~~~s----~--------~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~-----------~t~~GH-~g~V~alk~ 367 (524)
T KOG0273|consen 312 QQFEFHS----A--------PALDVDWQSNDEFATSSTDGCIHVCKVGEDRPV-----------KTFIGH-HGEVNALKW 367 (524)
T ss_pred Eeeeecc----C--------CccceEEecCceEeecCCCceEEEEEecCCCcc-----------eeeecc-cCceEEEEE
Confidence 2221111 1 112234554557899999999999999754432 356664 567999999
Q ss_pred cCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCC------
Q 003087 169 HPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGK------ 242 (849)
Q Consensus 169 sPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~------ 242 (849)
.|.|++|+++|.|+| +++|.+........ +.+ |...|+.+.|||+|.
T Consensus 368 n~tg~LLaS~SdD~T-------------lkiWs~~~~~~~~~------------l~~--Hskei~t~~wsp~g~v~~n~~ 420 (524)
T KOG0273|consen 368 NPTGSLLASCSDDGT-------------LKIWSMGQSNSVHD------------LQA--HSKEIYTIKWSPTGPVTSNPN 420 (524)
T ss_pred CCCCceEEEecCCCe-------------eEeeecCCCcchhh------------hhh--hccceeeEeecCCCCccCCCc
Confidence 999999999999975 78888655422111 122 888999999999774
Q ss_pred ---EEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEe
Q 003087 243 ---FVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDV 318 (849)
Q Consensus 243 ---~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl 318 (849)
.||+++.|++|++||+..+.+ +..|. +|..+|++++|||+|+ +|+|+.||.|.||++
T Consensus 421 ~~~~l~sas~dstV~lwdv~~gv~-i~~f~------------------kH~~pVysvafS~~g~ylAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 421 MNLMLASASFDSTVKLWDVESGVP-IHTLM------------------KHQEPVYSVAFSPNGRYLASGSLDGCVHIWST 481 (524)
T ss_pred CCceEEEeecCCeEEEEEccCCce-eEeec------------------cCCCceEEEEecCCCcEEEecCCCCeeEeccc
Confidence 599999999999999998865 44443 4678999999999996 789999999999999
Q ss_pred cCCccccccCCCCCCeEEEEEecc
Q 003087 319 LSGLKVKETDPKLRGHVFLLESKS 342 (849)
Q Consensus 319 ~~~~~l~~~~~~~~g~~~~Le~~~ 342 (849)
++++.+.. -.-+|.||.|-+..
T Consensus 482 ~~~~l~~s--~~~~~~Ifel~Wn~ 503 (524)
T KOG0273|consen 482 KTGKLVKS--YQGTGGIFELCWNA 503 (524)
T ss_pred cchheeEe--ecCCCeEEEEEEcC
Confidence 99884432 12356788877754
No 11
>KOG4256 consensus Kinetochore component [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=2.9e-26 Score=260.33 Aligned_cols=592 Identities=14% Similarity=0.152 Sum_probs=375.4
Q ss_pred CCCCEEEEEeCCCcEEEEecCCccceecccccc---------cccccEEEEEecC-CcccccccceeEEEEeCCCcEEEE
Q 003087 64 ESHDVLGIVDDTHTVYFFKANGEEITRFTNKHL---------KVSLPIIGLIAQD-ETDVQRSCLCSFTVFTSDGFLHQI 133 (849)
Q Consensus 64 PDG~~LAs~~~dgtIrlWd~~g~~~~~l~~~~~---------~~~~~V~~l~fs~-~~~~~~s~~~~~~~~s~Dg~v~lw 133 (849)
-.|..|..+..-|++++..+.|+. ..+..... .-...+.-+.|+. .++. ++....+.|.+.+|
T Consensus 94 geGg~il~~E~lGnlhlifftgki-e~lr~aflqkakdE~rln~pna~~EiD~sncegT~------~m~lLifggffcit 166 (2209)
T KOG4256|consen 94 GEGGAILDFEILGNLHLIFFTGKI-EHLRIAFLQKAKDEIRLNEPNAPHEIDFSNCEGTS------SMCLLIFGGFFCIT 166 (2209)
T ss_pred cCCceEEeeeecCcceeEEEehhH-HHHHHHHHHhhhhhHhhcCCCCceecccccccchh------hhHHHHhccchhhh
Confidence 467788888888888888777753 11110000 0001233334432 1111 12233567888888
Q ss_pred EecCCCCccccc-ccccCCcceeccccCC-ceEEEEEcCCCceEEEEecCCCCccc-cCCCCCCceeeEEEecCCcCccc
Q 003087 134 EISQDPSASISS-ASASSSGLTLRRQFPQ-NVICTDYHPELSLLSVVSNTDTSSLT-SSGNSGPCCISLWRRCHNLELEQ 210 (849)
Q Consensus 134 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~-~V~svafsPdg~lLas~g~d~t~~~~-~~~~~G~~~I~lW~~~~~~~~~~ 210 (849)
++.+-+.....+ .++ .-....+++.+. ++.+--+|.-|++.-.+|.-. ..+. .++++|.|...-|.++....+..
T Consensus 167 hlilLk~dqAaekedf-r~akk~qdQIke~F~qaem~hTlgcls~magdlA-gdiplIigGpg~caFakwe~Dqqkgght 244 (2209)
T KOG4256|consen 167 HLILLKGDQAAEKEDF-RFAKKHQDQIKEFFHQAEMGHTLGCLSDMAGDLA-GDIPLIIGGPGLCAFAKWEIDQQKGGHT 244 (2209)
T ss_pred hheeccchhhhhhcch-hHHHHHHHHHHHHHHHHhcccchhHHHhhhhhhc-cCceEEecCcccccccccCcccccCcee
Confidence 876533322222 010 000112222221 233334555555543333221 1333 55888989999998876421111
Q ss_pred ceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCC
Q 003087 211 LYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPI 290 (849)
Q Consensus 211 l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (849)
. |.... ...--++..+...=.||- +.+.+.|...+||+...... ++.||+++-..+ +.|+++
T Consensus 245 ~------g~vei--daEiIggaKkFllirDg~-lFsLdlDn~~slWd~~~~s~-V~n~p~~efdef-----llpdda--- 306 (2209)
T KOG4256|consen 245 C------GLVEI--DAEIIGGAKKFLLIRDGG-LFSLDLDNDGSLWDHVFDSL-VSNFPCHEFDEF-----LLPDDA--- 306 (2209)
T ss_pred e------cceee--hHHHhhchhheeeeecCC-EEEEEcCCCcchhhheechh-hccCcchhhhhh-----cCCccc---
Confidence 0 00000 000001122233333443 45688888889999988765 789998775555 333322
Q ss_pred CCcEEEEEecCC------EEEEEEeCC-cEEEEEecCCccc--cccCC--------CCCCeEEEEEecccccccCCCCcc
Q 003087 291 SDITDFAWWSDN------ILILARKSS-IITMIDVLSGLKV--KETDP--------KLRGHVFLLESKSVEERFNVSNYD 353 (849)
Q Consensus 291 ~~v~~vaws~D~------~la~a~~dg-ti~lwdl~~~~~l--~~~~~--------~~~g~~~~Le~~~~~~~~~~~~~~ 353 (849)
....+|.|-..- .++++..|| +++|..++++... ++.+. ...+.++++++.+.++....++
T Consensus 307 dl~~sii~kgetelkkiaaiasankd~dnlkmmil~rlei~~~faldSssSltl~aiggddi~LiageckedpkadEd-- 384 (2209)
T KOG4256|consen 307 DLDFSIIDKGETELKKIAAIASANKDGDNLKMMILDRLEIDNCFALDSSSSLTLFAIGGDDIVLIAGECKEDPKADED-- 384 (2209)
T ss_pred cCCceeeecCchhHHHHHHHHhcccCCCceeEEeecchhhhceeeeccccceeEEEecCCcEEEEEeeeccCcccccc--
Confidence 223456653221 145666666 6888888888743 33222 1256778888877665433322
Q ss_pred cccccccchhhhhhhhhccccceeeEEEEEEeccCCHHHHHHHHHcccCHHHHHHHHHHhCCChhHHHHHHHh-------
Q 003087 354 RETVYSNHTVQLIEERFNRSGNTMLYWSLISFSERSVPEMYNILISHRNYQTAIDFANYHGLDTDEVLKSQWL------- 426 (849)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~tp~e~~~~~i~~~~~~~A~~lA~~~~ld~d~Vyk~~w~------- 426 (849)
+.+ ..+++|+++..||.+|.|++++++|.||+.||.+||||.+.|||.+=.
T Consensus 385 --------------------d~S--qiVlRclsealPEmRferLLhkhRFaEAEkFAiaFgLDVekVYK~khnHiLedla 442 (2209)
T KOG4256|consen 385 --------------------DGS--QIVLRCLSEALPEMRFERLLHKHRFAEAEKFAIAFGLDVEKVYKGKHNHILEDLA 442 (2209)
T ss_pred --------------------ccc--eeeHHHhhhhCcHhHHHHHHHhcchhHHHHHHHHHhhhHHHHhccchhHHHHHhh
Confidence 122 667899999999999999999999999999999999999999998532
Q ss_pred cCCCC----------HHHHHHhhhcCCChHHHHHHHhhccCCCHHHHHH--HHHHHhhccccCCccccCCcccchhhHH-
Q 003087 427 NSSQG----------TDEINMFLSKIKDQAFILSECVDKVGRTEDSAKA--LLAHGLHLTNQYKFSETEDDEYSQIWDY- 493 (849)
Q Consensus 427 ~s~~~----------~~~i~~~L~kI~D~~wV~~~Cl~~~~~~~~~~~~--LL~~gL~~t~~~~~~~~~~~~~~~~~~~- 493 (849)
.++|+ +++.++.|.||+|+.+|++.|..+++-+++..++ +|+||=+|-=.. .| ...-+
T Consensus 443 ~esvdasedee~eqlvddakekl~kIQDdefVae~cfkaq~is~e~dqertmLn~AKkRlikd-------eD--ilalI~ 513 (2209)
T KOG4256|consen 443 DESVDASEDEEFEQLVDDAKEKLGKIQDDEFVAETCFKAQGISRECDQERTMLNHAKKRLIKD-------ED--ILALIE 513 (2209)
T ss_pred hhcccccchhHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhcch-------HH--HHHHHH
Confidence 23332 6688999999999999999999999999988777 999995432110 00 00000
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC---CchH-HHHHhhcC-----cHHHHHHHHHHcCCcchHHHHHHHCCCCccHH----
Q 003087 494 RIARLQLLQFGDRLETYLGINMG---RYYA-EYSKFRIM-----PIHEAGVNLAESGKIGALNLLFKRHPYSLASS---- 560 (849)
Q Consensus 494 ~~~r~~ll~~ldRL~t~~~i~~~---~f~~-~~~~Fr~~-----~lv~~A~~~A~~g~i~aL~~L~~rh~~~l~p~---- 560 (849)
-.+-..+|.....+.+|.+.+++ +|++ -|.+|.++ ++++.-.+|-++||+...++||.||+..+..+
T Consensus 514 ad~lkevlgahaiiagf~eafePsrekfnesiW~eFlealhdaddlidIflefisdanftcAq~i~lRHganfedrf~~d 593 (2209)
T KOG4256|consen 514 ADCLKEVLGAHAIIAGFPEAFEPSREKFNESIWDEFLEALHDADDLIDIFLEFISDANFTCAQVIFLRHGANFEDRFCDD 593 (2209)
T ss_pred HHHHHHHHhhhhhhccCccccCCchhhhcchhHHHHHHhhcccchHHHHHHHHhhccceeehhhHHHhhcCchhhhhccc
Confidence 01345678888888888877776 6777 78888873 69999999999999999999999999998753
Q ss_pred ------HH-HHH----hhCCCCCCcccccccCCCCCCCCCccCccccchhhhhhhHHhhcCCCccccccccccchhhhcc
Q 003087 561 ------VL-QIL----AAIPETVPVQTYTQLLPGRSPPMTVAMREEDWVECDKMVRFIRRLPENHEISDQIRTEPIVRRS 629 (849)
Q Consensus 561 ------~l-~IL----s~lPEt~~P~~Y~~LLP~~~~~~~~~~r~~Dw~e~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~ 629 (849)
|| .++ +++.-.+ +....|+|++..+ ++ |.+++.
T Consensus 594 eentisrLEsLfrmfidaiSadi--Skqsklce~fknD---------------ii-------------------P~~rmi 637 (2209)
T KOG4256|consen 594 EENTISRLESLFRMFIDAISADI--SKQSKLCEHFKND---------------II-------------------PACRMI 637 (2209)
T ss_pred hhhhHHHHHHHHHHHHHHhhhhH--HHHhhhhhhhhcc---------------cc-------------------hHHHHh
Confidence 23 333 4443332 3445566665421 11 222211
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHhh--cCCchhHHHHHHHHH----------------------------HcC-----Ch
Q 003087 630 LRSLWPSINELTIWYKSRARDIDCY--SGQLDNCLCLIDFAC----------------------------RKG-----LT 674 (849)
Q Consensus 630 ~~~~~~~~~~l~~Wy~~RA~~ID~~--sG~~~~al~Ll~~~~----------------------------~~g-----~~ 674 (849)
. +.-.--|++|+.+-|+.+|-. +.|++||+.+..++- +.| +.
T Consensus 638 t---eEgii~Lak~ieqaar~LElrDkaNWPENaikaAeifdfmaeildelGntpatlail~hw~Skkd~qagnkpeemc 714 (2209)
T KOG4256|consen 638 T---EEGIICLAKLIEQAARLLELRDKANWPENAIKAAEIFDFMAEILDELGNTPATLAILVHWGSKKDSQAGNKPEEMC 714 (2209)
T ss_pred c---ccchHHHHHHHHHHHHHHhhccccCCchHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHhhhhcccccCCChHHHH
Confidence 0 111235789999999988865 899999999987771 011 33
Q ss_pred hHHHHHHhHHHHHHhhcccCCCCccccccchHHHhcCChHHH-HHHhh-CCCCchhHHHHhhhccccccccccccccccc
Q 003087 675 ELQQFHEDTSYLYQLIYSDETDGEISFSMSLTAWEQLSDYEK-FNTML-KGVKEENVIKRLRDKAIPFMQSRSHYLTSVG 752 (849)
Q Consensus 675 ~L~~l~~~l~~L~~lvye~~~~~~~~~~lsL~~~e~l~~~~~-~~~lL-~~~~~~~v~~dl~~~v~P~l~~~~~~~~~~~ 752 (849)
.+++++.||..|.||.-.|. |.+++++||+|+..++ ++++- +-.+|+.+..-|.+++-|||..+. +.
T Consensus 715 qikkivndL~ELirLhdkYe------CkiafSdFekenseqI~fkifdnalaaPeli~aiiEKFik~fMaEhd--Ld--- 783 (2209)
T KOG4256|consen 715 QIKKIVNDLIELIRLHDKYE------CKIAFSDFEKENSEQICFKIFDNALAAPELIHAIIEKFIKPFMAEHD--LD--- 783 (2209)
T ss_pred HHHHHHHHHHHHHHHHHHhc------ceeeHHhhhhcchhhhHHHHHhhhhcCchhhHHHHHHHHHHHHHhcc--cc---
Confidence 79999999999999987754 6799999999999999 56666 344789999999999999998722 21
Q ss_pred cccccccccCCCccCChHHHHHHHHHHh
Q 003087 753 QEHVMVDQSSADHEKDESFLVRWLKKIA 780 (849)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~l~~wl~~~a 780 (849)
.+++++-|+.++.
T Consensus 784 ---------------eEelillYIedll 796 (2209)
T KOG4256|consen 784 ---------------EEELILLYIEDLL 796 (2209)
T ss_pred ---------------HHHHHHHHHHHHh
Confidence 4577788877764
No 12
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.95 E-value=6.7e-26 Score=230.30 Aligned_cols=248 Identities=14% Similarity=0.167 Sum_probs=187.4
Q ss_pred cccccceEEEEEcCCC-CeEEEEe-CCeEEEEecCCC---CCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Q 003087 7 PRKTKKQVSLFISPRG-ERVAVAA-VNQVTILQKDDD---YQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFF 81 (849)
Q Consensus 7 ~~~~~~v~slafSPdG-~~LAsas-~~~i~iw~~~~~---~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlW 81 (849)
+.+-+.|.+++..|.+ +.|.+++ |.++.+|++..+ ++.+...+.. |...|..++.||||++..||+.||++|+|
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~G-HsH~v~dv~~s~dg~~alS~swD~~lrlW 90 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTG-HSHFVSDVVLSSDGNFALSASWDGTLRLW 90 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeec-cceEecceEEccCCceEEeccccceEEEE
Confidence 3456889999999985 5667777 678899976532 5555555553 25567899999999999999999999999
Q ss_pred ecCC-ccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccc-c
Q 003087 82 KANG-EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQ-F 159 (849)
Q Consensus 82 d~~g-~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~-~ 159 (849)
|+.+ +...++-+|. ..|.+|+|++|... +.+++.|.+|++||+-.+... ++..+ +
T Consensus 91 Dl~~g~~t~~f~GH~----~dVlsva~s~dn~q-------ivSGSrDkTiklwnt~g~ck~------------t~~~~~~ 147 (315)
T KOG0279|consen 91 DLATGESTRRFVGHT----KDVLSVAFSTDNRQ-------IVSGSRDKTIKLWNTLGVCKY------------TIHEDSH 147 (315)
T ss_pred EecCCcEEEEEEecC----CceEEEEecCCCce-------eecCCCcceeeeeeecccEEE------------EEecCCC
Confidence 9984 5444444332 56999999986543 444589999999998643321 12212 2
Q ss_pred CCceEEEEEcCC--CceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEE
Q 003087 160 PQNVICTDYHPE--LSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLI 237 (849)
Q Consensus 160 ~~~V~svafsPd--g~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vaf 237 (849)
.+.|+||.|||. ...|+++|.|+| |++|+..+-. + ...+.| |++.|..|++
T Consensus 148 ~~WVscvrfsP~~~~p~Ivs~s~Dkt-------------vKvWnl~~~~----l--------~~~~~g--h~~~v~t~~v 200 (315)
T KOG0279|consen 148 REWVSCVRFSPNESNPIIVSASWDKT-------------VKVWNLRNCQ----L--------RTTFIG--HSGYVNTVTV 200 (315)
T ss_pred cCcEEEEEEcCCCCCcEEEEccCCce-------------EEEEccCCcc----h--------hhcccc--ccccEEEEEE
Confidence 567999999999 678999999985 8999987631 1 113456 8999999999
Q ss_pred ccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEE
Q 003087 238 SPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMID 317 (849)
Q Consensus 238 SPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwd 317 (849)
||||.++|+|+.||.+.|||+..++. +..+ ++...|.+++|+|.--.+.+..+..|+|||
T Consensus 201 SpDGslcasGgkdg~~~LwdL~~~k~-lysl-------------------~a~~~v~sl~fspnrywL~~at~~sIkIwd 260 (315)
T KOG0279|consen 201 SPDGSLCASGGKDGEAMLWDLNEGKN-LYSL-------------------EAFDIVNSLCFSPNRYWLCAATATSIKIWD 260 (315)
T ss_pred CCCCCEEecCCCCceEEEEEccCCce-eEec-------------------cCCCeEeeEEecCCceeEeeccCCceEEEe
Confidence 99999999999999999999997754 2222 345779999999987544555566799999
Q ss_pred ecCCcccc
Q 003087 318 VLSGLKVK 325 (849)
Q Consensus 318 l~~~~~l~ 325 (849)
+.++..+.
T Consensus 261 l~~~~~v~ 268 (315)
T KOG0279|consen 261 LESKAVVE 268 (315)
T ss_pred ccchhhhh
Confidence 99988654
No 13
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.94 E-value=1.1e-26 Score=245.92 Aligned_cols=259 Identities=15% Similarity=0.213 Sum_probs=198.7
Q ss_pred cceEEEEEcCCCCeEEEEeC-CeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccce
Q 003087 11 KKQVSLFISPRGERVAVAAV-NQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEIT 89 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~ 89 (849)
-.|..|.|+|+|+.|.+|++ |..++|+... -....+...|...|+++.||++|++++||+.+|.|++|+.+-+.+.
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~---fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk 173 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS---FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVK 173 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCce---eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhH
Confidence 46899999999999999985 8999998521 0011111234678999999999999999999999999998755444
Q ss_pred ecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEc
Q 003087 90 RFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYH 169 (849)
Q Consensus 90 ~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafs 169 (849)
.+..+|. -+|..|+|+|.-. .|++++.||+|++||....+..+. |+| |...|.|++||
T Consensus 174 ~~~ahh~---eaIRdlafSpnDs-------kF~t~SdDg~ikiWdf~~~kee~v-----------L~G-HgwdVksvdWH 231 (464)
T KOG0284|consen 174 IIQAHHA---EAIRDLAFSPNDS-------KFLTCSDDGTIKIWDFRMPKEERV-----------LRG-HGWDVKSVDWH 231 (464)
T ss_pred HhhHhhh---hhhheeccCCCCc-------eeEEecCCCeEEEEeccCCchhhe-----------ecc-CCCCcceeccC
Confidence 5555542 4699999998221 488899999999999986665443 343 45579999999
Q ss_pred CCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeC
Q 003087 170 PELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDT 249 (849)
Q Consensus 170 Pdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~ 249 (849)
|.-.++||+|.|. .|++||..++.++-. ..+ |...|.++.|+|+|++|+|+|.
T Consensus 232 P~kgLiasgskDn-------------lVKlWDprSg~cl~t------------lh~--HKntVl~~~f~~n~N~Llt~sk 284 (464)
T KOG0284|consen 232 PTKGLIASGSKDN-------------LVKLWDPRSGSCLAT------------LHG--HKNTVLAVKFNPNGNWLLTGSK 284 (464)
T ss_pred CccceeEEccCCc-------------eeEeecCCCcchhhh------------hhh--ccceEEEEEEcCCCCeeEEccC
Confidence 9999999998886 389999887643211 123 7789999999999999999999
Q ss_pred CCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecC--CEEEEEEeCCcEEEEEecCCcccccc
Q 003087 250 NGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSD--NILILARKSSIITMIDVLSGLKVKET 327 (849)
Q Consensus 250 Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D--~~la~a~~dgti~lwdl~~~~~l~~~ 327 (849)
|..++++|+.+-+. +..+. +|...|.+++|+|= +.+++|+.||.|..|.+...+-+.+-
T Consensus 285 D~~~kv~DiR~mkE-l~~~r------------------~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i 345 (464)
T KOG0284|consen 285 DQSCKVFDIRTMKE-LFTYR------------------GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEI 345 (464)
T ss_pred CceEEEEehhHhHH-HHHhh------------------cchhhheeeccccccccceeeccCCCceEEEeccccccccCC
Confidence 99999999985432 33333 35567999999994 45788999999999999855545555
Q ss_pred CCCCCCeEEEEEe
Q 003087 328 DPKLRGHVFLLES 340 (849)
Q Consensus 328 ~~~~~g~~~~Le~ 340 (849)
.++|++.|-.|..
T Consensus 346 ~~AHd~~iwsl~~ 358 (464)
T KOG0284|consen 346 PPAHDGEIWSLAY 358 (464)
T ss_pred Ccccccceeeeec
Confidence 5688777766554
No 14
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.8e-25 Score=226.33 Aligned_cols=270 Identities=16% Similarity=0.142 Sum_probs=191.1
Q ss_pred cCcccccceEEEEEcCC-CCeEEEEe-CCeEEEEecCCCCCcceee-ee-ecCCCCEEEEEECCCCCEEEEEeCCCcEEE
Q 003087 5 RQPRKTKKQVSLFISPR-GERVAVAA-VNQVTILQKDDDYQEPCGI-FN-CTGLGASIYGAWSESHDVLGIVDDTHTVYF 80 (849)
Q Consensus 5 ~~~~~~~~v~slafSPd-G~~LAsas-~~~i~iw~~~~~~~~~~~~-~~-~~~~~~v~~vafSPDG~~LAs~~~dgtIrl 80 (849)
.-+++.++|+++||+|- |..||+++ |..|+||+...+ ..-..+ .. ..+...|+++||||.|++||+||-|.|+-|
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~-~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~I 87 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSG-DSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVI 87 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCC-CcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEE
Confidence 34778889999999998 89999998 579999997631 111111 11 123668999999999999999999999999
Q ss_pred EecCC---ccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceecc
Q 003087 81 FKANG---EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRR 157 (849)
Q Consensus 81 Wd~~g---~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~ 157 (849)
|.-.+ +++.++.+|. .-|-+++|++++.. +|+++.|..|-+|.+..+..-.... -|+
T Consensus 88 w~k~~~efecv~~lEGHE----nEVK~Vaws~sG~~-------LATCSRDKSVWiWe~deddEfec~a--------VL~- 147 (312)
T KOG0645|consen 88 WKKEDGEFECVATLEGHE----NEVKCVAWSASGNY-------LATCSRDKSVWIWEIDEDDEFECIA--------VLQ- 147 (312)
T ss_pred eecCCCceeEEeeeeccc----cceeEEEEcCCCCE-------EEEeeCCCeEEEEEecCCCcEEEEe--------eec-
Confidence 98753 3455554443 56889999886543 6778999999999998544311111 133
Q ss_pred ccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEE
Q 003087 158 QFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLI 237 (849)
Q Consensus 158 ~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vaf 237 (849)
.|.+.|..|.|||.--+|+|+|.|+| |++|+-....+.+-.. ...| |...|++++|
T Consensus 148 ~HtqDVK~V~WHPt~dlL~S~SYDnT-------------Ik~~~~~~dddW~c~~---------tl~g--~~~TVW~~~F 203 (312)
T KOG0645|consen 148 EHTQDVKHVIWHPTEDLLFSCSYDNT-------------IKVYRDEDDDDWECVQ---------TLDG--HENTVWSLAF 203 (312)
T ss_pred cccccccEEEEcCCcceeEEeccCCe-------------EEEEeecCCCCeeEEE---------EecC--ccceEEEEEe
Confidence 45678999999999999999999985 8999887533332221 2245 8889999999
Q ss_pred ccCCCEEEEEeCCCcEEEEecCCCccccccccc----cc--------------------ccccccccccCCCCCCCCCCc
Q 003087 238 SPQGKFVATSDTNGCLYIFEMDKDNFSLSKFAC----GE--------------------RFDLQVADSLFDGRTKPISDI 293 (849)
Q Consensus 238 SPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~----~~--------------------~~~~~~~~~l~~~~~~~~~~v 293 (849)
.|.|+.|++++.|++|+||.....-.-.+..+. +. ..+.+..+.+....+.|...|
T Consensus 204 ~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dV 283 (312)
T KOG0645|consen 204 DNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDV 283 (312)
T ss_pred cCCCceEEEecCCcceEeeeeccCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccccccc
Confidence 999999999999999999983321000010000 00 000111111221134566678
Q ss_pred EEEEEec--CCEEEEEEeCCcEEEEEec
Q 003087 294 TDFAWWS--DNILILARKSSIITMIDVL 319 (849)
Q Consensus 294 ~~vaws~--D~~la~a~~dgti~lwdl~ 319 (849)
.+|.|.| .++|++++.||+|++|.+.
T Consensus 284 NsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 284 NSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ceEEEcCCCCCceeecCCCceEEEEEec
Confidence 9999999 5689999999999999875
No 15
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=2.8e-25 Score=249.50 Aligned_cols=243 Identities=15% Similarity=0.208 Sum_probs=186.3
Q ss_pred cceEEEEEcCCCCeEEEEeC--CeEEEEecCCCCCcceeeee-ecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cc
Q 003087 11 KKQVSLFISPRGERVAVAAV--NQVTILQKDDDYQEPCGIFN-CTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GE 86 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~--~~i~iw~~~~~~~~~~~~~~-~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~ 86 (849)
.+|..++|+..|.+||.|+. +++-+|.+... .-.+. ..|...++++++||||+++|+|++||.|||||.+ |-
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE----sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf 383 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE----SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF 383 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccceEEEEEeecc----ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce
Confidence 57899999999999999986 58999987532 11222 2236789999999999999999999999999997 66
Q ss_pred cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT 166 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv 166 (849)
++.++..|. +.|.++.|...+.+ +.+.+-||+||.||+....+-+ +|..-.+..-.||
T Consensus 384 C~vTFteHt----s~Vt~v~f~~~g~~-------llssSLDGtVRAwDlkRYrNfR-----------Tft~P~p~Qfscv 441 (893)
T KOG0291|consen 384 CFVTFTEHT----SGVTAVQFTARGNV-------LLSSSLDGTVRAWDLKRYRNFR-----------TFTSPEPIQFSCV 441 (893)
T ss_pred EEEEeccCC----CceEEEEEEecCCE-------EEEeecCCeEEeeeecccceee-----------eecCCCceeeeEE
Confidence 777775543 67999999764433 4556899999999998655432 2333333347999
Q ss_pred EEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEE
Q 003087 167 DYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVAT 246 (849)
Q Consensus 167 afsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs 246 (849)
+..|.|.++..|+-|. .-|.+|.+.++. ++....| |.++|.+++|||+|+.|||
T Consensus 442 avD~sGelV~AG~~d~------------F~IfvWS~qTGq------------llDiLsG--HEgPVs~l~f~~~~~~LaS 495 (893)
T KOG0291|consen 442 AVDPSGELVCAGAQDS------------FEIFVWSVQTGQ------------LLDILSG--HEGPVSGLSFSPDGSLLAS 495 (893)
T ss_pred EEcCCCCEEEeeccce------------EEEEEEEeecCe------------eeehhcC--CCCcceeeEEccccCeEEe
Confidence 9999999887666664 348999998762 1222346 8999999999999999999
Q ss_pred EeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecCCccc
Q 003087 247 SDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVLSGLKV 324 (849)
Q Consensus 247 ~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~~~l 324 (849)
+|+|.|||+|++-......-.+ +....+.+|+|+|||+ |+++.-||.|.+||+..+.++
T Consensus 496 ~SWDkTVRiW~if~s~~~vEtl-------------------~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 496 GSWDKTVRIWDIFSSSGTVETL-------------------EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQV 555 (893)
T ss_pred ccccceEEEEEeeccCceeeeE-------------------eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceee
Confidence 9999999999997541111111 1335688999999995 999999999999999877644
No 16
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=7.8e-25 Score=252.72 Aligned_cols=253 Identities=13% Similarity=0.174 Sum_probs=187.4
Q ss_pred ccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEec-C-Cc
Q 003087 10 TKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKA-N-GE 86 (849)
Q Consensus 10 ~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~-~-g~ 86 (849)
...|..+.|||||+++|+++ ++.|++|+............ ..+...|..++|||||++|++|+.|++||+||+ . +.
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~ 237 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR 237 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc-cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe
Confidence 46788999999999999996 78999998743210012222 223678899999999999999999999999999 4 45
Q ss_pred cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT 166 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv 166 (849)
.+.++.+|. ..|.+++|+|++.. +++++.|++||+||+.++.+... |. .|..+|+++
T Consensus 238 ~~~~l~gH~----~~v~~~~f~p~g~~-------i~Sgs~D~tvriWd~~~~~~~~~-----------l~-~hs~~is~~ 294 (456)
T KOG0266|consen 238 NLKTLKGHS----TYVTSVAFSPDGNL-------LVSGSDDGTVRIWDVRTGECVRK-----------LK-GHSDGISGL 294 (456)
T ss_pred EEEEecCCC----CceEEEEecCCCCE-------EEEecCCCcEEEEeccCCeEEEe-----------ee-ccCCceEEE
Confidence 666666543 57899999997643 55669999999999998776544 33 456689999
Q ss_pred EEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEE
Q 003087 167 DYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVAT 246 (849)
Q Consensus 167 afsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs 246 (849)
+|+|||+.|++++.|++ |++||+.++... ....+..... .+ .+..+.|||+|++|++
T Consensus 295 ~f~~d~~~l~s~s~d~~-------------i~vwd~~~~~~~-------~~~~~~~~~~--~~-~~~~~~fsp~~~~ll~ 351 (456)
T KOG0266|consen 295 AFSPDGNLLVSASYDGT-------------IRVWDLETGSKL-------CLKLLSGAEN--SA-PVTSVQFSPNGKYLLS 351 (456)
T ss_pred EECCCCCEEEEcCCCcc-------------EEEEECCCCcee-------eeecccCCCC--CC-ceeEEEECCCCcEEEE
Confidence 99999999999988763 899999876311 0011111111 23 6999999999999999
Q ss_pred EeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecCCcccc
Q 003087 247 SDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVLSGLKVK 325 (849)
Q Consensus 247 ~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~~~l~ 325 (849)
++.|+++++|++..+.+ +.++..+.. + ...+.+...+++++ +.+++.|+.|.+|++.++..+.
T Consensus 352 ~~~d~~~~~w~l~~~~~-~~~~~~~~~--------------~-~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~ 415 (456)
T KOG0266|consen 352 ASLDRTLKLWDLRSGKS-VGTYTGHSN--------------L-VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQ 415 (456)
T ss_pred ecCCCeEEEEEccCCcc-eeeecccCC--------------c-ceeEecccccCCCCeEEEEeCCceEEEEeCCccchhh
Confidence 99999999999998765 455543210 0 01233444567776 5688999999999999876443
No 17
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=9.5e-24 Score=237.46 Aligned_cols=386 Identities=15% Similarity=0.163 Sum_probs=251.3
Q ss_pred ceEEEE-EcCCCCeEEEEeC-CeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCc-cc
Q 003087 12 KQVSLF-ISPRGERVAVAAV-NQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGE-EI 88 (849)
Q Consensus 12 ~v~sla-fSPdG~~LAsas~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~-~~ 88 (849)
-|.++. +-|+-+.||+|+. ..+++.+..+.+ +..+ ..|...|.+++-..+|-+||||+.|.+|+||.++.+ ..
T Consensus 325 EI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~---c~ii-~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~ 400 (775)
T KOG0319|consen 325 EILDMKFLGPEESHLAVATNSPELRLYTLPTSY---CQII-PGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSK 400 (775)
T ss_pred hheeeeecCCccceEEEEeCCCceEEEecCCCc---eEEE-eCchhheeeeeecccCcEEEEecCCceEEEEEecCCcch
Confidence 344444 3688899999985 789999765432 2222 234667889986668899999999999999988422 11
Q ss_pred eecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEE
Q 003087 89 TRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDY 168 (849)
Q Consensus 89 ~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svaf 168 (849)
........+++.+|.+|+++..+ ++ .|+++|.|+++++|++...+.... . .. -...+...-|...||||++
T Consensus 401 ~~~~a~~~gH~~svgava~~~~~---as---ffvsvS~D~tlK~W~l~~s~~~~~-~-~~-~~~~~t~~aHdKdIN~Vai 471 (775)
T KOG0319|consen 401 SLCVAQANGHTNSVGAVAGSKLG---AS---FFVSVSQDCTLKLWDLPKSKETAF-P-IV-LTCRYTERAHDKDINCVAI 471 (775)
T ss_pred hhhhhhhcccccccceeeecccC---cc---EEEEecCCceEEEecCCCcccccc-c-ce-ehhhHHHHhhcccccceEe
Confidence 11111122345678889985422 23 378889999999999875221100 0 00 0000011134557999999
Q ss_pred cCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEe
Q 003087 169 HPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSD 248 (849)
Q Consensus 169 sPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s 248 (849)
+|+.+++|+||-|+| .++|++... +..|.+ .| |..+|++|+|||..|.|||+|
T Consensus 472 a~ndkLiAT~SqDkt-------------aKiW~le~~---------~l~~vL---sG--H~RGvw~V~Fs~~dq~laT~S 524 (775)
T KOG0319|consen 472 APNDKLIATGSQDKT-------------AKIWDLEQL---------RLLGVL---SG--HTRGVWCVSFSKNDQLLATCS 524 (775)
T ss_pred cCCCceEEecccccc-------------eeeecccCc---------eEEEEe---eC--CccceEEEEeccccceeEecc
Confidence 999999999999986 688988732 112333 45 888999999999999999999
Q ss_pred CCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCC-EEEEEEeCCcEEEEEecCCcccccc
Q 003087 249 TNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDN-ILILARKSSIITMIDVLSGLKVKET 327 (849)
Q Consensus 249 ~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~-~la~a~~dgti~lwdl~~~~~l~~~ 327 (849)
.|+||+||.+.+..| +++|. +|...|..+.|-.+| ++++++.||-|+||+++++..+. .
T Consensus 525 gD~TvKIW~is~fSC-lkT~e------------------GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~-t 584 (775)
T KOG0319|consen 525 GDKTVKIWSISTFSC-LKTFE------------------GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEM-T 584 (775)
T ss_pred CCceEEEEEecccee-eeeec------------------CccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhh-h
Confidence 999999999999877 67765 355678888988766 69999999999999999988544 3
Q ss_pred CCCCCCeEEEEEecccccccCCCCcccccccccchhhhhhhh-----hccc-cceeeEEEEEEeccCCHHHHHHHHHccc
Q 003087 328 DPKLRGHVFLLESKSVEERFNVSNYDRETVYSNHTVQLIEER-----FNRS-GNTMLYWSLISFSERSVPEMYNILISHR 401 (849)
Q Consensus 328 ~~~~~g~~~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~l~~~~~~tp~e~~~~~i~~~ 401 (849)
-++|.+++-+|......+ .-... ..|..-.+| .+.++.. .++. .+. -+.-+..+|++.
T Consensus 585 lD~H~DrvWaL~~~~~~~-~~~tg-g~Dg~i~~w-kD~Te~~~~ee~~K~~eaie-------------q~QeL~n~l~~~ 648 (775)
T KOG0319|consen 585 LDAHNDRVWALSVSPLLD-MFVTG-GGDGRIIFW-KDVTEEEQNEEQEKREEAIE-------------QEQELENLLSQK 648 (775)
T ss_pred hhhccceeEEEeecCccc-eeEec-CCCeEEEEe-ecCcHHHHHHHHHHHHHHHH-------------HHHHHHHHHhhh
Confidence 567899999888755332 11100 011111122 1222110 0000 011 133456678899
Q ss_pred CHHHHHHHHHHhCCChhH--HHHHHHhcCCCCHHHHHHhhhcCCChHHHH--HHHhh--ccCCCHHHHHHHHHHHhhccc
Q 003087 402 NYQTAIDFANYHGLDTDE--VLKSQWLNSSQGTDEINMFLSKIKDQAFIL--SECVD--KVGRTEDSAKALLAHGLHLTN 475 (849)
Q Consensus 402 ~~~~A~~lA~~~~ld~d~--Vyk~~w~~s~~~~~~i~~~L~kI~D~~wV~--~~Cl~--~~~~~~~~~~~LL~~gL~~t~ 475 (849)
+|.+|+-||.+.+=..-. |.+.--++-. -|++.+.+..+.+++.++ +.|++ .-+-+-.+++.+|.+.|++-+
T Consensus 649 ~~~~A~~LA~tLd~P~~~f~vi~~~~r~r~--~e~l~~av~~L~~dq~~~Ll~~~~~WnTnsk~c~vaQ~vL~~~l~~~~ 726 (775)
T KOG0319|consen 649 RYTKAFVLALTLDKPHLVFTVINALYRERD--PEELGQAVFRLNEDQPEALLQFVVKWNTNSKTCHVAQRVLYEILKRVD 726 (775)
T ss_pred hhHHHHHhHhhccCchhHHHHHHHHHhcCC--cHHHHHHHHHhhhhhHHHHHHHHHHhcCCcchhHHHHHHHHHHHhccC
Confidence 999999999887643322 2333333322 566767777777666543 45554 222345667778888877654
No 18
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.92 E-value=8.3e-25 Score=248.57 Aligned_cols=202 Identities=13% Similarity=0.122 Sum_probs=161.1
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCcc
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEE 87 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~ 87 (849)
+-+.|+..+||||-++|.++| |.+|+||.++.. ...-.+. .|..+|+.|.|+|-|-+.||||.|+|.|||..+-..
T Consensus 450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~--s~~V~y~-GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~ 526 (707)
T KOG0263|consen 450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW--SCLVIYK-GHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK 526 (707)
T ss_pred CCCceeeeeecccccceeeccCCcceeeeecccc--eeEEEec-CCCcceeeEEecCCceEEEecCCCceeeeeecccCC
Confidence 348999999999999999998 579999997642 1222233 236689999999999999999999999999987433
Q ss_pred ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEE
Q 003087 88 ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTD 167 (849)
Q Consensus 88 ~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sva 167 (849)
-.++..+|. ..|.++.|.|+..- ++++|.|.+||+||+.+|...+.+ . +|+..|.+++
T Consensus 527 PlRifaghl---sDV~cv~FHPNs~Y-------~aTGSsD~tVRlWDv~~G~~VRiF-----------~-GH~~~V~al~ 584 (707)
T KOG0263|consen 527 PLRIFAGHL---SDVDCVSFHPNSNY-------VATGSSDRTVRLWDVSTGNSVRIF-----------T-GHKGPVTALA 584 (707)
T ss_pred chhhhcccc---cccceEEECCcccc-------cccCCCCceEEEEEcCCCcEEEEe-----------c-CCCCceEEEE
Confidence 233333332 46888999996542 445589999999999998876653 3 4677899999
Q ss_pred EcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEE
Q 003087 168 YHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATS 247 (849)
Q Consensus 168 fsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~ 247 (849)
|||+|++||+|+.|+ .|.+||+.++. .+ ...+| |++.|++|+||+||..||++
T Consensus 585 ~Sp~Gr~LaSg~ed~-------------~I~iWDl~~~~---~v---------~~l~~--Ht~ti~SlsFS~dg~vLasg 637 (707)
T KOG0263|consen 585 FSPCGRYLASGDEDG-------------LIKIWDLANGS---LV---------KQLKG--HTGTIYSLSFSRDGNVLASG 637 (707)
T ss_pred EcCCCceEeecccCC-------------cEEEEEcCCCc---ch---------hhhhc--ccCceeEEEEecCCCEEEec
Confidence 999999999999887 38999998752 11 12345 88899999999999999999
Q ss_pred eCCCcEEEEecCCCc
Q 003087 248 DTNGCLYIFEMDKDN 262 (849)
Q Consensus 248 s~Dgtv~LWd~~~~~ 262 (849)
|.|.+|++||+....
T Consensus 638 g~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 638 GADNSVRLWDLTKVI 652 (707)
T ss_pred CCCCeEEEEEchhhc
Confidence 999999999998653
No 19
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.92 E-value=1.9e-23 Score=213.51 Aligned_cols=246 Identities=13% Similarity=0.126 Sum_probs=189.2
Q ss_pred ccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCc
Q 003087 8 RKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGE 86 (849)
Q Consensus 8 ~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~ 86 (849)
.+.++|+++.|++|+++|+++| |+.+.|||.-.. .....++. ....|...||||.|+++|+|+-|+...|++++.+
T Consensus 53 GH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Tt--nK~haipl-~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~ 129 (343)
T KOG0286|consen 53 GHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTT--NKVHAIPL-PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTR 129 (343)
T ss_pred ccccceeeeEecCCcCeEEeeccCCeEEEEEcccc--cceeEEec-CceeEEEEEECCCCCeEEecCcCceeEEEecccc
Confidence 3559999999999999999998 889999995432 11111221 1567889999999999999999999999998743
Q ss_pred ------cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccC
Q 003087 87 ------EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFP 160 (849)
Q Consensus 87 ------~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (849)
...+...+| ...+.+..|.+|. ++.+.|.|.+.-+||+.+|+.... |. +|.
T Consensus 130 d~~g~~~v~r~l~gH---tgylScC~f~dD~--------~ilT~SGD~TCalWDie~g~~~~~-----------f~-GH~ 186 (343)
T KOG0286|consen 130 DAEGNVRVSRELAGH---TGYLSCCRFLDDN--------HILTGSGDMTCALWDIETGQQTQV-----------FH-GHT 186 (343)
T ss_pred cccccceeeeeecCc---cceeEEEEEcCCC--------ceEecCCCceEEEEEcccceEEEE-----------ec-CCc
Confidence 122222223 3457778887754 455668999999999998876443 34 456
Q ss_pred CceEEEEEcC-CCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEcc
Q 003087 161 QNVICTDYHP-ELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISP 239 (849)
Q Consensus 161 ~~V~svafsP-dg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSP 239 (849)
..|.+++++| +++++++||+|++ -++||+..+... +.+.| |+..|++|.|-|
T Consensus 187 gDV~slsl~p~~~ntFvSg~cD~~-------------aklWD~R~~~c~------------qtF~g--hesDINsv~ffP 239 (343)
T KOG0286|consen 187 GDVMSLSLSPSDGNTFVSGGCDKS-------------AKLWDVRSGQCV------------QTFEG--HESDINSVRFFP 239 (343)
T ss_pred ccEEEEecCCCCCCeEEecccccc-------------eeeeeccCccee------------Eeecc--cccccceEEEcc
Confidence 6799999999 9999999999974 689999875322 23356 999999999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEE-EEEeCCcEEEEEe
Q 003087 240 QGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILI-LARKSSIITMIDV 318 (849)
Q Consensus 240 DG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la-~a~~dgti~lwdl 318 (849)
+|.-+||++.|++.+++|+...+. +..+... ....+|.+|+||--|+|. .+..|.++.+||.
T Consensus 240 ~G~afatGSDD~tcRlyDlRaD~~-~a~ys~~----------------~~~~gitSv~FS~SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 240 SGDAFATGSDDATCRLYDLRADQE-LAVYSHD----------------SIICGITSVAFSKSGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred CCCeeeecCCCceeEEEeecCCcE-EeeeccC----------------cccCCceeEEEcccccEEEeeecCCceeEeec
Confidence 999999999999999999998753 5555310 123578999999999876 5589999999998
Q ss_pred cCCcc
Q 003087 319 LSGLK 323 (849)
Q Consensus 319 ~~~~~ 323 (849)
-.++.
T Consensus 303 lk~e~ 307 (343)
T KOG0286|consen 303 LKGER 307 (343)
T ss_pred cccce
Confidence 77763
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=1.9e-23 Score=234.89 Aligned_cols=261 Identities=18% Similarity=0.220 Sum_probs=183.8
Q ss_pred CcccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC
Q 003087 6 QPRKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN 84 (849)
Q Consensus 6 ~~~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~ 84 (849)
+..+-.++.+++.||||+++|+|+ |+.|+|||...++ .+-+|+ +|...|+.+.|+.+|+.|.|++-|||||.||+.
T Consensus 346 QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf--C~vTFt-eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlk 422 (893)
T KOG0291|consen 346 QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF--CFVTFT-EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLK 422 (893)
T ss_pred ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce--EEEEec-cCCCceEEEEEEecCCEEEEeecCCeEEeeeec
Confidence 355678899999999999999997 6899999965432 233344 347889999999999999999999999999996
Q ss_pred -CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCC-cEEEEEecCCCCcccccccccCCcceeccccCCc
Q 003087 85 -GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDG-FLHQIEISQDPSASISSASASSSGLTLRRQFPQN 162 (849)
Q Consensus 85 -g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg-~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 162 (849)
....++++.... ....+|+-.|.+.. +..++.|. .|.+|++.+|+...++ + +|..+
T Consensus 423 RYrNfRTft~P~p---~QfscvavD~sGel-------V~AG~~d~F~IfvWS~qTGqllDiL-----------s-GHEgP 480 (893)
T KOG0291|consen 423 RYRNFRTFTSPEP---IQFSCVAVDPSGEL-------VCAGAQDSFEIFVWSVQTGQLLDIL-----------S-GHEGP 480 (893)
T ss_pred ccceeeeecCCCc---eeeeEEEEcCCCCE-------EEeeccceEEEEEEEeecCeeeehh-----------c-CCCCc
Confidence 665555544321 12334554443322 11112333 3899999999986553 3 56778
Q ss_pred eEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCc-CcccceeccccceeeccCCCccccccceEEEccCC
Q 003087 163 VICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNL-ELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQG 241 (849)
Q Consensus 163 V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~-~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG 241 (849)
|.++.|+|+|.+|||+|+|+| |++|++.+.. ..+++- +...|..|+|+|||
T Consensus 481 Vs~l~f~~~~~~LaS~SWDkT-------------VRiW~if~s~~~vEtl~---------------i~sdvl~vsfrPdG 532 (893)
T KOG0291|consen 481 VSGLSFSPDGSLLASGSWDKT-------------VRIWDIFSSSGTVETLE---------------IRSDVLAVSFRPDG 532 (893)
T ss_pred ceeeEEccccCeEEeccccce-------------EEEEEeeccCceeeeEe---------------eccceeEEEEcCCC
Confidence 999999999999999999985 8999997652 112221 34578899999999
Q ss_pred CEEEEEeCCCcEEEEecCCCccccccccccccccc----ccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEE
Q 003087 242 KFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDL----QVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMI 316 (849)
Q Consensus 242 ~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~----~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lw 316 (849)
+-||++..||.|.+||+..... +... .+..+. ...+-++.+..........+.+|+||. |++|+.++.|-|+
T Consensus 533 ~elaVaTldgqItf~d~~~~~q-~~~I--dgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY 609 (893)
T KOG0291|consen 533 KELAVATLDGQITFFDIKEAVQ-VGSI--DGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIY 609 (893)
T ss_pred CeEEEEEecceEEEEEhhhcee-eccc--cchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEE
Confidence 9999999999999999986522 1111 111000 001122222111223467899999997 5577899999999
Q ss_pred EecCCc
Q 003087 317 DVLSGL 322 (849)
Q Consensus 317 dl~~~~ 322 (849)
+++++-
T Consensus 610 ~v~~~v 615 (893)
T KOG0291|consen 610 DVPEGV 615 (893)
T ss_pred ECchhh
Confidence 999875
No 21
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.91 E-value=6.7e-23 Score=222.99 Aligned_cols=264 Identities=17% Similarity=0.188 Sum_probs=184.5
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCC----CcEEEEecCC
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDT----HTVYFFKANG 85 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~d----gtIrlWd~~g 85 (849)
-.++-..|||.|-|+|||- .++|+||+.......+...++. -.+.|..++|++||++||..+.- |.+-+||. |
T Consensus 60 ~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v-~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DS-G 137 (603)
T KOG0318|consen 60 HQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQV-LAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDS-G 137 (603)
T ss_pred ceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeee-cccccccceeCCCCcEEEEEecCccceeEEEEecC-C
Confidence 4577788999999999996 5899999975422111122221 15789999999999999977653 56777874 4
Q ss_pred ccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEE
Q 003087 86 EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVIC 165 (849)
Q Consensus 86 ~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~s 165 (849)
...-.+.+| +..|+++.|-|.+-. ++++++.|++|-+++- +.-. +. .+++ .|.++|+|
T Consensus 138 ~SvGei~Gh----Sr~ins~~~KpsRPf------Ri~T~sdDn~v~ffeG---PPFK-Fk-------~s~r-~HskFV~~ 195 (603)
T KOG0318|consen 138 NSVGEITGH----SRRINSVDFKPSRPF------RIATGSDDNTVAFFEG---PPFK-FK-------SSFR-EHSKFVNC 195 (603)
T ss_pred Cccceeecc----ceeEeeeeccCCCce------EEEeccCCCeEEEeeC---CCee-ee-------eccc-ccccceee
Confidence 444445443 467999999773321 4677799999988862 2111 11 1233 56679999
Q ss_pred EEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEE
Q 003087 166 TDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVA 245 (849)
Q Consensus 166 vafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LA 245 (849)
|.|||||.++|++|.|++ |.++|=.++ +.+ |.+....+ |+++|++++||||++.++
T Consensus 196 VRysPDG~~Fat~gsDgk-------------i~iyDGktg---e~v------g~l~~~~a--HkGsIfalsWsPDs~~~~ 251 (603)
T KOG0318|consen 196 VRYSPDGSRFATAGSDGK-------------IYIYDGKTG---EKV------GELEDSDA--HKGSIFALSWSPDSTQFL 251 (603)
T ss_pred EEECCCCCeEEEecCCcc-------------EEEEcCCCc---cEE------EEecCCCC--ccccEEEEEECCCCceEE
Confidence 999999999999999973 566654332 222 22221234 888999999999999999
Q ss_pred EEeCCCcEEEEecCCCcccccccccccc-ccccc-----------------ccccCCC-------CCCCCCCcEEEEEec
Q 003087 246 TSDTNGCLYIFEMDKDNFSLSKFACGER-FDLQV-----------------ADSLFDG-------RTKPISDITDFAWWS 300 (849)
Q Consensus 246 s~s~Dgtv~LWd~~~~~~~l~~~~~~~~-~~~~~-----------------~~~l~~~-------~~~~~~~v~~vaws~ 300 (849)
|+|.|.+++|||+.+..+ .++|+...+ +++++ .+-|+++ ..+|...|..++-++
T Consensus 252 T~SaDkt~KIWdVs~~sl-v~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~ 330 (603)
T KOG0318|consen 252 TVSADKTIKIWDVSTNSL-VSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP 330 (603)
T ss_pred EecCCceEEEEEeeccce-EEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC
Confidence 999999999999998865 677766443 11111 1222333 234666788888888
Q ss_pred CCE-EEEEEeCCcEEEEEecCCcc
Q 003087 301 DNI-LILARKSSIITMIDVLSGLK 323 (849)
Q Consensus 301 D~~-la~a~~dgti~lwdl~~~~~ 323 (849)
|+. |.+|+.||.|.=|++.+|..
T Consensus 331 d~~~i~SgsyDG~I~~W~~~~g~~ 354 (603)
T KOG0318|consen 331 DGKTIYSGSYDGHINSWDSGSGTS 354 (603)
T ss_pred CCCEEEeeccCceEEEEecCCccc
Confidence 885 67889999999999888864
No 22
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.91 E-value=1.1e-22 Score=208.71 Aligned_cols=267 Identities=13% Similarity=0.145 Sum_probs=193.8
Q ss_pred cccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-
Q 003087 7 PRKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN- 84 (849)
Q Consensus 7 ~~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~- 84 (849)
|.+.+-|+.+.|+|||.++|+|+ |..|.+|+..++ ..-..... .+.+.|..|.|.+||..|.|++.|.+|+.||+.
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd-ceN~~~lk-gHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t 121 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD-CENFWVLK-GHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET 121 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcceEEEEecccc-ccceeeec-cccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence 55668899999999999999997 678999996543 11111222 237899999999999999999999999999996
Q ss_pred CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceE
Q 003087 85 GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVI 164 (849)
Q Consensus 85 g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~ 164 (849)
|+.++.... | ...|+++...+-+.. -+.+.+.||++++||+.+......++ . +..+.
T Consensus 122 G~~~rk~k~-h---~~~vNs~~p~rrg~~------lv~SgsdD~t~kl~D~R~k~~~~t~~-----------~--kyqlt 178 (338)
T KOG0265|consen 122 GKRIRKHKG-H---TSFVNSLDPSRRGPQ------LVCSGSDDGTLKLWDIRKKEAIKTFE-----------N--KYQLT 178 (338)
T ss_pred ceeeehhcc-c---cceeeecCccccCCe------EEEecCCCceEEEEeecccchhhccc-----------c--ceeEE
Confidence 766554433 2 345666663332211 24556899999999998655443322 1 22489
Q ss_pred EEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEE
Q 003087 165 CTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFV 244 (849)
Q Consensus 165 svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~L 244 (849)
+|.|..++.-..+||-|+. |++|++..+. +++ ...| |.+.|..|+.||+|.+|
T Consensus 179 Av~f~d~s~qv~sggIdn~-------------ikvWd~r~~d-----------~~~-~lsG--h~DtIt~lsls~~gs~l 231 (338)
T KOG0265|consen 179 AVGFKDTSDQVISGGIDND-------------IKVWDLRKND-----------GLY-TLSG--HADTITGLSLSRYGSFL 231 (338)
T ss_pred EEEecccccceeeccccCc-------------eeeeccccCc-----------ceE-Eeec--ccCceeeEEeccCCCcc
Confidence 9999999999999998863 8999985431 111 2346 99999999999999999
Q ss_pred EEEeCCCcEEEEecCCC---cccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecC
Q 003087 245 ATSDTNGCLYIFEMDKD---NFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVLS 320 (849)
Q Consensus 245 As~s~Dgtv~LWd~~~~---~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~ 320 (849)
.|-+.|.+|++||+..- ++.++.+..+. + .+--.....+|+|++. +..++.|..+.+||..+
T Consensus 232 lsnsMd~tvrvwd~rp~~p~~R~v~if~g~~---h-----------nfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 232 LSNSMDNTVRVWDVRPFAPSQRCVKIFQGHI---H-----------NFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred ccccccceEEEEEecccCCCCceEEEeecch---h-----------hhhhhcceeeccCCCCccccccccceEEEeeccc
Confidence 99999999999999732 11244443211 0 1112346689999986 66789999999999988
Q ss_pred CccccccCCCCCCeEEEEEe
Q 003087 321 GLKVKETDPKLRGHVFLLES 340 (849)
Q Consensus 321 ~~~l~~~~~~~~g~~~~Le~ 340 (849)
.+.+|. .|+|.|.|.-+.-
T Consensus 298 r~~lyk-lpGh~gsvn~~~F 316 (338)
T KOG0265|consen 298 RRILYK-LPGHYGSVNEVDF 316 (338)
T ss_pred ccEEEE-cCCcceeEEEeee
Confidence 777775 6777777765443
No 23
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=4.5e-23 Score=216.13 Aligned_cols=244 Identities=9% Similarity=0.111 Sum_probs=191.3
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCC--
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANG-- 85 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g-- 85 (849)
.|..|+.+-|.|+=-.+|+|+ |.+|++||..++ .....+.+ +...+.+|+|+..|++||+++.|=.+++||..+
T Consensus 107 ~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg--~~e~~LrG-Ht~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~ 183 (406)
T KOG0295|consen 107 HRSSVTRVIFHPSEALVVSASEDATIKVFDTETG--ELERSLRG-HTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFF 183 (406)
T ss_pred cccceeeeeeccCceEEEEecCCceEEEEEccch--hhhhhhhc-cccceeEEEEecCccEEEecCCccchhheeHHHHH
Confidence 567899999999999999998 579999997653 22222222 356699999999999999999999999999875
Q ss_pred ccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEE
Q 003087 86 EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVIC 165 (849)
Q Consensus 86 ~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~s 165 (849)
+++....+| ...|.+|.|.|.+. ++++++.|.+|+.|++.+|-+... |++ |+..|..
T Consensus 184 ~c~ks~~gh----~h~vS~V~f~P~gd-------~ilS~srD~tik~We~~tg~cv~t-----------~~~-h~ewvr~ 240 (406)
T KOG0295|consen 184 RCIKSLIGH----EHGVSSVFFLPLGD-------HILSCSRDNTIKAWECDTGYCVKT-----------FPG-HSEWVRM 240 (406)
T ss_pred HHHHHhcCc----ccceeeEEEEecCC-------eeeecccccceeEEecccceeEEe-----------ccC-chHhEEE
Confidence 233333333 24588899988542 567779999999999999887543 444 4668999
Q ss_pred EEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccC-----
Q 003087 166 TDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQ----- 240 (849)
Q Consensus 166 vafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPD----- 240 (849)
|+.+-||.++|++|.|.| |++|-+....... .+.+ |+.+|-+++|-|.
T Consensus 241 v~v~~DGti~As~s~dqt-------------l~vW~~~t~~~k~------------~lR~--hEh~vEci~wap~~~~~~ 293 (406)
T KOG0295|consen 241 VRVNQDGTIIASCSNDQT-------------LRVWVVATKQCKA------------ELRE--HEHPVECIAWAPESSYPS 293 (406)
T ss_pred EEecCCeeEEEecCCCce-------------EEEEEeccchhhh------------hhhc--cccceEEEEecccccCcc
Confidence 999999999999999974 8999887752111 1123 7778888888773
Q ss_pred ----------CCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEe
Q 003087 241 ----------GKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARK 309 (849)
Q Consensus 241 ----------G~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~ 309 (849)
|++|++++.|++|++||++++.| |-++. +|.++|.+++|+|.|+ |++...
T Consensus 294 i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c-L~tL~------------------ghdnwVr~~af~p~Gkyi~ScaD 354 (406)
T KOG0295|consen 294 ISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC-LFTLV------------------GHDNWVRGVAFSPGGKYILSCAD 354 (406)
T ss_pred hhhccCCCCCccEEEeecccceEEEEeccCCeE-EEEEe------------------cccceeeeeEEcCCCeEEEEEec
Confidence 47999999999999999999976 33332 4678999999999998 678899
Q ss_pred CCcEEEEEecCCccc
Q 003087 310 SSIITMIDVLSGLKV 324 (849)
Q Consensus 310 dgti~lwdl~~~~~l 324 (849)
|+++++||+++++..
T Consensus 355 Dktlrvwdl~~~~cm 369 (406)
T KOG0295|consen 355 DKTLRVWDLKNLQCM 369 (406)
T ss_pred CCcEEEEEeccceee
Confidence 999999999998843
No 24
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.91 E-value=4.1e-22 Score=216.91 Aligned_cols=290 Identities=17% Similarity=0.181 Sum_probs=196.6
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeee--cCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cc
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNC--TGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GE 86 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~--~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~ 86 (849)
+.|.+|.|||||.++|+++ |++|.|+|-.+ +...+.+.. .|.+.|-+|+||||++.+++++.|.|+||||+. ++
T Consensus 191 kFV~~VRysPDG~~Fat~gsDgki~iyDGkt--ge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~s 268 (603)
T KOG0318|consen 191 KFVNCVRYSPDGSRFATAGSDGKIYIYDGKT--GEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNS 268 (603)
T ss_pred cceeeEEECCCCCeEEEecCCccEEEEcCCC--ccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccc
Confidence 6899999999999999996 78999998554 344555541 237889999999999999999999999999997 55
Q ss_pred cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT 166 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv 166 (849)
.+.+++-... +...-.++.+ . ..++.+.+.+|+|...+.+.+.... .+.|| ...|+++
T Consensus 269 lv~t~~~~~~-v~dqqvG~lW--------q-kd~lItVSl~G~in~ln~~d~~~~~-----------~i~GH-nK~ITaL 326 (603)
T KOG0318|consen 269 LVSTWPMGST-VEDQQVGCLW--------Q-KDHLITVSLSGTINYLNPSDPSVLK-----------VISGH-NKSITAL 326 (603)
T ss_pred eEEEeecCCc-hhceEEEEEE--------e-CCeEEEEEcCcEEEEecccCCChhh-----------eeccc-ccceeEE
Confidence 5555543221 1122223332 2 2357778999999999987655332 34555 5579999
Q ss_pred EEcCCCceEEEEecCCCCccccCC--CCC----C---cee------------------eEEEec--CC---------cCc
Q 003087 167 DYHPELSLLSVVSNTDTSSLTSSG--NSG----P---CCI------------------SLWRRC--HN---------LEL 208 (849)
Q Consensus 167 afsPdg~lLas~g~d~t~~~~~~~--~~G----~---~~I------------------~lW~~~--~~---------~~~ 208 (849)
+.||||+.|.+|+.|+.+-.|.++ .+. . ..| ++|... ++ ...
T Consensus 327 tv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~ 406 (603)
T KOG0318|consen 327 TVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGS 406 (603)
T ss_pred EEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCC
Confidence 999999999999999977667442 111 0 001 112210 00 000
Q ss_pred ccc---------------------eecc----------------------------cccee--eccCC---------Ccc
Q 003087 209 EQL---------------------YTTQ----------------------------IEGLY--CEPKG---------HEV 228 (849)
Q Consensus 209 ~~l---------------------~~~~----------------------------~~~~~--~~~~g---------~~h 228 (849)
|+. ...+ .++-+ -+..| ..|
T Consensus 407 QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h 486 (603)
T KOG0318|consen 407 QPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEH 486 (603)
T ss_pred CceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecc
Confidence 110 0000 00000 00111 128
Q ss_pred ccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEE
Q 003087 229 QLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILA 307 (849)
Q Consensus 229 ~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a 307 (849)
...|..|+|||||++||+++..+.|-+||+.+.......|.+ |.+.|..++|+|++. +|+|
T Consensus 487 ~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~F------------------HtakI~~~aWsP~n~~vATG 548 (603)
T KOG0318|consen 487 RAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAF------------------HTAKINCVAWSPNNKLVATG 548 (603)
T ss_pred cCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeee------------------eeeeEEEEEeCCCceEEEec
Confidence 889999999999999999999999999999987543334432 457799999999986 6789
Q ss_pred EeCCcEEEEEecCCccccccCCCCCCeEEEEEecc
Q 003087 308 RKSSIITMIDVLSGLKVKETDPKLRGHVFLLESKS 342 (849)
Q Consensus 308 ~~dgti~lwdl~~~~~l~~~~~~~~g~~~~Le~~~ 342 (849)
+-|-+|.||++..-.+-..-..+|-+.+..|.+..
T Consensus 549 SlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wld 583 (603)
T KOG0318|consen 549 SLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLD 583 (603)
T ss_pred cccceEEEEEccChhhheEeccccccCceeEEEec
Confidence 99999999999865432322346656677777754
No 25
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.90 E-value=1.6e-21 Score=204.78 Aligned_cols=259 Identities=15% Similarity=0.198 Sum_probs=184.7
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCC-c
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANG-E 86 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g-~ 86 (849)
+.+.|.+++|+|+|++||+++ ++.|.+|+..+. ........ +...+..+.|+|++++|++++.||+|++|++.+ +
T Consensus 8 h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~--~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~ 84 (289)
T cd00200 8 HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG--ELLRTLKG-HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE 84 (289)
T ss_pred cCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC--CcEEEEec-CCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc
Confidence 457899999999999999998 789999997643 22222222 245678999999999999999999999999985 4
Q ss_pred cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT 166 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv 166 (849)
.+..+..+ ...|.++.|++++. .+++.+.||.+++|++.++.... .+. .+...|.++
T Consensus 85 ~~~~~~~~----~~~i~~~~~~~~~~-------~~~~~~~~~~i~~~~~~~~~~~~-----------~~~-~~~~~i~~~ 141 (289)
T cd00200 85 CVRTLTGH----TSYVSSVAFSPDGR-------ILSSSSRDKTIKVWDVETGKCLT-----------TLR-GHTDWVNSV 141 (289)
T ss_pred ceEEEecc----CCcEEEEEEcCCCC-------EEEEecCCCeEEEEECCCcEEEE-----------Eec-cCCCcEEEE
Confidence 44444332 24688899987522 23444559999999997544322 122 335579999
Q ss_pred EEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEE
Q 003087 167 DYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVAT 246 (849)
Q Consensus 167 afsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs 246 (849)
+|+|+++++++++.++ .|++|++....... .+ .+ |...|.+++|+|+|+.|++
T Consensus 142 ~~~~~~~~l~~~~~~~-------------~i~i~d~~~~~~~~---------~~---~~--~~~~i~~~~~~~~~~~l~~ 194 (289)
T cd00200 142 AFSPDGTFVASSSQDG-------------TIKLWDLRTGKCVA---------TL---TG--HTGEVNSVAFSPDGEKLLS 194 (289)
T ss_pred EEcCcCCEEEEEcCCC-------------cEEEEEccccccce---------eE---ec--CccccceEEECCCcCEEEE
Confidence 9999999988776464 38999987532111 11 12 6668999999999999999
Q ss_pred EeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEE-eCCcEEEEEecCCcccc
Q 003087 247 SDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILAR-KSSIITMIDVLSGLKVK 325 (849)
Q Consensus 247 ~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~-~dgti~lwdl~~~~~l~ 325 (849)
++.||.|++||+.+.+. +..+. .+...+..++|+|++.++++. .+|.|++|++.+++.+.
T Consensus 195 ~~~~~~i~i~d~~~~~~-~~~~~------------------~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~ 255 (289)
T cd00200 195 SSSDGTIKLWDLSTGKC-LGTLR------------------GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQ 255 (289)
T ss_pred ecCCCcEEEEECCCCce-ecchh------------------hcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEE
Confidence 99999999999987543 23321 133468899999988765554 59999999998766433
Q ss_pred ccCCCCCCeEEEEEe
Q 003087 326 ETDPKLRGHVFLLES 340 (849)
Q Consensus 326 ~~~~~~~g~~~~Le~ 340 (849)
. -+.|.+.+..+..
T Consensus 256 ~-~~~~~~~i~~~~~ 269 (289)
T cd00200 256 T-LSGHTNSVTSLAW 269 (289)
T ss_pred E-ccccCCcEEEEEE
Confidence 1 1134444444444
No 26
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=1.5e-22 Score=233.77 Aligned_cols=243 Identities=16% Similarity=0.238 Sum_probs=180.1
Q ss_pred cccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-
Q 003087 7 PRKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN- 84 (849)
Q Consensus 7 ~~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~- 84 (849)
+.+...|..++|||||++|++++ |.+|+||+...+ +....++. .|...|.+++|+|+|++++||+.|++|||||+.
T Consensus 200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~-~~~~~~l~-gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~ 277 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD-GRNLKTLK-GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT 277 (456)
T ss_pred cccccceeeeEECCCCcEEEEecCCceEEEeeccCC-CeEEEEec-CCCCceEEEEecCCCCEEEEecCCCcEEEEeccC
Confidence 34567899999999999999998 579999998432 22233333 236788999999999999999999999999998
Q ss_pred CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCc--ccccccccCCcceeccccCC-
Q 003087 85 GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSA--SISSASASSSGLTLRRQFPQ- 161 (849)
Q Consensus 85 g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~--~~~~~~~~~~~~~l~~~~~~- 161 (849)
|+....+..|. ..|.+++|++++.. ++++++||+|++||+.++... .. +.++...
T Consensus 278 ~~~~~~l~~hs----~~is~~~f~~d~~~-------l~s~s~d~~i~vwd~~~~~~~~~~~-----------~~~~~~~~ 335 (456)
T KOG0266|consen 278 GECVRKLKGHS----DGISGLAFSPDGNL-------LVSASYDGTIRVWDLETGSKLCLKL-----------LSGAENSA 335 (456)
T ss_pred CeEEEeeeccC----CceEEEEECCCCCE-------EEEcCCCccEEEEECCCCceeeeec-----------ccCCCCCC
Confidence 56655554443 57999999987654 444589999999999987732 21 2222222
Q ss_pred ceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCcccc---ccceEEEc
Q 003087 162 NVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQL---AHPKVLIS 238 (849)
Q Consensus 162 ~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~---~V~~vafS 238 (849)
.++++.|||+|++|++++.|++ +++|++...... +.+ .+ |.. .+++..++
T Consensus 336 ~~~~~~fsp~~~~ll~~~~d~~-------------~~~w~l~~~~~~---------~~~---~~--~~~~~~~~~~~~~~ 388 (456)
T KOG0266|consen 336 PVTSVQFSPNGKYLLSASLDRT-------------LKLWDLRSGKSV---------GTY---TG--HSNLVRCIFSPTLS 388 (456)
T ss_pred ceeEEEECCCCcEEEEecCCCe-------------EEEEEccCCcce---------eee---cc--cCCcceeEeccccc
Confidence 5999999999999999988863 899999864211 111 12 222 45566779
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCC-CCCcEEEEEecCCE-EEEEE--eCCcEE
Q 003087 239 PQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKP-ISDITDFAWWSDNI-LILAR--KSSIIT 314 (849)
Q Consensus 239 PDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~vaws~D~~-la~a~--~dgti~ 314 (849)
++|+++.+++.|+.|.+|++.++.. +.... +| ...+.+++|.+... +++++ .|+.++
T Consensus 389 ~~~~~i~sg~~d~~v~~~~~~s~~~-~~~l~------------------~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~ 449 (456)
T KOG0266|consen 389 TGGKLIYSGSEDGSVYVWDSSSGGI-LQRLE------------------GHSKAAVSDLSSHPTENLIASSSFEGDGLIR 449 (456)
T ss_pred CCCCeEEEEeCCceEEEEeCCccch-hhhhc------------------CCCCCceeccccCCCcCeeeecCcCCCceEE
Confidence 9999999999999999999997533 22322 23 45678899999765 45555 688999
Q ss_pred EEEec
Q 003087 315 MIDVL 319 (849)
Q Consensus 315 lwdl~ 319 (849)
+|...
T Consensus 450 ~w~~~ 454 (456)
T KOG0266|consen 450 LWKYD 454 (456)
T ss_pred EecCC
Confidence 99754
No 27
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.90 E-value=1.9e-23 Score=225.80 Aligned_cols=252 Identities=14% Similarity=0.188 Sum_probs=189.9
Q ss_pred cccceEEEEEcC-CCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-C
Q 003087 9 KTKKQVSLFISP-RGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-G 85 (849)
Q Consensus 9 ~~~~v~slafSP-dG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g 85 (849)
+++.|.++.|.| .|.+|++++ |+.|+||+.-++ +..+.++.. |...|+.++||++|+.+.|++-|++|++||+. |
T Consensus 213 H~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~-~~~lrtf~g-H~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG 290 (503)
T KOG0282|consen 213 HTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD-RRCLRTFKG-HRKPVRDASFNNCGTSFLSASFDRFLKLWDTETG 290 (503)
T ss_pred CccccchhhhccceeeEEEecCCCceEEEEEEecC-cceehhhhc-chhhhhhhhccccCCeeeeeecceeeeeeccccc
Confidence 558899999999 999999998 789999997653 334444543 36789999999999999999999999999996 7
Q ss_pred ccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEE
Q 003087 86 EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVIC 165 (849)
Q Consensus 86 ~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~s 165 (849)
+++.++... ..+..|-|.|+.. +.|++++.|+.|+.||+..++..+.|. +|-..|++
T Consensus 291 ~~~~~f~~~-----~~~~cvkf~pd~~------n~fl~G~sd~ki~~wDiRs~kvvqeYd------------~hLg~i~~ 347 (503)
T KOG0282|consen 291 QVLSRFHLD-----KVPTCVKFHPDNQ------NIFLVGGSDKKIRQWDIRSGKVVQEYD------------RHLGAILD 347 (503)
T ss_pred eEEEEEecC-----CCceeeecCCCCC------cEEEEecCCCcEEEEeccchHHHHHHH------------hhhhheee
Confidence 776666432 3567889988651 247888999999999999988766554 44457999
Q ss_pred EEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCccc-------------------ceecccc----cee--
Q 003087 166 TDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQ-------------------LYTTQIE----GLY-- 220 (849)
Q Consensus 166 vafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~-------------------l~~~~~~----~~~-- 220 (849)
+.|-|+|+.+++++.|++ +++|+...+..... .+..|.. ..|
T Consensus 348 i~F~~~g~rFissSDdks-------------~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~ 414 (503)
T KOG0282|consen 348 ITFVDEGRRFISSSDDKS-------------VRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFST 414 (503)
T ss_pred eEEccCCceEeeeccCcc-------------EEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEec
Confidence 999999999999988864 77887644321111 1111111 111
Q ss_pred ---------eccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCC
Q 003087 221 ---------CEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPIS 291 (849)
Q Consensus 221 ---------~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (849)
..++|+.-.+.-..|.|||||.+|+||+.||.+.+||..+-.. +.++. .|..
T Consensus 415 ~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl-~~~lk------------------ah~~ 475 (503)
T KOG0282|consen 415 VPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKL-VSKLK------------------AHDQ 475 (503)
T ss_pred ccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhh-hhccc------------------cCCc
Confidence 1244522223445789999999999999999999999997643 45544 3446
Q ss_pred CcEEEEEecCC--EEEEEEeCCcEEEEE
Q 003087 292 DITDFAWWSDN--ILILARKSSIITMID 317 (849)
Q Consensus 292 ~v~~vaws~D~--~la~a~~dgti~lwd 317 (849)
.+..+.|.|.. .+|+++.||.|+||+
T Consensus 476 ~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 476 PCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ceEEEEecCCCcceeEecccCceeEecC
Confidence 78899999964 699999999999996
No 28
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2e-22 Score=204.30 Aligned_cols=225 Identities=18% Similarity=0.212 Sum_probs=151.1
Q ss_pred ccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Ccc
Q 003087 10 TKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEE 87 (849)
Q Consensus 10 ~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~ 87 (849)
.+.|.+|||||.|++||+|| |.++.||...++.-....++.. +...|.+||||++|.+||+++.|..|-||.+. +.+
T Consensus 61 krsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEG-HEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE 139 (312)
T KOG0645|consen 61 KRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEG-HENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE 139 (312)
T ss_pred hheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeec-cccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc
Confidence 35799999999999999999 7899999866542222223322 36789999999999999999999999999997 332
Q ss_pred ---ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCC-CcccccccccCCcceeccccCCce
Q 003087 88 ---ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDP-SASISSASASSSGLTLRRQFPQNV 163 (849)
Q Consensus 88 ---~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~V 163 (849)
+..+.+|. ..|-.++|.|.... ++++|||.+|++|.-..+. -... .+|.|| .+.|
T Consensus 140 fec~aVL~~Ht----qDVK~V~WHPt~dl-------L~S~SYDnTIk~~~~~~dddW~c~---------~tl~g~-~~TV 198 (312)
T KOG0645|consen 140 FECIAVLQEHT----QDVKHVIWHPTEDL-------LFSCSYDNTIKVYRDEDDDDWECV---------QTLDGH-ENTV 198 (312)
T ss_pred EEEEeeecccc----ccccEEEEcCCcce-------eEEeccCCeEEEEeecCCCCeeEE---------EEecCc-cceE
Confidence 33444432 35778899885444 4456999999999876322 1111 245544 4579
Q ss_pred EEEEEcCCCceEEEEecCCCCcccc--C--C--CCCCceeeEEEecCC------cCcccce-ecc--cccee----eccC
Q 003087 164 ICTDYHPELSLLSVVSNTDTSSLTS--S--G--NSGPCCISLWRRCHN------LELEQLY-TTQ--IEGLY----CEPK 224 (849)
Q Consensus 164 ~svafsPdg~lLas~g~d~t~~~~~--~--~--~~G~~~I~lW~~~~~------~~~~~l~-~~~--~~~~~----~~~~ 224 (849)
++++|+|.|..|++++.|+|++||. . + .++....--|. ++. .+.-.++ ... .+..+ ...+
T Consensus 199 W~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~ 277 (312)
T KOG0645|consen 199 WSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWD-NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEG 277 (312)
T ss_pred EEEEecCCCceEEEecCCcceEeeeeccCcchhcccceEeeeec-ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhc
Confidence 9999999999999999999877763 1 1 11110111233 110 0000010 000 00011 1112
Q ss_pred CCccccccceEEEccC-CCEEEEEeCCCcEEEEecC
Q 003087 225 GHEVQLAHPKVLISPQ-GKFVATSDTNGCLYIFEMD 259 (849)
Q Consensus 225 g~~h~~~V~~vafSPD-G~~LAs~s~Dgtv~LWd~~ 259 (849)
. |...|++|+|.|. +++|+|++.||+|++|.+.
T Consensus 278 a--He~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 278 A--HEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred c--cccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 2 8889999999995 8899999999999999864
No 29
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.90 E-value=4.5e-22 Score=214.33 Aligned_cols=238 Identities=15% Similarity=0.256 Sum_probs=179.0
Q ss_pred ccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCc
Q 003087 8 RKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGE 86 (849)
Q Consensus 8 ~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~ 86 (849)
.++++|.+|.|+-+|.||++++ |++++|||...+ .....+..+ ...-..|.|- +..-.|+.+.||.|+|..+.++
T Consensus 274 ~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g--~~~q~f~~~-s~~~lDVdW~-~~~~F~ts~td~~i~V~kv~~~ 349 (524)
T KOG0273|consen 274 QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG--TVKQQFEFH-SAPALDVDWQ-SNDEFATSSTDGCIHVCKVGED 349 (524)
T ss_pred ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc--eEEEeeeec-cCCccceEEe-cCceEeecCCCceEEEEEecCC
Confidence 4668999999999999999998 899999997643 222233332 2222457776 4456889999999999999754
Q ss_pred -cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEE
Q 003087 87 -EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVIC 165 (849)
Q Consensus 87 -~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~s 165 (849)
...++.+|| ..|.+|-|.|.+.++. ++|+|||+++|+...+.+..- |. .|...|.+
T Consensus 350 ~P~~t~~GH~----g~V~alk~n~tg~LLa-------S~SdD~TlkiWs~~~~~~~~~-----------l~-~Hskei~t 406 (524)
T KOG0273|consen 350 RPVKTFIGHH----GEVNALKWNPTGSLLA-------SCSDDGTLKIWSMGQSNSVHD-----------LQ-AHSKEIYT 406 (524)
T ss_pred Ccceeeeccc----CceEEEEECCCCceEE-------EecCCCeeEeeecCCCcchhh-----------hh-hhccceee
Confidence 455666655 4689999999776644 459999999999876555332 33 34557999
Q ss_pred EEEcCCCc---------eEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEE
Q 003087 166 TDYHPELS---------LLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVL 236 (849)
Q Consensus 166 vafsPdg~---------lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~va 236 (849)
+.|||+|. .||+++.|+| |++|++..+. ++. .+.+ |+.+|++|+
T Consensus 407 ~~wsp~g~v~~n~~~~~~l~sas~dst-------------V~lwdv~~gv---~i~---------~f~k--H~~pVysva 459 (524)
T KOG0273|consen 407 IKWSPTGPVTSNPNMNLMLASASFDST-------------VKLWDVESGV---PIH---------TLMK--HQEPVYSVA 459 (524)
T ss_pred EeecCCCCccCCCcCCceEEEeecCCe-------------EEEEEccCCc---eeE---------eecc--CCCceEEEE
Confidence 99999865 5788888874 8999998752 221 2233 899999999
Q ss_pred EccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCC-EEEEEEeCCcEEE
Q 003087 237 ISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDN-ILILARKSSIITM 315 (849)
Q Consensus 237 fSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~-~la~a~~dgti~l 315 (849)
|||||++||+|+.||.|.||++++... .+... ..+.|.++.|+.+| .|..+..||.+.+
T Consensus 460 fS~~g~ylAsGs~dg~V~iws~~~~~l-~~s~~-------------------~~~~Ifel~Wn~~G~kl~~~~sd~~vcv 519 (524)
T KOG0273|consen 460 FSPNGRYLASGSLDGCVHIWSTKTGKL-VKSYQ-------------------GTGGIFELCWNAAGDKLGACASDGSVCV 519 (524)
T ss_pred ecCCCcEEEecCCCCeeEeccccchhe-eEeec-------------------CCCeEEEEEEcCCCCEEEEEecCCCceE
Confidence 999999999999999999999998743 33332 23558999999876 4666778999999
Q ss_pred EEec
Q 003087 316 IDVL 319 (849)
Q Consensus 316 wdl~ 319 (849)
.|+.
T Consensus 520 ldlr 523 (524)
T KOG0273|consen 520 LDLR 523 (524)
T ss_pred EEec
Confidence 8874
No 30
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.90 E-value=8.2e-22 Score=243.07 Aligned_cols=244 Identities=10% Similarity=0.090 Sum_probs=176.8
Q ss_pred ccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCC--Ccc--eeeeeecCCCCEEEEEECC-CCCEEEEEeCCCcEEEEec
Q 003087 10 TKKQVSLFISPRGERVAVAA-VNQVTILQKDDDY--QEP--CGIFNCTGLGASIYGAWSE-SHDVLGIVDDTHTVYFFKA 83 (849)
Q Consensus 10 ~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~--~~~--~~~~~~~~~~~v~~vafSP-DG~~LAs~~~dgtIrlWd~ 83 (849)
.+.|.+++|+|||++||+|+ |++|+||+..... +.. .......++..+.+++|+| ++++||+++.||+|+|||+
T Consensus 483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~ 562 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDV 562 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEEC
Confidence 46799999999999999998 6899999864210 000 0011122356789999987 5899999999999999998
Q ss_pred C-CccceecccccccccccEEEEEecC-CcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCC
Q 003087 84 N-GEEITRFTNKHLKVSLPIIGLIAQD-ETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQ 161 (849)
Q Consensus 84 ~-g~~~~~l~~~~~~~~~~V~~l~fs~-~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (849)
. ++.+..+..| ...|.+++|+| ++. .|++++.||+|++||+.++..... +. + ..
T Consensus 563 ~~~~~~~~~~~H----~~~V~~l~~~p~~~~-------~L~Sgs~Dg~v~iWd~~~~~~~~~-----------~~-~-~~ 618 (793)
T PLN00181 563 ARSQLVTEMKEH----EKRVWSIDYSSADPT-------LLASGSDDGSVKLWSINQGVSIGT-----------IK-T-KA 618 (793)
T ss_pred CCCeEEEEecCC----CCCEEEEEEcCCCCC-------EEEEEcCCCEEEEEECCCCcEEEE-----------Ee-c-CC
Confidence 7 5555555443 35799999986 432 366679999999999986554222 22 2 23
Q ss_pred ceEEEEEc-CCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccC
Q 003087 162 NVICTDYH-PELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQ 240 (849)
Q Consensus 162 ~V~svafs-Pdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPD 240 (849)
.|.++.|+ ++|.+||+|+.|+ .|++||+..... .+. ...+ |...|..++|+ +
T Consensus 619 ~v~~v~~~~~~g~~latgs~dg-------------~I~iwD~~~~~~--~~~---------~~~~--h~~~V~~v~f~-~ 671 (793)
T PLN00181 619 NICCVQFPSESGRSLAFGSADH-------------KVYYYDLRNPKL--PLC---------TMIG--HSKTVSYVRFV-D 671 (793)
T ss_pred CeEEEEEeCCCCCEEEEEeCCC-------------eEEEEECCCCCc--cce---------EecC--CCCCEEEEEEe-C
Confidence 59999995 5799999998886 389999865310 111 1124 78899999997 8
Q ss_pred CCEEEEEeCCCcEEEEecCCCcc-----cccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEE
Q 003087 241 GKFVATSDTNGCLYIFEMDKDNF-----SLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIIT 314 (849)
Q Consensus 241 G~~LAs~s~Dgtv~LWd~~~~~~-----~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~ 314 (849)
|+.|+|++.||+|+|||+..... .+..+ .+|...+..++|++++. +++|+.||+|.
T Consensus 672 ~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~------------------~gh~~~i~~v~~s~~~~~lasgs~D~~v~ 733 (793)
T PLN00181 672 SSTLVSSSTDNTLKLWDLSMSISGINETPLHSF------------------MGHTNVKNFVGLSVSDGYIATGSETNEVF 733 (793)
T ss_pred CCEEEEEECCCEEEEEeCCCCccccCCcceEEE------------------cCCCCCeeEEEEcCCCCEEEEEeCCCEEE
Confidence 99999999999999999974310 01111 13455678899999775 77899999999
Q ss_pred EEEecCCc
Q 003087 315 MIDVLSGL 322 (849)
Q Consensus 315 lwdl~~~~ 322 (849)
||+.....
T Consensus 734 iw~~~~~~ 741 (793)
T PLN00181 734 VYHKAFPM 741 (793)
T ss_pred EEECCCCC
Confidence 99976553
No 31
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.90 E-value=5.4e-23 Score=213.51 Aligned_cols=250 Identities=14% Similarity=0.185 Sum_probs=183.1
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cccc
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEI 88 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~ 88 (849)
+.|+.|.+. .+.+++|. |++|+|||..+-. ...++. ++.+.|.++.| |.+.|+||++|.||+|||++ |+.+
T Consensus 198 kgVYClQYD--D~kiVSGlrDnTikiWD~n~~~--c~~~L~-GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l 270 (499)
T KOG0281|consen 198 KGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLE--CLKILT-GHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPL 270 (499)
T ss_pred CceEEEEec--chhhhcccccCceEEeccccHH--HHHhhh-cCCCcEEeeec--cceEEEecCCCceEEEEeccCCchh
Confidence 678888774 44566887 8999999975421 111222 34778888887 67899999999999999997 6666
Q ss_pred eecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEE
Q 003087 89 TRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDY 168 (849)
Q Consensus 89 ~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svaf 168 (849)
.++-.|- .+|..+.|+.+ .+.+++.|.++.+|+......... . .-|. +|...|+.|.|
T Consensus 271 ~tlihHc----eaVLhlrf~ng---------~mvtcSkDrsiaVWdm~sps~it~-r-------rVLv-GHrAaVNvVdf 328 (499)
T KOG0281|consen 271 NTLIHHC----EAVLHLRFSNG---------YMVTCSKDRSIAVWDMASPTDITL-R-------RVLV-GHRAAVNVVDF 328 (499)
T ss_pred hHHhhhc----ceeEEEEEeCC---------EEEEecCCceeEEEeccCchHHHH-H-------HHHh-hhhhheeeecc
Confidence 6654332 47889998763 366779999999999865332111 0 1133 44567999999
Q ss_pred cCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEe
Q 003087 169 HPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSD 248 (849)
Q Consensus 169 sPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s 248 (849)
+. ++++++|+|.| |++|++.+.. +++...| |+.+|-++.+ .|++++|||
T Consensus 329 d~--kyIVsASgDRT-------------ikvW~~st~e------------fvRtl~g--HkRGIAClQY--r~rlvVSGS 377 (499)
T KOG0281|consen 329 DD--KYIVSASGDRT-------------IKVWSTSTCE------------FVRTLNG--HKRGIACLQY--RDRLVVSGS 377 (499)
T ss_pred cc--ceEEEecCCce-------------EEEEecccee------------eehhhhc--ccccceehhc--cCeEEEecC
Confidence 75 59999999985 8999987642 2233456 8889999999 999999999
Q ss_pred CCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecCCccc----
Q 003087 249 TNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSGLKV---- 324 (849)
Q Consensus 249 ~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~~~~l---- 324 (849)
.|.||+|||+..+.+ +..+.. |..-|..|.| .+.+|++|..||+|+|||+.++..-
T Consensus 378 SDntIRlwdi~~G~c-LRvLeG------------------HEeLvRciRF-d~krIVSGaYDGkikvWdl~aaldpra~~ 437 (499)
T KOG0281|consen 378 SDNTIRLWDIECGAC-LRVLEG------------------HEELVRCIRF-DNKRIVSGAYDGKIKVWDLQAALDPRAPA 437 (499)
T ss_pred CCceEEEEeccccHH-HHHHhc------------------hHHhhhheee-cCceeeeccccceEEEEecccccCCcccc
Confidence 999999999998876 555442 3345778888 6678999999999999999887522
Q ss_pred ----cccCCCCCCeEEEEEe
Q 003087 325 ----KETDPKLRGHVFLLES 340 (849)
Q Consensus 325 ----~~~~~~~~g~~~~Le~ 340 (849)
+-+.-.|.|++|-|.-
T Consensus 438 ~~~Cl~~lv~hsgRVFrLQF 457 (499)
T KOG0281|consen 438 STLCLRTLVEHSGRVFRLQF 457 (499)
T ss_pred cchHHHhhhhccceeEEEee
Confidence 1112256788887765
No 32
>PTZ00421 coronin; Provisional
Probab=99.89 E-value=2.1e-21 Score=224.39 Aligned_cols=246 Identities=9% Similarity=0.040 Sum_probs=166.0
Q ss_pred cceEEEEEcCCCCeEEEEeCC-eEEEEecCCCC--------Cccee---eeeecCCCCEEEEEECC-CCCEEEEEeCCCc
Q 003087 11 KKQVSLFISPRGERVAVAAVN-QVTILQKDDDY--------QEPCG---IFNCTGLGASIYGAWSE-SHDVLGIVDDTHT 77 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~~-~i~iw~~~~~~--------~~~~~---~~~~~~~~~v~~vafSP-DG~~LAs~~~dgt 77 (849)
..|....++|||..+++++++ .+..|+..++. ++... .+ ..|.+.|.+++||| |+++||+|+.||+
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l-~GH~~~V~~v~fsP~d~~~LaSgS~Dgt 99 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPIL-LGQEGPIIDVAFNPFDPQKLFTASEDGT 99 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceE-eCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence 556667788887666666544 44566543321 11000 11 12367899999999 9999999999999
Q ss_pred EEEEecCCc--------cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCccccccccc
Q 003087 78 VYFFKANGE--------EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASAS 149 (849)
Q Consensus 78 IrlWd~~g~--------~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~ 149 (849)
|++||+... .+..+.+| ...|.+|+|+|+.. +.|++++.||+|++||+.++....
T Consensus 100 IkIWdi~~~~~~~~~~~~l~~L~gH----~~~V~~l~f~P~~~------~iLaSgs~DgtVrIWDl~tg~~~~------- 162 (493)
T PTZ00421 100 IMGWGIPEEGLTQNISDPIVHLQGH----TKKVGIVSFHPSAM------NVLASAGADMVVNVWDVERGKAVE------- 162 (493)
T ss_pred EEEEecCCCccccccCcceEEecCC----CCcEEEEEeCcCCC------CEEEEEeCCCEEEEEECCCCeEEE-------
Confidence 999998632 22333332 36799999988531 136677999999999998765432
Q ss_pred CCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccc
Q 003087 150 SSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQ 229 (849)
Q Consensus 150 ~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~ 229 (849)
.+. .|...|++++|+|||++||+++.|++ |++||+..+. .+.. ..+ |.
T Consensus 163 ----~l~-~h~~~V~sla~spdG~lLatgs~Dg~-------------IrIwD~rsg~---~v~t---------l~~--H~ 210 (493)
T PTZ00421 163 ----VIK-CHSDQITSLEWNLDGSLLCTTSKDKK-------------LNIIDPRDGT---IVSS---------VEA--HA 210 (493)
T ss_pred ----EEc-CCCCceEEEEEECCCCEEEEecCCCE-------------EEEEECCCCc---EEEE---------Eec--CC
Confidence 233 34567999999999999999998873 8999987642 1111 122 44
Q ss_pred cc-cceEEEccCCCEEEEEeC----CCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-
Q 003087 230 LA-HPKVLISPQGKFVATSDT----NGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI- 303 (849)
Q Consensus 230 ~~-V~~vafSPDG~~LAs~s~----Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~- 303 (849)
.. +..+.|+|++..|++++. ||+|+|||+.+....+.... ......+....|++|+.
T Consensus 211 ~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~-----------------~d~~~~~~~~~~d~d~~~ 273 (493)
T PTZ00421 211 SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD-----------------LDQSSALFIPFFDEDTNL 273 (493)
T ss_pred CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec-----------------cCCCCceEEEEEcCCCCE
Confidence 43 347889999998888764 78999999986532111111 01113345567888875
Q ss_pred EEEEE-eCCcEEEEEecCCcc
Q 003087 304 LILAR-KSSIITMIDVLSGLK 323 (849)
Q Consensus 304 la~a~-~dgti~lwdl~~~~~ 323 (849)
+++++ .||+|++||+.+++.
T Consensus 274 L~lggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 274 LYIGSKGEGNIRCFELMNERL 294 (493)
T ss_pred EEEEEeCCCeEEEEEeeCCce
Confidence 55666 499999999998774
No 33
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2.4e-22 Score=210.63 Aligned_cols=240 Identities=11% Similarity=0.151 Sum_probs=182.6
Q ss_pred cccccceEEEEEcCCCCeEEEEeCC-eEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-
Q 003087 7 PRKTKKQVSLFISPRGERVAVAAVN-QVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN- 84 (849)
Q Consensus 7 ~~~~~~v~slafSPdG~~LAsas~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~- 84 (849)
..+.+.|.+|+|+.-|++||++|.+ .|++|+.+..+ ..+.. ..++...|.+|+|-|-|.+|+|++.|.||+.|+..
T Consensus 147 rGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~-~c~ks-~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~t 224 (406)
T KOG0295|consen 147 RGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFF-RCIKS-LIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDT 224 (406)
T ss_pred hccccceeEEEEecCccEEEecCCccchhheeHHHHH-HHHHH-hcCcccceeeEEEEecCCeeeecccccceeEEeccc
Confidence 3456789999999999999999865 59999965321 11111 11224567899999999999999999999999996
Q ss_pred CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceE
Q 003087 85 GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVI 164 (849)
Q Consensus 85 g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~ 164 (849)
|-++.++.+|. ..|..+...-|+...+ +++.|.+|++|-+.++.+...+ + .|...|-
T Consensus 225 g~cv~t~~~h~----ewvr~v~v~~DGti~A-------s~s~dqtl~vW~~~t~~~k~~l-----------R-~hEh~vE 281 (406)
T KOG0295|consen 225 GYCVKTFPGHS----EWVRMVRVNQDGTIIA-------SCSNDQTLRVWVVATKQCKAEL-----------R-EHEHPVE 281 (406)
T ss_pred ceeEEeccCch----HhEEEEEecCCeeEEE-------ecCCCceEEEEEeccchhhhhh-----------h-ccccceE
Confidence 77888887654 3688788776776544 4599999999999887654432 2 3455789
Q ss_pred EEEEcCCC---------------ceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccc
Q 003087 165 CTDYHPEL---------------SLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQ 229 (849)
Q Consensus 165 svafsPdg---------------~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~ 229 (849)
+++|-|+. +.+.+++.|+ +|++|++..+.. +....| |.
T Consensus 282 ci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk-------------tIk~wdv~tg~c------------L~tL~g--hd 334 (406)
T KOG0295|consen 282 CIAWAPESSYPSISEATGSTNGGQVLGSGSRDK-------------TIKIWDVSTGMC------------LFTLVG--HD 334 (406)
T ss_pred EEEecccccCcchhhccCCCCCccEEEeecccc-------------eEEEEeccCCeE------------EEEEec--cc
Confidence 99997742 4666777776 499999987632 223356 99
Q ss_pred cccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCC-EEEEEE
Q 003087 230 LAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDN-ILILAR 308 (849)
Q Consensus 230 ~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~-~la~a~ 308 (849)
.+|..++|||-|++|+|...|++|++||+.+++| .+.+..+ ..-|.++.|..+. .+++|+
T Consensus 335 nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~c-mk~~~ah------------------~hfvt~lDfh~~~p~VvTGs 395 (406)
T KOG0295|consen 335 NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQC-MKTLEAH------------------EHFVTSLDFHKTAPYVVTGS 395 (406)
T ss_pred ceeeeeEEcCCCeEEEEEecCCcEEEEEecccee-eeccCCC------------------cceeEEEecCCCCceEEecc
Confidence 9999999999999999999999999999999987 5666532 2336777776554 477899
Q ss_pred eCCcEEEEE
Q 003087 309 KSSIITMID 317 (849)
Q Consensus 309 ~dgti~lwd 317 (849)
-|.++++|-
T Consensus 396 Vdqt~KvwE 404 (406)
T KOG0295|consen 396 VDQTVKVWE 404 (406)
T ss_pred ccceeeeee
Confidence 999999995
No 34
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.89 E-value=1.7e-21 Score=199.27 Aligned_cols=243 Identities=12% Similarity=0.128 Sum_probs=183.1
Q ss_pred cccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCC--CCc-ceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEe
Q 003087 7 PRKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDD--YQE-PCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFK 82 (849)
Q Consensus 7 ~~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~--~~~-~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd 82 (849)
|-+-.+|-..||||.|+++|.|+ |+...|+++... .+. +..+....|.+.+.+..|-+|++ |.+++.|.|.-+||
T Consensus 94 pl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~-ilT~SGD~TCalWD 172 (343)
T KOG0286|consen 94 PLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH-ILTGSGDMTCALWD 172 (343)
T ss_pred ecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc-eEecCCCceEEEEE
Confidence 44557889999999999999998 887788876522 111 11111122356678899998776 66889999999999
Q ss_pred cC-CccceecccccccccccEEEEEecC-CcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccC
Q 003087 83 AN-GEEITRFTNKHLKVSLPIIGLIAQD-ETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFP 160 (849)
Q Consensus 83 ~~-g~~~~~l~~~~~~~~~~V~~l~fs~-~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (849)
+. |+++..+.+|. ..|.+|.++| +. +.|++++-|++.++||+..+.+.+. |.| |.
T Consensus 173 ie~g~~~~~f~GH~----gDV~slsl~p~~~-------ntFvSg~cD~~aklWD~R~~~c~qt-----------F~g-he 229 (343)
T KOG0286|consen 173 IETGQQTQVFHGHT----GDVMSLSLSPSDG-------NTFVSGGCDKSAKLWDVRSGQCVQT-----------FEG-HE 229 (343)
T ss_pred cccceEEEEecCCc----ccEEEEecCCCCC-------CeEEecccccceeeeeccCcceeEe-----------ecc-cc
Confidence 97 77777776554 4689999988 32 2478889999999999998776544 344 45
Q ss_pred CceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccC
Q 003087 161 QNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQ 240 (849)
Q Consensus 161 ~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPD 240 (849)
..|++|.|+|+|--+|+|+.|+| .+++|+.....+. +|+. .. --.+|.+|+||--
T Consensus 230 sDINsv~ffP~G~afatGSDD~t-------------cRlyDlRaD~~~a---------~ys~-~~--~~~gitSv~FS~S 284 (343)
T KOG0286|consen 230 SDINSVRFFPSGDAFATGSDDAT-------------CRLYDLRADQELA---------VYSH-DS--IICGITSVAFSKS 284 (343)
T ss_pred cccceEEEccCCCeeeecCCCce-------------eEEEeecCCcEEe---------eecc-Cc--ccCCceeEEEccc
Confidence 67999999999999999988864 7999987642211 1211 11 2348999999999
Q ss_pred CCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEE
Q 003087 241 GKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMID 317 (849)
Q Consensus 241 G~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwd 317 (849)
|++|.++..|.++.+||.-.++. ...+. +|.+.|..+.-+|||. +++|+.|.+++||.
T Consensus 285 GRlLfagy~d~~c~vWDtlk~e~-vg~L~------------------GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 285 GRLLFAGYDDFTCNVWDTLKGER-VGVLA------------------GHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ccEEEeeecCCceeEeeccccce-EEEee------------------ccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999999876543 22222 4668899999999995 78999999999994
No 35
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.89 E-value=3.1e-21 Score=237.98 Aligned_cols=254 Identities=14% Similarity=0.124 Sum_probs=177.8
Q ss_pred cceEEEEEcC-CCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECC-CCCEEEEEeCCCcEEEEecC-Cc
Q 003087 11 KKQVSLFISP-RGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSE-SHDVLGIVDDTHTVYFFKAN-GE 86 (849)
Q Consensus 11 ~~v~slafSP-dG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSP-DG~~LAs~~~dgtIrlWd~~-g~ 86 (849)
..|.+++|+| ++++||+++ |++|+|||...+ ..+..+. .+.+.|++++|+| ||.+||+|+.||+|++||+. +.
T Consensus 533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~--~~~~~~~-~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~ 609 (793)
T PLN00181 533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARS--QLVTEMK-EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV 609 (793)
T ss_pred CceeeEEeccCCCCEEEEEeCCCeEEEEECCCC--eEEEEec-CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc
Confidence 5678999987 478999997 789999997642 3333332 2367899999997 89999999999999999997 55
Q ss_pred cceecccccccccccEEEEEecC-CcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQD-ETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVIC 165 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~-~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~s 165 (849)
.+..+.. + ..|.++.|++ ++. .|++++.||+|++||+..+... . .++. +|...|.+
T Consensus 610 ~~~~~~~-~----~~v~~v~~~~~~g~-------~latgs~dg~I~iwD~~~~~~~-~---------~~~~-~h~~~V~~ 666 (793)
T PLN00181 610 SIGTIKT-K----ANICCVQFPSESGR-------SLAFGSADHKVYYYDLRNPKLP-L---------CTMI-GHSKTVSY 666 (793)
T ss_pred EEEEEec-C----CCeEEEEEeCCCCC-------EEEEEeCCCeEEEEECCCCCcc-c---------eEec-CCCCCEEE
Confidence 5444432 1 3588888854 332 3677799999999999764421 1 1233 34567999
Q ss_pred EEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEE
Q 003087 166 TDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVA 245 (849)
Q Consensus 166 vafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LA 245 (849)
+.|+ ++..|+++|.|++ |++|++....... ....+..+.| |...+..++|+|+|++||
T Consensus 667 v~f~-~~~~lvs~s~D~~-------------ikiWd~~~~~~~~------~~~~l~~~~g--h~~~i~~v~~s~~~~~la 724 (793)
T PLN00181 667 VRFV-DSSTLVSSSTDNT-------------LKLWDLSMSISGI------NETPLHSFMG--HTNVKNFVGLSVSDGYIA 724 (793)
T ss_pred EEEe-CCCEEEEEECCCE-------------EEEEeCCCCcccc------CCcceEEEcC--CCCCeeEEEEcCCCCEEE
Confidence 9997 7888999998863 8999986431100 0011223445 888999999999999999
Q ss_pred EEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEe
Q 003087 246 TSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDV 318 (849)
Q Consensus 246 s~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl 318 (849)
+++.||+|+||+...... +..+.... ..++. .+.. ..+...|.+++|+|++. +++|+.||+|+||++
T Consensus 725 sgs~D~~v~iw~~~~~~~-~~s~~~~~--~~~~~-~~~~--~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 725 TGSETNEVFVYHKAFPMP-VLSYKFKT--IDPVS-GLEV--DDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEeCCCEEEEEECCCCCc-eEEEeccc--CCccc-cccc--CCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 999999999999875432 22221100 00000 0000 12334689999999985 778899999999996
No 36
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.88 E-value=1.5e-20 Score=197.28 Aligned_cols=236 Identities=15% Similarity=0.221 Sum_probs=176.1
Q ss_pred ccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Ccc
Q 003087 10 TKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEE 87 (849)
Q Consensus 10 ~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~ 87 (849)
...+..+.|+|+|++|++++ ++.|.+|+...+ .....+.. +...+.+++|+|+++++++++.||.|++||+. ++.
T Consensus 51 ~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~--~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 127 (289)
T cd00200 51 TGPVRDVAASADGTYLASGSSDKTIRLWDLETG--ECVRTLTG-HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC 127 (289)
T ss_pred CcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc--cceEEEec-cCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE
Confidence 35678999999999999997 789999997642 22333332 24578999999999999999999999999997 665
Q ss_pred ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEE
Q 003087 88 ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTD 167 (849)
Q Consensus 88 ~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sva 167 (849)
...+..+ ...|.++.|+|++. .+++.+.||.|++|++.++..... +. .+...|.+++
T Consensus 128 ~~~~~~~----~~~i~~~~~~~~~~-------~l~~~~~~~~i~i~d~~~~~~~~~-----------~~-~~~~~i~~~~ 184 (289)
T cd00200 128 LTTLRGH----TDWVNSVAFSPDGT-------FVASSSQDGTIKLWDLRTGKCVAT-----------LT-GHTGEVNSVA 184 (289)
T ss_pred EEEeccC----CCcEEEEEEcCcCC-------EEEEEcCCCcEEEEEcccccccee-----------Ee-cCccccceEE
Confidence 5555432 24688999988632 133445599999999976554322 22 3344699999
Q ss_pred EcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEE
Q 003087 168 YHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATS 247 (849)
Q Consensus 168 fsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~ 247 (849)
|+|+|+.+++++.++ .|++|++.... .+. ...+ |...+.+++|+|++.+++++
T Consensus 185 ~~~~~~~l~~~~~~~-------------~i~i~d~~~~~---~~~---------~~~~--~~~~i~~~~~~~~~~~~~~~ 237 (289)
T cd00200 185 FSPDGEKLLSSSSDG-------------TIKLWDLSTGK---CLG---------TLRG--HENGVNSVAFSPDGYLLASG 237 (289)
T ss_pred ECCCcCEEEEecCCC-------------cEEEEECCCCc---eec---------chhh--cCCceEEEEEcCCCcEEEEE
Confidence 999999998888765 38999987532 111 1112 66789999999999999999
Q ss_pred eCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCC-EEEEEEeCCcEEEEE
Q 003087 248 DTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDN-ILILARKSSIITMID 317 (849)
Q Consensus 248 s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~-~la~a~~dgti~lwd 317 (849)
+.||.|++|++.+.+. +..+. .+...+.+++|+|++ .+++++.||.|++|+
T Consensus 238 ~~~~~i~i~~~~~~~~-~~~~~------------------~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 238 SEDGTIRVWDLRTGEC-VQTLS------------------GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cCCCcEEEEEcCCcee-EEEcc------------------ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9999999999986543 22322 233568999999986 577889999999996
No 37
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.88 E-value=1.4e-21 Score=220.19 Aligned_cols=250 Identities=12% Similarity=0.102 Sum_probs=187.0
Q ss_pred cccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeee-cCCCCEEEEEECCCC-CEEEEEeCCCcEEEEec
Q 003087 7 PRKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNC-TGLGASIYGAWSESH-DVLGIVDDTHTVYFFKA 83 (849)
Q Consensus 7 ~~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~-~~~~~v~~vafSPDG-~~LAs~~~dgtIrlWd~ 83 (849)
|.+.+.|.||+.+.+|-+||+|| |++|++|..+++-.+....... .|.+.|.+|++|-.| .++|++|.|+|+++|++
T Consensus 362 ~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l 441 (775)
T KOG0319|consen 362 PGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDL 441 (775)
T ss_pred eCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecC
Confidence 56678899999888899999999 8899999874432211111111 236789999998766 68999999999999998
Q ss_pred CC-cc---ceeccc--ccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceecc
Q 003087 84 NG-EE---ITRFTN--KHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRR 157 (849)
Q Consensus 84 ~g-~~---~~~l~~--~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~ 157 (849)
.+ ++ ...+.. ....+...|++|+.+|+... ++++|.|.+.++|++.+...+. +|+
T Consensus 442 ~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkL-------iAT~SqDktaKiW~le~~~l~~-----------vLs- 502 (775)
T KOG0319|consen 442 PKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKL-------IATGSQDKTAKIWDLEQLRLLG-----------VLS- 502 (775)
T ss_pred CCcccccccceehhhHHHHhhcccccceEecCCCce-------EEecccccceeeecccCceEEE-----------Eee-
Confidence 75 11 011100 00112356889999884433 5667999999999998554433 355
Q ss_pred ccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEE
Q 003087 158 QFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLI 237 (849)
Q Consensus 158 ~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vaf 237 (849)
+|+.+|+||.|+|..+++|++|.|.| |++|.+.+. .+.++ +.| |+..|.+++|
T Consensus 503 GH~RGvw~V~Fs~~dq~laT~SgD~T-------------vKIW~is~f---------SClkT---~eG--H~~aVlra~F 555 (775)
T KOG0319|consen 503 GHTRGVWCVSFSKNDQLLATCSGDKT-------------VKIWSISTF---------SCLKT---FEG--HTSAVLRASF 555 (775)
T ss_pred CCccceEEEEeccccceeEeccCCce-------------EEEEEeccc---------eeeee---ecC--ccceeEeeee
Confidence 45778999999999999999999974 899988763 22233 346 9999999999
Q ss_pred ccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEE
Q 003087 238 SPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMI 316 (849)
Q Consensus 238 SPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lw 316 (849)
=-+|++|+|++.||-|+||++.+..| +.++- .|.+.||.++=+++.. +++|+.||.|.+|
T Consensus 556 ~~~~~qliS~~adGliKlWnikt~eC-~~tlD------------------~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 556 IRNGKQLISAGADGLIKLWNIKTNEC-EMTLD------------------AHNDRVWALSVSPLLDMFVTGGGDGRIIFW 616 (775)
T ss_pred eeCCcEEEeccCCCcEEEEeccchhh-hhhhh------------------hccceeEEEeecCccceeEecCCCeEEEEe
Confidence 99999999999999999999999987 44442 4667899998888764 5678999999999
Q ss_pred EecCC
Q 003087 317 DVLSG 321 (849)
Q Consensus 317 dl~~~ 321 (849)
.=.|.
T Consensus 617 kD~Te 621 (775)
T KOG0319|consen 617 KDVTE 621 (775)
T ss_pred ecCcH
Confidence 74443
No 38
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.88 E-value=5.6e-22 Score=210.36 Aligned_cols=239 Identities=10% Similarity=0.090 Sum_probs=183.8
Q ss_pred ccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Ccc
Q 003087 10 TKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEE 87 (849)
Q Consensus 10 ~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~ 87 (849)
-..|.++.+|+||.++.||. ++.|++|+..-+ -...+..++...|+++||||.....+++++||+|+|||.. .++
T Consensus 138 Ds~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn---nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke 214 (464)
T KOG0284|consen 138 DSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN---NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE 214 (464)
T ss_pred cccceeEEEccCCCEEEEcCCCceEEecccchh---hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch
Confidence 36799999999999999997 579999985421 2222333334789999999999999999999999999975 655
Q ss_pred ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEE
Q 003087 88 ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTD 167 (849)
Q Consensus 88 ~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sva 167 (849)
-..+.+|. ..|.++.+.|.... ++++|.|..|++||..+|.+...+. +|++.|..+.
T Consensus 215 e~vL~GHg----wdVksvdWHP~kgL-------iasgskDnlVKlWDprSg~cl~tlh------------~HKntVl~~~ 271 (464)
T KOG0284|consen 215 ERVLRGHG----WDVKSVDWHPTKGL-------IASGSKDNLVKLWDPRSGSCLATLH------------GHKNTVLAVK 271 (464)
T ss_pred hheeccCC----CCcceeccCCccce-------eEEccCCceeEeecCCCcchhhhhh------------hccceEEEEE
Confidence 45554443 45889999884332 4555899999999999988865433 5678899999
Q ss_pred EcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccC-CCEEEE
Q 003087 168 YHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQ-GKFVAT 246 (849)
Q Consensus 168 fsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPD-G~~LAs 246 (849)
|+|+|.+|+++|.|. .+++.|+....+ + +.++| |.+.|+++.|+|- -.+++|
T Consensus 272 f~~n~N~Llt~skD~-------------~~kv~DiR~mkE---l---------~~~r~--Hkkdv~~~~WhP~~~~lfts 324 (464)
T KOG0284|consen 272 FNPNGNWLLTGSKDQ-------------SCKVFDIRTMKE---L---------FTYRG--HKKDVTSLTWHPLNESLFTS 324 (464)
T ss_pred EcCCCCeeEEccCCc-------------eEEEEehhHhHH---H---------HHhhc--chhhheeeccccccccceee
Confidence 999999999999885 478888764321 1 12345 8999999999995 467889
Q ss_pred EeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCC-EEEEEEeCCcEEEEEec
Q 003087 247 SDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDN-ILILARKSSIITMIDVL 319 (849)
Q Consensus 247 ~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~-~la~a~~dgti~lwdl~ 319 (849)
++.||.|..|.+..... +-..+ ..|...|++++|.|=| .+++|+.|.++++|.-.
T Consensus 325 gg~Dgsvvh~~v~~~~p-~~~i~-----------------~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 325 GGSDGSVVHWVVGLEEP-LGEIP-----------------PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ccCCCceEEEecccccc-ccCCC-----------------cccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 99999999999984432 11111 2466789999999966 46789999999999854
No 39
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.87 E-value=2.9e-21 Score=209.60 Aligned_cols=264 Identities=14% Similarity=0.116 Sum_probs=181.9
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCc--ceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCC
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQE--PCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANG 85 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~--~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g 85 (849)
..+.|.++++.|.|-++++|| |.+|+.||..+-... ....+.+-....|++++|||.|..|.+.+....++|+|..|
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG 245 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDG 245 (641)
T ss_pred CceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCC
Confidence 446799999999999999998 779999996532111 11111221245789999999999999999989999999999
Q ss_pred ccceeccccc---------ccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCc-ccccccccCCccee
Q 003087 86 EEITRFTNKH---------LKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSA-SISSASASSSGLTL 155 (849)
Q Consensus 86 ~~~~~l~~~~---------~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~-~~~~~~~~~~~~~l 155 (849)
.++....++. .++...+.+..|.|+.. ..|.++++||++|+|++...+.+ +++. +. .
T Consensus 246 ~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k------~~FlT~s~DgtlRiWdv~~~k~q~qVik------~k-~ 312 (641)
T KOG0772|consen 246 FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNK------EEFLTCSYDGTLRIWDVNNTKSQLQVIK------TK-P 312 (641)
T ss_pred ceeeeeeccchhhhhhhccCCceeeeeccccccCcc------cceEEecCCCcEEEEecCCchhheeEEe------ec-c
Confidence 8776665441 12223455666666432 25889999999999999764432 2322 01 1
Q ss_pred ccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCcccc--ccc
Q 003087 156 RRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQL--AHP 233 (849)
Q Consensus 156 ~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~--~V~ 233 (849)
.++..-.+.+.+|+|||+++|.|-.| |+ |.+|+..+. ...+.. .+ -+. |.. .|.
T Consensus 313 ~~g~Rv~~tsC~~nrdg~~iAagc~D-----------GS--IQ~W~~~~~-~v~p~~------~v--k~A--H~~g~~It 368 (641)
T KOG0772|consen 313 AGGKRVPVTSCAWNRDGKLIAAGCLD-----------GS--IQIWDKGSR-TVRPVM------KV--KDA--HLPGQDIT 368 (641)
T ss_pred CCCcccCceeeecCCCcchhhhcccC-----------Cc--eeeeecCCc-ccccce------Ee--eec--cCCCCcee
Confidence 12223368999999999998766555 44 999997332 111110 00 012 555 899
Q ss_pred eEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEE-----
Q 003087 234 KVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILAR----- 308 (849)
Q Consensus 234 ~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~----- 308 (849)
+|+||+||++|+|=|.|+++++||+......|..+... ++ ...-.+++||||.+|++++
T Consensus 369 si~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL----------~t------~~~~tdc~FSPd~kli~TGtS~~~ 432 (641)
T KOG0772|consen 369 SISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGL----------PT------PFPGTDCCFSPDDKLILTGTSAPN 432 (641)
T ss_pred EEEeccccchhhhccCCCceeeeeccccccchhhhcCC----------Cc------cCCCCccccCCCceEEEecccccC
Confidence 99999999999999999999999998765445554421 11 1234678999999987654
Q ss_pred --eCCcEEEEEecCCcccc
Q 003087 309 --KSSIITMIDVLSGLKVK 325 (849)
Q Consensus 309 --~dgti~lwdl~~~~~l~ 325 (849)
..|++.++|-.+...++
T Consensus 433 ~~~~g~L~f~d~~t~d~v~ 451 (641)
T KOG0772|consen 433 GMTAGTLFFFDRMTLDTVY 451 (641)
T ss_pred CCCCceEEEEeccceeeEE
Confidence 34578888877776554
No 40
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.87 E-value=5.7e-21 Score=191.54 Aligned_cols=215 Identities=13% Similarity=0.132 Sum_probs=160.5
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCcc
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEE 87 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~ 87 (849)
.++.|.+|.|--||+++.+|| |++++||+.... .+.+ .......|++|...|+..-|.+|+.+|.||+||+....
T Consensus 82 h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~---~~qR-~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~ 157 (311)
T KOG0315|consen 82 HTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL---SCQR-NYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENS 157 (311)
T ss_pred cCCceEEEEEeecCeEEEecCCCceEEEEeccCc---ccch-hccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCc
Confidence 447899999999999999999 689999998641 1111 12236789999999999999999999999999996543
Q ss_pred ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEE
Q 003087 88 ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTD 167 (849)
Q Consensus 88 ~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sva 167 (849)
+....-... ..+|.++...||+.. ++.+...|+..+|++..+...+.++ ..-+|+.| ...|....
T Consensus 158 c~~~liPe~--~~~i~sl~v~~dgsm-------l~a~nnkG~cyvW~l~~~~~~s~l~-----P~~k~~ah-~~~il~C~ 222 (311)
T KOG0315|consen 158 CTHELIPED--DTSIQSLTVMPDGSM-------LAAANNKGNCYVWRLLNHQTASELE-----PVHKFQAH-NGHILRCL 222 (311)
T ss_pred cccccCCCC--CcceeeEEEcCCCcE-------EEEecCCccEEEEEccCCCccccce-----Ehhheecc-cceEEEEE
Confidence 333222111 246888888776653 3445789999999997755433332 01134533 45699999
Q ss_pred EcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEE
Q 003087 168 YHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATS 247 (849)
Q Consensus 168 fsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~ 247 (849)
||||+++||++|.|+| +++|+.++-.-++. ...| |+.+|+..+||.||++|+||
T Consensus 223 lSPd~k~lat~ssdkt-------------v~iwn~~~~~kle~-----------~l~g--h~rWvWdc~FS~dg~YlvTa 276 (311)
T KOG0315|consen 223 LSPDVKYLATCSSDKT-------------VKIWNTDDFFKLEL-----------VLTG--HQRWVWDCAFSADGEYLVTA 276 (311)
T ss_pred ECCCCcEEEeecCCce-------------EEEEecCCceeeEE-----------Eeec--CCceEEeeeeccCccEEEec
Confidence 9999999999999985 79998876311111 1235 88999999999999999999
Q ss_pred eCCCcEEEEecCCCcccccccc
Q 003087 248 DTNGCLYIFEMDKDNFSLSKFA 269 (849)
Q Consensus 248 s~Dgtv~LWd~~~~~~~l~~~~ 269 (849)
+.|++++||++..++. ++++.
T Consensus 277 ssd~~~rlW~~~~~k~-v~qy~ 297 (311)
T KOG0315|consen 277 SSDHTARLWDLSAGKE-VRQYQ 297 (311)
T ss_pred CCCCceeecccccCce-eeecC
Confidence 9999999999998754 45554
No 41
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=5.2e-21 Score=217.89 Aligned_cols=258 Identities=10% Similarity=0.130 Sum_probs=194.6
Q ss_pred ccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-C
Q 003087 8 RKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-G 85 (849)
Q Consensus 8 ~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g 85 (849)
+|-.+|..|+|.|.--++.++- .+.|++||-.- +..+.+|. +|.++|+.|+|.|++-+.+||++|-+|+||+.. -
T Consensus 7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM--~tli~rFd-eHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRM--GTLIDRFD-EHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred cccccccceecCCCCCEEEEeecCceeeeehhhh--hhHHhhhh-ccCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence 3557799999999999998885 68999998542 33444443 347899999999999999999999999999997 5
Q ss_pred ccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEE
Q 003087 86 EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVIC 165 (849)
Q Consensus 86 ~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~s 165 (849)
++++++.+|. ..|+.+.|.+..- | +.++|.|.|||+||-.+..+...+ . +|...|.|
T Consensus 84 rclftL~GHl----DYVRt~~FHheyP--W-----IlSASDDQTIrIWNwqsr~~iavl-----------t-GHnHYVMc 140 (1202)
T KOG0292|consen 84 RCLFTLLGHL----DYVRTVFFHHEYP--W-----ILSASDDQTIRIWNWQSRKCIAVL-----------T-GHNHYVMC 140 (1202)
T ss_pred eehhhhcccc----ceeEEeeccCCCc--e-----EEEccCCCeEEEEeccCCceEEEE-----------e-cCceEEEe
Confidence 6677877654 5789999987432 2 455689999999999887775543 3 45678999
Q ss_pred EEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCC-------cCccc-ceeccc-ccee--------eccCCCcc
Q 003087 166 TDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHN-------LELEQ-LYTTQI-EGLY--------CEPKGHEV 228 (849)
Q Consensus 166 vafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~-------~~~~~-l~~~~~-~~~~--------~~~~g~~h 228 (849)
..|||.-.+++|||-|.| ||+||+.+- ..++. +...|. ..+| ....| |
T Consensus 141 AqFhptEDlIVSaSLDQT-------------VRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEG--H 205 (1202)
T KOG0292|consen 141 AQFHPTEDLIVSASLDQT-------------VRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEG--H 205 (1202)
T ss_pred eccCCccceEEEecccce-------------EEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecc--c
Confidence 999999999999999985 888988651 00111 110010 0011 12456 9
Q ss_pred ccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEE
Q 003087 229 QLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILA 307 (849)
Q Consensus 229 ~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a 307 (849)
..+|+-+||.|---+++||+.|..|+||.+... +-|.... . .+|.+.|.++-|.|.+- |++.
T Consensus 206 DRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet----KaWEvDt------------c-rgH~nnVssvlfhp~q~lIlSn 268 (1202)
T KOG0292|consen 206 DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET----KAWEVDT------------C-RGHYNNVSSVLFHPHQDLILSN 268 (1202)
T ss_pred ccccceEEecCCcceEEecCCcceeeEEEeccc----cceeehh------------h-hcccCCcceEEecCccceeEec
Confidence 999999999999999999999999999999743 3443211 1 25788999999999654 5678
Q ss_pred EeCCcEEEEEecCCcc
Q 003087 308 RKSSIITMIDVLSGLK 323 (849)
Q Consensus 308 ~~dgti~lwdl~~~~~ 323 (849)
+.|++|+|||+...+-
T Consensus 269 sEDksirVwDm~kRt~ 284 (1202)
T KOG0292|consen 269 SEDKSIRVWDMTKRTS 284 (1202)
T ss_pred CCCccEEEEecccccc
Confidence 9999999999986653
No 42
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=3.2e-20 Score=201.33 Aligned_cols=240 Identities=9% Similarity=0.072 Sum_probs=178.8
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECC-CCCEEEEEeCCCcEEEEecCCccc
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSE-SHDVLGIVDDTHTVYFFKANGEEI 88 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSP-DG~~LAs~~~dgtIrlWd~~g~~~ 88 (849)
+.|+++.|-.||++||.|. .|.|+|+|... ...+..+. .++.++..+-|+| |++.|++|++|+++++||+++...
T Consensus 69 ~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~--r~iLR~~~-ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v 145 (487)
T KOG0310|consen 69 DVVYSVDFRSDGRLLAAGDESGHVKVFDMKS--RVILRQLY-AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV 145 (487)
T ss_pred cceeEEEeecCCeEEEccCCcCcEEEecccc--HHHHHHHh-hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE
Confidence 6799999999999999987 48999998431 11111222 2477899999999 556777899999999999986653
Q ss_pred -eecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEE
Q 003087 89 -TRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTD 167 (849)
Q Consensus 89 -~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sva 167 (849)
..+.+| ...|.+.+++|... ..++++||||+||+||+..... ... +| .|..+|.+|-
T Consensus 146 ~~~l~~h----tDYVR~g~~~~~~~------hivvtGsYDg~vrl~DtR~~~~-~v~---------el--nhg~pVe~vl 203 (487)
T KOG0310|consen 146 QAELSGH----TDYVRCGDISPAND------HIVVTGSYDGKVRLWDTRSLTS-RVV---------EL--NHGCPVESVL 203 (487)
T ss_pred EEEecCC----cceeEeeccccCCC------eEEEecCCCceEEEEEeccCCc-eeE---------Ee--cCCCceeeEE
Confidence 344443 36799999887321 1366779999999999976432 121 22 2445799999
Q ss_pred EcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEE
Q 003087 168 YHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATS 247 (849)
Q Consensus 168 fsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~ 247 (849)
|-|.|.++|++|+.. |++||+.++. +.+.. ... |...|.++.+.-||+.|.|+
T Consensus 204 ~lpsgs~iasAgGn~--------------vkVWDl~~G~--qll~~---------~~~--H~KtVTcL~l~s~~~rLlS~ 256 (487)
T KOG0310|consen 204 ALPSGSLIASAGGNS--------------VKVWDLTTGG--QLLTS---------MFN--HNKTVTCLRLASDSTRLLSG 256 (487)
T ss_pred EcCCCCEEEEcCCCe--------------EEEEEecCCc--eehhh---------hhc--ccceEEEEEeecCCceEeec
Confidence 999999999998774 8999998542 11111 112 88899999999999999999
Q ss_pred eCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecCCc
Q 003087 248 DTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVLSGL 322 (849)
Q Consensus 248 s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~~ 322 (849)
|.||.|+++|+.+-+. +..|. ..++|.+++-+||+. +++|..||.+.+-....++
T Consensus 257 sLD~~VKVfd~t~~Kv-v~s~~-------------------~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 257 SLDRHVKVFDTTNYKV-VHSWK-------------------YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKK 312 (487)
T ss_pred ccccceEEEEccceEE-EEeee-------------------cccceeeEEecCCCceEEEecccceeeeehhhccc
Confidence 9999999999876543 33332 457899999999775 7889999999887655544
No 43
>PTZ00420 coronin; Provisional
Probab=99.86 E-value=9.5e-20 Score=211.99 Aligned_cols=239 Identities=9% Similarity=0.045 Sum_probs=158.7
Q ss_pred EEEEcCCCCeEEEE----e---CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCC-CCEEEEEeCCCcEEEEecC-C
Q 003087 15 SLFISPRGERVAVA----A---VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSES-HDVLGIVDDTHTVYFFKAN-G 85 (849)
Q Consensus 15 slafSPdG~~LAsa----s---~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPD-G~~LAs~~~dgtIrlWd~~-g 85 (849)
+-.++.+++++|.. + .+.|++|+.... .++..+. .|.+.|.+++|+|+ +.+||||+.||+|+|||+. +
T Consensus 31 s~~ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r~--~~v~~L~-gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~ 107 (568)
T PTZ00420 31 SCGIACSSGFVAVPWEVEGGGLIGAIRLENQMRK--PPVIKLK-GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHN 107 (568)
T ss_pred ceeEeeCCCeEEEEEEcCCCCceeEEEeeecCCC--ceEEEEc-CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Confidence 34466677888863 1 246888875432 2333333 23678999999997 8999999999999999986 3
Q ss_pred cc-c-------eecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceecc
Q 003087 86 EE-I-------TRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRR 157 (849)
Q Consensus 86 ~~-~-------~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~ 157 (849)
.. . ..+.+ +...|.+++|+|++.. .+++++.||+|++||+.++.... ++.
T Consensus 108 ~~~~~~i~~p~~~L~g----H~~~V~sVaf~P~g~~------iLaSgS~DgtIrIWDl~tg~~~~-----------~i~- 165 (568)
T PTZ00420 108 DESVKEIKDPQCILKG----HKKKISIIDWNPMNYY------IMCSSGFDSFVNIWDIENEKRAF-----------QIN- 165 (568)
T ss_pred CccccccccceEEeec----CCCcEEEEEECCCCCe------EEEEEeCCCeEEEEECCCCcEEE-----------EEe-
Confidence 21 1 12222 2357999999985421 24566899999999998765321 122
Q ss_pred ccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccc-----c
Q 003087 158 QFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLA-----H 232 (849)
Q Consensus 158 ~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~-----V 232 (849)
+...|.+++|||+|++|++++.|+ .|++||+.++. .+. ...+ |.+. +
T Consensus 166 -~~~~V~SlswspdG~lLat~s~D~-------------~IrIwD~Rsg~---~i~---------tl~g--H~g~~~s~~v 217 (568)
T PTZ00420 166 -MPKKLSSLKWNIKGNLLSGTCVGK-------------HMHIIDPRKQE---IAS---------SFHI--HDGGKNTKNI 217 (568)
T ss_pred -cCCcEEEEEECCCCCEEEEEecCC-------------EEEEEECCCCc---EEE---------EEec--ccCCceeEEE
Confidence 234699999999999999888776 38999987642 111 1123 4443 3
Q ss_pred ceEEEccCCCEEEEEeCCC----cEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEE
Q 003087 233 PKVLISPQGKFVATSDTNG----CLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILA 307 (849)
Q Consensus 233 ~~vafSPDG~~LAs~s~Dg----tv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a 307 (849)
+...||||+++|+|++.|+ +|+|||+.+....+..+... .+.+.+..+...++|. +++|
T Consensus 218 ~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld----------------~~~~~L~p~~D~~tg~l~lsG 281 (568)
T PTZ00420 218 WIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID----------------NASAPLIPHYDESTGLIYLIG 281 (568)
T ss_pred EeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec----------------CCccceEEeeeCCCCCEEEEE
Confidence 4456789999999999885 79999998643223332210 1112222233334565 5678
Q ss_pred EeCCcEEEEEecCCc
Q 003087 308 RKSSIITMIDVLSGL 322 (849)
Q Consensus 308 ~~dgti~lwdl~~~~ 322 (849)
+.|++|++|++..+.
T Consensus 282 kGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 282 KGDGNCRYYQHSLGS 296 (568)
T ss_pred ECCCeEEEEEccCCc
Confidence 899999999998764
No 44
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=4.5e-20 Score=195.88 Aligned_cols=266 Identities=12% Similarity=0.075 Sum_probs=189.5
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeee-cCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCc
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNC-TGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGE 86 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~-~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~ 86 (849)
+.+-||-+.|||||+|||+|| |.+..||....+.. ..-..+. .++.+|..+.||||.++|.+++.|..+++||+...
T Consensus 223 htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tg 301 (519)
T KOG0293|consen 223 HTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTG 301 (519)
T ss_pred CCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcc
Confidence 347899999999999999998 67888998664422 1112232 23678999999999999999999999999999844
Q ss_pred cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT 166 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv 166 (849)
.+.+..++. ...++.+.++-||+. +|.+++.|+++..|+......... .|.....|.++
T Consensus 302 d~~~~y~~~--~~~S~~sc~W~pDg~-------~~V~Gs~dr~i~~wdlDgn~~~~W------------~gvr~~~v~dl 360 (519)
T KOG0293|consen 302 DLRHLYPSG--LGFSVSSCAWCPDGF-------RFVTGSPDRTIIMWDLDGNILGNW------------EGVRDPKVHDL 360 (519)
T ss_pred hhhhhcccC--cCCCcceeEEccCCc-------eeEecCCCCcEEEecCCcchhhcc------------cccccceeEEE
Confidence 444444432 235688889888764 367778999999999764332211 12222359999
Q ss_pred EEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEE
Q 003087 167 DYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVAT 246 (849)
Q Consensus 167 afsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs 246 (849)
+.++||+.+++++.|. .|++.++....+. |.++ .+.+|.++++|-||++..+
T Consensus 361 ait~Dgk~vl~v~~d~-------------~i~l~~~e~~~dr---------~lis------e~~~its~~iS~d~k~~Lv 412 (519)
T KOG0293|consen 361 AITYDGKYVLLVTVDK-------------KIRLYNREARVDR---------GLIS------EEQPITSFSISKDGKLALV 412 (519)
T ss_pred EEcCCCcEEEEEeccc-------------ceeeechhhhhhh---------cccc------ccCceeEEEEcCCCcEEEE
Confidence 9999999999888886 3788877654321 1221 3458999999999999988
Q ss_pred EeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEe--cCCEEEEEEeCCcEEEEEecCCccc
Q 003087 247 SDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWW--SDNILILARKSSIITMIDVLSGLKV 324 (849)
Q Consensus 247 ~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws--~D~~la~a~~dgti~lwdl~~~~~l 324 (849)
-=.+..++|||+.... .++++..+.|..+ +..-+|- .|.-+|+|+.|+.|.||+..+|+ +
T Consensus 413 nL~~qei~LWDl~e~~-lv~kY~Ghkq~~f----------------iIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk-l 474 (519)
T KOG0293|consen 413 NLQDQEIHLWDLEENK-LVRKYFGHKQGHF----------------IIRSCFGGGNDKFIASGSEDSKVYIWHRISGK-L 474 (519)
T ss_pred EcccCeeEEeecchhh-HHHHhhcccccce----------------EEEeccCCCCcceEEecCCCceEEEEEccCCc-e
Confidence 8899999999999554 3566654433322 2222332 22348899999999999999887 4
Q ss_pred cccCCCCCCeEEEEEecc
Q 003087 325 KETDPKLRGHVFLLESKS 342 (849)
Q Consensus 325 ~~~~~~~~g~~~~Le~~~ 342 (849)
+...++|.+++--+.+.+
T Consensus 475 l~~LsGHs~~vNcVswNP 492 (519)
T KOG0293|consen 475 LAVLSGHSKTVNCVSWNP 492 (519)
T ss_pred eEeecCCcceeeEEecCC
Confidence 444666777777666643
No 45
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.85 E-value=1.7e-19 Score=203.25 Aligned_cols=271 Identities=14% Similarity=0.158 Sum_probs=196.6
Q ss_pred ccCcccccceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEec
Q 003087 4 YRQPRKTKKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKA 83 (849)
Q Consensus 4 ~~~~~~~~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~ 83 (849)
|.-+.+|.-|.++.||.|...+|||+++.++||+.+. .+.+.+++ .+-+.+..|-|.++++++|..+|.+.|+|+
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t--~kciRTi~---~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdl 441 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDT--LKCIRTIT---CGYILASKFVPGDRYIVLGTKNGELQVFDL 441 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCCCcEEEEEccC--cceeEEec---cccEEEEEecCCCceEEEeccCCceEEEEe
Confidence 3346788999999999999999999999999999753 23333333 346789999999999999999999999999
Q ss_pred C-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCC-ccccccccc-CCcceeccccC
Q 003087 84 N-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPS-ASISSASAS-SSGLTLRRQFP 160 (849)
Q Consensus 84 ~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~-~~~~~~~~~-~~~~~l~~~~~ 160 (849)
. +..+-++. +| ..+|++++.+||+. .|+++|.|.+|++|++..-.. .....+-++ .+..+| ..+
T Consensus 442 aS~~l~Eti~-AH---dgaIWsi~~~pD~~-------g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL--el~ 508 (888)
T KOG0306|consen 442 ASASLVETIR-AH---DGAIWSISLSPDNK-------GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL--ELE 508 (888)
T ss_pred ehhhhhhhhh-cc---ccceeeeeecCCCC-------ceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE--ecc
Confidence 7 44444554 34 25799999988654 377789999999999853111 001100000 111222 235
Q ss_pred CceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccC
Q 003087 161 QNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQ 240 (849)
Q Consensus 161 ~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPD 240 (849)
..|.|+++||||++||++=-|.| |+++-+++- .+|-..-| |..+|.+|.+|||
T Consensus 509 ddvL~v~~Spdgk~LaVsLLdnT-------------VkVyflDtl------------KFflsLYG--HkLPV~smDIS~D 561 (888)
T KOG0306|consen 509 DDVLCVSVSPDGKLLAVSLLDNT-------------VKVYFLDTL------------KFFLSLYG--HKLPVLSMDISPD 561 (888)
T ss_pred ccEEEEEEcCCCcEEEEEeccCe-------------EEEEEecce------------eeeeeecc--cccceeEEeccCC
Confidence 67999999999999998877764 788877652 12223345 9999999999999
Q ss_pred CCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEE-EEEEeCCcEEEEEec
Q 003087 241 GKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNIL-ILARKSSIITMIDVL 319 (849)
Q Consensus 241 G~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~l-a~a~~dgti~lwdl~ 319 (849)
+++++|+|.|.+|++|-++-+.| -+.+- .|.+.|.+|-|-|+..+ -+++.||.|+-||-.
T Consensus 562 SklivTgSADKnVKiWGLdFGDC-HKS~f------------------AHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~ 622 (888)
T KOG0306|consen 562 SKLIVTGSADKNVKIWGLDFGDC-HKSFF------------------AHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGE 622 (888)
T ss_pred cCeEEeccCCCceEEeccccchh-hhhhh------------------cccCceeEEEEcccceeEEEecCcceEEeechh
Confidence 99999999999999999997766 22221 36678999999997764 588999999999976
Q ss_pred CCccccccCCCCCCeEEEEE
Q 003087 320 SGLKVKETDPKLRGHVFLLE 339 (849)
Q Consensus 320 ~~~~l~~~~~~~~g~~~~Le 339 (849)
.-..++ +.++|...+..|.
T Consensus 623 kFe~iq-~L~~H~~ev~cLa 641 (888)
T KOG0306|consen 623 KFEEIQ-KLDGHHSEVWCLA 641 (888)
T ss_pred hhhhhe-eeccchheeeeeE
Confidence 555333 2333444444433
No 46
>PTZ00421 coronin; Provisional
Probab=99.85 E-value=1.3e-19 Score=209.65 Aligned_cols=210 Identities=11% Similarity=0.103 Sum_probs=149.5
Q ss_pred cccceEEEEEcC-CCCeEEEEe-CCeEEEEecCCCC-----CcceeeeeecCCCCEEEEEECCCC-CEEEEEeCCCcEEE
Q 003087 9 KTKKQVSLFISP-RGERVAVAA-VNQVTILQKDDDY-----QEPCGIFNCTGLGASIYGAWSESH-DVLGIVDDTHTVYF 80 (849)
Q Consensus 9 ~~~~v~slafSP-dG~~LAsas-~~~i~iw~~~~~~-----~~~~~~~~~~~~~~v~~vafSPDG-~~LAs~~~dgtIrl 80 (849)
+.+.|.+|+||| |+++||+|+ |++|+||+..++. ..++..+.. +...|.+++|+|++ .+||+|+.|++|+|
T Consensus 74 H~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~g-H~~~V~~l~f~P~~~~iLaSgs~DgtVrI 152 (493)
T PTZ00421 74 QEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQG-HTKKVGIVSFHPSAMNVLASAGADMVVNV 152 (493)
T ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecC-CCCcEEEEEeCcCCCCEEEEEeCCCEEEE
Confidence 457899999999 999999998 6899999975431 112223322 35689999999986 79999999999999
Q ss_pred EecC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceecccc
Q 003087 81 FKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQF 159 (849)
Q Consensus 81 Wd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (849)
||+. |+.+..+..| ...|.+++|+|++. .|++++.||+|++||+.++.... ++.+|.
T Consensus 153 WDl~tg~~~~~l~~h----~~~V~sla~spdG~-------lLatgs~Dg~IrIwD~rsg~~v~-----------tl~~H~ 210 (493)
T PTZ00421 153 WDVERGKAVEVIKCH----SDQITSLEWNLDGS-------LLCTTSKDKKLNIIDPRDGTIVS-----------SVEAHA 210 (493)
T ss_pred EECCCCeEEEEEcCC----CCceEEEEEECCCC-------EEEEecCCCEEEEEECCCCcEEE-----------EEecCC
Confidence 9997 5555555433 25799999998654 36667999999999998765432 233343
Q ss_pred CCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEcc
Q 003087 160 PQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISP 239 (849)
Q Consensus 160 ~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSP 239 (849)
...+..+.|+|++..++++|.++. ..+ .|++||+..... ++.... .+ +...+....|+|
T Consensus 211 ~~~~~~~~w~~~~~~ivt~G~s~s-------~Dr--~VklWDlr~~~~--p~~~~~--------~d--~~~~~~~~~~d~ 269 (493)
T PTZ00421 211 SAKSQRCLWAKRKDLIITLGCSKS-------QQR--QIMLWDTRKMAS--PYSTVD--------LD--QSSALFIPFFDE 269 (493)
T ss_pred CCcceEEEEcCCCCeEEEEecCCC-------CCC--eEEEEeCCCCCC--ceeEec--------cC--CCCceEEEEEcC
Confidence 223567889999988888775431 112 499999865321 111000 01 223566678999
Q ss_pred CCCEEEEEe-CCCcEEEEecCCCc
Q 003087 240 QGKFVATSD-TNGCLYIFEMDKDN 262 (849)
Q Consensus 240 DG~~LAs~s-~Dgtv~LWd~~~~~ 262 (849)
||++|++++ .||+|++||+.++.
T Consensus 270 d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 270 DTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred CCCEEEEEEeCCCeEEEEEeeCCc
Confidence 999999988 59999999999774
No 47
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.85 E-value=3.6e-20 Score=193.60 Aligned_cols=246 Identities=15% Similarity=0.145 Sum_probs=189.0
Q ss_pred cccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCC
Q 003087 7 PRKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANG 85 (849)
Q Consensus 7 ~~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g 85 (849)
..+.++|.+|+|.|-.+++|+|| |.+|+|||+..+ ++..+++. +-..|+.|++|+-..+|-|++.|+.|+-||+.-
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg--~LkltltG-hi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~ 224 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG--QLKLTLTG-HIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY 224 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCceeEEEEcccC--eEEEeecc-hhheeeeeeecccCceEEEecCCCeeEEEechh
Confidence 34669999999999999999998 679999998753 33333332 356789999999999999999999999999984
Q ss_pred -ccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceE
Q 003087 86 -EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVI 164 (849)
Q Consensus 86 -~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~ 164 (849)
+.++...+|. +.|.+++..|.-.. +++++.|.++|+||+.+..... .|. +|.+.|.
T Consensus 225 nkvIR~YhGHl----S~V~~L~lhPTldv-------l~t~grDst~RvWDiRtr~~V~-----------~l~-GH~~~V~ 281 (460)
T KOG0285|consen 225 NKVIRHYHGHL----SGVYCLDLHPTLDV-------LVTGGRDSTIRVWDIRTRASVH-----------VLS-GHTNPVA 281 (460)
T ss_pred hhhHHHhcccc----ceeEEEecccccee-------EEecCCcceEEEeeecccceEE-----------Eec-CCCCcce
Confidence 4455554433 57889998874333 5566899999999998754432 344 4577899
Q ss_pred EEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEE
Q 003087 165 CTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFV 244 (849)
Q Consensus 165 svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~L 244 (849)
+|.+-|-.-.++++|.|+| |++||...+.....+ .. |...|++++..|.-..+
T Consensus 282 ~V~~~~~dpqvit~S~D~t-------------vrlWDl~agkt~~tl------------t~--hkksvral~lhP~e~~f 334 (460)
T KOG0285|consen 282 SVMCQPTDPQVITGSHDST-------------VRLWDLRAGKTMITL------------TH--HKKSVRALCLHPKENLF 334 (460)
T ss_pred eEEeecCCCceEEecCCce-------------EEEeeeccCceeEee------------ec--ccceeeEEecCCchhhh
Confidence 9999996666779999974 899998765211111 11 67799999999999999
Q ss_pred EEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecCCccc
Q 003087 245 ATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSGLKV 324 (849)
Q Consensus 245 As~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~~~~l 324 (849)
||++.|. |+-|+++.+.+ +..+. +|...+..++-.+||.+++|+.+|.+..||..+|-+.
T Consensus 335 ASas~dn-ik~w~~p~g~f-~~nls------------------gh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~ny 394 (460)
T KOG0285|consen 335 ASASPDN-IKQWKLPEGEF-LQNLS------------------GHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNY 394 (460)
T ss_pred hccCCcc-ceeccCCccch-hhccc------------------cccceeeeeeeccCceEEEcCCceEEEEEecCcCccc
Confidence 9999875 78899998755 23322 3445667777778999999999999999999999765
Q ss_pred c
Q 003087 325 K 325 (849)
Q Consensus 325 ~ 325 (849)
+
T Consensus 395 Q 395 (460)
T KOG0285|consen 395 Q 395 (460)
T ss_pred c
Confidence 4
No 48
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.85 E-value=4e-20 Score=216.95 Aligned_cols=256 Identities=14% Similarity=0.163 Sum_probs=176.1
Q ss_pred ccccceEEEEEcCCCCeEEEEeCC-eEEEEecCC-CCCcceee-------------eee-cCCCCEEEEEECCCCCEEEE
Q 003087 8 RKTKKQVSLFISPRGERVAVAAVN-QVTILQKDD-DYQEPCGI-------------FNC-TGLGASIYGAWSESHDVLGI 71 (849)
Q Consensus 8 ~~~~~v~slafSPdG~~LAsas~~-~i~iw~~~~-~~~~~~~~-------------~~~-~~~~~v~~vafSPDG~~LAs 71 (849)
++.+.|..|.|||||++||+|||+ -|.||.... +.+...|. ... .|.+.|..|+||||+.+|||
T Consensus 67 ~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS 146 (942)
T KOG0973|consen 67 DHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVS 146 (942)
T ss_pred cccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEE
Confidence 356899999999999999999976 578997652 11111111 111 24678999999999999999
Q ss_pred EeCCCcEEEEecC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccC
Q 003087 72 VDDTHTVYFFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASS 150 (849)
Q Consensus 72 ~~~dgtIrlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~ 150 (849)
++-|++|.+||.. .+.+.++.+|+ +.|-+|.|.|-+.. |++-+.|++|++|.+..-+....+..
T Consensus 147 ~s~DnsViiwn~~tF~~~~vl~~H~----s~VKGvs~DP~Gky-------~ASqsdDrtikvwrt~dw~i~k~It~---- 211 (942)
T KOG0973|consen 147 VSLDNSVIIWNAKTFELLKVLRGHQ----SLVKGVSWDPIGKY-------FASQSDDRTLKVWRTSDWGIEKSITK---- 211 (942)
T ss_pred ecccceEEEEccccceeeeeeeccc----ccccceEECCccCe-------eeeecCCceEEEEEcccceeeEeecc----
Confidence 9999999999985 55666665554 56889999885443 56669999999999765333222221
Q ss_pred CcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCcccc
Q 003087 151 SGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQL 230 (849)
Q Consensus 151 ~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~ 230 (849)
+|.=. .-.....-+.|||||++||++-.-+ +.+. ++.+-+..+- .... .+-| |+.
T Consensus 212 -pf~~~-~~~T~f~RlSWSPDG~~las~nA~n--------~~~~-~~~IieR~tW-k~~~-----------~LvG--H~~ 266 (942)
T KOG0973|consen 212 -PFEES-PLTTFFLRLSWSPDGHHLASPNAVN--------GGKS-TIAIIERGTW-KVDK-----------DLVG--HSA 266 (942)
T ss_pred -chhhC-CCcceeeecccCCCcCeecchhhcc--------CCcc-eeEEEecCCc-eeee-----------eeec--CCC
Confidence 11100 1123588999999999998864332 2222 4555544221 0000 1235 888
Q ss_pred ccceEEEcc--------C-----CC----EEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCc
Q 003087 231 AHPKVLISP--------Q-----GK----FVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDI 293 (849)
Q Consensus 231 ~V~~vafSP--------D-----G~----~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v 293 (849)
++..++|+| + +. .+|+||.|++|.||.....+.. +..+ +++ ...|
T Consensus 267 p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl---~vi~---------~lf------~~SI 328 (942)
T KOG0973|consen 267 PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL---FVIH---------NLF------NKSI 328 (942)
T ss_pred ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch---hhhh---------hhh------cCce
Confidence 999999998 1 22 7999999999999998655431 2111 122 2469
Q ss_pred EEEEEecCCE-EEEEEeCCcEEEEEecCC
Q 003087 294 TDFAWWSDNI-LILARKSSIITMIDVLSG 321 (849)
Q Consensus 294 ~~vaws~D~~-la~a~~dgti~lwdl~~~ 321 (849)
.|++|+|||. |.+++-||+|.+..+...
T Consensus 329 ~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 329 VDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred eeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 9999999996 678899999999998754
No 49
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.85 E-value=1.2e-19 Score=183.68 Aligned_cols=266 Identities=11% Similarity=0.091 Sum_probs=195.7
Q ss_pred ccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-C
Q 003087 8 RKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-G 85 (849)
Q Consensus 8 ~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g 85 (849)
.+.+.++.|.+..+|.+|-+++ |.++.+|-..+ +..+|++.. |.+.|+++...-|.+.|.+|+.|.+++|||+. |
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n--GerlGty~G-HtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN--GERLGTYDG-HTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred cCccccceEEecCCCcEEEEecCCCCceEEEecC--CceeeeecC-CCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 3557899999999999999998 77899997654 456787764 37899999999999999999999999999996 8
Q ss_pred ccceecccccccccccEEEEEecCCcc-cccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceE
Q 003087 86 EEITRFTNKHLKVSLPIIGLIAQDETD-VQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVI 164 (849)
Q Consensus 86 ~~~~~l~~~~~~~~~~V~~l~fs~~~~-~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~ 164 (849)
+++.++.- ..+|..+-|+.++. ...+.++.+ ++.+.|.++++.........+ .....+... ...++
T Consensus 85 k~la~~k~-----~~~Vk~~~F~~~gn~~l~~tD~~m---g~~~~v~~fdi~~~~~~~~s~----ep~~kI~t~-~skit 151 (327)
T KOG0643|consen 85 KQLATWKT-----NSPVKRVDFSFGGNLILASTDKQM---GYTCFVSVFDIRDDSSDIDSE----EPYLKIPTP-DSKIT 151 (327)
T ss_pred cEEEEeec-----CCeeEEEeeccCCcEEEEEehhhc---CcceEEEEEEccCChhhhccc----CceEEecCC-cccee
Confidence 88877643 46899999988543 222222111 567889999997544221111 001122212 24699
Q ss_pred EEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEE
Q 003087 165 CTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFV 244 (849)
Q Consensus 165 svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~L 244 (849)
.+-|+|-|+.|++|..++ . |+.||+..+.. .+-+. ..|...|..|.||||..+.
T Consensus 152 ~a~Wg~l~~~ii~Ghe~G-----------~--is~~da~~g~~--~v~s~-----------~~h~~~Ind~q~s~d~T~F 205 (327)
T KOG0643|consen 152 SALWGPLGETIIAGHEDG-----------S--ISIYDARTGKE--LVDSD-----------EEHSSKINDLQFSRDRTYF 205 (327)
T ss_pred eeeecccCCEEEEecCCC-----------c--EEEEEcccCce--eeech-----------hhhccccccccccCCcceE
Confidence 999999999998887775 2 99999987531 11111 1278899999999999999
Q ss_pred EEEeCCCcEEEEecCCCcccccccccccccccccccccCCC---------------------------------------
Q 003087 245 ATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDG--------------------------------------- 285 (849)
Q Consensus 245 As~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~--------------------------------------- 285 (849)
.|++.|.+-+|||+.+..+ ++++.... ..+...++|.
T Consensus 206 iT~s~Dttakl~D~~tl~v-~Kty~te~---PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEig 281 (327)
T KOG0643|consen 206 ITGSKDTTAKLVDVRTLEV-LKTYTTER---PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIG 281 (327)
T ss_pred EecccCccceeeeccceee-EEEeeecc---cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhc
Confidence 9999999999999998876 66664321 1111112220
Q ss_pred -CCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEec
Q 003087 286 -RTKPISDITDFAWWSDNI-LILARKSSIITMIDVL 319 (849)
Q Consensus 286 -~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~ 319 (849)
.++|+++|.+|+|+|||+ .++|+.||.|+|.-+.
T Consensus 282 rvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 282 RVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred cccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 357889999999999997 7899999999997654
No 50
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.4e-19 Score=180.25 Aligned_cols=245 Identities=12% Similarity=0.105 Sum_probs=181.1
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cc
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GE 86 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~ 86 (849)
+.+.|.++.|.-||+|..+++ |.+|++|+... +..+.++..+ ...|..++-|.|...+|+++.|..|.+||++ |+
T Consensus 16 ~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~r--g~liktYsgh-G~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk 92 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLR--GALIKTYSGH-GHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGK 92 (307)
T ss_pred cccceEEEEEccCCCEEEEcCCCceEEeecccc--cceeeeecCC-CceeeeccccccccccccCCCCceEEEEEcccCe
Confidence 338899999999999988775 78999999653 3444444432 4578999999999999999999999999997 77
Q ss_pred cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT 166 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv 166 (849)
.++++.+|. ..|+.|.|+++.... ++++.|.++|+||........++- | .....+|.+|
T Consensus 93 v~Rr~rgH~----aqVNtV~fNeesSVv-------~SgsfD~s~r~wDCRS~s~ePiQi---------l-dea~D~V~Si 151 (307)
T KOG0316|consen 93 VDRRFRGHL----AQVNTVRFNEESSVV-------ASGSFDSSVRLWDCRSRSFEPIQI---------L-DEAKDGVSSI 151 (307)
T ss_pred eeeeccccc----ceeeEEEecCcceEE-------EeccccceeEEEEcccCCCCccch---------h-hhhcCceeEE
Confidence 777775543 468999998876553 445899999999997543322211 1 1334579999
Q ss_pred EEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEE
Q 003087 167 DYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVAT 246 (849)
Q Consensus 167 afsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs 246 (849)
..+ +..++.|+-|+| ++.+++..+. + .+-+-| .+|.+++|||||+.+..
T Consensus 152 ~v~--~heIvaGS~DGt-------------vRtydiR~G~----l--------~sDy~g----~pit~vs~s~d~nc~La 200 (307)
T KOG0316|consen 152 DVA--EHEIVAGSVDGT-------------VRTYDIRKGT----L--------SSDYFG----HPITSVSFSKDGNCSLA 200 (307)
T ss_pred Eec--ccEEEeeccCCc-------------EEEEEeecce----e--------ehhhcC----CcceeEEecCCCCEEEE
Confidence 987 345667777864 7888886642 1 111222 48999999999999999
Q ss_pred EeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEec-CCEEEEEEeCCcEEEEEecCCcccc
Q 003087 247 SDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWS-DNILILARKSSIITMIDVLSGLKVK 325 (849)
Q Consensus 247 ~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~-D~~la~a~~dgti~lwdl~~~~~l~ 325 (849)
++.|++|+|-|-.+++. |+.+..+...++ =.+.++.+ |..+++++.||.|.+||+.....+.
T Consensus 201 ~~l~stlrLlDk~tGkl-L~sYkGhkn~ey----------------kldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~s 263 (307)
T KOG0316|consen 201 SSLDSTLRLLDKETGKL-LKSYKGHKNMEY----------------KLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQIS 263 (307)
T ss_pred eeccceeeecccchhHH-HHHhccccccee----------------eeeeeecccceeEEeccCCceEEEEEeccceeee
Confidence 99999999999999865 666664332111 12334443 5568899999999999999887655
No 51
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1e-19 Score=207.45 Aligned_cols=219 Identities=13% Similarity=0.147 Sum_probs=163.7
Q ss_pred cccceEEEEEcCCCCeEEEEeCC-eEEEEecCCCCCcceeeeee-cCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-C
Q 003087 9 KTKKQVSLFISPRGERVAVAAVN-QVTILQKDDDYQEPCGIFNC-TGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-G 85 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas~~-~i~iw~~~~~~~~~~~~~~~-~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g 85 (849)
+-+.|..|.|.|++-+++||+|+ .|++|+-.. ....++. .|-+-|+.+.|.+.--+|.|||+|.|||||+.. +
T Consensus 50 HdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~----rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr 125 (1202)
T KOG0292|consen 50 HDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT----RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR 125 (1202)
T ss_pred cCCccceeeecCCCCeEEecCCccEEEEEeccc----ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC
Confidence 45899999999999999999976 899999653 2233443 236788999999999999999999999999997 6
Q ss_pred ccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCccc----cc------c---cccC--
Q 003087 86 EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASI----SS------A---SASS-- 150 (849)
Q Consensus 86 ~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~----~~------~---~~~~-- 150 (849)
+++..+++|. ..|.+-.|.|.-.. ++++|-|.|||+||++.-+..+. ++ + ++-+
T Consensus 126 ~~iavltGHn----HYVMcAqFhptEDl-------IVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~ 194 (1202)
T KOG0292|consen 126 KCIAVLTGHN----HYVMCAQFHPTEDL-------IVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQT 194 (1202)
T ss_pred ceEEEEecCc----eEEEeeccCCccce-------EEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCc
Confidence 6777776653 57899999884332 44458999999999974221100 00 0 0000
Q ss_pred --Cc-ceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCc
Q 003087 151 --SG-LTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHE 227 (849)
Q Consensus 151 --~~-~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~ 227 (849)
.. .-+. +|..+|+-++|||.-.+++|||.|.. |++|+++.....+. ....|
T Consensus 195 DaVVK~VLE-GHDRGVNwaAfhpTlpliVSG~DDRq-------------VKlWrmnetKaWEv----------Dtcrg-- 248 (1202)
T KOG0292|consen 195 DAVVKHVLE-GHDRGVNWAAFHPTLPLIVSGADDRQ-------------VKLWRMNETKAWEV----------DTCRG-- 248 (1202)
T ss_pred Ceeeeeeec-ccccccceEEecCCcceEEecCCcce-------------eeEEEeccccceee----------hhhhc--
Confidence 00 1233 45778999999999999999988873 78888876522211 01246
Q ss_pred cccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccc
Q 003087 228 VQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFA 269 (849)
Q Consensus 228 h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~ 269 (849)
|.+.|.++-|.|...++.|.|.|++|++||+...+. +++|.
T Consensus 249 H~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~-v~tfr 289 (1202)
T KOG0292|consen 249 HYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS-VQTFR 289 (1202)
T ss_pred ccCCcceEEecCccceeEecCCCccEEEEecccccc-eeeee
Confidence 999999999999999999999999999999998754 66663
No 52
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.84 E-value=1e-20 Score=194.96 Aligned_cols=262 Identities=11% Similarity=0.157 Sum_probs=177.6
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeec-----CCCCEEEEEECCCCCEEEEEeCCCcEEEEecC
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCT-----GLGASIYGAWSESHDVLGIVDDTHTVYFFKAN 84 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~-----~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~ 84 (849)
..+.+..|||||++|++|| ||-|.+|+...+.-..-.+++.. ....|.++.||.|...||+|+.||.|+||.+.
T Consensus 214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~ 293 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIE 293 (508)
T ss_pred cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEe
Confidence 4578899999999999998 89999998654211101112211 25689999999999999999999999999986
Q ss_pred -CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCce
Q 003087 85 -GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNV 163 (849)
Q Consensus 85 -g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V 163 (849)
|.++.++.+.|. .-|.++.|+.|+.- +.+++.|.++|+--+..|++.. .|+| |...|
T Consensus 294 tG~ClRrFdrAHt---kGvt~l~FSrD~Sq-------iLS~sfD~tvRiHGlKSGK~LK-----------EfrG-HsSyv 351 (508)
T KOG0275|consen 294 TGQCLRRFDRAHT---KGVTCLSFSRDNSQ-------ILSASFDQTVRIHGLKSGKCLK-----------EFRG-HSSYV 351 (508)
T ss_pred cchHHHHhhhhhc---cCeeEEEEccCcch-------hhcccccceEEEeccccchhHH-----------HhcC-ccccc
Confidence 888888876663 46899999886543 3344899999999888777653 3454 46789
Q ss_pred EEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCC-----------cCcccc-ee------------ccccce
Q 003087 164 ICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHN-----------LELEQL-YT------------TQIEGL 219 (849)
Q Consensus 164 ~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~-----------~~~~~l-~~------------~~~~~~ 219 (849)
+.+.|++||..++++++|+|+++|.. +++.| +.-++.-+. .+.+.+ .. +|....
T Consensus 352 n~a~ft~dG~~iisaSsDgtvkvW~~-KtteC-~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrs 429 (508)
T KOG0275|consen 352 NEATFTDDGHHIISASSDGTVKVWHG-KTTEC-LSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRS 429 (508)
T ss_pred cceEEcCCCCeEEEecCCccEEEecC-cchhh-hhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEee
Confidence 99999999999999999987655532 11211 111111110 000110 00 111111
Q ss_pred eeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEe
Q 003087 220 YCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWW 299 (849)
Q Consensus 220 ~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws 299 (849)
|+.-+. ..+.--+..+||-|.++.+.+.|+.+.-+.+.+++. -..++.+ ...|..++-.
T Consensus 430 fsSGkR--EgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~L-E~tl~Vh------------------EkdvIGl~HH 488 (508)
T KOG0275|consen 430 FSSGKR--EGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKL-ERTLPVH------------------EKDVIGLTHH 488 (508)
T ss_pred eccCCc--cCCceEEEEecCCCcEEEEEccCcEEEEEEeecCce-eeeeecc------------------cccccccccC
Confidence 111111 233455778999999999999999999999988754 1233322 2345666767
Q ss_pred cCCE-EEEEEeCCcEEEEE
Q 003087 300 SDNI-LILARKSSIITMID 317 (849)
Q Consensus 300 ~D~~-la~a~~dgti~lwd 317 (849)
|-.. +|+=+.||.+++|.
T Consensus 489 PHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 489 PHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccchhhhhcccchhhhcC
Confidence 7544 56678999999994
No 53
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.8e-19 Score=180.49 Aligned_cols=253 Identities=14% Similarity=0.123 Sum_probs=179.2
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCC-cceeeeeecCCCCEEEEEECC--CCCEEEEEeCCCcEEEEecCCc
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQ-EPCGIFNCTGLGASIYGAWSE--SHDVLGIVDDTHTVYFFKANGE 86 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~-~~~~~~~~~~~~~v~~vafSP--DG~~LAs~~~dgtIrlWd~~g~ 86 (849)
+.|.++...==|++||++| |++|+|.......+ .++..++. |.++|..++|-- -|.+|||++.||.|-||.-.+.
T Consensus 12 D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~G-h~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g 90 (299)
T KOG1332|consen 12 DMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTG-HSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG 90 (299)
T ss_pred hhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecC-CCCCeeEEeecccccCcEeeEeecCceEEEEecCCC
Confidence 4455555555699999996 78999998776543 44444443 378999999987 8999999999999999998755
Q ss_pred cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT 166 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv 166 (849)
.-... -.+..+...|++|+|.|..... .++.++.||.|.+.++...+. ..- .++..-|+.+|++|
T Consensus 91 ~w~k~-~e~~~h~~SVNsV~wapheygl-----~LacasSDG~vsvl~~~~~g~-w~t--------~ki~~aH~~GvnsV 155 (299)
T KOG1332|consen 91 RWTKA-YEHAAHSASVNSVAWAPHEYGL-----LLACASSDGKVSVLTYDSSGG-WTT--------SKIVFAHEIGVNSV 155 (299)
T ss_pred chhhh-hhhhhhcccceeecccccccce-----EEEEeeCCCcEEEEEEcCCCC-ccc--------hhhhhcccccccee
Confidence 32222 1233455789999998732111 367779999999999876421 010 01112456789999
Q ss_pred EEcCC---C-----------ceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCcccccc
Q 003087 167 DYHPE---L-----------SLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAH 232 (849)
Q Consensus 167 afsPd---g-----------~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V 232 (849)
.|.|- | +.||+||+|.+ |++|+.+... -+ .+. .+.+ |.+.|
T Consensus 156 swapa~~~g~~~~~~~~~~~krlvSgGcDn~-------------VkiW~~~~~~---w~----~e~---~l~~--H~dwV 210 (299)
T KOG1332|consen 156 SWAPASAPGSLVDQGPAAKVKRLVSGGCDNL-------------VKIWKFDSDS---WK----LER---TLEG--HKDWV 210 (299)
T ss_pred eecCcCCCccccccCcccccceeeccCCccc-------------eeeeecCCcc---hh----hhh---hhhh--cchhh
Confidence 99997 6 66999999973 8999987641 01 111 1345 99999
Q ss_pred ceEEEccCC----CEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCC-EEEEE
Q 003087 233 PKVLISPQG----KFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDN-ILILA 307 (849)
Q Consensus 233 ~~vafSPDG----~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~-~la~a 307 (849)
+.|||.|.- .+|||+|.||+|-||...... ..|.... |. .+...++.++||.-| .|+++
T Consensus 211 RDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~---e~wk~tl---------l~----~f~~~~w~vSWS~sGn~LaVs 274 (299)
T KOG1332|consen 211 RDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY---EPWKKTL---------LE----EFPDVVWRVSWSLSGNILAVS 274 (299)
T ss_pred hhhhhccccCCCceeeEEecCCCcEEEEEecCcc---Ccccccc---------cc----cCCcceEEEEEeccccEEEEe
Confidence 999999976 459999999999999887542 2333211 11 245678999999865 57888
Q ss_pred EeCCcEEEEEecC
Q 003087 308 RKSSIITMIDVLS 320 (849)
Q Consensus 308 ~~dgti~lwdl~~ 320 (849)
..|+.|++|-=..
T Consensus 275 ~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 275 GGDNKVTLWKENV 287 (299)
T ss_pred cCCcEEEEEEeCC
Confidence 9999999997543
No 54
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=9.5e-19 Score=172.95 Aligned_cols=261 Identities=13% Similarity=0.135 Sum_probs=179.4
Q ss_pred cceEEEEEcCCCCeEEEEeC-CeEEEEecCC----------CCCcceeeee--ecCCCCEEEEEECCCCCEEEEEeCCCc
Q 003087 11 KKQVSLFISPRGERVAVAAV-NQVTILQKDD----------DYQEPCGIFN--CTGLGASIYGAWSESHDVLGIVDDTHT 77 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~-~~i~iw~~~~----------~~~~~~~~~~--~~~~~~v~~vafSPDG~~LAs~~~dgt 77 (849)
..|.+|+|.|+|.+-|+||. .+.+|-.-.+ ..+.|.-.|. .++.+.|-+++|||+|++||+|+.|.+
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ 112 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKT 112 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCce
Confidence 67899999999999999985 5666653211 0112222232 234788999999999999999999999
Q ss_pred EEEEecCCccceecccccccc---cccEEEEEecCC----cc--ccc-cccee---------------------------
Q 003087 78 VYFFKANGEEITRFTNKHLKV---SLPIIGLIAQDE----TD--VQR-SCLCS--------------------------- 120 (849)
Q Consensus 78 IrlWd~~g~~~~~l~~~~~~~---~~~V~~l~fs~~----~~--~~~-s~~~~--------------------------- 120 (849)
|++--.+...+ ...++..++ ..+|..++|-++ +. +++ .++|.
T Consensus 113 ik~l~fn~dt~-~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalys 191 (350)
T KOG0641|consen 113 IKVLPFNADTC-NATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYS 191 (350)
T ss_pred EEEEecccccc-cccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEE
Confidence 99986653322 222333222 257889999542 11 111 11121
Q ss_pred -----EEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCc
Q 003087 121 -----FTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPC 195 (849)
Q Consensus 121 -----~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~ 195 (849)
|++.+.|.+||.||+....+..+...+ +.-.|-....|.+|+..|.|++||+|-.|. +|
T Consensus 192 wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~-----~~~~glessavaav~vdpsgrll~sg~~ds-----------sc 255 (350)
T KOG0641|consen 192 WNGAMFASGSQDKTIRFWDLRVNSCVNTLDND-----FHDGGLESSAVAAVAVDPSGRLLASGHADS-----------SC 255 (350)
T ss_pred ecCcEEEccCCCceEEEEeeeccceeeeccCc-----ccCCCcccceeEEEEECCCcceeeeccCCC-----------ce
Confidence 444567899999999877665554322 111122234799999999999999886664 34
Q ss_pred eeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccc
Q 003087 196 CISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFD 275 (849)
Q Consensus 196 ~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~ 275 (849)
.++|+.++.- ++.+-. |...|++|.|||-.-+|.|++.|.+|++=|+++. .-+.++...
T Consensus 256 --~lydirg~r~------------iq~f~p--hsadir~vrfsp~a~yllt~syd~~ikltdlqgd--la~el~~~v--- 314 (350)
T KOG0641|consen 256 --MLYDIRGGRM------------IQRFHP--HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD--LAHELPIMV--- 314 (350)
T ss_pred --EEEEeeCCce------------eeeeCC--CccceeEEEeCCCceEEEEecccceEEEeecccc--hhhcCceEE---
Confidence 5788887631 222223 8889999999999999999999999999999976 223333211
Q ss_pred cccccccCCCCCCCCCCcEEEEEecCC-EEEEEEeCCcEEEEEec
Q 003087 276 LQVADSLFDGRTKPISDITDFAWWSDN-ILILARKSSIITMIDVL 319 (849)
Q Consensus 276 ~~~~~~l~~~~~~~~~~v~~vaws~D~-~la~a~~dgti~lwdl~ 319 (849)
.++|...+..+.|.|.. ..++.+.|.++++|-++
T Consensus 315 ----------v~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 315 ----------VAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ----------EEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 12466778889999965 57889999999999875
No 55
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.84 E-value=3.3e-20 Score=192.94 Aligned_cols=241 Identities=12% Similarity=0.119 Sum_probs=177.6
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCc-
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGE- 86 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~- 86 (849)
+.+.|..+.|. .+.|.+|| |.+|+|||+.+ +.++.++. ++...|..+.|| ..++++++.|.+|+|||....
T Consensus 236 HtGSVLCLqyd--~rviisGSSDsTvrvWDv~t--ge~l~tli-hHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps 308 (499)
T KOG0281|consen 236 HTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNT--GEPLNTLI-HHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPT 308 (499)
T ss_pred CCCcEEeeecc--ceEEEecCCCceEEEEeccC--CchhhHHh-hhcceeEEEEEe--CCEEEEecCCceeEEEeccCch
Confidence 45788888875 45889996 67999999875 34554443 346789999998 568999999999999998643
Q ss_pred --cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceE
Q 003087 87 --EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVI 164 (849)
Q Consensus 87 --~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~ 164 (849)
.+.+...+| -.+|+.|.|++... .+++.|.||+.|+++++.+..++. +|+.+|-
T Consensus 309 ~it~rrVLvGH---rAaVNvVdfd~kyI---------VsASgDRTikvW~~st~efvRtl~------------gHkRGIA 364 (499)
T KOG0281|consen 309 DITLRRVLVGH---RAAVNVVDFDDKYI---------VSASGDRTIKVWSTSTCEFVRTLN------------GHKRGIA 364 (499)
T ss_pred HHHHHHHHhhh---hhheeeeccccceE---------EEecCCceEEEEeccceeeehhhh------------cccccce
Confidence 233333333 35788999977644 445789999999999988766544 5577899
Q ss_pred EEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEE
Q 003087 165 CTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFV 244 (849)
Q Consensus 165 svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~L 244 (849)
|+.|. |+++++||+|.| |++|++..+.. ++...| |..-|++|.| |.+.+
T Consensus 365 ClQYr--~rlvVSGSSDnt-------------IRlwdi~~G~c------------LRvLeG--HEeLvRciRF--d~krI 413 (499)
T KOG0281|consen 365 CLQYR--DRLVVSGSSDNT-------------IRLWDIECGAC------------LRVLEG--HEELVRCIRF--DNKRI 413 (499)
T ss_pred ehhcc--CeEEEecCCCce-------------EEEEeccccHH------------HHHHhc--hHHhhhheee--cCcee
Confidence 99995 899999998874 99999987632 223456 9999999999 99999
Q ss_pred EEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecCCc
Q 003087 245 ATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSGL 322 (849)
Q Consensus 245 As~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~~~ 322 (849)
+||+.||+|++||+...... .-+..+ +. ..+. .+|.+.|..+-| .+-+|++.+.|.+|-|||+..+.
T Consensus 414 VSGaYDGkikvWdl~aaldp--ra~~~~-----~C-l~~l--v~hsgRVFrLQF-D~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 414 VSGAYDGKIKVWDLQAALDP--RAPAST-----LC-LRTL--VEHSGRVFRLQF-DEFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred eeccccceEEEEecccccCC--cccccc-----hH-HHhh--hhccceeEEEee-cceEEEeccCCCeEEEEEcCCCC
Confidence 99999999999999875210 000000 00 0011 145567888887 33468888999999999998765
No 56
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=6.7e-20 Score=184.45 Aligned_cols=238 Identities=13% Similarity=0.196 Sum_probs=174.3
Q ss_pred cceEEEEEcCCCCeE-EEE-eCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECC-CCCEEEEEeCCCcEEEEecC-Cc
Q 003087 11 KKQVSLFISPRGERV-AVA-AVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSE-SHDVLGIVDDTHTVYFFKAN-GE 86 (849)
Q Consensus 11 ~~v~slafSPdG~~L-Asa-s~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSP-DG~~LAs~~~dgtIrlWd~~-g~ 86 (849)
+.+..|+||++..-+ +++ +||+++||+.. ....|+..++. |...|-++.|++ +++.+.++|.|||||||+.+ ++
T Consensus 61 D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~-~~s~Pi~~~kE-H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 61 DGLFDVAWSENHENQVIAASGDGSLRLFDLT-MPSKPIHKFKE-HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cceeEeeecCCCcceEEEEecCceEEEeccC-CCCcchhHHHh-hhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 667889999988644 444 47899999943 33456655543 467899999998 67777888999999999987 66
Q ss_pred cceecccccccccccEEEEEecCC-cccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQDE-TDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVIC 165 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~~-~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~s 165 (849)
.+.+..++ ++.|...+|+|. .. -|+++|.||++++||+...+... .+..| ...|.|
T Consensus 139 Sv~Tf~gh----~~~Iy~a~~sp~~~n-------lfas~Sgd~~l~lwdvr~~gk~~-----------~i~ah-~~Eil~ 195 (311)
T KOG0277|consen 139 SVQTFNGH----NSCIYQAAFSPHIPN-------LFASASGDGTLRLWDVRSPGKFM-----------SIEAH-NSEILC 195 (311)
T ss_pred ceEeecCC----ccEEEEEecCCCCCC-------eEEEccCCceEEEEEecCCCcee-----------EEEec-cceeEe
Confidence 67776553 367899999982 22 25667999999999987533211 12223 346999
Q ss_pred EEEcC-CCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCC-CE
Q 003087 166 TDYHP-ELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQG-KF 243 (849)
Q Consensus 166 vafsP-dg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG-~~ 243 (849)
..|+- +.++||+||.|+ .|+.||+..-. .++. ...| |+-.|++|.|||-- .+
T Consensus 196 cdw~ky~~~vl~Tg~vd~-------------~vr~wDir~~r--~pl~---------eL~g--h~~AVRkvk~Sph~~~l 249 (311)
T KOG0277|consen 196 CDWSKYNHNVLATGGVDN-------------LVRGWDIRNLR--TPLF---------ELNG--HGLAVRKVKFSPHHASL 249 (311)
T ss_pred ecccccCCcEEEecCCCc-------------eEEEEehhhcc--ccce---------eecC--CceEEEEEecCcchhhH
Confidence 99986 778899998886 48999987531 1221 2345 88999999999965 67
Q ss_pred EEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEec--CCEEEEEEeCCcEEEEE
Q 003087 244 VATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWS--DNILILARKSSIITMID 317 (849)
Q Consensus 244 LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~--D~~la~a~~dgti~lwd 317 (849)
|||++.|-|++|||...+.-.+.+.. .|..-|..+-||+ .+.+|+++.|+.+.||+
T Consensus 250 LaSasYDmT~riw~~~~~ds~~e~~~------------------~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 250 LASASYDMTVRIWDPERQDSAIETVD------------------HHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred hhhccccceEEecccccchhhhhhhh------------------ccceEEeccccccccCceeeecccccceeeec
Confidence 99999999999999985422122221 1333477788886 46799999999999998
No 57
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.83 E-value=6.1e-19 Score=178.21 Aligned_cols=244 Identities=14% Similarity=0.158 Sum_probs=179.7
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeec-CCCCEEEEEECC-CCCEEEEEeCCCcEEEEecC-
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCT-GLGASIYGAWSE-SHDVLGIVDDTHTVYFFKAN- 84 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~-~~~~v~~vafSP-DG~~LAs~~~dgtIrlWd~~- 84 (849)
+.++|.+|+|+-||..||+|+ |+++.+|+.+.. ......... +++.|..++|+| ...++|+++.|.+|++||..
T Consensus 19 ~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~--r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~ 96 (313)
T KOG1407|consen 19 HVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD--RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS 96 (313)
T ss_pred hhhcceEEEEcccCceeeecccCCceEEEEecch--hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEecc
Confidence 458899999999999999997 789999997643 111112222 356888999997 56899999999999999985
Q ss_pred CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceE
Q 003087 85 GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVI 164 (849)
Q Consensus 85 g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~ 164 (849)
|+.+.++...-. =..+.++|++. ++++.+.|..|...|..+-+.....+ ++..++
T Consensus 97 ~k~~~~i~~~~e-----ni~i~wsp~g~-------~~~~~~kdD~it~id~r~~~~~~~~~-------------~~~e~n 151 (313)
T KOG1407|consen 97 GKCTARIETKGE-----NINITWSPDGE-------YIAVGNKDDRITFIDARTYKIVNEEQ-------------FKFEVN 151 (313)
T ss_pred CcEEEEeeccCc-----ceEEEEcCCCC-------EEEEecCcccEEEEEecccceeehhc-------------ccceee
Confidence 777666644321 12456666442 46677899999999988655433322 234589
Q ss_pred EEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEE
Q 003087 165 CTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFV 244 (849)
Q Consensus 165 svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~L 244 (849)
-+.|+-++.++....+.|+ |.+-..- .++++.+. +. |.....+|.|+|+|+++
T Consensus 152 e~~w~~~nd~Fflt~GlG~-------------v~ILsyp---sLkpv~si---------~A--H~snCicI~f~p~Gryf 204 (313)
T KOG1407|consen 152 EISWNNSNDLFFLTNGLGC-------------VEILSYP---SLKPVQSI---------KA--HPSNCICIEFDPDGRYF 204 (313)
T ss_pred eeeecCCCCEEEEecCCce-------------EEEEecc---cccccccc---------cc--CCcceEEEEECCCCceE
Confidence 9999988887765444432 5443332 23443322 23 77888999999999999
Q ss_pred EEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecCCcc
Q 003087 245 ATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVLSGLK 323 (849)
Q Consensus 245 As~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~~~ 323 (849)
|+|+.|-.++|||++...| ++.++ .+..+|..++||-||+ ||+|+.|..|-|=+++||.+
T Consensus 205 A~GsADAlvSLWD~~ELiC-~R~is------------------RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~ 265 (313)
T KOG1407|consen 205 ATGSADALVSLWDVDELIC-ERCIS------------------RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDR 265 (313)
T ss_pred eeccccceeeccChhHhhh-heeec------------------cccCceEEEEeccCcceeeccCccceEEeEecccCCe
Confidence 9999999999999997765 45554 2346899999999997 67999999999999999986
Q ss_pred cc
Q 003087 324 VK 325 (849)
Q Consensus 324 l~ 325 (849)
+-
T Consensus 266 ~~ 267 (313)
T KOG1407|consen 266 VW 267 (313)
T ss_pred EE
Confidence 54
No 58
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.83 E-value=8.7e-19 Score=184.26 Aligned_cols=260 Identities=15% Similarity=0.188 Sum_probs=181.1
Q ss_pred cccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-
Q 003087 7 PRKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN- 84 (849)
Q Consensus 7 ~~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~- 84 (849)
.++.+.|.+|+.+|+.+++|+|+ |+...||+..++ ...+.++. +...|+++.||.||++||+|+.+|.|+||+..
T Consensus 61 ~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g--e~~~eltg-HKDSVt~~~FshdgtlLATGdmsG~v~v~~~st 137 (399)
T KOG0296|consen 61 DKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG--EFAGELTG-HKDSVTCCSFSHDGTLLATGDMSGKVLVFKVST 137 (399)
T ss_pred hhcCCceEEEEeCCCCceEEecCCCceEEEEEccCC--cceeEecC-CCCceEEEEEccCceEEEecCCCccEEEEEccc
Confidence 46778999999999999999997 678899997754 23444443 37889999999999999999999999999997
Q ss_pred CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceE
Q 003087 85 GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVI 164 (849)
Q Consensus 85 g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~ 164 (849)
|.....+... . .-|--|.+.|.+. .|+.++.||.+-.|.+..+...+ .++| |...++
T Consensus 138 g~~~~~~~~e---~-~dieWl~WHp~a~-------illAG~~DGsvWmw~ip~~~~~k-----------v~~G-h~~~ct 194 (399)
T KOG0296|consen 138 GGEQWKLDQE---V-EDIEWLKWHPRAH-------ILLAGSTDGSVWMWQIPSQALCK-----------VMSG-HNSPCT 194 (399)
T ss_pred CceEEEeecc---c-CceEEEEeccccc-------EEEeecCCCcEEEEECCCcceee-----------EecC-CCCCcc
Confidence 5554444311 1 2244466667332 24445899999999997643222 3444 566799
Q ss_pred EEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCc--------------------ccceecccc-------
Q 003087 165 CTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLEL--------------------EQLYTTQIE------- 217 (849)
Q Consensus 165 svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~--------------------~~l~~~~~~------- 217 (849)
+=.|.|||+.++++..|+| |++|+..++..+ ..+++...+
T Consensus 195 ~G~f~pdGKr~~tgy~dgt-------------i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~ 261 (399)
T KOG0296|consen 195 CGEFIPDGKRILTGYDDGT-------------IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVN 261 (399)
T ss_pred cccccCCCceEEEEecCce-------------EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEc
Confidence 9999999999999988874 777877553111 001111111
Q ss_pred ----ceeeccCC------Cccccc---cceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCC
Q 003087 218 ----GLYCEPKG------HEVQLA---HPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFD 284 (849)
Q Consensus 218 ----~~~~~~~g------~~h~~~---V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~ 284 (849)
..+...++ ..+... |-++.||.+=.+.|+|+.||+|.|||+...+. .+++
T Consensus 262 ~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~-R~~c---------------- 324 (399)
T KOG0296|consen 262 NGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL-RHIC---------------- 324 (399)
T ss_pred cccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh-heec----------------
Confidence 11111111 003334 44455555667789999999999999997643 1222
Q ss_pred CCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecCCcccc
Q 003087 285 GRTKPISDITDFAWWSDNILILARKSSIITMIDVLSGLKVK 325 (849)
Q Consensus 285 ~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~~~~l~ 325 (849)
.|..+|.++.|-++..|+++..||+|+.||..+|+.+.
T Consensus 325 ---~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~ 362 (399)
T KOG0296|consen 325 ---EHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKF 362 (399)
T ss_pred ---cCCCceEEEEEcCcchheeeccCceEEeeeccccceEE
Confidence 24567999999886678899999999999999998544
No 59
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=4.4e-19 Score=203.83 Aligned_cols=249 Identities=13% Similarity=0.088 Sum_probs=170.3
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCC--------------------------------C-----------CCc
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDD--------------------------------D-----------YQE 44 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~--------------------------------~-----------~~~ 44 (849)
+-+.||++-|||||+|||+|+ |+-|+||.+.. . ...
T Consensus 266 h~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s 345 (712)
T KOG0283|consen 266 HKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQS 345 (712)
T ss_pred cCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCC
Confidence 458999999999999999998 77899997654 0 000
Q ss_pred ceee-------e------ee-cCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccceecccccccccccEEEEEecCC
Q 003087 45 PCGI-------F------NC-TGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDE 110 (849)
Q Consensus 45 ~~~~-------~------~~-~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~ 110 (849)
+... + .. +|.+.|..|+|| ..++|.|++.|.|||||++..+.+.....| +..|.+|+|.|.
T Consensus 346 ~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS-Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~H----ndfVTcVaFnPv 420 (712)
T KOG0283|consen 346 PCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS-KNNFLLSSSMDKTVRLWHPGRKECLKVFSH----NDFVTCVAFNPV 420 (712)
T ss_pred ccccCCCccccccccchhhhhccchhheecccc-cCCeeEeccccccEEeecCCCcceeeEEec----CCeeEEEEeccc
Confidence 0000 0 01 236789999999 556888999999999999986654444333 467999999982
Q ss_pred cccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCC
Q 003087 111 TDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSG 190 (849)
Q Consensus 111 ~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~ 190 (849)
- +..|++++-||.+|+|+|...+...+.. ...-|++|.|+|||+..++|+..|
T Consensus 421 D------DryFiSGSLD~KvRiWsI~d~~Vv~W~D-------------l~~lITAvcy~PdGk~avIGt~~G-------- 473 (712)
T KOG0283|consen 421 D------DRYFISGSLDGKVRLWSISDKKVVDWND-------------LRDLITAVCYSPDGKGAVIGTFNG-------- 473 (712)
T ss_pred C------CCcEeecccccceEEeecCcCeeEeehh-------------hhhhheeEEeccCCceEEEEEecc--------
Confidence 1 2257788999999999998655533322 224599999999999998888875
Q ss_pred CCCCceeeEEEecCCcCcccceeccccceeeccCC--CccccccceEEEccCCC-EEEEEeCCCcEEEEecCCCcccccc
Q 003087 191 NSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKG--HEVQLAHPKVLISPQGK-FVATSDTNGCLYIFEMDKDNFSLSK 267 (849)
Q Consensus 191 ~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g--~~h~~~V~~vafSPDG~-~LAs~s~Dgtv~LWd~~~~~~~l~~ 267 (849)
. .++++..+.. ++ .+ ..+..+.+ ..|. .|..+.|.|... .|...+.|..|||+|...... +.+
T Consensus 474 ---~--C~fY~t~~lk-~~--~~----~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~l-v~K 539 (712)
T KOG0283|consen 474 ---Y--CRFYDTEGLK-LV--SD----FHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDL-VHK 539 (712)
T ss_pred ---E--EEEEEccCCe-EE--Ee----eeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhh-hhh
Confidence 2 5677766531 11 01 11111111 0133 799999987554 355568999999999954432 455
Q ss_pred cccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEec
Q 003087 268 FACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVL 319 (849)
Q Consensus 268 ~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~ 319 (849)
|.... ....-....|++||+ |++|+.|..|.||+..
T Consensus 540 fKG~~----------------n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 540 FKGFR----------------NTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred hcccc----------------cCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 55211 012345678999997 7789999999999973
No 60
>KOG1797 consensus Uncharacterized conserved protein (Neuroblastoma-amplified protein) [Function unknown]
Probab=99.82 E-value=2.3e-22 Score=231.41 Aligned_cols=305 Identities=14% Similarity=0.080 Sum_probs=257.3
Q ss_pred hhccccCCccccCCcccchhhHHHHHHHHHHHHHHHHHHHHhhhcCCchHHHHHhhcCcHHHHHHHHHHcCCcchHHHHH
Q 003087 471 LHLTNQYKFSETEDDEYSQIWDYRIARLQLLQFGDRLETYLGINMGRYYAEYSKFRIMPIHEAGVNLAESGKIGALNLLF 550 (849)
Q Consensus 471 L~~t~~~~~~~~~~~~~~~~~~~~~~r~~ll~~ldRL~t~~~i~~~~f~~~~~~Fr~~~lv~~A~~~A~~g~i~aL~~L~ 550 (849)
+..|+.. +...+|+...+.|.+|..|..+++|-.||+||+ |.||++..+= +|+..++-..|.-+|..|.+++|.++|
T Consensus 4 ~~~tnh~-~~k~~d~~s~~l~~~r~~r~~~~~~~~~ld~y~-is~~~~t~~~-~~~~~~~~~~~~~~~~~~~~~~l~l~~ 80 (1660)
T KOG1797|consen 4 MRGTNHE-KEKHDDENSKILLKERCDRVAVMSYARQLDIYQ-ISGEILTHES-SVQVLEETSPEYCILQFSSSSTLILSS 80 (1660)
T ss_pred ccccccc-hhhcccHhHHHHHHHHHHHHHHHHHHHhhccee-eccceeeecc-ceeeCccccchhhhhhccCcceeeeec
Confidence 4566665 667777777889999999999999999999999 9999887732 999999999999999999999999999
Q ss_pred HHCCCCccHHHHHHHhhCCCCCCcccccccCCCCCCCCCccCccccchhhhhhhHHhhcCCCccccccccccchhhhccc
Q 003087 551 KRHPYSLASSVLQILAAIPETVPVQTYTQLLPGRSPPMTVAMREEDWVECDKMVRFIRRLPENHEISDQIRTEPIVRRSL 630 (849)
Q Consensus 551 ~rh~~~l~p~~l~ILs~lPEt~~P~~Y~~LLP~~~~~~~~~~r~~Dw~e~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~ 630 (849)
.+|| .+.|+.++| .|..++|.-.++. .|+.||++|. |+.++| +++....+.++++|.++..
T Consensus 81 ~~~p------~~~v~~~~~------~y~~~~p~~~~~~---i~~~~~~~c~-m~~f~n--~~~~~nd~~i~~~~v~~y~- 141 (1660)
T KOG1797|consen 81 RSTP------HIDVFDSMG------AYLYDIPLELHEG---IFDVNSAICG-MQTFEN--YSSSSNDKFIEILYVLQYS- 141 (1660)
T ss_pred cCCc------hHHHHHhhh------HHHhhCcCcCCCc---ccccccceec-eeEeec--CcCCCCccceeeeeeeeec-
Confidence 9999 489999999 7999999887665 5899999999 888888 4444456889999988633
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHcCChhHHHHHHhHHHHHHhhcccCCCCccccccchHHHhc
Q 003087 631 RSLWPSINELTIWYKSRARDIDCYSGQLDNCLCLIDFACRKGLTELQQFHEDTSYLYQLIYSDETDGEISFSMSLTAWEQ 710 (849)
Q Consensus 631 ~~~~~~~~~l~~Wy~~RA~~ID~~sG~~~~al~Ll~~~~~~g~~~L~~l~~~l~~L~~lvye~~~~~~~~~~lsL~~~e~ 710 (849)
+|.. |++|+..+|.++++..++++|+..|+..|.+...+|..++...|........+|.+++.+|+-
T Consensus 142 ---~~~s----------a~~i~~~s~~~~~~~~~~di~~~~~~t~l~q~~~~l~~~h~~~~t~~v~~~~~~s~~~~~~~~ 208 (1660)
T KOG1797|consen 142 ---GVFS----------AFKIGRLSKYVKMWTVQLDIGQTGSFTVLPQYNLLLVASHHKESTSLVPPAGLCSFRMMDMDP 208 (1660)
T ss_pred ---Ccch----------hhhcchhhhhhhheeEEEeecccCCcccchHHHHHHHHHhhhhhhccCCcceeeeeeccCchh
Confidence 4433 999999999999999999999999999999999999999999998877666678999999998
Q ss_pred CChHHHHHHhhCCCCchhHHHHhhhccccccccccccccccccccccccccCCCccCChHHHHHHHHHHhhhcchHHHHH
Q 003087 711 LSDYEKFNTMLKGVKEENVIKRLRDKAIPFMQSRSHYLTSVGQEHVMVDQSSADHEKDESFLVRWLKKIALENKVEICLL 790 (849)
Q Consensus 711 l~~~~~~~~lL~~~~~~~v~~dl~~~v~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wl~~~a~~~~l~~~~~ 790 (849)
+ .|+|++++. ..+.++| +||+.. +- +.......+|..+||++++.++++.+|.
T Consensus 209 ~--~e~~~i~~~--~~~~~~r------~pf~~~-f~---------------~~~~~~~~sf~~~~l~~~~~~~~~~l~~- 261 (1660)
T KOG1797|consen 209 F--VEPIRISTP--DGGFFSR------LPFSTS-FM---------------SYLPRMSLSFDSQLLVSVSTSGSLYLFE- 261 (1660)
T ss_pred h--hceeeeecC--CCCeEEe------chhHHH-Hh---------------hhchhhHHHHHHHHHHHHhccCceeEEe-
Confidence 8 999999887 4455665 899886 21 1122236789999999999988888871
Q ss_pred HHHhcCccccCCCccCCHHHHHHHHHHHhhcCCCCChHHHHHHHHhcCCCCCC
Q 003087 791 VIEEGCTEFQSKGFFRDESEAIDCALQCIYLCTATDKWSTMAAILSKLPQKQG 843 (849)
Q Consensus 791 ~~e~s~~d~~~~~~~~~~~~~~~~aLaciY~~~~~~~~~~~~~Il~~lp~~~~ 843 (849)
-++..-.++.+..+.++.+++|+|.|+-+|.|..|+.|..++|...+
T Consensus 262 ------i~~~~v~f~~~~i~~vd~~~qcl~~sel~dk~~v~~~~~~~l~k~~~ 308 (1660)
T KOG1797|consen 262 ------IPSLHVKFSFNFISGVDPVDQCLVDSELSDKIAVIYDNGYLLRKSLE 308 (1660)
T ss_pred ------ecceeEEEecccccccCHHHHHHHHHhhhhhhheeccchhhhccchh
Confidence 13334468899999999999999999999999999999999986543
No 61
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.82 E-value=5.8e-19 Score=181.60 Aligned_cols=219 Identities=16% Similarity=0.199 Sum_probs=157.4
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCC-------------CCc--c-eeeeeecCCCCEEEEEECCCCCEEEE
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDD-------------YQE--P-CGIFNCTGLGASIYGAWSESHDVLGI 71 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~-------------~~~--~-~~~~~~~~~~~v~~vafSPDG~~LAs 71 (849)
+...+.+-+|||||.++|+|| |-.|+|++.+.- .+. | +.++ ..|...|+.+.|.|-.++|+|
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTl-YDH~devn~l~FHPre~ILiS 189 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTL-YDHVDEVNDLDFHPRETILIS 189 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeeh-hhccCcccceeecchhheEEe
Confidence 336788999999999999998 568999997610 000 1 1111 123567899999999999999
Q ss_pred EeCCCcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCC
Q 003087 72 VDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSS 151 (849)
Q Consensus 72 ~~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~ 151 (849)
|+.|+||+|+|..-....+-.+- ..-..+|.++.|.|.+.. +++++.-.++|+||+.+-++ +.. .+
T Consensus 190 ~srD~tvKlFDfsK~saKrA~K~-~qd~~~vrsiSfHPsGef-------llvgTdHp~~rlYdv~T~Qc--fvs----an 255 (430)
T KOG0640|consen 190 GSRDNTVKLFDFSKTSAKRAFKV-FQDTEPVRSISFHPSGEF-------LLVGTDHPTLRLYDVNTYQC--FVS----AN 255 (430)
T ss_pred ccCCCeEEEEecccHHHHHHHHH-hhccceeeeEeecCCCce-------EEEecCCCceeEEeccceeE--eee----cC
Confidence 99999999999863211111000 001247999999996643 44556778999999987554 111 11
Q ss_pred cceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccc
Q 003087 152 GLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLA 231 (849)
Q Consensus 152 ~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~ 231 (849)
+ ..+|+.+|++|.||+.|++-++||-|+ .|++||--++.....|.. .|.| ..
T Consensus 256 P---d~qht~ai~~V~Ys~t~~lYvTaSkDG-------------~IklwDGVS~rCv~t~~~--------AH~g----se 307 (430)
T KOG0640|consen 256 P---DDQHTGAITQVRYSSTGSLYVTASKDG-------------AIKLWDGVSNRCVRTIGN--------AHGG----SE 307 (430)
T ss_pred c---ccccccceeEEEecCCccEEEEeccCC-------------cEEeeccccHHHHHHHHh--------hcCC----ce
Confidence 1 126677899999999999999999886 389998655433222211 1222 48
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccc
Q 003087 232 HPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACG 271 (849)
Q Consensus 232 V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~ 271 (849)
|.+..|+-+|++|.|.|.|.+|+||.+.++++ ++.++..
T Consensus 308 vcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~-l~~YtGA 346 (430)
T KOG0640|consen 308 VCSAVFTKNGKYILSSGKDSTVKLWEISTGRM-LKEYTGA 346 (430)
T ss_pred eeeEEEccCCeEEeecCCcceeeeeeecCCce-EEEEecC
Confidence 99999999999999999999999999999987 7777654
No 62
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.4e-18 Score=195.13 Aligned_cols=241 Identities=12% Similarity=0.168 Sum_probs=177.9
Q ss_pred ccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Ccc
Q 003087 10 TKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEE 87 (849)
Q Consensus 10 ~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~ 87 (849)
++.|++|.|+|+|++||+|- ++.|.|||..... .+..+..++.+.|-+++|+ +..|.+|+.||.|..+|+. ++.
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k--~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~ 292 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQK--KTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH 292 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhcc--ccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchh
Confidence 57799999999999999995 7899999976432 1222222246788999999 8899999999999999986 444
Q ss_pred ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEE
Q 003087 88 ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTD 167 (849)
Q Consensus 88 ~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sva 167 (849)
......+| ...|+++.+++|+...+| .+.|+.+.+||....... +++. .|...|.+++
T Consensus 293 ~~~~~~~H---~qeVCgLkws~d~~~lAS-------GgnDN~~~Iwd~~~~~p~-----------~~~~-~H~aAVKA~a 350 (484)
T KOG0305|consen 293 VVSTLQGH---RQEVCGLKWSPDGNQLAS-------GGNDNVVFIWDGLSPEPK-----------FTFT-EHTAAVKALA 350 (484)
T ss_pred hhhhhhcc---cceeeeeEECCCCCeecc-------CCCccceEeccCCCcccc-----------EEEe-ccceeeeEee
Confidence 44422333 356999999987765444 489999999998432221 2233 4567899999
Q ss_pred EcC-CCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEE
Q 003087 168 YHP-ELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVAT 246 (849)
Q Consensus 168 fsP-dg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs 246 (849)
|+| ...+||+||+... ..|++|++.++..+..+. ....|.+|.|||..+-|++
T Consensus 351 wcP~q~~lLAsGGGs~D-----------~~i~fwn~~~g~~i~~vd---------------tgsQVcsL~Wsk~~kEi~s 404 (484)
T KOG0305|consen 351 WCPWQSGLLATGGGSAD-----------RCIKFWNTNTGARIDSVD---------------TGSQVCSLIWSKKYKELLS 404 (484)
T ss_pred eCCCccCceEEcCCCcc-----------cEEEEEEcCCCcEecccc---------------cCCceeeEEEcCCCCEEEE
Confidence 999 5668898876532 359999998764322221 1247899999999977776
Q ss_pred Ee--CCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecCC
Q 003087 247 SD--TNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVLSG 321 (849)
Q Consensus 247 ~s--~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~ 321 (849)
++ .++.|.||+.++... +..+ .+|...|..++|||||. +++|+.|.|+++|++-+.
T Consensus 405 thG~s~n~i~lw~~ps~~~-~~~l------------------~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 405 THGYSENQITLWKYPSMKL-VAEL------------------LGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ecCCCCCcEEEEeccccce-eeee------------------cCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 64 367899999997432 1222 25778899999999985 889999999999999764
No 63
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.81 E-value=1.6e-18 Score=182.99 Aligned_cols=241 Identities=11% Similarity=0.104 Sum_probs=170.1
Q ss_pred cceEEEEE---cCCCCeEEEEe-CCeEEEEecCCCCCcceeeeee-cCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCC
Q 003087 11 KKQVSLFI---SPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNC-TGLGASIYGAWSESHDVLGIVDDTHTVYFFKANG 85 (849)
Q Consensus 11 ~~v~slaf---SPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~-~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g 85 (849)
++|.++++ .+-..++++|| |+++++|..+.+.-........ +|...|.+|+-.+||..++||+.|.+|+||+...
T Consensus 145 ~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~ 224 (423)
T KOG0313|consen 145 GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVET 224 (423)
T ss_pred cceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCC
Confidence 44554443 33334688888 7899999765432111111111 2367889999999999999999999999999321
Q ss_pred cc--------------------------ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCC
Q 003087 86 EE--------------------------ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDP 139 (849)
Q Consensus 86 ~~--------------------------~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~ 139 (849)
.+ +.++ .++..+|.+|.|+|.. .+++++-|.+|+.||+.+++
T Consensus 225 ~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl----~GHt~~Vs~V~w~d~~--------v~yS~SwDHTIk~WDletg~ 292 (423)
T KOG0313|consen 225 DEEDELESSSNRRRKKQKREKEGGTRTPLVTL----EGHTEPVSSVVWSDAT--------VIYSVSWDHTIKVWDLETGG 292 (423)
T ss_pred CccccccccchhhhhhhhhhhcccccCceEEe----cccccceeeEEEcCCC--------ceEeecccceEEEEEeeccc
Confidence 10 1111 1233578889987721 35677999999999999988
Q ss_pred CcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccce
Q 003087 140 SASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGL 219 (849)
Q Consensus 140 ~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~ 219 (849)
....+ .+ +...+|++++|..++||+||.|. .|++||+..+. . .+...
T Consensus 293 ~~~~~-----------~~--~ksl~~i~~~~~~~Ll~~gssdr-------------~irl~DPR~~~-g-s~v~~----- 339 (423)
T KOG0313|consen 293 LKSTL-----------TT--NKSLNCISYSPLSKLLASGSSDR-------------HIRLWDPRTGD-G-SVVSQ----- 339 (423)
T ss_pred ceeee-----------ec--CcceeEeecccccceeeecCCCC-------------ceeecCCCCCC-C-ceeEE-----
Confidence 74332 11 23689999999999999999887 38999987652 1 12121
Q ss_pred eeccCCCccccccceEEEccCCC-EEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEE
Q 003087 220 YCEPKGHEVQLAHPKVLISPQGK-FVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAW 298 (849)
Q Consensus 220 ~~~~~g~~h~~~V~~vafSPDG~-~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaw 298 (849)
.+-| |+++|.+|.|||-.. +|+|++.||++++||+.+..-++-... .|...|.+|.|
T Consensus 340 --s~~g--H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~------------------~h~DKvl~vdW 397 (423)
T KOG0313|consen 340 --SLIG--HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA------------------GHNDKVLSVDW 397 (423)
T ss_pred --eeec--chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec------------------cCCceEEEEec
Confidence 2345 999999999999665 599999999999999986532222211 34567999999
Q ss_pred ecCCEEEEEEeCCcEEEEEe
Q 003087 299 WSDNILILARKSSIITMIDV 318 (849)
Q Consensus 299 s~D~~la~a~~dgti~lwdl 318 (849)
+-.+-|++|+.|.+|+|..-
T Consensus 398 ~~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 398 NEGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred cCCceEEeccCcceEEEecc
Confidence 88778999999999999763
No 64
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.81 E-value=1e-19 Score=182.50 Aligned_cols=238 Identities=11% Similarity=0.128 Sum_probs=178.9
Q ss_pred cccceEEEEEcCCCCeEEEEeCC-eEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCcc
Q 003087 9 KTKKQVSLFISPRGERVAVAAVN-QVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEE 87 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~ 87 (849)
+.+.||+..+..|..+-|+|+.+ +.++|+...+ ..+..+. +..-|.++|||.|.+.|.+|+.+.-+||+|++...
T Consensus 58 hkgavw~~~l~~na~~aasaaadftakvw~a~tg--delhsf~--hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~ 133 (334)
T KOG0278|consen 58 HKGAVWSATLNKNATRAASAAADFTAKVWDAVTG--DELHSFE--HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK 133 (334)
T ss_pred cCcceeeeecCchhhhhhhhcccchhhhhhhhhh--hhhhhhh--hhheeeeEEecccchhhhccchHHHhhhhhccCCC
Confidence 55889999999999999999854 8899997542 2233333 23456899999999999999999999999997432
Q ss_pred --ceecccccccccccEEEEEec-CCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceE
Q 003087 88 --ITRFTNKHLKVSLPIIGLIAQ-DETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVI 164 (849)
Q Consensus 88 --~~~l~~~~~~~~~~V~~l~fs-~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~ 164 (849)
...+.++ ...|..+.|- .+. .|.+.++|++||+||..++...+.++ ++..|+
T Consensus 134 App~E~~gh----tg~Ir~v~wc~eD~--------~iLSSadd~tVRLWD~rTgt~v~sL~-------------~~s~Vt 188 (334)
T KOG0278|consen 134 APPKEISGH----TGGIRTVLWCHEDK--------CILSSADDKTVRLWDHRTGTEVQSLE-------------FNSPVT 188 (334)
T ss_pred CCchhhcCC----CCcceeEEEeccCc--------eEEeeccCCceEEEEeccCcEEEEEe-------------cCCCCc
Confidence 3333333 3567777773 222 24444899999999999988755432 345699
Q ss_pred EEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEE
Q 003087 165 CTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFV 244 (849)
Q Consensus 165 svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~L 244 (849)
++.+|+||++|.++-.. .|++|+..+- ..+.+.. ---.|.+.+++|+-.++
T Consensus 189 SlEvs~dG~ilTia~gs--------------sV~Fwdaksf---~~lKs~k------------~P~nV~SASL~P~k~~f 239 (334)
T KOG0278|consen 189 SLEVSQDGRILTIAYGS--------------SVKFWDAKSF---GLLKSYK------------MPCNVESASLHPKKEFF 239 (334)
T ss_pred ceeeccCCCEEEEecCc--------------eeEEeccccc---cceeecc------------CccccccccccCCCceE
Confidence 99999999998665333 3899998762 2222111 11257899999999999
Q ss_pred EEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecCCc
Q 003087 245 ATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVLSGL 322 (849)
Q Consensus 245 As~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~~ 322 (849)
++|+.|+.++-+|..++.. +-.+. ++|.++|.+|.|+|||. .|+|+.||+|+||.+..++
T Consensus 240 VaGged~~~~kfDy~TgeE-i~~~n-----------------kgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 240 VAGGEDFKVYKFDYNTGEE-IGSYN-----------------KGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred EecCcceEEEEEeccCCce-eeecc-----------------cCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 9999999999999998854 22221 46778999999999997 6899999999999988766
No 65
>PTZ00420 coronin; Provisional
Probab=99.81 E-value=6e-18 Score=197.02 Aligned_cols=233 Identities=11% Similarity=0.091 Sum_probs=155.7
Q ss_pred cccceEEEEEcCC-CCeEEEEe-CCeEEEEecCCCCC------cceeeeeecCCCCEEEEEECCCCCE-EEEEeCCCcEE
Q 003087 9 KTKKQVSLFISPR-GERVAVAA-VNQVTILQKDDDYQ------EPCGIFNCTGLGASIYGAWSESHDV-LGIVDDTHTVY 79 (849)
Q Consensus 9 ~~~~v~slafSPd-G~~LAsas-~~~i~iw~~~~~~~------~~~~~~~~~~~~~v~~vafSPDG~~-LAs~~~dgtIr 79 (849)
+.+.|.+++|+|+ +++||+|+ |++|+||+...+.. .+...+. .+...|.+++|+|+|.. ||+|+.||+|+
T Consensus 73 H~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~-gH~~~V~sVaf~P~g~~iLaSgS~DgtIr 151 (568)
T PTZ00420 73 HTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK-GHKKKISIIDWNPMNYYIMCSSGFDSFVN 151 (568)
T ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee-cCCCcEEEEEECCCCCeEEEEEeCCCeEE
Confidence 4478999999997 89999998 68999999764211 1112222 23568999999999985 57999999999
Q ss_pred EEecC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccc
Q 003087 80 FFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQ 158 (849)
Q Consensus 80 lWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (849)
|||+. ++.+..+. + ...|.+++|++++.. |++.+.|++|++||+.++..... +.+|
T Consensus 152 IWDl~tg~~~~~i~-~----~~~V~SlswspdG~l-------Lat~s~D~~IrIwD~Rsg~~i~t-----------l~gH 208 (568)
T PTZ00420 152 IWDIENEKRAFQIN-M----PKKLSSLKWNIKGNL-------LSGTCVGKHMHIIDPRKQEIASS-----------FHIH 208 (568)
T ss_pred EEECCCCcEEEEEe-c----CCcEEEEEECCCCCE-------EEEEecCCEEEEEECCCCcEEEE-----------Eecc
Confidence 99997 54444442 2 246899999987543 45557899999999987654322 3333
Q ss_pred cCC----ceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccce
Q 003087 159 FPQ----NVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPK 234 (849)
Q Consensus 159 ~~~----~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~ 234 (849)
... .++...|+||+.+|+++|.++. +...|++||+.... .++... .... +...+..
T Consensus 209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~---------~~R~VkLWDlr~~~--~pl~~~-------~ld~--~~~~L~p 268 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDDNYILSTGFSKN---------NMREMKLWDLKNTT--SALVTM-------SIDN--ASAPLIP 268 (568)
T ss_pred cCCceeEEEEeeeEcCCCCEEEEEEcCCC---------CccEEEEEECCCCC--CceEEE-------EecC--CccceEE
Confidence 211 2445567899999999988852 11248999987531 122110 0011 2233344
Q ss_pred EEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE
Q 003087 235 VLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI 303 (849)
Q Consensus 235 vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~ 303 (849)
.-.+++|.++++|+.|++|++|++..+. +..+.. + .+..++..++|.|...
T Consensus 269 ~~D~~tg~l~lsGkGD~tIr~~e~~~~~--~~~l~~-----~-----------~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 269 HYDESTGLIYLIGKGDGNCRYYQHSLGS--IRKVNE-----Y-----------KSCSPFRSFGFLPKQI 319 (568)
T ss_pred eeeCCCCCEEEEEECCCeEEEEEccCCc--EEeecc-----c-----------ccCCCccceEEccccc
Confidence 5557789999999999999999997652 222210 1 1234567789999653
No 66
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2e-18 Score=193.94 Aligned_cols=252 Identities=16% Similarity=0.180 Sum_probs=184.3
Q ss_pred EEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cccceecccc
Q 003087 16 LFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEITRFTNK 94 (849)
Q Consensus 16 lafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~~~l~~~ 94 (849)
+.|| -++.||+|.+..|.+|+..++. ....+.. +...|++|.|+|+|++||+|-.+|+|.|||.. .+.+..+..+
T Consensus 183 ldWs-s~n~laValg~~vylW~~~s~~--v~~l~~~-~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~ 258 (484)
T KOG0305|consen 183 LDWS-SANVLAVALGQSVYLWSASSGS--VTELCSF-GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS 258 (484)
T ss_pred hhcc-cCCeEEEEecceEEEEecCCCc--eEEeEec-CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC
Confidence 6788 5679999999999999976542 2222222 25789999999999999999999999999986 4444454442
Q ss_pred cccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCce
Q 003087 95 HLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSL 174 (849)
Q Consensus 95 ~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~l 174 (849)
| ...|-++++... .+.+++.||.|..+|+........ +++ +|.+.|..+.|++||++
T Consensus 259 h---~~rvg~laW~~~---------~lssGsr~~~I~~~dvR~~~~~~~----------~~~-~H~qeVCgLkws~d~~~ 315 (484)
T KOG0305|consen 259 H---ASRVGSLAWNSS---------VLSSGSRDGKILNHDVRISQHVVS----------TLQ-GHRQEVCGLKWSPDGNQ 315 (484)
T ss_pred c---CceeEEEeccCc---------eEEEecCCCcEEEEEEecchhhhh----------hhh-cccceeeeeEECCCCCe
Confidence 3 356778887532 244568999999999986543211 133 55678999999999999
Q ss_pred EEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEcc-CCCEEEEEe--CCC
Q 003087 175 LSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISP-QGKFVATSD--TNG 251 (849)
Q Consensus 175 Las~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSP-DG~~LAs~s--~Dg 251 (849)
||+||+|+. +.+||.... +++.. ... |...|..++|+| ...+||||+ .|+
T Consensus 316 lASGgnDN~-------------~~Iwd~~~~---~p~~~---------~~~--H~aAVKA~awcP~q~~lLAsGGGs~D~ 368 (484)
T KOG0305|consen 316 LASGGNDNV-------------VFIWDGLSP---EPKFT---------FTE--HTAAVKALAWCPWQSGLLATGGGSADR 368 (484)
T ss_pred eccCCCccc-------------eEeccCCCc---cccEE---------Eec--cceeeeEeeeCCCccCceEEcCCCccc
Confidence 999999973 789998443 22211 122 888999999999 778999986 599
Q ss_pred cEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCC-EEEE--EEeCCcEEEEEecCCccccccC
Q 003087 252 CLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDN-ILIL--ARKSSIITMIDVLSGLKVKETD 328 (849)
Q Consensus 252 tv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~-~la~--a~~dgti~lwdl~~~~~l~~~~ 328 (849)
+|++|++.++.+ +...- ....|.++.|++.. .+++ |..++.|+||+.++++.+ ..-
T Consensus 369 ~i~fwn~~~g~~-i~~vd-------------------tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~-~~l 427 (484)
T KOG0305|consen 369 CIKFWNTNTGAR-IDSVD-------------------TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLV-AEL 427 (484)
T ss_pred EEEEEEcCCCcE-ecccc-------------------cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccccee-eee
Confidence 999999998754 22211 12569999999976 4554 567889999999997632 334
Q ss_pred CCCCCeEEEEEecc
Q 003087 329 PKLRGHVFLLESKS 342 (849)
Q Consensus 329 ~~~~g~~~~Le~~~ 342 (849)
.+|..+|+-|...+
T Consensus 428 ~gH~~RVl~la~SP 441 (484)
T KOG0305|consen 428 LGHTSRVLYLALSP 441 (484)
T ss_pred cCCcceeEEEEECC
Confidence 46777887777755
No 67
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.81 E-value=2.9e-19 Score=184.22 Aligned_cols=206 Identities=12% Similarity=0.145 Sum_probs=156.3
Q ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cccceeccc-cccc---ccccEEEEEecCCcccccccceeEEEEeCCC
Q 003087 54 LGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEITRFTN-KHLK---VSLPIIGLIAQDETDVQRSCLCSFTVFTSDG 128 (849)
Q Consensus 54 ~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~~~l~~-~~~~---~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg 128 (849)
...+.+..|||||++|++|+-||-|-|||.+ |+....+.- .+.. ...+|.++.|+.|....+++ +.||
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsG-------sqDG 285 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASG-------SQDG 285 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhcc-------CcCC
Confidence 4567899999999999999999999999986 654333321 1111 12579999999887765554 8999
Q ss_pred cEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCc
Q 003087 129 FLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLEL 208 (849)
Q Consensus 129 ~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~ 208 (849)
.|++|.+.+|.+...++ ..|..+|.|+.||.|+..+.++|.|.| +++--+.++
T Consensus 286 kIKvWri~tG~ClRrFd-----------rAHtkGvt~l~FSrD~SqiLS~sfD~t-------------vRiHGlKSG--- 338 (508)
T KOG0275|consen 286 KIKVWRIETGQCLRRFD-----------RAHTKGVTCLSFSRDNSQILSASFDQT-------------VRIHGLKSG--- 338 (508)
T ss_pred cEEEEEEecchHHHHhh-----------hhhccCeeEEEEccCcchhhcccccce-------------EEEeccccc---
Confidence 99999999999876544 245678999999999999999999986 454333332
Q ss_pred ccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCC
Q 003087 209 EQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTK 288 (849)
Q Consensus 209 ~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 288 (849)
.++..++| |...|+.+.|++||..+.|+|.||+|++|+..+..| +.+|.. +.++
T Consensus 339 ---------K~LKEfrG--HsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC-~~Tfk~-----------~~~d--- 392 (508)
T KOG0275|consen 339 ---------KCLKEFRG--HSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTEC-LSTFKP-----------LGTD--- 392 (508)
T ss_pred ---------hhHHHhcC--ccccccceEEcCCCCeEEEecCCccEEEecCcchhh-hhhccC-----------CCCc---
Confidence 22334567 999999999999999999999999999999999887 677652 2211
Q ss_pred CCCCcEEEEEecCC--EEEEEEeCCcEEEEEecCC
Q 003087 289 PISDITDFAWWSDN--ILILARKSSIITMIDVLSG 321 (849)
Q Consensus 289 ~~~~v~~vaws~D~--~la~a~~dgti~lwdl~~~ 321 (849)
.+|.+|---|-+ .+++....++|.|-++.+.
T Consensus 393 --~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ 425 (508)
T KOG0275|consen 393 --YPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ 425 (508)
T ss_pred --ccceeEEEcCCCCceEEEEcCCCeEEEEeccce
Confidence 345555544543 4778888999999888753
No 68
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.80 E-value=9.3e-19 Score=205.56 Aligned_cols=253 Identities=13% Similarity=0.148 Sum_probs=166.4
Q ss_pred cceEEEEEcCCCCeEEEEe---CCeEEEEecCCCCC--------cceeeee-ecCCCCEEEEEECCCCCEEEEEeCCCcE
Q 003087 11 KKQVSLFISPRGERVAVAA---VNQVTILQKDDDYQ--------EPCGIFN-CTGLGASIYGAWSESHDVLGIVDDTHTV 78 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas---~~~i~iw~~~~~~~--------~~~~~~~-~~~~~~v~~vafSPDG~~LAs~~~dgtI 78 (849)
+.|.+|..+|||..+|+|+ |+.++||+.+.-.. .+-..++ ..|.+.|.+|.|||||++||+|++|+.|
T Consensus 14 ~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v 93 (942)
T KOG0973|consen 14 KSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLV 93 (942)
T ss_pred eeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceE
Confidence 4589999999999999997 56788998642110 0111122 2346789999999999999999999999
Q ss_pred EEEecCC---ccceeccccc------------ccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCccc
Q 003087 79 YFFKANG---EEITRFTNKH------------LKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASI 143 (849)
Q Consensus 79 rlWd~~g---~~~~~l~~~~------------~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~ 143 (849)
-+|...+ .......+++ .++...|..|.++|+.. .+++++.|++|.+|+..+.+...
T Consensus 94 ~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-------~lvS~s~DnsViiwn~~tF~~~~- 165 (942)
T KOG0973|consen 94 MIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS-------LLVSVSLDNSVIIWNAKTFELLK- 165 (942)
T ss_pred EEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc-------EEEEecccceEEEEccccceeee-
Confidence 9999772 1111111111 11223455666665433 36777999999999987654433
Q ss_pred ccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeecc
Q 003087 144 SSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEP 223 (849)
Q Consensus 144 ~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~ 223 (849)
.+.|| ...|-+|.|.|-|+++|+-+.|+| |++|+... ...+...+.. |..-
T Consensus 166 ----------vl~~H-~s~VKGvs~DP~Gky~ASqsdDrt-------------ikvwrt~d-w~i~k~It~p----f~~~ 216 (942)
T KOG0973|consen 166 ----------VLRGH-QSLVKGVSWDPIGKYFASQSDDRT-------------LKVWRTSD-WGIEKSITKP----FEES 216 (942)
T ss_pred ----------eeecc-cccccceEECCccCeeeeecCCce-------------EEEEEccc-ceeeEeeccc----hhhC
Confidence 34445 456999999999999999999974 88998654 1122211111 1111
Q ss_pred CCCccccccceEEEccCCCEEEEEeC-C---CcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEe
Q 003087 224 KGHEVQLAHPKVLISPQGKFVATSDT-N---GCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWW 299 (849)
Q Consensus 224 ~g~~h~~~V~~vafSPDG~~LAs~s~-D---gtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws 299 (849)
. -..-...++|||||++||+... + -++.|-+..+-... ..+ -+|..++.-|+|.
T Consensus 217 ~---~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~-~~L------------------vGH~~p~evvrFn 274 (942)
T KOG0973|consen 217 P---LTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVD-KDL------------------VGHSAPVEVVRFN 274 (942)
T ss_pred C---CcceeeecccCCCcCeecchhhccCCcceeEEEecCCceee-eee------------------ecCCCceEEEEeC
Confidence 1 1234568999999999999864 2 25666555432110 011 1355677778888
Q ss_pred c------CC------------EEEEEEeCCcEEEEEecCCc
Q 003087 300 S------DN------------ILILARKSSIITMIDVLSGL 322 (849)
Q Consensus 300 ~------D~------------~la~a~~dgti~lwdl~~~~ 322 (849)
| .+ .+|+|+.|++|.||.....+
T Consensus 275 P~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R 315 (942)
T KOG0973|consen 275 PKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR 315 (942)
T ss_pred hHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC
Confidence 7 11 36789999999999987766
No 69
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=1.2e-18 Score=185.18 Aligned_cols=240 Identities=12% Similarity=0.118 Sum_probs=170.6
Q ss_pred ccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccc
Q 003087 10 TKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEI 88 (849)
Q Consensus 10 ~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~ 88 (849)
...|.-+.||||.++|.+++ +..+.+||+..+ .....+.......+.+.+|-|||..+++|+.|++|.-||++|+.+
T Consensus 269 ~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tg--d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~ 346 (519)
T KOG0293|consen 269 SQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTG--DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNIL 346 (519)
T ss_pred cCceEEEEECCCCCeEEecCchHheeeccCCcc--hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchh
Confidence 37899999999999998887 667899997643 222222211134678999999999999999999999999999986
Q ss_pred eecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEE
Q 003087 89 TRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDY 168 (849)
Q Consensus 89 ~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svaf 168 (849)
..+.+... ..|..|+..+|+.. +++.+.|..+++++..+.......+ ...+|.++..
T Consensus 347 ~~W~gvr~---~~v~dlait~Dgk~-------vl~v~~d~~i~l~~~e~~~dr~lis-------------e~~~its~~i 403 (519)
T KOG0293|consen 347 GNWEGVRD---PKVHDLAITYDGKY-------VLLVTVDKKIRLYNREARVDRGLIS-------------EEQPITSFSI 403 (519)
T ss_pred hccccccc---ceeEEEEEcCCCcE-------EEEEecccceeeechhhhhhhcccc-------------ccCceeEEEE
Confidence 66544221 35889998776642 5566899999999986533321111 1246999999
Q ss_pred cCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccc--cceEEE-ccCCCEEE
Q 003087 169 HPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLA--HPKVLI-SPQGKFVA 245 (849)
Q Consensus 169 sPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~--V~~vaf-SPDG~~LA 245 (849)
|.||++..+-=.+. .|.+||+....-. +++.| |..+ +-.=.| --|.+++|
T Consensus 404 S~d~k~~LvnL~~q-------------ei~LWDl~e~~lv------------~kY~G--hkq~~fiIrSCFgg~~~~fia 456 (519)
T KOG0293|consen 404 SKDGKLALVNLQDQ-------------EIHLWDLEENKLV------------RKYFG--HKQGHFIIRSCFGGGNDKFIA 456 (519)
T ss_pred cCCCcEEEEEcccC-------------eeEEeecchhhHH------------HHhhc--ccccceEEEeccCCCCcceEE
Confidence 99999877654443 3899999853111 11122 1111 111112 13678999
Q ss_pred EEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCC--EEEEEEeCCcEEEEEecC
Q 003087 246 TSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDN--ILILARKSSIITMIDVLS 320 (849)
Q Consensus 246 s~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~--~la~a~~dgti~lwdl~~ 320 (849)
|||.|+.|+||+..++.. +..++ +|...|..|+|.|-. .+|+|+.||||+||....
T Consensus 457 SGSED~kvyIWhr~sgkl-l~~Ls------------------GHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 457 SGSEDSKVYIWHRISGKL-LAVLS------------------GHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ecCCCceEEEEEccCCce-eEeec------------------CCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 999999999999998754 44433 455678899999965 489999999999998764
No 70
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.80 E-value=4.1e-18 Score=179.90 Aligned_cols=270 Identities=14% Similarity=0.119 Sum_probs=186.5
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEEC---CCCCEEEEEeCCCcEEEEecC-C
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWS---ESHDVLGIVDDTHTVYFFKAN-G 85 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafS---PDG~~LAs~~~dgtIrlWd~~-g 85 (849)
++|.+|..+ ++.|.+|+ ||.++||+..+ +...... ++.+.+.+++|- +-...+++|+.|.|++||..+ |
T Consensus 106 DWVSsv~~~--~~~IltgsYDg~~riWd~~G---k~~~~~~-Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 106 DWVSSVKGA--SKWILTGSYDGTSRIWDLKG---KSIKTIV-GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred hhhhhhccc--CceEEEeecCCeeEEEecCC---ceEEEEe-cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 778888888 78999998 78999999764 2222222 236778877773 333469999999999999986 4
Q ss_pred ccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCccccc-------------ccc-cCC
Q 003087 86 EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISS-------------ASA-SSS 151 (849)
Q Consensus 86 ~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~-------------~~~-~~~ 151 (849)
+..........++...|-+|...+++. .|.+++.|.+|.+|+...... ..++ +.. -..
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgt-------r~~SgS~D~~lkiWs~~~~~~-~~~E~~s~~rrk~~~~~~~~~~r~ 251 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGT-------RFCSGSWDTMLKIWSVETDEE-DELESSSNRRRKKQKREKEGGTRT 251 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCC-------eEEeecccceeeecccCCCcc-ccccccchhhhhhhhhhhcccccC
Confidence 321111111112335788888655443 466779999999999433221 1111 000 011
Q ss_pred c-ceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCcccc
Q 003087 152 G-LTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQL 230 (849)
Q Consensus 152 ~-~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~ 230 (849)
+ .++. +|...|.+|.|++ ...+.++|.|.| |+.||+..+.....+.. ..
T Consensus 252 P~vtl~-GHt~~Vs~V~w~d-~~v~yS~SwDHT-------------Ik~WDletg~~~~~~~~---------------~k 301 (423)
T KOG0313|consen 252 PLVTLE-GHTEPVSSVVWSD-ATVIYSVSWDHT-------------IKVWDLETGGLKSTLTT---------------NK 301 (423)
T ss_pred ceEEec-ccccceeeEEEcC-CCceEeecccce-------------EEEEEeecccceeeeec---------------Cc
Confidence 2 2455 5577899999999 556779999974 89999987633222211 24
Q ss_pred ccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCC--EEEEEE
Q 003087 231 AHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDN--ILILAR 308 (849)
Q Consensus 231 ~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~--~la~a~ 308 (849)
...+++.+|..++||+|+.|..++|||..++.-++-.+. |. +|.+.|.++.|+|-+ ++++++
T Consensus 302 sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s------------~~----gH~nwVssvkwsp~~~~~~~S~S 365 (423)
T KOG0313|consen 302 SLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQS------------LI----GHKNWVSSVKWSPTNEFQLVSGS 365 (423)
T ss_pred ceeEeecccccceeeecCCCCceeecCCCCCCCceeEEe------------ee----cchhhhhheecCCCCceEEEEEe
Confidence 678999999999999999999999999987643222222 11 467899999999976 588999
Q ss_pred eCCcEEEEEecCCcc-ccccCCCCCCeEEEEEec
Q 003087 309 KSSIITMIDVLSGLK-VKETDPKLRGHVFLLESK 341 (849)
Q Consensus 309 ~dgti~lwdl~~~~~-l~~~~~~~~g~~~~Le~~ 341 (849)
.||+++|||+.+-+- +| +-..|++++|.+.+-
T Consensus 366 ~D~t~klWDvRS~k~ply-dI~~h~DKvl~vdW~ 398 (423)
T KOG0313|consen 366 YDNTVKLWDVRSTKAPLY-DIAGHNDKVLSVDWN 398 (423)
T ss_pred cCCeEEEEEeccCCCcce-eeccCCceEEEEecc
Confidence 999999999998773 44 344678899987763
No 71
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.5e-17 Score=171.16 Aligned_cols=250 Identities=13% Similarity=0.148 Sum_probs=175.8
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeC--CCcEEEEecCCcc
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDD--THTVYFFKANGEE 87 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~--dgtIrlWd~~g~~ 87 (849)
++|.+|.||+||++|++++ |++++|++..++ ....+...+ .-.+..+.|-.....+..++. |.|||.-++..+.
T Consensus 15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~g--~~~~ti~sk-kyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNk 91 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLSG--KQVKTINSK-KYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNK 91 (311)
T ss_pred CceeEEEecCCCCEEEEecCCCeEEEEEcCCC--ceeeEeecc-cccccEEEEecCCceEEEccCCCCCceEEEEeecCc
Confidence 6899999999999999976 579999997653 222222221 345777888777777766666 8999999998655
Q ss_pred ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEE
Q 003087 88 ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTD 167 (849)
Q Consensus 88 ~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sva 167 (849)
..+.-++|. ..|.+|..+|... .|.+.+.|++||+||+....++-.+. ++ +-...|
T Consensus 92 ylRYF~GH~---~~V~sL~~sP~~d-------~FlS~S~D~tvrLWDlR~~~cqg~l~---------~~-----~~pi~A 147 (311)
T KOG1446|consen 92 YLRYFPGHK---KRVNSLSVSPKDD-------TFLSSSLDKTVRLWDLRVKKCQGLLN---------LS-----GRPIAA 147 (311)
T ss_pred eEEEcCCCC---ceEEEEEecCCCC-------eEEecccCCeEEeeEecCCCCceEEe---------cC-----CCccee
Confidence 445444443 5789999888433 37777999999999998766643321 11 235689
Q ss_pred EcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEE
Q 003087 168 YHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATS 247 (849)
Q Consensus 168 fsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~ 247 (849)
|.|+|-++|++.... .|+|+|+..- +..++.+. .-..+ -......|.|||||+.|...
T Consensus 148 fDp~GLifA~~~~~~-------------~IkLyD~Rs~-dkgPF~tf------~i~~~--~~~ew~~l~FS~dGK~iLls 205 (311)
T KOG1446|consen 148 FDPEGLIFALANGSE-------------LIKLYDLRSF-DKGPFTTF------SITDN--DEAEWTDLEFSPDGKSILLS 205 (311)
T ss_pred ECCCCcEEEEecCCC-------------eEEEEEeccc-CCCCceeE------ccCCC--CccceeeeEEcCCCCEEEEE
Confidence 999999988775443 3999998652 11122111 00111 23467799999999999999
Q ss_pred eCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecCCcccc
Q 003087 248 DTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVLSGLKVK 325 (849)
Q Consensus 248 s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~~~l~ 325 (849)
...+.+++-|...+.. +.++.... + ......+.+|+||++ +++++.||+|.||++.++.++.
T Consensus 206 T~~s~~~~lDAf~G~~-~~tfs~~~------------~---~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~ 268 (311)
T KOG1446|consen 206 TNASFIYLLDAFDGTV-KSTFSGYP------------N---AGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVA 268 (311)
T ss_pred eCCCcEEEEEccCCcE-eeeEeecc------------C---CCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEee
Confidence 9999999999998854 34443211 1 112236889999998 5567788999999999998654
No 72
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.4e-17 Score=172.21 Aligned_cols=274 Identities=12% Similarity=0.060 Sum_probs=169.5
Q ss_pred ccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeee-ec-CCCCEEEEEECCCCCEEEEEe-CCCcEEEEecC-
Q 003087 10 TKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFN-CT-GLGASIYGAWSESHDVLGIVD-DTHTVYFFKAN- 84 (849)
Q Consensus 10 ~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~-~~-~~~~v~~vafSPDG~~LAs~~-~dgtIrlWd~~- 84 (849)
-+.|..++||.||++||+++ |++|+||+.+|-..+. .++. .. .-+.-+.|+|+||.+-++.+- ...+++++...
T Consensus 86 ~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~e-Hr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K 164 (420)
T KOG2096|consen 86 KKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKE-HRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVK 164 (420)
T ss_pred CCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhh-hhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeee
Confidence 37899999999999999998 5799999987622211 1111 10 123447899999999877544 44578998763
Q ss_pred ---Cccceec---ccccc--cccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceec
Q 003087 85 ---GEEITRF---TNKHL--KVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLR 156 (849)
Q Consensus 85 ---g~~~~~l---~~~~~--~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~ 156 (849)
|..-.+. ..++. .+.-.|.++-...++ ..+.+++.|..|.+|++. |+.++.+. .
T Consensus 165 ~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~-------k~imsas~dt~i~lw~lk-Gq~L~~id------t---- 226 (420)
T KOG2096|consen 165 KTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNA-------KYIMSASLDTKICLWDLK-GQLLQSID------T---- 226 (420)
T ss_pred cccCCCCcccccccccccchhcccceEEEeecCCc-------eEEEEecCCCcEEEEecC-Cceeeeec------c----
Confidence 3221111 00010 111123332221211 246778999999999987 55443322 0
Q ss_pred cccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEE
Q 003087 157 RQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVL 236 (849)
Q Consensus 157 ~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~va 236 (849)
.+. .-...+.||+|+++|++|.-.. |++|.+--+.+++ .|...-....+| |+.+|..++
T Consensus 227 nq~--~n~~aavSP~GRFia~~gFTpD-------------VkVwE~~f~kdG~----fqev~rvf~LkG--H~saV~~~a 285 (420)
T KOG2096|consen 227 NQS--SNYDAAVSPDGRFIAVSGFTPD-------------VKVWEPIFTKDGT----FQEVKRVFSLKG--HQSAVLAAA 285 (420)
T ss_pred ccc--cccceeeCCCCcEEEEecCCCC-------------ceEEEEEeccCcc----hhhhhhhheecc--chhheeeee
Confidence 011 2356789999999999988653 6778764322211 111111123578 999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEecCCCcc------cccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeC
Q 003087 237 ISPQGKFVATSDTNGCLYIFEMDKDNF------SLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKS 310 (849)
Q Consensus 237 fSPDG~~LAs~s~Dgtv~LWd~~~~~~------~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~d 310 (849)
|||+++.++|+|-||+.+|||++-.=. .|+.++ -++. ...+....++-+|.|.+..++..
T Consensus 286 Fsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~----------~pl~----aag~~p~RL~lsP~g~~lA~s~g 351 (420)
T KOG2096|consen 286 FSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGS----------APLH----AAGSEPVRLELSPSGDSLAVSFG 351 (420)
T ss_pred eCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCC----------cchh----hcCCCceEEEeCCCCcEEEeecC
Confidence 999999999999999999999983200 011111 0111 11233457899999988777888
Q ss_pred CcEEEEEecCCccccccCCCCCCeEEE
Q 003087 311 SIITMIDVLSGLKVKETDPKLRGHVFL 337 (849)
Q Consensus 311 gti~lwdl~~~~~l~~~~~~~~g~~~~ 337 (849)
.+++++.-.+|+..-+-...|.+.|-.
T Consensus 352 s~l~~~~se~g~~~~~~e~~h~~~Is~ 378 (420)
T KOG2096|consen 352 SDLKVFASEDGKDYPELEDIHSTTISS 378 (420)
T ss_pred CceEEEEcccCccchhHHHhhcCceee
Confidence 899999999877443322344444433
No 73
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=5.1e-18 Score=188.02 Aligned_cols=233 Identities=12% Similarity=0.134 Sum_probs=174.4
Q ss_pred cceEEEEEcCCCCeEEEEeCC-eEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCc--c
Q 003087 11 KKQVSLFISPRGERVAVAAVN-QVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGE--E 87 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~--~ 87 (849)
-+|.+-.|=+.-+++++|||+ .|+|++.... .....|.. |.+-|++++-.|.--++.|+|+|.+|++||..++ +
T Consensus 56 ~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~--ekV~~FeA-H~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~ 132 (794)
T KOG0276|consen 56 VPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG--EKVKTFEA-HSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWAC 132 (794)
T ss_pred cchhhheeeeccceEEEecCCceEEEEecccc--eeeEEeec-cccceeeeeecCCCCeEEecCCccEEEEeeccCceee
Confidence 456677788889999999964 8999986532 23334443 3678899999999999999999999999999864 2
Q ss_pred ceecccccccccccEEEEEecC-CcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEE
Q 003087 88 ITRFTNKHLKVSLPIIGLIAQD-ETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT 166 (849)
Q Consensus 88 ~~~l~~~~~~~~~~V~~l~fs~-~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv 166 (849)
..++.+| ...|..|+|.| |.. .|++++-|+||++|.+..... -++|.|| ..+|+||
T Consensus 133 ~qtfeGH----~HyVMqv~fnPkD~n-------tFaS~sLDrTVKVWslgs~~~-----------nfTl~gH-ekGVN~V 189 (794)
T KOG0276|consen 133 EQTFEGH----EHYVMQVAFNPKDPN-------TFASASLDRTVKVWSLGSPHP-----------NFTLEGH-EKGVNCV 189 (794)
T ss_pred eeEEcCc----ceEEEEEEecCCCcc-------ceeeeeccccEEEEEcCCCCC-----------ceeeecc-ccCcceE
Confidence 2333332 35799999988 332 477889999999999875332 2567755 6689999
Q ss_pred EEcCCC--ceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEE
Q 003087 167 DYHPEL--SLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFV 244 (849)
Q Consensus 167 afsPdg--~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~L 244 (849)
.|-|-| ..|++|+.|. +|++||.++..+.+ ...| |...|..+.|.|-=-++
T Consensus 190 dyy~~gdkpylIsgaDD~-------------tiKvWDyQtk~CV~------------TLeG--Ht~Nvs~v~fhp~lpii 242 (794)
T KOG0276|consen 190 DYYTGGDKPYLISGADDL-------------TIKVWDYQTKSCVQ------------TLEG--HTNNVSFVFFHPELPII 242 (794)
T ss_pred EeccCCCcceEEecCCCc-------------eEEEeecchHHHHH------------Hhhc--ccccceEEEecCCCcEE
Confidence 999977 3677887775 48999998764322 2346 88999999999999999
Q ss_pred EEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEec-CCEEEEEEeCCcEEE
Q 003087 245 ATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWS-DNILILARKSSIITM 315 (849)
Q Consensus 245 As~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~-D~~la~a~~dgti~l 315 (849)
+|||.|||||||...+-+. -+++ + -....+++|+--. ++.+++|...|.|.+
T Consensus 243 isgsEDGTvriWhs~Ty~l-E~tL--------------n----~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 243 ISGSEDGTVRIWNSKTYKL-EKTL--------------N----YGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EEecCCccEEEecCcceeh-hhhh--------------h----cCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 9999999999998876422 1111 1 1245789998666 456888888887754
No 74
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=5.8e-18 Score=187.57 Aligned_cols=242 Identities=11% Similarity=0.148 Sum_probs=185.5
Q ss_pred cccceEEEEEcCCCCeEEEE-eCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cc
Q 003087 9 KTKKQVSLFISPRGERVAVA-AVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GE 86 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsa-s~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~ 86 (849)
|-.+|.+|.|.|.--++..+ -.|+|.||+-+. +.....+.-. .-+|++..|=+--+++++|++|+.|||++.+ ++
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyet--qtmVksfeV~-~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e 88 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYET--QTMVKSFEVS-EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE 88 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEeccc--ceeeeeeeec-ccchhhheeeeccceEEEecCCceEEEEecccce
Confidence 44899999999998877666 478999999764 3334444321 4578899999999999999999999999997 66
Q ss_pred cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCC-CcccccccccCCcceeccccCCceEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDP-SASISSASASSSGLTLRRQFPQNVIC 165 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~V~s 165 (849)
.+..+..| +..|++++..|..- .+.+.|.|-+|++||-..+= +. .+|. +|...|.+
T Consensus 89 kV~~FeAH----~DyIR~iavHPt~P-------~vLtsSDDm~iKlW~we~~wa~~-----------qtfe-GH~HyVMq 145 (794)
T KOG0276|consen 89 KVKTFEAH----SDYIRSIAVHPTLP-------YVLTSSDDMTIKLWDWENEWACE-----------QTFE-GHEHYVMQ 145 (794)
T ss_pred eeEEeecc----ccceeeeeecCCCC-------eEEecCCccEEEEeeccCceeee-----------eEEc-CcceEEEE
Confidence 66666443 36789999888321 25556899999999986431 22 2344 45678999
Q ss_pred EEEcC-CCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCC--C
Q 003087 166 TDYHP-ELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQG--K 242 (849)
Q Consensus 166 vafsP-dg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG--~ 242 (849)
|+|.| |-+.+||++-|+| |++|.+.++. +.+ .+.| |+.+|++|.|=|-| -
T Consensus 146 v~fnPkD~ntFaS~sLDrT-------------VKVWslgs~~---~nf---------Tl~g--HekGVN~Vdyy~~gdkp 198 (794)
T KOG0276|consen 146 VAFNPKDPNTFASASLDRT-------------VKVWSLGSPH---PNF---------TLEG--HEKGVNCVDYYTGGDKP 198 (794)
T ss_pred EEecCCCccceeeeecccc-------------EEEEEcCCCC---Cce---------eeec--cccCcceEEeccCCCcc
Confidence 99999 5678999999985 7889876542 111 2345 99999999998866 5
Q ss_pred EEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCC-EEEEEEeCCcEEEEEecCC
Q 003087 243 FVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDN-ILILARKSSIITMIDVLSG 321 (849)
Q Consensus 243 ~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~-~la~a~~dgti~lwdl~~~ 321 (849)
+|.||+.|.+|++||.++..| ++++. +|...|..+.|.|.= .+++|+.|||++||+-.|-
T Consensus 199 ylIsgaDD~tiKvWDyQtk~C-V~TLe------------------GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty 259 (794)
T KOG0276|consen 199 YLISGADDLTIKVWDYQTKSC-VQTLE------------------GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY 259 (794)
T ss_pred eEEecCCCceEEEeecchHHH-HHHhh------------------cccccceEEEecCCCcEEEEecCCccEEEecCcce
Confidence 899999999999999999877 55543 355678889998875 5778999999999998776
Q ss_pred c
Q 003087 322 L 322 (849)
Q Consensus 322 ~ 322 (849)
+
T Consensus 260 ~ 260 (794)
T KOG0276|consen 260 K 260 (794)
T ss_pred e
Confidence 4
No 75
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.79 E-value=3.4e-18 Score=178.91 Aligned_cols=199 Identities=13% Similarity=0.156 Sum_probs=156.3
Q ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEEecC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEE
Q 003087 54 LGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQ 132 (849)
Q Consensus 54 ~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~l 132 (849)
.+.|++|++-|-.+++|+|+.|+||+|||+. |+...++++|. ..|.+|+||+..- .+++++.|++|+.
T Consensus 151 lgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi----~~vr~vavS~rHp-------YlFs~gedk~VKC 219 (460)
T KOG0285|consen 151 LGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHI----ETVRGVAVSKRHP-------YLFSAGEDKQVKC 219 (460)
T ss_pred cceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchh----heeeeeeecccCc-------eEEEecCCCeeEE
Confidence 5678999999999999999999999999996 66666666543 5799999987432 3777899999999
Q ss_pred EEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccce
Q 003087 133 IEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLY 212 (849)
Q Consensus 133 w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~ 212 (849)
||+...+...-|. || -.+|.|++.||.-..|+++|.|. ++++||+..... +
T Consensus 220 wDLe~nkvIR~Yh-----------GH-lS~V~~L~lhPTldvl~t~grDs-------------t~RvWDiRtr~~---V- 270 (460)
T KOG0285|consen 220 WDLEYNKVIRHYH-----------GH-LSGVYCLDLHPTLDVLVTGGRDS-------------TIRVWDIRTRAS---V- 270 (460)
T ss_pred EechhhhhHHHhc-----------cc-cceeEEEeccccceeEEecCCcc-------------eEEEeeecccce---E-
Confidence 9998776544332 34 35799999999999999999995 589999987531 1
Q ss_pred eccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCC
Q 003087 213 TTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISD 292 (849)
Q Consensus 213 ~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (849)
....| |...|.+|.+-|-.-.++|+|.|++|+|||+..++- ..... .|...
T Consensus 271 --------~~l~G--H~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt-~~tlt------------------~hkks 321 (460)
T KOG0285|consen 271 --------HVLSG--HTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKT-MITLT------------------HHKKS 321 (460)
T ss_pred --------EEecC--CCCcceeEEeecCCCceEEecCCceEEEeeeccCce-eEeee------------------cccce
Confidence 12356 999999999999888899999999999999987743 22222 24456
Q ss_pred cEEEEEecCCE-EEEEEeCCcEEEEEecCCc
Q 003087 293 ITDFAWWSDNI-LILARKSSIITMIDVLSGL 322 (849)
Q Consensus 293 v~~vaws~D~~-la~a~~dgti~lwdl~~~~ 322 (849)
|..++-.|... .|+++. ..|+-|+++.|.
T Consensus 322 vral~lhP~e~~fASas~-dnik~w~~p~g~ 351 (460)
T KOG0285|consen 322 VRALCLHPKENLFASASP-DNIKQWKLPEGE 351 (460)
T ss_pred eeEEecCCchhhhhccCC-ccceeccCCccc
Confidence 88888888764 455554 468899999886
No 76
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=7.9e-18 Score=169.62 Aligned_cols=254 Identities=15% Similarity=0.111 Sum_probs=175.1
Q ss_pred CccccCcccccceEEEEEcCCC-CeEEEE--e------CCeEEEEecCCCCCcceeeeee-cCCCCEEEEEECCCC-CEE
Q 003087 1 MELYRQPRKTKKQVSLFISPRG-ERVAVA--A------VNQVTILQKDDDYQEPCGIFNC-TGLGASIYGAWSESH-DVL 69 (849)
Q Consensus 1 ~~~~~~~~~~~~v~slafSPdG-~~LAsa--s------~~~i~iw~~~~~~~~~~~~~~~-~~~~~v~~vafSPDG-~~L 69 (849)
|..|+.|.+-+ ++|.|||== .+||+| + .|++-|.+..+.. -++.+.. .-.+.+-.|+|||.. ..+
T Consensus 1 m~~~~tpgf~G--ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~--gi~e~~s~d~~D~LfdV~Wse~~e~~~ 76 (311)
T KOG0277|consen 1 MQTHTTPGFHG--YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPK--GIQECQSYDTEDGLFDVAWSENHENQV 76 (311)
T ss_pred CcceecCCccc--ceeEecccccchhheeehhhcccccCceEEEEecCCCC--CeEEEEeeecccceeEeeecCCCcceE
Confidence 56677787765 899999932 244433 2 3578888875432 2333331 125678899999976 456
Q ss_pred EEEeCCCcEEEEecC--CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCccccccc
Q 003087 70 GIVDDTHTVYFFKAN--GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSAS 147 (849)
Q Consensus 70 As~~~dgtIrlWd~~--g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~ 147 (849)
++++.||++||||.. .+.+..+..| ..-|.++.+++... .+|.+.|-||||++|+...+....
T Consensus 77 ~~a~GDGSLrl~d~~~~s~Pi~~~kEH----~~EV~Svdwn~~~r------~~~ltsSWD~TiKLW~~~r~~Sv~----- 141 (311)
T KOG0277|consen 77 IAASGDGSLRLFDLTMPSKPIHKFKEH----KREVYSVDWNTVRR------RIFLTSSWDGTIKLWDPNRPNSVQ----- 141 (311)
T ss_pred EEEecCceEEEeccCCCCcchhHHHhh----hhheEEeccccccc------eeEEeeccCCceEeecCCCCcceE-----
Confidence 688999999999964 3333333222 24577877765211 246666899999999987554432
Q ss_pred ccCCcceeccccCCceEEEEEcCC-CceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCC
Q 003087 148 ASSSGLTLRRQFPQNVICTDYHPE-LSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGH 226 (849)
Q Consensus 148 ~~~~~~~l~~~~~~~V~svafsPd-g~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~ 226 (849)
+|.| |..-|+.++|||. +.++|++|.|+ ++++||+.... ..+. + ..
T Consensus 142 ------Tf~g-h~~~Iy~a~~sp~~~nlfas~Sgd~-------------~l~lwdvr~~g--k~~~-------i---~a- 188 (311)
T KOG0277|consen 142 ------TFNG-HNSCIYQAAFSPHIPNLFASASGDG-------------TLRLWDVRSPG--KFMS-------I---EA- 188 (311)
T ss_pred ------eecC-CccEEEEEecCCCCCCeEEEccCCc-------------eEEEEEecCCC--ceeE-------E---Ee-
Confidence 3555 4567999999995 66889988886 48999987541 1110 1 11
Q ss_pred ccccccceEEEcc-CCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE--
Q 003087 227 EVQLAHPKVLISP-QGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-- 303 (849)
Q Consensus 227 ~h~~~V~~vafSP-DG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-- 303 (849)
|...|.++.||- |-..|||++.|+.|+.||+.+.+.. .. +|+ +|.--|..|.|||-.+
T Consensus 189 -h~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p-----l~---------eL~----gh~~AVRkvk~Sph~~~l 249 (311)
T KOG0277|consen 189 -HNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP-----LF---------ELN----GHGLAVRKVKFSPHHASL 249 (311)
T ss_pred -ccceeEeecccccCCcEEEecCCCceEEEEehhhcccc-----ce---------eec----CCceEEEEEecCcchhhH
Confidence 777888999984 7788999999999999999875321 11 121 3445689999999764
Q ss_pred EEEEEeCCcEEEEEecCCcccc
Q 003087 304 LILARKSSIITMIDVLSGLKVK 325 (849)
Q Consensus 304 la~a~~dgti~lwdl~~~~~l~ 325 (849)
||+++.|-|++|||...+.-+.
T Consensus 250 LaSasYDmT~riw~~~~~ds~~ 271 (311)
T KOG0277|consen 250 LASASYDMTVRIWDPERQDSAI 271 (311)
T ss_pred hhhccccceEEecccccchhhh
Confidence 7899999999999988665444
No 77
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=3.2e-18 Score=190.67 Aligned_cols=257 Identities=9% Similarity=0.074 Sum_probs=181.7
Q ss_pred cccccceE---EEEEc-CCCCeEEEEe-CCeEEEEecCCCCCcceeeee---ecCCCCEEEEEECCCCCEEEEEeCCCcE
Q 003087 7 PRKTKKQV---SLFIS-PRGERVAVAA-VNQVTILQKDDDYQEPCGIFN---CTGLGASIYGAWSESHDVLGIVDDTHTV 78 (849)
Q Consensus 7 ~~~~~~v~---slafS-PdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~---~~~~~~v~~vafSPDG~~LAs~~~dgtI 78 (849)
...+..|. ++-.+ |+|++|-+|+ |+.|++|+...+++.+...+. .+|.+.|..++.--+|+.|.|+|.|-||
T Consensus 18 ~qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTV 97 (735)
T KOG0308|consen 18 KQNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTV 97 (735)
T ss_pred hhccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceE
Confidence 34444444 55554 5667799987 789999987655443222221 1236677899999999999999999999
Q ss_pred EEEecC-Cc-cceecccccccccccEEEEEec-CCcccccccceeEEEEeCCCcEEEEEecCCCCcc--cccccccCCcc
Q 003087 79 YFFKAN-GE-EITRFTNKHLKVSLPIIGLIAQ-DETDVQRSCLCSFTVFTSDGFLHQIEISQDPSAS--ISSASASSSGL 153 (849)
Q Consensus 79 rlWd~~-g~-~~~~l~~~~~~~~~~V~~l~fs-~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~--~~~~~~~~~~~ 153 (849)
++|+.. +. -+....+.| ...|.+|++. ++.. .++++|-|+.|.+||+.++.... .+. .+ ..-
T Consensus 98 K~W~~~~~~~~c~stir~H---~DYVkcla~~ak~~~-------lvaSgGLD~~IflWDin~~~~~l~~s~n-~~--t~~ 164 (735)
T KOG0308|consen 98 KVWNAHKDNTFCMSTIRTH---KDYVKCLAYIAKNNE-------LVASGGLDRKIFLWDINTGTATLVASFN-NV--TVN 164 (735)
T ss_pred EEeecccCcchhHhhhhcc---cchheeeeecccCce-------eEEecCCCccEEEEEccCcchhhhhhcc-cc--ccc
Confidence 999986 32 223333333 3567788873 3332 35667999999999999875411 111 00 011
Q ss_pred eeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccc
Q 003087 154 TLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHP 233 (849)
Q Consensus 154 ~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~ 233 (849)
++..++..+|+++|-.|.|..+++||..+ .|++||...... + .+..| |++-|+
T Consensus 165 sl~sG~k~siYSLA~N~t~t~ivsGgtek-------------~lr~wDprt~~k---i---------mkLrG--HTdNVr 217 (735)
T KOG0308|consen 165 SLGSGPKDSIYSLAMNQTGTIIVSGGTEK-------------DLRLWDPRTCKK---I---------MKLRG--HTDNVR 217 (735)
T ss_pred cCCCCCccceeeeecCCcceEEEecCccc-------------ceEEeccccccc---e---------eeeec--cccceE
Confidence 23325567899999999999999988886 389999876531 1 12346 999999
Q ss_pred eEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecC-CEEEEEEeCCc
Q 003087 234 KVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSD-NILILARKSSI 312 (849)
Q Consensus 234 ~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D-~~la~a~~dgt 312 (849)
.+..++||+.+.|+|.||+|+|||+...+| +.++.. |..+|++..-+|+ ..+.+|++||.
T Consensus 218 ~ll~~dDGt~~ls~sSDgtIrlWdLgqQrC-l~T~~v------------------H~e~VWaL~~~~sf~~vYsG~rd~~ 278 (735)
T KOG0308|consen 218 VLLVNDDGTRLLSASSDGTIRLWDLGQQRC-LATYIV------------------HKEGVWALQSSPSFTHVYSGGRDGN 278 (735)
T ss_pred EEEEcCCCCeEeecCCCceEEeeeccccce-eeeEEe------------------ccCceEEEeeCCCcceEEecCCCCc
Confidence 999999999999999999999999987776 455432 3345777766555 35779999999
Q ss_pred EEEEEecCCc
Q 003087 313 ITMIDVLSGL 322 (849)
Q Consensus 313 i~lwdl~~~~ 322 (849)
|..=|+.+.+
T Consensus 279 i~~Tdl~n~~ 288 (735)
T KOG0308|consen 279 IYRTDLRNPA 288 (735)
T ss_pred EEecccCCch
Confidence 9999988754
No 78
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.77 E-value=5.5e-17 Score=164.17 Aligned_cols=237 Identities=15% Similarity=0.244 Sum_probs=163.6
Q ss_pred cccceEEEEEcCCC-CeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCc
Q 003087 9 KTKKQVSLFISPRG-ERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGE 86 (849)
Q Consensus 9 ~~~~v~slafSPdG-~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~ 86 (849)
+-+.|..+.++|.. .++|+++ |++|++||... ++++..... ...-..++|||||+++|.++.|..|.+.|....
T Consensus 63 h~~svdql~w~~~~~d~~atas~dk~ir~wd~r~--~k~~~~i~~--~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~ 138 (313)
T KOG1407|consen 63 HTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS--GKCTARIET--KGENINITWSPDGEYIAVGNKDDRITFIDARTY 138 (313)
T ss_pred CCcchhhheeCCCCCcceEEecCCceEEEEEecc--CcEEEEeec--cCcceEEEEcCCCCEEEEecCcccEEEEEeccc
Confidence 44678889998855 5888887 67999999764 233332222 233356899999999999999999999998643
Q ss_pred cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT 166 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv 166 (849)
.+..- .++..-+.-+.|+-+.. -|++-+..|+|.+.....-+.+ .+++ .|+....||
T Consensus 139 ~~~~~----~~~~~e~ne~~w~~~nd-------~Fflt~GlG~v~ILsypsLkpv-----------~si~-AH~snCicI 195 (313)
T KOG1407|consen 139 KIVNE----EQFKFEVNEISWNNSND-------LFFLTNGLGCVEILSYPSLKPV-----------QSIK-AHPSNCICI 195 (313)
T ss_pred ceeeh----hcccceeeeeeecCCCC-------EEEEecCCceEEEEeccccccc-----------cccc-cCCcceEEE
Confidence 32211 12234466667653221 2455567799998876532221 2344 346679999
Q ss_pred EEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEE
Q 003087 167 DYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVAT 246 (849)
Q Consensus 167 afsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs 246 (849)
.|+|+|+.+|+||.|. .++|||++.-. ++..|++ +.-+|+.++||-||++|||
T Consensus 196 ~f~p~GryfA~GsADA-------------lvSLWD~~ELi---------C~R~isR-----ldwpVRTlSFS~dg~~lAS 248 (313)
T KOG1407|consen 196 EFDPDGRYFATGSADA-------------LVSLWDVDELI---------CERCISR-----LDWPVRTLSFSHDGRMLAS 248 (313)
T ss_pred EECCCCceEeeccccc-------------eeeccChhHhh---------hheeecc-----ccCceEEEEeccCcceeec
Confidence 9999999999999996 38999987531 2233333 5669999999999999999
Q ss_pred EeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEe--C-------CcEEEE
Q 003087 247 SDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARK--S-------SIITMI 316 (849)
Q Consensus 247 ~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~--d-------gti~lw 316 (849)
||.|.-|-|=+++++.. ++..+ +.++...|+|.|-.- ||-|.. | |+|+++
T Consensus 249 aSEDh~IDIA~vetGd~-~~eI~-------------------~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiF 308 (313)
T KOG1407|consen 249 ASEDHFIDIAEVETGDR-VWEIP-------------------CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIF 308 (313)
T ss_pred cCccceEEeEecccCCe-EEEee-------------------ccCCceeEEecCCCceeeEEecCCCCccccccceeEEe
Confidence 99999999999998854 44433 335678899999764 443332 2 466666
Q ss_pred Eec
Q 003087 317 DVL 319 (849)
Q Consensus 317 dl~ 319 (849)
-++
T Consensus 309 G~~ 311 (313)
T KOG1407|consen 309 GLS 311 (313)
T ss_pred cCC
Confidence 544
No 79
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.77 E-value=2.3e-17 Score=178.12 Aligned_cols=262 Identities=14% Similarity=0.106 Sum_probs=183.6
Q ss_pred cccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCc----ce---ee--e---e-e--cCCCCEEEEEECCCCCEEE
Q 003087 7 PRKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQE----PC---GI--F---N-C--TGLGASIYGAWSESHDVLG 70 (849)
Q Consensus 7 ~~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~----~~---~~--~---~-~--~~~~~v~~vafSPDG~~LA 70 (849)
.+++..|.++++|||++++-+++ +++|.-|+...+... +. .+ . . . .+...+.++|.||||++||
T Consensus 139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyla 218 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLA 218 (479)
T ss_pred ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEE
Confidence 34567899999999999999998 688988987644211 11 00 0 0 1 1245678999999999999
Q ss_pred EEeCCCcEEEEecC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCccccccccc
Q 003087 71 IVDDTHTVYFFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASAS 149 (849)
Q Consensus 71 s~~~dgtIrlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~ 149 (849)
+|+.|..|+||+.. .+.+..+.+| ...|.+++|..+.. .+++++.|++|++|++..-. +.+
T Consensus 219 tgg~d~~v~Iw~~~t~ehv~~~~gh----r~~V~~L~fr~gt~-------~lys~s~Drsvkvw~~~~~s---~ve---- 280 (479)
T KOG0299|consen 219 TGGRDRHVQIWDCDTLEHVKVFKGH----RGAVSSLAFRKGTS-------ELYSASADRSVKVWSIDQLS---YVE---- 280 (479)
T ss_pred ecCCCceEEEecCcccchhhccccc----ccceeeeeeecCcc-------ceeeeecCCceEEEehhHhH---HHH----
Confidence 99999999999997 4444444333 36799999976432 47788999999999987422 222
Q ss_pred CCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccc
Q 003087 150 SSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQ 229 (849)
Q Consensus 150 ~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~ 229 (849)
+|-|| +..|.++.-..-++.+-+||.|.| +++|++... .+.++ .| |.
T Consensus 281 ----tlyGH-qd~v~~IdaL~reR~vtVGgrDrT-------------~rlwKi~ee--sqlif-----------rg--~~ 327 (479)
T KOG0299|consen 281 ----TLYGH-QDGVLGIDALSRERCVTVGGRDRT-------------VRLWKIPEE--SQLIF-----------RG--GE 327 (479)
T ss_pred ----HHhCC-ccceeeechhcccceEEeccccce-------------eEEEecccc--ceeee-----------eC--CC
Confidence 34444 567999999999998877778864 899999432 11221 23 56
Q ss_pred cccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCC-C-CCCCCCcEEEEEecCCE-EEE
Q 003087 230 LAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDG-R-TKPISDITDFAWWSDNI-LIL 306 (849)
Q Consensus 230 ~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~-~-~~~~~~v~~vaws~D~~-la~ 306 (849)
+.+-+++|= +...++|||.||+|.||++.+.+. +-... .-| .+.|+ + -++..+|.+++-.|..- +|+
T Consensus 328 ~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkp-lf~~~----~AH----gv~~~~~~~~~~~Witsla~i~~sdL~as 397 (479)
T KOG0299|consen 328 GSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKP-LFTSR----LAH----GVIPELDPVNGNFWITSLAVIPGSDLLAS 397 (479)
T ss_pred CCeeeEEEe-cccceeeccCCceEEEeeecccCc-eeEee----ccc----cccCCccccccccceeeeEecccCceEEe
Confidence 688899985 666788999999999999987643 32222 112 22222 0 11234788888888765 678
Q ss_pred EEeCCcEEEEEecCC---ccccccCC
Q 003087 307 ARKSSIITMIDVLSG---LKVKETDP 329 (849)
Q Consensus 307 a~~dgti~lwdl~~~---~~l~~~~~ 329 (849)
|+.+|.|++|-+..+ -+++..-|
T Consensus 398 GS~~G~vrLW~i~~g~r~i~~l~~ls 423 (479)
T KOG0299|consen 398 GSWSGCVRLWKIEDGLRAINLLYSLS 423 (479)
T ss_pred cCCCCceEEEEecCCccccceeeecc
Confidence 999999999999988 24554444
No 80
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.77 E-value=3e-18 Score=185.76 Aligned_cols=235 Identities=13% Similarity=0.058 Sum_probs=166.8
Q ss_pred CCCEEEEEECC-CCCEEEEEeCCCcEEEEecC--CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcE
Q 003087 54 LGASIYGAWSE-SHDVLGIVDDTHTVYFFKAN--GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFL 130 (849)
Q Consensus 54 ~~~v~~vafSP-DG~~LAs~~~dgtIrlWd~~--g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v 130 (849)
...|.++.|.| .|.+|+|++.|+.|+||++- ++++++..+| +.+|.++.|+.++. .|.++|+|+++
T Consensus 214 ~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH----~k~Vrd~~~s~~g~-------~fLS~sfD~~l 282 (503)
T KOG0282|consen 214 TKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGH----RKPVRDASFNNCGT-------SFLSASFDRFL 282 (503)
T ss_pred ccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcc----hhhhhhhhccccCC-------eeeeeecceee
Confidence 66899999999 99999999999999999984 6677776554 35788999987554 37778999999
Q ss_pred EEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCC-ceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcc
Q 003087 131 HQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPEL-SLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELE 209 (849)
Q Consensus 131 ~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg-~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~ 209 (849)
++||+.+|.+...+. ....++||.|+||+ +++++|+.|+ .|+.||+.++.
T Consensus 283 KlwDtETG~~~~~f~-------------~~~~~~cvkf~pd~~n~fl~G~sd~-------------ki~~wDiRs~k--- 333 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFH-------------LDKVPTCVKFHPDNQNIFLVGGSDK-------------KIRQWDIRSGK--- 333 (503)
T ss_pred eeeccccceEEEEEe-------------cCCCceeeecCCCCCcEEEEecCCC-------------cEEEEeccchH---
Confidence 999999998754322 12358999999999 6777888886 28999998752
Q ss_pred cceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCccccccccccccc------cccc-----
Q 003087 210 QLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERF------DLQV----- 278 (849)
Q Consensus 210 ~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~------~~~~----- 278 (849)
+. +.+.. |-+.|.++.|=|+|+..+|.+.|++++||+...+.. ++......+. .++.
T Consensus 334 -vv--------qeYd~--hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~-ik~i~~~~~hsmP~~~~~P~~~~~~ 401 (503)
T KOG0282|consen 334 -VV--------QEYDR--HLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP-IKNIADPEMHTMPCLTLHPNGKWFA 401 (503)
T ss_pred -HH--------HHHHh--hhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc-chhhcchhhccCcceecCCCCCeeh
Confidence 11 11222 667899999999999999999999999999886532 2211110000 0000
Q ss_pred ----------c-----cccCCC-C-CCC--CCCcEEEEEecCCE-EEEEEeCCcEEEEEecCCccccccCCCCCCeEEEE
Q 003087 279 ----------A-----DSLFDG-R-TKP--ISDITDFAWWSDNI-LILARKSSIITMIDVLSGLKVKETDPKLRGHVFLL 338 (849)
Q Consensus 279 ----------~-----~~l~~~-~-~~~--~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~~~l~~~~~~~~g~~~~L 338 (849)
+ ..++.. + .+| .+-.+.+.|||||. |++|..||.+.+||.++-+.+ .-.++|++.+..+
T Consensus 402 aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~-~~lkah~~~ci~v 480 (503)
T KOG0282|consen 402 AQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLV-SKLKAHDQPCIGV 480 (503)
T ss_pred hhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhh-hccccCCcceEEE
Confidence 0 000100 0 011 11245699999996 778999999999999987633 2345666666666
Q ss_pred Eec
Q 003087 339 ESK 341 (849)
Q Consensus 339 e~~ 341 (849)
++-
T Consensus 481 ~wH 483 (503)
T KOG0282|consen 481 DWH 483 (503)
T ss_pred Eec
Confidence 653
No 81
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=1.6e-17 Score=180.50 Aligned_cols=247 Identities=15% Similarity=0.171 Sum_probs=180.7
Q ss_pred cccccceEEEEEcCCC-CeEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCC
Q 003087 7 PRKTKKQVSLFISPRG-ERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANG 85 (849)
Q Consensus 7 ~~~~~~v~slafSPdG-~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g 85 (849)
++--+.|.+|+|||.- .-+|+++.-.+.|++...- .+..++. .=...+.++.|-.||++||.|+..|.|+|+|...
T Consensus 23 ~ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~--~~~k~~s-rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~ 99 (487)
T KOG0310|consen 23 HKEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTR--SVRKTFS-RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS 99 (487)
T ss_pred ccccCcceeEecCCCCCCceEEecccEEEEEecchh--hhhhhHH-hhccceeEEEeecCCeEEEccCCcCcEEEecccc
Confidence 4455899999999933 3478888888999975421 1111111 1145789999999999999999999999999666
Q ss_pred ccceecccccccccccEEEEEecC-CcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceE
Q 003087 86 EEITRFTNKHLKVSLPIIGLIAQD-ETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVI 164 (849)
Q Consensus 86 ~~~~~l~~~~~~~~~~V~~l~fs~-~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~ 164 (849)
+.+.+....| ..+|..+.|+| +.. .|.+++.|+.++.||++++.. ++ .++ +|+..|.
T Consensus 100 r~iLR~~~ah---~apv~~~~f~~~d~t-------~l~s~sDd~v~k~~d~s~a~v-~~----------~l~-~htDYVR 157 (487)
T KOG0310|consen 100 RVILRQLYAH---QAPVHVTKFSPQDNT-------MLVSGSDDKVVKYWDLSTAYV-QA----------ELS-GHTDYVR 157 (487)
T ss_pred HHHHHHHhhc---cCceeEEEecccCCe-------EEEecCCCceEEEEEcCCcEE-EE----------Eec-CCcceeE
Confidence 5433333333 36899999988 333 255568999999999997664 21 244 4567899
Q ss_pred EEEEcCCCc-eEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCE
Q 003087 165 CTDYHPELS-LLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKF 243 (849)
Q Consensus 165 svafsPdg~-lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~ 243 (849)
|.+|+|-.. ++++||.|++ |++||..... ..+.+.. |..+|-+|-|=|.|++
T Consensus 158 ~g~~~~~~~hivvtGsYDg~-------------vrl~DtR~~~--~~v~eln------------hg~pVe~vl~lpsgs~ 210 (487)
T KOG0310|consen 158 CGDISPANDHIVVTGSYDGK-------------VRLWDTRSLT--SRVVELN------------HGCPVESVLALPSGSL 210 (487)
T ss_pred eeccccCCCeEEEecCCCce-------------EEEEEeccCC--ceeEEec------------CCCceeeEEEcCCCCE
Confidence 999999755 7889999974 8999987643 2232221 6679999999999999
Q ss_pred EEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCC-EEEEEEeCCcEEEEEecCCc
Q 003087 244 VATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDN-ILILARKSSIITMIDVLSGL 322 (849)
Q Consensus 244 LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~-~la~a~~dgti~lwdl~~~~ 322 (849)
+||++. ..|++||+.+++..+..+ ..|.-.|.+..+..|+ +|++|+-||.|+++|+.+-+
T Consensus 211 iasAgG-n~vkVWDl~~G~qll~~~------------------~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~K 271 (487)
T KOG0310|consen 211 IASAGG-NSVKVWDLTTGGQLLTSM------------------FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYK 271 (487)
T ss_pred EEEcCC-CeEEEEEecCCceehhhh------------------hcccceEEEEEeecCCceEeecccccceEEEEccceE
Confidence 999874 579999999664322111 1255679999998887 59999999999999977666
Q ss_pred cc
Q 003087 323 KV 324 (849)
Q Consensus 323 ~l 324 (849)
.+
T Consensus 272 vv 273 (487)
T KOG0310|consen 272 VV 273 (487)
T ss_pred EE
Confidence 43
No 82
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.76 E-value=2e-17 Score=179.96 Aligned_cols=253 Identities=15% Similarity=0.237 Sum_probs=169.8
Q ss_pred cccccceEEEEEcCCCCeEEEEeC-CeEEEEecCCCCCcceeeee-----------ecC-CCCEEEEEECCCCC-EEEEE
Q 003087 7 PRKTKKQVSLFISPRGERVAVAAV-NQVTILQKDDDYQEPCGIFN-----------CTG-LGASIYGAWSESHD-VLGIV 72 (849)
Q Consensus 7 ~~~~~~v~slafSPdG~~LAsas~-~~i~iw~~~~~~~~~~~~~~-----------~~~-~~~v~~vafSPDG~-~LAs~ 72 (849)
|-.-..|++++|||.|.+|.++++ .+++|+|-+ + ..+..|. .+| ...+++..|.|+.+ ...++
T Consensus 211 P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRd-G--~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~ 287 (641)
T KOG0772|consen 211 PCETHQINSLQYSVTGDQILVVSGSAQAKLLDRD-G--FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTC 287 (641)
T ss_pred cccccccceeeecCCCCeEEEEecCcceeEEccC-C--ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEe
Confidence 666688999999999999988875 578898854 2 2333332 122 45679999999864 56689
Q ss_pred eCCCcEEEEecCCc--cceecccc-cccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCccccccccc
Q 003087 73 DDTHTVYFFKANGE--EITRFTNK-HLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASAS 149 (849)
Q Consensus 73 ~~dgtIrlWd~~g~--~~~~l~~~-~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~ 149 (849)
+.|||+|+||++.. ++..+... ....--++.+.+|++++...+ .+..||.|++|+...-.....+
T Consensus 288 s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iA-------agc~DGSIQ~W~~~~~~v~p~~----- 355 (641)
T KOG0772|consen 288 SYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIA-------AGCLDGSIQIWDKGSRTVRPVM----- 355 (641)
T ss_pred cCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhh-------hcccCCceeeeecCCcccccce-----
Confidence 99999999999732 22222111 112223577889998775433 3379999999996432211111
Q ss_pred CCcceecc-ccC-CceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCc
Q 003087 150 SSGLTLRR-QFP-QNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHE 227 (849)
Q Consensus 150 ~~~~~l~~-~~~-~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~ 227 (849)
..+. |.+ ..|+||+||+||+.|++=|.|++ +++||+.... +++.. ..|++..+
T Consensus 356 ----~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t-------------LKvWDLrq~k--kpL~~--~tgL~t~~---- 410 (641)
T KOG0772|consen 356 ----KVKDAHLPGQDITSISFSYDGNYLLSRGFDDT-------------LKVWDLRQFK--KPLNV--RTGLPTPF---- 410 (641)
T ss_pred ----EeeeccCCCCceeEEEeccccchhhhccCCCc-------------eeeeeccccc--cchhh--hcCCCccC----
Confidence 1111 322 26999999999999999999974 8999987642 12211 11333332
Q ss_pred cccccceEEEccCCCEEEEEeC------CCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecC
Q 003087 228 VQLAHPKVLISPQGKFVATSDT------NGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSD 301 (849)
Q Consensus 228 h~~~V~~vafSPDG~~LAs~s~------Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D 301 (849)
.-..+.||||.++|+||.. .|++..+|..+... +.+.. + ....|+.+.|.|-
T Consensus 411 ---~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~-v~ki~------------i------~~aSvv~~~Whpk 468 (641)
T KOG0772|consen 411 ---PGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDT-VYKID------------I------STASVVRCLWHPK 468 (641)
T ss_pred ---CCCccccCCCceEEEecccccCCCCCceEEEEeccceee-EEEec------------C------CCceEEEEeecch
Confidence 2347999999999999854 57888898876543 22221 1 1256899999995
Q ss_pred -CEEEEEEeCCcEEEEEecCC
Q 003087 302 -NILILARKSSIITMIDVLSG 321 (849)
Q Consensus 302 -~~la~a~~dgti~lwdl~~~ 321 (849)
++|.+++.||+++|+-=++.
T Consensus 469 LNQi~~gsgdG~~~vyYdp~~ 489 (641)
T KOG0772|consen 469 LNQIFAGSGDGTAHVYYDPNE 489 (641)
T ss_pred hhheeeecCCCceEEEECccc
Confidence 67889999999998765543
No 83
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.76 E-value=7.1e-18 Score=179.69 Aligned_cols=239 Identities=14% Similarity=0.131 Sum_probs=166.7
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCC-c
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANG-E 86 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g-~ 86 (849)
+.+.|.++.|.++|+.+.+++ |+..++|+.+. .....+++. |.+.|+++.|.-.....++|+.|.||++||+.. .
T Consensus 218 s~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~--~r~~~TLsG-HtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~ 294 (459)
T KOG0288|consen 218 SLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS--LRLRHTLSG-HTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY 294 (459)
T ss_pred cCCCcceeeecCCCceEEeecCCCceeeeeccc--hhhhhhhcc-cccceeeehhhccccceeeccccchhhhhhhhhhh
Confidence 457799999999999886665 78899999754 233344443 478899999998888899999999999999974 3
Q ss_pred cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT 166 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv 166 (849)
+..++.+. +.+..|..++ + .|++.-.|++||.||+..+....... .+ +.|.++
T Consensus 295 C~kt~l~~-----S~cnDI~~~~------~---~~~SgH~DkkvRfwD~Rs~~~~~sv~-----------~g--g~vtSl 347 (459)
T KOG0288|consen 295 CSKTVLPG-----SQCNDIVCSI------S---DVISGHFDKKVRFWDIRSADKTRSVP-----------LG--GRVTSL 347 (459)
T ss_pred eecccccc-----ccccceEecc------e---eeeecccccceEEEeccCCceeeEee-----------cC--cceeeE
Confidence 43333322 2333344321 1 24455689999999987665532211 12 259999
Q ss_pred EEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEE
Q 003087 167 DYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVAT 246 (849)
Q Consensus 167 afsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs 246 (849)
..+++|+.|.+.+.|+| +++-|..+..-.+++ ..+|+. -......+.|||||.++|+
T Consensus 348 ~ls~~g~~lLsssRDdt-------------l~viDlRt~eI~~~~---sA~g~k-------~asDwtrvvfSpd~~YvaA 404 (459)
T KOG0288|consen 348 DLSMDGLELLSSSRDDT-------------LKVIDLRTKEIRQTF---SAEGFK-------CASDWTRVVFSPDGSYVAA 404 (459)
T ss_pred eeccCCeEEeeecCCCc-------------eeeeecccccEEEEe---eccccc-------cccccceeEECCCCceeee
Confidence 99999999999899985 556555442100011 111221 1124789999999999999
Q ss_pred EeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEE
Q 003087 247 SDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMID 317 (849)
Q Consensus 247 ~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwd 317 (849)
||.||.|+||++.++++ -+..... ...+.|.+++|.|-|. +++++.++.+.+|.
T Consensus 405 GS~dgsv~iW~v~tgKl-E~~l~~s----------------~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 405 GSADGSVYIWSVFTGKL-EKVLSLS----------------TSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ccCCCcEEEEEccCceE-EEEeccC----------------CCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 99999999999999865 2232210 1223689999999775 77899999999993
No 84
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.76 E-value=7.5e-18 Score=173.47 Aligned_cols=215 Identities=11% Similarity=0.135 Sum_probs=155.1
Q ss_pred CCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCc----cceecc-c----c------cccccccEEEEEecCCccccccc
Q 003087 53 GLGASIYGAWSESHDVLGIVDDTHTVYFFKANGE----EITRFT-N----K------HLKVSLPIIGLIAQDETDVQRSC 117 (849)
Q Consensus 53 ~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~----~~~~l~-~----~------~~~~~~~V~~l~fs~~~~~~~s~ 117 (849)
|....++.+|||||.++|+|+.|-.|++.|+.-- ....+. + + ..++...|..|.|.|....
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I---- 186 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI---- 186 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe----
Confidence 4567789999999999999999999999998510 000000 0 0 1233457889999985443
Q ss_pred ceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCcee
Q 003087 118 LCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCI 197 (849)
Q Consensus 118 ~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I 197 (849)
+++++.|++|+++|++.......+. .|+. ...|.++.|||.|.+|++|.... ++
T Consensus 187 ---LiS~srD~tvKlFDfsK~saKrA~K--------~~qd--~~~vrsiSfHPsGefllvgTdHp-------------~~ 240 (430)
T KOG0640|consen 187 ---LISGSRDNTVKLFDFSKTSAKRAFK--------VFQD--TEPVRSISFHPSGEFLLVGTDHP-------------TL 240 (430)
T ss_pred ---EEeccCCCeEEEEecccHHHHHHHH--------Hhhc--cceeeeEeecCCCceEEEecCCC-------------ce
Confidence 4445899999999998643322221 2221 23699999999999998875554 48
Q ss_pred eEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccc
Q 003087 198 SLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQ 277 (849)
Q Consensus 198 ~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~ 277 (849)
+++|+++-.. +.+ ..+...|+++|..|.+|+.|++-+|+|.||.|+|||--+.+| +.++... |
T Consensus 241 rlYdv~T~Qc---fvs--------anPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rC-v~t~~~A----H- 303 (430)
T KOG0640|consen 241 RLYDVNTYQC---FVS--------ANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRC-VRTIGNA----H- 303 (430)
T ss_pred eEEeccceeE---eee--------cCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHH-HHHHHhh----c-
Confidence 9999987421 111 111112889999999999999999999999999999988877 5555411 0
Q ss_pred cccccCCCCCCCCCCcEEEEEecCCEEE-EEEeCCcEEEEEecCCcccc
Q 003087 278 VADSLFDGRTKPISDITDFAWWSDNILI-LARKSSIITMIDVLSGLKVK 325 (849)
Q Consensus 278 ~~~~l~~~~~~~~~~v~~vaws~D~~la-~a~~dgti~lwdl~~~~~l~ 325 (849)
....|++.-|.-+|+.+ +.+.|.++++|.+.+++-+.
T Consensus 304 -----------~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~ 341 (430)
T KOG0640|consen 304 -----------GGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLK 341 (430)
T ss_pred -----------CCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEE
Confidence 12468999999999854 56789999999999998553
No 85
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.76 E-value=2.8e-17 Score=177.62 Aligned_cols=262 Identities=17% Similarity=0.210 Sum_probs=168.7
Q ss_pred cceEEEEEcCCC-CeEEEEe-CCeEEEEecCCCCCcc--eeeee----ecC-CCCEEEEEECCC-CCEEEEEeCCCcEEE
Q 003087 11 KKQVSLFISPRG-ERVAVAA-VNQVTILQKDDDYQEP--CGIFN----CTG-LGASIYGAWSES-HDVLGIVDDTHTVYF 80 (849)
Q Consensus 11 ~~v~slafSPdG-~~LAsas-~~~i~iw~~~~~~~~~--~~~~~----~~~-~~~v~~vafSPD-G~~LAs~~~dgtIrl 80 (849)
+-|+.+..=|.. ..||+++ ++.|.|||.......+ .+.|. ..| ...=.+|+|++. --.|++|+.|++|.+
T Consensus 125 gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~l 204 (422)
T KOG0264|consen 125 GEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICL 204 (422)
T ss_pred ccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEE
Confidence 444555555544 4567665 5789999965432222 12111 112 222457999984 457889999999999
Q ss_pred EecCCccc--eecccc--cccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceec
Q 003087 81 FKANGEEI--TRFTNK--HLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLR 156 (849)
Q Consensus 81 Wd~~g~~~--~~l~~~--~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~ 156 (849)
||+++... ..+.+. ...+...|..|+|.+-... .|.+++.||.+.|||+.++.. ... .+-.
T Consensus 205 wdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~------lF~sv~dd~~L~iwD~R~~~~-~~~--------~~~~ 269 (422)
T KOG0264|consen 205 WDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED------LFGSVGDDGKLMIWDTRSNTS-KPS--------HSVK 269 (422)
T ss_pred EeccccccCCccccceEEeecCCcceehhhccccchh------hheeecCCCeEEEEEcCCCCC-CCc--------cccc
Confidence 99974321 111111 1123467888888772211 256679999999999986311 110 0112
Q ss_pred cccCCceEEEEEcCC-CceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceE
Q 003087 157 RQFPQNVICTDYHPE-LSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKV 235 (849)
Q Consensus 157 ~~~~~~V~svafsPd-g~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~v 235 (849)
.|+..|+|++|+|- +.+||+||.|+| |.|||+..-.. ++ ..+.+ |.+.|.+|
T Consensus 270 -ah~~~vn~~~fnp~~~~ilAT~S~D~t-------------V~LwDlRnL~~--~l---------h~~e~--H~dev~~V 322 (422)
T KOG0264|consen 270 -AHSAEVNCVAFNPFNEFILATGSADKT-------------VALWDLRNLNK--PL---------HTFEG--HEDEVFQV 322 (422)
T ss_pred -ccCCceeEEEeCCCCCceEEeccCCCc-------------EEEeechhccc--Cc---------eeccC--CCcceEEE
Confidence 45678999999995 557788888975 89999876311 11 12345 88999999
Q ss_pred EEccCC-CEEEEEeCCCcEEEEecCCCcccccccccccccccccccc-cCCCCCCCCCCcEEEEEecCC--EEEEEEeCC
Q 003087 236 LISPQG-KFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADS-LFDGRTKPISDITDFAWWSDN--ILILARKSS 311 (849)
Q Consensus 236 afSPDG-~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~-l~~~~~~~~~~v~~vaws~D~--~la~a~~dg 311 (849)
.|||+- ..|||++.||.+.+||+..-... +. +... . .++-+ |.- .++|...|.+++|.|.. .|++++.|+
T Consensus 323 ~WSPh~etvLASSg~D~rl~vWDls~ig~e-q~-~eda-~--dgppEllF~-HgGH~~kV~DfsWnp~ePW~I~SvaeDN 396 (422)
T KOG0264|consen 323 EWSPHNETVLASSGTDRRLNVWDLSRIGEE-QS-PEDA-E--DGPPELLFI-HGGHTAKVSDFSWNPNEPWTIASVAEDN 396 (422)
T ss_pred EeCCCCCceeEecccCCcEEEEeccccccc-cC-hhhh-c--cCCcceeEE-ecCcccccccccCCCCCCeEEEEecCCc
Confidence 999965 56999999999999999853221 11 0000 0 01101 100 25788899999999976 478899999
Q ss_pred cEEEEEecC
Q 003087 312 IITMIDVLS 320 (849)
Q Consensus 312 ti~lwdl~~ 320 (849)
.++||.+..
T Consensus 397 ~LqIW~~s~ 405 (422)
T KOG0264|consen 397 ILQIWQMAE 405 (422)
T ss_pred eEEEeeccc
Confidence 999999874
No 86
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.76 E-value=3.9e-17 Score=168.20 Aligned_cols=248 Identities=11% Similarity=0.118 Sum_probs=176.5
Q ss_pred ccccCcc-cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCC-CEEEEEeCCCcE
Q 003087 2 ELYRQPR-KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESH-DVLGIVDDTHTV 78 (849)
Q Consensus 2 ~~~~~~~-~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG-~~LAs~~~dgtI 78 (849)
|.|..+| +-+.|..|-|.+||..|.+++ |.++..||...+ +.+.++.. +..-|.++.=+-=| +++.||++|||+
T Consensus 81 eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG--~~~rk~k~-h~~~vNs~~p~rrg~~lv~SgsdD~t~ 157 (338)
T KOG0265|consen 81 ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETG--KRIRKHKG-HTSFVNSLDPSRRGPQLVCSGSDDGTL 157 (338)
T ss_pred cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccc--eeeehhcc-ccceeeecCccccCCeEEEecCCCceE
Confidence 4455544 568999999999999999998 679999998753 32333322 24455677744334 566699999999
Q ss_pred EEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccc
Q 003087 79 YFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQ 158 (849)
Q Consensus 79 rlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (849)
||||...+......... ..+.++.|.+.+. ++.+++-|+.|++||+..+.... .++ +
T Consensus 158 kl~D~R~k~~~~t~~~k----yqltAv~f~d~s~-------qv~sggIdn~ikvWd~r~~d~~~-----------~ls-G 214 (338)
T KOG0265|consen 158 KLWDIRKKEAIKTFENK----YQLTAVGFKDTSD-------QVISGGIDNDIKVWDLRKNDGLY-----------TLS-G 214 (338)
T ss_pred EEEeecccchhhccccc----eeEEEEEeccccc-------ceeeccccCceeeeccccCcceE-----------Eee-c
Confidence 99999865533332222 4588999977543 35556899999999997655432 244 4
Q ss_pred cCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCcc--ccccceEE
Q 003087 159 FPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEV--QLAHPKVL 236 (849)
Q Consensus 159 ~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h--~~~V~~va 236 (849)
|...|..+.-||+|..+.+-+-|. ++++|++..-...++.. ..+ .|..| ....-+++
T Consensus 215 h~DtIt~lsls~~gs~llsnsMd~-------------tvrvwd~rp~~p~~R~v-----~if---~g~~hnfeknlL~cs 273 (338)
T KOG0265|consen 215 HADTITGLSLSRYGSFLLSNSMDN-------------TVRVWDVRPFAPSQRCV-----KIF---QGHIHNFEKNLLKCS 273 (338)
T ss_pred ccCceeeEEeccCCCccccccccc-------------eEEEEEecccCCCCceE-----EEe---ecchhhhhhhcceee
Confidence 567899999999999998766664 58999987643223310 111 11111 12345789
Q ss_pred EccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEE
Q 003087 237 ISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITM 315 (849)
Q Consensus 237 fSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~l 315 (849)
|||+++.+..++.|..+.+||....+. +-+|+ +|.+.|..+.|.|... |.+++.|.+|.+
T Consensus 274 wsp~~~~i~ags~dr~vyvwd~~~r~~-lyklp------------------Gh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 274 WSPNGTKITAGSADRFVYVWDTTSRRI-LYKLP------------------GHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred ccCCCCccccccccceEEEeecccccE-EEEcC------------------CcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 999999999999999999999998765 55665 4667899999999875 568899998875
No 87
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.76 E-value=4.3e-17 Score=189.25 Aligned_cols=235 Identities=12% Similarity=0.151 Sum_probs=170.1
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceee-eeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Ccc
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGI-FNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEE 87 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~-~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~ 87 (849)
..+....|. +| .+++++ +++|.+|+....+ .+.. +. .|.+.|++++|..-+.+|.+|+.|.|+||||.. |++
T Consensus 209 ~~~~~~q~~-~~-~~~~~s~~~tl~~~~~~~~~--~i~~~l~-GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 209 HVVLCLQLH-DG-FFKSGSDDSTLHLWDLNNGY--LILTRLV-GHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC 283 (537)
T ss_pred chhhhheee-cC-eEEecCCCceeEEeecccce--EEEeecc-CCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE
Confidence 455666777 44 555665 6788999976532 2222 22 237889999999889999999999999999986 666
Q ss_pred ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEE
Q 003087 88 ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTD 167 (849)
Q Consensus 88 ~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sva 167 (849)
...+.+|. ..|..+..-+.. +.+++.|.+|++|++.++..+..+ . +|...|++|.
T Consensus 284 ~~~l~gh~----stv~~~~~~~~~---------~~sgs~D~tVkVW~v~n~~~l~l~-----------~-~h~~~V~~v~ 338 (537)
T KOG0274|consen 284 THSLQGHT----SSVRCLTIDPFL---------LVSGSRDNTVKVWDVTNGACLNLL-----------R-GHTGPVNCVQ 338 (537)
T ss_pred EEEecCCC----ceEEEEEccCce---------EeeccCCceEEEEeccCcceEEEe-----------c-cccccEEEEE
Confidence 55555443 456666543322 233468999999999987765442 3 3677899999
Q ss_pred EcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEE
Q 003087 168 YHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATS 247 (849)
Q Consensus 168 fsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~ 247 (849)
++ +.++++|+.|++ |++|++.... ++..+.| |...|+++.+.+. +.+.+|
T Consensus 339 ~~--~~~lvsgs~d~~-------------v~VW~~~~~~------------cl~sl~g--H~~~V~sl~~~~~-~~~~Sg 388 (537)
T KOG0274|consen 339 LD--EPLLVSGSYDGT-------------VKVWDPRTGK------------CLKSLSG--HTGRVYSLIVDSE-NRLLSG 388 (537)
T ss_pred ec--CCEEEEEecCce-------------EEEEEhhhce------------eeeeecC--CcceEEEEEecCc-ceEEee
Confidence 99 788889988863 8999987431 2223456 8999999988433 999999
Q ss_pred eCCCcEEEEecCCC-cccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecCCcccc
Q 003087 248 DTNGCLYIFEMDKD-NFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSGLKVK 325 (849)
Q Consensus 248 s~Dgtv~LWd~~~~-~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~~~~l~ 325 (849)
+.|++|++||+.+. +| +..+. .|..-|.++.+ .+..|++++.||+|++||..+++.+.
T Consensus 389 s~D~~IkvWdl~~~~~c-~~tl~------------------~h~~~v~~l~~-~~~~Lvs~~aD~~Ik~WD~~~~~~~~ 447 (537)
T KOG0274|consen 389 SLDTTIKVWDLRTKRKC-IHTLQ------------------GHTSLVSSLLL-RDNFLVSSSADGTIKLWDAEEGECLR 447 (537)
T ss_pred eeccceEeecCCchhhh-hhhhc------------------CCccccccccc-ccceeEeccccccEEEeecccCceee
Confidence 99999999999998 55 34443 23334444554 34568899999999999999988543
No 88
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.75 E-value=5.5e-17 Score=182.25 Aligned_cols=226 Identities=12% Similarity=0.106 Sum_probs=170.7
Q ss_pred EEEcC-CCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccceeccc
Q 003087 16 LFISP-RGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRFTN 93 (849)
Q Consensus 16 lafSP-dG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~l~~ 93 (849)
+.+-+ |+-+|.+|+ |.+|.+|.... ..|..++.. |...|++++--.++. |.|||.|.|+++|-. |+....+.+
T Consensus 64 i~y~e~~~~~l~~g~~D~~i~v~~~~~--~~P~~~Lkg-H~snVC~ls~~~~~~-~iSgSWD~TakvW~~-~~l~~~l~g 138 (745)
T KOG0301|consen 64 ICYAESDKGRLVVGGMDTTIIVFKLSQ--AEPLYTLKG-HKSNVCSLSIGEDGT-LISGSWDSTAKVWRI-GELVYSLQG 138 (745)
T ss_pred ceeccccCcceEeecccceEEEEecCC--CCchhhhhc-cccceeeeecCCcCc-eEecccccceEEecc-hhhhcccCC
Confidence 44543 444577777 67888987653 345555443 478999999888999 999999999999975 555555555
Q ss_pred ccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCc
Q 003087 94 KHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELS 173 (849)
Q Consensus 94 ~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~ 173 (849)
|+ .+|++|++-|.. .+.+++.|.+|++|+- ++..+ +|.| |..-|.++++-|++.
T Consensus 139 H~----asVWAv~~l~e~--------~~vTgsaDKtIklWk~--~~~l~-----------tf~g-HtD~VRgL~vl~~~~ 192 (745)
T KOG0301|consen 139 HT----ASVWAVASLPEN--------TYVTGSADKTIKLWKG--GTLLK-----------TFSG-HTDCVRGLAVLDDSH 192 (745)
T ss_pred cc----hheeeeeecCCC--------cEEeccCcceeeeccC--Cchhh-----------hhcc-chhheeeeEEecCCC
Confidence 44 679999986643 2566689999999974 33332 3555 566799999999987
Q ss_pred eEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcE
Q 003087 174 LLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCL 253 (849)
Q Consensus 174 lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv 253 (849)
+| |+|+|+ .|++|++++. .+....| |+.-|++++..++++.++|+|.|+++
T Consensus 193 fl-ScsNDg-------------~Ir~w~~~ge-------------~l~~~~g--htn~vYsis~~~~~~~Ivs~gEDrtl 243 (745)
T KOG0301|consen 193 FL-SCSNDG-------------SIRLWDLDGE-------------VLLEMHG--HTNFVYSISMALSDGLIVSTGEDRTL 243 (745)
T ss_pred eE-eecCCc-------------eEEEEeccCc-------------eeeeeec--cceEEEEEEecCCCCeEEEecCCceE
Confidence 65 889996 3999999663 1223346 99999999999999999999999999
Q ss_pred EEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecCCc
Q 003087 254 YIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSGL 322 (849)
Q Consensus 254 ~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~~~ 322 (849)
+||+... + .+.... | ...+|++..++.|.|++|+.||-|+||.....+
T Consensus 244 riW~~~e--~-~q~I~l------P------------ttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k~R 291 (745)
T KOG0301|consen 244 RIWKKDE--C-VQVITL------P------------TTSIWSAKVLLNGDIVVGGSDGRVRVFTVDKDR 291 (745)
T ss_pred EEeecCc--e-EEEEec------C------------ccceEEEEEeeCCCEEEeccCceEEEEEecccc
Confidence 9999882 2 333321 0 135899999999999999999999999987554
No 89
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.74 E-value=1e-16 Score=186.15 Aligned_cols=236 Identities=12% Similarity=0.144 Sum_probs=175.4
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cc
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GE 86 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~ 86 (849)
+-+.|++++|..-|.+|.+|| |.++++|+..++ .....+.. +.+.+.++.. ++-.+++|+.|.||+||+++ |.
T Consensus 248 H~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg--~C~~~l~g-h~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~ 322 (537)
T KOG0274|consen 248 HFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG--ECTHSLQG-HTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNGA 322 (537)
T ss_pred CCCCceeEEEecCCCEEEEEecCCcEEeEecCCC--cEEEEecC-CCceEEEEEc--cCceEeeccCCceEEEEeccCcc
Confidence 458899999998788999998 789999996643 22222221 2455565554 67788899999999999998 55
Q ss_pred cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT 166 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv 166 (849)
.+.++ ++| ..+|.+|....+ .++++++||+|++|++.++++... |+| |...|.++
T Consensus 323 ~l~l~-~~h---~~~V~~v~~~~~---------~lvsgs~d~~v~VW~~~~~~cl~s-----------l~g-H~~~V~sl 377 (537)
T KOG0274|consen 323 CLNLL-RGH---TGPVNCVQLDEP---------LLVSGSYDGTVKVWDPRTGKCLKS-----------LSG-HTGRVYSL 377 (537)
T ss_pred eEEEe-ccc---cccEEEEEecCC---------EEEEEecCceEEEEEhhhceeeee-----------ecC-CcceEEEE
Confidence 54444 433 367988887532 356668999999999998777543 555 56789999
Q ss_pred EEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEE
Q 003087 167 DYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVAT 246 (849)
Q Consensus 167 afsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs 246 (849)
.|.+. ..+++|+-|++ |++||+.+.. + .+..+.+ |+..|..+.+ .+++|.+
T Consensus 378 ~~~~~-~~~~Sgs~D~~-------------IkvWdl~~~~--------~---c~~tl~~--h~~~v~~l~~--~~~~Lvs 428 (537)
T KOG0274|consen 378 IVDSE-NRLLSGSLDTT-------------IKVWDLRTKR--------K---CIHTLQG--HTSLVSSLLL--RDNFLVS 428 (537)
T ss_pred EecCc-ceEEeeeeccc-------------eEeecCCchh--------h---hhhhhcC--Cccccccccc--ccceeEe
Confidence 99876 77889998863 8999998752 1 1112345 7778877776 9999999
Q ss_pred EeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecCCc
Q 003087 247 SDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSGL 322 (849)
Q Consensus 247 ~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~~~ 322 (849)
++.||+|++||...+++ ++.... .+...|..+++. +..++.++.+|++++||+++++
T Consensus 429 ~~aD~~Ik~WD~~~~~~-~~~~~~-----------------~~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 429 SSADGTIKLWDAEEGEC-LRTLEG-----------------RHVGGVSALALG-KEEILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred ccccccEEEeecccCce-eeeecc-----------------CCcccEEEeecC-cceEEEEecCCeeEEEecccCc
Confidence 99999999999998876 444331 123557777764 5568889999999999999987
No 90
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.74 E-value=1.7e-17 Score=176.77 Aligned_cols=263 Identities=9% Similarity=0.046 Sum_probs=185.7
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecC-CCCEEEEEECCCCCEEEEEeCCCcEEEEecC-C
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTG-LGASIYGAWSESHDVLGIVDDTHTVYFFKAN-G 85 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~-~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g 85 (849)
+++.|.++-|=++..+||+|+ |..|++|+.........+.+. | .+.|+++.|-++|+.+.+++.|+++++|+++ +
T Consensus 174 h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLa--Gs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~ 251 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLA--GSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL 251 (459)
T ss_pred cccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhh--ccCCCcceeeecCCCceEEeecCCCceeeeeccch
Confidence 558899999999999999997 678999997654222233322 3 5789999999999999999999999999997 6
Q ss_pred ccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEE
Q 003087 86 EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVIC 165 (849)
Q Consensus 86 ~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~s 165 (849)
....++.+|. ..|.++-|.-... .++++++|.+|++||+..+.+.... |. ...++.
T Consensus 252 r~~~TLsGHt----dkVt~ak~~~~~~-------~vVsgs~DRtiK~WDl~k~~C~kt~----------l~---~S~cnD 307 (459)
T KOG0288|consen 252 RLRHTLSGHT----DKVTAAKFKLSHS-------RVVSGSADRTIKLWDLQKAYCSKTV----------LP---GSQCND 307 (459)
T ss_pred hhhhhhcccc----cceeeehhhcccc-------ceeeccccchhhhhhhhhhheeccc----------cc---cccccc
Confidence 6677777654 4577777754222 1445589999999999876654321 11 123667
Q ss_pred EEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEE
Q 003087 166 TDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVA 245 (849)
Q Consensus 166 vafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LA 245 (849)
|..+ +..++||..|+ .|++||..+.... . ..+. .+.|.+|..|++|..|.
T Consensus 308 I~~~--~~~~~SgH~Dk-------------kvRfwD~Rs~~~~---~--------sv~~----gg~vtSl~ls~~g~~lL 357 (459)
T KOG0288|consen 308 IVCS--ISDVISGHFDK-------------KVRFWDIRSADKT---R--------SVPL----GGRVTSLDLSMDGLELL 357 (459)
T ss_pred eEec--ceeeeeccccc-------------ceEEEeccCCcee---e--------Eeec----CcceeeEeeccCCeEEe
Confidence 7776 45566777776 3899997764211 1 1111 24899999999999999
Q ss_pred EEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecCCccc
Q 003087 246 TSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVLSGLKV 324 (849)
Q Consensus 246 s~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~~~l 324 (849)
+.+.|.++++.|+.+... ...+...+ .........+.||||+. +|.|+.||.|.||++.+++..
T Consensus 358 sssRDdtl~viDlRt~eI-~~~~sA~g--------------~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE 422 (459)
T KOG0288|consen 358 SSSRDDTLKVIDLRTKEI-RQTFSAEG--------------FKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLE 422 (459)
T ss_pred eecCCCceeeeecccccE-EEEeeccc--------------cccccccceeEECCCCceeeeccCCCcEEEEEccCceEE
Confidence 999999999999998643 23333211 11223467799999997 567899999999999999843
Q ss_pred ccc-CCCCCCeEEEEEecc
Q 003087 325 KET-DPKLRGHVFLLESKS 342 (849)
Q Consensus 325 ~~~-~~~~~g~~~~Le~~~ 342 (849)
.-- .+..+-.|+.+++.+
T Consensus 423 ~~l~~s~s~~aI~s~~W~~ 441 (459)
T KOG0288|consen 423 KVLSLSTSNAAITSLSWNP 441 (459)
T ss_pred EEeccCCCCcceEEEEEcC
Confidence 211 111122678888754
No 91
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=3.9e-17 Score=187.89 Aligned_cols=218 Identities=15% Similarity=0.160 Sum_probs=151.2
Q ss_pred CCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccceecccc-------------------------c-----ccccccE
Q 003087 53 GLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRFTNK-------------------------H-----LKVSLPI 102 (849)
Q Consensus 53 ~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~l~~~-------------------------~-----~~~~~~V 102 (849)
+.+.|+++.|||||++||+|+.||.||||.+...+....... . .......
T Consensus 266 h~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s 345 (712)
T KOG0283|consen 266 HKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQS 345 (712)
T ss_pred cCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCC
Confidence 468899999999999999999999999999866111110000 0 0000001
Q ss_pred EEE-------EecCC------------cccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCce
Q 003087 103 IGL-------IAQDE------------TDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNV 163 (849)
Q Consensus 103 ~~l-------~fs~~------------~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V 163 (849)
.++ .|++. -+++||-.+.|.+.+-|.|||||++....++..+ .|++.|
T Consensus 346 ~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F-------------~HndfV 412 (712)
T KOG0283|consen 346 PCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF-------------SHNDFV 412 (712)
T ss_pred ccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEE-------------ecCCee
Confidence 111 22221 1456887778888999999999999987776554 357789
Q ss_pred EEEEEcC-CCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCC
Q 003087 164 ICTDYHP-ELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGK 242 (849)
Q Consensus 164 ~svafsP-dg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~ 242 (849)
+||+|+| |-+++++|+-|+ .||||.+... .+.... . -.+-|.+|.|+|||+
T Consensus 413 TcVaFnPvDDryFiSGSLD~-------------KvRiWsI~d~----~Vv~W~---------D--l~~lITAvcy~PdGk 464 (712)
T KOG0283|consen 413 TCVAFNPVDDRYFISGSLDG-------------KVRLWSISDK----KVVDWN---------D--LRDLITAVCYSPDGK 464 (712)
T ss_pred EEEEecccCCCcEeeccccc-------------ceEEeecCcC----eeEeeh---------h--hhhhheeEEeccCCc
Confidence 9999999 788999999886 3888887653 111100 0 125788999999999
Q ss_pred EEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCC--EEEEEEeCCcEEEEEecC
Q 003087 243 FVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDN--ILILARKSSIITMIDVLS 320 (849)
Q Consensus 243 ~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~--~la~a~~dgti~lwdl~~ 320 (849)
..+.|..+|..+++++.+.+. ...+... +.+.++.....|..+-|.|.. .+++++.|..|||+|+.+
T Consensus 465 ~avIGt~~G~C~fY~t~~lk~-~~~~~I~----------~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~ 533 (712)
T KOG0283|consen 465 GAVIGTFNGYCRFYDTEGLKL-VSDFHIR----------LHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD 533 (712)
T ss_pred eEEEEEeccEEEEEEccCCeE-EEeeeEe----------eccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccc
Confidence 999999999999999998754 2222111 122222211268888888754 589999999999999955
Q ss_pred Cc
Q 003087 321 GL 322 (849)
Q Consensus 321 ~~ 322 (849)
..
T Consensus 534 ~~ 535 (712)
T KOG0283|consen 534 KD 535 (712)
T ss_pred hh
Confidence 43
No 92
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.73 E-value=1.8e-16 Score=179.16 Aligned_cols=248 Identities=13% Similarity=0.112 Sum_probs=184.7
Q ss_pred cceEEEEEcCCCCeEEEEeC-CeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-----
Q 003087 11 KKQVSLFISPRGERVAVAAV-NQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN----- 84 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~----- 84 (849)
+.+.+..|=|.++++.+|.. |.+.+.+.... ..+.+.. .|.+.+++++.+|||+..++||.|.||++||..
T Consensus 413 ~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~--~l~Eti~-AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~ 489 (888)
T KOG0306|consen 413 GYILASKFVPGDRYIVLGTKNGELQVFDLASA--SLVETIR-AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSV 489 (888)
T ss_pred ccEEEEEecCCCceEEEeccCCceEEEEeehh--hhhhhhh-ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEecc
Confidence 45778889999999999984 78889986532 2222222 246789999999999999999999999999852
Q ss_pred -Cccceeccccc---ccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccC
Q 003087 85 -GEEITRFTNKH---LKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFP 160 (849)
Q Consensus 85 -g~~~~~l~~~~---~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (849)
|.....+.-+| .+....|.++.+|||+... ++.=-|.|+++|-+.+-+. + .+|= +|+
T Consensus 490 ~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~L-------aVsLLdnTVkVyflDtlKF---f--------lsLY-GHk 550 (888)
T KOG0306|consen 490 PGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLL-------AVSLLDNTVKVYFLDTLKF---F--------LSLY-GHK 550 (888)
T ss_pred CcccceeeeeccceEEeccccEEEEEEcCCCcEE-------EEEeccCeEEEEEecceee---e--------eeec-ccc
Confidence 33212122222 3445678999999987643 3445799999999876443 1 1333 346
Q ss_pred CceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccC
Q 003087 161 QNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQ 240 (849)
Q Consensus 161 ~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPD 240 (849)
-+|.|+..|||++++++||.|++ |++|-++-+.+-..+ -+ |++.|.+|.|=|+
T Consensus 551 LPV~smDIS~DSklivTgSADKn-------------VKiWGLdFGDCHKS~------------fA--HdDSvm~V~F~P~ 603 (888)
T KOG0306|consen 551 LPVLSMDISPDSKLIVTGSADKN-------------VKIWGLDFGDCHKSF------------FA--HDDSVMSVQFLPK 603 (888)
T ss_pred cceeEEeccCCcCeEEeccCCCc-------------eEEeccccchhhhhh------------hc--ccCceeEEEEccc
Confidence 68999999999999999999985 788866554321111 13 9999999999999
Q ss_pred CCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEec
Q 003087 241 GKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVL 319 (849)
Q Consensus 241 G~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~ 319 (849)
..+..|+|-||.|+-||-.+..+ ++++. +|...|+..+-+|+|. +++++.|.+|++|.-.
T Consensus 604 ~~~FFt~gKD~kvKqWDg~kFe~-iq~L~------------------~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 604 THLFFTCGKDGKVKQWDGEKFEE-IQKLD------------------GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred ceeEEEecCcceEEeechhhhhh-heeec------------------cchheeeeeEEcCCCCeEEeccCCceeEeeecc
Confidence 99999999999999999987654 34433 3557799999899885 6788999999999976
Q ss_pred CCccccc
Q 003087 320 SGLKVKE 326 (849)
Q Consensus 320 ~~~~l~~ 326 (849)
.-..++|
T Consensus 665 de~~~lE 671 (888)
T KOG0306|consen 665 DEILILE 671 (888)
T ss_pred Ccceeee
Confidence 5444443
No 93
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=7.4e-17 Score=161.90 Aligned_cols=224 Identities=14% Similarity=0.155 Sum_probs=158.1
Q ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEEecC--C--ccceecccccccccccEEEEEe-cCCcccccccceeEEEEeCCC
Q 003087 54 LGASIYGAWSESHDVLGIVDDTHTVYFFKAN--G--EEITRFTNKHLKVSLPIIGLIA-QDETDVQRSCLCSFTVFTSDG 128 (849)
Q Consensus 54 ~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~--g--~~~~~l~~~~~~~~~~V~~l~f-s~~~~~~~s~~~~~~~~s~Dg 128 (849)
.+.|..+..---|+.||++++|++|||+.+. | +.+.++.+| +.+|+.++| .|. +.+.++++++||
T Consensus 11 ~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh----~GPVwqv~wahPk------~G~iLAScsYDg 80 (299)
T KOG1332|consen 11 EDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGH----SGPVWKVAWAHPK------FGTILASCSYDG 80 (299)
T ss_pred hhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCC----CCCeeEEeecccc------cCcEeeEeecCc
Confidence 3455555555569999999999999999985 3 345566554 478999999 452 112366779999
Q ss_pred cEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCC--CceEEEEecCCCCccccCCCCCCceeeEEEecCC-
Q 003087 129 FLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPE--LSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHN- 205 (849)
Q Consensus 129 ~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPd--g~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~- 205 (849)
.|.+|.-..|.....++ .. .|...|++|+|-|. |-+||.|++|++ |++.+.++.
T Consensus 81 kVIiWke~~g~w~k~~e---------~~-~h~~SVNsV~wapheygl~LacasSDG~-------------vsvl~~~~~g 137 (299)
T KOG1332|consen 81 KVIIWKEENGRWTKAYE---------HA-AHSASVNSVAWAPHEYGLLLACASSDGK-------------VSVLTYDSSG 137 (299)
T ss_pred eEEEEecCCCchhhhhh---------hh-hhcccceeecccccccceEEEEeeCCCc-------------EEEEEEcCCC
Confidence 99999987765443333 22 34567999999886 568999999974 677766553
Q ss_pred -cCcccceeccccceeeccCCCccccccceEEEccC---C-----------CEEEEEeCCCcEEEEecCCCccccccccc
Q 003087 206 -LELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQ---G-----------KFVATSDTNGCLYIFEMDKDNFSLSKFAC 270 (849)
Q Consensus 206 -~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPD---G-----------~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~ 270 (849)
.+-..|. .. |.-+|.+|+|.|- | +.||||+.|..|+||+.+.++ |..
T Consensus 138 ~w~t~ki~-----------~a--H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~-----w~~ 199 (299)
T KOG1332|consen 138 GWTTSKIV-----------FA--HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS-----WKL 199 (299)
T ss_pred Cccchhhh-----------hc--cccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc-----hhh
Confidence 1111121 12 8889999999997 7 779999999999999999762 221
Q ss_pred ccccccccccccCCCCCCCCCCcEEEEEecCC-----EEEEEEeCCcEEEEEecCCc-----cccccCC--------CCC
Q 003087 271 GERFDLQVADSLFDGRTKPISDITDFAWWSDN-----ILILARKSSIITMIDVLSGL-----KVKETDP--------KLR 332 (849)
Q Consensus 271 ~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~-----~la~a~~dgti~lwdl~~~~-----~l~~~~~--------~~~ 332 (849)
... | .+|.+.|.+|||.|.. .||+++.||++-||....-. .++++-| ...
T Consensus 200 e~~--------l----~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~s 267 (299)
T KOG1332|consen 200 ERT--------L----EGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLS 267 (299)
T ss_pred hhh--------h----hhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEecc
Confidence 110 0 1577889999999953 58999999999999986321 3444433 346
Q ss_pred CeEEEEEe
Q 003087 333 GHVFLLES 340 (849)
Q Consensus 333 g~~~~Le~ 340 (849)
|.++++.+
T Consensus 268 Gn~LaVs~ 275 (299)
T KOG1332|consen 268 GNILAVSG 275 (299)
T ss_pred ccEEEEec
Confidence 66666554
No 94
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=1.9e-16 Score=158.06 Aligned_cols=201 Identities=13% Similarity=0.187 Sum_probs=155.3
Q ss_pred CCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEE
Q 003087 53 GLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLH 131 (849)
Q Consensus 53 ~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~ 131 (849)
+++.|+.+.|.-||++-.+++.|.|||||+.. |..+.+..+|- .-|..++.+-|.. .|++++.|..+.
T Consensus 16 ~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG----~EVlD~~~s~Dns-------kf~s~GgDk~v~ 84 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHG----HEVLDAALSSDNS-------KFASCGGDKAVQ 84 (307)
T ss_pred cccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCC----ceeeecccccccc-------ccccCCCCceEE
Confidence 36789999999999999999999999999986 88887776543 3466666533322 466779999999
Q ss_pred EEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccc
Q 003087 132 QIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQL 211 (849)
Q Consensus 132 lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l 211 (849)
+||+.+|+.... |+|| ...|++|+|..+...+++||.|. .+++||-.+.. .+++
T Consensus 85 vwDV~TGkv~Rr-----------~rgH-~aqVNtV~fNeesSVv~SgsfD~-------------s~r~wDCRS~s-~ePi 138 (307)
T KOG0316|consen 85 VWDVNTGKVDRR-----------FRGH-LAQVNTVRFNEESSVVASGSFDS-------------SVRLWDCRSRS-FEPI 138 (307)
T ss_pred EEEcccCeeeee-----------cccc-cceeeEEEecCcceEEEeccccc-------------eeEEEEcccCC-CCcc
Confidence 999999987543 4444 45699999999999999999996 48999987642 2332
Q ss_pred eeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCC
Q 003087 212 YTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPIS 291 (849)
Q Consensus 212 ~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (849)
. .+.. ..++|.+|.+ .+..+++||.||++|.+|+..++.. .. ....
T Consensus 139 Q------ilde-----a~D~V~Si~v--~~heIvaGS~DGtvRtydiR~G~l~-sD--------------------y~g~ 184 (307)
T KOG0316|consen 139 Q------ILDE-----AKDGVSSIDV--AEHEIVAGSVDGTVRTYDIRKGTLS-SD--------------------YFGH 184 (307)
T ss_pred c------hhhh-----hcCceeEEEe--cccEEEeeccCCcEEEEEeecceee-hh--------------------hcCC
Confidence 1 1111 3468888888 6888999999999999999877441 11 1235
Q ss_pred CcEEEEEecCCE-EEEEEeCCcEEEEEecCCccc
Q 003087 292 DITDFAWWSDNI-LILARKSSIITMIDVLSGLKV 324 (849)
Q Consensus 292 ~v~~vaws~D~~-la~a~~dgti~lwdl~~~~~l 324 (849)
+|.+|.|++|+. ..+++-|++|++.|-.+|+.+
T Consensus 185 pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL 218 (307)
T KOG0316|consen 185 PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLL 218 (307)
T ss_pred cceeEEecCCCCEEEEeeccceeeecccchhHHH
Confidence 789999999987 456778999999999999854
No 95
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.73 E-value=1e-15 Score=164.95 Aligned_cols=245 Identities=12% Similarity=0.128 Sum_probs=152.3
Q ss_pred cceEEEEEcCCCCeEE-EEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEE-eCCCcEEEEecCC-c
Q 003087 11 KKQVSLFISPRGERVA-VAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIV-DDTHTVYFFKANG-E 86 (849)
Q Consensus 11 ~~v~slafSPdG~~LA-sas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~-~~dgtIrlWd~~g-~ 86 (849)
..+..++|+|||+.++ +++ ++.|.+|+..++ .....+. ....+..++|+|||+.|+++ +.|++|++||+.+ +
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~--~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~ 106 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATG--EVIGTLP--SGPDPELFALHPNGKILYIANEDDNLVTVIDIETRK 106 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCCC--cEEEecc--CCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCe
Confidence 3467899999999874 444 579999997642 2222222 12345679999999988654 5689999999974 3
Q ss_pred cceecccccccccccEEEEEecCCcccccccceeEEEEeCCC-cEEEEEecCCCCcccccccccCCcceeccccCCceEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDG-FLHQIEISQDPSASISSASASSSGLTLRRQFPQNVIC 165 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg-~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~s 165 (849)
.+..+..+ ..+.+++|+|++.. +++.+.++ .++.|+..++..... +. ....+.+
T Consensus 107 ~~~~~~~~-----~~~~~~~~~~dg~~-------l~~~~~~~~~~~~~d~~~~~~~~~-----------~~--~~~~~~~ 161 (300)
T TIGR03866 107 VLAEIPVG-----VEPEGMAVSPDGKI-------VVNTSETTNMAHFIDTKTYEIVDN-----------VL--VDQRPRF 161 (300)
T ss_pred EEeEeeCC-----CCcceEEECCCCCE-------EEEEecCCCeEEEEeCCCCeEEEE-----------EE--cCCCccE
Confidence 33333211 23567888886643 33334443 567778765433211 11 1123578
Q ss_pred EEEcCCCceEEEEec-CCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEE
Q 003087 166 TDYHPELSLLSVVSN-TDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFV 244 (849)
Q Consensus 166 vafsPdg~lLas~g~-d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~L 244 (849)
++|+|||+.|++++. ++ .|++|++.+......+. ....+ ...+ ......++|||||+++
T Consensus 162 ~~~s~dg~~l~~~~~~~~-------------~v~i~d~~~~~~~~~~~-~~~~~---~~~~---~~~~~~i~~s~dg~~~ 221 (300)
T TIGR03866 162 AEFTADGKELWVSSEIGG-------------TVSVIDVATRKVIKKIT-FEIPG---VHPE---AVQPVGIKLTKDGKTA 221 (300)
T ss_pred EEECCCCCEEEEEcCCCC-------------EEEEEEcCcceeeeeee-ecccc---cccc---cCCccceEECCCCCEE
Confidence 999999998866543 43 38999987652111110 00000 0000 0123468999999986
Q ss_pred EE-EeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEE-EeCCcEEEEEecCC
Q 003087 245 AT-SDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILA-RKSSIITMIDVLSG 321 (849)
Q Consensus 245 As-~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a-~~dgti~lwdl~~~ 321 (849)
+. .+.+++|.+||+.+.+. +.... +...+.+++|+|||. |+++ +.+|+|+|||+.++
T Consensus 222 ~~~~~~~~~i~v~d~~~~~~-~~~~~-------------------~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 222 FVALGPANRVAVVDAKTYEV-LDYLL-------------------VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL 281 (300)
T ss_pred EEEcCCCCeEEEEECCCCcE-EEEEE-------------------eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 54 45677899999986533 11111 113477899999986 5554 46899999999998
Q ss_pred ccc
Q 003087 322 LKV 324 (849)
Q Consensus 322 ~~l 324 (849)
+.+
T Consensus 282 ~~~ 284 (300)
T TIGR03866 282 KVI 284 (300)
T ss_pred cEE
Confidence 743
No 96
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=1.3e-15 Score=157.51 Aligned_cols=273 Identities=14% Similarity=0.143 Sum_probs=172.7
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcc--eeeeeecCCCCEEEEEECC--CCCEEEEEeCCCcEEEEecC-
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEP--CGIFNCTGLGASIYGAWSE--SHDVLGIVDDTHTVYFFKAN- 84 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~--~~~~~~~~~~~v~~vafSP--DG~~LAs~~~dgtIrlWd~~- 84 (849)
+-|..|.|.+-|+++|++| |++|+||+..++.+.= ...+.. |.+.|..|+|-+ =|+.+|+++.|+||+||.-.
T Consensus 14 DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wra-h~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~ 92 (361)
T KOG2445|consen 14 DLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRA-HDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQE 92 (361)
T ss_pred ceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEe-cCCcEEEEEecCccccceEEEEecCCceeeeeecc
Confidence 5689999999999999997 7899999954432211 111112 367899999965 59999999999999999752
Q ss_pred ------Ccc---ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCccccc-----ccccC
Q 003087 85 ------GEE---ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISS-----ASASS 150 (849)
Q Consensus 85 ------g~~---~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~-----~~~~~ 150 (849)
|.. +.++ .+..+.|..|.|.|..... .++.++.||++|+|+.-....++... +..+.
T Consensus 93 ~~~~~~~~~Wv~~ttl----~DsrssV~DV~FaP~hlGL-----klA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~ 163 (361)
T KOG2445|consen 93 KSEEAHGRRWVRRTTL----VDSRSSVTDVKFAPKHLGL-----KLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID 163 (361)
T ss_pred cccccccceeEEEEEe----ecCCcceeEEEecchhcce-----EEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence 111 1111 1223679999999854321 36778999999999975432221111 00000
Q ss_pred CcceeccccCCceEEEEEcCC---CceEEEEecCCCCccccCCCCCCceeeEEEecCCc-CcccceeccccceeeccCCC
Q 003087 151 SGLTLRRQFPQNVICTDYHPE---LSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNL-ELEQLYTTQIEGLYCEPKGH 226 (849)
Q Consensus 151 ~~~~l~~~~~~~V~svafsPd---g~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~-~~~~l~~~~~~~~~~~~~g~ 226 (849)
+ .|.+.....||.|+|. -.+||+|+.++. ...+ .+.+|..+... ....+. ...+
T Consensus 164 ---p-p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a------~~~~--~~~Iye~~e~~rKw~kva---------~L~d- 221 (361)
T KOG2445|consen 164 ---P-PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDA------PHLN--KVKIYEYNENGRKWLKVA---------ELPD- 221 (361)
T ss_pred ---C-cccccCcceEEeeccccccCceEEEEcccCC------cccc--ceEEEEecCCcceeeeeh---------hcCC-
Confidence 1 1233456899999974 346777765520 1112 26788776542 111111 2335
Q ss_pred ccccccceEEEccCC----CEEEEEeCCCcEEEEecCCCcccccccccc-----cccccccccccCCCCCCCCCCcEEEE
Q 003087 227 EVQLAHPKVLISPQG----KFVATSDTNGCLYIFEMDKDNFSLSKFACG-----ERFDLQVADSLFDGRTKPISDITDFA 297 (849)
Q Consensus 227 ~h~~~V~~vafSPDG----~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~-----~~~~~~~~~~l~~~~~~~~~~v~~va 297 (849)
|.++|+.++|+|.- .+||++..|| |+||.+...+..+ .... .-.+.++. +-.+-.+|...|+.+.
T Consensus 222 -~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i--~~ee~~~~~~~~~l~v~--~vs~~~~H~~~VWrv~ 295 (361)
T KOG2445|consen 222 -HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAI--EEEEVLAPDLMTDLPVE--KVSELDDHNGEVWRVR 295 (361)
T ss_pred -CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchh--hhhcccCCCCccccceE--EeeeccCCCCceEEEE
Confidence 89999999999964 5799999999 9999998542111 0000 00000000 0001135777899999
Q ss_pred EecCCE-EEEEEeCCcEEEEEecCC
Q 003087 298 WWSDNI-LILARKSSIITMIDVLSG 321 (849)
Q Consensus 298 ws~D~~-la~a~~dgti~lwdl~~~ 321 (849)
|.--|. |++++.||.|++|...-.
T Consensus 296 wNmtGtiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 296 WNMTGTILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred EeeeeeEEeecCCCceeeehhhhhh
Confidence 987775 667899999999986543
No 97
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.72 E-value=6.3e-17 Score=162.58 Aligned_cols=195 Identities=13% Similarity=0.181 Sum_probs=143.8
Q ss_pred eEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Ccccee
Q 003087 13 QVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEITR 90 (849)
Q Consensus 13 v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~~~ 90 (849)
|.+++||.|.++|.+|+ +.-++|++.......| ..+ ..+.+.|+.+-|--.-+.+.|+.+|+|||+||.. |.+..+
T Consensus 103 vk~~af~~ds~~lltgg~ekllrvfdln~p~App-~E~-~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~s 180 (334)
T KOG0278|consen 103 VKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP-KEI-SGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQS 180 (334)
T ss_pred eeeEEecccchhhhccchHHHhhhhhccCCCCCc-hhh-cCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEE
Confidence 89999999999999998 4667888765322222 112 2236789999998877788888999999999986 766555
Q ss_pred cccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcC
Q 003087 91 FTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHP 170 (849)
Q Consensus 91 l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsP 170 (849)
+. ++.+|.++-.++++ ++.++.+-+.|..||...-+...-+. -+..|.+...||
T Consensus 181 L~-----~~s~VtSlEvs~dG--------~ilTia~gssV~Fwdaksf~~lKs~k-------------~P~nV~SASL~P 234 (334)
T KOG0278|consen 181 LE-----FNSPVTSLEVSQDG--------RILTIAYGSSVKFWDAKSFGLLKSYK-------------MPCNVESASLHP 234 (334)
T ss_pred Ee-----cCCCCcceeeccCC--------CEEEEecCceeEEeccccccceeecc-------------CccccccccccC
Confidence 43 23567777776644 35566788899999987533322111 234599999999
Q ss_pred CCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCC
Q 003087 171 ELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTN 250 (849)
Q Consensus 171 dg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~D 250 (849)
+...++.||.|. .+..+|.+++.+... + .+| |.++|.+|.|||||..-|+||.|
T Consensus 235 ~k~~fVaGged~-------------~~~kfDy~TgeEi~~---------~--nkg--h~gpVhcVrFSPdGE~yAsGSED 288 (334)
T KOG0278|consen 235 KKEFFVAGGEDF-------------KVYKFDYNTGEEIGS---------Y--NKG--HFGPVHCVRFSPDGELYASGSED 288 (334)
T ss_pred CCceEEecCcce-------------EEEEEeccCCceeee---------c--ccC--CCCceEEEEECCCCceeeccCCC
Confidence 998888777774 367778777643221 1 256 88999999999999999999999
Q ss_pred CcEEEEecCCC
Q 003087 251 GCLYIFEMDKD 261 (849)
Q Consensus 251 gtv~LWd~~~~ 261 (849)
|+|+||.+...
T Consensus 289 GTirlWQt~~~ 299 (334)
T KOG0278|consen 289 GTIRLWQTTPG 299 (334)
T ss_pred ceEEEEEecCC
Confidence 99999998755
No 98
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.72 E-value=8.9e-16 Score=161.77 Aligned_cols=252 Identities=11% Similarity=0.077 Sum_probs=169.9
Q ss_pred cccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCC
Q 003087 7 PRKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANG 85 (849)
Q Consensus 7 ~~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g 85 (849)
+.+-+.|.++.||.||.+||+|. ++.|.||....+. ....+- .....+..+.|.|-+.+|+.|+.||.|..|.+..
T Consensus 103 tgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~--~~~~~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~ 179 (399)
T KOG0296|consen 103 TGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGG--EQWKLD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPS 179 (399)
T ss_pred cCCCCceEEEEEccCceEEEecCCCccEEEEEcccCc--eEEEee-cccCceEEEEecccccEEEeecCCCcEEEEECCC
Confidence 45668899999999999999997 7899999876431 111121 1246788999999999999999999999999974
Q ss_pred -ccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceE
Q 003087 86 -EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVI 164 (849)
Q Consensus 86 -~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~ 164 (849)
..+..+.+| +.++..=-|.|++. .++++..||+|++||..++....... +.-...-.
T Consensus 180 ~~~~kv~~Gh----~~~ct~G~f~pdGK-------r~~tgy~dgti~~Wn~ktg~p~~~~~-----------~~e~~~~~ 237 (399)
T KOG0296|consen 180 QALCKVMSGH----NSPCTCGEFIPDGK-------RILTGYDDGTIIVWNPKTGQPLHKIT-----------QAEGLELP 237 (399)
T ss_pred cceeeEecCC----CCCcccccccCCCc-------eEEEEecCceEEEEecCCCceeEEec-----------ccccCcCC
Confidence 555555543 35676667777654 35556789999999999875422211 00001234
Q ss_pred EEEEcCCCceEEEEecCCCCccccCCCCCC-----------------------------------------ceeeEEEec
Q 003087 165 CTDYHPELSLLSVVSNTDTSSLTSSGNSGP-----------------------------------------CCISLWRRC 203 (849)
Q Consensus 165 svafsPdg~lLas~g~d~t~~~~~~~~~G~-----------------------------------------~~I~lW~~~ 203 (849)
++.++.+|.++..++.++.+.+-. ..+|. .+|.|||..
T Consensus 238 ~~~~~~~~~~~~~g~~e~~~~~~~-~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a 316 (399)
T KOG0296|consen 238 CISLNLAGSTLTKGNSEGVACGVN-NGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLA 316 (399)
T ss_pred ccccccccceeEeccCCccEEEEc-cccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecc
Confidence 444555554444443332111100 11110 024455544
Q ss_pred CCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccC
Q 003087 204 HNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLF 283 (849)
Q Consensus 204 ~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~ 283 (849)
... ++..-. |+.+|.++.|-+ ..+|+++..||+|++||..++++ ++...
T Consensus 317 ~~~-------------~R~~c~--he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l---~~~y~------------ 365 (399)
T KOG0296|consen 317 AST-------------LRHICE--HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQL---KFTYT------------ 365 (399)
T ss_pred cch-------------hheecc--CCCceEEEEEcC-cchheeeccCceEEeeeccccce---EEEEe------------
Confidence 321 011111 888999999988 78999999999999999999865 33321
Q ss_pred CCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEec
Q 003087 284 DGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVL 319 (849)
Q Consensus 284 ~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~ 319 (849)
+|...|.+++.+||.+ +++++.|++.+|+.++
T Consensus 366 ----GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 366 ----GHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ----cCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 4678899999999986 5678999999999875
No 99
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.71 E-value=7.2e-16 Score=158.99 Aligned_cols=269 Identities=14% Similarity=0.161 Sum_probs=182.1
Q ss_pred cceEEEEEcCCCC-eEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccc
Q 003087 11 KKQVSLFISPRGE-RVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEI 88 (849)
Q Consensus 11 ~~v~slafSPdG~-~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~ 88 (849)
+.|.+|+|||..+ ++|.+| |++|++|...+. +...++-...+.+.|.+++||-||..+++|+.|+.+++||+...+.
T Consensus 28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~-g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~ 106 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNS-GQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV 106 (347)
T ss_pred cchheeEeccccCceEEecccCCceEEEEEecC-CcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe
Confidence 6789999999554 454555 899999997653 3444443333477899999999999999999999999999986666
Q ss_pred eecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEE
Q 003087 89 TRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDY 168 (849)
Q Consensus 89 ~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svaf 168 (849)
..+-.| ..+|..+.|-+.... . -++++|-|.+|+.||.........+ ..+..|++.+.
T Consensus 107 ~~v~~H----d~pvkt~~wv~~~~~--~---cl~TGSWDKTlKfWD~R~~~pv~t~-------------~LPeRvYa~Dv 164 (347)
T KOG0647|consen 107 SQVAAH----DAPVKTCHWVPGMNY--Q---CLVTGSWDKTLKFWDTRSSNPVATL-------------QLPERVYAADV 164 (347)
T ss_pred eeeeec----ccceeEEEEecCCCc--c---eeEecccccceeecccCCCCeeeee-------------eccceeeehhc
Confidence 666443 357888888553321 1 2566789999999998743322111 23555766655
Q ss_pred cCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCc-CcccceeccccceeeccCCCccccccceEEEccCCCEEEEE
Q 003087 169 HPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNL-ELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATS 247 (849)
Q Consensus 169 sPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~-~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~ 247 (849)
- ..+++++-.++ .|.++.+.+++ ....+.+ ..+ -.+++|+.-+|.+.-|-|
T Consensus 165 ~--~pm~vVata~r-------------~i~vynL~n~~te~k~~~S--------pLk-----~Q~R~va~f~d~~~~alG 216 (347)
T KOG0647|consen 165 L--YPMAVVATAER-------------HIAVYNLENPPTEFKRIES--------PLK-----WQTRCVACFQDKDGFALG 216 (347)
T ss_pred c--CceeEEEecCC-------------cEEEEEcCCCcchhhhhcC--------ccc-----ceeeEEEEEecCCceEee
Confidence 3 34666665554 37888886542 1111111 111 257899999999999999
Q ss_pred eCCCcEEEEecCCCccccc--ccccccccccccccccCCCCCCCCCCcEEEEEecC-CEEEEEEeCCcEEEEEecCCccc
Q 003087 248 DTNGCLYIFEMDKDNFSLS--KFACGERFDLQVADSLFDGRTKPISDITDFAWWSD-NILILARKSSIITMIDVLSGLKV 324 (849)
Q Consensus 248 s~Dgtv~LWd~~~~~~~l~--~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D-~~la~a~~dgti~lwdl~~~~~l 324 (849)
+.+|.+-|-.++.+.. .. .|.+|.+... + . +....|-+|+|.|- |.+++++.||+...||-...++|
T Consensus 217 siEGrv~iq~id~~~~-~~nFtFkCHR~~~~-~----~----~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kL 286 (347)
T KOG0647|consen 217 SIEGRVAIQYIDDPNP-KDNFTFKCHRSTNS-V----N----DDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKL 286 (347)
T ss_pred eecceEEEEecCCCCc-cCceeEEEeccCCC-C----C----CceEEecceEeecccceEEEecCCceEEEecchhhhhh
Confidence 9999999999986421 22 3444432221 0 0 11235778999995 57899999999999998877766
Q ss_pred cc--c--CC------CCCCeEEEEEe
Q 003087 325 KE--T--DP------KLRGHVFLLES 340 (849)
Q Consensus 325 ~~--~--~~------~~~g~~~~Le~ 340 (849)
++ . .| -++|.||+-.-
T Consensus 287 k~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 287 KTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred hccCcCCCccceeEecCCCCEEEEEe
Confidence 63 2 22 35888887443
No 100
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.70 E-value=8.7e-16 Score=165.98 Aligned_cols=234 Identities=16% Similarity=0.217 Sum_probs=157.9
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCc-
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGE- 86 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~- 86 (849)
+.+-+.++|.||||+|||+|+ |..|.||+.++ ..++..+. .+.+.|.+++|--.-..|-|++.|++|++|+++..
T Consensus 201 h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t--~ehv~~~~-ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s 277 (479)
T KOG0299|consen 201 HVKEILTLAVSSDGKYLATGGRDRHVQIWDCDT--LEHVKVFK-GHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS 277 (479)
T ss_pred ccceeEEEEEcCCCcEEEecCCCceEEEecCcc--cchhhccc-ccccceeeeeeecCccceeeeecCCceEEEehhHhH
Confidence 447789999999999999997 67889999764 23343333 23788999999999999999999999999999743
Q ss_pred cceecccccccccccEEEEEecCCcccccccceeE-EEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSF-TVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVIC 165 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~-~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~s 165 (849)
.+.++.+|+ +.|.+|.-.. -..+ .+.+.|+++++|++.... +- .|.++ ...+-|
T Consensus 278 ~vetlyGHq----d~v~~IdaL~--------reR~vtVGgrDrT~rlwKi~ees-ql-----------ifrg~-~~sidc 332 (479)
T KOG0299|consen 278 YVETLYGHQ----DGVLGIDALS--------RERCVTVGGRDRTVRLWKIPEES-QL-----------IFRGG-EGSIDC 332 (479)
T ss_pred HHHHHhCCc----cceeeechhc--------ccceEEeccccceeEEEeccccc-ee-----------eeeCC-CCCeee
Confidence 345555655 3455554221 1123 334599999999994322 21 23333 456999
Q ss_pred EEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccc-cceeeccCCCccccccceEEEccCCCEE
Q 003087 166 TDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQI-EGLYCEPKGHEVQLAHPKVLISPQGKFV 244 (849)
Q Consensus 166 vafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~-~~~~~~~~g~~h~~~V~~vafSPDG~~L 244 (849)
++|=.+-.+ ++||.++ .|.||.+.... ++++.+. -|....+.+..+..+|.+|+..|...++
T Consensus 333 v~~In~~Hf-vsGSdnG-------------~IaLWs~~KKk---plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~ 395 (479)
T KOG0299|consen 333 VAFINDEHF-VSGSDNG-------------SIALWSLLKKK---PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLL 395 (479)
T ss_pred EEEecccce-eeccCCc-------------eEEEeeecccC---ceeEeeccccccCCccccccccceeeeEecccCceE
Confidence 999876654 5777775 38999987642 2221111 0111111110022499999999999999
Q ss_pred EEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE
Q 003087 245 ATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI 303 (849)
Q Consensus 245 As~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~ 303 (849)
|||+.+|.|+||.+..+-. .+.... +++ ..+-|.+++|+++|.
T Consensus 396 asGS~~G~vrLW~i~~g~r---~i~~l~--------~ls-----~~GfVNsl~f~~sgk 438 (479)
T KOG0299|consen 396 ASGSWSGCVRLWKIEDGLR---AINLLY--------SLS-----LVGFVNSLAFSNSGK 438 (479)
T ss_pred EecCCCCceEEEEecCCcc---ccceee--------ecc-----cccEEEEEEEccCCC
Confidence 9999999999999987722 222110 111 234588999999987
No 101
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.70 E-value=3e-15 Score=161.35 Aligned_cols=236 Identities=10% Similarity=0.050 Sum_probs=148.5
Q ss_pred CCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEE-EEEeCCCcEEEEecC-Cccceecccccccc
Q 003087 22 GERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVL-GIVDDTHTVYFFKAN-GEEITRFTNKHLKV 98 (849)
Q Consensus 22 G~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~L-As~~~dgtIrlWd~~-g~~~~~l~~~~~~~ 98 (849)
++.+++++ ++.+.+|+..++ .....+. ++..+..++|+|||+.| ++++.+++|++||.. |+.+..+..+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~--~~~~~~~--~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~---- 72 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATL--EVTRTFP--VGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG---- 72 (300)
T ss_pred CcEEEEecCCCEEEEEECCCC--ceEEEEE--CCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC----
Confidence 35677776 689999997643 3334443 23446789999999987 677889999999987 4443334322
Q ss_pred cccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEE
Q 003087 99 SLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVV 178 (849)
Q Consensus 99 ~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~ 178 (849)
..+..++|+|++... +++.+.|+.+++||+.++..... +..+ ..+.+++|+|||++++++
T Consensus 73 -~~~~~~~~~~~g~~l------~~~~~~~~~l~~~d~~~~~~~~~-----------~~~~--~~~~~~~~~~dg~~l~~~ 132 (300)
T TIGR03866 73 -PDPELFALHPNGKIL------YIANEDDNLVTVIDIETRKVLAE-----------IPVG--VEPEGMAVSPDGKIVVNT 132 (300)
T ss_pred -CCccEEEECCCCCEE------EEEcCCCCeEEEEECCCCeEEeE-----------eeCC--CCcceEEECCCCCEEEEE
Confidence 124567888765321 22235689999999976443211 1111 236889999999999887
Q ss_pred ecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEE-EEeCCCcEEEEe
Q 003087 179 SNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVA-TSDTNGCLYIFE 257 (849)
Q Consensus 179 g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LA-s~s~Dgtv~LWd 257 (849)
+.++. .+..|+..+.. .+.. + . .......++|||||++|+ +++.+|.|++||
T Consensus 133 ~~~~~------------~~~~~d~~~~~---~~~~------~--~----~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d 185 (300)
T TIGR03866 133 SETTN------------MAHFIDTKTYE---IVDN------V--L----VDQRPRFAEFTADGKELWVSSEIGGTVSVID 185 (300)
T ss_pred ecCCC------------eEEEEeCCCCe---EEEE------E--E----cCCCccEEEECCCCCEEEEEcCCCCEEEEEE
Confidence 76541 25667765431 1100 0 0 112346799999999885 445699999999
Q ss_pred cCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEE-E-EEeCCcEEEEEecCCccc
Q 003087 258 MDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILI-L-ARKSSIITMIDVLSGLKV 324 (849)
Q Consensus 258 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la-~-a~~dgti~lwdl~~~~~l 324 (849)
+.+++. +..+...... ..+ . ...+..++|+||+..+ + ...++.+.+||+.+++.+
T Consensus 186 ~~~~~~-~~~~~~~~~~-------~~~---~-~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~ 242 (300)
T TIGR03866 186 VATRKV-IKKITFEIPG-------VHP---E-AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL 242 (300)
T ss_pred cCccee-eeeeeecccc-------ccc---c-cCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence 998743 3333211000 000 0 1124568999998743 3 345778999999887743
No 102
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.69 E-value=2.6e-15 Score=155.74 Aligned_cols=240 Identities=14% Similarity=0.143 Sum_probs=169.6
Q ss_pred CcccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCC--EEEEEeCCCcEEEEe
Q 003087 6 QPRKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHD--VLGIVDDTHTVYFFK 82 (849)
Q Consensus 6 ~~~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~--~LAs~~~dgtIrlWd 82 (849)
-+-+.+.+.+||.| |.++|||| |.+|+|+|.... ...|.+. .+.+.|+++.|.|+-. .|.||++||.|-+|+
T Consensus 39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~--~qlg~ll-~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKR--KQLGILL-SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred ccccccceeEEEec--ceeEeccCCCCcEEEEeccch--hhhccee-ccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 35577899999986 89999997 789999997532 3345443 2478899999999987 899999999999999
Q ss_pred cCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCc
Q 003087 83 ANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQN 162 (849)
Q Consensus 83 ~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 162 (849)
+..=++....+.|. ..|+.|+..|.+... .+.+.|++++.||+-+|+..-.. .|+ +.
T Consensus 114 ~~~W~~~~slK~H~---~~Vt~lsiHPS~KLA-------LsVg~D~~lr~WNLV~Gr~a~v~---------~L~-~~--- 170 (362)
T KOG0294|consen 114 VGSWELLKSLKAHK---GQVTDLSIHPSGKLA-------LSVGGDQVLRTWNLVRGRVAFVL---------NLK-NK--- 170 (362)
T ss_pred cCCeEEeeeecccc---cccceeEecCCCceE-------EEEcCCceeeeehhhcCccceee---------ccC-Cc---
Confidence 87543333333332 459999999855432 12489999999999888764321 222 22
Q ss_pred eEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCC
Q 003087 163 VICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGK 242 (849)
Q Consensus 163 V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~ 242 (849)
-..|.|+|.|..+++++.++ |-+|...... ++ +.+. .+..+-++-| -++.
T Consensus 171 at~v~w~~~Gd~F~v~~~~~--------------i~i~q~d~A~----v~-----~~i~------~~~r~l~~~~-l~~~ 220 (362)
T KOG0294|consen 171 ATLVSWSPQGDHFVVSGRNK--------------IDIYQLDNAS----VF-----REIE------NPKRILCATF-LDGS 220 (362)
T ss_pred ceeeEEcCCCCEEEEEeccE--------------EEEEecccHh----Hh-----hhhh------ccccceeeee-cCCc
Confidence 34499999999999888875 7788776531 10 0010 1112334555 3788
Q ss_pred EEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEe--cCCE-EEEEEeCCcEEEEEec
Q 003087 243 FVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWW--SDNI-LILARKSSIITMIDVL 319 (849)
Q Consensus 243 ~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws--~D~~-la~a~~dgti~lwdl~ 319 (849)
.|++|+.|+.|++||.+...+ +..+. .|.+.|-+|.+- |++. |++++.||.|+|||+.
T Consensus 221 ~L~vG~d~~~i~~~D~ds~~~-~~~~~------------------AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 221 ELLVGGDNEWISLKDTDSDTP-LTEFL------------------AHENRVKDIASYTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred eEEEecCCceEEEeccCCCcc-ceeee------------------cchhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence 899999999999999997533 22222 466778888754 3454 6789999999999998
Q ss_pred CCc
Q 003087 320 SGL 322 (849)
Q Consensus 320 ~~~ 322 (849)
...
T Consensus 282 ~~~ 284 (362)
T KOG0294|consen 282 MET 284 (362)
T ss_pred ccc
Confidence 763
No 103
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.68 E-value=2.6e-16 Score=165.42 Aligned_cols=248 Identities=14% Similarity=0.096 Sum_probs=170.3
Q ss_pred ccccceEEEEEcCCC-CeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCC
Q 003087 8 RKTKKQVSLFISPRG-ERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANG 85 (849)
Q Consensus 8 ~~~~~v~slafSPdG-~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g 85 (849)
.+++.|.++|=.|+. ..+|+|+ ||.|+|||+.. .....++.. +.+.|+.+++.- ....++++|.||+.|..+|
T Consensus 64 gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq--R~~~~~f~A-H~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~ 138 (433)
T KOG0268|consen 64 GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ--RECIRTFKA-HEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG 138 (433)
T ss_pred ccccccchhhcCcchhhhhhccccCceEEEEehhh--hhhhheeec-ccCceeeEEecc--cceEEecCCcceeeeeccC
Confidence 478899999999988 7899997 89999999763 122223333 356889999886 7788999999999999887
Q ss_pred ccceecccccc----cc---c----------------------------ccEEEEEecCCcccccccceeEEEEeCCCcE
Q 003087 86 EEITRFTNKHL----KV---S----------------------------LPIIGLIAQDETDVQRSCLCSFTVFTSDGFL 130 (849)
Q Consensus 86 ~~~~~l~~~~~----~~---~----------------------------~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v 130 (849)
..+.++.+... ++ . .+|.++.|+|.-. ..++++..|+.|
T Consensus 139 ~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvET------sILas~~sDrsI 212 (433)
T KOG0268|consen 139 PPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVET------SILASCASDRSI 212 (433)
T ss_pred CcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcc------hheeeeccCCce
Confidence 66555544310 00 0 1122333333110 135666899999
Q ss_pred EEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCccc
Q 003087 131 HQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQ 210 (849)
Q Consensus 131 ~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~ 210 (849)
-++|..++....... +. -.-++++|+|++--+++|..|- .+..+|+..-.
T Consensus 213 vLyD~R~~~Pl~KVi---------~~----mRTN~IswnPeafnF~~a~ED~-------------nlY~~DmR~l~---- 262 (433)
T KOG0268|consen 213 VLYDLRQASPLKKVI---------LT----MRTNTICWNPEAFNFVAANEDH-------------NLYTYDMRNLS---- 262 (433)
T ss_pred EEEecccCCccceee---------ee----ccccceecCccccceeeccccc-------------cceehhhhhhc----
Confidence 999998876543211 11 1258899999887776665553 36677664311
Q ss_pred ceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCC
Q 003087 211 LYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPI 290 (849)
Q Consensus 211 l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (849)
..+..++| |...|.+|.|||-|+-+||||.|.+|+|+.+..+.. --.+ + +-|.
T Consensus 263 -------~p~~v~~d--hvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S-RdiY--h------------tkRM--- 315 (433)
T KOG0268|consen 263 -------RPLNVHKD--HVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS-RDIY--H------------TKRM--- 315 (433)
T ss_pred -------ccchhhcc--cceeEEEeccCCCcchhccccccceEEEeecCCCcc-hhhh--h------------Hhhh---
Confidence 01123567 889999999999999999999999999999986521 1111 0 0112
Q ss_pred CCcEEEEEecCCE-EEEEEeCCcEEEEEecCCcc
Q 003087 291 SDITDFAWWSDNI-LILARKSSIITMIDVLSGLK 323 (849)
Q Consensus 291 ~~v~~vaws~D~~-la~a~~dgti~lwdl~~~~~ 323 (849)
..|..|.||.|.+ +++|+.||+|+||.-..-++
T Consensus 316 q~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 316 QHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred heeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence 3589999999987 66899999999998765543
No 104
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.68 E-value=3e-15 Score=160.53 Aligned_cols=239 Identities=11% Similarity=0.158 Sum_probs=169.6
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccce
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEIT 89 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~ 89 (849)
..+.++...|-...+.+|+ |.++.+.|...+ +.+.++.+ +.-.|+++.|+|+....++++.|.+||||.+......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~--q~l~~~~G-h~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSN--QILATLKG-HTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchh--hhhhhccC-cceEEEEEEeccchhheeecCCcceEEeeccccccCc
Confidence 5678888888877888888 458889885432 22333332 2567899999999999999999999999998632222
Q ss_pred ecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEc
Q 003087 90 RFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYH 169 (849)
Q Consensus 90 ~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafs 169 (849)
.+...| ..+|.++...|.+. .|..++.||+...-++++|.....-. -. ...-.+.+.+||
T Consensus 297 ~~~~~h---~~~V~~ls~h~tge-------YllsAs~d~~w~Fsd~~~g~~lt~vs---------~~-~s~v~~ts~~fH 356 (506)
T KOG0289|consen 297 TSSRPH---EEPVTGLSLHPTGE-------YLLSASNDGTWAFSDISSGSQLTVVS---------DE-TSDVEYTSAAFH 356 (506)
T ss_pred cccccc---cccceeeeeccCCc-------EEEEecCCceEEEEEccCCcEEEEEe---------ec-cccceeEEeeEc
Confidence 332322 25788887766443 46667999999999998877532211 00 011248999999
Q ss_pred CCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeC
Q 003087 170 PELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDT 249 (849)
Q Consensus 170 Pdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~ 249 (849)
|||.++++|..|+ .|++|++.+.... .+++| |++.|.+|+||-+|=+||++..
T Consensus 357 pDgLifgtgt~d~-------------~vkiwdlks~~~~------------a~Fpg--ht~~vk~i~FsENGY~Lat~ad 409 (506)
T KOG0289|consen 357 PDGLIFGTGTPDG-------------VVKIWDLKSQTNV------------AKFPG--HTGPVKAISFSENGYWLATAAD 409 (506)
T ss_pred CCceEEeccCCCc-------------eEEEEEcCCcccc------------ccCCC--CCCceeEEEeccCceEEEEEec
Confidence 9999998887776 3899999875321 23566 9999999999999999999999
Q ss_pred CCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEec
Q 003087 250 NGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVL 319 (849)
Q Consensus 250 Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~ 319 (849)
||.|+|||+...+- .++++.. + ..++.++.|-+-|. |++++. .|+|+-..
T Consensus 410 d~~V~lwDLRKl~n-~kt~~l~----------------~-~~~v~s~~fD~SGt~L~~~g~--~l~Vy~~~ 460 (506)
T KOG0289|consen 410 DGSVKLWDLRKLKN-FKTIQLD----------------E-KKEVNSLSFDQSGTYLGIAGS--DLQVYICK 460 (506)
T ss_pred CCeEEEEEehhhcc-cceeecc----------------c-cccceeEEEcCCCCeEEeecc--eeEEEEEe
Confidence 99999999987642 3444321 1 13588889977676 555644 45555444
No 105
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.67 E-value=1.7e-15 Score=156.45 Aligned_cols=253 Identities=12% Similarity=0.102 Sum_probs=171.2
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC---
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN--- 84 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~--- 84 (849)
+++.||.|+-......++++| |.+..||..+.+ ..+.+++. +.+.|++++|+|.|.++++|+.|+|.++|...
T Consensus 147 HkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg--~CL~~Y~G-H~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~ 223 (481)
T KOG0300|consen 147 HKDGIWHVAADSTQPICGTASADHTARIWSLESG--ACLATYTG-HTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNW 223 (481)
T ss_pred cccceeeehhhcCCcceeecccccceeEEeeccc--cceeeecc-cccceeeEEeccccceEEEccCCcchHHHHHhhcC
Confidence 558899999887777889998 678999998753 33444443 37889999999999999999999999999721
Q ss_pred ---C---------ccceecccccc---c---cc--ccEE--EEEec-CCccc---ccc-cceeEEEEeCCCcEEEEEecC
Q 003087 85 ---G---------EEITRFTNKHL---K---VS--LPII--GLIAQ-DETDV---QRS-CLCSFTVFTSDGFLHQIEISQ 137 (849)
Q Consensus 85 ---g---------~~~~~l~~~~~---~---~~--~~V~--~l~fs-~~~~~---~~s-~~~~~~~~s~Dg~v~lw~~~~ 137 (849)
. ++-..-...+. + .+ ..|. -+.|. ..+.+ -|- +..++.+++-|.+..+||+.+
T Consensus 224 ~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEt 303 (481)
T KOG0300|consen 224 EVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVET 303 (481)
T ss_pred cCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeecc
Confidence 1 10000000000 0 00 0111 11110 00100 011 113678889999999999999
Q ss_pred CCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceecccc
Q 003087 138 DPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIE 217 (849)
Q Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~ 217 (849)
|.....+ . +|....+-+.-||.-+++++++.|.| .++||..... +.+
T Consensus 304 ge~v~~L-----------t-GHd~ELtHcstHptQrLVvTsSrDtT-------------FRLWDFReaI--~sV------ 350 (481)
T KOG0300|consen 304 GEVVNIL-----------T-GHDSELTHCSTHPTQRLVVTSSRDTT-------------FRLWDFREAI--QSV------ 350 (481)
T ss_pred Cceeccc-----------c-CcchhccccccCCcceEEEEeccCce-------------eEeccchhhc--cee------
Confidence 8876543 3 44556888889999999988888864 8999987531 111
Q ss_pred ceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEE
Q 003087 218 GLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFA 297 (849)
Q Consensus 218 ~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~va 297 (849)
. .+.| |++.|.++.|.-|.+ ++|++.|.||++||+.+-+..+.+... ..++..|+
T Consensus 351 ~---VFQG--HtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRt-------------------dS~~NRva 405 (481)
T KOG0300|consen 351 A---VFQG--HTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRT-------------------DSPANRVA 405 (481)
T ss_pred e---eecc--cccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeec-------------------CCccceeE
Confidence 1 2346 999999999987665 678999999999999976544433321 13355567
Q ss_pred EecCCE-EEEEEeCCcEEEEEecCCc
Q 003087 298 WWSDNI-LILARKSSIITMIDVLSGL 322 (849)
Q Consensus 298 ws~D~~-la~a~~dgti~lwdl~~~~ 322 (849)
-+-.+. ||+-..+..|+++|+++.+
T Consensus 406 vs~g~~iIAiPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 406 VSKGHPIIAIPHDNRQVRLFDLNGNR 431 (481)
T ss_pred eecCCceEEeccCCceEEEEecCCCc
Confidence 666764 5566778899999999876
No 106
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2.9e-15 Score=162.33 Aligned_cols=217 Identities=10% Similarity=0.080 Sum_probs=151.9
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCC----
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANG---- 85 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g---- 85 (849)
+.|.+|+-+|+|.+|+.|. .+.+.||.+.. |..+..+. .|-..|+++.||-||.+|.|||.||.|++|.+..
T Consensus 82 g~v~al~s~n~G~~l~ag~i~g~lYlWelss--G~LL~v~~-aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a 158 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLAGTISGNLYLWELSS--GILLNVLS-AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA 158 (476)
T ss_pred cceeeeecCCCceEEEeecccCcEEEEEecc--ccHHHHHH-hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc
Confidence 6799999999999998884 68899998764 34443332 2356799999999999999999999999998632
Q ss_pred ------ccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceecccc
Q 003087 86 ------EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQF 159 (849)
Q Consensus 86 ------~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (849)
+.+..+. ++.-+|.++....++ .+..++++|.|.++++||++.|...... -+
T Consensus 159 ~~~~~~~p~~~f~----~HtlsITDl~ig~Gg-----~~~rl~TaS~D~t~k~wdlS~g~LLlti-------------~f 216 (476)
T KOG0646|consen 159 DNDHSVKPLHIFS----DHTLSITDLQIGSGG-----TNARLYTASEDRTIKLWDLSLGVLLLTI-------------TF 216 (476)
T ss_pred ccCCCccceeeec----cCcceeEEEEecCCC-----ccceEEEecCCceEEEEEeccceeeEEE-------------ec
Confidence 1111111 122457776665543 2236899999999999999988754221 23
Q ss_pred CCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCccc-c--eecccc-ceeeccCCCcccc--ccc
Q 003087 160 PQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQ-L--YTTQIE-GLYCEPKGHEVQL--AHP 233 (849)
Q Consensus 160 ~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~-l--~~~~~~-~~~~~~~g~~h~~--~V~ 233 (849)
+..+.+++.+|-++.+.+|+.++ +|+ +-.+......+. + ...... ..+..+.| |.+ .|.
T Consensus 217 p~si~av~lDpae~~~yiGt~~G--~I~-----------~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~G--h~~~~~IT 281 (476)
T KOG0646|consen 217 PSSIKAVALDPAERVVYIGTEEG--KIF-----------QNLLFKLSGQSAGVNQKGRHEENTQINVLVG--HENESAIT 281 (476)
T ss_pred CCcceeEEEcccccEEEecCCcc--eEE-----------eeehhcCCcccccccccccccccceeeeecc--ccCCccee
Confidence 56799999999999999998886 333 222211100000 0 000000 11223456 666 999
Q ss_pred eEEEccCCCEEEEEeCCCcEEEEecCCCccccccc
Q 003087 234 KVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKF 268 (849)
Q Consensus 234 ~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~ 268 (849)
++++|-||.+|+||+.||+|.|||+.+.++ +++.
T Consensus 282 cLais~DgtlLlSGd~dg~VcvWdi~S~Q~-iRtl 315 (476)
T KOG0646|consen 282 CLAISTDGTLLLSGDEDGKVCVWDIYSKQC-IRTL 315 (476)
T ss_pred EEEEecCccEEEeeCCCCCEEEEecchHHH-HHHH
Confidence 999999999999999999999999998876 5554
No 107
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=9.2e-15 Score=169.10 Aligned_cols=249 Identities=16% Similarity=0.226 Sum_probs=170.6
Q ss_pred ccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Ccc
Q 003087 10 TKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEE 87 (849)
Q Consensus 10 ~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~ 87 (849)
.+....|.|.|+|+.|.+++ ++.|++|+...+...|--... ....| .+..-++..|++|+.+++|.++... |+.
T Consensus 13 t~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~--~g~~v--~~ia~~s~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 13 TGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI--SGELV--SSIACYSNHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred cCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc--cCcee--EEEeecccceEEeeccceEEEeeCCCCCc
Confidence 36688999999999998885 789999986543222221111 12333 4444567899999999999999985 443
Q ss_pred ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEE
Q 003087 88 ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTD 167 (849)
Q Consensus 88 ~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sva 167 (849)
-..+.+ +..++..++|+-++.. ++.+|.|-.|++.+....... +.+.| |...|.+|.
T Consensus 89 ~~iL~R----ftlp~r~~~v~g~g~~-------iaagsdD~~vK~~~~~D~s~~-----------~~lrg-h~apVl~l~ 145 (933)
T KOG1274|consen 89 DTILAR----FTLPIRDLAVSGSGKM-------IAAGSDDTAVKLLNLDDSSQE-----------KVLRG-HDAPVLQLS 145 (933)
T ss_pred cceeee----eeccceEEEEecCCcE-------EEeecCceeEEEEeccccchh-----------eeecc-cCCceeeee
Confidence 222222 2246788888765543 334478888999887654432 34554 467899999
Q ss_pred EcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEE
Q 003087 168 YHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATS 247 (849)
Q Consensus 168 fsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~ 247 (849)
|+|+|.+|||+++||+ |++|++..+.-...+. ++... .+......+..++|+|+|..+|..
T Consensus 146 ~~p~~~fLAvss~dG~-------------v~iw~~~~~~~~~tl~-----~v~k~-n~~~~s~i~~~~aW~Pk~g~la~~ 206 (933)
T KOG1274|consen 146 YDPKGNFLAVSSCDGK-------------VQIWDLQDGILSKTLT-----GVDKD-NEFILSRICTRLAWHPKGGTLAVP 206 (933)
T ss_pred EcCCCCEEEEEecCce-------------EEEEEcccchhhhhcc-----cCCcc-ccccccceeeeeeecCCCCeEEee
Confidence 9999999999999973 8999998752111110 11100 000013456789999999889999
Q ss_pred eCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecCC
Q 003087 248 DTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVLSG 321 (849)
Q Consensus 248 s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~ 321 (849)
..|++|++++..+... ++.+.. +.+...+.+++|+|.|+ ||++..||.|.|||+.+.
T Consensus 207 ~~d~~Vkvy~r~~we~---~f~Lr~--------------~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~ 264 (933)
T KOG1274|consen 207 PVDNTVKVYSRKGWEL---QFKLRD--------------KLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTH 264 (933)
T ss_pred ccCCeEEEEccCCcee---heeecc--------------cccccceEEEEEcCCCcEEeeeccCCcEEEEecccc
Confidence 9999999999998743 333211 11223478999999986 677789999999999954
No 108
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=1.7e-16 Score=178.74 Aligned_cols=228 Identities=11% Similarity=0.132 Sum_probs=164.9
Q ss_pred EEEEcCCCCeEEEEeCC-eEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cccceecc
Q 003087 15 SLFISPRGERVAVAAVN-QVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEITRFT 92 (849)
Q Consensus 15 slafSPdG~~LAsas~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~~~l~ 92 (849)
.+.+=.-++.++.|+.+ .+-+|..... ..+-.+.+ +...|.+|.|+++-.+||.|+.+|||||||+. ++.+.++.
T Consensus 33 ~lk~~~s~r~~~~Gg~~~k~~L~~i~kp--~~i~S~~~-hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLt 109 (825)
T KOG0267|consen 33 CLKIRKSSRSLVTGGEDEKVNLWAIGKP--NAITSLTG-HESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLT 109 (825)
T ss_pred eeeeeccceeeccCCCceeeccccccCC--chhheeec-cCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhh
Confidence 33333445677777754 4457864321 11112232 36789999999999999999999999999997 77777887
Q ss_pred cccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCC
Q 003087 93 NKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPEL 172 (849)
Q Consensus 93 ~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg 172 (849)
+|. ..+.+|.|+|-+. .++.|+.|+-+++||+...++...+ .| |...|.+++|+|+|
T Consensus 110 gh~----~~~~sv~f~P~~~-------~~a~gStdtd~~iwD~Rk~Gc~~~~-----------~s-~~~vv~~l~lsP~G 166 (825)
T KOG0267|consen 110 GHL----LNITSVDFHPYGE-------FFASGSTDTDLKIWDIRKKGCSHTY-----------KS-HTRVVDVLRLSPDG 166 (825)
T ss_pred ccc----cCcceeeeccceE-------EeccccccccceehhhhccCceeee-----------cC-CcceeEEEeecCCC
Confidence 765 3578899998332 2345589999999999876664443 34 67789999999999
Q ss_pred ceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCc
Q 003087 173 SLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGC 252 (849)
Q Consensus 173 ~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgt 252 (849)
++++++|.|. ++++||...+ .++..+++ |...|.++-|.|..-+|++||.|++
T Consensus 167 r~v~~g~ed~-------------tvki~d~~ag------------k~~~ef~~--~e~~v~sle~hp~e~Lla~Gs~d~t 219 (825)
T KOG0267|consen 167 RWVASGGEDN-------------TVKIWDLTAG------------KLSKEFKS--HEGKVQSLEFHPLEVLLAPGSSDRT 219 (825)
T ss_pred ceeeccCCcc-------------eeeeeccccc------------cccccccc--ccccccccccCchhhhhccCCCCce
Confidence 9999988875 4899987543 12223455 7888999999999999999999999
Q ss_pred EEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEE
Q 003087 253 LYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIIT 314 (849)
Q Consensus 253 v~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~ 314 (849)
|++||+.+-.. +..- +....+|.+.+|.||+..+..+..-+++
T Consensus 220 v~f~dletfe~-I~s~------------------~~~~~~v~~~~fn~~~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 220 VRFWDLETFEV-ISSG------------------KPETDGVRSLAFNPDGKIVLSGEQISLS 262 (825)
T ss_pred eeeeccceeEE-eecc------------------CCccCCceeeeecCCceeeecCchhhhh
Confidence 99999986422 1110 1235679999999999866555443333
No 109
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.66 E-value=8.1e-16 Score=174.70 Aligned_cols=242 Identities=12% Similarity=0.167 Sum_probs=162.4
Q ss_pred EEEEc-CCCCeEEEEe-CCeEEEEecCCCC-CcceeeeeecCCCCEEEEEECC-CCCEEEEEeCCCcEEEEecCCcc-ce
Q 003087 15 SLFIS-PRGERVAVAA-VNQVTILQKDDDY-QEPCGIFNCTGLGASIYGAWSE-SHDVLGIVDDTHTVYFFKANGEE-IT 89 (849)
Q Consensus 15 slafS-PdG~~LAsas-~~~i~iw~~~~~~-~~~~~~~~~~~~~~v~~vafSP-DG~~LAs~~~dgtIrlWd~~g~~-~~ 89 (849)
.|.|+ -+.++||+++ .|.|.+||+.... .+.+..|. +|.-.++++.|++ .-.+|.|||.||+|++||+..+. ..
T Consensus 92 DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~-EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~ 170 (839)
T KOG0269|consen 92 DVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFN-EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS 170 (839)
T ss_pred hcccccchhhhheeecCCCcEEEEecCccccchhhhHhh-hhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc
Confidence 34454 3567899998 4788999975310 11111222 3456789999997 56788899999999999996433 22
Q ss_pred ecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEc
Q 003087 90 RFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYH 169 (849)
Q Consensus 90 ~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafs 169 (849)
+... .+-+|+.|.|+|.. .+.|+++...|.+++||+..... .. +.|. .|.++|.|+.||
T Consensus 171 t~~~----nSESiRDV~fsp~~------~~~F~s~~dsG~lqlWDlRqp~r-~~---------~k~~-AH~GpV~c~nwh 229 (839)
T KOG0269|consen 171 TFRS----NSESIRDVKFSPGY------GNKFASIHDSGYLQLWDLRQPDR-CE---------KKLT-AHNGPVLCLNWH 229 (839)
T ss_pred cccc----cchhhhceeeccCC------CceEEEecCCceEEEeeccCchh-HH---------HHhh-cccCceEEEeec
Confidence 2221 23579999999843 34688889999999999975332 11 2233 346789999999
Q ss_pred CCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCE-EEEEe
Q 003087 170 PELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKF-VATSD 248 (849)
Q Consensus 170 Pdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~-LAs~s 248 (849)
|++.+||+||.|++ |++|++.++.....+ ++. ...+|.+|.|-|+-++ |||.+
T Consensus 230 Pnr~~lATGGRDK~-------------vkiWd~t~~~~~~~~-------tIn------Tiapv~rVkWRP~~~~hLAtcs 283 (839)
T KOG0269|consen 230 PNREWLATGGRDKM-------------VKIWDMTDSRAKPKH-------TIN------TIAPVGRVKWRPARSYHLATCS 283 (839)
T ss_pred CCCceeeecCCCcc-------------EEEEeccCCCcccee-------EEe------ecceeeeeeeccCccchhhhhh
Confidence 99999999999974 899999875321111 110 1247889999999876 77765
Q ss_pred --CCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE--EEEEEeCCcEEEEEecCCc
Q 003087 249 --TNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI--LILARKSSIITMIDVLSGL 322 (849)
Q Consensus 249 --~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~--la~a~~dgti~lwdl~~~~ 322 (849)
.|-.|++||+... =.|...- -+|...+..|+|-.... +.++++||+|..-.+++..
T Consensus 284 mv~dtsV~VWDvrRP-----YIP~~t~-------------~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 284 MVVDTSVHVWDVRRP-----YIPYATF-------------LEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred ccccceEEEEeeccc-----cccceee-------------eccCccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 4889999999854 1122111 13556677777744222 5678889988655555544
No 110
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=2e-14 Score=161.78 Aligned_cols=251 Identities=15% Similarity=0.144 Sum_probs=178.9
Q ss_pred cceEEEEEcCCCCeEEEE-eCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cccc
Q 003087 11 KKQVSLFISPRGERVAVA-AVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEI 88 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsa-s~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~ 88 (849)
..|.++|||.+.+.||++ .++.|+||+...++-.. ..+..+....|.+++|+ +|..|-|.+.+|+|--||+. ++.+
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~-~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~ 103 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE-PVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQK 103 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCCCceee-EEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCcee
Confidence 568999999999999999 58999999987643111 11222126689999999 66678899999999999996 7776
Q ss_pred eecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEE
Q 003087 89 TRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDY 168 (849)
Q Consensus 89 ~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svaf 168 (849)
..+.. .+.+||+++.+|..+ .+++.+.||.+...++.++... +. ..|. ..+..|.+++|
T Consensus 104 ~~~d~----~gg~IWsiai~p~~~-------~l~IgcddGvl~~~s~~p~~I~--~~-------r~l~-rq~sRvLslsw 162 (691)
T KOG2048|consen 104 YNIDS----NGGAIWSIAINPENT-------ILAIGCDDGVLYDFSIGPDKIT--YK-------RSLM-RQKSRVLSLSW 162 (691)
T ss_pred EEecC----CCcceeEEEeCCccc-------eEEeecCCceEEEEecCCceEE--EE-------eecc-cccceEEEEEe
Confidence 66533 236899999988443 2455579997767766665542 11 1222 22457999999
Q ss_pred cCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEe
Q 003087 169 HPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSD 248 (849)
Q Consensus 169 sPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s 248 (849)
+|+|..||+|+.|+ .|++||+..+.... +.+.|.+++- ++ ..--||+|.|=-|| .||+|+
T Consensus 163 ~~~~~~i~~Gs~Dg-------------~Iriwd~~~~~t~~-~~~~~~d~l~---k~--~~~iVWSv~~Lrd~-tI~sgD 222 (691)
T KOG2048|consen 163 NPTGTKIAGGSIDG-------------VIRIWDVKSGQTLH-IITMQLDRLS---KR--EPTIVWSVLFLRDS-TIASGD 222 (691)
T ss_pred cCCccEEEecccCc-------------eEEEEEcCCCceEE-Eeeecccccc---cC--CceEEEEEEEeecC-cEEEec
Confidence 99999998888785 49999998764332 2233332221 11 23468999988666 478899
Q ss_pred CCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecC-CEEEEEEeCCcEEEEEecCCcc
Q 003087 249 TNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSD-NILILARKSSIITMIDVLSGLK 323 (849)
Q Consensus 249 ~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D-~~la~a~~dgti~lwdl~~~~~ 323 (849)
.-|+|+.||...+.. ++.+. .|.+.|.+++-.++ +++.+|+-|+.|.-+...+++.
T Consensus 223 S~G~V~FWd~~~gTL-iqS~~------------------~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 223 SAGTVTFWDSIFGTL-IQSHS------------------CHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred CCceEEEEcccCcch-hhhhh------------------hhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence 999999999998854 33433 24466888887676 5788999999999998888753
No 111
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.65 E-value=1.7e-14 Score=154.83 Aligned_cols=245 Identities=11% Similarity=0.101 Sum_probs=173.9
Q ss_pred cccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-
Q 003087 7 PRKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN- 84 (849)
Q Consensus 7 ~~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~- 84 (849)
|.+..+|.++.|+|+...++++| |-.|+||...+.. .+. .... +...|+.+...|.|.+|.+++.||+.-+-|..
T Consensus 258 ~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-~~~-~~~~-h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~ 334 (506)
T KOG0289|consen 258 KGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-EPT-SSRP-HEEPVTGLSLHPTGEYLLSASNDGTWAFSDISS 334 (506)
T ss_pred cCcceEEEEEEeccchhheeecCCcceEEeecccccc-Ccc-cccc-ccccceeeeeccCCcEEEEecCCceEEEEEccC
Confidence 44557899999999999999998 5689999865432 111 1112 36789999999999999999999999999986
Q ss_pred CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceE
Q 003087 85 GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVI 164 (849)
Q Consensus 85 g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~ 164 (849)
|..+....... ..-.+.+.+|.||+...+. ++.||.|++||++.+.... .|.| |...|.
T Consensus 335 g~~lt~vs~~~--s~v~~ts~~fHpDgLifgt-------gt~d~~vkiwdlks~~~~a-----------~Fpg-ht~~vk 393 (506)
T KOG0289|consen 335 GSQLTVVSDET--SDVEYTSAAFHPDGLIFGT-------GTPDGVVKIWDLKSQTNVA-----------KFPG-HTGPVK 393 (506)
T ss_pred CcEEEEEeecc--ccceeEEeeEcCCceEEec-------cCCCceEEEEEcCCccccc-----------cCCC-CCCcee
Confidence 66554433211 1134889999999876544 4899999999998655432 3454 577899
Q ss_pred EEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEE
Q 003087 165 CTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFV 244 (849)
Q Consensus 165 svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~L 244 (849)
+++|+.+|=+||++..|+ .|++||+....++..+.. . ...+|.++.|-+-|++|
T Consensus 394 ~i~FsENGY~Lat~add~-------------~V~lwDLRKl~n~kt~~l---------~----~~~~v~s~~fD~SGt~L 447 (506)
T KOG0289|consen 394 AISFSENGYWLATAADDG-------------SVKLWDLRKLKNFKTIQL---------D----EKKEVNSLSFDQSGTYL 447 (506)
T ss_pred EEEeccCceEEEEEecCC-------------eEEEEEehhhcccceeec---------c----ccccceeEEEcCCCCeE
Confidence 999999999999988775 289999976543333311 0 12379999999999999
Q ss_pred EEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEe
Q 003087 245 ATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDV 318 (849)
Q Consensus 245 As~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl 318 (849)
+.+|.|=.|++.+-.+ +.|....+. ..|.+....|.|-...+ +++++-|..++++.+
T Consensus 448 ~~~g~~l~Vy~~~k~~-----k~W~~~~~~------------~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 448 GIAGSDLQVYICKKKT-----KSWTEIKEL------------ADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EeecceeEEEEEeccc-----ccceeeehh------------hhcccccceeeecccceEEeeccchhheEEeec
Confidence 9998776666665443 355432210 12333445566655444 667888888888764
No 112
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=1.3e-14 Score=150.41 Aligned_cols=217 Identities=14% Similarity=0.116 Sum_probs=136.5
Q ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEEecCC---ccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcE
Q 003087 54 LGASIYGAWSESHDVLGIVDDTHTVYFFKANG---EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFL 130 (849)
Q Consensus 54 ~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g---~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v 130 (849)
...|++++||.||+.||+++.|++||||++.. ++. +..+..... ..-..|+|+||-... ++.+-...++
T Consensus 86 ~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eH-r~~R~nve~-dhpT~V~FapDc~s~------vv~~~~g~~l 157 (420)
T KOG2096|consen 86 KKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEH-RCIRQNVEY-DHPTRVVFAPDCKSV------VVSVKRGNKL 157 (420)
T ss_pred CCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhh-hHhhccccC-CCceEEEECCCcceE------EEEEccCCEE
Confidence 67899999999999999999999999999863 221 111111111 123568898864321 2222344568
Q ss_pred EEEEecCCCCccc-cc-ccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCc
Q 003087 131 HQIEISQDPSASI-SS-ASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLEL 208 (849)
Q Consensus 131 ~lw~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~ 208 (849)
++|.....+.... +. ..++. ..|...|.-.|-.+-.--.+++|++++.|.+ |-||+..+. .+
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~--~~f~~kh~v~~i~iGiA~~~k~imsas~dt~-------------i~lw~lkGq-~L 221 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDN--LEFERKHQVDIINIGIAGNAKYIMSASLDTK-------------ICLWDLKGQ-LL 221 (420)
T ss_pred EEEEeeecccCCCCcccccccc--cccchhcccceEEEeecCCceEEEEecCCCc-------------EEEEecCCc-ee
Confidence 8887643221110 00 00000 1122222334555666778889999988863 889998852 22
Q ss_pred ccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCC
Q 003087 209 EQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTK 288 (849)
Q Consensus 209 ~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 288 (849)
+.|-+ .+..-+..+.||||++||++++.--|++|.+--.+. ...|+...++ .| ++
T Consensus 222 ~~idt--------------nq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kd------G~fqev~rvf-~L----kG 276 (420)
T KOG2096|consen 222 QSIDT--------------NQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKD------GTFQEVKRVF-SL----KG 276 (420)
T ss_pred eeecc--------------ccccccceeeCCCCcEEEEecCCCCceEEEEEeccC------cchhhhhhhh-ee----cc
Confidence 22211 234456789999999999999999999998742211 1112222211 11 36
Q ss_pred CCCCcEEEEEecCC-EEEEEEeCCcEEEEEec
Q 003087 289 PISDITDFAWWSDN-ILILARKSSIITMIDVL 319 (849)
Q Consensus 289 ~~~~v~~vaws~D~-~la~a~~dgti~lwdl~ 319 (849)
|...|..++||++. ++++++.||+++|||+.
T Consensus 277 H~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 277 HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred chhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 77889999999997 48899999999999985
No 113
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.64 E-value=7.6e-15 Score=166.88 Aligned_cols=263 Identities=12% Similarity=0.184 Sum_probs=173.8
Q ss_pred cceEEEEEcCCCCeEEEEeCCeEEEEecCCC-CCcceeeeeecC----CCCEEEEEEC-CCCCEEEEEeCCCcEEEEecC
Q 003087 11 KKQVSLFISPRGERVAVAAVNQVTILQKDDD-YQEPCGIFNCTG----LGASIYGAWS-ESHDVLGIVDDTHTVYFFKAN 84 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~~~i~iw~~~~~-~~~~~~~~~~~~----~~~v~~vafS-PDG~~LAs~~~dgtIrlWd~~ 84 (849)
....+|+..+|-..|++|+-...+|.-.... ....+. ...+. .-....|.|+ -+.++||+++..|.|-+||++
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~-~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCN-HRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEecccceeeEeeCcccCCccee-eecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 4567888899999999998776777754322 111111 11111 1122457776 378999999999999999996
Q ss_pred C----ccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccC
Q 003087 85 G----EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFP 160 (849)
Q Consensus 85 g----~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (849)
- +++..+..| ..+|..+.|++.. + +.+.++|.||+|++||+......+. +.+ ..
T Consensus 119 k~~rnk~l~~f~EH----~Rs~~~ldfh~te----p--~iliSGSQDg~vK~~DlR~~~S~~t-----------~~~-nS 176 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEH----ERSANKLDFHSTE----P--NILISGSQDGTVKCWDLRSKKSKST-----------FRS-NS 176 (839)
T ss_pred ccccchhhhHhhhh----ccceeeeeeccCC----c--cEEEecCCCceEEEEeeeccccccc-----------ccc-cc
Confidence 3 233333332 3679999997521 1 2366678999999999986554332 233 24
Q ss_pred CceEEEEEcCC-CceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEcc
Q 003087 161 QNVICTDYHPE-LSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISP 239 (849)
Q Consensus 161 ~~V~svafsPd-g~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSP 239 (849)
..|..|+|+|. +..+|++...| .+++||+......+ .++.. |.+.|.++.|+|
T Consensus 177 ESiRDV~fsp~~~~~F~s~~dsG-------------~lqlWDlRqp~r~~-----------~k~~A--H~GpV~c~nwhP 230 (839)
T KOG0269|consen 177 ESIRDVKFSPGYGNKFASIHDSG-------------YLQLWDLRQPDRCE-----------KKLTA--HNGPVLCLNWHP 230 (839)
T ss_pred hhhhceeeccCCCceEEEecCCc-------------eEEEeeccCchhHH-----------HHhhc--ccCceEEEeecC
Confidence 57999999995 55666654443 48999987642111 11122 888999999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE--EEEEE--eCCcEEE
Q 003087 240 QGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI--LILAR--KSSIITM 315 (849)
Q Consensus 240 DG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~--la~a~--~dgti~l 315 (849)
++.+|||||.|++|+||++.+.+. -...+ + .-..+|-.|.|-|+.. ||+.+ .|-.|.|
T Consensus 231 nr~~lATGGRDK~vkiWd~t~~~~-~~~~t------------I-----nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~V 292 (839)
T KOG0269|consen 231 NREWLATGGRDKMVKIWDMTDSRA-KPKHT------------I-----NTIAPVGRVKWRPARSYHLATCSMVVDTSVHV 292 (839)
T ss_pred CCceeeecCCCccEEEEeccCCCc-cceeE------------E-----eecceeeeeeeccCccchhhhhhccccceEEE
Confidence 999999999999999999996532 11111 1 1135688899999864 66543 5678999
Q ss_pred EEecCCc----cccccCC-------CCCCeEEEEEe
Q 003087 316 IDVLSGL----KVKETDP-------KLRGHVFLLES 340 (849)
Q Consensus 316 wdl~~~~----~l~~~~~-------~~~g~~~~Le~ 340 (849)
||+...= .+.+|.+ .+.+..+++.+
T Consensus 293 WDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~ 328 (839)
T KOG0269|consen 293 WDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSC 328 (839)
T ss_pred EeeccccccceeeeccCccccceeccCCCceeeEee
Confidence 9998642 2346555 23446666655
No 114
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.63 E-value=1.4e-14 Score=163.12 Aligned_cols=233 Identities=13% Similarity=0.148 Sum_probs=162.8
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecC-CCCEEE-EEECC-CCCEEEEEeCCCcEEEEecCC-
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTG-LGASIY-GAWSE-SHDVLGIVDDTHTVYFFKANG- 85 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~-~~~v~~-vafSP-DG~~LAs~~~dgtIrlWd~~g- 85 (849)
.-|..|++-+++ .++++| |+++++|...++. -++.....+ .+.+.. +++-+ |+-.|.+|+.|++|-+|.+++
T Consensus 15 ~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~--~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~ 91 (745)
T KOG0301|consen 15 SDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQ--YLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA 91 (745)
T ss_pred cchheeEecCCe-EEeecCCCCceeeeeccCcc--cccceecccCcceeeccceeccccCcceEeecccceEEEEecCCC
Confidence 446777777655 666777 7899999875431 122222112 344433 77764 777799999999999999985
Q ss_pred ccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEE
Q 003087 86 EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVIC 165 (849)
Q Consensus 86 ~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~s 165 (849)
..+..+.+|. ..|+++..-.+.. +.+.|-|.|+++|-+.. +.. +++ +|+..|++
T Consensus 92 ~P~~~LkgH~----snVC~ls~~~~~~--------~iSgSWD~TakvW~~~~--l~~-----------~l~-gH~asVWA 145 (745)
T KOG0301|consen 92 EPLYTLKGHK----SNVCSLSIGEDGT--------LISGSWDSTAKVWRIGE--LVY-----------SLQ-GHTASVWA 145 (745)
T ss_pred Cchhhhhccc----cceeeeecCCcCc--------eEecccccceEEecchh--hhc-----------ccC-Ccchheee
Confidence 4566665554 5688887533222 33447899999997652 211 244 44668999
Q ss_pred EEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEE
Q 003087 166 TDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVA 245 (849)
Q Consensus 166 vafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LA 245 (849)
|++-|++ .+++||.|+| |++|.-.. .++.++| |.+-|+.+++=|++.+ +
T Consensus 146 v~~l~e~-~~vTgsaDKt-------------IklWk~~~--------------~l~tf~g--HtD~VRgL~vl~~~~f-l 194 (745)
T KOG0301|consen 146 VASLPEN-TYVTGSADKT-------------IKLWKGGT--------------LLKTFSG--HTDCVRGLAVLDDSHF-L 194 (745)
T ss_pred eeecCCC-cEEeccCcce-------------eeeccCCc--------------hhhhhcc--chhheeeeEEecCCCe-E
Confidence 9999999 5569999984 89996422 1123456 9999999999988766 5
Q ss_pred EEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEE-EecCCEEEEEEeCCcEEEEEecCCcc
Q 003087 246 TSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFA-WWSDNILILARKSSIITMIDVLSGLK 323 (849)
Q Consensus 246 s~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~va-ws~D~~la~a~~dgti~lwdl~~~~~ 323 (849)
|++.||.|++|++.++ + +...- +|.+-|++++ .-+|+-+++++.|++++||+.....+
T Consensus 195 ScsNDg~Ir~w~~~ge-~-l~~~~------------------ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~q 253 (745)
T KOG0301|consen 195 SCSNDGSIRLWDLDGE-V-LLEMH------------------GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDECVQ 253 (745)
T ss_pred eecCCceEEEEeccCc-e-eeeee------------------ccceEEEEEEecCCCCeEEEecCCceEEEeecCceEE
Confidence 7899999999999765 3 22221 3556688888 55677788999999999999874433
No 115
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.63 E-value=3.8e-15 Score=161.63 Aligned_cols=237 Identities=11% Similarity=0.092 Sum_probs=167.9
Q ss_pred cccceEEEEEcCCCCeEEEEeC-CeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCcc
Q 003087 9 KTKKQVSLFISPRGERVAVAAV-NQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEE 87 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~ 87 (849)
|-+.+.+..++|||+.|.+|+. .++.|||+..........++. ....--.+|.|||.++.-++..||+|+|||+..+.
T Consensus 464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaelts-sapaCyALa~spDakvcFsccsdGnI~vwDLhnq~ 542 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTS-SAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT 542 (705)
T ss_pred cccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCC-cchhhhhhhcCCccceeeeeccCCcEEEEEcccce
Confidence 4578899999999999999985 689999976432111111111 12334579999999999999999999999998654
Q ss_pred -ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEE
Q 003087 88 -ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT 166 (849)
Q Consensus 88 -~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv 166 (849)
+..+.+|. .-+.+|..++++...|++ +-|.+||.||+.++....-. .+...|.++
T Consensus 543 ~VrqfqGht----DGascIdis~dGtklWTG-------GlDntvRcWDlregrqlqqh-------------dF~SQIfSL 598 (705)
T KOG0639|consen 543 LVRQFQGHT----DGASCIDISKDGTKLWTG-------GLDNTVRCWDLREGRQLQQH-------------DFSSQIFSL 598 (705)
T ss_pred eeecccCCC----CCceeEEecCCCceeecC-------CCccceeehhhhhhhhhhhh-------------hhhhhheec
Confidence 44444443 346678889999888876 89999999999877653221 233459999
Q ss_pred EEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEE
Q 003087 167 DYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVAT 246 (849)
Q Consensus 167 afsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs 246 (849)
-|+|.|.+||+|-..+. |.+-...+....+ + ..|..-|-++.|++-|++.+|
T Consensus 599 g~cP~~dWlavGMens~-------------vevlh~skp~kyq-l--------------hlheScVLSlKFa~cGkwfvS 650 (705)
T KOG0639|consen 599 GYCPTGDWLAVGMENSN-------------VEVLHTSKPEKYQ-L--------------HLHESCVLSLKFAYCGKWFVS 650 (705)
T ss_pred ccCCCccceeeecccCc-------------EEEEecCCcccee-e--------------cccccEEEEEEecccCceeee
Confidence 99999999999866642 4333333321100 0 117788999999999999999
Q ss_pred EeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEE-EEEEeCCcEEEEEe
Q 003087 247 SDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNIL-ILARKSSIITMIDV 318 (849)
Q Consensus 247 ~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~l-a~a~~dgti~lwdl 318 (849)
.+.|.-+..|..+-+.. .|.. ++ ..+|.+.--|.|+++ ++|+.|...+||.+
T Consensus 651 tGkDnlLnawrtPyGas---iFqs----------------kE-~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 651 TGKDNLLNAWRTPYGAS---IFQS----------------KE-SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCchhhhhhccCccccc---eeec----------------cc-cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 99999999999987632 3321 11 134554444567764 56778888888865
No 116
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.62 E-value=7.3e-15 Score=159.50 Aligned_cols=247 Identities=12% Similarity=0.125 Sum_probs=181.0
Q ss_pred cceEEEEEcCCCCeEEEEeCCeEEEEecCCC-CCcceeeeeec-CCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccc
Q 003087 11 KKQVSLFISPRGERVAVAAVNQVTILQKDDD-YQEPCGIFNCT-GLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEI 88 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~~~i~iw~~~~~-~~~~~~~~~~~-~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~ 88 (849)
+.|.++++|...+.+-+|+-++|+||+.... ...|+..+... -...+++.-.+|||+.|.+|+.-.|+-|||+....
T Consensus 420 EvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapT- 498 (705)
T KOG0639|consen 420 EVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPT- 498 (705)
T ss_pred cEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCC-
Confidence 6788999999999999999999999997632 12233222211 14567999999999999999999999999997533
Q ss_pred eecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEE
Q 003087 89 TRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDY 168 (849)
Q Consensus 89 ~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svaf 168 (849)
.++.........+..+++.+||..+. +.+..||.|.+||+....... .|+ +|+.++.|+..
T Consensus 499 prikaeltssapaCyALa~spDakvc-------FsccsdGnI~vwDLhnq~~Vr-----------qfq-GhtDGascIdi 559 (705)
T KOG0639|consen 499 PRIKAELTSSAPACYALAISPDAKVC-------FSCCSDGNIAVWDLHNQTLVR-----------QFQ-GHTDGASCIDI 559 (705)
T ss_pred cchhhhcCCcchhhhhhhcCCcccee-------eeeccCCcEEEEEcccceeee-----------ccc-CCCCCceeEEe
Confidence 12221111111245678888877654 344799999999997544322 355 45778999999
Q ss_pred cCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEe
Q 003087 169 HPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSD 248 (849)
Q Consensus 169 sPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s 248 (849)
|+||..|=+||-|.| ||-||...+..+++ +. ....|+++..+|.|.+||.|-
T Consensus 560 s~dGtklWTGGlDnt-------------vRcWDlregrqlqq------------hd---F~SQIfSLg~cP~~dWlavGM 611 (705)
T KOG0639|consen 560 SKDGTKLWTGGLDNT-------------VRCWDLREGRQLQQ------------HD---FSSQIFSLGYCPTGDWLAVGM 611 (705)
T ss_pred cCCCceeecCCCccc-------------eeehhhhhhhhhhh------------hh---hhhhheecccCCCccceeeec
Confidence 999999999999974 89999887632221 00 134788999999999999999
Q ss_pred CCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecCCcccc
Q 003087 249 TNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVLSGLKVK 325 (849)
Q Consensus 249 ~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~~~l~ 325 (849)
.++.|-+-...+.. ++..+ .|..-|.++-|.+-|+ .++++.|+-+..|..+-|..++
T Consensus 612 ens~vevlh~skp~----kyqlh----------------lheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiF 669 (705)
T KOG0639|consen 612 ENSNVEVLHTSKPE----KYQLH----------------LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF 669 (705)
T ss_pred ccCcEEEEecCCcc----ceeec----------------ccccEEEEEEecccCceeeecCchhhhhhccCcccccee
Confidence 99988777666542 22211 1334578999999886 7889999999999999998665
No 117
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.62 E-value=3.5e-15 Score=166.75 Aligned_cols=220 Identities=15% Similarity=0.134 Sum_probs=156.4
Q ss_pred EEEEC-CCCCEEEEEeCCCcEEEEecC---Cc----cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcE
Q 003087 59 YGAWS-ESHDVLGIVDDTHTVYFFKAN---GE----EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFL 130 (849)
Q Consensus 59 ~vafS-PDG~~LAs~~~dgtIrlWd~~---g~----~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v 130 (849)
.+.-+ |.|++|-+||+||+|++|++. ++ .+..+. +| +.+|..++.--.+ +.|+++|.|-+|
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme-~H---sDWVNDiiL~~~~-------~tlIS~SsDtTV 97 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASME-HH---SDWVNDIILCGNG-------KTLISASSDTTV 97 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhh-hh---HhHHhhHHhhcCC-------CceEEecCCceE
Confidence 34444 567779999999999999985 21 122221 12 3455555532211 247888999999
Q ss_pred EEEEecCCC--CcccccccccCCcceeccccCCceEEEEE-cCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcC
Q 003087 131 HQIEISQDP--SASISSASASSSGLTLRRQFPQNVICTDY-HPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLE 207 (849)
Q Consensus 131 ~lw~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~V~svaf-sPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~ 207 (849)
++|+...+. +.+. + +.|+.-|.|++| -++..+.||||-|+. |.+||++.++.
T Consensus 98 K~W~~~~~~~~c~st-----------i-r~H~DYVkcla~~ak~~~lvaSgGLD~~-------------IflWDin~~~~ 152 (735)
T KOG0308|consen 98 KVWNAHKDNTFCMST-----------I-RTHKDYVKCLAYIAKNNELVASGGLDRK-------------IFLWDINTGTA 152 (735)
T ss_pred EEeecccCcchhHhh-----------h-hcccchheeeeecccCceeEEecCCCcc-------------EEEEEccCcch
Confidence 999987653 2222 2 366778999999 899999999999973 89999997632
Q ss_pred -----cccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCccccccccccccccccccccc
Q 003087 208 -----LEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSL 282 (849)
Q Consensus 208 -----~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l 282 (849)
...+... .+ ..| +..+|+++|-.|.|..+++||..+.|++||..+... +-++.
T Consensus 153 ~l~~s~n~~t~~---sl---~sG--~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~k-imkLr------------- 210 (735)
T KOG0308|consen 153 TLVASFNNVTVN---SL---GSG--PKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKK-IMKLR------------- 210 (735)
T ss_pred hhhhhccccccc---cC---CCC--CccceeeeecCCcceEEEecCcccceEEeccccccc-eeeee-------------
Confidence 1111110 11 115 778999999999999999999999999999998754 22222
Q ss_pred CCCCCCCCCCcEEEEEecCC-EEEEEEeCCcEEEEEecCCccccccCCCCCCeEEEEEecc
Q 003087 283 FDGRTKPISDITDFAWWSDN-ILILARKSSIITMIDVLSGLKVKETDPKLRGHVFLLESKS 342 (849)
Q Consensus 283 ~~~~~~~~~~v~~vaws~D~-~la~a~~dgti~lwdl~~~~~l~~~~~~~~g~~~~Le~~~ 342 (849)
+|...|..+--++|| ++++|+.||+|++||+...+.+.. -..|...+-+|.+.+
T Consensus 211 -----GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T-~~vH~e~VWaL~~~~ 265 (735)
T KOG0308|consen 211 -----GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLAT-YIVHKEGVWALQSSP 265 (735)
T ss_pred -----ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeee-EEeccCceEEEeeCC
Confidence 466778888889998 588999999999999987664432 335666688887763
No 118
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.62 E-value=3.3e-14 Score=144.62 Aligned_cols=214 Identities=13% Similarity=0.151 Sum_probs=158.5
Q ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEEec-CCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEE
Q 003087 54 LGASIYGAWSESHDVLGIVDDTHTVYFFKA-NGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQ 132 (849)
Q Consensus 54 ~~~v~~vafSPDG~~LAs~~~dgtIrlWd~-~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~l 132 (849)
.-+++.|.|+.||.+|-|++.|.++.||-. +|+.+-+..+|. .+|+++...-+.. ++.+.+.|.++++
T Consensus 10 ERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHt----GavW~~Did~~s~-------~liTGSAD~t~kL 78 (327)
T KOG0643|consen 10 ERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHT----GAVWCCDIDWDSK-------HLITGSADQTAKL 78 (327)
T ss_pred ccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCC----ceEEEEEecCCcc-------eeeeccccceeEE
Confidence 457899999999999999999999999976 799888887765 5799988644332 4666789999999
Q ss_pred EEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccce
Q 003087 133 IEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLY 212 (849)
Q Consensus 133 w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~ 212 (849)
||+.+|+....+. .+..|..+.|+++|.+++....+. ++. +|.|.+.|+..... .+.
T Consensus 79 WDv~tGk~la~~k-------------~~~~Vk~~~F~~~gn~~l~~tD~~------mg~--~~~v~~fdi~~~~~--~~~ 135 (327)
T KOG0643|consen 79 WDVETGKQLATWK-------------TNSPVKRVDFSFGGNLILASTDKQ------MGY--TCFVSVFDIRDDSS--DID 135 (327)
T ss_pred EEcCCCcEEEEee-------------cCCeeEEEeeccCCcEEEEEehhh------cCc--ceEEEEEEccCChh--hhc
Confidence 9999998754322 245799999999999886654443 123 35699999864310 110
Q ss_pred eccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCC
Q 003087 213 TTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISD 292 (849)
Q Consensus 213 ~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (849)
+ ...+.+..- +...+.++-|+|-|++|++++.||.|++||+.++...+..- ..|...
T Consensus 136 s---~ep~~kI~t--~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~------------------~~h~~~ 192 (327)
T KOG0643|consen 136 S---EEPYLKIPT--PDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSD------------------EEHSSK 192 (327)
T ss_pred c---cCceEEecC--CccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeech------------------hhhccc
Confidence 0 010111111 45688899999999999999999999999999874311111 134557
Q ss_pred cEEEEEecCCE-EEEEEeCCcEEEEEecCCccc
Q 003087 293 ITDFAWWSDNI-LILARKSSIITMIDVLSGLKV 324 (849)
Q Consensus 293 v~~vaws~D~~-la~a~~dgti~lwdl~~~~~l 324 (849)
|.++.+++|.. .++++.|.+-++||+.+.+.+
T Consensus 193 Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~ 225 (327)
T KOG0643|consen 193 INDLQFSRDRTYFITGSKDTTAKLVDVRTLEVL 225 (327)
T ss_pred cccccccCCcceEEecccCccceeeeccceeeE
Confidence 89999999986 578899999999999998743
No 119
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=6.3e-15 Score=174.27 Aligned_cols=250 Identities=14% Similarity=0.118 Sum_probs=174.3
Q ss_pred cceEEEEEcCCCCe----EEEEe-CCeEEEEecCCC----CCcceeeeeecCCCCEEEEEECCCCC-EEEEEeCCCcEEE
Q 003087 11 KKQVSLFISPRGER----VAVAA-VNQVTILQKDDD----YQEPCGIFNCTGLGASIYGAWSESHD-VLGIVDDTHTVYF 80 (849)
Q Consensus 11 ~~v~slafSPdG~~----LAsas-~~~i~iw~~~~~----~~~~~~~~~~~~~~~v~~vafSPDG~-~LAs~~~dgtIrl 80 (849)
.+-+.|+|++.|.. ||.|. ||.|.+|+.... .-..+.++ ..|++.|+.+.|+|.+. +||||++||.|-|
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~-~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATK-SKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhh-cccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 45688999999998 67665 689999986531 00111122 23578999999999887 9999999999999
Q ss_pred EecCCcc-ceecccccccccccEEEEEecC-CcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccc
Q 003087 81 FKANGEE-ITRFTNKHLKVSLPIIGLIAQD-ETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQ 158 (849)
Q Consensus 81 Wd~~g~~-~~~l~~~~~~~~~~V~~l~fs~-~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (849)
||++.-+ -++.. .......|..|+++- ... .|++++.+|.+.+||+...+. ++. ++..+.
T Consensus 144 WDlnn~~tP~~~~--~~~~~~eI~~lsWNrkvqh-------ILAS~s~sg~~~iWDlr~~~p--ii~-------ls~~~~ 205 (1049)
T KOG0307|consen 144 WDLNKPETPFTPG--SQAPPSEIKCLSWNRKVSH-------ILASGSPSGRAVIWDLRKKKP--IIK-------LSDTPG 205 (1049)
T ss_pred eccCCcCCCCCCC--CCCCcccceEeccchhhhH-------HhhccCCCCCceeccccCCCc--ccc-------cccCCC
Confidence 9997422 22221 111124577777654 222 245558999999999986532 222 111111
Q ss_pred cCCceEEEEEcCCCce-EEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEE
Q 003087 159 FPQNVICTDYHPELSL-LSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLI 237 (849)
Q Consensus 159 ~~~~V~svafsPdg~l-Las~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vaf 237 (849)
...++.++||||+.. |++++.|+ +.-+|.+||+.......+ .+.+ |+.+|-+|+|
T Consensus 206 -~~~~S~l~WhP~~aTql~~As~dd----------~~PviqlWDlR~assP~k-----------~~~~--H~~GilslsW 261 (1049)
T KOG0307|consen 206 -RMHCSVLAWHPDHATQLLVASGDD----------SAPVIQLWDLRFASSPLK-----------ILEG--HQRGILSLSW 261 (1049)
T ss_pred -ccceeeeeeCCCCceeeeeecCCC----------CCceeEeecccccCCchh-----------hhcc--cccceeeecc
Confidence 124899999999874 55666665 334699999754321111 1234 9999999999
Q ss_pred ccCC-CEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCC--EEEEEEeCCcEE
Q 003087 238 SPQG-KFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDN--ILILARKSSIIT 314 (849)
Q Consensus 238 SPDG-~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~--~la~a~~dgti~ 314 (849)
.|.+ .+|+|.+-|+.|-.|+..+++. +..++. ..+++.+|.|.|-. .+++++-||.|.
T Consensus 262 c~~D~~lllSsgkD~~ii~wN~~tgEv-l~~~p~------------------~~nW~fdv~w~pr~P~~~A~asfdgkI~ 322 (1049)
T KOG0307|consen 262 CPQDPRLLLSSGKDNRIICWNPNTGEV-LGELPA------------------QGNWCFDVQWCPRNPSVMAAASFDGKIS 322 (1049)
T ss_pred CCCCchhhhcccCCCCeeEecCCCceE-eeecCC------------------CCcceeeeeecCCCcchhhhheecccee
Confidence 9988 9999999999999999998754 445441 23679999999954 578899999999
Q ss_pred EEEecCCc
Q 003087 315 MIDVLSGL 322 (849)
Q Consensus 315 lwdl~~~~ 322 (849)
|+++.++.
T Consensus 323 I~sl~~~~ 330 (1049)
T KOG0307|consen 323 IYSLQGTD 330 (1049)
T ss_pred eeeeecCC
Confidence 99998765
No 120
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2.6e-13 Score=141.47 Aligned_cols=243 Identities=10% Similarity=0.077 Sum_probs=153.0
Q ss_pred ceEEEEEcCCCCeEEEEe---CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccc
Q 003087 12 KQVSLFISPRGERVAVAA---VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEI 88 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas---~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~ 88 (849)
.|..+.|......+..++ |++|+..++.+. +-+.-|. +|...|.+++-||-+....|++.|+|||+||+....+
T Consensus 58 G~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN--kylRYF~-GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~c 134 (311)
T KOG1446|consen 58 GVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN--KYLRYFP-GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKC 134 (311)
T ss_pred cccEEEEecCCceEEEccCCCCCceEEEEeecC--ceEEEcC-CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCC
Confidence 356666766666555554 679999988764 2233333 3467899999999999999999999999999985443
Q ss_pred eecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEE
Q 003087 89 TRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDY 168 (849)
Q Consensus 89 ~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svaf 168 (849)
..+..-.. .+| .||.|.+.. ||++...+.|+++|+..=...... .+.+.-.-....+.+.|
T Consensus 135 qg~l~~~~---~pi--~AfDp~GLi-------fA~~~~~~~IkLyD~Rs~dkgPF~-------tf~i~~~~~~ew~~l~F 195 (311)
T KOG1446|consen 135 QGLLNLSG---RPI--AAFDPEGLI-------FALANGSELIKLYDLRSFDKGPFT-------TFSITDNDEAEWTDLEF 195 (311)
T ss_pred ceEEecCC---Ccc--eeECCCCcE-------EEEecCCCeEEEEEecccCCCCce-------eEccCCCCccceeeeEE
Confidence 33322111 223 578887764 555566669999998642111110 01122111224899999
Q ss_pred cCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEe
Q 003087 169 HPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSD 248 (849)
Q Consensus 169 sPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s 248 (849)
||||+.|..+...+ .+.+-|...+.-. +.++.+.. ...---+..|+|||+++.+++
T Consensus 196 S~dGK~iLlsT~~s-------------~~~~lDAf~G~~~---------~tfs~~~~--~~~~~~~a~ftPds~Fvl~gs 251 (311)
T KOG1446|consen 196 SPDGKSILLSTNAS-------------FIYLLDAFDGTVK---------STFSGYPN--AGNLPLSATFTPDSKFVLSGS 251 (311)
T ss_pred cCCCCEEEEEeCCC-------------cEEEEEccCCcEe---------eeEeeccC--CCCcceeEEECCCCcEEEEec
Confidence 99999987765554 2666676655311 11111111 011113789999999999999
Q ss_pred CCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEec
Q 003087 249 TNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVL 319 (849)
Q Consensus 249 ~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~ 319 (849)
.||+|.+|++.++.. +..|.. .+..++..+.|.|--.+ .++.+..+..|=..
T Consensus 252 ~dg~i~vw~~~tg~~-v~~~~~-----------------~~~~~~~~~~fnP~~~m-f~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 252 DDGTIHVWNLETGKK-VAVLRG-----------------PNGGPVSCVRFNPRYAM-FVSASSNLVFWLPD 303 (311)
T ss_pred CCCcEEEEEcCCCcE-eeEecC-----------------CCCCCccccccCCceee-eeecCceEEEEecc
Confidence 999999999988743 334321 12345566778886543 44556677777543
No 121
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.1e-13 Score=160.43 Aligned_cols=222 Identities=14% Similarity=0.155 Sum_probs=153.5
Q ss_pred EEEEEcCCCCeEEEEe-CCeEEEEecCCC-CCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Ccccee
Q 003087 14 VSLFISPRGERVAVAA-VNQVTILQKDDD-YQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEITR 90 (849)
Q Consensus 14 ~slafSPdG~~LAsas-~~~i~iw~~~~~-~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~~~ 90 (849)
...+++-++.++++++ +++|.+...... .+..+.+++ -+++.++|+-+|+++|.||+|-.|+|-+.+ +.....
T Consensus 58 ~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rft----lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~ 133 (933)
T KOG1274|consen 58 LVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFT----LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKV 133 (933)
T ss_pred eeEEEeecccceEEeeccceEEEeeCCCCCccceeeeee----ccceEEEEecCCcEEEeecCceeEEEEeccccchhee
Confidence 3445556777888888 578888865432 222333333 468999999999999999999999999986 444445
Q ss_pred cccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcC
Q 003087 91 FTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHP 170 (849)
Q Consensus 91 l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsP 170 (849)
+.+|. .+|.+|.|.|.+.. +++.+.||.|++|++..+.+..++... ...+.-.....+..++|||
T Consensus 134 lrgh~----apVl~l~~~p~~~f-------LAvss~dG~v~iw~~~~~~~~~tl~~v----~k~n~~~~s~i~~~~aW~P 198 (933)
T KOG1274|consen 134 LRGHD----APVLQLSYDPKGNF-------LAVSSCDGKVQIWDLQDGILSKTLTGV----DKDNEFILSRICTRLAWHP 198 (933)
T ss_pred ecccC----CceeeeeEcCCCCE-------EEEEecCceEEEEEcccchhhhhcccC----CccccccccceeeeeeecC
Confidence 44433 57999999997654 455689999999999987664443311 1111101123578999999
Q ss_pred CCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCC
Q 003087 171 ELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTN 250 (849)
Q Consensus 171 dg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~D 250 (849)
+|..||+.+.+++ |++++..+.. ..+. + ..+. |...+..++|||.|++||+++.|
T Consensus 199 k~g~la~~~~d~~-------------Vkvy~r~~we---~~f~------L-r~~~--~ss~~~~~~wsPnG~YiAAs~~~ 253 (933)
T KOG1274|consen 199 KGGTLAVPPVDNT-------------VKVYSRKGWE---LQFK------L-RDKL--SSSKFSDLQWSPNGKYIAASTLD 253 (933)
T ss_pred CCCeEEeeccCCe-------------EEEEccCCce---ehee------e-cccc--cccceEEEEEcCCCcEEeeeccC
Confidence 9887888888874 7888877631 1111 1 0111 33448899999999999999999
Q ss_pred CcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCC
Q 003087 251 GCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDN 302 (849)
Q Consensus 251 gtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~ 302 (849)
|.|-|||+++-. . .+....|+..+|-|+.
T Consensus 254 g~I~vWnv~t~~----~-------------------~~~~~~Vc~~aw~p~~ 282 (933)
T KOG1274|consen 254 GQILVWNVDTHE----R-------------------HEFKRAVCCEAWKPNA 282 (933)
T ss_pred CcEEEEecccch----h-------------------ccccceeEEEecCCCC
Confidence 999999998521 0 0223568889998875
No 122
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=5.6e-14 Score=145.66 Aligned_cols=254 Identities=16% Similarity=0.154 Sum_probs=165.5
Q ss_pred eEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Ccccee
Q 003087 13 QVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEITR 90 (849)
Q Consensus 13 v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~~~ 90 (849)
..++.|||.|.+||+|. +|.|.|||..+- . +++....|.-+|++++|||||+.|.++|.|..|.+||+. |..+.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~--~-iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF--R-IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcccc--c-hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence 57899999999999997 789999997641 1 222112235579999999999999999999999999986 766554
Q ss_pred cccccccccccEEEE----------------------EecC----------Cccc--ccc---cc---eeEEEEeCCCcE
Q 003087 91 FTNKHLKVSLPIIGL----------------------IAQD----------ETDV--QRS---CL---CSFTVFTSDGFL 130 (849)
Q Consensus 91 l~~~~~~~~~~V~~l----------------------~fs~----------~~~~--~~s---~~---~~~~~~s~Dg~v 130 (849)
+. ++++|++. .|+| ++.. .++ ++ +++++++..|-+
T Consensus 103 ir-----f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkl 177 (405)
T KOG1273|consen 103 IR-----FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKL 177 (405)
T ss_pred EE-----ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceE
Confidence 42 12233322 2331 1211 122 11 357777888889
Q ss_pred EEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCc----
Q 003087 131 HQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNL---- 206 (849)
Q Consensus 131 ~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~---- 206 (849)
.+++..+-++...+. .. ....|..+.|+-.|+.|+.-..|+ +||.++...-.
T Consensus 178 lv~~a~t~e~vas~r---------it--s~~~IK~I~~s~~g~~liiNtsDR-------------vIR~ye~~di~~~~r 233 (405)
T KOG1273|consen 178 LVYDAETLECVASFR---------IT--SVQAIKQIIVSRKGRFLIINTSDR-------------VIRTYEISDIDDEGR 233 (405)
T ss_pred EEEecchheeeeeee---------ec--hheeeeEEEEeccCcEEEEecCCc-------------eEEEEehhhhcccCc
Confidence 999887765543221 11 124699999999999999888886 48888765311
Q ss_pred C--cccceeccccceeeccCCCccccccceEEEccCCCEEEEEeC-CCcEEEEecCCCcccccccccccccccccccccC
Q 003087 207 E--LEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDT-NGCLYIFEMDKDNFSLSKFACGERFDLQVADSLF 283 (849)
Q Consensus 207 ~--~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~-Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~ 283 (849)
+ .++.-..| .+. ....=.++.||-||.++..++. -..++||.-..+.. ++.+-..
T Consensus 234 ~~e~e~~~K~q--DvV-------Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsL-VKILhG~------------ 291 (405)
T KOG1273|consen 234 DGEVEPEHKLQ--DVV-------NKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSL-VKILHGT------------ 291 (405)
T ss_pred cCCcChhHHHH--HHH-------hhhhhhheeecCCccEEEeccccceeEEEEecCCcce-eeeecCC------------
Confidence 1 11100000 000 1112347899999999887764 56899999988754 4443210
Q ss_pred CCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecCCcccc
Q 003087 284 DGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSGLKVK 325 (849)
Q Consensus 284 ~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~~~~l~ 325 (849)
+| ....+|.|.|=.-++..-..|++.||......+-+
T Consensus 292 --kg---E~l~DV~whp~rp~i~si~sg~v~iw~~~~~enws 328 (405)
T KOG1273|consen 292 --KG---EELLDVNWHPVRPIIASIASGVVYIWAVVQVENWS 328 (405)
T ss_pred --ch---hheeecccccceeeeeeccCCceEEEEeecccchh
Confidence 01 23578999886554444489999999998776544
No 123
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.59 E-value=6.7e-13 Score=147.21 Aligned_cols=259 Identities=15% Similarity=0.128 Sum_probs=151.9
Q ss_pred cceEEEEEcCCCCeEEEEe--CCeEEEEecCCCCCcc--eeeeeecCCCCEEEEEECCCCCEEEEEeC-CCcEEEEecC-
Q 003087 11 KKQVSLFISPRGERVAVAA--VNQVTILQKDDDYQEP--CGIFNCTGLGASIYGAWSESHDVLGIVDD-THTVYFFKAN- 84 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas--~~~i~iw~~~~~~~~~--~~~~~~~~~~~v~~vafSPDG~~LAs~~~-dgtIrlWd~~- 84 (849)
+.+..++|||||++|++++ ++.|.+|+..++ +.. ..... ..+....++|+|||++|.+++. ++.|.+|+++
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~-g~l~~~~~~~--~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADD-GALTFAAESP--LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCC-CceEEeeeec--CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECC
Confidence 4567899999999998775 478888987522 221 11111 1234578999999999998764 8899999985
Q ss_pred -CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCce
Q 003087 85 -GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNV 163 (849)
Q Consensus 85 -g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V 163 (849)
|.....+.. ........+++|+|++... +++...++.|.+|++.+.+...... ....+.. ...+.
T Consensus 112 ~g~~~~~~~~--~~~~~~~~~~~~~p~g~~l------~v~~~~~~~v~v~d~~~~g~l~~~~----~~~~~~~--~g~~p 177 (330)
T PRK11028 112 DGIPVAPIQI--IEGLEGCHSANIDPDNRTL------WVPCLKEDRIRLFTLSDDGHLVAQE----PAEVTTV--EGAGP 177 (330)
T ss_pred CCCCCCceee--ccCCCcccEeEeCCCCCEE------EEeeCCCCEEEEEEECCCCcccccC----CCceecC--CCCCC
Confidence 322111110 0001234567888865321 2233467999999997643221000 0000111 11246
Q ss_pred EEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCc-CcccceeccccceeeccCCCccccccceEEEccCCC
Q 003087 164 ICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNL-ELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGK 242 (849)
Q Consensus 164 ~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~-~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~ 242 (849)
..++|+|||++++++...+ + .|.+|+++... .++.+... +.+ +.+..+......+.|+|||+
T Consensus 178 ~~~~~~pdg~~lyv~~~~~----------~--~v~v~~~~~~~~~~~~~~~~---~~~--p~~~~~~~~~~~i~~~pdg~ 240 (330)
T PRK11028 178 RHMVFHPNQQYAYCVNELN----------S--SVDVWQLKDPHGEIECVQTL---DMM--PADFSDTRWAADIHITPDGR 240 (330)
T ss_pred ceEEECCCCCEEEEEecCC----------C--EEEEEEEeCCCCCEEEEEEE---ecC--CCcCCCCccceeEEECCCCC
Confidence 7899999999998875532 1 48999997421 11111110 000 11000112334699999999
Q ss_pred EEEEEe-CCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEE-eCCcEEEEEec
Q 003087 243 FVATSD-TNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILAR-KSSIITMIDVL 319 (849)
Q Consensus 243 ~LAs~s-~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~-~dgti~lwdl~ 319 (849)
+|+++. .+++|.+|++......+ ++... +.. ...+..++|+|||+ |+++. .+|+|.+|++.
T Consensus 241 ~lyv~~~~~~~I~v~~i~~~~~~~-~~~~~----------~~~-----~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 241 HLYACDRTASLISVFSVSEDGSVL-SFEGH----------QPT-----ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEEecCCCCeEEEEEEeCCCCeE-EEeEE----------Eec-----cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 999986 47999999996542111 11110 000 02345789999996 55554 48999999885
No 124
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.58 E-value=1.3e-13 Score=141.68 Aligned_cols=221 Identities=13% Similarity=0.144 Sum_probs=148.4
Q ss_pred cccceEEEEEcC-CCCeEEEEe-CCeEEEEecCCCCCc----cee--eee---e--c-CCCCEEEEEECC-CCCEEEEEe
Q 003087 9 KTKKQVSLFISP-RGERVAVAA-VNQVTILQKDDDYQE----PCG--IFN---C--T-GLGASIYGAWSE-SHDVLGIVD 73 (849)
Q Consensus 9 ~~~~v~slafSP-dG~~LAsas-~~~i~iw~~~~~~~~----~~~--~~~---~--~-~~~~v~~vafSP-DG~~LAs~~ 73 (849)
+++.|++|.+.| .|+|+.+|+ |+.|.+||+....+. .+. .|. . . |.-.|.++-|=| |..+..+++
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssS 121 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSS 121 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccc
Confidence 448899999988 588999986 789999997643211 111 111 1 1 133678899988 778888999
Q ss_pred CCCcEEEEecCCcc-ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCc
Q 003087 74 DTHTVYFFKANGEE-ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSG 152 (849)
Q Consensus 74 ~dgtIrlWd~~g~~-~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~ 152 (849)
-|.|++|||++.-+ ...+ +....|.+-+.||- +..-|-+++++.|-.||+.|+..|.....
T Consensus 122 FDhtlKVWDtnTlQ~a~~F-----~me~~VYshamSp~----a~sHcLiA~gtr~~~VrLCDi~SGs~sH~--------- 183 (397)
T KOG4283|consen 122 FDHTLKVWDTNTLQEAVDF-----KMEGKVYSHAMSPM----AMSHCLIAAGTRDVQVRLCDIASGSFSHT--------- 183 (397)
T ss_pred ccceEEEeecccceeeEEe-----ecCceeehhhcChh----hhcceEEEEecCCCcEEEEeccCCcceee---------
Confidence 99999999997533 2222 11234555555551 11123467778889999999988776332
Q ss_pred ceeccccCCceEEEEEcCCCce-EEEEecCCCCccccCCCCCCceeeEEEecCC-cCcccc-----eeccccceeeccCC
Q 003087 153 LTLRRQFPQNVICTDYHPELSL-LSVVSNTDTSSLTSSGNSGPCCISLWRRCHN-LELEQL-----YTTQIEGLYCEPKG 225 (849)
Q Consensus 153 ~~l~~~~~~~V~svafsPdg~l-Las~g~d~t~~~~~~~~~G~~~I~lW~~~~~-~~~~~l-----~~~~~~~~~~~~~g 225 (849)
|+| |..+|.+|.|||...+ ||+||.|++ |++||+.-- ..+..+ .-++ .+.....
T Consensus 184 --LsG-Hr~~vlaV~Wsp~~e~vLatgsaDg~-------------irlWDiRrasgcf~~lD~hn~k~~p---~~~~n~a 244 (397)
T KOG4283|consen 184 --LSG-HRDGVLAVEWSPSSEWVLATGSADGA-------------IRLWDIRRASGCFRVLDQHNTKRPP---ILKTNTA 244 (397)
T ss_pred --ecc-ccCceEEEEeccCceeEEEecCCCce-------------EEEEEeecccceeEEeecccCccCc---ccccccc
Confidence 454 5678999999999885 688888875 677776421 000000 0000 0001112
Q ss_pred CccccccceEEEccCCCEEEEEeCCCcEEEEecCCCccccccc
Q 003087 226 HEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKF 268 (849)
Q Consensus 226 ~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~ 268 (849)
|.+.|+.++|+.||.+|++.+.|..+++|+..+++-.++.+
T Consensus 245 --h~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~ 285 (397)
T KOG4283|consen 245 --HYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREF 285 (397)
T ss_pred --ccceeeeeeecccchhhhhccCccceEEeecccCccccccc
Confidence 77899999999999999999999999999999886544444
No 125
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.58 E-value=1.9e-13 Score=154.05 Aligned_cols=272 Identities=16% Similarity=0.198 Sum_probs=171.4
Q ss_pred ccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeee----e---cC-CCCEEEEEECCCCCEEEEEeCCCcE
Q 003087 8 RKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFN----C---TG-LGASIYGAWSESHDVLGIVDDTHTV 78 (849)
Q Consensus 8 ~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~----~---~~-~~~v~~vafSPDG~~LAs~~~dgtI 78 (849)
.+.++|++|-|+|.|..|-++| |+++.||..+... |.+. . .| ...+...-|||++..+.+-+..|..
T Consensus 265 GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~t----GiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 265 GHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENT----GIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred CcccceEEEEEccchhhheecccCcceEEEecCCcc----ceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence 4668999999999996666666 8899999865432 3332 1 12 4568899999999999999999999
Q ss_pred EEEecCCccceecccccccccccEEEEEecCCccc--cccc-------------------------------------ce
Q 003087 79 YFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDV--QRSC-------------------------------------LC 119 (849)
Q Consensus 79 rlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~--~~s~-------------------------------------~~ 119 (849)
|+|....+...+..+...++...|.+|++.|.+.. +.+. +-
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~ 420 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL 420 (764)
T ss_pred EEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence 99984332212222222222345777777653211 0000 11
Q ss_pred eEEEEeCCCcEEEEEecCC---------------C-------Cccccc---ccc--------------------------
Q 003087 120 SFTVFTSDGFLHQIEISQD---------------P-------SASISS---ASA-------------------------- 148 (849)
Q Consensus 120 ~~~~~s~Dg~v~lw~~~~~---------------~-------~~~~~~---~~~-------------------------- 148 (849)
+|.++.....+|+++.... . ..+.+. +.+
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 2233223333455543210 0 000000 000
Q ss_pred cCCc--------------ceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceec
Q 003087 149 SSSG--------------LTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTT 214 (849)
Q Consensus 149 ~~~~--------------~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~ 214 (849)
...+ .+|-| |...|++++-||+|+++||+-...+ +-+ -.|++|...+-...+
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYG-HGyEv~~l~~s~~gnliASaCKS~~-~eh-------AvI~lw~t~~W~~~~----- 566 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYG-HGYEVYALAISPTGNLIASACKSSL-KEH-------AVIRLWNTANWLQVQ----- 566 (764)
T ss_pred cCCChHHHHHHhccchhhHHhcc-CceeEEEEEecCCCCEEeehhhhCC-ccc-------eEEEEEeccchhhhh-----
Confidence 0000 01222 2346999999999999998754442 212 258999876532111
Q ss_pred cccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcE
Q 003087 215 QIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDIT 294 (849)
Q Consensus 215 ~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~ 294 (849)
...+ |+..|..++|||||++|++++.|.+++||........-..|. . .+.|...|+
T Consensus 567 -------~L~~--HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa--------------~-~k~HtRIIW 622 (764)
T KOG1063|consen 567 -------ELEG--HSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFA--------------C-LKAHTRIIW 622 (764)
T ss_pred -------eecc--cceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhc--------------c-ccccceEEE
Confidence 1234 999999999999999999999999999998864411000111 1 145777899
Q ss_pred EEEEecCCE-EEEEEeCCcEEEEEecCC
Q 003087 295 DFAWWSDNI-LILARKSSIITMIDVLSG 321 (849)
Q Consensus 295 ~vaws~D~~-la~a~~dgti~lwdl~~~ 321 (849)
+..|+||+. .+++++|.+|+||..+.+
T Consensus 623 dcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 623 DCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred EcccCcccceeEEecCCceEEEEeccCc
Confidence 999999987 899999999999999988
No 126
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.58 E-value=4.9e-14 Score=152.68 Aligned_cols=213 Identities=12% Similarity=0.173 Sum_probs=146.9
Q ss_pred eEEEEEcCCCC-eEEEEe-CCeEEEEecCCCCC-----cceeeeeecCCCCEEEEEECC-CCCEEEEEeCCCcEEEEecC
Q 003087 13 QVSLFISPRGE-RVAVAA-VNQVTILQKDDDYQ-----EPCGIFNCTGLGASIYGAWSE-SHDVLGIVDDTHTVYFFKAN 84 (849)
Q Consensus 13 v~slafSPdG~-~LAsas-~~~i~iw~~~~~~~-----~~~~~~~~~~~~~v~~vafSP-DG~~LAs~~~dgtIrlWd~~ 84 (849)
-++|+|++.-+ +|++|+ |++|.+|+...... .+...+. .+.+.|..|+|+| +-.+++++++|+.+.|||+.
T Consensus 180 g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~-~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R 258 (422)
T KOG0264|consen 180 GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFS-GHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTR 258 (422)
T ss_pred ccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEee-cCCcceehhhccccchhhheeecCCCeEEEEEcC
Confidence 56788888765 555665 67999999764321 1222222 2367789999999 55778899999999999987
Q ss_pred C--ccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCc
Q 003087 85 G--EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQN 162 (849)
Q Consensus 85 g--~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 162 (849)
. .+...... .+...|++++|+|-.. ..||++|.|++|.+||+..-.. .. -+|. +|...
T Consensus 259 ~~~~~~~~~~~---ah~~~vn~~~fnp~~~------~ilAT~S~D~tV~LwDlRnL~~-~l---------h~~e-~H~de 318 (422)
T KOG0264|consen 259 SNTSKPSHSVK---AHSAEVNCVAFNPFNE------FILATGSADKTVALWDLRNLNK-PL---------HTFE-GHEDE 318 (422)
T ss_pred CCCCCCccccc---ccCCceeEEEeCCCCC------ceEEeccCCCcEEEeechhccc-Cc---------eecc-CCCcc
Confidence 3 22222212 2346899999998321 2367779999999999975322 11 1344 44667
Q ss_pred eEEEEEcCCCc-eEEEEecCCCCccccCCCCCCceeeEEEecCCcCccc--ceeccccceeeccCCCccccccceEEEcc
Q 003087 163 VICTDYHPELS-LLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQ--LYTTQIEGLYCEPKGHEVQLAHPKVLISP 239 (849)
Q Consensus 163 V~svafsPdg~-lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~--l~~~~~~~~~~~~~g~~h~~~V~~vafSP 239 (849)
|.+|.|||+.. .|||+|.|+. +.+||+..-..-+. -..-....++..|+| |...|..++|.|
T Consensus 319 v~~V~WSPh~etvLASSg~D~r-------------l~vWDls~ig~eq~~eda~dgppEllF~HgG--H~~kV~DfsWnp 383 (422)
T KOG0264|consen 319 VFQVEWSPHNETVLASSGTDRR-------------LNVWDLSRIGEEQSPEDAEDGPPELLFIHGG--HTAKVSDFSWNP 383 (422)
T ss_pred eEEEEeCCCCCceeEecccCCc-------------EEEEeccccccccChhhhccCCcceeEEecC--cccccccccCCC
Confidence 99999999866 5688887863 78899864211110 010011245567889 999999999999
Q ss_pred CCCE-EEEEeCCCcEEEEecCCC
Q 003087 240 QGKF-VATSDTNGCLYIFEMDKD 261 (849)
Q Consensus 240 DG~~-LAs~s~Dgtv~LWd~~~~ 261 (849)
.--+ ++|++.|+.++||+....
T Consensus 384 ~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 384 NEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred CCCeEEEEecCCceEEEeecccc
Confidence 8765 889999999999999853
No 127
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.58 E-value=6.8e-14 Score=148.12 Aligned_cols=255 Identities=15% Similarity=0.195 Sum_probs=161.2
Q ss_pred cccccceEEEEEcCCCCeEEEE--eC-CeEEEEecCCCC--------------CcceeeeeecC-CCCEEEEEECC--CC
Q 003087 7 PRKTKKQVSLFISPRGERVAVA--AV-NQVTILQKDDDY--------------QEPCGIFNCTG-LGASIYGAWSE--SH 66 (849)
Q Consensus 7 ~~~~~~v~slafSPdG~~LAsa--s~-~~i~iw~~~~~~--------------~~~~~~~~~~~-~~~v~~vafSP--DG 66 (849)
+.+++.++-+.-+|-|+-...| ++ |.|.||+..... ..|+ ++..+ ...=-.+.||| .|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl--~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPL--FTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCce--EEecccCccceeeeccccccc
Confidence 5577788888888877544334 54 799999965311 1111 22222 22336899999 34
Q ss_pred CEEEEEeCCCcEEEEecC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCccccc
Q 003087 67 DVLGIVDDTHTVYFFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISS 145 (849)
Q Consensus 67 ~~LAs~~~dgtIrlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~ 145 (849)
. |+||+--+.|++|... |.=...- .....+..+|-.|.+||.-. +-|++||-||+|++||+..++....
T Consensus 226 ~-LlsGDc~~~I~lw~~~~g~W~vd~-~Pf~gH~~SVEDLqWSptE~------~vfaScS~DgsIrIWDiRs~~~~~~-- 295 (440)
T KOG0302|consen 226 R-LLSGDCVKGIHLWEPSTGSWKVDQ-RPFTGHTKSVEDLQWSPTED------GVFASCSCDGSIRIWDIRSGPKKAA-- 295 (440)
T ss_pred c-cccCccccceEeeeeccCceeecC-ccccccccchhhhccCCccC------ceEEeeecCceEEEEEecCCCccce--
Confidence 3 7788888999999875 4311111 11122346788888887322 2378889999999999988754322
Q ss_pred ccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCC
Q 003087 146 ASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKG 225 (849)
Q Consensus 146 ~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g 225 (849)
.... .|...|+-|.|+-+-.+||+|+.++| +++||+..-...+++.. | +.
T Consensus 296 -------~~~k-Ah~sDVNVISWnr~~~lLasG~DdGt-------------~~iwDLR~~~~~~pVA~------f---k~ 345 (440)
T KOG0302|consen 296 -------VSTK-AHNSDVNVISWNRREPLLASGGDDGT-------------LSIWDLRQFKSGQPVAT------F---KY 345 (440)
T ss_pred -------eEee-ccCCceeeEEccCCcceeeecCCCce-------------EEEEEhhhccCCCccee------E---Ee
Confidence 1223 45567999999999999999988864 89999876432233322 2 22
Q ss_pred CccccccceEEEccC-CCEEEEEeCCCcEEEEecCCCcc--cccccccccccccccccccCCC---CCCCCCCcEEEEEe
Q 003087 226 HEVQLAHPKVLISPQ-GKFVATSDTNGCLYIFEMDKDNF--SLSKFACGERFDLQVADSLFDG---RTKPISDITDFAWW 299 (849)
Q Consensus 226 ~~h~~~V~~vafSPD-G~~LAs~s~Dgtv~LWd~~~~~~--~l~~~~~~~~~~~~~~~~l~~~---~~~~~~~v~~vaws 299 (849)
|..+|.+|.|+|. ...+|++|.|..|.|||+.-... ...+....+ -..+.|- .......+.++.|.
T Consensus 346 --Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~------L~dlPpQLLFVHqGQke~KevhWH 417 (440)
T KOG0302|consen 346 --HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEG------LQDLPPQLLFVHQGQKEVKEVHWH 417 (440)
T ss_pred --ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccc------hhcCCceeEEEecchhHhhhheec
Confidence 7789999999985 56688889999999999975421 000111000 0001110 00112347789998
Q ss_pred cC--CEEEEEEeCC
Q 003087 300 SD--NILILARKSS 311 (849)
Q Consensus 300 ~D--~~la~a~~dg 311 (849)
++ |.+++++.||
T Consensus 418 ~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 418 RQIPGLLVSTAIDG 431 (440)
T ss_pred cCCCCeEEEecccc
Confidence 86 5677888887
No 128
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.57 E-value=4.2e-14 Score=145.33 Aligned_cols=219 Identities=14% Similarity=0.136 Sum_probs=146.7
Q ss_pred CCEEEEEECC-CCCEEEEEeCCCcEEEEecCCc---ccee-c--------ccccccccccEEEEEecC-Cccccccccee
Q 003087 55 GASIYGAWSE-SHDVLGIVDDTHTVYFFKANGE---EITR-F--------TNKHLKVSLPIIGLIAQD-ETDVQRSCLCS 120 (849)
Q Consensus 55 ~~v~~vafSP-DG~~LAs~~~dgtIrlWd~~g~---~~~~-l--------~~~~~~~~~~V~~l~fs~-~~~~~~s~~~~ 120 (849)
+.|+++..-| .|+++.||+.||.|-|||+... +-.- + ..|...+-..|.++.+=| |. +.
T Consensus 44 GsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt-------Gm 116 (397)
T KOG4283|consen 44 GSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT-------GM 116 (397)
T ss_pred CccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC-------ce
Confidence 4555555554 6999999999999999998631 1000 0 111122334566666644 21 13
Q ss_pred EEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcC---CCceEEEEecCCCCccccCCCCCCcee
Q 003087 121 FTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHP---ELSLLSVVSNTDTSSLTSSGNSGPCCI 197 (849)
Q Consensus 121 ~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsP---dg~lLas~g~d~t~~~~~~~~~G~~~I 197 (849)
|.+.+.|.++++||..+-+..-. |++ +.-|++-++|| .++++|+|-.+- .|
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~~---------F~m----e~~VYshamSp~a~sHcLiA~gtr~~-------------~V 170 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAVD---------FKM----EGKVYSHAMSPMAMSHCLIAAGTRDV-------------QV 170 (397)
T ss_pred eecccccceEEEeecccceeeEE---------eec----CceeehhhcChhhhcceEEEEecCCC-------------cE
Confidence 56668999999999886443222 222 23588889998 467887765543 38
Q ss_pred eEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCE-EEEEeCCCcEEEEecCCC-cccccccccccccc
Q 003087 198 SLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKF-VATSDTNGCLYIFEMDKD-NFSLSKFACGERFD 275 (849)
Q Consensus 198 ~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~-LAs~s~Dgtv~LWd~~~~-~~~l~~~~~~~~~~ 275 (849)
+|-|+.++. +.. ...| |.++|.+|.|||-..+ |||||.||+|++||+... .| +..+..+.. .
T Consensus 171 rLCDi~SGs---------~sH---~LsG--Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgc-f~~lD~hn~-k 234 (397)
T KOG4283|consen 171 RLCDIASGS---------FSH---TLSG--HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGC-FRVLDQHNT-K 234 (397)
T ss_pred EEEeccCCc---------cee---eecc--ccCceEEEEeccCceeEEEecCCCceEEEEEeecccce-eEEeecccC-c
Confidence 999988752 111 2345 8899999999999887 899999999999999854 22 223221110 1
Q ss_pred cccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecCCcccc
Q 003087 276 LQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVLSGLKVK 325 (849)
Q Consensus 276 ~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~~~l~ 325 (849)
. .++...+..|.+.|...+|.+|+. +++.+.|..+++|+...|++.+
T Consensus 235 ~---~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl 282 (397)
T KOG4283|consen 235 R---PPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTL 282 (397)
T ss_pred c---CccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccc
Confidence 1 111111235777899999999996 7788999999999999998654
No 129
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=4.4e-13 Score=139.18 Aligned_cols=235 Identities=15% Similarity=0.104 Sum_probs=156.6
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccce
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEIT 89 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~ 89 (849)
+.|.+|.|||.++.|.++| |+++++++.... ...+.+. +..++.+-+|-++ ..+++|+.||.||+.|+++..-.
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~--~l~~~~~--~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN--SLKLKFK--HGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccch--hhhhhee--cCCceeeeeccCC-ceEEEeccCceEEEEEecCCcce
Confidence 4699999999999888887 899999997643 2333333 4568999999974 56889999999999999865544
Q ss_pred ecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEc
Q 003087 90 RFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYH 169 (849)
Q Consensus 90 ~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafs 169 (849)
.+..| ..+|.+|.+.+.. +.+.++|-|++|++||.........+. .+..|+|+..+
T Consensus 89 ~igth----~~~i~ci~~~~~~-------~~vIsgsWD~~ik~wD~R~~~~~~~~d-------------~~kkVy~~~v~ 144 (323)
T KOG1036|consen 89 QIGTH----DEGIRCIEYSYEV-------GCVISGSWDKTIKFWDPRNKVVVGTFD-------------QGKKVYCMDVS 144 (323)
T ss_pred eeccC----CCceEEEEeeccC-------CeEEEcccCccEEEEeccccccccccc-------------cCceEEEEecc
Confidence 55333 2578888887511 135556889999999987522211111 12358888876
Q ss_pred CCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCccc------------c---------eeccccce---------
Q 003087 170 PELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQ------------L---------YTTQIEGL--------- 219 (849)
Q Consensus 170 Pdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~------------l---------~~~~~~~~--------- 219 (849)
|..|++|..+. .|-+||+.......+ + +....+|-
T Consensus 145 --g~~LvVg~~~r-------------~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s 209 (323)
T KOG1036|consen 145 --GNRLVVGTSDR-------------KVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDS 209 (323)
T ss_pred --CCEEEEeecCc-------------eEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCc
Confidence 66777777775 266777644211000 0 00001110
Q ss_pred ---------eecc----CCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCC
Q 003087 220 ---------YCEP----KGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGR 286 (849)
Q Consensus 220 ---------~~~~----~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~ 286 (849)
|..| ++..-.-+|++|+|+|--+++||||.||.|.+||+.+.+. +.++.
T Consensus 210 ~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKr-l~q~~----------------- 271 (323)
T KOG1036|consen 210 EEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKR-LKQLA----------------- 271 (323)
T ss_pred hHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhh-hhhcc-----------------
Confidence 0111 1111224799999999999999999999999999998755 55543
Q ss_pred CCCCCCcEEEEEecCCE-EEEEE
Q 003087 287 TKPISDITDFAWWSDNI-LILAR 308 (849)
Q Consensus 287 ~~~~~~v~~vaws~D~~-la~a~ 308 (849)
+....|.+++|+.||. ||+|+
T Consensus 272 -~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 272 -KYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred -CCCCceEEEEeccCCCeEEEEe
Confidence 2235689999999985 66665
No 130
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=1.5e-13 Score=154.70 Aligned_cols=229 Identities=10% Similarity=0.120 Sum_probs=158.1
Q ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEEecCCcc--ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEE
Q 003087 54 LGASIYGAWSESHDVLGIVDDTHTVYFFKANGEE--ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLH 131 (849)
Q Consensus 54 ~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~--~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~ 131 (849)
...|+++|||-+.+.||.+..||+|-+|++...- ...+.+ ..+..|-+++|.+++ ++++.+.+|.|.
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g---~~drsIE~L~W~e~~--------RLFS~g~sg~i~ 93 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG---PEDRSIESLAWAEGG--------RLFSSGLSGSIT 93 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEec---CCCCceeeEEEccCC--------eEEeecCCceEE
Confidence 4579999999999999999999999999997432 223332 335789999987532 477779999999
Q ss_pred EEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccc
Q 003087 132 QIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQL 211 (849)
Q Consensus 132 lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l 211 (849)
-||+-+++....+. -..+.|++++-+|.+..+++|..|+ .+ .+...+++ .|
T Consensus 94 EwDl~~lk~~~~~d------------~~gg~IWsiai~p~~~~l~IgcddG-------------vl--~~~s~~p~--~I 144 (691)
T KOG2048|consen 94 EWDLHTLKQKYNID------------SNGGAIWSIAINPENTILAIGCDDG-------------VL--YDFSIGPD--KI 144 (691)
T ss_pred EEecccCceeEEec------------CCCcceeEEEeCCccceEEeecCCc-------------eE--EEEecCCc--eE
Confidence 99998766532222 1124699999999999998765553 13 33333321 11
Q ss_pred eeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCC
Q 003087 212 YTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPIS 291 (849)
Q Consensus 212 ~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (849)
. ....+.+ ..+.|.+|+|+|+|..||+|+.||.|++||+.++.. +...+ .|.+ -++ +....
T Consensus 145 ~---~~r~l~r-----q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t-~~~~~--~~~d-----~l~---k~~~~ 205 (691)
T KOG2048|consen 145 T---YKRSLMR-----QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQT-LHIIT--MQLD-----RLS---KREPT 205 (691)
T ss_pred E---EEeeccc-----ccceEEEEEecCCccEEEecccCceEEEEEcCCCce-EEEee--eccc-----ccc---cCCce
Confidence 1 0011111 235899999999999999999999999999998753 33111 1111 111 11234
Q ss_pred CcEEEEEecCCEEEEEEeCCcEEEEEecCCccccccCCCCCCeEEEEEecc
Q 003087 292 DITDFAWWSDNILILARKSSIITMIDVLSGLKVKETDPKLRGHVFLLESKS 342 (849)
Q Consensus 292 ~v~~vaws~D~~la~a~~dgti~lwdl~~~~~l~~~~~~~~g~~~~Le~~~ 342 (849)
-||+|.|-.|+.||+|...|+|+.||-..++.+.. -..|+..++.|....
T Consensus 206 iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS-~~~h~adVl~Lav~~ 255 (691)
T KOG2048|consen 206 IVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQS-HSCHDADVLALAVAD 255 (691)
T ss_pred EEEEEEEeecCcEEEecCCceEEEEcccCcchhhh-hhhhhcceeEEEEcC
Confidence 58899998999999999999999999998884432 224566666665543
No 131
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=7.9e-14 Score=160.35 Aligned_cols=191 Identities=14% Similarity=0.112 Sum_probs=124.6
Q ss_pred cceEEEEEcCCCCeEEEEeC----CeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEe-CCCcEEEE--ec
Q 003087 11 KKQVSLFISPRGERVAVAAV----NQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVD-DTHTVYFF--KA 83 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~----~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~-~dgtIrlW--d~ 83 (849)
..+.+++|||||+.||.++. .+|.+|+..++.... ... ..+....++|||||+.||.++ .+|.++|| |+
T Consensus 204 ~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~---l~~-~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~ 279 (429)
T PRK01742 204 QPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV---VAS-FRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGA 279 (429)
T ss_pred CccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE---Eec-CCCccCceeECCCCCEEEEEEecCCcEEEEEEEC
Confidence 56899999999999999863 268899976432111 111 112334689999999999865 68876665 66
Q ss_pred CCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCce
Q 003087 84 NGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNV 163 (849)
Q Consensus 84 ~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V 163 (849)
.+..+.+++.+. ..+.+..|+||+... +++...+|..++|.+...+.... +.++ . .
T Consensus 280 ~~~~~~~lt~~~----~~~~~~~wSpDG~~i------~f~s~~~g~~~I~~~~~~~~~~~-----------~l~~-~-~- 335 (429)
T PRK01742 280 NGGTPSQLTSGA----GNNTEPSWSPDGQSI------LFTSDRSGSPQVYRMSASGGGAS-----------LVGG-R-G- 335 (429)
T ss_pred CCCCeEeeccCC----CCcCCEEECCCCCEE------EEEECCCCCceEEEEECCCCCeE-----------EecC-C-C-
Confidence 666666665432 235678888876431 22334678899998865332111 1111 1 1
Q ss_pred EEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCE
Q 003087 164 ICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKF 243 (849)
Q Consensus 164 ~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~ 243 (849)
.+.+|||||+.||.++.++ +..|++.++.. ..+.. + + ...+++|||||++
T Consensus 336 ~~~~~SpDG~~ia~~~~~~--------------i~~~Dl~~g~~-~~lt~-----------~--~--~~~~~~~sPdG~~ 385 (429)
T PRK01742 336 YSAQISADGKTLVMINGDN--------------VVKQDLTSGST-EVLSS-----------T--F--LDESPSISPNGIM 385 (429)
T ss_pred CCccCCCCCCEEEEEcCCC--------------EEEEECCCCCe-EEecC-----------C--C--CCCCceECCCCCE
Confidence 4578999999998877654 55688765421 11110 1 1 2346889999999
Q ss_pred EEEEeCCCcEEEEecC
Q 003087 244 VATSDTNGCLYIFEMD 259 (849)
Q Consensus 244 LAs~s~Dgtv~LWd~~ 259 (849)
|++++.+|.+++|.+-
T Consensus 386 i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 386 IIYSSTQGLGKVLQLV 401 (429)
T ss_pred EEEEEcCCCceEEEEE
Confidence 9999999999988763
No 132
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=3e-13 Score=146.41 Aligned_cols=259 Identities=12% Similarity=0.160 Sum_probs=160.4
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCC-EEEEEeCCCcEEEEecCCccc
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHD-VLGIVDDTHTVYFFKANGEEI 88 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~-~LAs~~~dgtIrlWd~~g~~~ 88 (849)
++|.+|.|.|....|.+|+ |++++|+.+++..-..+...... .-+|.+..|+|+|+ .+++++.....+.||+...++
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~-~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLE-KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeec-cCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 6799999999999999987 88999998765422212111121 45788999999999 999999999999999975444
Q ss_pred eecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEE
Q 003087 89 TRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDY 168 (849)
Q Consensus 89 ~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svaf 168 (849)
..+.+.-+.-...+.....++++. .+++.|..|-|++....++..... ++ ....|..+.|
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~-------fia~~G~~G~I~lLhakT~eli~s---------~K----ieG~v~~~~f 352 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSN-------FIAIAGNNGHIHLLHAKTKELITS---------FK----IEGVVSDFTF 352 (514)
T ss_pred ccccCCCCcccchhheeEecCCCC-------eEEEcccCceEEeehhhhhhhhhe---------ee----eccEEeeEEE
Confidence 444322110012344444455443 366779999999988776654321 12 2345999999
Q ss_pred cCCCceEEEEecCCCCccccCCCCCCceeeEEEecCC-----------cCccc---------ceeccccceee-------
Q 003087 169 HPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHN-----------LELEQ---------LYTTQIEGLYC------- 221 (849)
Q Consensus 169 sPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~-----------~~~~~---------l~~~~~~~~~~------- 221 (849)
+.||+.|.+.|.++. |.+|++... ..+.. +.++.-.|..-
T Consensus 353 sSdsk~l~~~~~~Ge-------------V~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~ 419 (514)
T KOG2055|consen 353 SSDSKELLASGGTGE-------------VYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSC 419 (514)
T ss_pred ecCCcEEEEEcCCce-------------EEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchh
Confidence 999999988877763 556665442 11111 11111111110
Q ss_pred ----ccCCCc----cccccceEEEccCCCEEEEEeC--CCcEEEEecCCCcccccccccccccccccccccCCCCCCCCC
Q 003087 222 ----EPKGHE----VQLAHPKVLISPQGKFVATSDT--NGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPIS 291 (849)
Q Consensus 222 ----~~~g~~----h~~~V~~vafSPDG~~LAs~s~--Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (849)
.++... -...|.+|+|+||+|+||.+|. ...+||=.+++... .+.|| +. +.-.+
T Consensus 420 ~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TV-FsNfP--------------~~-n~~vg 483 (514)
T KOG2055|consen 420 FASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTV-FSNFP--------------TS-NTKVG 483 (514)
T ss_pred hccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceee-eccCC--------------CC-CCccc
Confidence 000000 1234556666666666655543 45566666654321 22332 11 22345
Q ss_pred CcEEEEEec-CCEEEEEEeCCcEEEEEec
Q 003087 292 DITDFAWWS-DNILILARKSSIITMIDVL 319 (849)
Q Consensus 292 ~v~~vaws~-D~~la~a~~dgti~lwdl~ 319 (849)
.|.+++||| .|-+|+|..+|.|.+|.+.
T Consensus 484 ~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 484 HVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ceEEEEecCCCceEEeecCCCceeeEeec
Confidence 689999999 4679999999999999874
No 133
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=3.7e-13 Score=133.61 Aligned_cols=208 Identities=16% Similarity=0.130 Sum_probs=140.2
Q ss_pred cccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceee---eeecCCCCEEEEEE--------------------
Q 003087 7 PRKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGI---FNCTGLGASIYGAW-------------------- 62 (849)
Q Consensus 7 ~~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~---~~~~~~~~v~~vaf-------------------- 62 (849)
+.+++.|+.++|||+|++||+|| |.+|++.....+.....|. +.. +.+.|+.++|
T Consensus 86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nm-hdgtirdl~fld~~~s~~~il~s~gagdc~ 164 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNM-HDGTIRDLAFLDDPESGGAILASAGAGDCK 164 (350)
T ss_pred cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeee-cCCceeeeEEecCCCcCceEEEecCCCcce
Confidence 44679999999999999999998 5688887543222111110 000 1122222222
Q ss_pred --------------------------CCCCCEEEEEeCCCcEEEEecCC-ccceecccc-c-cc-ccccEEEEEecCCcc
Q 003087 63 --------------------------SESHDVLGIVDDTHTVYFFKANG-EEITRFTNK-H-LK-VSLPIIGLIAQDETD 112 (849)
Q Consensus 63 --------------------------SPDG~~LAs~~~dgtIrlWd~~g-~~~~~l~~~-~-~~-~~~~V~~l~fs~~~~ 112 (849)
|=+|-++|||+.|.|||+||+.- ..+.++... + ++ -+++|.+|+..|.+.
T Consensus 165 iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr 244 (350)
T KOG0641|consen 165 IYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR 244 (350)
T ss_pred EEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc
Confidence 33467788999999999999863 333333221 1 11 136788999888665
Q ss_pred cccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCC
Q 003087 113 VQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNS 192 (849)
Q Consensus 113 ~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~ 192 (849)
..++ ...|..-.+||+..+...+.+. -|...|.||.|||..-+|.+++.|.
T Consensus 245 ll~s-------g~~dssc~lydirg~r~iq~f~------------phsadir~vrfsp~a~yllt~syd~---------- 295 (350)
T KOG0641|consen 245 LLAS-------GHADSSCMLYDIRGGRMIQRFH------------PHSADIRCVRFSPGAHYLLTCSYDM---------- 295 (350)
T ss_pred eeee-------ccCCCceEEEEeeCCceeeeeC------------CCccceeEEEeCCCceEEEEecccc----------
Confidence 4443 3678888999998766533221 2345699999999999999999885
Q ss_pred CCceeeEEEecCCcCccc--ceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecC
Q 003087 193 GPCCISLWRRCHNLELEQ--LYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMD 259 (849)
Q Consensus 193 G~~~I~lW~~~~~~~~~~--l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~ 259 (849)
.|++=|+.+...-+. +... . |.+-+-.+.|.|+.--..+.+.|.|+.||.++
T Consensus 296 ---~ikltdlqgdla~el~~~vv~-------e-----hkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 296 ---KIKLTDLQGDLAHELPIMVVA-------E-----HKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ---eEEEeecccchhhcCceEEEE-------e-----ccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 388888877421111 1111 1 66778899999999999999999999999765
No 134
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.55 E-value=1.9e-13 Score=141.42 Aligned_cols=248 Identities=11% Similarity=0.146 Sum_probs=171.0
Q ss_pred ccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCc--------------------------------------ceee
Q 003087 8 RKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQE--------------------------------------PCGI 48 (849)
Q Consensus 8 ~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~--------------------------------------~~~~ 48 (849)
.+.+.|++|.|+|.|.++++|| |++..||...-+... |+..
T Consensus 188 GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ 267 (481)
T KOG0300|consen 188 GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMR 267 (481)
T ss_pred ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeee
Confidence 4678999999999999999998 568889972110000 0111
Q ss_pred eeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCC
Q 003087 49 FNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSD 127 (849)
Q Consensus 49 ~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~D 127 (849)
++ .+.+.|.+-.|-..|+.+++|+.|.|.-|||+. |+.+..+++|..+ ..-+.-.|... -+.+.+.|
T Consensus 268 lt-gH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~E----LtHcstHptQr-------LVvTsSrD 335 (481)
T KOG0300|consen 268 LT-GHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSE----LTHCSTHPTQR-------LVVTSSRD 335 (481)
T ss_pred ee-ccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchh----ccccccCCcce-------EEEEeccC
Confidence 11 124456677888999999999999999999997 6665555554322 11122233221 13455899
Q ss_pred CcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcC
Q 003087 128 GFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLE 207 (849)
Q Consensus 128 g~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~ 207 (849)
-++|+||+.. .++++ --|+|| ...|.++.|.-|.+. ++|+.|. +|++|++....
T Consensus 336 tTFRLWDFRe-aI~sV---------~VFQGH-tdtVTS~vF~~dd~v-VSgSDDr-------------TvKvWdLrNMR- 389 (481)
T KOG0300|consen 336 TTFRLWDFRE-AIQSV---------AVFQGH-TDTVTSVVFNTDDRV-VSGSDDR-------------TVKVWDLRNMR- 389 (481)
T ss_pred ceeEeccchh-hccee---------eeeccc-ccceeEEEEecCCce-eecCCCc-------------eEEEeeecccc-
Confidence 9999999973 22222 125655 567999999999875 4776676 48999987642
Q ss_pred cccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCC
Q 003087 208 LEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRT 287 (849)
Q Consensus 208 ~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 287 (849)
.+|.+ ++ ...+++.|++|--+.++|.-+.+..|+|+|+.+.+. ..+|-. ++.
T Consensus 390 -splAT------IR------tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rl--aRlPrt-------------sRq 441 (481)
T KOG0300|consen 390 -SPLAT------IR------TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRL--ARLPRT-------------SRQ 441 (481)
T ss_pred -Cccee------ee------cCCccceeEeecCCceEEeccCCceEEEEecCCCcc--ccCCcc-------------ccc
Confidence 12322 11 235889999999999999999999999999998743 444421 123
Q ss_pred CCCCCcEEEEEecCC---EEEEEEeCCcEEEEEecCC
Q 003087 288 KPISDITDFAWWSDN---ILILARKSSIITMIDVLSG 321 (849)
Q Consensus 288 ~~~~~v~~vaws~D~---~la~a~~dgti~lwdl~~~ 321 (849)
+|..-|.+++|..+. .|.+++.|..+.=|++.+.
T Consensus 442 gHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 442 GHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 455668889998765 3778899999999998764
No 135
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.54 E-value=8.9e-13 Score=142.78 Aligned_cols=262 Identities=16% Similarity=0.168 Sum_probs=166.2
Q ss_pred cceEEEEEcCCCC--eEEEEe-CCeEEEEecCCCCCcceeeeee-cCCCCEEEEEECCCC-CEEEEEeCCCcEEEEecCC
Q 003087 11 KKQVSLFISPRGE--RVAVAA-VNQVTILQKDDDYQEPCGIFNC-TGLGASIYGAWSESH-DVLGIVDDTHTVYFFKANG 85 (849)
Q Consensus 11 ~~v~slafSPdG~--~LAsas-~~~i~iw~~~~~~~~~~~~~~~-~~~~~v~~vafSPDG-~~LAs~~~dgtIrlWd~~g 85 (849)
++|.+++|.|--. +||+|. .|+|-+|+...+.....+.+.. .+...|.++.|||.. ..+.+.|.|||||+=|+.+
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~ 266 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEG 266 (498)
T ss_pred cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecc
Confidence 7799999999765 667775 5899999984221111122221 236789999999944 5677889999999999986
Q ss_pred ccceecccccccccccEEEEEecC-CcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceE
Q 003087 86 EEITRFTNKHLKVSLPIIGLIAQD-ETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVI 164 (849)
Q Consensus 86 ~~~~~l~~~~~~~~~~V~~l~fs~-~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~ 164 (849)
.....+..-. .-...+.++.|+. +. .++.++.=|.+.+||..+++.. ++ .+. -|+..|.
T Consensus 267 ~i~e~v~s~~-~d~~~fs~~d~~~e~~--------~vl~~~~~G~f~~iD~R~~~s~--~~--------~~~-lh~kKI~ 326 (498)
T KOG4328|consen 267 NISEEVLSLD-TDNIWFSSLDFSAESR--------SVLFGDNVGNFNVIDLRTDGSE--YE--------NLR-LHKKKIT 326 (498)
T ss_pred hhhHHHhhcC-ccceeeeeccccCCCc--------cEEEeecccceEEEEeecCCcc--ch--------hhh-hhhcccc
Confidence 5422222111 1112334455533 22 2344455679999999887652 11 111 2234699
Q ss_pred EEEEcCCCc-eEEEEecCCCCccccCCCCCCceeeEEEecCCc-CcccceeccccceeeccCCCccccccceEEEccCCC
Q 003087 165 CTDYHPELS-LLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNL-ELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGK 242 (849)
Q Consensus 165 svafsPdg~-lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~-~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~ 242 (849)
+|+++|-.. +||++|.|+| .+|||+..-. .-+++. +. +.|...|.++.|||+|-
T Consensus 327 sv~~NP~~p~~laT~s~D~T-------------~kIWD~R~l~~K~sp~l--------st---~~HrrsV~sAyFSPs~g 382 (498)
T KOG4328|consen 327 SVALNPVCPWFLATASLDQT-------------AKIWDLRQLRGKASPFL--------ST---LPHRRSVNSAYFSPSGG 382 (498)
T ss_pred eeecCCCCchheeecccCcc-------------eeeeehhhhcCCCCcce--------ec---ccccceeeeeEEcCCCC
Confidence 999999776 5789999985 7899985421 001111 11 11888999999999999
Q ss_pred EEEEEeCCCcEEEEecCC---CcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEe
Q 003087 243 FVATSDTNGCLYIFEMDK---DNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDV 318 (849)
Q Consensus 243 ~LAs~s~Dgtv~LWd~~~---~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl 318 (849)
.|+|.+.|..|+|||..- .-+.+.... | ++..+.+.. ..-..|-||-. +++|..-..|-|+|-
T Consensus 383 tl~TT~~D~~IRv~dss~~sa~~~p~~~I~------H------n~~t~RwlT-~fKA~W~P~~~li~vg~~~r~IDv~~~ 449 (498)
T KOG4328|consen 383 TLLTTCQDNEIRVFDSSCISAKDEPLGTIP------H------NNRTGRWLT-PFKAAWDPDYNLIVVGRYPRPIDVFDG 449 (498)
T ss_pred ceEeeccCCceEEeecccccccCCccceee------c------cCccccccc-chhheeCCCccEEEEeccCcceeEEcC
Confidence 999999999999999951 101011111 0 000012322 34578888754 667888888999998
Q ss_pred cCCccccc-cCC
Q 003087 319 LSGLKVKE-TDP 329 (849)
Q Consensus 319 ~~~~~l~~-~~~ 329 (849)
.+++.+.+ +.|
T Consensus 450 ~~~q~v~el~~P 461 (498)
T KOG4328|consen 450 NGGQMVCELHDP 461 (498)
T ss_pred CCCEEeeeccCc
Confidence 88885543 344
No 136
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.53 E-value=2.2e-13 Score=145.72 Aligned_cols=153 Identities=12% Similarity=0.066 Sum_probs=105.2
Q ss_pred cceEEEEEcCCCC-eEEEEe-CCeEEEEecCCC-CCc--ceeeee---ecCCCCEEEEEECCCCCEEEEEeCCCcEEEEe
Q 003087 11 KKQVSLFISPRGE-RVAVAA-VNQVTILQKDDD-YQE--PCGIFN---CTGLGASIYGAWSESHDVLGIVDDTHTVYFFK 82 (849)
Q Consensus 11 ~~v~slafSPdG~-~LAsas-~~~i~iw~~~~~-~~~--~~~~~~---~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd 82 (849)
..|.++.|-+++. .||+|+ |..|+||..... .+. ..-.+. .+|+..|+.|.|||+|.+||||+++|.|.+|.
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 5789999999999 999997 678999975422 111 111121 23467899999999999999999999999998
Q ss_pred cCCccce------ecccc-------cccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCccccccccc
Q 003087 83 ANGEEIT------RFTNK-------HLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASAS 149 (849)
Q Consensus 83 ~~g~~~~------~l~~~-------~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~ 149 (849)
.....+. .+.+. ...+...|..+++++++.. +.+.+.|.++++||+..|.....+
T Consensus 94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~-------l~s~s~dns~~l~Dv~~G~l~~~~----- 161 (434)
T KOG1009|consen 94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNF-------LVSGSVDNSVRLWDVHAGQLLAIL----- 161 (434)
T ss_pred ecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCce-------eeeeeccceEEEEEeccceeEeec-----
Confidence 7522111 00000 0001122334444444332 345589999999999987764432
Q ss_pred CCcceeccccCCceEEEEEcCCCceEEEEecCC
Q 003087 150 SSGLTLRRQFPQNVICTDYHPELSLLSVVSNTD 182 (849)
Q Consensus 150 ~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~ 182 (849)
+.|.+-|..++|.|-++.+++-|+|.
T Consensus 162 -------~dh~~yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 162 -------DDHEHYVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred -------cccccccceeecchhhhhhhhhccCc
Confidence 25566799999999999999999886
No 137
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=7.4e-13 Score=137.53 Aligned_cols=242 Identities=14% Similarity=0.212 Sum_probs=153.9
Q ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEE
Q 003087 54 LGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQI 133 (849)
Q Consensus 54 ~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw 133 (849)
...|.+|.|||.++.|.+++.||+++|+++....+..... +..++...+|.|+. +.++++.||+|+.+
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~----~~~plL~c~F~d~~--------~~~~G~~dg~vr~~ 80 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK----HGAPLLDCAFADES--------TIVTGGLDGQVRRY 80 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee----cCCceeeeeccCCc--------eEEEeccCceEEEE
Confidence 4578999999999999999999999999998765433322 23689999997743 35566899999999
Q ss_pred EecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcC------
Q 003087 134 EISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLE------ 207 (849)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~------ 207 (849)
|+.++....+ |.|..+|.||.|++.-..+++||+|++ |++||+.....
T Consensus 81 Dln~~~~~~i-------------gth~~~i~ci~~~~~~~~vIsgsWD~~-------------ik~wD~R~~~~~~~~d~ 134 (323)
T KOG1036|consen 81 DLNTGNEDQI-------------GTHDEGIRCIEYSYEVGCVISGSWDKT-------------IKFWDPRNKVVVGTFDQ 134 (323)
T ss_pred EecCCcceee-------------ccCCCceEEEEeeccCCeEEEcccCcc-------------EEEEecccccccccccc
Confidence 9998665322 245678999999997777789999985 78888763200
Q ss_pred cccceecccc----------------------ceee-ccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcc-
Q 003087 208 LEQLYTTQIE----------------------GLYC-EPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNF- 263 (849)
Q Consensus 208 ~~~l~~~~~~----------------------~~~~-~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~- 263 (849)
...+.+.... -.++ ...+ -.-.+++|++=|.+.=-|.+|.||.|.+=.++....
T Consensus 135 ~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~--lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~ 212 (323)
T KOG1036|consen 135 GKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESS--LKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEA 212 (323)
T ss_pred CceEEEEeccCCEEEEeecCceEEEEEcccccchhhhcccc--ceeEEEEEEEecCCCceEEEeecceEEEEccCCchHH
Confidence 0001000000 0000 0001 122455666666665566666666666543333210
Q ss_pred cccc--cccccccccccccccCCCCCCCCCCcEEEEEecC-CEEEEEEeCCcEEEEEecCCccccc--cCC--------C
Q 003087 264 SLSK--FACGERFDLQVADSLFDGRTKPISDITDFAWWSD-NILILARKSSIITMIDVLSGLKVKE--TDP--------K 330 (849)
Q Consensus 264 ~l~~--~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D-~~la~a~~dgti~lwdl~~~~~l~~--~~~--------~ 330 (849)
+-++ |.+|.+.. ++.+...+|.+++|+|= |.+|+|+.||-|.+||+.+.+.+.+ ..+ .
T Consensus 213 ~skkyaFkCHr~~~---------~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs 283 (323)
T KOG1036|consen 213 QSKKYAFKCHRLSE---------KDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFS 283 (323)
T ss_pred hhhceeEEeeeccc---------CCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEec
Confidence 0011 22222111 01123357889999995 6799999999999999998875542 111 4
Q ss_pred CCCeEEEEEecccc
Q 003087 331 LRGHVFLLESKSVE 344 (849)
Q Consensus 331 ~~g~~~~Le~~~~~ 344 (849)
++|..+++.++...
T Consensus 284 ~dG~~LAia~sy~y 297 (323)
T KOG1036|consen 284 MDGSLLAIASSYQY 297 (323)
T ss_pred cCCCeEEEEechhh
Confidence 58888888876544
No 138
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.52 E-value=7.3e-13 Score=136.09 Aligned_cols=214 Identities=13% Similarity=0.126 Sum_probs=149.4
Q ss_pred ccceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeee----ecCCCCEEEEEECC--CCCEEEEEeCCCcEEEEec
Q 003087 10 TKKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFN----CTGLGASIYGAWSE--SHDVLGIVDDTHTVYFFKA 83 (849)
Q Consensus 10 ~~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~----~~~~~~v~~vafSP--DG~~LAs~~~dgtIrlWd~ 83 (849)
.++|..|-|-||++.||+..++.|.+|+....... ..... ..+...+++.+||| ||..+|+.+ |+|++.||+
T Consensus 123 vg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~-vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~ 200 (370)
T KOG1007|consen 123 VGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKI-VAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDL 200 (370)
T ss_pred hCceeeEEEcCCCCeeEEeccCceEEEEcccCcch-heeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEc
Confidence 47899999999999999999999999997653221 11111 12245678999999 999999886 589999998
Q ss_pred C-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCc
Q 003087 84 N-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQN 162 (849)
Q Consensus 84 ~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 162 (849)
. -++...|...|+ ..|+.|.|+|+.. +.+++++.||.||+||....+.. + +++. .|...
T Consensus 201 RT~~~~~sI~dAHg---q~vrdlDfNpnkq------~~lvt~gDdgyvriWD~R~tk~p-v---------~el~-~HsHW 260 (370)
T KOG1007|consen 201 RTMKKNNSIEDAHG---QRVRDLDFNPNKQ------HILVTCGDDGYVRIWDTRKTKFP-V---------QELP-GHSHW 260 (370)
T ss_pred cchhhhcchhhhhc---ceeeeccCCCCce------EEEEEcCCCccEEEEeccCCCcc-c---------cccC-CCceE
Confidence 6 345556666564 4689999998543 25778899999999998754432 1 2344 45678
Q ss_pred eEEEEEcCCCc-eEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccc-----------------eeccccceeeccC
Q 003087 163 VICTDYHPELS-LLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQL-----------------YTTQIEGLYCEPK 224 (849)
Q Consensus 163 V~svafsPdg~-lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l-----------------~~~~~~~~~~~~~ 224 (849)
|++|.|+|.+. ++.+||+|. .|-||.+.+...-+++ ..+-..|.+..+.
T Consensus 261 vW~VRfn~~hdqLiLs~~SDs-------------~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyd 327 (370)
T KOG1007|consen 261 VWAVRFNPEHDQLILSGGSDS-------------AVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYD 327 (370)
T ss_pred EEEEEecCccceEEEecCCCc-------------eeEEEeccccccccccccccccccCcchhhHHhccccccccccccc
Confidence 99999999876 556777775 3566665432100000 0000124444444
Q ss_pred CCccccccceEEEccCC-CEEEEEeCCCcEEEEecCC
Q 003087 225 GHEVQLAHPKVLISPQG-KFVATSDTNGCLYIFEMDK 260 (849)
Q Consensus 225 g~~h~~~V~~vafSPDG-~~LAs~s~Dgtv~LWd~~~ 260 (849)
. |.+.|++++||.-. =+.||.|.||.|-|=.++.
T Consensus 328 e--hEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 328 E--HEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred c--cccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 5 99999999998644 5589999999998876663
No 139
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.52 E-value=8.9e-13 Score=147.51 Aligned_cols=258 Identities=11% Similarity=0.115 Sum_probs=160.5
Q ss_pred cccceEEEEEcCCCC-eEEEEe-CCeEEEEecCCCCCcceeeee-ecCCCCEEEEEECCCC-CEEEEEeCCCcEEEEecC
Q 003087 9 KTKKQVSLFISPRGE-RVAVAA-VNQVTILQKDDDYQEPCGIFN-CTGLGASIYGAWSESH-DVLGIVDDTHTVYFFKAN 84 (849)
Q Consensus 9 ~~~~v~slafSPdG~-~LAsas-~~~i~iw~~~~~~~~~~~~~~-~~~~~~v~~vafSPDG-~~LAs~~~dgtIrlWd~~ 84 (849)
+-+.|..++|-| |+ .|++++ |.+|+.|++... ...|.-. .+|...|.+++|.|+. ..+++|+.||.|.|||..
T Consensus 99 H~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s--~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R 175 (720)
T KOG0321|consen 99 HKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTS--RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCR 175 (720)
T ss_pred ccceeEeeccCC-CceeEEEccCCceeeeeeeccc--eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEe
Confidence 448899999999 66 566776 579999998643 3344311 2347789999999955 567899999999999974
Q ss_pred --Cc-----cceeccccc---------------------ccccccEEEEEecCCcccccccceeEEEEeC-CCcEEEEEe
Q 003087 85 --GE-----EITRFTNKH---------------------LKVSLPIIGLIAQDETDVQRSCLCSFTVFTS-DGFLHQIEI 135 (849)
Q Consensus 85 --g~-----~~~~l~~~~---------------------~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~-Dg~v~lw~~ 135 (849)
+. ....+...| ..+.+.|..|.|.|+.. +++++. ||+|++||+
T Consensus 176 ~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~t--------laSaga~D~~iKVWDL 247 (720)
T KOG0321|consen 176 CNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDEST--------LASAGAADSTIKVWDL 247 (720)
T ss_pred ccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccce--------eeeccCCCcceEEEee
Confidence 31 011111111 01112355677766332 333344 999999999
Q ss_pred cCCCCcccccccccCCcceecccc--CCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCccccee
Q 003087 136 SQDPSASISSASASSSGLTLRRQF--PQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYT 213 (849)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~~~--~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~ 213 (849)
.+....-..+..- .+. +..+. ..++.++....-|..|.+.-.|+ .|..|++.+-. ..++.
T Consensus 248 Rk~~~~~r~ep~~-~~~--~~t~skrs~G~~nL~lDssGt~L~AsCtD~-------------sIy~ynm~s~s-~sP~~- 309 (720)
T KOG0321|consen 248 RKNYTAYRQEPRG-SDK--YPTHSKRSVGQVNLILDSSGTYLFASCTDN-------------SIYFYNMRSLS-ISPVA- 309 (720)
T ss_pred cccccccccCCCc-ccC--ccCcccceeeeEEEEecCCCCeEEEEecCC-------------cEEEEeccccC-cCchh-
Confidence 8755422211000 000 11011 12577777777777764433454 28999987631 11111
Q ss_pred ccccceeeccCCCc-cccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCC
Q 003087 214 TQIEGLYCEPKGHE-VQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISD 292 (849)
Q Consensus 214 ~~~~~~~~~~~g~~-h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (849)
. +.|.. ..-.| +=..||||++|+||+.|+...+|.+.+.......+ .+|...
T Consensus 310 -----~---~sg~~~~sf~v-ks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l------------------~Ght~e 362 (720)
T KOG0321|consen 310 -----E---FSGKLNSSFYV-KSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL------------------LGHTRE 362 (720)
T ss_pred -----h---ccCcccceeee-eeecCCCCceEeccCCCcceeeeeecCccCChhhh------------------hCcceE
Confidence 1 11100 00122 33569999999999999999999999764321111 145667
Q ss_pred cEEEEEec--CCEEEEEEeCCcEEEEEecCCc
Q 003087 293 ITDFAWWS--DNILILARKSSIITMIDVLSGL 322 (849)
Q Consensus 293 v~~vaws~--D~~la~a~~dgti~lwdl~~~~ 322 (849)
|..|.|.| +..+|+++.|-+++||++..+-
T Consensus 363 Vt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 363 VTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred EEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 89999987 4568889999999999997653
No 140
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.52 E-value=4.8e-13 Score=150.40 Aligned_cols=250 Identities=12% Similarity=0.110 Sum_probs=174.5
Q ss_pred ccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeee-ecCCCCEEEEEECC---CCCEEEEEeCCCcEEEEecC
Q 003087 10 TKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFN-CTGLGASIYGAWSE---SHDVLGIVDDTHTVYFFKAN 84 (849)
Q Consensus 10 ~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~-~~~~~~v~~vafSP---DG~~LAs~~~dgtIrlWd~~ 84 (849)
|..+.+|++|||||+||+|. .|+++|.++.. ..-.+. ..|...|.++.||- ..++||||+.|+-|+|+|+.
T Consensus 459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~----l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~ 534 (1080)
T KOG1408|consen 459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQE----LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK 534 (1080)
T ss_pred ccceEEEEECCCcceecccCccCceEEEEehh----hhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence 56799999999999999996 58899998642 111122 22467899999994 36899999999999999996
Q ss_pred CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecC-CCCcccccccccCCcceeccccCCce
Q 003087 85 GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQ-DPSASISSASASSSGLTLRRQFPQNV 163 (849)
Q Consensus 85 g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~V 163 (849)
.+. .+.....++++.|.+|-|.-.+. .-.+++++.|..|- +...+ ......+. .+.-+++ +..+
T Consensus 535 rny--~l~qtld~HSssITsvKFa~~gl-----n~~MiscGADksim-Fr~~qk~~~g~~f~----r~t~t~~---ktTl 599 (1080)
T KOG1408|consen 535 RNY--DLVQTLDGHSSSITSVKFACNGL-----NRKMISCGADKSIM-FRVNQKASSGRLFP----RHTQTLS---KTTL 599 (1080)
T ss_pred ccc--chhhhhcccccceeEEEEeecCC-----ceEEEeccCchhhh-eehhccccCceecc----ccccccc---cceE
Confidence 442 22222234467899999954221 11466777777652 22111 11111111 1111111 1358
Q ss_pred EEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCE
Q 003087 164 ICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKF 243 (849)
Q Consensus 164 ~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~ 243 (849)
+.++..|..+++++++-|+. |+++++.++... ..|....+ |.+..-+|..-|-|.+
T Consensus 600 YDm~Vdp~~k~v~t~cQDrn-------------irif~i~sgKq~---------k~FKgs~~--~eG~lIKv~lDPSgiY 655 (1080)
T KOG1408|consen 600 YDMAVDPTSKLVVTVCQDRN-------------IRIFDIESGKQV---------KSFKGSRD--HEGDLIKVILDPSGIY 655 (1080)
T ss_pred EEeeeCCCcceEEEEecccc-------------eEEEecccccee---------eeeccccc--CCCceEEEEECCCccE
Confidence 99999999999999988873 899988775311 12222223 6677789999999999
Q ss_pred EEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecCC
Q 003087 244 VATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVLSG 321 (849)
Q Consensus 244 LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~ 321 (849)
|||.-.|.++.++|..+++| +.+.. +|..-|..+-|.+|-+ |++++.||-|.||.++.-
T Consensus 656 ~atScsdktl~~~Df~sgEc-vA~m~------------------GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 656 LATSCSDKTLCFVDFVSGEC-VAQMT------------------GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred EEEeecCCceEEEEeccchh-hhhhc------------------CcchheeeeeecccchhheeecCCceEEEEECchh
Confidence 99999999999999999877 44443 3445688899999975 889999999999999854
No 141
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=2e-14 Score=162.36 Aligned_cols=202 Identities=14% Similarity=0.203 Sum_probs=147.0
Q ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEEecC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEE
Q 003087 54 LGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQ 132 (849)
Q Consensus 54 ~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~l 132 (849)
...+.++..-..++.+++|+.|..+-||... -..+..+.+| ..+|.+|.|.......+ .++.+|+|++
T Consensus 28 saav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~h----espIeSl~f~~~E~Lla-------agsasgtiK~ 96 (825)
T KOG0267|consen 28 SAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGH----ESPIESLTFDTSERLLA-------AGSASGTIKV 96 (825)
T ss_pred hhhhceeeeeccceeeccCCCceeeccccccCCchhheeecc----CCcceeeecCcchhhhc-------ccccCCceee
Confidence 4455566656678999999999999999875 2333444443 36899999976432222 2278999999
Q ss_pred EEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccce
Q 003087 133 IEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLY 212 (849)
Q Consensus 133 w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~ 212 (849)
||+..++.... |.|| ...+.+|+|||=|.+.|+|+.|. -+++||....
T Consensus 97 wDleeAk~vrt-----------Ltgh-~~~~~sv~f~P~~~~~a~gStdt-------------d~~iwD~Rk~------- 144 (825)
T KOG0267|consen 97 WDLEEAKIVRT-----------LTGH-LLNITSVDFHPYGEFFASGSTDT-------------DLKIWDIRKK------- 144 (825)
T ss_pred eehhhhhhhhh-----------hhcc-ccCcceeeeccceEEeccccccc-------------cceehhhhcc-------
Confidence 99997765443 4444 44699999999999998887774 2788987532
Q ss_pred eccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCC
Q 003087 213 TTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISD 292 (849)
Q Consensus 213 ~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (849)
|+...++| |...|..++|||||+++|+++.|.+++|||+..+.+ ++.|.. |...
T Consensus 145 -----Gc~~~~~s--~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~-~~ef~~------------------~e~~ 198 (825)
T KOG0267|consen 145 -----GCSHTYKS--HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKL-SKEFKS------------------HEGK 198 (825)
T ss_pred -----CceeeecC--CcceeEEEeecCCCceeeccCCcceeeeeccccccc-cccccc------------------cccc
Confidence 33344566 888999999999999999999999999999987754 344442 2234
Q ss_pred cEEEEEecCCE-EEEEEeCCcEEEEEecCCccc
Q 003087 293 ITDFAWWSDNI-LILARKSSIITMIDVLSGLKV 324 (849)
Q Consensus 293 v~~vaws~D~~-la~a~~dgti~lwdl~~~~~l 324 (849)
+..+-|.|-.. ++.|+.|++|++||+.+-+.+
T Consensus 199 v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I 231 (825)
T KOG0267|consen 199 VQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVI 231 (825)
T ss_pred ccccccCchhhhhccCCCCceeeeeccceeEEe
Confidence 44555666443 678999999999999876543
No 142
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=2.6e-13 Score=146.15 Aligned_cols=207 Identities=9% Similarity=0.046 Sum_probs=138.8
Q ss_pred eEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Ccccee
Q 003087 13 QVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEITR 90 (849)
Q Consensus 13 v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~~~ 90 (849)
=..|+|++||..||+++ |+++|||++.+.. +.. ....++..|.++.|||||++||+-+.| ..+||+++ |..+.+
T Consensus 147 ~k~vaf~~~gs~latgg~dg~lRv~~~Ps~~--t~l-~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 147 QKVVAFNGDGSKLATGGTDGTLRVWEWPSML--TIL-EEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALAR 222 (398)
T ss_pred ceEEEEcCCCCEeeeccccceEEEEecCcch--hhh-hhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhh
Confidence 37899999999999997 8999999965421 111 112347899999999999999999999 89999997 766665
Q ss_pred cccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcC
Q 003087 91 FTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHP 170 (849)
Q Consensus 91 l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsP 170 (849)
..+... ...+....|+-+... .. ..-+++...-|.|+.|+++.-.-...+. ..+....+ +.|++++.|+
T Consensus 223 ~t~~~k--~~~~~~cRF~~d~~~-~~-l~laa~~~~~~~v~~~~~~~w~~~~~l~------~~~~~~~~-~siSsl~VS~ 291 (398)
T KOG0771|consen 223 KTPFSK--DEMFSSCRFSVDNAQ-ET-LRLAASQFPGGGVRLCDISLWSGSNFLR------LRKKIKRF-KSISSLAVSD 291 (398)
T ss_pred cCCccc--chhhhhceecccCCC-ce-EEEEEecCCCCceeEEEeeeeccccccc------hhhhhhcc-CcceeEEEcC
Confidence 543221 223445667543311 10 0112333455677777776422111111 01111122 3699999999
Q ss_pred CCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCC
Q 003087 171 ELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTN 250 (849)
Q Consensus 171 dg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~D 250 (849)
||+++|.|+.++ + |.+.+...- +.+ .+ .++. |...|..|.||||.+.+++.+.|
T Consensus 292 dGkf~AlGT~dG-----------s--Vai~~~~~l---q~~------~~--vk~a--H~~~VT~ltF~Pdsr~~~svSs~ 345 (398)
T KOG0771|consen 292 DGKFLALGTMDG-----------S--VAIYDAKSL---QRL------QY--VKEA--HLGFVTGLTFSPDSRYLASVSSD 345 (398)
T ss_pred CCcEEEEeccCC-----------c--EEEEEecee---eee------Ee--ehhh--heeeeeeEEEcCCcCcccccccC
Confidence 999999998875 2 677766542 111 11 1122 78899999999999999999999
Q ss_pred CcEEEEecCC
Q 003087 251 GCLYIFEMDK 260 (849)
Q Consensus 251 gtv~LWd~~~ 260 (849)
.+..+-.+..
T Consensus 346 ~~~~v~~l~v 355 (398)
T KOG0771|consen 346 NEAAVTKLAV 355 (398)
T ss_pred CceeEEEEee
Confidence 9999998875
No 143
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.50 E-value=6.1e-13 Score=143.67 Aligned_cols=238 Identities=15% Similarity=0.194 Sum_probs=156.7
Q ss_pred CCCeEEEEe-CCeEEEEecCCC-CCcceeeee-----------------ecCCCCEEEEEECCC-CCEEEEEeCCCcEEE
Q 003087 21 RGERVAVAA-VNQVTILQKDDD-YQEPCGIFN-----------------CTGLGASIYGAWSES-HDVLGIVDDTHTVYF 80 (849)
Q Consensus 21 dG~~LAsas-~~~i~iw~~~~~-~~~~~~~~~-----------------~~~~~~v~~vafSPD-G~~LAs~~~dgtIrl 80 (849)
-|+++|.|. +-.|.|||++-. ...|+-++- .+|...|..++|.-+ ...|||||.|.||+|
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 478999998 679999986521 111211110 012345567777654 468999999999999
Q ss_pred EecC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceecccc
Q 003087 81 FKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQF 159 (849)
Q Consensus 81 Wd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (849)
||+. |+....+ .+|. ..|.++.|.|.. .+ .+.++++||+|.+.|....... +..|++.|
T Consensus 271 WD~~~g~p~~s~-~~~~---k~Vq~l~wh~~~---p~---~LLsGs~D~~V~l~D~R~~~~s--------~~~wk~~g-- 330 (463)
T KOG0270|consen 271 WDVDTGKPKSSI-THHG---KKVQTLEWHPYE---PS---VLLSGSYDGTVALKDCRDPSNS--------GKEWKFDG-- 330 (463)
T ss_pred EEcCCCCcceeh-hhcC---CceeEEEecCCC---ce---EEEeccccceEEeeeccCcccc--------CceEEecc--
Confidence 9997 6654444 4553 579999998721 11 2556689999999998752221 22345443
Q ss_pred CCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEcc
Q 003087 160 PQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISP 239 (849)
Q Consensus 160 ~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSP 239 (849)
.|-.|+|.|.....+.+|.|+ | +|+-.|+... ..++++.+ . |.++|.++++++
T Consensus 331 --~VEkv~w~~~se~~f~~~tdd----------G--~v~~~D~R~~--~~~vwt~~---------A--Hd~~ISgl~~n~ 383 (463)
T KOG0270|consen 331 --EVEKVAWDPHSENSFFVSTDD----------G--TVYYFDIRNP--GKPVWTLK---------A--HDDEISGLSVNI 383 (463)
T ss_pred --ceEEEEecCCCceeEEEecCC----------c--eEEeeecCCC--CCceeEEE---------e--ccCCcceEEecC
Confidence 489999999888766666554 3 3777776553 23444432 2 888999999987
Q ss_pred CC-CEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecC--CEEEEEEeCCcEEEE
Q 003087 240 QG-KFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSD--NILILARKSSIITMI 316 (849)
Q Consensus 240 DG-~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D--~~la~a~~dgti~lw 316 (849)
.- .+|+|+|.|++|+||++...... .... . . + -.+...++++-|+ +.+|.|+..+-++||
T Consensus 384 ~~p~~l~t~s~d~~Vklw~~~~~~~~--~v~~-~--~------~------~~~rl~c~~~~~~~a~~la~GG~k~~~~vw 446 (463)
T KOG0270|consen 384 QTPGLLSTASTDKVVKLWKFDVDSPK--SVKE-H--S------F------KLGRLHCFALDPDVAFTLAFGGEKAVLRVW 446 (463)
T ss_pred CCCcceeeccccceEEEEeecCCCCc--cccc-c--c------c------cccceeecccCCCcceEEEecCccceEEEe
Confidence 65 46999999999999999865321 1100 0 0 0 0122344555554 358888888899999
Q ss_pred EecCCc
Q 003087 317 DVLSGL 322 (849)
Q Consensus 317 dl~~~~ 322 (849)
|+.+..
T Consensus 447 d~~~~~ 452 (463)
T KOG0270|consen 447 DIFTNS 452 (463)
T ss_pred ecccCh
Confidence 998875
No 144
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.50 E-value=4.7e-13 Score=141.84 Aligned_cols=208 Identities=13% Similarity=0.104 Sum_probs=137.6
Q ss_pred CCCEEEEEECC--CCCEEEEEeCCCcEEEEecCCcc-----------------ceecccccccccccEEEEEecCCcccc
Q 003087 54 LGASIYGAWSE--SHDVLGIVDDTHTVYFFKANGEE-----------------ITRFTNKHLKVSLPIIGLIAQDETDVQ 114 (849)
Q Consensus 54 ~~~v~~vafSP--DG~~LAs~~~dgtIrlWd~~g~~-----------------~~~l~~~~~~~~~~V~~l~fs~~~~~~ 114 (849)
.+.+..+.-+| +..+.|+=+..|.|+||++.... +++..+|. .-=.+|.|||-...
T Consensus 151 ~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk----~EGy~LdWSp~~~g- 225 (440)
T KOG0302|consen 151 YGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHK----GEGYGLDWSPIKTG- 225 (440)
T ss_pred ccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccC----ccceeeeccccccc-
Confidence 34454444444 66788888999999999974321 11111111 11236777771110
Q ss_pred cccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCc-eEEEEecCCCCccccCCCCC
Q 003087 115 RSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELS-LLSVVSNTDTSSLTSSGNSG 193 (849)
Q Consensus 115 ~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~-lLas~g~d~t~~~~~~~~~G 193 (849)
.++++.--+.|++|..++|.-.- ....|.| |+..|-.+.|||..+ .+||+|+|++
T Consensus 226 -----~LlsGDc~~~I~lw~~~~g~W~v--------d~~Pf~g-H~~SVEDLqWSptE~~vfaScS~Dgs---------- 281 (440)
T KOG0302|consen 226 -----RLLSGDCVKGIHLWEPSTGSWKV--------DQRPFTG-HTKSVEDLQWSPTEDGVFASCSCDGS---------- 281 (440)
T ss_pred -----ccccCccccceEeeeeccCceee--------cCccccc-cccchhhhccCCccCceEEeeecCce----------
Confidence 12222334568999998765421 1123555 567899999999655 7899999973
Q ss_pred CceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccc
Q 003087 194 PCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGER 273 (849)
Q Consensus 194 ~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~ 273 (849)
|++||+..++.-..+. . +. |..-|+-|+|+-+-.+||||+.||+++|||+..-+. .
T Consensus 282 ---IrIWDiRs~~~~~~~~---------~-kA--h~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~--~------- 337 (440)
T KOG0302|consen 282 ---IRIWDIRSGPKKAAVS---------T-KA--HNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKS--G------- 337 (440)
T ss_pred ---EEEEEecCCCccceeE---------e-ec--cCCceeeEEccCCcceeeecCCCceEEEEEhhhccC--C-------
Confidence 9999998763211111 1 23 778999999999999999999999999999975421 1
Q ss_pred cccccccccCCCCCCCCCCcEEEEEec--CCEEEEEEeCCcEEEEEecCC
Q 003087 274 FDLQVADSLFDGRTKPISDITDFAWWS--DNILILARKSSIITMIDVLSG 321 (849)
Q Consensus 274 ~~~~~~~~l~~~~~~~~~~v~~vaws~--D~~la~a~~dgti~lwdl~~~ 321 (849)
.+++ .-+-|..+|.+|.|+| ++.+++++.|..|.|||+..-
T Consensus 338 --~pVA-----~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 338 --QPVA-----TFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred --Ccce-----eEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 1110 0024678899999998 456888999999999999754
No 145
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=1.4e-12 Score=141.72 Aligned_cols=251 Identities=16% Similarity=0.109 Sum_probs=166.6
Q ss_pred CCeEEEEeC--CeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cccceecccccccc
Q 003087 22 GERVAVAAV--NQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEITRFTNKHLKV 98 (849)
Q Consensus 22 G~~LAsas~--~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~~~l~~~~~~~ 98 (849)
+++|++|+- ..+.+|......+. ...+.. .+.|.+++=+|+|.+|+.|.-.|.|++|.+. |..+..+.. |.
T Consensus 50 ~~yllsaq~~rp~l~vw~i~k~~~~-~q~~v~--Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~a-HY-- 123 (476)
T KOG0646|consen 50 NEYLLSAQLKRPLLHVWEILKKDQV-VQYIVL--PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSA-HY-- 123 (476)
T ss_pred hhheeeecccCccccccccCchhhh-hhhccc--ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHh-hc--
Confidence 467777763 46788875421110 111111 4578999999999999999999999999997 777766644 43
Q ss_pred cccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcc-eeccccCCceEEEEEcCCCc--eE
Q 003087 99 SLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGL-TLRRQFPQNVICTDYHPELS--LL 175 (849)
Q Consensus 99 ~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~V~svafsPdg~--lL 175 (849)
.+|..+.|++|+. +|+++|.||.|++|.+..--. ... +.+-.++ .|. +|.-.|..+...+.|. .|
T Consensus 124 -Q~ITcL~fs~dgs-------~iiTgskDg~V~vW~l~~lv~--a~~-~~~~~p~~~f~-~HtlsITDl~ig~Gg~~~rl 191 (476)
T KOG0646|consen 124 -QSITCLKFSDDGS-------HIITGSKDGAVLVWLLTDLVS--ADN-DHSVKPLHIFS-DHTLSITDLQIGSGGTNARL 191 (476)
T ss_pred -cceeEEEEeCCCc-------EEEecCCCccEEEEEEEeecc--ccc-CCCccceeeec-cCcceeEEEEecCCCccceE
Confidence 4699999998764 477789999999999864111 100 0000111 222 5566788887776543 57
Q ss_pred EEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEE
Q 003087 176 SVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYI 255 (849)
Q Consensus 176 as~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~L 255 (849)
+++|.|.| +++|++..+. .+.+.. ....+.+|++.|-++.+..|+.+|.|.+
T Consensus 192 ~TaS~D~t-------------~k~wdlS~g~---LLlti~------------fp~si~av~lDpae~~~yiGt~~G~I~~ 243 (476)
T KOG0646|consen 192 YTASEDRT-------------IKLWDLSLGV---LLLTIT------------FPSSIKAVALDPAERVVYIGTEEGKIFQ 243 (476)
T ss_pred EEecCCce-------------EEEEEeccce---eeEEEe------------cCCcceeEEEcccccEEEecCCcceEEe
Confidence 79999974 8999998762 222211 1237789999999999999999999998
Q ss_pred EecCCCc---ccccccccccccccccccccCCCCCCCCC--CcEEEEEecCCE-EEEEEeCCcEEEEEecCCccc
Q 003087 256 FEMDKDN---FSLSKFACGERFDLQVADSLFDGRTKPIS--DITDFAWWSDNI-LILARKSSIITMIDVLSGLKV 324 (849)
Q Consensus 256 Wd~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~~~~~--~v~~vaws~D~~-la~a~~dgti~lwdl~~~~~l 324 (849)
-++.+.. .-+.+-..++ +..-.+.+. +|.+ .|...+.+-||. |++|+.||+|.|||+.+.+.+
T Consensus 244 ~~~~~~~~~~~~v~~k~~~~--~~t~~~~~~----Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~i 312 (476)
T KOG0646|consen 244 NLLFKLSGQSAGVNQKGRHE--ENTQINVLV----GHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCI 312 (476)
T ss_pred eehhcCCccccccccccccc--ccceeeeec----cccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHH
Confidence 7776431 0001111111 000011122 3334 788999999997 678999999999999988743
No 146
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.49 E-value=9.3e-13 Score=147.04 Aligned_cols=252 Identities=13% Similarity=0.138 Sum_probs=150.8
Q ss_pred ceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC--Cccce
Q 003087 12 KQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN--GEEIT 89 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~--g~~~~ 89 (849)
.|+.|+|-|||..|..|.++.+-|+|..++ ....++.. |.+.|.+||||.||++.|||+.|..|-||+.. |-.
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG--~llqtLKg-HKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-- 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDG--TLLQPLKG-HKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-- 88 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCc--cccccccc-ccceEEEEEEccCCceeccCCCceeEEEeccccccee--
Confidence 789999999999999999999999998764 23333322 36789999999999999999999999999864 432
Q ss_pred ecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEc
Q 003087 90 RFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYH 169 (849)
Q Consensus 90 ~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafs 169 (849)
.. .++..|..+.|+|-....+++ +- .-+-+|....... ..+ .....|.+-+|.
T Consensus 89 kY-----SH~D~IQCMsFNP~~h~LasC-------sL-sdFglWS~~qK~V-~K~-------------kss~R~~~CsWt 141 (1081)
T KOG1538|consen 89 KY-----SHNDAIQCMSFNPITHQLASC-------SL-SDFGLWSPEQKSV-SKH-------------KSSSRIICCSWT 141 (1081)
T ss_pred ee-----ccCCeeeEeecCchHHHhhhc-------ch-hhccccChhhhhH-Hhh-------------hhheeEEEeeec
Confidence 21 123579999999944434443 11 1234554332111 100 112358999999
Q ss_pred CCCceEEEEecCCCCccccCCCCCCceeeE----------EEe----cCCcCccc-c--eec-cccceeeccCC------
Q 003087 170 PELSLLSVVSNTDTSSLTSSGNSGPCCISL----------WRR----CHNLELEQ-L--YTT-QIEGLYCEPKG------ 225 (849)
Q Consensus 170 Pdg~lLas~g~d~t~~~~~~~~~G~~~I~l----------W~~----~~~~~~~~-l--~~~-~~~~~~~~~~g------ 225 (849)
.||++||.|-.++|+.+- ++.|.-.+++ |.+ ++++.... + .+. |..++++ ..|
T Consensus 142 nDGqylalG~~nGTIsiR--Nk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~-LsG~~Igk~ 218 (1081)
T KOG1538|consen 142 NDGQYLALGMFNGTISIR--NKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQ-LSGKQIGKD 218 (1081)
T ss_pred CCCcEEEEeccCceEEee--cCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEE-ecceeeccc
Confidence 999999999888864322 2222211222 221 11100000 0 000 0001100 000
Q ss_pred C-ccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-
Q 003087 226 H-EVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI- 303 (849)
Q Consensus 226 ~-~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~- 303 (849)
. ... .-.++++=|+|.++..||.||.++++-.++-+ +.+. ++...+|++|+-.|+++
T Consensus 219 r~L~F-dP~CisYf~NGEy~LiGGsdk~L~~fTR~Gvr--LGTv------------------g~~D~WIWtV~~~PNsQ~ 277 (1081)
T KOG1538|consen 219 RALNF-DPCCISYFTNGEYILLGGSDKQLSLFTRDGVR--LGTV------------------GEQDSWIWTVQAKPNSQY 277 (1081)
T ss_pred ccCCC-CchhheeccCCcEEEEccCCCceEEEeecCeE--Eeec------------------cccceeEEEEEEccCCce
Confidence 0 000 11255556666666666666666666555421 1111 23446899999999886
Q ss_pred EEEEEeCCcEEEEEec
Q 003087 304 LILARKSSIITMIDVL 319 (849)
Q Consensus 304 la~a~~dgti~lwdl~ 319 (849)
+++|..||||.-+++.
T Consensus 278 v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 278 VVVGCQDGTIACYNLI 293 (1081)
T ss_pred EEEEEccCeeehhhhH
Confidence 7789999999877763
No 147
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=2.3e-12 Score=148.20 Aligned_cols=198 Identities=15% Similarity=0.111 Sum_probs=123.8
Q ss_pred cceEEEEEcCCCCeEEEEe----CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEE-eCCC--cEEEEec
Q 003087 11 KKQVSLFISPRGERVAVAA----VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIV-DDTH--TVYFFKA 83 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas----~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~-~~dg--tIrlWd~ 83 (849)
..+.+.+|||||+.||..+ +..|.+|+..++. .. .... ..+.+..++|||||+.||.. +.+| .|++||+
T Consensus 199 ~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~--~~-~l~~-~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~ 274 (429)
T PRK03629 199 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--VR-QVAS-FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 274 (429)
T ss_pred CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC--eE-EccC-CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEEC
Confidence 4678999999999999775 2367788865432 11 1111 12234568999999999965 4455 4889999
Q ss_pred CCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecC--CCCcccccccccCCcceeccccCC
Q 003087 84 NGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQ--DPSASISSASASSSGLTLRRQFPQ 161 (849)
Q Consensus 84 ~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~--~~~~~~~~~~~~~~~~~l~~~~~~ 161 (849)
.+..+.++..+. ..+....|+||+... +++...+|..++|.+.. +..... +.. ..
T Consensus 275 ~tg~~~~lt~~~----~~~~~~~wSPDG~~I------~f~s~~~g~~~Iy~~d~~~g~~~~l----------t~~---~~ 331 (429)
T PRK03629 275 ASGQIRQVTDGR----SNNTEPTWFPDSQNL------AYTSDQAGRPQVYKVNINGGAPQRI----------TWE---GS 331 (429)
T ss_pred CCCCEEEccCCC----CCcCceEECCCCCEE------EEEeCCCCCceEEEEECCCCCeEEe----------ecC---CC
Confidence 876666665432 235567888876421 12223446667775543 222111 111 12
Q ss_pred ceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCC
Q 003087 162 NVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQG 241 (849)
Q Consensus 162 ~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG 241 (849)
.+.+..|||||+.||.++.++ |...|.+|++.++. ...+.. + ......+|||||
T Consensus 332 ~~~~~~~SpDG~~Ia~~~~~~----------g~~~I~~~dl~~g~-~~~Lt~-----------~----~~~~~p~~SpDG 385 (429)
T PRK03629 332 QNQDADVSSDGKFMVMVSSNG----------GQQHIAKQDLATGG-VQVLTD-----------T----FLDETPSIAPNG 385 (429)
T ss_pred CccCEEECCCCCEEEEEEccC----------CCceEEEEECCCCC-eEEeCC-----------C----CCCCCceECCCC
Confidence 356789999999998877654 22247778876642 111110 1 123468899999
Q ss_pred CEEEEEeCCCc---EEEEecCCC
Q 003087 242 KFVATSDTNGC---LYIFEMDKD 261 (849)
Q Consensus 242 ~~LAs~s~Dgt---v~LWd~~~~ 261 (849)
+.|+.++.+|. +.+|++++.
T Consensus 386 ~~i~~~s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 386 TMVIYSSSQGMGSVLNLVSTDGR 408 (429)
T ss_pred CEEEEEEcCCCceEEEEEECCCC
Confidence 99999998875 677888765
No 148
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.48 E-value=6.8e-12 Score=137.10 Aligned_cols=241 Identities=15% Similarity=0.192 Sum_probs=152.1
Q ss_pred cccccceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCc
Q 003087 7 PRKTKKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGE 86 (849)
Q Consensus 7 ~~~~~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~ 86 (849)
+-| +.|.++.|.+||+.|-.-|++.|.||+....+ +.+-..-|.+.|-++.---||++|- |+.|+.|-+||-+=+
T Consensus 244 ~ek-k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~---~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~ 318 (626)
T KOG2106|consen 244 REK-KFVLCVTFLENGDVITGDSGGNILIWSKGTNR---ISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYR 318 (626)
T ss_pred ccc-eEEEEEEEcCCCCEEeecCCceEEEEeCCCce---EEeEeeecCCceEEEEEecCccEee-cCccceEEecccccc
Confidence 445 78999999999998854478999999975321 1111112467899999999999876 999999999984311
Q ss_pred cceecc-cccccccccEEEEE----------------e---c---------C-C---cccccccceeEEEEeCCCcEEEE
Q 003087 87 EITRFT-NKHLKVSLPIIGLI----------------A---Q---------D-E---TDVQRSCLCSFTVFTSDGFLHQI 133 (849)
Q Consensus 87 ~~~~l~-~~~~~~~~~V~~l~----------------f---s---------~-~---~~~~~s~~~~~~~~s~Dg~v~lw 133 (849)
.+..+. +.+. .+|+.|+ + . . + +.+.-...+.+++++.|+++++|
T Consensus 319 k~r~~elPe~~---G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW 395 (626)
T KOG2106|consen 319 KLRETELPEQF---GPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLW 395 (626)
T ss_pred ccccccCchhc---CCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEc
Confidence 111110 1110 1121111 0 0 0 1 01111223568888999999999
Q ss_pred EecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCccccee
Q 003087 134 EISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYT 213 (849)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~ 213 (849)
+ . .+. . |+ ......+.|++|||-| .+|+|...+ .|-+..... +.+.+
T Consensus 396 ~-~-~k~--~---------wt--~~~~d~~~~~~fhpsg-~va~Gt~~G----------------~w~V~d~e~-~~lv~ 442 (626)
T KOG2106|consen 396 N-D-HKL--E---------WT--KIIEDPAECADFHPSG-VVAVGTATG----------------RWFVLDTET-QDLVT 442 (626)
T ss_pred c-C-Cce--e---------EE--EEecCceeEeeccCcc-eEEEeeccc----------------eEEEEeccc-ceeEE
Confidence 8 2 121 1 11 1234468999999999 777765553 355543321 11211
Q ss_pred ccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCc
Q 003087 214 TQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDI 293 (849)
Q Consensus 214 ~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v 293 (849)
.. . ....+..|+|||||.+||.|+.|+.|.|+.++..+....... +-+..++
T Consensus 443 ~~------~-----d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~-----------------k~~gs~i 494 (626)
T KOG2106|consen 443 IH------T-----DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVG-----------------KCSGSPI 494 (626)
T ss_pred EE------e-----cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEee-----------------eecCcee
Confidence 11 1 124788999999999999999999999999987655333321 1122568
Q ss_pred EEEEEecCCEEE-EEEeCCcEEEE
Q 003087 294 TDFAWWSDNILI-LARKSSIITMI 316 (849)
Q Consensus 294 ~~vaws~D~~la-~a~~dgti~lw 316 (849)
..+-||+|++.+ +-+-|-.|-.|
T Consensus 495 thLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 495 THLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred EEeeecCCCceEEeccCceEEEEE
Confidence 889999999854 45667788888
No 149
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.48 E-value=1.7e-12 Score=148.95 Aligned_cols=241 Identities=13% Similarity=0.075 Sum_probs=165.1
Q ss_pred cceEEEEEcCCCC----eEEEEe--CCeEEEEecCCCCCcceeeeeec------CCCCEEEEEECCCCCEEEEEeCCCcE
Q 003087 11 KKQVSLFISPRGE----RVAVAA--VNQVTILQKDDDYQEPCGIFNCT------GLGASIYGAWSESHDVLGIVDDTHTV 78 (849)
Q Consensus 11 ~~v~slafSPdG~----~LAsas--~~~i~iw~~~~~~~~~~~~~~~~------~~~~v~~vafSPDG~~LAs~~~dgtI 78 (849)
..|..++|.-+-+ -++++. +..++-|+.... ..|.+... ....+++|+.|+=|.+-..|.+.|+|
T Consensus 396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~---~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~I 472 (910)
T KOG1539|consen 396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNK---TSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTI 472 (910)
T ss_pred CcceeeecccchhhhhcceeEEecCcceEEEEeccCc---ccccEEecCccccccCcceEEEEEeccCceEEEeccCCeE
Confidence 4556666553321 234443 347888987642 34444421 23578999999999999999999999
Q ss_pred EEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccc
Q 003087 79 YFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQ 158 (849)
Q Consensus 79 rlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (849)
-+++.+.+....-.+....+..+|.+|+..--. ..+.+++.+|.+..|++....... .+.+
T Consensus 473 d~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n-------~~~vsa~~~Gilkfw~f~~k~l~~---------~l~l--- 533 (910)
T KOG1539|consen 473 DRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTN-------RLLVSAGADGILKFWDFKKKVLKK---------SLRL--- 533 (910)
T ss_pred EEEEcccCeeecccccCccccCceeEEEecCCC-------ceEEEccCcceEEEEecCCcceee---------eecc---
Confidence 999998544322222112334678888853211 125566899999999998644211 1111
Q ss_pred cCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEc
Q 003087 159 FPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLIS 238 (849)
Q Consensus 159 ~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafS 238 (849)
...+.++.||-...++|.+ +|+. .|++.|+.+. ...+.+.| |++.|..+.||
T Consensus 534 -~~~~~~iv~hr~s~l~a~~-~ddf------------~I~vvD~~t~------------kvvR~f~g--h~nritd~~FS 585 (910)
T KOG1539|consen 534 -GSSITGIVYHRVSDLLAIA-LDDF------------SIRVVDVVTR------------KVVREFWG--HGNRITDMTFS 585 (910)
T ss_pred -CCCcceeeeeehhhhhhhh-cCce------------eEEEEEchhh------------hhhHHhhc--cccceeeeEeC
Confidence 2358999999999888776 5543 3888887653 12234567 99999999999
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeC-CcEEEE
Q 003087 239 PQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKS-SIITMI 316 (849)
Q Consensus 239 PDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~d-gti~lw 316 (849)
|||++|++++.|++|++||++++.+ +..+. ...++.+++|||.|. ||++..| ..|.+|
T Consensus 586 ~DgrWlisasmD~tIr~wDlpt~~l-ID~~~-------------------vd~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 586 PDGRWLISASMDSTIRTWDLPTGTL-IDGLL-------------------VDSPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred CCCcEEEEeecCCcEEEEeccCcce-eeeEe-------------------cCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence 9999999999999999999998854 33321 124578899999886 7778777 579999
Q ss_pred EecCC
Q 003087 317 DVLSG 321 (849)
Q Consensus 317 dl~~~ 321 (849)
.=.++
T Consensus 646 sNksl 650 (910)
T KOG1539|consen 646 SNKSL 650 (910)
T ss_pred EchhH
Confidence 85443
No 150
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.47 E-value=5.5e-12 Score=142.39 Aligned_cols=122 Identities=20% Similarity=0.258 Sum_probs=90.2
Q ss_pred ccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEE
Q 003087 158 QFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLI 237 (849)
Q Consensus 158 ~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vaf 237 (849)
+|.-.|+.++|||||++|+++|.|+| +++|........+. . |...+. |+.-|+..+|
T Consensus 570 ~HsLTVT~l~FSpdg~~LLsvsRDRt-------------~sl~~~~~~~~~e~--~------fa~~k~--HtRIIWdcsW 626 (764)
T KOG1063|consen 570 GHSLTVTRLAFSPDGRYLLSVSRDRT-------------VSLYEVQEDIKDEF--R------FACLKA--HTRIIWDCSW 626 (764)
T ss_pred ccceEEEEEEECCCCcEEEEeecCce-------------EEeeeeecccchhh--h------hccccc--cceEEEEccc
Confidence 34557999999999999999999985 78898855421111 0 111234 8899999999
Q ss_pred ccCCCEEEEEeCCCcEEEEecCCCc--ccccccccccccccccccccCCCCCCCCCCcEEEEEec-CC-----EEEEEEe
Q 003087 238 SPQGKFVATSDTNGCLYIFEMDKDN--FSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWS-DN-----ILILARK 309 (849)
Q Consensus 238 SPDG~~LAs~s~Dgtv~LWd~~~~~--~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~-D~-----~la~a~~ 309 (849)
|||++++||+|.|.+|++|..+.++ . +..+.. -++...|..|+|-| ++ -+++|-.
T Consensus 627 ~pde~~FaTaSRDK~VkVW~~~~~~d~~-i~~~a~----------------~~~~~aVTAv~~~~~~~~e~~~~vavGle 689 (764)
T KOG1063|consen 627 SPDEKYFATASRDKKVKVWEEPDLRDKY-ISRFAC----------------LKFSLAVTAVAYLPVDHNEKGDVVAVGLE 689 (764)
T ss_pred CcccceeEEecCCceEEEEeccCchhhh-hhhhch----------------hccCCceeeEEeeccccccccceEEEEec
Confidence 9999999999999999999998762 2 112111 12345688888887 32 2578889
Q ss_pred CCcEEEEEec
Q 003087 310 SSIITMIDVL 319 (849)
Q Consensus 310 dgti~lwdl~ 319 (849)
.|.|-||..+
T Consensus 690 ~GeI~l~~~~ 699 (764)
T KOG1063|consen 690 KGEIVLWRRK 699 (764)
T ss_pred ccEEEEEecc
Confidence 9999999976
No 151
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=3e-12 Score=147.27 Aligned_cols=212 Identities=13% Similarity=0.085 Sum_probs=128.4
Q ss_pred CeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCC---CcEEEEecCCccceecccccccccccEEEEEe
Q 003087 31 NQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDT---HTVYFFKANGEEITRFTNKHLKVSLPIIGLIA 107 (849)
Q Consensus 31 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~d---gtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~f 107 (849)
..|.|||.++... ..++ .+...+.+.+|||||+.||.++.+ .+|++||+.+.....+.... .....++|
T Consensus 184 ~~i~i~d~dg~~~---~~lt-~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~----g~~~~~~w 255 (429)
T PRK01742 184 YEVRVADYDGFNQ---FIVN-RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR----GHNGAPAF 255 (429)
T ss_pred EEEEEECCCCCCc---eEec-cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC----CccCceeE
Confidence 4788888654221 1222 234568899999999999988654 47999999754323332111 12235788
Q ss_pred cCCcccccccceeEEEEeCCCcEEEEEecC--CCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCc
Q 003087 108 QDETDVQRSCLCSFTVFTSDGFLHQIEISQ--DPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSS 185 (849)
Q Consensus 108 s~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~ 185 (849)
+||+.... ++.+.+|.+.+|.+.. +... .+.++ ...+.+++|||||+.|+.++..+
T Consensus 256 SPDG~~La------~~~~~~g~~~Iy~~d~~~~~~~------------~lt~~-~~~~~~~~wSpDG~~i~f~s~~~--- 313 (429)
T PRK01742 256 SPDGSRLA------FASSKDGVLNIYVMGANGGTPS------------QLTSG-AGNNTEPSWSPDGQSILFTSDRS--- 313 (429)
T ss_pred CCCCCEEE------EEEecCCcEEEEEEECCCCCeE------------eeccC-CCCcCCEEECCCCCEEEEEECCC---
Confidence 88764321 2235688887775543 2221 12222 33478899999999888766432
Q ss_pred cccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccc
Q 003087 186 LTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSL 265 (849)
Q Consensus 186 ~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l 265 (849)
|. ..+|+++.......+. + +.. ...+|||||+.||.++.++.+ +||+.++..
T Consensus 314 -------g~--~~I~~~~~~~~~~~~l------------~--~~~--~~~~~SpDG~~ia~~~~~~i~-~~Dl~~g~~-- 365 (429)
T PRK01742 314 -------GS--PQVYRMSASGGGASLV------------G--GRG--YSAQISADGKTLVMINGDNVV-KQDLTSGST-- 365 (429)
T ss_pred -------CC--ceEEEEECCCCCeEEe------------c--CCC--CCccCCCCCCEEEEEcCCCEE-EEECCCCCe--
Confidence 22 5778775421100110 1 222 457899999999998887655 589887633
Q ss_pred cccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEec
Q 003087 266 SKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVL 319 (849)
Q Consensus 266 ~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~ 319 (849)
..+.. . ....+++|+|||. ++.++.+|.+.+|.+.
T Consensus 366 ~~lt~-----------------~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 366 EVLSS-----------------T--FLDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred EEecC-----------------C--CCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 12110 0 0123467999996 5667788988888864
No 152
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=6e-12 Score=130.62 Aligned_cols=230 Identities=13% Similarity=0.106 Sum_probs=145.4
Q ss_pred CCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEE
Q 003087 53 GLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLH 131 (849)
Q Consensus 53 ~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~ 131 (849)
|.+-|++|.|-+-|+.+|+++.|++|+|||.+ +..-..++.+=..+.++|+.|++.+.. +...++++++|+++.
T Consensus 12 h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPE-----fGqvvA~cS~Drtv~ 86 (361)
T KOG2445|consen 12 HKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPE-----FGQVVATCSYDRTVS 86 (361)
T ss_pred CcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCcc-----ccceEEEEecCCcee
Confidence 35668999999999999999999999999953 332233332211234679999984311 111367889999999
Q ss_pred EEEecCCCCcccccccccCCcceeccccCCceEEEEEcCC--CceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcc
Q 003087 132 QIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPE--LSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELE 209 (849)
Q Consensus 132 lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPd--g~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~ 209 (849)
+|.=...... ..+..+ ....++. .....|..|.|.|. |..||+++.|++ ||+++.-...++.
T Consensus 87 iWEE~~~~~~-~~~~~W-v~~ttl~-DsrssV~DV~FaP~hlGLklA~~~aDG~-------------lRIYEA~dp~nLs 150 (361)
T KOG2445|consen 87 IWEEQEKSEE-AHGRRW-VRRTTLV-DSRSSVTDVKFAPKHLGLKLAAASADGI-------------LRIYEAPDPMNLS 150 (361)
T ss_pred eeeecccccc-ccccee-EEEEEee-cCCcceeEEEecchhcceEEEEeccCcE-------------EEEEecCCccccc
Confidence 9985321110 000000 0011222 22346999999995 678999999984 7787765544333
Q ss_pred cceeccc--cceeeccCCCccccccceEEEcc---CCCEEEEEeCC-----CcEEEEecCCCcccccccccccccccccc
Q 003087 210 QLYTTQI--EGLYCEPKGHEVQLAHPKVLISP---QGKFVATSDTN-----GCLYIFEMDKDNFSLSKFACGERFDLQVA 279 (849)
Q Consensus 210 ~l~~~~~--~~~~~~~~g~~h~~~V~~vafSP---DG~~LAs~s~D-----gtv~LWd~~~~~~~l~~~~~~~~~~~~~~ 279 (849)
+- ..+. -.++..+.. +.....+|+|+| .-++||.|+.+ +.+.||.-..... +|..-
T Consensus 151 ~W-~Lq~Ei~~~~~pp~~--~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~r---Kw~kv-------- 216 (361)
T KOG2445|consen 151 QW-TLQHEIQNVIDPPGK--NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGR---KWLKV-------- 216 (361)
T ss_pred cc-hhhhhhhhccCCccc--ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcc---eeeee--------
Confidence 21 0010 011112222 456778999997 34668877766 5899998876532 33210
Q ss_pred cccCCCCCCCCCCcEEEEEecC-C----EEEEEEeCCcEEEEEecCCc
Q 003087 280 DSLFDGRTKPISDITDFAWWSD-N----ILILARKSSIITMIDVLSGL 322 (849)
Q Consensus 280 ~~l~~~~~~~~~~v~~vaws~D-~----~la~a~~dgti~lwdl~~~~ 322 (849)
+.|. ++..+|.+|+|.|. | .||+|+.|| |+||.+...+
T Consensus 217 a~L~----d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~ 259 (361)
T KOG2445|consen 217 AELP----DHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVAR 259 (361)
T ss_pred hhcC----CCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeecc
Confidence 0122 46688999999996 3 388999999 9999998644
No 153
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.46 E-value=1.7e-12 Score=148.94 Aligned_cols=196 Identities=15% Similarity=0.214 Sum_probs=143.8
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeee--ecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCcc
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFN--CTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEE 87 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~--~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~ 87 (849)
..+.+|+.|+=|+....|+ .|+|.+++...+ ...+.+. +.+...|+.||----++.++|++.+|.+++||..++.
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG--i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~ 526 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSG--IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV 526 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccC--eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc
Confidence 5689999999999999985 689999997543 3334442 2236789999988778889999999999999998655
Q ss_pred ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEE
Q 003087 88 ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTD 167 (849)
Q Consensus 88 ~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sva 167 (849)
+. +.......+..+..+-.... ++++-.|=.|+++|+.+.+..+. |. +|.+.|++++
T Consensus 527 l~----~~l~l~~~~~~iv~hr~s~l-------~a~~~ddf~I~vvD~~t~kvvR~-----------f~-gh~nritd~~ 583 (910)
T KOG1539|consen 527 LK----KSLRLGSSITGIVYHRVSDL-------LAIALDDFSIRVVDVVTRKVVRE-----------FW-GHGNRITDMT 583 (910)
T ss_pred ee----eeeccCCCcceeeeeehhhh-------hhhhcCceeEEEEEchhhhhhHH-----------hh-ccccceeeeE
Confidence 21 22233345555555432221 34446777899999987666544 33 4567799999
Q ss_pred EcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEE
Q 003087 168 YHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATS 247 (849)
Q Consensus 168 fsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~ 247 (849)
|||||++|++++-|+ +|++||+-++..+ +++. -..+..+|+|||.|.+|||+
T Consensus 584 FS~DgrWlisasmD~-------------tIr~wDlpt~~lI--------D~~~-------vd~~~~sls~SPngD~LAT~ 635 (910)
T KOG1539|consen 584 FSPDGRWLISASMDS-------------TIRTWDLPTGTLI--------DGLL-------VDSPCTSLSFSPNGDFLATV 635 (910)
T ss_pred eCCCCcEEEEeecCC-------------cEEEEeccCccee--------eeEe-------cCCcceeeEECCCCCEEEEE
Confidence 999999999999986 3999999775211 1111 23577899999999999999
Q ss_pred eCC-CcEEEEecC
Q 003087 248 DTN-GCLYIFEMD 259 (849)
Q Consensus 248 s~D-gtv~LWd~~ 259 (849)
+.| .-|.||.=.
T Consensus 636 Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 636 HVDQNGIYLWSNK 648 (910)
T ss_pred EecCceEEEEEch
Confidence 999 789999544
No 154
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.46 E-value=3.6e-12 Score=143.49 Aligned_cols=229 Identities=15% Similarity=0.167 Sum_probs=157.2
Q ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEecCCccceecccccccccccEEEEEecC-C--cccccccceeEEEEeCCCcEE
Q 003087 55 GASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQD-E--TDVQRSCLCSFTVFTSDGFLH 131 (849)
Q Consensus 55 ~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~-~--~~~~~s~~~~~~~~s~Dg~v~ 131 (849)
-.|++|+.||||+.||+|+.-|++||+++..-+.......| .+-|.++-|+. + ... +++++.|..||
T Consensus 460 ~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAH---esEilcLeyS~p~~~~kL-------LASasrdRlIH 529 (1080)
T KOG1408|consen 460 FGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAH---ESEILCLEYSFPVLTNKL-------LASASRDRLIH 529 (1080)
T ss_pred cceEEEEECCCcceecccCccCceEEEEehhhhhhhheecc---cceeEEEeecCchhhhHh-------hhhccCCceEE
Confidence 46899999999999999999999999999743323222333 35689999964 2 233 34458999999
Q ss_pred EEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCC--ceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcc
Q 003087 132 QIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPEL--SLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELE 209 (849)
Q Consensus 132 lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg--~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~ 209 (849)
++|+...-.. ..++- +|...|++|.|--.| ...++.|.|+. ..++.+....-.
T Consensus 530 V~Dv~rny~l----------~qtld-~HSssITsvKFa~~gln~~MiscGADks--------------imFr~~qk~~~g 584 (1080)
T KOG1408|consen 530 VYDVKRNYDL----------VQTLD-GHSSSITSVKFACNGLNRKMISCGADKS--------------IMFRVNQKASSG 584 (1080)
T ss_pred EEecccccch----------hhhhc-ccccceeEEEEeecCCceEEEeccCchh--------------hheehhccccCc
Confidence 9999754321 11333 446679999999888 66678888862 123333210000
Q ss_pred cceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCC
Q 003087 210 QLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKP 289 (849)
Q Consensus 210 ~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 289 (849)
.++. ....+. ....++.|+.-|..++++++..|..|+|+++.+++. .+.|.... ++
T Consensus 585 ~~f~-r~t~t~-------~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq-~k~FKgs~---------------~~ 640 (1080)
T KOG1408|consen 585 RLFP-RHTQTL-------SKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ-VKSFKGSR---------------DH 640 (1080)
T ss_pred eecc-cccccc-------ccceEEEeeeCCCcceEEEEecccceEEEeccccce-eeeecccc---------------cC
Confidence 1100 000000 124788999999999999999999999999998854 55665321 23
Q ss_pred CCCcEEEEEecCCE-EEEEEeCCcEEEEEecCCccc---cccCCCCCCeEEEEEecc
Q 003087 290 ISDITDFAWWSDNI-LILARKSSIITMIDVLSGLKV---KETDPKLRGHVFLLESKS 342 (849)
Q Consensus 290 ~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~~~l---~~~~~~~~g~~~~Le~~~ 342 (849)
.+...-|.--|-|. +|....|.++-++|..+|+.+ ++|+-++.|-.|.=+|+.
T Consensus 641 eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkH 697 (1080)
T KOG1408|consen 641 EGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKH 697 (1080)
T ss_pred CCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchh
Confidence 34566676667776 455567899999999999854 588888899888877764
No 155
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=2.1e-12 Score=139.95 Aligned_cols=207 Identities=13% Similarity=0.159 Sum_probs=151.4
Q ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEE
Q 003087 54 LGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQI 133 (849)
Q Consensus 54 ~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw 133 (849)
++.|++|.|.|.-++|.+|+.||+++|+.++|+.-..+..-+.. .++|....|.|++.. .+++.|....+.+|
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~-~fPi~~a~f~p~G~~------~i~~s~rrky~ysy 285 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLE-KFPIQKAEFAPNGHS------VIFTSGRRKYLYSY 285 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeec-cCccceeeecCCCce------EEEecccceEEEEe
Confidence 67899999999999999999999999999999864444333332 367888899886542 24555788889999
Q ss_pred EecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCccccee
Q 003087 134 EISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYT 213 (849)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~ 213 (849)
|+.+++...+ ..+.|+-...+..+..||||++||.+|..+ .|.+-...++ +.|.+
T Consensus 286 Dle~ak~~k~---------~~~~g~e~~~~e~FeVShd~~fia~~G~~G-------------~I~lLhakT~---eli~s 340 (514)
T KOG2055|consen 286 DLETAKVTKL---------KPPYGVEEKSMERFEVSHDSNFIAIAGNNG-------------HIHLLHAKTK---ELITS 340 (514)
T ss_pred eccccccccc---------cCCCCcccchhheeEecCCCCeEEEcccCc-------------eEEeehhhhh---hhhhe
Confidence 9987765433 112233334688999999999999999886 3666555443 22222
Q ss_pred ccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCc
Q 003087 214 TQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDI 293 (849)
Q Consensus 214 ~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v 293 (849)
.. . .+.|..+.||.||+.|.+.+.+|.|.+||+....+ +..|...+ .. .-
T Consensus 341 ~K-------i-----eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~-~~rf~D~G----------------~v-~g 390 (514)
T KOG2055|consen 341 FK-------I-----EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSC-LHRFVDDG----------------SV-HG 390 (514)
T ss_pred ee-------e-----ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcce-EEEEeecC----------------cc-ce
Confidence 21 1 23788999999999999999999999999998755 66765211 11 12
Q ss_pred EEEEEecCCE-EEEEEeCCcEEEEEecCCc
Q 003087 294 TDFAWWSDNI-LILARKSSIITMIDVLSGL 322 (849)
Q Consensus 294 ~~vaws~D~~-la~a~~dgti~lwdl~~~~ 322 (849)
.+++-|++|. +|+|+..|-|.|||..+-.
T Consensus 391 ts~~~S~ng~ylA~GS~~GiVNIYd~~s~~ 420 (514)
T KOG2055|consen 391 TSLCISLNGSYLATGSDSGIVNIYDGNSCF 420 (514)
T ss_pred eeeeecCCCceEEeccCcceEEEeccchhh
Confidence 4577778876 7889999999999976543
No 156
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.45 E-value=4e-11 Score=131.80 Aligned_cols=263 Identities=16% Similarity=0.206 Sum_probs=172.5
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEE-CCCCC-EEEEEeC-CCcEEEEecC
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAW-SESHD-VLGIVDD-THTVYFFKAN 84 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vaf-SPDG~-~LAs~~~-dgtIrlWd~~ 84 (849)
....+..+.|+++|..++.++ ++.+.+|+..... .....+.......+..+.+ ++++. +++..+. |+++++|+..
T Consensus 64 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 142 (466)
T COG2319 64 HEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLS 142 (466)
T ss_pred ccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEec
Confidence 447899999999999999887 7899999976432 0222222111125777777 99999 5665455 9999999998
Q ss_pred C--ccceecccccccccccEEEEEecCCcccccccceeEEEEeC-CCcEEEEEecCCCCcccccccccCCcceeccccCC
Q 003087 85 G--EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTS-DGFLHQIEISQDPSASISSASASSSGLTLRRQFPQ 161 (849)
Q Consensus 85 g--~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~-Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (849)
+ .....+..+. ..|..+.|+|++.. +++.+. |+++++|++..+..... +. +|..
T Consensus 143 ~~~~~~~~~~~~~----~~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-----------~~-~~~~ 199 (466)
T COG2319 143 TPGKLIRTLEGHS----ESVTSLAFSPDGKL-------LASGSSLDGTIKLWDLRTGKPLST-----------LA-GHTD 199 (466)
T ss_pred CCCeEEEEEecCc----ccEEEEEECCCCCE-------EEecCCCCCceEEEEcCCCceEEe-----------ec-cCCC
Confidence 6 4444443332 46778999886642 333354 99999999986443322 22 2456
Q ss_pred ceEEEEEcCCCc-eEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccC
Q 003087 162 NVICTDYHPELS-LLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQ 240 (849)
Q Consensus 162 ~V~svafsPdg~-lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPD 240 (849)
.|.+++|+|+|. .+++++.|+ .|++|+...+. .+.. ...+ |...+ -..|+|+
T Consensus 200 ~v~~~~~~~~~~~~~~~~~~d~-------------~i~~wd~~~~~---~~~~--------~~~~--~~~~~-~~~~~~~ 252 (466)
T COG2319 200 PVSSLAFSPDGGLLIASGSSDG-------------TIRLWDLSTGK---LLRS--------TLSG--HSDSV-VSSFSPD 252 (466)
T ss_pred ceEEEEEcCCcceEEEEecCCC-------------cEEEEECCCCc---EEee--------ecCC--CCcce-eEeECCC
Confidence 799999999998 544435665 27899655221 1110 1223 54554 3389999
Q ss_pred CCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCC-EEEEEEeCCcEEEEEec
Q 003087 241 GKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDN-ILILARKSSIITMIDVL 319 (849)
Q Consensus 241 G~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~-~la~a~~dgti~lwdl~ 319 (849)
|.++++++.|+.+++|++......+... ..|...+..+.|.|++ .+++++.|+.+.+|++.
T Consensus 253 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~------------------~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~ 314 (466)
T COG2319 253 GSLLASGSSDGTIRLWDLRSSSSLLRTL------------------SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLE 314 (466)
T ss_pred CCEEEEecCCCcEEEeeecCCCcEEEEE------------------ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcC
Confidence 9999999999999999998653211111 0234568889999955 46668888999999888
Q ss_pred CCccccccC-CCCCCeEEEEEe
Q 003087 320 SGLKVKETD-PKLRGHVFLLES 340 (849)
Q Consensus 320 ~~~~l~~~~-~~~~g~~~~Le~ 340 (849)
++....... ..|.+.+..+..
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~ 336 (466)
T COG2319 315 TGKLLSSLTLKGHEGPVSSLSF 336 (466)
T ss_pred CCceEEEeeecccCCceEEEEE
Confidence 776443222 234444444444
No 157
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=9.7e-12 Score=144.30 Aligned_cols=280 Identities=12% Similarity=0.123 Sum_probs=165.7
Q ss_pred cceEEEEEcCCCCeEEEE-eCCeEEEEecCC--CCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCcc
Q 003087 11 KKQVSLFISPRGERVAVA-AVNQVTILQKDD--DYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEE 87 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsa-s~~~i~iw~~~~--~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~ 87 (849)
..+..+++||+|+++|+| ++|+|.+|..-. +....+..+.- |++.|.+++||+||.+|-||+..|.+-+|.+..+.
T Consensus 206 f~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW-H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 206 FNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW-HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK 284 (792)
T ss_pred ccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe-cccccceeEEecCCceEeecccceEEEEEeecCCC
Confidence 346789999999999999 479999996432 11111111212 36889999999999999999999999999987444
Q ss_pred ceecccccccccccEEEEEecCCccccc--cccee--------------------------------------------E
Q 003087 88 ITRFTNKHLKVSLPIIGLIAQDETDVQR--SCLCS--------------------------------------------F 121 (849)
Q Consensus 88 ~~~l~~~~~~~~~~V~~l~fs~~~~~~~--s~~~~--------------------------------------------~ 121 (849)
.++.+.. +++|..+++|||+.... -.|++ .
T Consensus 285 -kqfLPRL---gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~ 360 (792)
T KOG1963|consen 285 -KQFLPRL---GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSL 360 (792)
T ss_pred -ccccccc---CCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCce
Confidence 3444432 36788888887653211 00111 1
Q ss_pred EEEeCCCcEEEEEecCCCCcccccccccCCccee-ccccCCceEEEEEcCCCceEEEEecCCCCccc-cCCCCCCceeeE
Q 003087 122 TVFTSDGFLHQIEISQDPSASISSASASSSGLTL-RRQFPQNVICTDYHPELSLLSVVSNTDTSSLT-SSGNSGPCCISL 199 (849)
Q Consensus 122 ~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~V~svafsPdg~lLas~g~d~t~~~~-~~~~~G~~~I~l 199 (849)
+..+..|.|+.||+.++....-+. +......- .+.+..+|.+++++-.|+.+|++--- +. ..-..|...+++
T Consensus 361 vln~~~g~vQ~ydl~td~~i~~~~--v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~----~d~~~~~~~e~~LKF 434 (792)
T KOG1963|consen 361 VLNGHPGHVQFYDLYTDSTIYKLQ--VCDENYSDGDVNIQVGITAVARSRFGSWMATLEAR----IDKFNFFDGEVSLKF 434 (792)
T ss_pred eecCCCceEEEEeccccceeeeEE--EEeecccCCcceeEEeeeeehhhccceEEEEeeee----ehhhhccCceEEEEE
Confidence 112334455555554443321111 00000000 00112358888999999988875311 11 112224456899
Q ss_pred EEecCCcCcccceeccccceeeccCCCccccccceEEEccC-CC-EEEEEeCCCcEEEEecCCCccc---cccccccccc
Q 003087 200 WRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQ-GK-FVATSDTNGCLYIFEMDKDNFS---LSKFACGERF 274 (849)
Q Consensus 200 W~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPD-G~-~LAs~s~Dgtv~LWd~~~~~~~---l~~~~~~~~~ 274 (849)
|..++...--.+ ... + ... |...+....|.+- .. ..+|+|.||.++||-+.+..-. -..|.+....
T Consensus 435 W~~n~~~kt~~L-~T~----I--~~P--H~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~ 505 (792)
T KOG1963|consen 435 WQYNPNSKTFIL-NTK----I--NNP--HGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIG 505 (792)
T ss_pred EEEcCCcceeEE-EEE----E--ecC--CCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeee
Confidence 998875210001 100 0 112 6665555555432 22 7999999999999998433210 0234443322
Q ss_pred ccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecCCc
Q 003087 275 DLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSGL 322 (849)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~~~ 322 (849)
.+ +..++...+|+.||.++..+.+++|.|||-.+..
T Consensus 506 sy------------~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~ 541 (792)
T KOG1963|consen 506 SY------------HKTPITALCFSQDGSLLAVSFDDTITIWDYDTKN 541 (792)
T ss_pred cc------------ccCcccchhhcCCCcEEEEecCCEEEEecCCChh
Confidence 11 2345777899999999999999999999988754
No 158
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.44 E-value=4.3e-11 Score=132.77 Aligned_cols=249 Identities=10% Similarity=0.068 Sum_probs=143.0
Q ss_pred eEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEE-eCCCcEEEEecCC-ccceeccccccccccc
Q 003087 24 RVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIV-DDTHTVYFFKANG-EEITRFTNKHLKVSLP 101 (849)
Q Consensus 24 ~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~-~~dgtIrlWd~~g-~~~~~l~~~~~~~~~~ 101 (849)
|+|.+.+++|.+|+.... +.+.........+....++|||||++|.++ ..++.|.+|++++ ..+....... ....
T Consensus 5 y~~~~~~~~I~~~~~~~~-g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~--~~~~ 81 (330)
T PRK11028 5 YIASPESQQIHVWNLNHE-GALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP--LPGS 81 (330)
T ss_pred EEEcCCCCCEEEEEECCC-CceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec--CCCC
Confidence 344445789999998532 222111111123456789999999998765 4588999999862 2222221111 1123
Q ss_pred EEEEEecCCcccccccceeEEEEe-CCCcEEEEEecCCCCc-ccccccccCCcceeccccCCceEEEEEcCCCceEEEEe
Q 003087 102 IIGLIAQDETDVQRSCLCSFTVFT-SDGFLHQIEISQDPSA-SISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVS 179 (849)
Q Consensus 102 V~~l~fs~~~~~~~s~~~~~~~~s-~Dg~v~lw~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g 179 (849)
...++|+|++.. +++++ .+|.|.+|++.+++.. .... .+.+ .....+++|+|||+.+++++
T Consensus 82 p~~i~~~~~g~~-------l~v~~~~~~~v~v~~~~~~g~~~~~~~--------~~~~--~~~~~~~~~~p~g~~l~v~~ 144 (330)
T PRK11028 82 PTHISTDHQGRF-------LFSASYNANCVSVSPLDKDGIPVAPIQ--------IIEG--LEGCHSANIDPDNRTLWVPC 144 (330)
T ss_pred ceEEEECCCCCE-------EEEEEcCCCeEEEEEECCCCCCCCcee--------eccC--CCcccEeEeCCCCCEEEEee
Confidence 467899886643 33333 4899999999754321 1110 1111 12367789999999997765
Q ss_pred cCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeC-CCcEEEEec
Q 003087 180 NTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDT-NGCLYIFEM 258 (849)
Q Consensus 180 ~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~-Dgtv~LWd~ 258 (849)
... + .|++|+++....+..... .....+.| .+...++|+|||++|++++. +++|.+|++
T Consensus 145 ~~~----------~--~v~v~d~~~~g~l~~~~~----~~~~~~~g----~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~ 204 (330)
T PRK11028 145 LKE----------D--RIRLFTLSDDGHLVAQEP----AEVTTVEG----AGPRHMVFHPNQQYAYCVNELNSSVDVWQL 204 (330)
T ss_pred CCC----------C--EEEEEEECCCCcccccCC----CceecCCC----CCCceEEECCCCCEEEEEecCCCEEEEEEE
Confidence 443 2 489999975311110000 00111112 34568999999999988876 999999999
Q ss_pred CCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEE-EeCCcEEEEEecCC
Q 003087 259 DKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILA-RKSSIITMIDVLSG 321 (849)
Q Consensus 259 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a-~~dgti~lwdl~~~ 321 (849)
+...-.+..... .. ..|..........++.++|||+ +.++ ..+++|.+|++...
T Consensus 205 ~~~~~~~~~~~~----~~-----~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 205 KDPHGEIECVQT----LD-----MMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred eCCCCCEEEEEE----Ee-----cCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence 732101111110 00 0011001112345789999997 4444 35789999999643
No 159
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.44 E-value=7.7e-12 Score=130.78 Aligned_cols=263 Identities=13% Similarity=0.149 Sum_probs=169.8
Q ss_pred cceEEEEEcC-----CCCeEEEEeCCeEEEEecCCCCC-cceeeeeecC-CCCEEEEEECCCCC----EEEEEeCCCcEE
Q 003087 11 KKQVSLFISP-----RGERVAVAAVNQVTILQKDDDYQ-EPCGIFNCTG-LGASIYGAWSESHD----VLGIVDDTHTVY 79 (849)
Q Consensus 11 ~~v~slafSP-----dG~~LAsas~~~i~iw~~~~~~~-~~~~~~~~~~-~~~v~~vafSPDG~----~LAs~~~dgtIr 79 (849)
.++..++|.+ .-+.+|+++.+.++|.....+.+ ..+..+...+ ....-.++|+-|-. +||.|+.-|.||
T Consensus 39 ~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIr 118 (385)
T KOG1034|consen 39 KPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIR 118 (385)
T ss_pred CccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEE
Confidence 5688888873 34677888889999998654321 1111111122 34567899998765 799999999999
Q ss_pred EEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceecccc
Q 003087 80 FFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQF 159 (849)
Q Consensus 80 lWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (849)
|+|+...++..-..+| ..+|..+.|.|+... -+.++|.|.+||+|+++++.+..++. -.. +|
T Consensus 119 Vid~~~~~~~~~~~gh---G~sINeik~~p~~~q------lvls~SkD~svRlwnI~~~~Cv~VfG--------G~e-gH 180 (385)
T KOG1034|consen 119 VIDVVSGQCSKNYRGH---GGSINEIKFHPDRPQ------LVLSASKDHSVRLWNIQTDVCVAVFG--------GVE-GH 180 (385)
T ss_pred EEecchhhhccceecc---CccchhhhcCCCCCc------EEEEecCCceEEEEeccCCeEEEEec--------ccc-cc
Confidence 9999754433322333 357889999885421 25567999999999999988876654 112 45
Q ss_pred CCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCC----------------------------cCc---
Q 003087 160 PQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHN----------------------------LEL--- 208 (849)
Q Consensus 160 ~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~----------------------------~~~--- 208 (849)
...|.+|+||++|..+||+|-|-+ |++|++... +++
T Consensus 181 rdeVLSvD~~~~gd~i~ScGmDhs-------------lk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~ 247 (385)
T KOG1034|consen 181 RDEVLSVDFSLDGDRIASCGMDHS-------------LKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTT 247 (385)
T ss_pred cCcEEEEEEcCCCCeeeccCCcce-------------EEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccc
Confidence 567999999999999999998863 777776521 000
Q ss_pred --------------ccceeccccceee--cc-------------CCC--------ccccccceE--EEccCCCEEEEEeC
Q 003087 209 --------------EQLYTTQIEGLYC--EP-------------KGH--------EVQLAHPKV--LISPQGKFVATSDT 249 (849)
Q Consensus 209 --------------~~l~~~~~~~~~~--~~-------------~g~--------~h~~~V~~v--afSPDG~~LAs~s~ 249 (849)
..+++-.+++-+. +| ... ...-.||-| +|-|-++.||.|..
T Consensus 248 diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq 327 (385)
T KOG1034|consen 248 DIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQ 327 (385)
T ss_pred ccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccC
Confidence 0000000111100 01 000 011234444 55677999999999
Q ss_pred CCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEE-EEEeCCcEEEEEec
Q 003087 250 NGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILI-LARKSSIITMIDVL 319 (849)
Q Consensus 250 Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la-~a~~dgti~lwdl~ 319 (849)
.|+|.+||+.+.... ++-+ ++.. .....|...+||-||.++ ....||+|.-||.-
T Consensus 328 ~g~v~vwdL~~~ep~-~~tt------------l~~s--~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 328 SGKVYVWDLDNNEPP-KCTT------------LTHS--KSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CCcEEEEECCCCCCc-cCce------------EEec--cccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 999999999976431 1111 1111 223568899999999754 56789999999864
No 160
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.44 E-value=6.6e-12 Score=136.77 Aligned_cols=243 Identities=13% Similarity=0.128 Sum_probs=165.2
Q ss_pred ceEEEEEcCCCCeEEEEe---CCeEEEEecCCCCCcceeeee-ecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCcc
Q 003087 12 KQVSLFISPRGERVAVAA---VNQVTILQKDDDYQEPCGIFN-CTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEE 87 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas---~~~i~iw~~~~~~~~~~~~~~-~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~ 87 (849)
.+.++.|+.+.. |++++ |..|+||...+..+. +.... ..+. .-.||+-.....++++|+..|+|+|||+..+.
T Consensus 36 g~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~-Vp~~~k~~gd-~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl 112 (673)
T KOG4378|consen 36 GDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPE-VPRVRKLTGD-NAFCVACASQSLYEISGGQSGCVKIWDLRAKL 112 (673)
T ss_pred cceeeeccccce-EEEeecCCceeEEEecccCCCCc-cceeeccccc-hHHHHhhhhcceeeeccCcCceeeehhhHHHH
Confidence 388899998776 54543 457889976543111 11111 1122 22344444444999999999999999999887
Q ss_pred ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEE
Q 003087 88 ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTD 167 (849)
Q Consensus 88 ~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sva 167 (849)
+.+....|. +.|.+|.+.- .++++++.+..|-|.+-.+.++..... |.-...+.|.-+.
T Consensus 113 ~hr~lkdh~---stvt~v~YN~-------~DeyiAsvs~gGdiiih~~~t~~~tt~-----------f~~~sgqsvRll~ 171 (673)
T KOG4378|consen 113 IHRFLKDHQ---STVTYVDYNN-------TDEYIASVSDGGDIIIHGTKTKQKTTT-----------FTIDSGQSVRLLR 171 (673)
T ss_pred HhhhccCCc---ceeEEEEecC-------CcceeEEeccCCcEEEEecccCccccc-----------eecCCCCeEEEee
Confidence 777766553 6899999843 134677778888898888876554322 2211123588999
Q ss_pred EcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCC-CEEEE
Q 003087 168 YHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQG-KFVAT 246 (849)
Q Consensus 168 fsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG-~~LAs 246 (849)
|||-.+.|.+..+|+ | .|.+||+.+.. ++... .+. |..+...|.|||-. .+|||
T Consensus 172 ys~skr~lL~~asd~----------G--~VtlwDv~g~s---p~~~~--------~~~--HsAP~~gicfspsne~l~vs 226 (673)
T KOG4378|consen 172 YSPSKRFLLSIASDK----------G--AVTLWDVQGMS---PIFHA--------SEA--HSAPCRGICFSPSNEALLVS 226 (673)
T ss_pred cccccceeeEeeccC----------C--eEEEEeccCCC---cccch--------hhh--ccCCcCcceecCCccceEEE
Confidence 999988765544443 3 38999998852 22211 112 77889999999954 67899
Q ss_pred EeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecCCcc
Q 003087 247 SDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVLSGLK 323 (849)
Q Consensus 247 ~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~~~ 323 (849)
.|.|..|.|+|+..... ..++. ...+...|+|+++|. |++|...|.|.-||+...+.
T Consensus 227 VG~Dkki~~yD~~s~~s-~~~l~-------------------y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 227 VGYDKKINIYDIRSQAS-TDRLT-------------------YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred ecccceEEEeecccccc-cceee-------------------ecCCcceeeecCCceEEEeecCCceEEEEecccCCC
Confidence 99999999999986532 23332 114578899999997 56778999999999988764
No 161
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.44 E-value=5e-12 Score=131.58 Aligned_cols=198 Identities=16% Similarity=0.138 Sum_probs=143.0
Q ss_pred CCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEE
Q 003087 53 GLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLH 131 (849)
Q Consensus 53 ~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~ 131 (849)
|.+.+++||-| |.++||||.|.||+|+|.. -.++..+..| ...|.++.|.++...+ ++.+++.||.|.
T Consensus 42 H~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~H----agsitaL~F~~~~S~s-----hLlS~sdDG~i~ 110 (362)
T KOG0294|consen 42 HAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSH----AGSITALKFYPPLSKS-----HLLSGSDDGHII 110 (362)
T ss_pred cccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceecc----ccceEEEEecCCcchh-----heeeecCCCcEE
Confidence 36789999996 9999999999999999997 3455555444 3679999998755433 477889999999
Q ss_pred EEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccc
Q 003087 132 QIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQL 211 (849)
Q Consensus 132 lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l 211 (849)
+|++..=.+. .++++| +..|+.++.||.|++-.++|.|+ .+++|++..+..
T Consensus 111 iw~~~~W~~~-----------~slK~H-~~~Vt~lsiHPS~KLALsVg~D~-------------~lr~WNLV~Gr~---- 161 (362)
T KOG0294|consen 111 IWRVGSWELL-----------KSLKAH-KGQVTDLSIHPSGKLALSVGGDQ-------------VLRTWNLVRGRV---- 161 (362)
T ss_pred EEEcCCeEEe-----------eeeccc-ccccceeEecCCCceEEEEcCCc-------------eeeeehhhcCcc----
Confidence 9997642221 234544 44599999999999999999997 389999866421
Q ss_pred eeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCC
Q 003087 212 YTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPIS 291 (849)
Q Consensus 212 ~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (849)
++....+ + ....|.|+|.|.+.+.++.+ .|-+|.+++.. .+.. ++ .+.
T Consensus 162 ------a~v~~L~---~--~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~----v~~~-----------i~-----~~~ 209 (362)
T KOG0294|consen 162 ------AFVLNLK---N--KATLVSWSPQGDHFVVSGRN-KIDIYQLDNAS----VFRE-----------IE-----NPK 209 (362)
T ss_pred ------ceeeccC---C--cceeeEEcCCCCEEEEEecc-EEEEEecccHh----Hhhh-----------hh-----ccc
Confidence 1111111 1 12249999999988876655 57799998752 2221 11 123
Q ss_pred CcEEEEEecCCEEEEEEeCCcEEEEEecCCc
Q 003087 292 DITDFAWWSDNILILARKSSIITMIDVLSGL 322 (849)
Q Consensus 292 ~v~~vaws~D~~la~a~~dgti~lwdl~~~~ 322 (849)
.+..+.|=..+.+++|..|+.|++||-..+.
T Consensus 210 r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~ 240 (362)
T KOG0294|consen 210 RILCATFLDGSELLVGGDNEWISLKDTDSDT 240 (362)
T ss_pred cceeeeecCCceEEEecCCceEEEeccCCCc
Confidence 4677888777789999999999999988755
No 162
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.44 E-value=2.7e-12 Score=139.14 Aligned_cols=204 Identities=15% Similarity=0.103 Sum_probs=144.6
Q ss_pred CCCEEEEEECCCC--CEEEEEeCCCcEEEEecCCcc-----ceecccccccccccEEEEEecCCcccccccceeEEEEeC
Q 003087 54 LGASIYGAWSESH--DVLGIVDDTHTVYFFKANGEE-----ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTS 126 (849)
Q Consensus 54 ~~~v~~vafSPDG--~~LAs~~~dgtIrlWd~~g~~-----~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~ 126 (849)
...|.+++|.|-- +++|+|+.-|+|-|||+.+++ +...++ ++.+|.+|.|+|.... ++++.|+
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~----hs~~Vs~l~F~P~n~s------~i~ssSy 255 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTP----HSGPVSGLKFSPANTS------QIYSSSY 255 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEecc----CCccccceEecCCChh------heeeecc
Confidence 4578999999954 589999999999999995321 122222 3467999999984332 4777899
Q ss_pred CCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCc
Q 003087 127 DGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNL 206 (849)
Q Consensus 127 Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~ 206 (849)
||+||+-|+..+....++. +. .....+.+..|+.+.+.++.+++-+ ...+||.....
T Consensus 256 DGtiR~~D~~~~i~e~v~s---------~~-~d~~~fs~~d~~~e~~~vl~~~~~G-------------~f~~iD~R~~~ 312 (498)
T KOG4328|consen 256 DGTIRLQDFEGNISEEVLS---------LD-TDNIWFSSLDFSAESRSVLFGDNVG-------------NFNVIDLRTDG 312 (498)
T ss_pred CceeeeeeecchhhHHHhh---------cC-ccceeeeeccccCCCccEEEeeccc-------------ceEEEEeecCC
Confidence 9999999998765543332 11 1123578899999888877776553 26788876532
Q ss_pred -CcccceeccccceeeccCCCccccccceEEEccCC-CEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCC
Q 003087 207 -ELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQG-KFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFD 284 (849)
Q Consensus 207 -~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG-~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~ 284 (849)
.++.+. .|..-|.+|++.|.. .+|||+|.|+|++|||+...+. +.-+. |+.
T Consensus 313 s~~~~~~--------------lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~--K~sp~-----------lst 365 (498)
T KOG4328|consen 313 SEYENLR--------------LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRG--KASPF-----------LST 365 (498)
T ss_pred ccchhhh--------------hhhcccceeecCCCCchheeecccCcceeeeehhhhcC--CCCcc-----------eec
Confidence 122221 167789999999966 5699999999999999986532 11010 111
Q ss_pred CCCCCCCCcEEEEEecC-CEEEEEEeCCcEEEEEec
Q 003087 285 GRTKPISDITDFAWWSD-NILILARKSSIITMIDVL 319 (849)
Q Consensus 285 ~~~~~~~~v~~vaws~D-~~la~a~~dgti~lwdl~ 319 (849)
-.|.-.|.++.|||+ |.|+++..|.+|+|||..
T Consensus 366 --~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 366 --LPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred --ccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 246667999999996 568889999999999985
No 163
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=1.6e-12 Score=140.04 Aligned_cols=203 Identities=13% Similarity=0.135 Sum_probs=137.1
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEecCC-ccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEec
Q 003087 58 IYGAWSESHDVLGIVDDTHTVYFFKANG-EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEIS 136 (849)
Q Consensus 58 ~~vafSPDG~~LAs~~~dgtIrlWd~~g-~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~ 136 (849)
..|||++||..||+|+.||++|+|+... ..+.....|+ ..|..+.|+||+.. +++++.| ..++|++.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~----~eV~DL~FS~dgk~-------lasig~d-~~~VW~~~ 215 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHH----AEVKDLDFSPDGKF-------LASIGAD-SARVWSVN 215 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhc----CccccceeCCCCcE-------EEEecCC-ceEEEEec
Confidence 6799999999999999999999999543 3233333344 46899999998865 4455888 89999999
Q ss_pred CCCCcccccccccCCcceeccccCCceEEEEEcCCC-----ceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccc
Q 003087 137 QDPSASISSASASSSGLTLRRQFPQNVICTDYHPEL-----SLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQL 211 (849)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg-----~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l 211 (849)
++...+..+ + +.+ +.-.....|+-|+ ++.|+....+ .-+.|.+++|+-+... +
T Consensus 216 ~g~~~a~~t------~--~~k--~~~~~~cRF~~d~~~~~l~laa~~~~~~--------~v~~~~~~~w~~~~~l---~- 273 (398)
T KOG0771|consen 216 TGAALARKT------P--FSK--DEMFSSCRFSVDNAQETLRLAASQFPGG--------GVRLCDISLWSGSNFL---R- 273 (398)
T ss_pred cCchhhhcC------C--ccc--chhhhhceecccCCCceEEEEEecCCCC--------ceeEEEeeeecccccc---c-
Confidence 874432211 0 111 1236778899888 3333322222 1122455666554210 0
Q ss_pred eeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCC
Q 003087 212 YTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPIS 291 (849)
Q Consensus 212 ~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (849)
..+ ..++ ...|.+++.|+||+++|.|+.||.|.|.+..+.++ ++..+ ..|..
T Consensus 274 -~~~------~~~~---~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~-~~~vk-----------------~aH~~ 325 (398)
T KOG0771|consen 274 -LRK------KIKR---FKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQR-LQYVK-----------------EAHLG 325 (398)
T ss_pred -hhh------hhhc---cCcceeEEEcCCCcEEEEeccCCcEEEEEeceeee-eEeeh-----------------hhhee
Confidence 000 1111 24789999999999999999999999999997654 22222 24666
Q ss_pred CcEEEEEecCCE-EEEEEeCCcEEEEEecCCc
Q 003087 292 DITDFAWWSDNI-LILARKSSIITMIDVLSGL 322 (849)
Q Consensus 292 ~v~~vaws~D~~-la~a~~dgti~lwdl~~~~ 322 (849)
-|.+++|+||.+ ++..+.+.+..|-.+.-..
T Consensus 326 ~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~ 357 (398)
T KOG0771|consen 326 FVTGLTFSPDSRYLASVSSDNEAAVTKLAVDK 357 (398)
T ss_pred eeeeEEEcCCcCcccccccCCceeEEEEeecc
Confidence 799999999976 6777888888888877643
No 164
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.43 E-value=5.1e-12 Score=131.74 Aligned_cols=199 Identities=13% Similarity=0.119 Sum_probs=128.5
Q ss_pred cCCCCeEEEEe-CCeEEEEecCCCCCcceeeeee-cCCC---CEEEEEECCCCCEEEEEeCCCcEEEEecC--Cccce--
Q 003087 19 SPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNC-TGLG---ASIYGAWSESHDVLGIVDDTHTVYFFKAN--GEEIT-- 89 (849)
Q Consensus 19 SPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~-~~~~---~v~~vafSPDG~~LAs~~~dgtIrlWd~~--g~~~~-- 89 (849)
-|+..++|+.+ ++-|+|||.-++ +....+.. .+.. .-.+|+|||||..|-.| ...+||++|+. |..+.
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG--~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy 196 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTG--KLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVY 196 (406)
T ss_pred CCccceeeeccccCceeeeecccc--ccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcch
Confidence 48888999887 678999997653 33333331 1222 33689999999999765 55799999984 65432
Q ss_pred -ecccccccccccEEEEEecC-CcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEE
Q 003087 90 -RFTNKHLKVSLPIIGLIAQD-ETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTD 167 (849)
Q Consensus 90 -~l~~~~~~~~~~V~~l~fs~-~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sva 167 (849)
++.....+..+-|..++|+| +... +++.++-..+-|++-....... +.++|.++|+-+.
T Consensus 197 ~t~~~~k~gq~giisc~a~sP~~~~~-------~a~gsY~q~~giy~~~~~~pl~------------llggh~gGvThL~ 257 (406)
T KOG2919|consen 197 TTVTKGKFGQKGIISCFAFSPMDSKT-------LAVGSYGQRVGIYNDDGRRPLQ------------LLGGHGGGVTHLQ 257 (406)
T ss_pred hhhhcccccccceeeeeeccCCCCcc-------eeeecccceeeeEecCCCCcee------------eecccCCCeeeEE
Confidence 22221222334577899998 3221 3445777777776644333221 2346678999999
Q ss_pred EcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEE
Q 003087 168 YHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATS 247 (849)
Q Consensus 168 fsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~ 247 (849)
|+|||+.|.||+.-.. .|-.||+.... ++++..+ ++.+ .++.---..+-|+|++||+|
T Consensus 258 ~~edGn~lfsGaRk~d------------kIl~WDiR~~~--~pv~~L~------rhv~--~TNQRI~FDld~~~~~LasG 315 (406)
T KOG2919|consen 258 WCEDGNKLFSGARKDD------------KILCWDIRYSR--DPVYALE------RHVG--DTNQRILFDLDPKGEILASG 315 (406)
T ss_pred eccCcCeecccccCCC------------eEEEEeehhcc--chhhhhh------hhcc--CccceEEEecCCCCceeecc
Confidence 9999999998875431 37789987542 2333221 1111 11111124456999999999
Q ss_pred eCCCcEEEEecCCC
Q 003087 248 DTNGCLYIFEMDKD 261 (849)
Q Consensus 248 s~Dgtv~LWd~~~~ 261 (849)
++||.|++||+++.
T Consensus 316 ~tdG~V~vwdlk~~ 329 (406)
T KOG2919|consen 316 DTDGSVRVWDLKDL 329 (406)
T ss_pred CCCccEEEEecCCC
Confidence 99999999999974
No 165
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.41 E-value=1.4e-11 Score=128.58 Aligned_cols=255 Identities=11% Similarity=0.071 Sum_probs=157.7
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCC-CCc------ceee---eeecCCCCEEEEEE-------CCCCCEEEEE
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDD-YQE------PCGI---FNCTGLGASIYGAW-------SESHDVLGIV 72 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~-~~~------~~~~---~~~~~~~~v~~vaf-------SPDG~~LAs~ 72 (849)
+......|||||..|.+-+ |++..+|++..+ +.. +... +.......|-.-.| -|+..+.|+.
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 4566788999999888776 789999986422 111 0000 01011234444455 3899999999
Q ss_pred eCCCcEEEEecC-Cccceeccc-ccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecC-CCCccccccccc
Q 003087 73 DDTHTVYFFKAN-GEEITRFTN-KHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQ-DPSASISSASAS 149 (849)
Q Consensus 73 ~~dgtIrlWd~~-g~~~~~l~~-~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~-~~~~~~~~~~~~ 149 (849)
+.+.-|++||.. |+....... .|.+--.+..+|.|+||+... .+++..+||++|++. |..-..+. +.
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeql--------faGykrcirvFdt~RpGr~c~vy~-t~- 199 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQL--------FAGYKRCIRVFDTSRPGRDCPVYT-TV- 199 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeE--------eecccceEEEeeccCCCCCCcchh-hh-
Confidence 999999999986 654332211 011111245689999987542 248999999999955 33222221 00
Q ss_pred CCcceeccccCCceEEEEEcCCCc-eEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCcc
Q 003087 150 SSGLTLRRQFPQNVICTDYHPELS-LLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEV 228 (849)
Q Consensus 150 ~~~~~l~~~~~~~V~svafsPdg~-lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h 228 (849)
..--.|+ ..-|.+++|||--. ++|++|-..++ .|+-|+-.. ++. ...| |
T Consensus 200 --~~~k~gq-~giisc~a~sP~~~~~~a~gsY~q~~-----------giy~~~~~~-----pl~---------llgg--h 249 (406)
T KOG2919|consen 200 --TKGKFGQ-KGIISCFAFSPMDSKTLAVGSYGQRV-----------GIYNDDGRR-----PLQ---------LLGG--H 249 (406)
T ss_pred --hcccccc-cceeeeeeccCCCCcceeeeccccee-----------eeEecCCCC-----cee---------eecc--c
Confidence 0000111 23589999999554 88888776532 244454322 121 1235 8
Q ss_pred ccccceEEEccCCCEEEEEeC-CCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCC-cEEEEEecCC-EEE
Q 003087 229 QLAHPKVLISPQGKFVATSDT-NGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISD-ITDFAWWSDN-ILI 305 (849)
Q Consensus 229 ~~~V~~vafSPDG~~LAs~s~-Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~-v~~vaws~D~-~la 305 (849)
+++|..+.|-|||+.|.+|+. |..|-.||+..-+..+..+..+. +.-... ..|+. |++ .|+
T Consensus 250 ~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv--------------~~TNQRI~FDld--~~~~~La 313 (406)
T KOG2919|consen 250 GGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHV--------------GDTNQRILFDLD--PKGEILA 313 (406)
T ss_pred CCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhc--------------cCccceEEEecC--CCCceee
Confidence 889999999999999999985 78899999986543332221111 000011 12332 555 477
Q ss_pred EEEeCCcEEEEEecCC
Q 003087 306 LARKSSIITMIDVLSG 321 (849)
Q Consensus 306 ~a~~dgti~lwdl~~~ 321 (849)
+|+.||.|+|||+++.
T Consensus 314 sG~tdG~V~vwdlk~~ 329 (406)
T KOG2919|consen 314 SGDTDGSVRVWDLKDL 329 (406)
T ss_pred ccCCCccEEEEecCCC
Confidence 8889999999999983
No 166
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.41 E-value=1.1e-11 Score=127.05 Aligned_cols=154 Identities=18% Similarity=0.325 Sum_probs=104.2
Q ss_pred EEEEEcCCCCeEEEEeC-----------CeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEE--eCCCcEEE
Q 003087 14 VSLFISPRGERVAVAAV-----------NQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIV--DDTHTVYF 80 (849)
Q Consensus 14 ~slafSPdG~~LAsas~-----------~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~--~~dgtIrl 80 (849)
..+.|+|+|++|++-.+ +...|+..+.. ..+.........+.|.+++|||+|+.+|+. ..+++|.|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~-~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEK-NIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecC-CCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 46889999999976532 13455554221 223333333234569999999999998754 45678888
Q ss_pred EecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccC
Q 003087 81 FKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFP 160 (849)
Q Consensus 81 Wd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (849)
||+.++.+..+ . .
T Consensus 88 yd~~~~~i~~~----------------------------------------------------------------~---~ 100 (194)
T PF08662_consen 88 YDVKGKKIFSF----------------------------------------------------------------G---T 100 (194)
T ss_pred EcCcccEeEee----------------------------------------------------------------c---C
Confidence 88853322111 0 1
Q ss_pred CceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccC
Q 003087 161 QNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQ 240 (849)
Q Consensus 161 ~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPD 240 (849)
..+++|.|||+|++||+||.++. +| .|.+||+... +.+... +...+..++||||
T Consensus 101 ~~~n~i~wsP~G~~l~~~g~~n~--------~G--~l~~wd~~~~---~~i~~~-------------~~~~~t~~~WsPd 154 (194)
T PF08662_consen 101 QPRNTISWSPDGRFLVLAGFGNL--------NG--DLEFWDVRKK---KKISTF-------------EHSDATDVEWSPD 154 (194)
T ss_pred CCceEEEECCCCCEEEEEEccCC--------Cc--EEEEEECCCC---EEeecc-------------ccCcEEEEEEcCC
Confidence 23688999999999999986641 24 3899999853 222211 2235679999999
Q ss_pred CCEEEEEeC------CCcEEEEecCCC
Q 003087 241 GKFVATSDT------NGCLYIFEMDKD 261 (849)
Q Consensus 241 G~~LAs~s~------Dgtv~LWd~~~~ 261 (849)
|++|||+.. |..++||+..+.
T Consensus 155 Gr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 155 GRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred CCEEEEEEeccceeccccEEEEEecCe
Confidence 999999975 789999999875
No 167
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.40 E-value=2.6e-11 Score=125.66 Aligned_cols=226 Identities=10% Similarity=0.070 Sum_probs=148.7
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCC--EEEEEeCCCcEEEEecC-Cc
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHD--VLGIVDDTHTVYFFKAN-GE 86 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~--~LAs~~~dgtIrlWd~~-g~ 86 (849)
+.|..++||-||..+++|+ |+++++||+..+ +.. .... |.+.|+++.|=+... .||+||.|.|||+||.. .+
T Consensus 73 ~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~--Q~~-~v~~-Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~ 148 (347)
T KOG0647|consen 73 GPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG--QVS-QVAA-HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN 148 (347)
T ss_pred CCeEEEEEccCCceEEeeccCCceEEEEccCC--Cee-eeee-cccceeEEEEecCCCcceeEecccccceeecccCCCC
Confidence 8899999999999999996 899999998754 221 1222 467899999987666 99999999999999986 44
Q ss_pred cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcc-cccccccCCcceeccccCCceEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSAS-ISSASASSSGLTLRRQFPQNVIC 165 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~V~s 165 (849)
.+.++.-. ..|.++..-. .-+++++.+..|.++++..++... ..+ ...+.-+.|
T Consensus 149 pv~t~~LP-----eRvYa~Dv~~---------pm~vVata~r~i~vynL~n~~te~k~~~-----------SpLk~Q~R~ 203 (347)
T KOG0647|consen 149 PVATLQLP-----ERVYAADVLY---------PMAVVATAERHIAVYNLENPPTEFKRIE-----------SPLKWQTRC 203 (347)
T ss_pred eeeeeecc-----ceeeehhccC---------ceeEEEecCCcEEEEEcCCCcchhhhhc-----------CcccceeeE
Confidence 44443221 1232222100 013456788899999997655421 111 112234899
Q ss_pred EEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCC--Cc--cccccceEEEccCC
Q 003087 166 TDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKG--HE--VQLAHPKVLISPQG 241 (849)
Q Consensus 166 vafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g--~~--h~~~V~~vafSPDG 241 (849)
|+..+|....|.||-.|. +.+-.++.+..-..+ + |..|+. .. .--.|++|+|.|.-
T Consensus 204 va~f~d~~~~alGsiEGr-------------v~iq~id~~~~~~nF-t------FkCHR~~~~~~~~VYaVNsi~FhP~h 263 (347)
T KOG0647|consen 204 VACFQDKDGFALGSIEGR-------------VAIQYIDDPNPKDNF-T------FKCHRSTNSVNDDVYAVNSIAFHPVH 263 (347)
T ss_pred EEEEecCCceEeeeecce-------------EEEEecCCCCccCce-e------EEEeccCCCCCCceEEecceEeeccc
Confidence 999999999899988863 344444443111111 0 111110 00 12368899999999
Q ss_pred CEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEE
Q 003087 242 KFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNIL 304 (849)
Q Consensus 242 ~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~l 304 (849)
..|||+|.||+...||-+.... |+..+ .+..+|..-+|..+|.+
T Consensus 264 gtlvTaGsDGtf~FWDkdar~k-Lk~s~------------------~~~qpItcc~fn~~G~i 307 (347)
T KOG0647|consen 264 GTLVTAGSDGTFSFWDKDARTK-LKTSE------------------THPQPITCCSFNRNGSI 307 (347)
T ss_pred ceEEEecCCceEEEecchhhhh-hhccC------------------cCCCccceeEecCCCCE
Confidence 9999999999999999986533 33322 24456777788888853
No 168
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=3.1e-11 Score=139.24 Aligned_cols=198 Identities=12% Similarity=0.102 Sum_probs=121.6
Q ss_pred cceEEEEEcCCCCeEEEEeC----CeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEE-EEeCCCc--EEEEec
Q 003087 11 KKQVSLFISPRGERVAVAAV----NQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLG-IVDDTHT--VYFFKA 83 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~----~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LA-s~~~dgt--IrlWd~ 83 (849)
+.+.+.+|||||+.||..+. .+|.+|+..++... .+.. ..+.+...+|||||+.|| +.+.+|. |++||+
T Consensus 202 ~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~---~l~~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~ 277 (435)
T PRK05137 202 SLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE---LVGN-FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDL 277 (435)
T ss_pred CCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE---Eeec-CCCcccCcEECCCCCEEEEEEecCCCceEEEEEC
Confidence 57899999999999998862 37889987643211 1221 134556889999999887 4455555 777788
Q ss_pred CCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCC--cEEEEEecCCCCcccccccccCCcceeccccCC
Q 003087 84 NGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDG--FLHQIEISQDPSASISSASASSSGLTLRRQFPQ 161 (849)
Q Consensus 84 ~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg--~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (849)
.+..+.++..+. .......|+||+.... ++...+| .|.+|++..+..... . ....
T Consensus 278 ~~~~~~~Lt~~~----~~~~~~~~spDG~~i~------f~s~~~g~~~Iy~~d~~g~~~~~l------------t-~~~~ 334 (435)
T PRK05137 278 RSGTTTRLTDSP----AIDTSPSYSPDGSQIV------FESDRSGSPQLYVMNADGSNPRRI------------S-FGGG 334 (435)
T ss_pred CCCceEEccCCC----CccCceeEcCCCCEEE------EEECCCCCCeEEEEECCCCCeEEe------------e-cCCC
Confidence 877666665432 2234567887654221 1212344 466666554332211 1 1122
Q ss_pred ceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCC
Q 003087 162 NVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQG 241 (849)
Q Consensus 162 ~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG 241 (849)
.+...+|||||+.||..+.++ |...|.+|+..++. ..+.. +...+..++|||||
T Consensus 335 ~~~~~~~SpdG~~ia~~~~~~----------~~~~i~~~d~~~~~--~~~lt--------------~~~~~~~p~~spDG 388 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFTKQGG----------GQFSIGVMKPDGSG--ERILT--------------SGFLVEGPTWAPNG 388 (435)
T ss_pred cccCeEECCCCCEEEEEEcCC----------CceEEEEEECCCCc--eEecc--------------CCCCCCCCeECCCC
Confidence 467789999999998876543 22347777765532 11111 11235678999999
Q ss_pred CEEEEEeCCC------cEEEEecCCC
Q 003087 242 KFVATSDTNG------CLYIFEMDKD 261 (849)
Q Consensus 242 ~~LAs~s~Dg------tv~LWd~~~~ 261 (849)
+.|+..+.++ .|.+.++.+.
T Consensus 389 ~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 389 RVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred CEEEEEEccCCCCCcceEEEEECCCC
Confidence 9998776542 4666676654
No 169
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.37 E-value=4.5e-11 Score=124.85 Aligned_cols=250 Identities=14% Similarity=0.133 Sum_probs=160.8
Q ss_pred cceEEEEEcCCCCeEEEEeC-CeEEEEecCCCC-CcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEec-CCcc
Q 003087 11 KKQVSLFISPRGERVAVAAV-NQVTILQKDDDY-QEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKA-NGEE 87 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~-~~i~iw~~~~~~-~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~-~g~~ 87 (849)
..|++-||++|++.+|++-. +.|.|....+.. -.+..++. .+...|+.|.|+|.+..|++++.|.+-+||.. .|..
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls-~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLS-EHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehh-hhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 67999999999999999864 578888755321 11222222 23567899999999999999999999999998 5532
Q ss_pred ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEE
Q 003087 88 ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTD 167 (849)
Q Consensus 88 ~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sva 167 (849)
..-......++.++.+|.++|.. +.|++.|.-..|.+|.+..... .... +.++.-+...|.+++
T Consensus 90 -WkptlvLlRiNrAAt~V~WsP~e-------nkFAVgSgar~isVcy~E~ENd-WWVs-------KhikkPirStv~sld 153 (361)
T KOG1523|consen 90 -WKPTLVLLRINRAATCVKWSPKE-------NKFAVGSGARLISVCYYEQEND-WWVS-------KHIKKPIRSTVTSLD 153 (361)
T ss_pred -eccceeEEEeccceeeEeecCcC-------ceEEeccCccEEEEEEEecccc-eehh-------hhhCCccccceeeee
Confidence 10001112334567788887733 3577878888899998864322 1100 111223345699999
Q ss_pred EcCCCceEEEEecCCCCccccCCCCCCceeeEEEe-----cCCcCcccce-eccccceeeccCCCccccccceEEEccCC
Q 003087 168 YHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRR-----CHNLELEQLY-TTQIEGLYCEPKGHEVQLAHPKVLISPQG 241 (849)
Q Consensus 168 fsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~-----~~~~~~~~l~-~~~~~~~~~~~~g~~h~~~V~~vafSPDG 241 (849)
|||++-+||+||.|+. .+++.. +..+...+-- ...++.+++.... ..++|..|.|||+|
T Consensus 154 WhpnnVLlaaGs~D~k-------------~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~--~ggwvh~v~fs~sG 218 (361)
T KOG1523|consen 154 WHPNNVLLAAGSTDGK-------------CRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASS--SGGWVHGVLFSPSG 218 (361)
T ss_pred ccCCcceecccccCcc-------------eeEEEEeeeccccCCCCCCCccCCcHHHHHHhhcc--CCCceeeeEeCCCC
Confidence 9999999999999963 333332 2221111100 0111112222111 23589999999999
Q ss_pred CEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeC
Q 003087 242 KFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKS 310 (849)
Q Consensus 242 ~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~d 310 (849)
..||=.+.|.+|.+=|..+....+..... .+ -+..++.|-++..++.|+.|
T Consensus 219 ~~lawv~Hds~v~~~da~~p~~~v~~~~~-----------------~~-lP~ls~~~ise~~vv~ag~~ 269 (361)
T KOG1523|consen 219 NRLAWVGHDSTVSFVDAAGPSERVQSVAT-----------------AQ-LPLLSVSWISENSVVAAGYD 269 (361)
T ss_pred CEeeEecCCCceEEeecCCCchhccchhh-----------------cc-CCceeeEeecCCceeecCCC
Confidence 99999999999999998876321112110 11 34678889888887777666
No 170
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.36 E-value=6.6e-11 Score=121.87 Aligned_cols=264 Identities=14% Similarity=0.165 Sum_probs=162.8
Q ss_pred cceEEEEEcCCCC-eEEEEe----C----CeEEEEecCCCCCcce-eeee----e--cCCCCEEEEEECCCCCEEEEEeC
Q 003087 11 KKQVSLFISPRGE-RVAVAA----V----NQVTILQKDDDYQEPC-GIFN----C--TGLGASIYGAWSESHDVLGIVDD 74 (849)
Q Consensus 11 ~~v~slafSPdG~-~LAsas----~----~~i~iw~~~~~~~~~~-~~~~----~--~~~~~v~~vafSPDG~~LAs~~~ 74 (849)
+-||.|+=||-.+ .||++. | ..+.||....++++.. .++. . ...+.+.+|-|-||+..||+-.
T Consensus 64 gEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~- 142 (370)
T KOG1007|consen 64 GEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD- 142 (370)
T ss_pred cceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-
Confidence 7899999999665 556652 2 1578999765433210 0111 1 1256789999999999999988
Q ss_pred CCcEEEEecC-Ccc-ceecccc-cccccccEEEEEecC--CcccccccceeEEEEeCCCcEEEEEecCCCCccccccccc
Q 003087 75 THTVYFFKAN-GEE-ITRFTNK-HLKVSLPIIGLIAQD--ETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASAS 149 (849)
Q Consensus 75 dgtIrlWd~~-g~~-~~~l~~~-~~~~~~~V~~l~fs~--~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~ 149 (849)
|..|.||++. +.. ...+... ..+......+-+++| ++. +|++ ..|++++.||+.+......+
T Consensus 143 dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn-------qv~t-t~d~tl~~~D~RT~~~~~sI----- 209 (370)
T KOG1007|consen 143 DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN-------QVAT-TSDSTLQFWDLRTMKKNNSI----- 209 (370)
T ss_pred cCceEEEEcccCcchheeecccccccccceecccccCCCCccc-------eEEE-eCCCcEEEEEccchhhhcch-----
Confidence 6789999996 444 2222211 000011223334444 221 2333 78999999999875543222
Q ss_pred CCcceeccccCCceEEEEEcCCCce-EEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCcc
Q 003087 150 SSGLTLRRQFPQNVICTDYHPELSL-LSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEV 228 (849)
Q Consensus 150 ~~~~~l~~~~~~~V~svafsPdg~l-Las~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h 228 (849)
...|.+.|..++|.|+-+. ||++|.|+ .|++||..... .++. ...+ |
T Consensus 210 ------~dAHgq~vrdlDfNpnkq~~lvt~gDdg-------------yvriWD~R~tk--~pv~---------el~~--H 257 (370)
T KOG1007|consen 210 ------EDAHGQRVRDLDFNPNKQHILVTCGDDG-------------YVRIWDTRKTK--FPVQ---------ELPG--H 257 (370)
T ss_pred ------hhhhcceeeeccCCCCceEEEEEcCCCc-------------cEEEEeccCCC--cccc---------ccCC--C
Confidence 2234456999999999875 55655553 59999987642 1221 2245 8
Q ss_pred ccccceEEEcc-CCCEEEEEeCCCcEEEEecCCCcccc-ccccc--ccccccc---cccccCCC----CCCCCCCcEEEE
Q 003087 229 QLAHPKVLISP-QGKFVATSDTNGCLYIFEMDKDNFSL-SKFAC--GERFDLQ---VADSLFDG----RTKPISDITDFA 297 (849)
Q Consensus 229 ~~~V~~vafSP-DG~~LAs~s~Dgtv~LWd~~~~~~~l-~~~~~--~~~~~~~---~~~~l~~~----~~~~~~~v~~va 297 (849)
..+|++|.|.| -.|+|.|+|.|..|-||-...-.... -.+.. .++++.. -.++|-.+ -.+|...|+.++
T Consensus 258 sHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~a 337 (370)
T KOG1007|consen 258 SHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALA 337 (370)
T ss_pred ceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEe
Confidence 88999999998 56889999999999999776321000 01111 0111110 01122221 124667899999
Q ss_pred EecCC--EEEEEEeCCcEEEEEecC
Q 003087 298 WWSDN--ILILARKSSIITMIDVLS 320 (849)
Q Consensus 298 ws~D~--~la~a~~dgti~lwdl~~ 320 (849)
||+-. ..|+-+.||.+.|-+++.
T Consensus 338 WSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 338 WSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred eccCCCeeEEEeccCceEEeecCCh
Confidence 99844 467889999998888764
No 171
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.36 E-value=6.2e-11 Score=129.74 Aligned_cols=251 Identities=13% Similarity=0.124 Sum_probs=173.6
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCcc
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEE 87 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~ 87 (849)
+-+..|.+|..|+..++++++ |++++||+ +. ++. ++..-.....+++|.|.| .||.|...|.--|.|.+.+.
T Consensus 367 h~delwgla~hps~~q~~T~gqdk~v~lW~-~~---k~~--wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~ 439 (626)
T KOG2106|consen 367 HGDELWGLATHPSKNQLLTCGQDKHVRLWN-DH---KLE--WTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQD 439 (626)
T ss_pred cccceeeEEcCCChhheeeccCcceEEEcc-CC---cee--EEEEecCceeEeeccCcc-eEEEeeccceEEEEecccce
Confidence 335789999999999999987 78999998 21 222 321114567899999999 99999999998898988766
Q ss_pred ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEE
Q 003087 88 ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTD 167 (849)
Q Consensus 88 ~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sva 167 (849)
+.++.. . +.++..|.|+|++.. ||+++.|+.|.+|-++.++..- . ....++..+|..++
T Consensus 440 lv~~~~---d-~~~ls~v~ysp~G~~-------lAvgs~d~~iyiy~Vs~~g~~y--~--------r~~k~~gs~ithLD 498 (626)
T KOG2106|consen 440 LVTIHT---D-NEQLSVVRYSPDGAF-------LAVGSHDNHIYIYRVSANGRKY--S--------RVGKCSGSPITHLD 498 (626)
T ss_pred eEEEEe---c-CCceEEEEEcCCCCE-------EEEecCCCeEEEEEECCCCcEE--E--------EeeeecCceeEEee
Confidence 555532 2 467899999997753 6778999999999998765421 1 11112235799999
Q ss_pred EcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccc-----eeccc-cceeeccCCCccccccceEEEccCC
Q 003087 168 YHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQL-----YTTQI-EGLYCEPKGHEVQLAHPKVLISPQG 241 (849)
Q Consensus 168 fsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l-----~~~~~-~~~~~~~~g~~h~~~V~~vafSPDG 241 (849)
||+|++.|.+-+.|- .|-.|......+.... .+..+ .|+. .+.+ .|..-|..++-|.+.
T Consensus 499 wS~Ds~~~~~~S~d~-------------eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~-v~g~-s~~t~i~a~~rs~~~ 563 (626)
T KOG2106|consen 499 WSSDSQFLVSNSGDY-------------EILYWKPSECKQITSVKDVKWATYTCTLGFE-VFGG-SDGTDINAVARSHCE 563 (626)
T ss_pred ecCCCceEEeccCce-------------EEEEEccccCcccceecceeeeeeEEEEEEE-Eecc-cCCchHHHhhhhhhh
Confidence 999999998766653 3667844332222111 01111 1221 1112 145578899999999
Q ss_pred CEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecC-CEEEEEEeCCcEEEEEe
Q 003087 242 KFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSD-NILILARKSSIITMIDV 318 (849)
Q Consensus 242 ~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D-~~la~a~~dgti~lwdl 318 (849)
++||+|+..|+|+|+.-+-- +.. .+..+. +.|...|..|+|.-+ +.+++...|.+|..|++
T Consensus 564 ~~lA~gdd~g~v~lf~yPc~-----s~r-A~~he~----------~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 564 KLLASGDDFGKVHLFSYPCS-----SPR-APSHEY----------GGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred hhhhccccCceEEEEccccC-----CCc-ccceee----------ccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 99999999999999987732 111 111111 346677899999874 55666679999999986
No 172
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=4.3e-12 Score=150.64 Aligned_cols=250 Identities=14% Similarity=0.230 Sum_probs=164.5
Q ss_pred ccceEEEEEcCCCC-eEEEEe-----------CCeEEEEecC--CCC--CcceeeeeecCCCCEEEEEECCCCCE----E
Q 003087 10 TKKQVSLFISPRGE-RVAVAA-----------VNQVTILQKD--DDY--QEPCGIFNCTGLGASIYGAWSESHDV----L 69 (849)
Q Consensus 10 ~~~v~slafSPdG~-~LAsas-----------~~~i~iw~~~--~~~--~~~~~~~~~~~~~~v~~vafSPDG~~----L 69 (849)
..+-..+||||+|. ++|+|- +.++.||-.+ +.. .++++.+. ....+..++|++-|.. |
T Consensus 6 ~~Rta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~--s~~rF~kL~W~~~g~~~~GlI 83 (1049)
T KOG0307|consen 6 LSRTATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ--SSNRFNKLAWGSYGSHSHGLI 83 (1049)
T ss_pred ccccceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc--ccccceeeeecccCCCcccee
Confidence 35567899999998 777651 2356677543 221 12344333 1457889999999887 9
Q ss_pred EEEeCCCcEEEEecC----Ccc---ceecccccccccccEEEEEecCCcc-cccccceeEEEEeCCCcEEEEEecCCCCc
Q 003087 70 GIVDDTHTVYFFKAN----GEE---ITRFTNKHLKVSLPIIGLIAQDETD-VQRSCLCSFTVFTSDGFLHQIEISQDPSA 141 (849)
Q Consensus 70 As~~~dgtIrlWd~~----g~~---~~~l~~~~~~~~~~V~~l~fs~~~~-~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~ 141 (849)
|.|..||+|-|||.. +.. +.+... +.++|.+|.|++... ..+| ++.||.|.+||+..-...
T Consensus 84 aGG~edG~I~ly~p~~~~~~~~~~~la~~~~----h~G~V~gLDfN~~q~nlLAS-------Ga~~geI~iWDlnn~~tP 152 (1049)
T KOG0307|consen 84 AGGLEDGNIVLYDPASIIANASEEVLATKSK----HTGPVLGLDFNPFQGNLLAS-------GADDGEILIWDLNKPETP 152 (1049)
T ss_pred eccccCCceEEecchhhccCcchHHHhhhcc----cCCceeeeeccccCCceeec-------cCCCCcEEEeccCCcCCC
Confidence 999999999999974 322 333333 346899999988433 4344 489999999999753322
Q ss_pred ccccccccCCcceeccc-cCCceEEEEEcCCCc-eEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccce
Q 003087 142 SISSASASSSGLTLRRQ-FPQNVICTDYHPELS-LLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGL 219 (849)
Q Consensus 142 ~~~~~~~~~~~~~l~~~-~~~~V~svafsPdg~-lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~ 219 (849)
+++.+. .+..|.+++|.-.-+ .||+++.+++ +.+||+.... ++....
T Consensus 153 -----------~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~-------------~~iWDlr~~~---pii~ls---- 201 (1049)
T KOG0307|consen 153 -----------FTPGSQAPPSEIKCLSWNRKVSHILASGSPSGR-------------AVIWDLRKKK---PIIKLS---- 201 (1049)
T ss_pred -----------CCCCCCCCcccceEeccchhhhHHhhccCCCCC-------------ceeccccCCC---cccccc----
Confidence 122122 345699999988655 5666665542 6789998752 222111
Q ss_pred eeccCCCccccccceEEEccCCCE-EEEEeCC---CcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEE
Q 003087 220 YCEPKGHEVQLAHPKVLISPQGKF-VATSDTN---GCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITD 295 (849)
Q Consensus 220 ~~~~~g~~h~~~V~~vafSPDG~~-LAs~s~D---gtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~ 295 (849)
.+.+ ...+..|+|.||+.. |++++.| -+|.+||+......++.+. .|..+|.+
T Consensus 202 --~~~~---~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~------------------~H~~Gils 258 (1049)
T KOG0307|consen 202 --DTPG---RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILE------------------GHQRGILS 258 (1049)
T ss_pred --cCCC---ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhc------------------ccccceee
Confidence 0011 124668999999854 5555544 3799999875433344432 35567999
Q ss_pred EEEecCC-E-EEEEEeCCcEEEEEecCCccccc
Q 003087 296 FAWWSDN-I-LILARKSSIITMIDVLSGLKVKE 326 (849)
Q Consensus 296 vaws~D~-~-la~a~~dgti~lwdl~~~~~l~~ 326 (849)
+.|.+.+ . +++.++|+.|.+|+..+++.+.+
T Consensus 259 lsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~ 291 (1049)
T KOG0307|consen 259 LSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGE 291 (1049)
T ss_pred eccCCCCchhhhcccCCCCeeEecCCCceEeee
Confidence 9999844 5 56788999999999999986653
No 173
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.36 E-value=3.2e-10 Score=124.62 Aligned_cols=244 Identities=18% Similarity=0.276 Sum_probs=163.0
Q ss_pred ceEEEEE-cCCCC-eEEEEe--CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeC-CCcEEEEecCC-
Q 003087 12 KQVSLFI-SPRGE-RVAVAA--VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDD-THTVYFFKANG- 85 (849)
Q Consensus 12 ~v~slaf-SPdG~-~LAsas--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~-dgtIrlWd~~g- 85 (849)
.+..+.+ +|++. +++..+ ++.+.+|+.... ......+. .+...|..++|+|+|+.+++++. |+++++|++..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (466)
T COG2319 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTP-GKLIRTLE-GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG 188 (466)
T ss_pred ceeeEEEECCCcceEEeccCCCCccEEEEEecCC-CeEEEEEe-cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC
Confidence 5666777 99999 444433 568999997531 11122222 23567889999999999999986 99999999974
Q ss_pred ccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEE
Q 003087 86 EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVIC 165 (849)
Q Consensus 86 ~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~s 165 (849)
..+..+..+ ...|.+++|+|++.. .++..+.||++++|+...+..... .+.+| ...+ .
T Consensus 189 ~~~~~~~~~----~~~v~~~~~~~~~~~------~~~~~~~d~~i~~wd~~~~~~~~~----------~~~~~-~~~~-~ 246 (466)
T COG2319 189 KPLSTLAGH----TDPVSSLAFSPDGGL------LIASGSSDGTIRLWDLSTGKLLRS----------TLSGH-SDSV-V 246 (466)
T ss_pred ceEEeeccC----CCceEEEEEcCCcce------EEEEecCCCcEEEEECCCCcEEee----------ecCCC-Ccce-e
Confidence 554454432 356889999875430 133348999999997764333210 13333 2332 2
Q ss_pred EEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEE
Q 003087 166 TDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVA 245 (849)
Q Consensus 166 vafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LA 245 (849)
..|+|++..+++++.++ .+++|+...... .+.. ..+ |...|.++.|+|++..++
T Consensus 247 ~~~~~~~~~~~~~~~d~-------------~~~~~~~~~~~~--~~~~---------~~~--~~~~v~~~~~~~~~~~~~ 300 (466)
T COG2319 247 SSFSPDGSLLASGSSDG-------------TIRLWDLRSSSS--LLRT---------LSG--HSSSVLSVAFSPDGKLLA 300 (466)
T ss_pred EeECCCCCEEEEecCCC-------------cEEEeeecCCCc--EEEE---------Eec--CCccEEEEEECCCCCEEE
Confidence 28999998888777775 389999876432 1111 023 678999999999999999
Q ss_pred EEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecC-CEEEEE-EeCCcEEEEEecCCc
Q 003087 246 TSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSD-NILILA-RKSSIITMIDVLSGL 322 (849)
Q Consensus 246 s~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D-~~la~a-~~dgti~lwdl~~~~ 322 (849)
+++.|+++++|+..+... ..... . ..+...+..+.|.++ ..++.+ ..|+.+.+|++....
T Consensus 301 ~~~~d~~~~~~~~~~~~~-~~~~~--~--------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 301 SGSSDGTVRLWDLETGKL-LSSLT--L--------------KGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EeeCCCcEEEEEcCCCce-EEEee--e--------------cccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 999999999998876532 11111 0 022235788888334 345555 578999999998877
No 174
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.35 E-value=5e-12 Score=133.53 Aligned_cols=214 Identities=14% Similarity=0.147 Sum_probs=148.4
Q ss_pred CCCCEEEEEECCCC-CEEEEEeCCCcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEE
Q 003087 53 GLGASIYGAWSESH-DVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLH 131 (849)
Q Consensus 53 ~~~~v~~vafSPDG-~~LAs~~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~ 131 (849)
|.++|.++|=.|.. ..+|||+.||.|++||+...++......|. +.|.+|.+.- +.|++++.|.+|+
T Consensus 65 HrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~---G~V~Gi~v~~---------~~~~tvgdDKtvK 132 (433)
T KOG0268|consen 65 HRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHE---GLVRGICVTQ---------TSFFTVGDDKTVK 132 (433)
T ss_pred cccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeeccc---CceeeEEecc---------cceEEecCCccee
Confidence 36789999999988 899999999999999998655443334342 4688888743 2478889999999
Q ss_pred EEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccc
Q 003087 132 QIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQL 211 (849)
Q Consensus 132 lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l 211 (849)
.|.+..... ..+ .| ...+..+.-+..+..+|++|.+ |.+||..-....+.+
T Consensus 133 ~wk~~~~p~-~ti-----------lg--~s~~~gIdh~~~~~~FaTcGe~---------------i~IWD~~R~~Pv~sm 183 (433)
T KOG0268|consen 133 QWKIDGPPL-HTI-----------LG--KSVYLGIDHHRKNSVFATCGEQ---------------IDIWDEQRDNPVSSM 183 (433)
T ss_pred eeeccCCcc-eee-----------ec--cccccccccccccccccccCce---------------eeecccccCCcccee
Confidence 999875322 221 11 2346777878788888887655 889998654322222
Q ss_pred eeccccceeeccCCCccccccceEEEccCCC-EEEEEeCCCcEEEEecCCCccccccccccccccc----ccccccCCC-
Q 003087 212 YTTQIEGLYCEPKGHEVQLAHPKVLISPQGK-FVATSDTNGCLYIFEMDKDNFSLSKFACGERFDL----QVADSLFDG- 285 (849)
Q Consensus 212 ~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~-~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~----~~~~~l~~~- 285 (849)
+ - ..+.|.++.|+|--. +||+++.|++|.|+|+..... +++......... |...+|+..
T Consensus 184 ---s--------w---G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P-l~KVi~~mRTN~IswnPeafnF~~a~ 248 (433)
T KOG0268|consen 184 ---S--------W---GADSISSVKFNPVETSILASCASDRSIVLYDLRQASP-LKKVILTMRTNTICWNPEAFNFVAAN 248 (433)
T ss_pred ---e--------c---CCCceeEEecCCCcchheeeeccCCceEEEecccCCc-cceeeeeccccceecCccccceeecc
Confidence 1 1 246788999999775 588888999999999987754 444332111000 000011100
Q ss_pred -------------------CCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecCCc
Q 003087 286 -------------------RTKPISDITDFAWWSDNI-LILARKSSIITMIDVLSGL 322 (849)
Q Consensus 286 -------------------~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~~ 322 (849)
..+|..-|.||.|||-|+ +++|+.|.+|+|+.+..+.
T Consensus 249 ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~ 305 (433)
T KOG0268|consen 249 EDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH 305 (433)
T ss_pred ccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCc
Confidence 134555689999999886 8899999999999998774
No 175
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.35 E-value=2.2e-11 Score=135.69 Aligned_cols=203 Identities=15% Similarity=0.217 Sum_probs=136.2
Q ss_pred EEEEcCCCCeEEEE---eCCeEEEEecCCCCCcceeeee-ecCCCCEEEEEECC-CCCEEEEEeCCCcEEEEecC--Ccc
Q 003087 15 SLFISPRGERVAVA---AVNQVTILQKDDDYQEPCGIFN-CTGLGASIYGAWSE-SHDVLGIVDDTHTVYFFKAN--GEE 87 (849)
Q Consensus 15 slafSPdG~~LAsa---s~~~i~iw~~~~~~~~~~~~~~-~~~~~~v~~vafSP-DG~~LAs~~~dgtIrlWd~~--g~~ 87 (849)
+=.|-.+.+++|+- ++|.|-|+.+.....-|-|... ......|+.++|.| |-+.||+|.+||.|+||.+. |-.
T Consensus 584 snGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~ 663 (1012)
T KOG1445|consen 584 SNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP 663 (1012)
T ss_pred cCceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCC
Confidence 34566788899875 4688999987643222223222 11246789999999 89999999999999999985 211
Q ss_pred ceecccc--cccccccEEEEEecC-CcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceE
Q 003087 88 ITRFTNK--HLKVSLPIIGLIAQD-ETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVI 164 (849)
Q Consensus 88 ~~~l~~~--~~~~~~~V~~l~fs~-~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~ 164 (849)
-....+. ...+...|.++.|.| ...+ ++++++|-+|++||+.+++.-. +|.| |...|.
T Consensus 664 e~~~tPe~~lt~h~eKI~slRfHPLAadv-------La~asyd~Ti~lWDl~~~~~~~-----------~l~g-HtdqIf 724 (1012)
T KOG1445|consen 664 ENEMTPEKILTIHGEKITSLRFHPLAADV-------LAVASYDSTIELWDLANAKLYS-----------RLVG-HTDQIF 724 (1012)
T ss_pred cccCCcceeeecccceEEEEEecchhhhH-------hhhhhccceeeeeehhhhhhhh-----------eecc-CcCcee
Confidence 1111111 111224689999998 2222 3345899999999998766422 3454 466799
Q ss_pred EEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEE
Q 003087 165 CTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFV 244 (849)
Q Consensus 165 svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~L 244 (849)
++||||||+++|+++-|++ |++++..++. +++..+. .+.| ..--.|.|-=||++|
T Consensus 725 ~~AWSpdGr~~AtVcKDg~-------------~rVy~Prs~e--~pv~Eg~------gpvg----tRgARi~wacdgr~v 779 (1012)
T KOG1445|consen 725 GIAWSPDGRRIATVCKDGT-------------LRVYEPRSRE--QPVYEGK------GPVG----TRGARILWACDGRIV 779 (1012)
T ss_pred EEEECCCCcceeeeecCce-------------EEEeCCCCCC--CccccCC------CCcc----CcceeEEEEecCcEE
Confidence 9999999999999999974 8888877653 2333211 1111 122367788899999
Q ss_pred EEEeCCC----cEEEEecCCC
Q 003087 245 ATSDTNG----CLYIFEMDKD 261 (849)
Q Consensus 245 As~s~Dg----tv~LWd~~~~ 261 (849)
...++|. .|.+++..+.
T Consensus 780 iv~Gfdk~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 780 IVVGFDKSSERQVQMYDAQTL 800 (1012)
T ss_pred EEecccccchhhhhhhhhhhc
Confidence 9999875 5677777654
No 176
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.34 E-value=1.2e-11 Score=125.90 Aligned_cols=261 Identities=13% Similarity=0.122 Sum_probs=157.7
Q ss_pred ccceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccce
Q 003087 10 TKKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEIT 89 (849)
Q Consensus 10 ~~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~ 89 (849)
...|+++-|-.++++++--+-|-|++|...+.+. ...+...+...|+.+.--|+ ..|.+-+.|+++-+|++.+....
T Consensus 14 ~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~--~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i 90 (323)
T KOG0322|consen 14 SSSVTSVLFQANERLMSGLSVGIVKMWVLQTERD--LPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFI 90 (323)
T ss_pred cchheehhhccchhhhcccccceEEEEEeecCcc--chhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceE
Confidence 4678999999999855433468999998765432 22233334567788888888 56888999999999998752111
Q ss_pred ---ecccccccc--------cccE----------------------EEEEecCCccc--c-------cc--ccee-EEEE
Q 003087 90 ---RFTNKHLKV--------SLPI----------------------IGLIAQDETDV--Q-------RS--CLCS-FTVF 124 (849)
Q Consensus 90 ---~l~~~~~~~--------~~~V----------------------~~l~fs~~~~~--~-------~s--~~~~-~~~~ 124 (849)
.+...+.++ .... ..+...|+... . +. +..+ |+++
T Consensus 91 ~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~llla 170 (323)
T KOG0322|consen 91 SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLA 170 (323)
T ss_pred EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEE
Confidence 111111100 0000 11222111000 0 11 1111 3444
Q ss_pred e-CCCcEEEEEecCCCC-cccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEe
Q 003087 125 T-SDGFLHQIEISQDPS-ASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRR 202 (849)
Q Consensus 125 s-~Dg~v~lw~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~ 202 (849)
+ .+|.|-+||++++.. ...-. .. ....... .|.+.|.++.|.+.-..=++||-++ .+..|.+
T Consensus 171 GyEsghvv~wd~S~~~~~~~~~~-~~-kv~~~~a-sh~qpvlsldyas~~~rGisgga~d-------------kl~~~Sl 234 (323)
T KOG0322|consen 171 GYESGHVVIWDLSTGDKIIQLPQ-SS-KVESPNA-SHKQPVLSLDYASSCDRGISGGADD-------------KLVMYSL 234 (323)
T ss_pred eccCCeEEEEEccCCceeecccc-cc-ccccchh-hccCcceeeeechhhcCCcCCCccc-------------cceeeee
Confidence 5 479999999998632 11100 00 0000111 3456899999987554445555443 2556776
Q ss_pred cCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCccccccccccccccccccccc
Q 003087 203 CHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSL 282 (849)
Q Consensus 203 ~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l 282 (849)
+.... +.|..+.+. . ...+|..+.+-|||+++||+|+||.||++.-.+.+. |..++
T Consensus 235 ~~s~g-----slq~~~e~~-l----knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~p-LAVLk------------- 290 (323)
T KOG0322|consen 235 NHSTG-----SLQIRKEIT-L----KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNP-LAVLK------------- 290 (323)
T ss_pred ccccC-----cccccceEE-e----cCCCccceEEccCCcEEeecccCCcEEEEEeccCCc-hhhhh-------------
Confidence 65310 111112111 1 124788999999999999999999999999887754 44443
Q ss_pred CCCCCCCCCCcEEEEEecC-CEEEEEEeCCcEEEEEe
Q 003087 283 FDGRTKPISDITDFAWWSD-NILILARKSSIITMIDV 318 (849)
Q Consensus 283 ~~~~~~~~~~v~~vaws~D-~~la~a~~dgti~lwdl 318 (849)
.|.+.|.+++|+|| +-+|+|+.|+.|.+|++
T Consensus 291 -----yHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 291 -----YHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred -----hhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 35578999999999 56889999999999986
No 177
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.33 E-value=1.6e-11 Score=136.66 Aligned_cols=204 Identities=15% Similarity=0.217 Sum_probs=134.4
Q ss_pred EECCCCCEEEE--EeCCCcEEEEecC--CccceecccccccccccEEEEEecC-CcccccccceeEEEEeCCCcEEEEEe
Q 003087 61 AWSESHDVLGI--VDDTHTVYFFKAN--GEEITRFTNKHLKVSLPIIGLIAQD-ETDVQRSCLCSFTVFTSDGFLHQIEI 135 (849)
Q Consensus 61 afSPDG~~LAs--~~~dgtIrlWd~~--g~~~~~l~~~~~~~~~~V~~l~fs~-~~~~~~s~~~~~~~~s~Dg~v~lw~~ 135 (849)
.|..+.++.|+ ++.-|.|-|++++ |+.--...+...+ ...|..+.|.| |. .++++++.||.|++|.+
T Consensus 586 Gfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~N-gt~vtDl~WdPFD~-------~rLAVa~ddg~i~lWr~ 657 (1012)
T KOG1445|consen 586 GFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFN-GTLVTDLHWDPFDD-------ERLAVATDDGQINLWRL 657 (1012)
T ss_pred ceeeccceEEEEecCCCceEEEEEcCCCCCCCccccccccc-CceeeecccCCCCh-------HHeeecccCceEEEEEe
Confidence 56667788875 5667899999986 5432221111111 13577777766 32 24778899999999999
Q ss_pred cCCCCcccccccccCCcceeccccCCceEEEEEcCC-CceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceec
Q 003087 136 SQDPSASISSASASSSGLTLRRQFPQNVICTDYHPE-LSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTT 214 (849)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPd-g~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~ 214 (849)
..++...... .....+.+| ...|+++.|||- ...||+++.|.| |++||+.....
T Consensus 658 ~a~gl~e~~~----tPe~~lt~h-~eKI~slRfHPLAadvLa~asyd~T-------------i~lWDl~~~~~------- 712 (1012)
T KOG1445|consen 658 TANGLPENEM----TPEKILTIH-GEKITSLRFHPLAADVLAVASYDST-------------IELWDLANAKL------- 712 (1012)
T ss_pred ccCCCCcccC----Ccceeeecc-cceEEEEEecchhhhHhhhhhccce-------------eeeeehhhhhh-------
Confidence 8876533211 112334444 446999999995 457888888864 89999987532
Q ss_pred cccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcE
Q 003087 215 QIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDIT 294 (849)
Q Consensus 215 ~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~ 294 (849)
++++.| |++.|+.+||||||+++||..-||+|+++.-.+.... ... .+++ .+ ..-.
T Consensus 713 -----~~~l~g--HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p--v~E------g~gp-------vg--tRgA 768 (1012)
T KOG1445|consen 713 -----YSRLVG--HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP--VYE------GKGP-------VG--TRGA 768 (1012)
T ss_pred -----hheecc--CcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCc--ccc------CCCC-------cc--Ccce
Confidence 123446 9999999999999999999999999999987754221 110 0000 01 1234
Q ss_pred EEEEecCCEEE-EEEeC----CcEEEEEecCC
Q 003087 295 DFAWWSDNILI-LARKS----SIITMIDVLSG 321 (849)
Q Consensus 295 ~vaws~D~~la-~a~~d----gti~lwdl~~~ 321 (849)
.|.|--||+++ +.+.| ..|.|||..+.
T Consensus 769 Ri~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 769 RILWACDGRIVIVVGFDKSSERQVQMYDAQTL 800 (1012)
T ss_pred eEEEEecCcEEEEecccccchhhhhhhhhhhc
Confidence 58898999754 34433 36888887654
No 178
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=5.2e-11 Score=137.26 Aligned_cols=198 Identities=14% Similarity=0.165 Sum_probs=120.1
Q ss_pred cceEEEEEcCCCCeEEEEeC----CeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEE-EeCCC--cEEEEec
Q 003087 11 KKQVSLFISPRGERVAVAAV----NQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGI-VDDTH--TVYFFKA 83 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~----~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs-~~~dg--tIrlWd~ 83 (849)
..+.+.+|||||+.||.++. ..|.+|+..++... .+.. ..+.....+|||||+.|+. .+.+| .|++||+
T Consensus 204 ~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~---~l~~-~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~ 279 (433)
T PRK04922 204 EPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE---LVAS-FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDL 279 (433)
T ss_pred CccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE---Eecc-CCCCccCceECCCCCEEEEEEeCCCCceEEEEEC
Confidence 45789999999999998862 26888887643211 1111 1223457899999998874 45555 5999999
Q ss_pred CCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEe--cCCCCcccccccccCCcceeccccCC
Q 003087 84 NGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEI--SQDPSASISSASASSSGLTLRRQFPQ 161 (849)
Q Consensus 84 ~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~--~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (849)
.+..+..+..+. .......|+|++... +++...+|..++|.+ .++..... ++.+.
T Consensus 280 ~~g~~~~lt~~~----~~~~~~~~spDG~~l------~f~sd~~g~~~iy~~dl~~g~~~~l----------t~~g~--- 336 (433)
T PRK04922 280 GSRQLTRLTNHF----GIDTEPTWAPDGKSI------YFTSDRGGRPQIYRVAASGGSAERL----------TFQGN--- 336 (433)
T ss_pred CCCCeEECccCC----CCccceEECCCCCEE------EEEECCCCCceEEEEECCCCCeEEe----------ecCCC---
Confidence 876666665432 123457788865421 122234556555544 33332111 12222
Q ss_pred ceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCC
Q 003087 162 NVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQG 241 (849)
Q Consensus 162 ~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG 241 (849)
...+++|||||+.||..+.++ |...|.+|++.++. ...+. +.......+|||||
T Consensus 337 ~~~~~~~SpDG~~Ia~~~~~~----------~~~~I~v~d~~~g~-~~~Lt---------------~~~~~~~p~~spdG 390 (433)
T PRK04922 337 YNARASVSPDGKKIAMVHGSG----------GQYRIAVMDLSTGS-VRTLT---------------PGSLDESPSFAPNG 390 (433)
T ss_pred CccCEEECCCCCEEEEEECCC----------CceeEEEEECCCCC-eEECC---------------CCCCCCCceECCCC
Confidence 245789999999998765543 22348889886642 11111 11234567999999
Q ss_pred CEEEEEeCC---CcEEEEecCCC
Q 003087 242 KFVATSDTN---GCLYIFEMDKD 261 (849)
Q Consensus 242 ~~LAs~s~D---gtv~LWd~~~~ 261 (849)
++|+..+.+ +.|.++++.+.
T Consensus 391 ~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 391 SMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred CEEEEEEecCCceEEEEEECCCC
Confidence 998877663 35667777654
No 179
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=2.6e-10 Score=131.63 Aligned_cols=200 Identities=11% Similarity=0.129 Sum_probs=120.0
Q ss_pred CCCEEEEEECCCCCEEEEEeC---CCcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCc-
Q 003087 54 LGASIYGAWSESHDVLGIVDD---THTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGF- 129 (849)
Q Consensus 54 ~~~v~~vafSPDG~~LAs~~~---dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~- 129 (849)
...+.+.+|||||+.||.++. +..|++||+.+.....+.... ..+.+..|+||+... +++.+.+|.
T Consensus 201 ~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~----g~~~~~~~SPDG~~l------a~~~~~~g~~ 270 (435)
T PRK05137 201 SSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFP----GMTFAPRFSPDGRKV------VMSLSQGGNT 270 (435)
T ss_pred CCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCC----CcccCcEECCCCCEE------EEEEecCCCc
Confidence 457899999999999998764 468999999865544443322 235567888876432 223456666
Q ss_pred -EEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCc
Q 003087 130 -LHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLEL 208 (849)
Q Consensus 130 -v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~ 208 (849)
|.+|++.++.... +. .+.......+|||||+.||.++... |...|.+|++.++. .
T Consensus 271 ~Iy~~d~~~~~~~~------------Lt-~~~~~~~~~~~spDG~~i~f~s~~~----------g~~~Iy~~d~~g~~-~ 326 (435)
T PRK05137 271 DIYTMDLRSGTTTR------------LT-DSPAIDTSPSYSPDGSQIVFESDRS----------GSPQLYVMNADGSN-P 326 (435)
T ss_pred eEEEEECCCCceEE------------cc-CCCCccCceeEcCCCCEEEEEECCC----------CCCeEEEEECCCCC-e
Confidence 4455655444321 12 2223356789999999998776432 22236666665431 1
Q ss_pred ccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCC---cEEEEecCCCcccccccccccccccccccccCCC
Q 003087 209 EQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNG---CLYIFEMDKDNFSLSKFACGERFDLQVADSLFDG 285 (849)
Q Consensus 209 ~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dg---tv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 285 (849)
+++.. +...+...+|||||+.||..+.++ .|.+|++.+... ..++ .+
T Consensus 327 ~~lt~--------------~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~--~~lt--------------~~ 376 (435)
T PRK05137 327 RRISF--------------GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE--RILT--------------SG 376 (435)
T ss_pred EEeec--------------CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce--Eecc--------------CC
Confidence 11210 122455789999999999887543 577788765421 2221 10
Q ss_pred CCCCCCCcEEEEEecCCE-EEEEEe-CC-----cEEEEEecCCc
Q 003087 286 RTKPISDITDFAWWSDNI-LILARK-SS-----IITMIDVLSGL 322 (849)
Q Consensus 286 ~~~~~~~v~~vaws~D~~-la~a~~-dg-----ti~lwdl~~~~ 322 (849)
..+.+.+|+|||+ |+.++. .| .|.+.|+.++.
T Consensus 377 -----~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 377 -----FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred -----CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 1245678999986 444433 22 46666665543
No 180
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.33 E-value=2.5e-11 Score=132.34 Aligned_cols=214 Identities=11% Similarity=0.117 Sum_probs=146.0
Q ss_pred CCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccceeccccccccc
Q 003087 21 RGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRFTNKHLKVS 99 (849)
Q Consensus 21 dG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~l~~~~~~~~ 99 (849)
...|+.+|+ .++|+|||... +.+.++...+...|++|.+.-...+||+++..|-|-|-.+..+...+-..+.- .
T Consensus 90 ~S~y~~sgG~~~~Vkiwdl~~---kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s--g 164 (673)
T KOG4378|consen 90 QSLYEISGGQSGCVKIWDLRA---KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS--G 164 (673)
T ss_pred cceeeeccCcCceeeehhhHH---HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCC--C
Confidence 337888886 68999999762 33333332347889999999999999999999999988886544333222211 1
Q ss_pred ccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCc-eEEEE
Q 003087 100 LPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELS-LLSVV 178 (849)
Q Consensus 100 ~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~-lLas~ 178 (849)
..|.=|.|++-... .+.+++++|+|++||+..-.. + +.+...|..+...|.|||-.. +||++
T Consensus 165 qsvRll~ys~skr~------lL~~asd~G~VtlwDv~g~sp--~---------~~~~~~HsAP~~gicfspsne~l~vsV 227 (673)
T KOG4378|consen 165 QSVRLLRYSPSKRF------LLSIASDKGAVTLWDVQGMSP--I---------FHASEAHSAPCRGICFSPSNEALLVSV 227 (673)
T ss_pred CeEEEeecccccce------eeEeeccCCeEEEEeccCCCc--c---------cchhhhccCCcCcceecCCccceEEEe
Confidence 34667888873221 244569999999999863211 1 122335677789999999655 67888
Q ss_pred ecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEec
Q 003087 179 SNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEM 258 (849)
Q Consensus 179 g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~ 258 (849)
|-|. .|.++|..+......|. -..+..+|+|+|+|.+|+.|...|.|.-+|+
T Consensus 228 G~Dk-------------ki~~yD~~s~~s~~~l~---------------y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~ 279 (673)
T KOG4378|consen 228 GYDK-------------KINIYDIRSQASTDRLT---------------YSHPLSTVAFSECGTYLCAGNSKGELIAYDM 279 (673)
T ss_pred cccc-------------eEEEeecccccccceee---------------ecCCcceeeecCCceEEEeecCCceEEEEec
Confidence 8885 47888876532111111 1236679999999999999999999999999
Q ss_pred CCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCC
Q 003087 259 DKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDN 302 (849)
Q Consensus 259 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~ 302 (849)
......+.... .|...|..|+|-+--
T Consensus 280 R~~k~Pv~v~s------------------ah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 280 RSTKAPVAVRS------------------AHDASVTRVAFQPSP 305 (673)
T ss_pred ccCCCCceEee------------------ecccceeEEEeeecc
Confidence 86533222211 355679999997654
No 181
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=1.9e-10 Score=132.39 Aligned_cols=215 Identities=10% Similarity=0.099 Sum_probs=126.2
Q ss_pred eEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEe---CCCcEEEEecCCccceecccccccccccEEEEEec
Q 003087 32 QVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVD---DTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQ 108 (849)
Q Consensus 32 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~---~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs 108 (849)
.|.+||.++.... .++ .+...+.+.+|||||+.||..+ .+..|++|++.+.....+.... ..+.++.|+
T Consensus 180 ~l~~~d~dg~~~~---~lt-~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~----~~~~~~~~S 251 (429)
T PRK03629 180 ELRVSDYDGYNQF---VVH-RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP----RHNGAPAFS 251 (429)
T ss_pred eEEEEcCCCCCCE---Eee-cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC----CCcCCeEEC
Confidence 4666665432211 222 2345678999999999999764 3457999999865434443211 123457888
Q ss_pred CCcccccccceeEEEEeCCC--cEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCcc
Q 003087 109 DETDVQRSCLCSFTVFTSDG--FLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSL 186 (849)
Q Consensus 109 ~~~~~~~s~~~~~~~~s~Dg--~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~ 186 (849)
||+.... ++.+.+| .|.+||+.++..... ..+ ...+...+|||||+.|+.++..+
T Consensus 252 PDG~~La------~~~~~~g~~~I~~~d~~tg~~~~l------------t~~-~~~~~~~~wSPDG~~I~f~s~~~---- 308 (429)
T PRK03629 252 PDGSKLA------FALSKTGSLNLYVMDLASGQIRQV------------TDG-RSNNTEPTWFPDSQNLAYTSDQA---- 308 (429)
T ss_pred CCCCEEE------EEEcCCCCcEEEEEECCCCCEEEc------------cCC-CCCcCceEECCCCCEEEEEeCCC----
Confidence 8765321 1223445 477788876554222 112 23478899999999998776553
Q ss_pred ccCCCCCCceeeEEEe--cCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCC---CcEEEEecCCC
Q 003087 187 TSSGNSGPCCISLWRR--CHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTN---GCLYIFEMDKD 261 (849)
Q Consensus 187 ~~~~~~G~~~I~lW~~--~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~D---gtv~LWd~~~~ 261 (849)
|. ..+|.+ .++. ..++. . +...+...+|||||++||.++.+ ..|.+||+.++
T Consensus 309 ------g~--~~Iy~~d~~~g~-~~~lt---------~-----~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g 365 (429)
T PRK03629 309 ------GR--PQVYKVNINGGA-PQRIT---------W-----EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 365 (429)
T ss_pred ------CC--ceEEEEECCCCC-eEEee---------c-----CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence 22 345544 3321 11111 0 11234578999999999987654 35778898876
Q ss_pred cccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCc---EEEEEecCC
Q 003087 262 NFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSI---ITMIDVLSG 321 (849)
Q Consensus 262 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgt---i~lwdl~~~ 321 (849)
.. ..++ .. ....+.+|+|||+ |+.++.+|. +.++++.+.
T Consensus 366 ~~--~~Lt--------------~~-----~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 366 GV--QVLT--------------DT-----FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR 408 (429)
T ss_pred Ce--EEeC--------------CC-----CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 32 2222 10 1123467999997 555665653 667777554
No 182
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=7.4e-11 Score=135.70 Aligned_cols=189 Identities=14% Similarity=0.172 Sum_probs=117.0
Q ss_pred cceEEEEEcCCCCeEEEEeC----CeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEE-EEeCCCcEEEEe--c
Q 003087 11 KKQVSLFISPRGERVAVAAV----NQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLG-IVDDTHTVYFFK--A 83 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~----~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LA-s~~~dgtIrlWd--~ 83 (849)
+.+.+.+|||||+.||.+++ ..|.+|+..++. .. .+.. ..+.+...+|||||+.|| +.+.+|..+||. +
T Consensus 196 ~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~--~~-~l~~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~ 271 (427)
T PRK02889 196 EPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR--RR-VVAN-FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNA 271 (427)
T ss_pred CCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC--EE-Eeec-CCCCccceEECCCCCEEEEEEccCCCceEEEEEC
Confidence 56789999999999998873 258888876432 11 1221 123456899999999998 467788877775 4
Q ss_pred CCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCC-CcccccccccCCcceeccccCCc
Q 003087 84 NGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDP-SASISSASASSSGLTLRRQFPQN 162 (849)
Q Consensus 84 ~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~ 162 (849)
.|+.+.++..+. ..+.+..|+||+... +++...+|...+|.+..+. .... .++.+. .
T Consensus 272 ~~~~~~~lt~~~----~~~~~~~wSpDG~~l------~f~s~~~g~~~Iy~~~~~~g~~~~---------lt~~g~---~ 329 (427)
T PRK02889 272 DGSGLRRLTQSS----GIDTEPFFSPDGRSI------YFTSDRGGAPQIYRMPASGGAAQR---------VTFTGS---Y 329 (427)
T ss_pred CCCCcEECCCCC----CCCcCeEEcCCCCEE------EEEecCCCCcEEEEEECCCCceEE---------EecCCC---C
Confidence 566656665432 123456788865422 1222345777888765322 1111 112222 2
Q ss_pred eEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCC
Q 003087 163 VICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGK 242 (849)
Q Consensus 163 V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~ 242 (849)
....+|||||+.||.++.++ |...|.+|++.++. ...+.. .......+|||||+
T Consensus 330 ~~~~~~SpDG~~Ia~~s~~~----------g~~~I~v~d~~~g~-~~~lt~---------------~~~~~~p~~spdg~ 383 (427)
T PRK02889 330 NTSPRISPDGKLLAYISRVG----------GAFKLYVQDLATGQ-VTALTD---------------TTRDESPSFAPNGR 383 (427)
T ss_pred cCceEECCCCCEEEEEEccC----------CcEEEEEEECCCCC-eEEccC---------------CCCccCceECCCCC
Confidence 44678999999998776654 22358889887642 111111 11335789999999
Q ss_pred EEEEEeCCC
Q 003087 243 FVATSDTNG 251 (849)
Q Consensus 243 ~LAs~s~Dg 251 (849)
.|+.++.++
T Consensus 384 ~l~~~~~~~ 392 (427)
T PRK02889 384 YILYATQQG 392 (427)
T ss_pred EEEEEEecC
Confidence 998887654
No 183
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.31 E-value=2.6e-10 Score=121.28 Aligned_cols=238 Identities=12% Similarity=0.120 Sum_probs=158.8
Q ss_pred ceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeecC--CCCEEEEEECCCCCEEEEEeCCCc--EEEEecC-Cc
Q 003087 12 KQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTG--LGASIYGAWSESHDVLGIVDDTHT--VYFFKAN-GE 86 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~--~~~v~~vafSPDG~~LAs~~~dgt--IrlWd~~-g~ 86 (849)
.+.-..|..|+..|++|+-+.-++....+ .+++...+ .-.|.-.=|| ..++|.++.+.. +++.+.. +.
T Consensus 7 ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~-----~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 7 TINFIGFNQDSTLLSVGSKDGYKIFSCSP-----FEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred ceeeeeeccceeEEEccCCCceeEEecCc-----hHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCc
Confidence 35666799999999999977678887553 22232222 2345566777 567777766554 6776664 22
Q ss_pred cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT 166 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv 166 (849)
.+=.+ .+...|.+|.+.-++ +.++ -.+.|.++|+..-+....++ +.. -++.++.++
T Consensus 80 ~ICe~-----~fpt~IL~VrmNr~R---------LvV~-Lee~IyIydI~~MklLhTI~--------t~~-~n~~gl~Al 135 (391)
T KOG2110|consen 80 TICEI-----FFPTSILAVRMNRKR---------LVVC-LEESIYIYDIKDMKLLHTIE--------TTP-PNPKGLCAL 135 (391)
T ss_pred eEEEE-----ecCCceEEEEEccce---------EEEE-EcccEEEEecccceeehhhh--------ccC-CCccceEee
Confidence 21111 123456666665433 3332 23449999998766655544 110 234578899
Q ss_pred EEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEE
Q 003087 167 DYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVAT 246 (849)
Q Consensus 167 afsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs 246 (849)
++++++++||--++-. .|. |.+||...- +++ .++.. |.+.+-+++|||||++|||
T Consensus 136 S~n~~n~ylAyp~s~t---------~Gd--V~l~d~~nl---~~v------~~I~a-----H~~~lAalafs~~G~llAT 190 (391)
T KOG2110|consen 136 SPNNANCYLAYPGSTT---------SGD--VVLFDTINL---QPV------NTINA-----HKGPLAALAFSPDGTLLAT 190 (391)
T ss_pred ccCCCCceEEecCCCC---------Cce--EEEEEcccc---eee------eEEEe-----cCCceeEEEECCCCCEEEE
Confidence 9999999998754432 365 899998652 221 22222 7779999999999999999
Q ss_pred EeCCCc-EEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecCCc
Q 003087 247 SDTNGC-LYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVLSGL 322 (849)
Q Consensus 247 ~s~Dgt-v~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~~ 322 (849)
+|.-|| ||++.+++++. +..|. ||--...+++++|+||+. |+.++..+||.|+.+..-.
T Consensus 191 ASeKGTVIRVf~v~~G~k-l~eFR----------------RG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 191 ASEKGTVIRVFSVPEGQK-LYEFR----------------RGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred eccCceEEEEEEcCCccE-eeeee----------------CCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 999997 57999998865 45554 122345689999999997 5567888999999998655
No 184
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.31 E-value=3.5e-11 Score=134.65 Aligned_cols=212 Identities=14% Similarity=0.162 Sum_probs=154.6
Q ss_pred CEEEEEECCCCCEEEEEeCCCcEEEEecC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEE
Q 003087 56 ASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIE 134 (849)
Q Consensus 56 ~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~ 134 (849)
-|..++|-|||..|..|..| .+.++|++ |..+.++.+|. ..|..|+++.++.. |++++.|..|.+|+
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHK----DtVycVAys~dGkr-------FASG~aDK~VI~W~ 81 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHK----DTVYCVAYAKDGKR-------FASGSADKSVIIWT 81 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCccccccccccc----ceEEEEEEccCCce-------eccCCCceeEEEec
Confidence 67889999999999988776 48899997 87777776554 57999999887764 45558999999998
Q ss_pred ecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceec
Q 003087 135 ISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTT 214 (849)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~ 214 (849)
-...+...+ .|...|.|+.|.|=...||+++-.+ ..+|..+... +
T Consensus 82 ~klEG~LkY--------------SH~D~IQCMsFNP~~h~LasCsLsd--------------FglWS~~qK~----V--- 126 (1081)
T KOG1538|consen 82 SKLEGILKY--------------SHNDAIQCMSFNPITHQLASCSLSD--------------FGLWSPEQKS----V--- 126 (1081)
T ss_pred ccccceeee--------------ccCCeeeEeecCchHHHhhhcchhh--------------ccccChhhhh----H---
Confidence 765554333 2456799999999999999887665 4578765431 1
Q ss_pred cccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcE
Q 003087 215 QIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDIT 294 (849)
Q Consensus 215 ~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~ 294 (849)
.+++ ....|.+.+|.-||++||-|..||||.|-+-.+... ++.-.. ++...+|+
T Consensus 127 ------~K~k---ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek-~~I~Rp----------------gg~Nspiw 180 (1081)
T KOG1538|consen 127 ------SKHK---SSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK-VKIERP----------------GGSNSPIW 180 (1081)
T ss_pred ------Hhhh---hheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc-eEEeCC----------------CCCCCCce
Confidence 0111 234678999999999999999999999987665432 222110 23446799
Q ss_pred EEEEecCC------EEEEEEeCCcEEEEEecCCc----cccccCC-----CCCCeEEEEEe
Q 003087 295 DFAWWSDN------ILILARKSSIITMIDVLSGL----KVKETDP-----KLRGHVFLLES 340 (849)
Q Consensus 295 ~vaws~D~------~la~a~~dgti~lwdl~~~~----~l~~~~~-----~~~g~~~~Le~ 340 (849)
+|+|+|.. .++++.++.|+..+.+.+.. .-++-+| -.+|++.++-+
T Consensus 181 si~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGG 241 (1081)
T KOG1538|consen 181 SICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGG 241 (1081)
T ss_pred EEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEcc
Confidence 99999942 58899999999999998653 2234455 23677666544
No 185
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=2.8e-10 Score=131.23 Aligned_cols=217 Identities=12% Similarity=0.103 Sum_probs=126.0
Q ss_pred eEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCC---CcEEEEecCCccceecccccccccccEEEEEec
Q 003087 32 QVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDT---HTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQ 108 (849)
Q Consensus 32 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~d---gtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs 108 (849)
+|.+||.++. .+ ..++. +...+.+.+|||||+.||.++.+ ..|++||+.+.....+.... ....+++|+
T Consensus 185 ~l~i~D~~g~--~~-~~lt~-~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~----g~~~~~~~S 256 (433)
T PRK04922 185 ALQVADSDGY--NP-QTILR-SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFR----GINGAPSFS 256 (433)
T ss_pred EEEEECCCCC--Cc-eEeec-CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC----CCccCceEC
Confidence 5777775432 11 12222 34567899999999999988743 46999999865544443221 123467888
Q ss_pred CCcccccccceeEEEEeCCC--cEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCcc
Q 003087 109 DETDVQRSCLCSFTVFTSDG--FLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSL 186 (849)
Q Consensus 109 ~~~~~~~s~~~~~~~~s~Dg--~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~ 186 (849)
|++... +++.+.+| .|.+|++.++..... . .+......++|||||+.|+.++..+
T Consensus 257 pDG~~l------~~~~s~~g~~~Iy~~d~~~g~~~~l------------t-~~~~~~~~~~~spDG~~l~f~sd~~---- 313 (433)
T PRK04922 257 PDGRRL------ALTLSRDGNPEIYVMDLGSRQLTRL------------T-NHFGIDTEPTWAPDGKSIYFTSDRG---- 313 (433)
T ss_pred CCCCEE------EEEEeCCCCceEEEEECCCCCeEEC------------c-cCCCCccceEECCCCCEEEEEECCC----
Confidence 866422 12334555 588888876553221 1 1122346789999999998776442
Q ss_pred ccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCC---cEEEEecCCCcc
Q 003087 187 TSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNG---CLYIFEMDKDNF 263 (849)
Q Consensus 187 ~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dg---tv~LWd~~~~~~ 263 (849)
|...|..+++.++. .+.+. . +......++|||||+.||..+.++ .|.+|++.++..
T Consensus 314 ------g~~~iy~~dl~~g~-~~~lt----------~----~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~ 372 (433)
T PRK04922 314 ------GRPQIYRVAASGGS-AERLT----------F----QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV 372 (433)
T ss_pred ------CCceEEEEECCCCC-eEEee----------c----CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe
Confidence 22124444444321 11111 0 112344689999999999876543 588999987632
Q ss_pred cccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeC-C--cEEEEEecCC
Q 003087 264 SLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKS-S--IITMIDVLSG 321 (849)
Q Consensus 264 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~d-g--ti~lwdl~~~ 321 (849)
..+. ++ ....+.+|+|||+ ++.++.+ | .|.++++.++
T Consensus 373 --~~Lt--------------~~-----~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 373 --RTLT--------------PG-----SLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred --EECC--------------CC-----CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 2222 11 1123468999997 4444432 3 4666776543
No 186
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=1.9e-10 Score=122.25 Aligned_cols=265 Identities=15% Similarity=0.128 Sum_probs=174.2
Q ss_pred cccceEEEEEcCCCCeEEEEeCC-eEEEEecCC----CCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEec
Q 003087 9 KTKKQVSLFISPRGERVAVAAVN-QVTILQKDD----DYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKA 83 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas~~-~i~iw~~~~----~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~ 83 (849)
+.+-|++|-||.||++||+|+|+ .+++|+.+. ...+|++....++...|.+++|.-..++|-||+.+|+|-+-|+
T Consensus 55 H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDi 134 (609)
T KOG4227|consen 55 HTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDI 134 (609)
T ss_pred hccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeec
Confidence 44889999999999999999975 799998652 1234555433333578999999999999999999999999999
Q ss_pred CCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCce
Q 003087 84 NGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNV 163 (849)
Q Consensus 84 ~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V 163 (849)
..++-.....+. .....|..+.-+|. ++.|++.+.+|.|.+||+...+.. . ..+ +...++...
T Consensus 135 Et~qsi~V~~~~-~~~~~VY~m~~~P~-------DN~~~~~t~~~~V~~~D~Rd~~~~--~------~~~-~~AN~~~~F 197 (609)
T KOG4227|consen 135 ETKQSIYVANEN-NNRGDVYHMDQHPT-------DNTLIVVTRAKLVSFIDNRDRQNP--I------SLV-LPANSGKNF 197 (609)
T ss_pred ccceeeeeeccc-CcccceeecccCCC-------CceEEEEecCceEEEEeccCCCCC--C------cee-eecCCCccc
Confidence 866533332222 11246777776662 346788899999999998754321 0 011 222455668
Q ss_pred EEEEEcCCCc-eEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCcc-ccccceEEEccCC
Q 003087 164 ICTDYHPELS-LLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEV-QLAHPKVLISPQG 241 (849)
Q Consensus 164 ~svafsPdg~-lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h-~~~V~~vafSPDG 241 (849)
.++-|+|.-. +|++++.-+ ++.+||+.-.. .++. +. +++ +|+.. ...-.++.|||.|
T Consensus 198 ~t~~F~P~~P~Li~~~~~~~-------------G~~~~D~R~~~--~~~~--~~-~~~---~~L~~~~~~~M~~~~~~~G 256 (609)
T KOG4227|consen 198 YTAEFHPETPALILVNSETG-------------GPNVFDRRMQA--RPVY--QR-SMF---KGLPQENTEWMGSLWSPSG 256 (609)
T ss_pred eeeeecCCCceeEEeccccC-------------CCCceeecccc--chHH--hh-hcc---ccCcccchhhhheeeCCCC
Confidence 9999999765 455544332 26789876431 1111 10 111 12101 1122578999999
Q ss_pred CEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecCC
Q 003087 242 KFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSG 321 (849)
Q Consensus 242 ~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~~ 321 (849)
+.+.+.-.-..--++|+...+|.+-++. +.++ ++ -..-.+.+.+|-.|-.+++|+.+=.|.||.++..
T Consensus 257 ~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~---GY--------~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 257 NQFMSIRRGKCPLYFDFISQRCFVLKSD-HNPN---GY--------CNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRA 324 (609)
T ss_pred CeehhhhccCCCEEeeeecccceeEecc-CCCC---cc--------eeeeeeeeeeeecceeeeccCcccceEEEecCCC
Confidence 9999888877888899987655332221 0110 11 0112466788988877889999999999999865
Q ss_pred cc
Q 003087 322 LK 323 (849)
Q Consensus 322 ~~ 323 (849)
..
T Consensus 325 ~d 326 (609)
T KOG4227|consen 325 ND 326 (609)
T ss_pred cc
Confidence 43
No 187
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=4.4e-10 Score=129.31 Aligned_cols=162 Identities=18% Similarity=0.156 Sum_probs=101.0
Q ss_pred CCCEEEEEECCCCCEEEEEeCC---CcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcE
Q 003087 54 LGASIYGAWSESHDVLGIVDDT---HTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFL 130 (849)
Q Consensus 54 ~~~v~~vafSPDG~~LAs~~~d---gtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v 130 (849)
...+.+.+|||||+.||.++.+ ..|++||+.+.....+.... ..+.+.+|+||+... +++.+.+|..
T Consensus 195 ~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~----g~~~~~~~SPDG~~l------a~~~~~~g~~ 264 (427)
T PRK02889 195 PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK----GSNSAPAWSPDGRTL------AVALSRDGNS 264 (427)
T ss_pred CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC----CCccceEECCCCCEE------EEEEccCCCc
Confidence 4567899999999999987743 45999999865544443221 234567888876432 2234678888
Q ss_pred EEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCC-cCcc
Q 003087 131 HQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHN-LELE 209 (849)
Q Consensus 131 ~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~-~~~~ 209 (849)
++|.+...... . ..+. .+...+.+..|||||+.|+.++..+ |. ..+|.++.. ...+
T Consensus 265 ~Iy~~d~~~~~-~---------~~lt-~~~~~~~~~~wSpDG~~l~f~s~~~----------g~--~~Iy~~~~~~g~~~ 321 (427)
T PRK02889 265 QIYTVNADGSG-L---------RRLT-QSSGIDTEPFFSPDGRSIYFTSDRG----------GA--PQIYRMPASGGAAQ 321 (427)
T ss_pred eEEEEECCCCC-c---------EECC-CCCCCCcCeEEcCCCCEEEEEecCC----------CC--cEEEEEECCCCceE
Confidence 88877542211 0 1121 1122356788999999998776542 22 456766421 1111
Q ss_pred cceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCC---cEEEEecCCCc
Q 003087 210 QLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNG---CLYIFEMDKDN 262 (849)
Q Consensus 210 ~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dg---tv~LWd~~~~~ 262 (849)
.+. ..+ ......+|||||++||..+.++ .|.+||+.+++
T Consensus 322 ~lt----------~~g----~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~ 363 (427)
T PRK02889 322 RVT----------FTG----SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ 363 (427)
T ss_pred EEe----------cCC----CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCC
Confidence 111 011 1234689999999999887665 69999998764
No 188
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.29 E-value=2.7e-11 Score=133.08 Aligned_cols=204 Identities=13% Similarity=0.167 Sum_probs=128.8
Q ss_pred eEEEE-eCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccceecccccccccccE
Q 003087 24 RVAVA-AVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPI 102 (849)
Q Consensus 24 ~LAsa-s~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V 102 (849)
.++.. +||.+.|.+... +. .+-...|.+.+.+..|||||.=|.+++.||.|++|..+|-...++-. ...+|
T Consensus 77 ~~~i~s~DGkf~il~k~~---rV-E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q----~~~~v 148 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKSA---RV-ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQ----NEESI 148 (737)
T ss_pred eEEEEcCCceEEEecccc---hh-hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhh----cCcee
Confidence 44444 578888877432 11 11112236778999999999999999999999999999976444422 23579
Q ss_pred EEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCC
Q 003087 103 IGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTD 182 (849)
Q Consensus 103 ~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~ 182 (849)
.++++.|++... ++ ..-|.+.+=-+.. . ......+ .|..-|.++.|+|...++++||.|
T Consensus 149 ~c~~W~p~S~~v------l~--c~g~h~~IKpL~~--n---------~k~i~Wk-AHDGiiL~~~W~~~s~lI~sgGED- 207 (737)
T KOG1524|consen 149 RCARWAPNSNSI------VF--CQGGHISIKPLAA--N---------SKIIRWR-AHDGLVLSLSWSTQSNIIASGGED- 207 (737)
T ss_pred EEEEECCCCCce------EE--ecCCeEEEeeccc--c---------cceeEEe-ccCcEEEEeecCccccceeecCCc-
Confidence 999997754321 11 1222222211110 0 1111223 345569999999999999999888
Q ss_pred CCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCc
Q 003087 183 TSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDN 262 (849)
Q Consensus 183 t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~ 262 (849)
|..++||..+. +++..+ . |..+|.+|+|.|| +..|.+|. .+.+
T Consensus 208 ------------~kfKvWD~~G~----~Lf~S~---------~--~ey~ITSva~npd-~~~~v~S~---------nt~R 250 (737)
T KOG1524|consen 208 ------------FRFKIWDAQGA----NLFTSA---------A--EEYAITSVAFNPE-KDYLLWSY---------NTAR 250 (737)
T ss_pred ------------eeEEeecccCc----ccccCC---------h--hccceeeeeeccc-cceeeeee---------eeee
Confidence 45799998774 333221 1 7789999999999 66664443 3321
Q ss_pred ccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEE
Q 003087 263 FSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITM 315 (849)
Q Consensus 263 ~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~l 315 (849)
+ .+ .-.+.|..++||+||. ++.|...|-+-+
T Consensus 251 ~--~~--------------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 251 F--SS--------------------PRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred e--cC--------------------CCccceEEEEEcCCCceeeccccCceEEE
Confidence 1 01 1135689999999996 555666665543
No 189
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.28 E-value=2.2e-10 Score=122.33 Aligned_cols=207 Identities=11% Similarity=0.096 Sum_probs=135.1
Q ss_pred CCCCEEEEEECC-CCCEEEEEeCCCcEEEEecC-Cccceecccc---cccccccEEEEEecCCcccccccceeEEEEeCC
Q 003087 53 GLGASIYGAWSE-SHDVLGIVDDTHTVYFFKAN-GEEITRFTNK---HLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSD 127 (849)
Q Consensus 53 ~~~~v~~vafSP-DG~~LAs~~~dgtIrlWd~~-g~~~~~l~~~---~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~D 127 (849)
|.+.|..++|+| +...|||||.|.||.||.+. +.....+... ..++...|--|++.|... +-+++++.|
T Consensus 80 Ht~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~------NVLlsag~D 153 (472)
T KOG0303|consen 80 HTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP------NVLLSAGSD 153 (472)
T ss_pred ccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch------hhHhhccCC
Confidence 477899999999 67889999999999999985 3221222100 112335576777777221 124445899
Q ss_pred CcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcC
Q 003087 128 GFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLE 207 (849)
Q Consensus 128 g~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~ 207 (849)
.+|.+||+.+|...- ++. |+.-|+++.|+-||.+|+++..|+ .|++||...+.
T Consensus 154 n~v~iWnv~tgeali-----------~l~--hpd~i~S~sfn~dGs~l~TtckDK-------------kvRv~dpr~~~- 206 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALI-----------TLD--HPDMVYSMSFNRDGSLLCTTCKDK-------------KVRVIDPRRGT- 206 (472)
T ss_pred ceEEEEeccCCceee-----------ecC--CCCeEEEEEeccCCceeeeecccc-------------eeEEEcCCCCc-
Confidence 999999999887532 222 577799999999999999998886 38999987642
Q ss_pred cccceeccccceeeccCCCccccccceEEEccCCCEEEEEeC----CCcEEEEecCCCcccccccccccccccccccccC
Q 003087 208 LEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDT----NGCLYIFEMDKDNFSLSKFACGERFDLQVADSLF 283 (849)
Q Consensus 208 ~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~----Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~ 283 (849)
.+.. + ..|.| + .-..+-|=-+|. ++|.++ +..+-|||..+....+ . .++ |-
T Consensus 207 --~v~e----~--~~heG--~--k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~---~--~~e-------lD 261 (472)
T KOG0303|consen 207 --VVSE----G--VAHEG--A--KPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPI---A--LQE-------LD 261 (472)
T ss_pred --Eeee----c--ccccC--C--CcceeEEeccCc-eeeeccccccccceeccCcccccCcc---e--eEE-------ec
Confidence 1111 1 12233 1 234667778999 666665 5689999998764321 1 111 11
Q ss_pred CCCCCCCCCcEEEEEecCCE--EEEEEeCCcEEEEEecCCc
Q 003087 284 DGRTKPISDITDFAWWSDNI--LILARKSSIITMIDVLSGL 322 (849)
Q Consensus 284 ~~~~~~~~~v~~vaws~D~~--la~a~~dgti~lwdl~~~~ 322 (849)
..++|.-=-|-+|.. .+.|..||.|+-+.+..-.
T Consensus 262 -----tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 262 -----TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred -----cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 113343223334554 3478899999999987654
No 190
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.25 E-value=1.7e-09 Score=113.29 Aligned_cols=265 Identities=15% Similarity=0.174 Sum_probs=150.1
Q ss_pred EEEcCCCCeEEEEeCCeEEEEecCCCC---------------------Ccceee-----------------ee-ecCCCC
Q 003087 16 LFISPRGERVAVAAVNQVTILQKDDDY---------------------QEPCGI-----------------FN-CTGLGA 56 (849)
Q Consensus 16 lafSPdG~~LAsas~~~i~iw~~~~~~---------------------~~~~~~-----------------~~-~~~~~~ 56 (849)
-.|||+|++||++++-.+.|+|...-. -..++. +. ..|..+
T Consensus 14 c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ag 93 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAG 93 (447)
T ss_pred eeECCCCCeeeeeeeeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCc
Confidence 469999999999987677676643200 000000 00 124677
Q ss_pred EEEEEECCCC-CEEEEEeCCCcEEEEecCCccceecccccccccccEEEEEecCCccccccc---ce-------------
Q 003087 57 SIYGAWSESH-DVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSC---LC------------- 119 (849)
Q Consensus 57 v~~vafSPDG-~~LAs~~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~---~~------------- 119 (849)
+.++.||||| .+|-+.+-|-.|.||.+..+....+.-. + ..+-+++|.+|+...+.. +|
T Consensus 94 ls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~p--K--~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 94 LSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHP--K--TNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred ceeeeECCCcceEeeeecceeEEEEEEeccceeEEeccc--c--cCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence 8899999999 5556778899999999987765555321 2 235678888765322111 00
Q ss_pred ---eEE---------EEeCCCc-EEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCcc
Q 003087 120 ---SFT---------VFTSDGF-LHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSL 186 (849)
Q Consensus 120 ---~~~---------~~s~Dg~-v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~ 186 (849)
+|. -|+.||. +-+||--..-..-++ +-.-+|..++|||-|++||+|+.|+.+++
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY-------------e~~lG~k~v~wsP~~qflavGsyD~~lrv 236 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY-------------ERGLGLKFVEWSPCNQFLAVGSYDQMLRV 236 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEEEecchhhheeeee-------------eeccceeEEEeccccceEEeeccchhhhh
Confidence 011 1233333 345553211111111 11237999999999999999999975443
Q ss_pred ccCCCCCCceeeEEEecCC----------------------------------cCcc--------cceeccc----ccee
Q 003087 187 TSSGNSGPCCISLWRRCHN----------------------------------LELE--------QLYTTQI----EGLY 220 (849)
Q Consensus 187 ~~~~~~G~~~I~lW~~~~~----------------------------------~~~~--------~l~~~~~----~~~~ 220 (849)
-. .--|.+.+. .+++ .+...+. ...+
T Consensus 237 ln--------h~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~l 308 (447)
T KOG4497|consen 237 LN--------HFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKL 308 (447)
T ss_pred hc--------eeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecc
Confidence 21 012544321 0000 0000000 0000
Q ss_pred eccCCCc-cccccceEEEccCCCEEEEEeC--CCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEE
Q 003087 221 CEPKGHE-VQLAHPKVLISPQGKFVATSDT--NGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFA 297 (849)
Q Consensus 221 ~~~~g~~-h~~~V~~vafSPDG~~LAs~s~--Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~va 297 (849)
..+.+.. -.-++..++||||.+++||-.. -..+-|||+.+.+. ++... ...+|..+-
T Consensus 309 kp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l----~avLi----------------Qk~piraf~ 368 (447)
T KOG4497|consen 309 KPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKL----HAVLI----------------QKHPIRAFE 368 (447)
T ss_pred cCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhh----hhhhh----------------hccceeEEE
Confidence 0000000 1236889999999999999754 46889999987532 22111 124688889
Q ss_pred EecCC-EEEEEEeCCcEEEEEecCCcccc
Q 003087 298 WWSDN-ILILARKSSIITMIDVLSGLKVK 325 (849)
Q Consensus 298 ws~D~-~la~a~~dgti~lwdl~~~~~l~ 325 (849)
|-|.. ++++......+.+|...+-..+.
T Consensus 369 WdP~~prL~vctg~srLY~W~psg~~~V~ 397 (447)
T KOG4497|consen 369 WDPGRPRLVVCTGKSRLYFWAPSGPRVVG 397 (447)
T ss_pred eCCCCceEEEEcCCceEEEEcCCCceEEe
Confidence 98875 57766555568899877655443
No 191
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=6.2e-10 Score=129.54 Aligned_cols=248 Identities=15% Similarity=0.155 Sum_probs=157.6
Q ss_pred EEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCC---EEEEEeCCCcEEEEecC-Ccccee
Q 003087 15 SLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHD---VLGIVDDTHTVYFFKAN-GEEITR 90 (849)
Q Consensus 15 slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~---~LAs~~~dgtIrlWd~~-g~~~~~ 90 (849)
.-+||+|++++....++.|+|.....+. .+..+ ..+...+.++.+-|... ++-+++.||+|++||.. |.++.+
T Consensus 21 ~avfSnD~k~l~~~~~~~V~VyS~~Tg~--~i~~l-~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt 97 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCTGNFVKVYSTATGE--CITSL-EDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKT 97 (792)
T ss_pred ccccccCCcEEEEeeCCEEEEEecchHh--hhhhc-ccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEE
Confidence 3469999999999999999999866431 11111 22366778888877554 56689999999999986 555544
Q ss_pred cccccccccccEEEEEecC---C-c-cc-------------------c---------------------------cccce
Q 003087 91 FTNKHLKVSLPIIGLIAQD---E-T-DV-------------------Q---------------------------RSCLC 119 (849)
Q Consensus 91 l~~~~~~~~~~V~~l~fs~---~-~-~~-------------------~---------------------------~s~~~ 119 (849)
.... ..+.++.+.| + . .+ . -....
T Consensus 98 ~~~~-----~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~g 172 (792)
T KOG1963|consen 98 FDNN-----LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSG 172 (792)
T ss_pred EecC-----CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCc
Confidence 4322 1122222211 0 0 00 0 00001
Q ss_pred eEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeE
Q 003087 120 SFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISL 199 (849)
Q Consensus 120 ~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~l 199 (849)
.|+.+..+..+.+|++..+. ..+.. .....+|...++++++||.++.+|+|..|| . |.+
T Consensus 173 e~~~i~~~~~~~~~~v~~~~-~~~~~-------~~~~~~Htf~~t~~~~spn~~~~Aa~d~dG-----------r--I~v 231 (792)
T KOG1963|consen 173 EFKGIVHMCKIHIYFVPKHT-KHTSS-------RDITVHHTFNITCVALSPNERYLAAGDSDG-----------R--ILV 231 (792)
T ss_pred eEEEEEEeeeEEEEEecccc-eeecc-------chhhhhhcccceeEEeccccceEEEeccCC-----------c--EEE
Confidence 12223333445666665433 11110 011124444589999999999999887775 2 888
Q ss_pred EEecCC-cCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCccccccccccccccccc
Q 003087 200 WRRCHN-LELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQV 278 (849)
Q Consensus 200 W~~~~~-~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~ 278 (849)
|+-.+. .+-... . ...- |.+.|.+++||+||.+|.|||..|.+-+|.+.++.. +|-
T Consensus 232 w~d~~~~~~~~t~------t---~lHW--H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k---qfL--------- 288 (792)
T KOG1963|consen 232 WRDFGSSDDSETC------T---LLHW--HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK---QFL--------- 288 (792)
T ss_pred Eeccccccccccc------e---EEEe--cccccceeEEecCCceEeecccceEEEEEeecCCCc---ccc---------
Confidence 987662 111110 0 1112 788999999999999999999999999999998743 432
Q ss_pred ccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecCCc
Q 003087 279 ADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVLSGL 322 (849)
Q Consensus 279 ~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~~ 322 (849)
| .-.++|..+.||||+. .++.-.|+.|.+....++.
T Consensus 289 -----P---RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~ 325 (792)
T KOG1963|consen 289 -----P---RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLE 325 (792)
T ss_pred -----c---ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchh
Confidence 0 1235789999999986 4566779999999887775
No 192
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.20 E-value=5.2e-11 Score=136.54 Aligned_cols=252 Identities=10% Similarity=0.100 Sum_probs=166.0
Q ss_pred cccceEEEEEcCCCCeEEEEeCC-eEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cc
Q 003087 9 KTKKQVSLFISPRGERVAVAAVN-QVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GE 86 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~ 86 (849)
+++.|+.++|...|.+|.+|+|+ -|+||..++. .....+.+ +.+.++.+|-|.+..++|+++.|..||+|.+. |.
T Consensus 189 H~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~--~~lAs~rG-hs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~ 265 (1113)
T KOG0644|consen 189 HRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA--RCLASCRG-HSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA 265 (1113)
T ss_pred hhhheeeeeeccccceEeecCccceeeeeeccch--hhhccCCC-CccccchhccchhhhhhhhcccCceEEEEecCCCc
Confidence 56889999999999999999976 6899996653 23334432 37789999999999999999999999999996 66
Q ss_pred cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT 166 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv 166 (849)
.+..+.+|. ++|.+++|+|-. .+ +.||++++||..-... .+. -.+..+.+ +.-+-++
T Consensus 266 pvsvLrght----gavtaiafsP~~---ss--------s~dgt~~~wd~r~~~~--~y~----prp~~~~~--~~~~~s~ 322 (1113)
T KOG0644|consen 266 PVSVLRGHT----GAVTAIAFSPRA---SS--------SDDGTCRIWDARLEPR--IYV----PRPLKFTE--KDLVDSI 322 (1113)
T ss_pred hHHHHhccc----cceeeeccCccc---cC--------CCCCceEecccccccc--ccC----CCCCCccc--ccceeee
Confidence 666665543 579999999943 11 7899999999862221 100 00111111 1235666
Q ss_pred EEcCCCceEEEEecCCCCccccCC------------------------CCCCceeeEEEecCCcCcccceeccccceeec
Q 003087 167 DYHPELSLLSVVSNTDTSSLTSSG------------------------NSGPCCISLWRRCHNLELEQLYTTQIEGLYCE 222 (849)
Q Consensus 167 afsPdg~lLas~g~d~t~~~~~~~------------------------~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~ 222 (849)
-|-..|.-.++++.+++...|.+. .-..+.+..|+...+ +. ...
T Consensus 323 ~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---------~l---~H~ 390 (1113)
T KOG0644|consen 323 LFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---------QL---LHN 390 (1113)
T ss_pred eccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccc---------hh---hhh
Confidence 666666666666666655544210 000122333443332 11 112
Q ss_pred cCCCccccccceEEEccCCCE-EEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecC
Q 003087 223 PKGHEVQLAHPKVLISPQGKF-VATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSD 301 (849)
Q Consensus 223 ~~g~~h~~~V~~vafSPDG~~-LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D 301 (849)
..| |.+.++-+.|.|=... --+++.||+..|||+-.+.. ++.+- .+| ..+++-.||+|
T Consensus 391 l~g--hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p-ik~y~-----------------~gh-~kl~d~kFSqd 449 (1113)
T KOG0644|consen 391 LMG--HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP-IKHYF-----------------IGH-GKLVDGKFSQD 449 (1113)
T ss_pred hcc--cccceeeeeecCCCcHhhhhccCCCceEeeecccCCc-ceeee-----------------ccc-ceeeccccCCC
Confidence 235 7889999999996555 45789999999999987754 33332 012 34677899999
Q ss_pred CE-EEEEEeCCcEEEEEec
Q 003087 302 NI-LILARKSSIITMIDVL 319 (849)
Q Consensus 302 ~~-la~a~~dgti~lwdl~ 319 (849)
|+ +++...-|.+.|....
T Consensus 450 gts~~lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 450 GTSIALSDDHGQLYILGTG 468 (1113)
T ss_pred CceEecCCCCCceEEeccC
Confidence 86 5555566777776543
No 193
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.20 E-value=2e-10 Score=124.46 Aligned_cols=241 Identities=11% Similarity=0.129 Sum_probs=149.6
Q ss_pred EEEcCCCCeEEEEe--CC--eEEEEecCCCCCcceeeeeecC--CCCE-EEEEECC-------CCCEEEEEeCCCcEEEE
Q 003087 16 LFISPRGERVAVAA--VN--QVTILQKDDDYQEPCGIFNCTG--LGAS-IYGAWSE-------SHDVLGIVDDTHTVYFF 81 (849)
Q Consensus 16 lafSPdG~~LAsas--~~--~i~iw~~~~~~~~~~~~~~~~~--~~~v-~~vafSP-------DG~~LAs~~~dgtIrlW 81 (849)
+-+=|.-.+|++|- ++ .+.+|--... ....+..|+ -+.. .|++|-- -|.++|.|..|..|.||
T Consensus 131 ~~V~psDnlIl~ar~eddvs~LEvYVyn~~---e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIW 207 (463)
T KOG0270|consen 131 EQVKPSDNLILCARNEDDVSYLEVYVYNEE---EENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIW 207 (463)
T ss_pred ceeccCCcEEEEeeccCCceEEEEEEEcCC---CcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEe
Confidence 34457677777773 22 4555532211 111222222 2222 4666631 36899999999999999
Q ss_pred ecC--Ccc--ceecccc-------c-------ccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCccc
Q 003087 82 KAN--GEE--ITRFTNK-------H-------LKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASI 143 (849)
Q Consensus 82 d~~--g~~--~~~l~~~-------~-------~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~ 143 (849)
|+. ... ..++-.. . .++..+|.+|++.-. ..+.++++|.|.||++||+.++++...
T Consensus 208 DLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~------~~nVLaSgsaD~TV~lWD~~~g~p~~s 281 (463)
T KOG0270|consen 208 DLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN------FRNVLASGSADKTVKLWDVDTGKPKSS 281 (463)
T ss_pred ccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc------cceeEEecCCCceEEEEEcCCCCccee
Confidence 985 221 1122100 0 012223444443221 112467779999999999999888654
Q ss_pred ccccccCCcceeccccCCceEEEEEcCC-CceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeec
Q 003087 144 SSASASSSGLTLRRQFPQNVICTDYHPE-LSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCE 222 (849)
Q Consensus 144 ~~~~~~~~~~~l~~~~~~~V~svafsPd-g~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~ 222 (849)
+. ||...|.+++|||. ...|++|+.|+| |.+-|.....+... .+ +
T Consensus 282 ~~------------~~~k~Vq~l~wh~~~p~~LLsGs~D~~-------------V~l~D~R~~~~s~~--------~w-k 327 (463)
T KOG0270|consen 282 IT------------HHGKKVQTLEWHPYEPSVLLSGSYDGT-------------VALKDCRDPSNSGK--------EW-K 327 (463)
T ss_pred hh------------hcCCceeEEEecCCCceEEEeccccce-------------EEeeeccCccccCc--------eE-E
Confidence 33 66778999999995 667889988975 56666543111000 11 1
Q ss_pred cCCCccccccceEEEccCCCEEEEE-eCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecC
Q 003087 223 PKGHEVQLAHPKVLISPQGKFVATS-DTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSD 301 (849)
Q Consensus 223 ~~g~~h~~~V~~vafSPDG~~LAs~-s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D 301 (849)
-.+.|-+|+|-|-....+-+ ..||+|+-+|+.+.+.++++.. .|..+|..+++++.
T Consensus 328 -----~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~------------------AHd~~ISgl~~n~~ 384 (463)
T KOG0270|consen 328 -----FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK------------------AHDDEISGLSVNIQ 384 (463)
T ss_pred -----eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEE------------------eccCCcceEEecCC
Confidence 12367889999888775544 4689999999987644343332 45577888888775
Q ss_pred --CEEEEEEeCCcEEEEEecCCc
Q 003087 302 --NILILARKSSIITMIDVLSGL 322 (849)
Q Consensus 302 --~~la~a~~dgti~lwdl~~~~ 322 (849)
|-+++++.+++|++|++....
T Consensus 385 ~p~~l~t~s~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 385 TPGLLSTASTDKVVKLWKFDVDS 407 (463)
T ss_pred CCcceeeccccceEEEEeecCCC
Confidence 357889999999999997654
No 194
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.16 E-value=1.4e-10 Score=124.39 Aligned_cols=155 Identities=16% Similarity=0.169 Sum_probs=105.7
Q ss_pred ccCCceEEEEEcCCCc-eEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEE
Q 003087 158 QFPQNVICTDYHPELS-LLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVL 236 (849)
Q Consensus 158 ~~~~~V~svafsPdg~-lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~va 236 (849)
|....|.++.|++++. .||+||.|.. |++|.++.+.+...-.. ..+.+...+ |+..|+.|.
T Consensus 11 H~~~pv~s~dfq~n~~~~laT~G~D~~-------------iriW~v~r~~~~~~~~~---V~y~s~Ls~--H~~aVN~vR 72 (434)
T KOG1009|consen 11 HDHEPVYSVDFQKNSLNKLATAGGDKD-------------IRIWKVNRSEPGGGDMK---VEYLSSLSR--HTRAVNVVR 72 (434)
T ss_pred cCCCceEEEEeccCcccceecccCccc-------------eeeeeeeecCCCCCcee---EEEeecccC--CcceeEEEE
Confidence 4445799999999988 9999999973 89999876543221000 011223344 889999999
Q ss_pred EccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCC-------CCCCCCCcEEEEEecCCE-EEEEE
Q 003087 237 ISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDG-------RTKPISDITDFAWWSDNI-LILAR 308 (849)
Q Consensus 237 fSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~-------~~~~~~~v~~vaws~D~~-la~a~ 308 (849)
|||+|.+||||+.+|.|.||....- ..+.... +. .++++ ...|...+++++|+||+. +++++
T Consensus 73 f~p~gelLASg~D~g~v~lWk~~~~----~~~~~d~-e~-----~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s 142 (434)
T KOG1009|consen 73 FSPDGELLASGGDGGEVFLWKQGDV----RIFDADT-EA-----DLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGS 142 (434)
T ss_pred EcCCcCeeeecCCCceEEEEEecCc----CCccccc-hh-----hhCccceEEEEEecccccchhhhhccCCCceeeeee
Confidence 9999999999999999999987631 1111111 00 01111 123667899999999986 77899
Q ss_pred eCCcEEEEEecCCccccccCCCCCCeEEEEEec
Q 003087 309 KSSIITMIDVLSGLKVKETDPKLRGHVFLLESK 341 (849)
Q Consensus 309 ~dgti~lwdl~~~~~l~~~~~~~~g~~~~Le~~ 341 (849)
-|+++++||+..|+.+.. ...|...+.++.+.
T Consensus 143 ~dns~~l~Dv~~G~l~~~-~~dh~~yvqgvawD 174 (434)
T KOG1009|consen 143 VDNSVRLWDVHAGQLLAI-LDDHEHYVQGVAWD 174 (434)
T ss_pred ccceEEEEEeccceeEee-ccccccccceeecc
Confidence 999999999999985432 22344444454443
No 195
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.16 E-value=2.3e-09 Score=120.61 Aligned_cols=286 Identities=11% Similarity=0.059 Sum_probs=163.5
Q ss_pred EEEcC---CCCeEEEEe-CCeEEEEecCCCCCc-ceeeee--ecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccc
Q 003087 16 LFISP---RGERVAVAA-VNQVTILQKDDDYQE-PCGIFN--CTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEI 88 (849)
Q Consensus 16 lafSP---dG~~LAsas-~~~i~iw~~~~~~~~-~~~~~~--~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~ 88 (849)
..|++ .-+.||++- ++.|.|.+.....-. .-..+. .-|.+.|..++|-|--..|++++.|.|+|+||+.+..+
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 45554 234778886 578999885432111 000011 12467889999999667788999999999999986554
Q ss_pred eecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCccc-------cc--ccccCCcceecc--
Q 003087 89 TRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASI-------SS--ASASSSGLTLRR-- 157 (849)
Q Consensus 89 ~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~-------~~--~~~~~~~~~l~~-- 157 (849)
.... -..++...|.+++|.+...+ -|.+++.||.|.+||+.-...-.. +. +....+...+..
T Consensus 135 ~G~~-~~~GH~~SvkS~cf~~~n~~------vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~ 207 (720)
T KOG0321|consen 135 VGGR-LNLGHTGSVKSECFMPTNPA------VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRI 207 (720)
T ss_pred ecce-eecccccccchhhhccCCCc------ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccc
Confidence 4331 12233467999999874322 167779999999999965431111 00 110000011110
Q ss_pred ----ccCCceEE---EEEcCCCceEEEEec-CCCCccccCCCCCCceeeEEEecCCcC---cccceeccccceeeccCCC
Q 003087 158 ----QFPQNVIC---TDYHPELSLLSVVSN-TDTSSLTSSGNSGPCCISLWRRCHNLE---LEQLYTTQIEGLYCEPKGH 226 (849)
Q Consensus 158 ----~~~~~V~s---vafsPdg~lLas~g~-d~t~~~~~~~~~G~~~I~lW~~~~~~~---~~~l~~~~~~~~~~~~~g~ 226 (849)
-+...|.+ +.|.-|..+||++|. |+ +|++||+..... .++. +..++....+
T Consensus 208 ~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~-------------~iKVWDLRk~~~~~r~ep~---~~~~~~t~sk-- 269 (720)
T KOG0321|consen 208 RKWKAASNTIFSSVTVVLFKDESTLASAGAADS-------------TIKVWDLRKNYTAYRQEPR---GSDKYPTHSK-- 269 (720)
T ss_pred cccccccCceeeeeEEEEEeccceeeeccCCCc-------------ceEEEeecccccccccCCC---cccCccCccc--
Confidence 11224555 777778889999988 54 499999976421 1111 1111110000
Q ss_pred ccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCC-EEE
Q 003087 227 EVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDN-ILI 305 (849)
Q Consensus 227 ~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~-~la 305 (849)
-..++.++..-.-|.+|...-.|++|..|++.+.. +-+.....+.++ ....+.+.. +||+ .++
T Consensus 270 -rs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s----~sP~~~~sg~~~----------~sf~vks~l-Spd~~~l~ 333 (720)
T KOG0321|consen 270 -RSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLS----ISPVAEFSGKLN----------SSFYVKSEL-SPDDCSLL 333 (720)
T ss_pred -ceeeeEEEEecCCCCeEEEEecCCcEEEEeccccC----cCchhhccCccc----------ceeeeeeec-CCCCceEe
Confidence 12355566665556887766679999999999752 211111011100 011233333 4565 588
Q ss_pred EEEeCCcEEEEEecCCccccccCCCCCCeEEEEEecc
Q 003087 306 LARKSSIITMIDVLSGLKVKETDPKLRGHVFLLESKS 342 (849)
Q Consensus 306 ~a~~dgti~lwdl~~~~~l~~~~~~~~g~~~~Le~~~ 342 (849)
+|+.|+...+|.+.+.+.-..-.-+|.-+++.+.+-+
T Consensus 334 SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p 370 (720)
T KOG0321|consen 334 SGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP 370 (720)
T ss_pred ccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc
Confidence 9999999999999987621111114566666666644
No 196
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=9.6e-10 Score=122.71 Aligned_cols=247 Identities=14% Similarity=0.142 Sum_probs=149.4
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCC--EEEEEeCCCcEEEEecC-
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHD--VLGIVDDTHTVYFFKAN- 84 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~--~LAs~~~dgtIrlWd~~- 84 (849)
+.+.|.+|+..|-|.+||+|+ ||+|+||-..++ ..+.+++. .+.|++|+|+|.+. +||+|-... +-|-+.-
T Consensus 399 Htg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg--Rcvr~~~~--d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~ 473 (733)
T KOG0650|consen 399 HTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG--RCVRTVQF--DSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIF 473 (733)
T ss_pred cCCeEEEEEecCCcceeeecCCCCcEEEEEeecc--eEEEEEee--cceeEEEEecCCCCceeEEEEecCc-eEEeCccc
Confidence 458899999999999999999 589999987642 33333332 45789999999875 466665544 4444432
Q ss_pred Ccccee---------cccccc--------------cccccEEEEEecCC--cccccccc-eeEEEEeC---CCcEEEEEe
Q 003087 85 GEEITR---------FTNKHL--------------KVSLPIIGLIAQDE--TDVQRSCL-CSFTVFTS---DGFLHQIEI 135 (849)
Q Consensus 85 g~~~~~---------l~~~~~--------------~~~~~V~~l~fs~~--~~~~~s~~-~~~~~~s~---Dg~v~lw~~ 135 (849)
|..+.. ...... .....|.-++-.+. ....|... ..|++... ...|-+.++
T Consensus 474 G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQL 553 (733)
T KOG0650|consen 474 GDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQL 553 (733)
T ss_pred cchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEec
Confidence 521111 000000 00001111111111 11222211 23444333 334666777
Q ss_pred cCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceecc
Q 003087 136 SQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQ 215 (849)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~ 215 (849)
+....+..+ +.+ ...|.++.|||--..|.++.-.. |+++++....-...+..
T Consensus 554 SK~~sQ~PF---------~ks---kG~vq~v~FHPs~p~lfVaTq~~--------------vRiYdL~kqelvKkL~t-- 605 (733)
T KOG0650|consen 554 SKRKSQSPF---------RKS---KGLVQRVKFHPSKPYLFVATQRS--------------VRIYDLSKQELVKKLLT-- 605 (733)
T ss_pred ccccccCch---------hhc---CCceeEEEecCCCceEEEEeccc--------------eEEEehhHHHHHHHHhc--
Confidence 665544332 122 23499999999988888875543 89999865311111111
Q ss_pred ccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEE
Q 003087 216 IEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITD 295 (849)
Q Consensus 216 ~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~ 295 (849)
...+|.+|+++|.|--|..++.|+.+..+|++-.....+++. -|..-+.+
T Consensus 606 ------------g~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr------------------~H~~avr~ 655 (733)
T KOG0650|consen 606 ------------GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLR------------------LHEKAVRS 655 (733)
T ss_pred ------------CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhh------------------hhhhhhhh
Confidence 134788999999999999999999999999985432223332 13345788
Q ss_pred EEEecCC-EEEEEEeCCcEEEEEe
Q 003087 296 FAWWSDN-ILILARKSSIITMIDV 318 (849)
Q Consensus 296 vaws~D~-~la~a~~dgti~lwdl 318 (849)
|+|.+-= -+++|+.||++.|+--
T Consensus 656 Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 656 VAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred hhhccccceeeeecCCCcEEEEee
Confidence 8887643 3678999999998764
No 197
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.15 E-value=1.4e-10 Score=125.98 Aligned_cols=231 Identities=10% Similarity=0.168 Sum_probs=162.1
Q ss_pred ccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccc
Q 003087 10 TKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEI 88 (849)
Q Consensus 10 ~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~ 88 (849)
.-..+.+.++.||+.|+.|+ -|.+--+|+... .+. |...-...|..+.|-.+-+++|+|-. ..++|+|-+|.++
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~--~L~--~Ei~v~Etv~Dv~~LHneq~~AVAQK-~y~yvYD~~GtEl 203 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTK--KLH--FEINVMETVRDVTFLHNEQFFAVAQK-KYVYVYDNNGTEL 203 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccc--eee--eeeehhhhhhhhhhhcchHHHHhhhh-ceEEEecCCCcEE
Confidence 34568899999999998887 478888877642 221 22222567899999999999999876 5689999999987
Q ss_pred eecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEE
Q 003087 89 TRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDY 168 (849)
Q Consensus 89 ~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svaf 168 (849)
.-+..+ ..|..+-|-|-... ++.++..|.++--|+++|+....+. .+ ...+..+.-
T Consensus 204 HClk~~-----~~v~rLeFLPyHfL-------L~~~~~~G~L~Y~DVS~GklVa~~~-----------t~-~G~~~vm~q 259 (545)
T KOG1272|consen 204 HCLKRH-----IRVARLEFLPYHFL-------LVAASEAGFLKYQDVSTGKLVASIR-----------TG-AGRTDVMKQ 259 (545)
T ss_pred eehhhc-----Cchhhhcccchhhe-------eeecccCCceEEEeechhhhhHHHH-----------cc-CCccchhhc
Confidence 666443 35777888774333 3344889999999999998754332 01 123666677
Q ss_pred cCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEe
Q 003087 169 HPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSD 248 (849)
Q Consensus 169 sPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s 248 (849)
.|-.-.+=+|...+ +|++|..+....+..+.+ |.++|.+|++-|+|+++||+|
T Consensus 260 NP~NaVih~GhsnG-------------tVSlWSP~skePLvKiLc--------------H~g~V~siAv~~~G~YMaTtG 312 (545)
T KOG1272|consen 260 NPYNAVIHLGHSNG-------------TVSLWSPNSKEPLVKILC--------------HRGPVSSIAVDRGGRYMATTG 312 (545)
T ss_pred CCccceEEEcCCCc-------------eEEecCCCCcchHHHHHh--------------cCCCcceEEECCCCcEEeecc
Confidence 77666665555554 489999887643333322 777999999999999999999
Q ss_pred CCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEE
Q 003087 249 TNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMID 317 (849)
Q Consensus 249 ~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwd 317 (849)
.|..++|||+.+... +.+.. .+.+...+++|+-|-|| ++....|.||.
T Consensus 313 ~Dr~~kIWDlR~~~q-l~t~~-------------------tp~~a~~ls~SqkglLA-~~~G~~v~iw~ 360 (545)
T KOG1272|consen 313 LDRKVKIWDLRNFYQ-LHTYR-------------------TPHPASNLSLSQKGLLA-LSYGDHVQIWK 360 (545)
T ss_pred cccceeEeeeccccc-cceee-------------------cCCCcccccccccccee-eecCCeeeeeh
Confidence 999999999986532 22211 01234557787777554 44456788885
No 198
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=3.2e-09 Score=122.32 Aligned_cols=198 Identities=14% Similarity=0.194 Sum_probs=115.8
Q ss_pred cceEEEEEcCCCCeEEEEeC--C--eEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEE-EeCCC--cEEEEec
Q 003087 11 KKQVSLFISPRGERVAVAAV--N--QVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGI-VDDTH--TVYFFKA 83 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~--~--~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs-~~~dg--tIrlWd~ 83 (849)
+.+.+.+|||||+.||..+. + .|.+|+..++... .+. ...+.....+|||||+.||. .+.+| .|++||+
T Consensus 199 ~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~---~l~-~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~ 274 (430)
T PRK00178 199 EPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE---QIT-NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDL 274 (430)
T ss_pred CceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE---Ecc-CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEEC
Confidence 56789999999999998863 2 5777776543211 111 11223456899999999984 44455 5888899
Q ss_pred CCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCc--EEEEEecCCCCcccccccccCCcceeccccCC
Q 003087 84 NGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGF--LHQIEISQDPSASISSASASSSGLTLRRQFPQ 161 (849)
Q Consensus 84 ~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~--v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (849)
.++....+..+. .......|+|++... +++...+|. |.++++.++..... ++.+.
T Consensus 275 ~~~~~~~lt~~~----~~~~~~~~spDg~~i------~f~s~~~g~~~iy~~d~~~g~~~~l----------t~~~~--- 331 (430)
T PRK00178 275 ASRQLSRVTNHP----AIDTEPFWGKDGRTL------YFTSDRGGKPQIYKVNVNGGRAERV----------TFVGN--- 331 (430)
T ss_pred CCCCeEEcccCC----CCcCCeEECCCCCEE------EEEECCCCCceEEEEECCCCCEEEe----------ecCCC---
Confidence 877666665432 123446677765321 122223444 55555554443211 11211
Q ss_pred ceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCC
Q 003087 162 NVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQG 241 (849)
Q Consensus 162 ~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG 241 (849)
.....+|||||+.|+..+..+ |...|.+|++.++. ...+.. .......+|||||
T Consensus 332 ~~~~~~~Spdg~~i~~~~~~~----------~~~~l~~~dl~tg~-~~~lt~---------------~~~~~~p~~spdg 385 (430)
T PRK00178 332 YNARPRLSADGKTLVMVHRQD----------GNFHVAAQDLQRGS-VRILTD---------------TSLDESPSVAPNG 385 (430)
T ss_pred CccceEECCCCCEEEEEEccC----------CceEEEEEECCCCC-EEEccC---------------CCCCCCceECCCC
Confidence 234578999999998776543 22236677776542 111111 1112256899999
Q ss_pred CEEEEEeCC-C--cEEEEecCCC
Q 003087 242 KFVATSDTN-G--CLYIFEMDKD 261 (849)
Q Consensus 242 ~~LAs~s~D-g--tv~LWd~~~~ 261 (849)
+.|+.++.+ | .|.++++++.
T Consensus 386 ~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 386 TMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred CEEEEEEecCCceEEEEEECCCC
Confidence 999887654 3 4566666554
No 199
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.13 E-value=1.8e-10 Score=127.13 Aligned_cols=122 Identities=16% Similarity=0.171 Sum_probs=89.7
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecC-CCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Ccc
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTG-LGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEE 87 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~-~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~ 87 (849)
+.|+..+|||||++||+.| |+..+|++.+. +.+.+... . -+...+|+|||||++||+|+.|.-|.||... ++.
T Consensus 291 g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt--~eLlg~mk--SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRV 366 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLATVSQDGFLRIFDFDT--QELLGVMK--SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRV 366 (636)
T ss_pred ccccceeEcCCCceEEEEecCceEEEeeccH--HHHHHHHH--hhccceEEEEEcCCccEEEecCCcceEEEEEeccceE
Confidence 6789999999999999998 78999998653 23333222 1 4578999999999999999999999999987 444
Q ss_pred ceecccccccccccEEEEEecC-Cc-cc-------------------------cccc--------------ceeEEEEeC
Q 003087 88 ITRFTNKHLKVSLPIIGLIAQD-ET-DV-------------------------QRSC--------------LCSFTVFTS 126 (849)
Q Consensus 88 ~~~l~~~~~~~~~~V~~l~fs~-~~-~~-------------------------~~s~--------------~~~~~~~s~ 126 (849)
+.+=.+ +.++|..|+|.| .. .- .+++ .++|-+.+.
T Consensus 367 VARGqG----HkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGq 442 (636)
T KOG2394|consen 367 VARGQG----HKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQ 442 (636)
T ss_pred EEeccc----cccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccc
Confidence 443322 247899999974 00 00 1111 246778889
Q ss_pred CCcEEEEEecCCCC
Q 003087 127 DGFLHQIEISQDPS 140 (849)
Q Consensus 127 Dg~v~lw~~~~~~~ 140 (849)
|-++.+||++.+-+
T Consensus 443 DTqlcLWDlteD~L 456 (636)
T KOG2394|consen 443 DTQLCLWDLTEDVL 456 (636)
T ss_pred cceEEEEecchhhc
Confidence 99999999986543
No 200
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.13 E-value=5.2e-09 Score=120.27 Aligned_cols=204 Identities=13% Similarity=0.091 Sum_probs=112.8
Q ss_pred cceEEEEEcCCCCeEEE--Ee--CC--eEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeC-CC----cEE
Q 003087 11 KKQVSLFISPRGERVAV--AA--VN--QVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDD-TH----TVY 79 (849)
Q Consensus 11 ~~v~slafSPdG~~LAs--as--~~--~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~-dg----tIr 79 (849)
..+.+-+|||||+.+|. .+ ++ .|-+.+..++....+..+ .+.....+|||||+.||..++ +| .+.
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~----~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~ 260 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL----QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQ 260 (428)
T ss_pred CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC----CCCccceEECCCCCEEEEEECCCCCcceeEE
Confidence 34566799999987443 44 23 455556554322222111 233456899999999997653 23 344
Q ss_pred EEecCC---ccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceec
Q 003087 80 FFKANG---EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLR 156 (849)
Q Consensus 80 lWd~~g---~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~ 156 (849)
+|++.+ .....+..... .......|+||+... +++...+|..++|.+..+..... ...+.
T Consensus 261 ~~~~~~g~~g~~~~lt~~~~---~~~~~p~wSPDG~~L------af~s~~~g~~~ly~~~~~~~g~~--------~~~lt 323 (428)
T PRK01029 261 SFSLETGAIGKPRRLLNEAF---GTQGNPSFSPDGTRL------VFVSNKDGRPRIYIMQIDPEGQS--------PRLLT 323 (428)
T ss_pred EeecccCCCCcceEeecCCC---CCcCCeEECCCCCEE------EEEECCCCCceEEEEECcccccc--------eEEec
Confidence 477642 22233432211 122456788876422 12223567667776542111000 00111
Q ss_pred cccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEE
Q 003087 157 RQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVL 236 (849)
Q Consensus 157 ~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~va 236 (849)
.....+...+|||||+.||..+.++ |...|.+|++.++. ...+.. ....+...+
T Consensus 324 -~~~~~~~~p~wSPDG~~Laf~~~~~----------g~~~I~v~dl~~g~-~~~Lt~--------------~~~~~~~p~ 377 (428)
T PRK01029 324 -KKYRNSSCPAWSPDGKKIAFCSVIK----------GVRQICVYDLATGR-DYQLTT--------------SPENKESPS 377 (428)
T ss_pred -cCCCCccceeECCCCCEEEEEEcCC----------CCcEEEEEECCCCC-eEEccC--------------CCCCccceE
Confidence 1123467889999999998776543 22247888887652 111211 112456799
Q ss_pred EccCCCEEEEEeC---CCcEEEEecCCC
Q 003087 237 ISPQGKFVATSDT---NGCLYIFEMDKD 261 (849)
Q Consensus 237 fSPDG~~LAs~s~---Dgtv~LWd~~~~ 261 (849)
|||||+.|+..+. .+.|.+|++.++
T Consensus 378 wSpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 378 WAIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 9999999885543 356778888776
No 201
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=4.3e-09 Score=106.37 Aligned_cols=247 Identities=13% Similarity=0.135 Sum_probs=155.5
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCC---CCCcceeee---e-ecCCCCEEEEEECCCCCEEEEEeCCCcEEEEe
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDD---DYQEPCGIF---N-CTGLGASIYGAWSESHDVLGIVDDTHTVYFFK 82 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~---~~~~~~~~~---~-~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd 82 (849)
+.|.+-|+||-+++|++|+ +++|-+..+.. +...+-++. . ..+.+.+..++|. ..+|.||++ |.|+=|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEee
Confidence 5577889999999999996 68888876531 111222221 1 1236788999998 456767765 9999887
Q ss_pred cCCc-------cceecc-cccccc--cccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCc
Q 003087 83 ANGE-------EITRFT-NKHLKV--SLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSG 152 (849)
Q Consensus 83 ~~g~-------~~~~l~-~~~~~~--~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~ 152 (849)
.+-. .+.++. +-+.+. ..-|+++-..| .+++++.++.||.+.-||+.+|+.+..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP-------~enSi~~AgGD~~~y~~dlE~G~i~r~--------- 151 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP-------SENSILFAGGDGVIYQVDLEDGRIQRE--------- 151 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEecc-------CCCcEEEecCCeEEEEEEecCCEEEEE---------
Confidence 6421 111111 111110 02244444433 233577778999999999999987654
Q ss_pred ceeccccCCceEEEEE-cCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccc
Q 003087 153 LTLRRQFPQNVICTDY-HPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLA 231 (849)
Q Consensus 153 ~~l~~~~~~~V~svaf-sPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~ 231 (849)
++ +|+.-|-+|+- +..|+.| +|+.|+| +|+||..+....+.|-.-.-...++.+.| .+
T Consensus 152 --~r-GHtDYvH~vv~R~~~~qil-sG~EDGt-------------vRvWd~kt~k~v~~ie~yk~~~~lRp~~g----~w 210 (325)
T KOG0649|consen 152 --YR-GHTDYVHSVVGRNANGQIL-SGAEDGT-------------VRVWDTKTQKHVSMIEPYKNPNLLRPDWG----KW 210 (325)
T ss_pred --Ec-CCcceeeeeeecccCccee-ecCCCcc-------------EEEEeccccceeEEeccccChhhcCcccC----ce
Confidence 44 44667999988 7777765 8989975 89999877543333211111112221112 35
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCC
Q 003087 232 HPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSS 311 (849)
Q Consensus 232 V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dg 311 (849)
|.+++- +..+|++|+ ...+.||.+...++ ...|+ .+++|..|.|-.|. +++++..+
T Consensus 211 igala~--~edWlvCGg-Gp~lslwhLrsse~-t~vfp-------------------ipa~v~~v~F~~d~-vl~~G~g~ 266 (325)
T KOG0649|consen 211 IGALAV--NEDWLVCGG-GPKLSLWHLRSSES-TCVFP-------------------IPARVHLVDFVDDC-VLIGGEGN 266 (325)
T ss_pred eEEEec--cCceEEecC-CCceeEEeccCCCc-eEEEe-------------------cccceeEeeeecce-EEEecccc
Confidence 666665 777898764 56799999997654 33443 23568889995554 55677777
Q ss_pred cEEEEEecCC
Q 003087 312 IITMIDVLSG 321 (849)
Q Consensus 312 ti~lwdl~~~ 321 (849)
-|.-|.+.+-
T Consensus 267 ~v~~~~l~Gv 276 (325)
T KOG0649|consen 267 HVQSYTLNGV 276 (325)
T ss_pred ceeeeeeccE
Confidence 8888887653
No 202
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.11 E-value=5.4e-09 Score=108.15 Aligned_cols=252 Identities=15% Similarity=0.179 Sum_probs=157.8
Q ss_pred ceEEEEEc--CC-CCeEEEEe-----CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCC-----CEEEEEeCCCcE
Q 003087 12 KQVSLFIS--PR-GERVAVAA-----VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESH-----DVLGIVDDTHTV 78 (849)
Q Consensus 12 ~v~slafS--Pd-G~~LAsas-----~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG-----~~LAs~~~dgtI 78 (849)
.+++++|| || +.+||.|| .+.|.|...+++.+.....-+..+.-.++.+-|.||. ++||+.++ .+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSD--FL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccC--eE
Confidence 35678888 44 45899997 2678888766544333222222233467899999998 57887765 69
Q ss_pred EEEecCCcc-----ceeccc-ccccccccEEEEEecC-CcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCC
Q 003087 79 YFFKANGEE-----ITRFTN-KHLKVSLPIIGLIAQD-ETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSS 151 (849)
Q Consensus 79 rlWd~~g~~-----~~~l~~-~~~~~~~~V~~l~fs~-~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~ 151 (849)
|||.+..++ ...+.. ...++..++.+..+.. +.. .+-+.|-|-|-.+||+.++....+ .
T Consensus 124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-------~igtSSiDTTCTiWdie~~~~~~v-k------ 189 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-------LIGTSSIDTTCTIWDIETGVSGTV-K------ 189 (364)
T ss_pred EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-------eeEeecccCeEEEEEEeeccccce-e------
Confidence 999986321 011111 1122334565555543 221 244458899999999998632111 0
Q ss_pred cceeccccCCceEEEEEcCCCc-eEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCcccc
Q 003087 152 GLTLRRQFPQNVICTDYHPELS-LLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQL 230 (849)
Q Consensus 152 ~~~l~~~~~~~V~svafsPdg~-lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~ 230 (849)
..|- .|...|..|+|+.+|. ++|++|.|| + ||++|+..-....-|... +. ...
T Consensus 190 -TQLI-AHDKEV~DIaf~~~s~~~FASvgaDG-----------S--vRmFDLR~leHSTIIYE~--------p~---~~~ 243 (364)
T KOG0290|consen 190 -TQLI-AHDKEVYDIAFLKGSRDVFASVGADG-----------S--VRMFDLRSLEHSTIIYED--------PS---PST 243 (364)
T ss_pred -eEEE-ecCcceeEEEeccCccceEEEecCCC-----------c--EEEEEecccccceEEecC--------CC---CCC
Confidence 0122 3456799999999776 678999886 3 899998763211112211 11 123
Q ss_pred ccceEEEcc-CCCEEEEEeCC-CcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCC--EEEE
Q 003087 231 AHPKVLISP-QGKFVATSDTN-GCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDN--ILIL 306 (849)
Q Consensus 231 ~V~~vafSP-DG~~LAs~s~D-gtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~--~la~ 306 (849)
+.-.++|++ |=+++||-..| ..|.|-|+......+..+ .+|.+.|..|+|-|.. .|.+
T Consensus 244 pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L------------------~~H~a~VNgIaWaPhS~~hict 305 (364)
T KOG0290|consen 244 PLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL------------------RNHQASVNGIAWAPHSSSHICT 305 (364)
T ss_pred cceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehh------------------hcCcccccceEecCCCCceeee
Confidence 455777776 45778887655 578888887553222222 1466889999999975 4889
Q ss_pred EEeCCcEEEEEecCCcc
Q 003087 307 ARKSSIITMIDVLSGLK 323 (849)
Q Consensus 307 a~~dgti~lwdl~~~~~ 323 (849)
++.|-.+.|||+..+-.
T Consensus 306 aGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 306 AGDDCQALIWDLQQMPR 322 (364)
T ss_pred cCCcceEEEEecccccc
Confidence 99999999999988754
No 203
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.11 E-value=6.9e-10 Score=123.52 Aligned_cols=259 Identities=13% Similarity=0.104 Sum_probs=159.9
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCC------CCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEec
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDD------YQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKA 83 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~------~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~ 83 (849)
+.|.+++|-|----|++|+ ++++++|++.+. ...|+-+|.. |.+.|.+|+.+++|+.+-+|+.||+||.|++
T Consensus 295 d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfra-H~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~ 373 (577)
T KOG0642|consen 295 DCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRA-HEGPVLCVVVPSNGEHCYSGGIDGTIRCWNL 373 (577)
T ss_pred hhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEec-ccCceEEEEecCCceEEEeeccCceeeeecc
Confidence 6678888888888899998 789999997221 1223333332 4789999999999999999999999999965
Q ss_pred C-------CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceec
Q 003087 84 N-------GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLR 156 (849)
Q Consensus 84 ~-------g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~ 156 (849)
. +.....+..+..++...||.++++.... .+++++.|||+|+|+...... .++. ... .
T Consensus 374 p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~-------~Llscs~DgTvr~w~~~~~~~-~~f~-----~~~--e 438 (577)
T KOG0642|consen 374 PPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD-------RLLSCSSDGTVRLWEPTEESP-CTFG-----EPK--E 438 (577)
T ss_pred CCCCCcccccCcchhccceeccccceeeeeeccccc-------ceeeecCCceEEeeccCCcCc-cccC-----Ccc--c
Confidence 3 1222233333344457899999976332 356679999999999864332 2222 000 0
Q ss_pred cccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEE
Q 003087 157 RQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVL 236 (849)
Q Consensus 157 ~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~va 236 (849)
.+++ .+|+|-.---..++++.. . |. -.+.++.....+ .++.... ..+..--..+..|.
T Consensus 439 ~g~P---lsvd~~ss~~a~~~~s~~--~--------~~--~~~~~~ev~s~~-~~~~s~~------~~~~~~~~~in~vV 496 (577)
T KOG0642|consen 439 HGYP---LSVDRTSSRPAHSLASFR--F--------GY--TSIDDMEVVSDL-LIFESSA------SPGPRRYPQINKVV 496 (577)
T ss_pred cCCc---ceEeeccchhHhhhhhcc--c--------cc--ccchhhhhhhhe-eeccccC------CCcccccCccceEE
Confidence 1222 334442211011111111 0 10 011111111000 0111000 00100124577889
Q ss_pred EccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCC-EEEEEEeCCcEEE
Q 003087 237 ISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDN-ILILARKSSIITM 315 (849)
Q Consensus 237 fSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~-~la~a~~dgti~l 315 (849)
..|.+-+..+++.|+.|+++|..++.. +... ..|...+.++++-|.| .+++++.||.+++
T Consensus 497 s~~~~~~~~~~hed~~Ir~~dn~~~~~-l~s~------------------~a~~~svtslai~~ng~~l~s~s~d~sv~l 557 (577)
T KOG0642|consen 497 SHPTADITFTAHEDRSIRFFDNKTGKI-LHSM------------------VAHKDSVTSLAIDPNGPYLMSGSHDGSVRL 557 (577)
T ss_pred ecCCCCeeEecccCCceeccccccccc-chhe------------------eeccceecceeecCCCceEEeecCCceeeh
Confidence 999999999999999999999988743 2111 1355678889998877 4789999999999
Q ss_pred EEecCCccccc
Q 003087 316 IDVLSGLKVKE 326 (849)
Q Consensus 316 wdl~~~~~l~~ 326 (849)
|.+...+.+++
T Consensus 558 ~kld~k~~~~e 568 (577)
T KOG0642|consen 558 WKLDVKTCVLE 568 (577)
T ss_pred hhccchheeec
Confidence 99988776665
No 204
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=5.1e-09 Score=121.14 Aligned_cols=198 Identities=14% Similarity=0.133 Sum_probs=111.5
Q ss_pred cceEEEEEcCCCCeEEEEeC--C--eEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEE-EeCCCc--EEEEec
Q 003087 11 KKQVSLFISPRGERVAVAAV--N--QVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGI-VDDTHT--VYFFKA 83 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~--~--~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs-~~~dgt--IrlWd~ 83 (849)
..+.+.+|||||+.||..+. + .|.+|+..++ ... ..+. ..+.....+|||||+.||. .+.+|. |+++|+
T Consensus 218 ~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg--~~~-~lt~-~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl 293 (448)
T PRK04792 218 EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQ--VRE-KVTS-FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDI 293 (448)
T ss_pred CcccCceECCCCCEEEEEEecCCCcEEEEEECCCC--CeE-EecC-CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEEC
Confidence 35678999999999998762 3 4666676543 211 1111 1222347899999999985 455665 777788
Q ss_pred CCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEE--EecCCCCcccccccccCCcceeccccCC
Q 003087 84 NGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQI--EISQDPSASISSASASSSGLTLRRQFPQ 161 (849)
Q Consensus 84 ~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw--~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (849)
.++....+..+. ..+....|+||+... +++...+|..++| ++.++..... ++.+.
T Consensus 294 ~tg~~~~lt~~~----~~~~~p~wSpDG~~I------~f~s~~~g~~~Iy~~dl~~g~~~~L----------t~~g~--- 350 (448)
T PRK04792 294 ATKALTRITRHR----AIDTEPSWHPDGKSL------IFTSERGGKPQIYRVNLASGKVSRL----------TFEGE--- 350 (448)
T ss_pred CCCCeEECccCC----CCccceEECCCCCEE------EEEECCCCCceEEEEECCCCCEEEE----------ecCCC---
Confidence 776666665432 223456788765421 2222344555555 4444332111 12222
Q ss_pred ceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCC
Q 003087 162 NVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQG 241 (849)
Q Consensus 162 ~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG 241 (849)
...+.+|||||+.|+..+..+ |...|.++++.++. ...+.. + ......+|||||
T Consensus 351 ~~~~~~~SpDG~~l~~~~~~~----------g~~~I~~~dl~~g~-~~~lt~-----------~----~~d~~ps~spdG 404 (448)
T PRK04792 351 QNLGGSITPDGRSMIMVNRTN----------GKFNIARQDLETGA-MQVLTS-----------T----RLDESPSVAPNG 404 (448)
T ss_pred CCcCeeECCCCCEEEEEEecC----------CceEEEEEECCCCC-eEEccC-----------C----CCCCCceECCCC
Confidence 234579999999998876543 22123334444431 111110 0 112245899999
Q ss_pred CEEEEEeCC-Cc--EEEEecCCC
Q 003087 242 KFVATSDTN-GC--LYIFEMDKD 261 (849)
Q Consensus 242 ~~LAs~s~D-gt--v~LWd~~~~ 261 (849)
+.|+..+.+ |. +.+++.++.
T Consensus 405 ~~I~~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 405 TMVIYSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred CEEEEEEecCCceEEEEEECCCC
Confidence 998876654 33 566676544
No 205
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.10 E-value=1.2e-08 Score=116.85 Aligned_cols=160 Identities=13% Similarity=0.106 Sum_probs=99.8
Q ss_pred CCCEEEEEECCCCCEEEEEeCC---CcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCC--
Q 003087 54 LGASIYGAWSESHDVLGIVDDT---HTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDG-- 128 (849)
Q Consensus 54 ~~~v~~vafSPDG~~LAs~~~d---gtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg-- 128 (849)
...+.+.+|||||+.||.+..+ .+|++||+.+.....+.... ..+.+++|+|++... +++.+.+|
T Consensus 189 ~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~----~~~~~~~~spDg~~l------~~~~~~~~~~ 258 (417)
T TIGR02800 189 REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFP----GMNGAPAFSPDGSKL------AVSLSKDGNP 258 (417)
T ss_pred CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCC----CCccceEECCCCCEE------EEEECCCCCc
Confidence 3457889999999999987654 47999999754434433221 234567888865321 12234444
Q ss_pred cEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCc
Q 003087 129 FLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLEL 208 (849)
Q Consensus 129 ~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~ 208 (849)
.|.+|++.++..... . .+.......+|+|||+.|+.++..+ |...|.+|++.++. .
T Consensus 259 ~i~~~d~~~~~~~~l------------~-~~~~~~~~~~~s~dg~~l~~~s~~~----------g~~~iy~~d~~~~~-~ 314 (417)
T TIGR02800 259 DIYVMDLDGKQLTRL------------T-NGPGIDTEPSWSPDGKSIAFTSDRG----------GSPQIYMMDADGGE-V 314 (417)
T ss_pred cEEEEECCCCCEEEC------------C-CCCCCCCCEEECCCCCEEEEEECCC----------CCceEEEEECCCCC-E
Confidence 477777765543221 1 1122345678999999988776543 22235566655431 1
Q ss_pred ccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCC---cEEEEecCCC
Q 003087 209 EQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNG---CLYIFEMDKD 261 (849)
Q Consensus 209 ~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dg---tv~LWd~~~~ 261 (849)
..+. . +...+..++|||||++|+.++.++ .|.+||+.++
T Consensus 315 ~~l~---------~-----~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 315 RRLT---------F-----RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG 356 (417)
T ss_pred EEee---------c-----CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC
Confidence 1111 0 223566889999999999998876 7888888764
No 206
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.10 E-value=4e-09 Score=111.31 Aligned_cols=201 Identities=14% Similarity=0.208 Sum_probs=137.1
Q ss_pred CEEEEEeCCCcEEEEecC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCccccc
Q 003087 67 DVLGIVDDTHTVYFFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISS 145 (849)
Q Consensus 67 ~~LAs~~~dgtIrlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~ 145 (849)
+.+|++-++|+||++|.. |+.+..+..+. ..+.++.|.... ....+.+++.||+||+||+........+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~----~~~N~vrf~~~d-----s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~ 111 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPP----ATTNGVRFISCD-----SPHGVISCSSDGTVRLWDIRSQAESARIS 111 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCC----CcccceEEecCC-----CCCeeEEeccCCeEEEEEeecchhhhhee
Confidence 678999999999999986 66655554433 457788885421 11237788999999999998754432221
Q ss_pred ccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCC
Q 003087 146 ASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKG 225 (849)
Q Consensus 146 ~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g 225 (849)
..++.+..-.|++-.-.+++++.|. ..+ +. .-.|.+||+..... ++ +.+. ..
T Consensus 112 ---------~~~~~~~~f~~ld~nck~~ii~~Gt-E~~-~s-------~A~v~lwDvR~~qq--~l------~~~~--eS 163 (376)
T KOG1188|consen 112 ---------WTQQSGTPFICLDLNCKKNIIACGT-ELT-RS-------DASVVLWDVRSEQQ--LL------RQLN--ES 163 (376)
T ss_pred ---------ccCCCCCcceEeeccCcCCeEEecc-ccc-cC-------ceEEEEEEeccccc--hh------hhhh--hh
Confidence 2223234578888887888887653 321 10 12378999977531 11 1111 11
Q ss_pred CccccccceEEEcc-CCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCC--
Q 003087 226 HEVQLAHPKVLISP-QGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDN-- 302 (849)
Q Consensus 226 ~~h~~~V~~vafSP-DG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~-- 302 (849)
|.+-|..|.|.| |-++|+|||.||-|.|+|+..... +...-+.++ +...|..+.|..++
T Consensus 164 --H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E-----------eDaL~~viN-----~~sSI~~igw~~~~yk 225 (376)
T KOG1188|consen 164 --HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE-----------EDALLHVIN-----HGSSIHLIGWLSKKYK 225 (376)
T ss_pred --ccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc-----------hhhHHHhhc-----ccceeeeeeeecCCcc
Confidence 889999999999 558899999999999999986521 111111122 33568899999998
Q ss_pred EEEEEEeCCcEEEEEecCCc
Q 003087 303 ILILARKSSIITMIDVLSGL 322 (849)
Q Consensus 303 ~la~a~~dgti~lwdl~~~~ 322 (849)
+|..-+..++..+|++..+.
T Consensus 226 rI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 226 RIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred eEEEEEccCceeEEEccCCC
Confidence 78888999999999998876
No 207
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.09 E-value=1.2e-09 Score=121.61 Aligned_cols=208 Identities=13% Similarity=0.139 Sum_probs=132.4
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecC------CCCC--cceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEE
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKD------DDYQ--EPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVY 79 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~------~~~~--~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIr 79 (849)
+.+.|.+|+.+++|+.+-+|+ |++|+.|+.. |.+. ...+.+. ++.+.|+.+++|+....|++++.|||||
T Consensus 343 H~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~-Ghtdavw~l~~s~~~~~Llscs~DgTvr 421 (577)
T KOG0642|consen 343 HEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLL-GHTDAVWLLALSSTKDRLLSCSSDGTVR 421 (577)
T ss_pred ccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhcccee-ccccceeeeeecccccceeeecCCceEE
Confidence 558999999999999999998 8999999532 2221 1223333 2377899999999999999999999999
Q ss_pred EEecCCccceecccccccccccEEEEEecC--CcccccccceeEEEEeCCCcEEEEEec---CCCCcccccccccCCcce
Q 003087 80 FFKANGEEITRFTNKHLKVSLPIIGLIAQD--ETDVQRSCLCSFTVFTSDGFLHQIEIS---QDPSASISSASASSSGLT 154 (849)
Q Consensus 80 lWd~~g~~~~~l~~~~~~~~~~V~~l~fs~--~~~~~~s~~~~~~~~s~Dg~v~lw~~~---~~~~~~~~~~~~~~~~~~ 154 (849)
+|+..+....++.... +...+ .+|.|-. ...... ++.++.+.+. ++....+++ +..
T Consensus 422 ~w~~~~~~~~~f~~~~-e~g~P-lsvd~~ss~~a~~~~-----------s~~~~~~~~~~~ev~s~~~~~~----s~~-- 482 (577)
T KOG0642|consen 422 LWEPTEESPCTFGEPK-EHGYP-LSVDRTSSRPAHSLA-----------SFRFGYTSIDDMEVVSDLLIFE----SSA-- 482 (577)
T ss_pred eeccCCcCccccCCcc-ccCCc-ceEeeccchhHhhhh-----------hcccccccchhhhhhhheeecc----ccC--
Confidence 9998866542222211 11111 2444422 111212 2222222222 211111111 100
Q ss_pred eccc-cCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccc
Q 003087 155 LRRQ-FPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHP 233 (849)
Q Consensus 155 l~~~-~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~ 233 (849)
..+. -...|+-|..+|.+-+..++..+. +|++.+...+. .+.+. .. |-..|.
T Consensus 483 ~~~~~~~~~in~vVs~~~~~~~~~~hed~-------------~Ir~~dn~~~~---~l~s~---------~a--~~~svt 535 (577)
T KOG0642|consen 483 SPGPRRYPQINKVVSHPTADITFTAHEDR-------------SIRFFDNKTGK---ILHSM---------VA--HKDSVT 535 (577)
T ss_pred CCcccccCccceEEecCCCCeeEecccCC-------------ceecccccccc---cchhe---------ee--ccceec
Confidence 1111 012489999999999988887775 37887765531 22111 01 677999
Q ss_pred eEEEccCCCEEEEEeCCCcEEEEecCCCcc
Q 003087 234 KVLISPQGKFVATSDTNGCLYIFEMDKDNF 263 (849)
Q Consensus 234 ~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~ 263 (849)
+++|-|+|-+|++++.||.+++|.+....+
T Consensus 536 slai~~ng~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 536 SLAIDPNGPYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred ceeecCCCceEEeecCCceeehhhccchhe
Confidence 999999999999999999999999986544
No 208
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=1.4e-08 Score=107.79 Aligned_cols=217 Identities=16% Similarity=0.127 Sum_probs=129.5
Q ss_pred cceEEEEEcCCCC-eEEEEeCCeEEEEecCCC--CCcce--------eeeeecCCCCEEEEEECCCCCEEEEEeC-CCcE
Q 003087 11 KKQVSLFISPRGE-RVAVAAVNQVTILQKDDD--YQEPC--------GIFNCTGLGASIYGAWSESHDVLGIVDD-THTV 78 (849)
Q Consensus 11 ~~v~slafSPdG~-~LAsas~~~i~iw~~~~~--~~~~~--------~~~~~~~~~~v~~vafSPDG~~LAs~~~-dgtI 78 (849)
+.|.+++|-|.+. -||+|..+.|-||..+.. ...++ ..++..|+..|++++|.+||..|++++- |..|
T Consensus 141 rnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi 220 (445)
T KOG2139|consen 141 RNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSI 220 (445)
T ss_pred cceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceE
Confidence 6799999999985 678888888999975421 11110 0112234778999999999999999884 6789
Q ss_pred EEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccc
Q 003087 79 YFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQ 158 (849)
Q Consensus 79 rlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (849)
.|||++.+....+.+... ..+.-+.||||++. |+.++-|+++++|+....- +-+ .+.+..
T Consensus 221 ~iWdpdtg~~~pL~~~gl---gg~slLkwSPdgd~-------lfaAt~davfrlw~e~q~w---t~e------rw~lgs- 280 (445)
T KOG2139|consen 221 MIWDPDTGQKIPLIPKGL---GGFSLLKWSPDGDV-------LFAATCDAVFRLWQENQSW---TKE------RWILGS- 280 (445)
T ss_pred EEEcCCCCCcccccccCC---CceeeEEEcCCCCE-------EEEecccceeeeehhcccc---eec------ceeccC-
Confidence 999998444344432211 23566888997764 4555899999999654211 111 122222
Q ss_pred cCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCce-----eeEEEecCCcCcccce--eccccceeeccCCCccccc
Q 003087 159 FPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCC-----ISLWRRCHNLELEQLY--TTQIEGLYCEPKGHEVQLA 231 (849)
Q Consensus 159 ~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~-----I~lW~~~~~~~~~~l~--~~~~~~~~~~~~g~~h~~~ 231 (849)
..|.+..|+|+|+.|.-+....+ .+.+..-.|.+. -.+|++.-..+++.+. +++ .. --++
T Consensus 281 --grvqtacWspcGsfLLf~~sgsp-~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~------~l----~cge 347 (445)
T KOG2139|consen 281 --GRVQTACWSPCGSFLLFACSGSP-RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQ------RL----CCGE 347 (445)
T ss_pred --CceeeeeecCCCCEEEEEEcCCc-eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCc------cc----ccCc
Confidence 25999999999997755433321 222111111110 1223333222222211 111 01 1136
Q ss_pred cceEEEccCCCEEEEEeCCCc--------EEEEecCC
Q 003087 232 HPKVLISPQGKFVATSDTNGC--------LYIFEMDK 260 (849)
Q Consensus 232 V~~vafSPDG~~LAs~s~Dgt--------v~LWd~~~ 260 (849)
+.+++|-|-|.+||+.--.+. |.+||...
T Consensus 348 aq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 348 AQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRK 384 (445)
T ss_pred cceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccc
Confidence 779999999999998744333 55566553
No 209
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.08 E-value=2.7e-08 Score=104.38 Aligned_cols=191 Identities=13% Similarity=0.181 Sum_probs=117.1
Q ss_pred CCeEEEEeC--------CeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCcc--ceec
Q 003087 22 GERVAVAAV--------NQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEE--ITRF 91 (849)
Q Consensus 22 G~~LAsas~--------~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~--~~~l 91 (849)
.++||-.++ +.+.|||.. ...++..+.. ...|.+|.+++| .|+++-. ++|+||...... +..+
T Consensus 58 ~N~laLVGGg~~pky~pNkviIWDD~--k~~~i~el~f--~~~I~~V~l~r~--riVvvl~-~~I~VytF~~n~k~l~~~ 130 (346)
T KOG2111|consen 58 SNYLALVGGGSRPKYPPNKVIIWDDL--KERCIIELSF--NSEIKAVKLRRD--RIVVVLE-NKIYVYTFPDNPKLLHVI 130 (346)
T ss_pred hceEEEecCCCCCCCCCceEEEEecc--cCcEEEEEEe--ccceeeEEEcCC--eEEEEec-CeEEEEEcCCChhheeee
Confidence 356665432 268899832 2334444432 568999999865 4555543 579999986432 2221
Q ss_pred ccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCC
Q 003087 92 TNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPE 171 (849)
Q Consensus 92 ~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPd 171 (849)
.... . ..-..++.-.-...+.+ +-+-.-|.|++-|+....... +.... .|...|.||+.+-+
T Consensus 131 et~~-N-PkGlC~~~~~~~k~~La------fPg~k~GqvQi~dL~~~~~~~---------p~~I~-AH~s~Iacv~Ln~~ 192 (346)
T KOG2111|consen 131 ETRS-N-PKGLCSLCPTSNKSLLA------FPGFKTGQVQIVDLASTKPNA---------PSIIN-AHDSDIACVALNLQ 192 (346)
T ss_pred eccc-C-CCceEeecCCCCceEEE------cCCCccceEEEEEhhhcCcCC---------ceEEE-cccCceeEEEEcCC
Confidence 1100 0 00122222110111110 011345889999987544310 11223 45668999999999
Q ss_pred CceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCC
Q 003087 172 LSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNG 251 (849)
Q Consensus 172 g~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dg 251 (849)
|.++|++|..|| .||+|+..++..++.+ . +|. ....|++|+||||+++||.+|.-|
T Consensus 193 Gt~vATaStkGT------------LIRIFdt~~g~~l~E~---R--------RG~-d~A~iy~iaFSp~~s~LavsSdKg 248 (346)
T KOG2111|consen 193 GTLVATASTKGT------------LIRIFDTEDGTLLQEL---R--------RGV-DRADIYCIAFSPNSSWLAVSSDKG 248 (346)
T ss_pred ccEEEEeccCcE------------EEEEEEcCCCcEeeee---e--------cCC-chheEEEEEeCCCccEEEEEcCCC
Confidence 999999999887 4999998876422221 1 121 235799999999999999999999
Q ss_pred cEEEEecCCC
Q 003087 252 CLYIFEMDKD 261 (849)
Q Consensus 252 tv~LWd~~~~ 261 (849)
||+|+.+...
T Consensus 249 TlHiF~l~~~ 258 (346)
T KOG2111|consen 249 TLHIFSLRDT 258 (346)
T ss_pred eEEEEEeecC
Confidence 9999998764
No 210
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.08 E-value=7.1e-09 Score=118.64 Aligned_cols=195 Identities=15% Similarity=0.139 Sum_probs=114.8
Q ss_pred ceEEEEEcCCCCeEEEEeC----CeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEE-EeCCC--cEEEEecC
Q 003087 12 KQVSLFISPRGERVAVAAV----NQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGI-VDDTH--TVYFFKAN 84 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas~----~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs-~~~dg--tIrlWd~~ 84 (849)
.+.+.+|||||++||.++. ..|.+|+..++. .. ... .....+.+.+|||||+.|+. .+.++ .|++|++.
T Consensus 191 ~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~--~~-~~~-~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~ 266 (417)
T TIGR02800 191 PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ--RE-KVA-SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD 266 (417)
T ss_pred ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC--EE-Eee-cCCCCccceEECCCCCEEEEEECCCCCccEEEEECC
Confidence 4788999999999998852 368889876431 11 111 11334567899999998875 44444 58889988
Q ss_pred CccceecccccccccccEEEEEecCCcccccccceeEEEEe-CCC--cEEEEEecCCCCcccccccccCCcceeccccCC
Q 003087 85 GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFT-SDG--FLHQIEISQDPSASISSASASSSGLTLRRQFPQ 161 (849)
Q Consensus 85 g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s-~Dg--~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (849)
++....+..+. .......|+|++.. ++..+ .+| .|.++++.++.... +. ....
T Consensus 267 ~~~~~~l~~~~----~~~~~~~~s~dg~~-------l~~~s~~~g~~~iy~~d~~~~~~~~------------l~-~~~~ 322 (417)
T TIGR02800 267 GKQLTRLTNGP----GIDTEPSWSPDGKS-------IAFTSDRGGSPQIYMMDADGGEVRR------------LT-FRGG 322 (417)
T ss_pred CCCEEECCCCC----CCCCCEEECCCCCE-------EEEEECCCCCceEEEEECCCCCEEE------------ee-cCCC
Confidence 66555554432 12234567765432 22222 334 35555554433211 11 1122
Q ss_pred ceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCC
Q 003087 162 NVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQG 241 (849)
Q Consensus 162 ~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG 241 (849)
.+..++|||||+.++.++.++ |...|.+|++.++. .+.+. ........+|||||
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~----------~~~~i~~~d~~~~~-~~~l~---------------~~~~~~~p~~spdg 376 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREG----------GGFNIAVMDLDGGG-ERVLT---------------DTGLDESPSFAPNG 376 (417)
T ss_pred CccCeEECCCCCEEEEEEccC----------CceEEEEEeCCCCC-eEEcc---------------CCCCCCCceECCCC
Confidence 467889999999998877654 22246677766531 11111 01123457899999
Q ss_pred CEEEEEeCCCc---EEEEecCC
Q 003087 242 KFVATSDTNGC---LYIFEMDK 260 (849)
Q Consensus 242 ~~LAs~s~Dgt---v~LWd~~~ 260 (849)
+.|+.++.++. +.+.+..+
T Consensus 377 ~~l~~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 377 RMILYATTRGGRGVLGLVSTDG 398 (417)
T ss_pred CEEEEEEeCCCcEEEEEEECCC
Confidence 99998887653 44444443
No 211
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.07 E-value=1.2e-08 Score=118.71 Aligned_cols=244 Identities=12% Similarity=0.045 Sum_probs=145.2
Q ss_pred eEEEEecCCCCCcceeeeeecCCCCEEEEEECC-CCCEEEEEeCCCcEEEEecCCcc---ceecccccccccccEEEEEe
Q 003087 32 QVTILQKDDDYQEPCGIFNCTGLGASIYGAWSE-SHDVLGIVDDTHTVYFFKANGEE---ITRFTNKHLKVSLPIIGLIA 107 (849)
Q Consensus 32 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSP-DG~~LAs~~~dgtIrlWd~~g~~---~~~l~~~~~~~~~~V~~l~f 107 (849)
.+-||+..+. ..|...+. -...|+++.|+| +..+||.|..+|.|-+||+.+.. ...+......+..+|..+.+
T Consensus 223 ~~~vW~~~~p-~~Pe~~~~--~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 223 VLLVWSLKNP-NTPELVLE--SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred eEEEEecCCC-CCceEEEe--cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 4678987764 33433333 257899999999 67788889999999999997433 22332222334456777776
Q ss_pred cCCcccccccceeEEEEeCCCcEEEEEecCCCCc-cccc-ccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCc
Q 003087 108 QDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSA-SISS-ASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSS 185 (849)
Q Consensus 108 s~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~-~~~~-~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~ 185 (849)
-.+..- ..|++++.||.|+.|++..-... .... ........++. -..++.+++|.|.......+|.+.
T Consensus 300 ~~~~~~-----~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~--~~~~~t~~~F~~~~p~~FiVGTe~--- 369 (555)
T KOG1587|consen 300 LQNEHN-----TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSS--KAVGATSLKFEPTDPNHFIVGTEE--- 369 (555)
T ss_pred eccCCC-----CceEEEecCCcEeeeeccccccchhhcccccccccccccc--cccceeeEeeccCCCceEEEEcCC---
Confidence 432111 24888899999999987643221 1100 00000000111 123689999999665443444443
Q ss_pred cccCCCCCCceeeEEEecC-CcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCccc
Q 003087 186 LTSSGNSGPCCISLWRRCH-NLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFS 264 (849)
Q Consensus 186 ~~~~~~~G~~~I~lW~~~~-~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~ 264 (849)
|. |.-=...+ ....+.+..++. .+.. |.+.|+.|.+||=+..+...+.|.+|+||.-.....+
T Consensus 370 -------G~--v~~~~r~g~~~~~~~~~~~~~-----~~~~--h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~P 433 (555)
T KOG1587|consen 370 -------GK--VYKGCRKGYTPAPEVSYKGHS-----TFIT--HIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASP 433 (555)
T ss_pred -------cE--EEEEeccCCcccccccccccc-----cccc--cCcceEeeecCCCccceeeeeccceeEeccccCCCCc
Confidence 21 22111111 111111111110 1122 7789999999999988777777999999988722222
Q ss_pred ccccccccccccccccccCCCCCCCCCCcEEEEEecCC--EEEEEEeCCcEEEEEecCCc
Q 003087 265 LSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDN--ILILARKSSIITMIDVLSGL 322 (849)
Q Consensus 265 l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~--~la~a~~dgti~lwdl~~~~ 322 (849)
+-.+. .+...|.+++|||-. ..+++..+|+|-+||+....
T Consensus 434 l~~~~------------------~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~ 475 (555)
T KOG1587|consen 434 LLSLD------------------SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD 475 (555)
T ss_pred chhhh------------------hccceeeeeEEcCcCceEEEEEcCCCceehhhhhccc
Confidence 22221 123458999999975 36788899999999997543
No 212
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.06 E-value=3.4e-09 Score=108.62 Aligned_cols=114 Identities=18% Similarity=0.277 Sum_probs=79.8
Q ss_pred ceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCC
Q 003087 162 NVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQG 241 (849)
Q Consensus 162 ~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG 241 (849)
.|.+++|+|+|+.+|+...... + .|++|++... .+... +...+..|.|||+|
T Consensus 61 ~I~~~~WsP~g~~favi~g~~~---------~--~v~lyd~~~~----~i~~~-------------~~~~~n~i~wsP~G 112 (194)
T PF08662_consen 61 PIHDVAWSPNGNEFAVIYGSMP---------A--KVTLYDVKGK----KIFSF-------------GTQPRNTISWSPDG 112 (194)
T ss_pred ceEEEEECcCCCEEEEEEccCC---------c--ccEEEcCccc----EeEee-------------cCCCceEEEECCCC
Confidence 5999999999999877643310 1 3899998632 22221 23467789999999
Q ss_pred CEEEEEeCC---CcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEE------eCC
Q 003087 242 KFVATSDTN---GCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILAR------KSS 311 (849)
Q Consensus 242 ~~LAs~s~D---gtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~------~dg 311 (849)
++||+++.+ |.|.+||+.+... +.+. ++ ..+.+++|+|||+ ++++. -|+
T Consensus 113 ~~l~~~g~~n~~G~l~~wd~~~~~~-i~~~-------------------~~-~~~t~~~WsPdGr~~~ta~t~~r~~~dn 171 (194)
T PF08662_consen 113 RFLVLAGFGNLNGDLEFWDVRKKKK-ISTF-------------------EH-SDATDVEWSPDGRYLATATTSPRLRVDN 171 (194)
T ss_pred CEEEEEEccCCCcEEEEEECCCCEE-eecc-------------------cc-CcEEEEEEcCCCCEEEEEEeccceeccc
Confidence 999999754 6799999996533 2221 12 3468899999997 44443 378
Q ss_pred cEEEEEecCCcccc
Q 003087 312 IITMIDVLSGLKVK 325 (849)
Q Consensus 312 ti~lwdl~~~~~l~ 325 (849)
.++||+..+ +.+.
T Consensus 172 g~~Iw~~~G-~~l~ 184 (194)
T PF08662_consen 172 GFKIWSFQG-RLLY 184 (194)
T ss_pred cEEEEEecC-eEeE
Confidence 999999964 4443
No 213
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.06 E-value=2e-08 Score=116.22 Aligned_cols=160 Identities=16% Similarity=0.138 Sum_probs=92.0
Q ss_pred CCCEEEEEECCCCCEEEEEeCC-C--cEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCc-
Q 003087 54 LGASIYGAWSESHDVLGIVDDT-H--TVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGF- 129 (849)
Q Consensus 54 ~~~v~~vafSPDG~~LAs~~~d-g--tIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~- 129 (849)
...+.+.+|||||+.||..+.+ + .|++||+.+.....+.... ....+.+|+||+... +++.+.+|.
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~----g~~~~~~wSPDG~~L------a~~~~~~g~~ 286 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP----GINGAPRFSPDGKKL------ALVLSKDGQP 286 (448)
T ss_pred CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC----CCcCCeeECCCCCEE------EEEEeCCCCe
Confidence 4567789999999999987543 3 5888898755434443211 122356788876532 123356676
Q ss_pred -EEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCc
Q 003087 130 -LHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLEL 208 (849)
Q Consensus 130 -v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~ 208 (849)
|.++++.++.... +..+ ...+...+|||||+.|+..+..+ |...|.++++.++. .
T Consensus 287 ~Iy~~dl~tg~~~~------------lt~~-~~~~~~p~wSpDG~~I~f~s~~~----------g~~~Iy~~dl~~g~-~ 342 (448)
T PRK04792 287 EIYVVDIATKALTR------------ITRH-RAIDTEPSWHPDGKSLIFTSERG----------GKPQIYRVNLASGK-V 342 (448)
T ss_pred EEEEEECCCCCeEE------------CccC-CCCccceEECCCCCEEEEEECCC----------CCceEEEEECCCCC-E
Confidence 5555655443321 1111 22357789999999988766432 22224444544431 1
Q ss_pred ccceeccccceeeccCCCccccccceEEEccCCCEEEEEeC-CCcEEE--EecCCC
Q 003087 209 EQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDT-NGCLYI--FEMDKD 261 (849)
Q Consensus 209 ~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~-Dgtv~L--Wd~~~~ 261 (849)
..+. ..+ ......+|||||++|+..+. ++..+| +|+.++
T Consensus 343 ~~Lt----------~~g----~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g 384 (448)
T PRK04792 343 SRLT----------FEG----EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG 384 (448)
T ss_pred EEEe----------cCC----CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 1111 011 12345799999999988765 455555 455554
No 214
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.04 E-value=1.3e-08 Score=108.49 Aligned_cols=196 Identities=14% Similarity=0.202 Sum_probs=121.1
Q ss_pred eEEEEEcCCCCeEEEEe-C--CeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCc-cc
Q 003087 13 QVSLFISPRGERVAVAA-V--NQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGE-EI 88 (849)
Q Consensus 13 v~slafSPdG~~LAsas-~--~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~-~~ 88 (849)
|.-.-||. .+||.++ + ...++.+...+ ..+..+.. ...|.+|.+. -++|++.=.+. |+|+|+..- .+
T Consensus 49 IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~--~~ICe~~f--pt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklL 119 (391)
T KOG2110|consen 49 IVEMLFSS--SLVAIVSIKQPRKLKVVHFKKK--TTICEIFF--PTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLL 119 (391)
T ss_pred EEEeeccc--ceeEEEecCCCceEEEEEcccC--ceEEEEec--CCceEEEEEc--cceEEEEEccc-EEEEecccceee
Confidence 33344554 3666665 2 24666664321 12222221 4567778776 45666655544 999999753 34
Q ss_pred eecccccccccccEEEEEecCCc--ccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEE
Q 003087 89 TRFTNKHLKVSLPIIGLIAQDET--DVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT 166 (849)
Q Consensus 89 ~~l~~~~~~~~~~V~~l~fs~~~--~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv 166 (849)
.++...... ...+.++.++... .+-.+ ....|.|.+||+.+-+....++ -|+..+-++
T Consensus 120 hTI~t~~~n-~~gl~AlS~n~~n~ylAyp~-------s~t~GdV~l~d~~nl~~v~~I~------------aH~~~lAal 179 (391)
T KOG2110|consen 120 HTIETTPPN-PKGLCALSPNNANCYLAYPG-------STTSGDVVLFDTINLQPVNTIN------------AHKGPLAAL 179 (391)
T ss_pred hhhhccCCC-ccceEeeccCCCCceEEecC-------CCCCceEEEEEcccceeeeEEE------------ecCCceeEE
Confidence 444321100 1224444444321 11111 1457899999987644433322 456789999
Q ss_pred EEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEE
Q 003087 167 DYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVAT 246 (849)
Q Consensus 167 afsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs 246 (849)
+|||||.+||+||..||+ ||++.+..+ +.+...+. |++ --.|++++||||+++|++
T Consensus 180 afs~~G~llATASeKGTV------------IRVf~v~~G---~kl~eFRR-G~~--------~~~IySL~Fs~ds~~L~~ 235 (391)
T KOG2110|consen 180 AFSPDGTLLATASEKGTV------------IRVFSVPEG---QKLYEFRR-GTY--------PVSIYSLSFSPDSQFLAA 235 (391)
T ss_pred EECCCCCEEEEeccCceE------------EEEEEcCCc---cEeeeeeC-Cce--------eeEEEEEEECCCCCeEEE
Confidence 999999999999988874 899888654 34433221 222 137899999999999999
Q ss_pred EeCCCcEEEEecCCC
Q 003087 247 SDTNGCLYIFEMDKD 261 (849)
Q Consensus 247 ~s~Dgtv~LWd~~~~ 261 (849)
.|..+||+|+.++..
T Consensus 236 sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 236 SSNTETVHIFKLEKV 250 (391)
T ss_pred ecCCCeEEEEEeccc
Confidence 999999999999853
No 215
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.04 E-value=6.5e-09 Score=110.35 Aligned_cols=208 Identities=12% Similarity=0.132 Sum_probs=137.8
Q ss_pred CEEEEEECCCCCEEEEEeCCCcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEe
Q 003087 56 ASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEI 135 (849)
Q Consensus 56 ~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~ 135 (849)
.++.+||.|-=--+|++..|.+||++|-+.++...+.... ...|.+|+|.|-+ ++ .|++ +-.+-|.+|..
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~s---QrnvtclawRPls---as---elav-gCr~gIciW~~ 169 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVS---QRNVTCLAWRPLS---AS---ELAV-GCRAGICIWSD 169 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchh---hcceeEEEeccCC---cc---eeee-eecceeEEEEc
Confidence 4678999996666789999999999998875533332211 1468999998832 11 2444 44566899988
Q ss_pred cCCCCcc-cccccccCCc---ceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccc
Q 003087 136 SQDPSAS-ISSASASSSG---LTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQL 211 (849)
Q Consensus 136 ~~~~~~~-~~~~~~~~~~---~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l 211 (849)
+...... ...++. .++ ++-.|| ..|.++.|.+||..|++++.++. .|.+|+++.+.. .++
T Consensus 170 s~tln~~r~~~~~s-~~~~qvl~~pgh--~pVtsmqwn~dgt~l~tAS~gss------------si~iWdpdtg~~-~pL 233 (445)
T KOG2139|consen 170 SRTLNANRNIRMMS-THHLQVLQDPGH--NPVTSMQWNEDGTILVTASFGSS------------SIMIWDPDTGQK-IPL 233 (445)
T ss_pred Cccccccccccccc-ccchhheeCCCC--ceeeEEEEcCCCCEEeecccCcc------------eEEEEcCCCCCc-ccc
Confidence 7533321 111111 222 222323 46999999999999999887752 499999987632 112
Q ss_pred eeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCC
Q 003087 212 YTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPIS 291 (849)
Q Consensus 212 ~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (849)
. ++| -+++.-+.|||||..|..+..|++.+||+....-- -..|.+ ..+
T Consensus 234 ~----------~~g---lgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt-~erw~l------------------gsg 281 (445)
T KOG2139|consen 234 I----------PKG---LGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWT-KERWIL------------------GSG 281 (445)
T ss_pred c----------ccC---CCceeeEEEcCCCCEEEEecccceeeeehhcccce-ecceec------------------cCC
Confidence 1 111 24677899999999999999999999996653100 012221 124
Q ss_pred CcEEEEEecCCEEEEEEeCCcEEEEEecCC
Q 003087 292 DITDFAWWSDNILILARKSSIITMIDVLSG 321 (849)
Q Consensus 292 ~v~~vaws~D~~la~a~~dgti~lwdl~~~ 321 (849)
.|....|+|+|..++-...|.-+|+++.--
T Consensus 282 rvqtacWspcGsfLLf~~sgsp~lysl~f~ 311 (445)
T KOG2139|consen 282 RVQTACWSPCGSFLLFACSGSPRLYSLTFD 311 (445)
T ss_pred ceeeeeecCCCCEEEEEEcCCceEEEEeec
Confidence 688899999998666666777778877543
No 216
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.04 E-value=4.4e-09 Score=116.03 Aligned_cols=233 Identities=13% Similarity=0.075 Sum_probs=144.9
Q ss_pred ccccceEEEEEcCCCCeEEEEeCCeEEEEec-CCCCCcceeeee----ecC-CCCEEEEEECCCCCEEEEEeCCCcEEEE
Q 003087 8 RKTKKQVSLFISPRGERVAVAAVNQVTILQK-DDDYQEPCGIFN----CTG-LGASIYGAWSESHDVLGIVDDTHTVYFF 81 (849)
Q Consensus 8 ~~~~~v~slafSPdG~~LAsas~~~i~iw~~-~~~~~~~~~~~~----~~~-~~~v~~vafSPDG~~LAs~~~dgtIrlW 81 (849)
|..+.|.++.++.+...+-+++|+.+.+|+. ..+..+ ..... +.. +..-++..=--....++.++.||.+.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~-~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVE-VAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhh-hhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 3446788999999999998888888777753 222111 11111 000 0000111101134678899999999999
Q ss_pred ecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCC
Q 003087 82 KANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQ 161 (849)
Q Consensus 82 d~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (849)
+-.|+.-..+..| ..+|.+-.++|++.. +.+.+.||.|++|.-+ |-..++.. +...
T Consensus 91 ~k~~rVE~sv~AH----~~A~~~gRW~~dGtg-------Llt~GEDG~iKiWSrs-GMLRStl~------------Q~~~ 146 (737)
T KOG1524|consen 91 NKSARVERSISAH----AAAISSGRWSPDGAG-------LLTAGEDGVIKIWSRS-GMLRSTVV------------QNEE 146 (737)
T ss_pred cccchhhhhhhhh----hhhhhhcccCCCCce-------eeeecCCceEEEEecc-chHHHHHh------------hcCc
Confidence 8888754444333 245655566666543 5667999999999754 22222211 4455
Q ss_pred ceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCC
Q 003087 162 NVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQG 241 (849)
Q Consensus 162 ~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG 241 (849)
.|+|++|.|+..-++-+-.+ .|.|+=-.++.. .| +-+. |.+-|-++.|||.+
T Consensus 147 ~v~c~~W~p~S~~vl~c~g~------------h~~IKpL~~n~k----~i----------~WkA--HDGiiL~~~W~~~s 198 (737)
T KOG1524|consen 147 SIRCARWAPNSNSIVFCQGG------------HISIKPLAANSK----II----------RWRA--HDGLVLSLSWSTQS 198 (737)
T ss_pred eeEEEEECCCCCceEEecCC------------eEEEeecccccc----ee----------EEec--cCcEEEEeecCccc
Confidence 79999999999876543222 234433222221 01 0122 77789999999999
Q ss_pred CEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEE
Q 003087 242 KFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIIT 314 (849)
Q Consensus 242 ~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~ 314 (849)
.++||||.|-..++||..+... |.. ..|..++.+|+|.||.-.++++. ++++
T Consensus 199 ~lI~sgGED~kfKvWD~~G~~L----f~S----------------~~~ey~ITSva~npd~~~~v~S~-nt~R 250 (737)
T KOG1524|consen 199 NIIASGGEDFRFKIWDAQGANL----FTS----------------AAEEYAITSVAFNPEKDYLLWSY-NTAR 250 (737)
T ss_pred cceeecCCceeEEeecccCccc----ccC----------------Chhccceeeeeeccccceeeeee-eeee
Confidence 9999999999999999987521 211 12446799999999954555553 3444
No 217
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.04 E-value=2.6e-08 Score=104.47 Aligned_cols=242 Identities=15% Similarity=0.184 Sum_probs=153.6
Q ss_pred cceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeecCCC-CEEEEEECCCCCEEEE-EeCC------CcEEEEe
Q 003087 11 KKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLG-ASIYGAWSESHDVLGI-VDDT------HTVYFFK 82 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~-~v~~vafSPDG~~LAs-~~~d------gtIrlWd 82 (849)
....+++|..|.--.|+|-++..+|++.+. +.. ...-+..+.+ .+.-+=| -.++||- |+.+ ..|-|||
T Consensus 6 ~~~lsvs~NQD~ScFava~~~Gfriyn~~P-~ke-~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVATDTGFRIYNCDP-FKE-SASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred CceeEEEEccCCceEEEEecCceEEEecCc-hhh-hhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEe
Confidence 456779999999999999988899998652 111 0011111111 1111222 2467774 3333 4688998
Q ss_pred c-CCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCc-ccccccccCCcceeccccC
Q 003087 83 A-NGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSA-SISSASASSSGLTLRRQFP 160 (849)
Q Consensus 83 ~-~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~-~~~~~~~~~~~~~l~~~~~ 160 (849)
= ...++.++ .+.++|.+|.++++..+. -..+.|.+|.+.++..+ ..++ -. -.|
T Consensus 82 D~k~~~i~el-----~f~~~I~~V~l~r~riVv----------vl~~~I~VytF~~n~k~l~~~e---------t~-~NP 136 (346)
T KOG2111|consen 82 DLKERCIIEL-----SFNSEIKAVKLRRDRIVV----------VLENKIYVYTFPDNPKLLHVIE---------TR-SNP 136 (346)
T ss_pred cccCcEEEEE-----EeccceeeEEEcCCeEEE----------EecCeEEEEEcCCChhheeeee---------cc-cCC
Confidence 3 24444333 345678888887765432 35677888988754322 2211 01 124
Q ss_pred CceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccC
Q 003087 161 QNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQ 240 (849)
Q Consensus 161 ~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPD 240 (849)
++..++.=+.+-.+||--|.. .|+ |++=++.......+. .+ +. |...|.+|+++-|
T Consensus 137 kGlC~~~~~~~k~~LafPg~k----------~Gq--vQi~dL~~~~~~~p~-------~I---~A--H~s~Iacv~Ln~~ 192 (346)
T KOG2111|consen 137 KGLCSLCPTSNKSLLAFPGFK----------TGQ--VQIVDLASTKPNAPS-------II---NA--HDSDIACVALNLQ 192 (346)
T ss_pred CceEeecCCCCceEEEcCCCc----------cce--EEEEEhhhcCcCCce-------EE---Ec--ccCceeEEEEcCC
Confidence 556666655566666654443 255 788777654211111 11 22 8899999999999
Q ss_pred CCEEEEEeCCCc-EEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEe
Q 003087 241 GKFVATSDTNGC-LYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDV 318 (849)
Q Consensus 241 G~~LAs~s~Dgt-v~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl 318 (849)
|.+|||+|..|| |||||..+++. +.-+. ||-..+.++.++||||.. ||++|..|||.|+.+
T Consensus 193 Gt~vATaStkGTLIRIFdt~~g~~-l~E~R----------------RG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 193 GTLVATASTKGTLIRIFDTEDGTL-LQELR----------------RGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSL 255 (346)
T ss_pred ccEEEEeccCcEEEEEEEcCCCcE-eeeee----------------cCCchheEEEEEeCCCccEEEEEcCCCeEEEEEe
Confidence 999999999998 58999998864 33332 223346799999999986 778899999999999
Q ss_pred cCCc
Q 003087 319 LSGL 322 (849)
Q Consensus 319 ~~~~ 322 (849)
....
T Consensus 256 ~~~~ 259 (346)
T KOG2111|consen 256 RDTE 259 (346)
T ss_pred ecCC
Confidence 7644
No 218
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.03 E-value=2.8e-09 Score=114.10 Aligned_cols=165 Identities=11% Similarity=0.103 Sum_probs=116.1
Q ss_pred ccEEEEEecC-CcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCc-eEEE
Q 003087 100 LPIIGLIAQD-ETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELS-LLSV 177 (849)
Q Consensus 100 ~~V~~l~fs~-~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~-lLas 177 (849)
.+|..++|.| +-. -++++|.|.+|.+|.+..+....-+. .....|.|| ...|..|+|||--. .|++
T Consensus 82 ~~vLDi~w~PfnD~-------vIASgSeD~~v~vW~IPe~~l~~~lt----epvv~L~gH-~rrVg~V~wHPtA~NVLls 149 (472)
T KOG0303|consen 82 APVLDIDWCPFNDC-------VIASGSEDTKVMVWQIPENGLTRDLT----EPVVELYGH-QRRVGLVQWHPTAPNVLLS 149 (472)
T ss_pred ccccccccCccCCc-------eeecCCCCceEEEEECCCcccccCcc----cceEEEeec-ceeEEEEeecccchhhHhh
Confidence 5788888877 222 24556899999999997655432211 223456655 55699999999654 6788
Q ss_pred EecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEe
Q 003087 178 VSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFE 257 (849)
Q Consensus 178 ~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd 257 (849)
+|+|. +|.+|++.++.. +.+. . |.+-|++|+|+-||.+|+|+..|..|||||
T Consensus 150 ag~Dn-------------~v~iWnv~tgea---li~l----------~--hpd~i~S~sfn~dGs~l~TtckDKkvRv~d 201 (472)
T KOG0303|consen 150 AGSDN-------------TVSIWNVGTGEA---LITL----------D--HPDMVYSMSFNRDGSLLCTTCKDKKVRVID 201 (472)
T ss_pred ccCCc-------------eEEEEeccCCce---eeec----------C--CCCeEEEEEeccCCceeeeecccceeEEEc
Confidence 99997 389999988632 2221 2 888999999999999999999999999999
Q ss_pred cCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEE----eCCcEEEEEecCCc
Q 003087 258 MDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILAR----KSSIITMIDVLSGL 322 (849)
Q Consensus 258 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~----~dgti~lwdl~~~~ 322 (849)
..++.. ++--..++ + .....+-|-.+|.+++++ .+..+-+||-.+..
T Consensus 202 pr~~~~-v~e~~~he---------------G--~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~ 252 (472)
T KOG0303|consen 202 PRRGTV-VSEGVAHE---------------G--AKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLE 252 (472)
T ss_pred CCCCcE-eeeccccc---------------C--CCcceeEEeccCceeeeccccccccceeccCccccc
Confidence 998743 21111110 1 123456777888877765 44578899977665
No 219
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.01 E-value=6.5e-08 Score=111.28 Aligned_cols=205 Identities=13% Similarity=0.118 Sum_probs=111.3
Q ss_pred CEEEEEECCCCCEEE---EEeCCC--cEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeC----
Q 003087 56 ASIYGAWSESHDVLG---IVDDTH--TVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTS---- 126 (849)
Q Consensus 56 ~v~~vafSPDG~~LA---s~~~dg--tIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~---- 126 (849)
...+=+|||||+.++ +...+| .|++.++.|.....+.... ......+|+||+...+ ++.+.
T Consensus 186 ~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~----g~~~~p~wSPDG~~La------f~s~~~g~~ 255 (428)
T PRK01029 186 LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQ----GNQLMPTFSPRKKLLA------FISDRYGNP 255 (428)
T ss_pred CcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCC----CCccceEECCCCCEEE------EEECCCCCc
Confidence 446779999998643 344444 4677788766544543322 2234567888764321 11122
Q ss_pred CCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCc
Q 003087 127 DGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNL 206 (849)
Q Consensus 127 Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~ 206 (849)
|..+..|++..+..... ..+..+....+...+|||||+.||.++..+ |. ..+|.+.-..
T Consensus 256 di~~~~~~~~~g~~g~~---------~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~----------g~--~~ly~~~~~~ 314 (428)
T PRK01029 256 DLFIQSFSLETGAIGKP---------RRLLNEAFGTQGNPSFSPDGTRLVFVSNKD----------GR--PRIYIMQIDP 314 (428)
T ss_pred ceeEEEeecccCCCCcc---------eEeecCCCCCcCCeEECCCCCEEEEEECCC----------CC--ceEEEEECcc
Confidence 33445566654321110 011111112246789999999988766432 22 3556543210
Q ss_pred CcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCC---CcEEEEecCCCcccccccccccccccccccccC
Q 003087 207 ELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTN---GCLYIFEMDKDNFSLSKFACGERFDLQVADSLF 283 (849)
Q Consensus 207 ~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~D---gtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~ 283 (849)
..... ..+. . +...+...+|||||+.||..+.+ ..|.+||+.+++. ..+.
T Consensus 315 ~g~~~------~~lt---~--~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~--~~Lt-------------- 367 (428)
T PRK01029 315 EGQSP------RLLT---K--KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD--YQLT-------------- 367 (428)
T ss_pred cccce------EEec---c--CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe--EEcc--------------
Confidence 00000 0010 0 22356688999999999977653 3688999987743 2222
Q ss_pred CCCCCCCCCcEEEEEecCCE-EEEE-EeC--CcEEEEEecCCc
Q 003087 284 DGRTKPISDITDFAWWSDNI-LILA-RKS--SIITMIDVLSGL 322 (849)
Q Consensus 284 ~~~~~~~~~v~~vaws~D~~-la~a-~~d--gti~lwdl~~~~ 322 (849)
.. ...+.+.+|+|||+ |+.. ..+ +.|.++|+.+++
T Consensus 368 ~~----~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 368 TS----PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred CC----CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 11 12345689999986 4433 322 367788887765
No 220
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.00 E-value=1.7e-08 Score=111.83 Aligned_cols=214 Identities=14% Similarity=0.107 Sum_probs=130.1
Q ss_pred eEEEEEcCCCCeEEEEeCCeEEEEecC--CCCCcceeeeeecCCC----CEEEEEECCCCCEEEEEeCCCcEEEEecCCc
Q 003087 13 QVSLFISPRGERVAVAAVNQVTILQKD--DDYQEPCGIFNCTGLG----ASIYGAWSESHDVLGIVDDTHTVYFFKANGE 86 (849)
Q Consensus 13 v~slafSPdG~~LAsas~~~i~iw~~~--~~~~~~~~~~~~~~~~----~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~ 86 (849)
+.+..++-.|++|.-.-+..+-+|+.. ++...++.+....+.. .+....=.|+|--|..|-..|-|.+.|..-.
T Consensus 126 ~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~ 205 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINF 205 (636)
T ss_pred eeeccccCCCCEEEEecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhh
Confidence 456667777888876666677788755 2223333332222211 1222233678888888999999999887655
Q ss_pred cceeccccccc-ccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecC-----CCCccccc--ccc----------
Q 003087 87 EITRFTNKHLK-VSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQ-----DPSASISS--ASA---------- 148 (849)
Q Consensus 87 ~~~~l~~~~~~-~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~-----~~~~~~~~--~~~---------- 148 (849)
++..+.+.... ....|.++.+-|+... .|.++-.+|.+.++|... .+.-+++. ..+
T Consensus 206 ~~sklfne~r~i~ktsvT~ikWvpg~~~------~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~ 279 (636)
T KOG2394|consen 206 EVSKLFNEERLINKSSVTCIKWVPGSDS------LFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKT 279 (636)
T ss_pred HHHHhhhhcccccccceEEEEEEeCCCc------eEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeecccc
Confidence 44443332111 1246778887663321 245556677777775421 11111111 000
Q ss_pred --cCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCC
Q 003087 149 --SSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGH 226 (849)
Q Consensus 149 --~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~ 226 (849)
+-..|.+. ...|+.++|||||++||++|.|+ .+|+++.+... + .+.+..+
T Consensus 280 rNPv~~w~~~---~g~in~f~FS~DG~~LA~VSqDG-------------fLRvF~fdt~e----L-----lg~mkSY--- 331 (636)
T KOG2394|consen 280 RNPVARWHIG---EGSINEFAFSPDGKYLATVSQDG-------------FLRIFDFDTQE----L-----LGVMKSY--- 331 (636)
T ss_pred CCccceeEec---cccccceeEcCCCceEEEEecCc-------------eEEEeeccHHH----H-----HHHHHhh---
Confidence 00012221 23699999999999999999997 38999987631 1 1222121
Q ss_pred ccccccceEEEccCCCEEEEEeCCCcEEEEecCCCc
Q 003087 227 EVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDN 262 (849)
Q Consensus 227 ~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~ 262 (849)
.++..+|.|||||++||+|+.|.-|.+|.+...+
T Consensus 332 --FGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erR 365 (636)
T KOG2394|consen 332 --FGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERR 365 (636)
T ss_pred --ccceEEEEEcCCccEEEecCCcceEEEEEeccce
Confidence 2367799999999999999999999999998653
No 221
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.00 E-value=1.3e-08 Score=106.77 Aligned_cols=220 Identities=12% Similarity=0.148 Sum_probs=149.8
Q ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEE
Q 003087 54 LGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQI 133 (849)
Q Consensus 54 ~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw 133 (849)
...|++-||++|++.+|.+-.+..|+|+...|..+........++...|.+|.++|... .+.+++.|..-.+|
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn-------rIvtcs~drnayVw 82 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN-------RIVTCSHDRNAYVW 82 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC-------ceeEccCCCCcccc
Confidence 45789999999999999999999999999887653322111122345788888877432 35667889999999
Q ss_pred EecC-CCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccce
Q 003087 134 EISQ-DPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLY 212 (849)
Q Consensus 134 ~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~ 212 (849)
.... +.-..++ .|. .+...+.+|.|+|.++.+|+||... .|.+|-..+..+. +
T Consensus 83 ~~~~~~~Wkptl---------vLl-RiNrAAt~V~WsP~enkFAVgSgar-------------~isVcy~E~ENdW---W 136 (361)
T KOG1523|consen 83 TQPSGGTWKPTL---------VLL-RINRAATCVKWSPKENKFAVGSGAR-------------LISVCYYEQENDW---W 136 (361)
T ss_pred ccCCCCeeccce---------eEE-EeccceeeEeecCcCceEEeccCcc-------------EEEEEEEecccce---e
Confidence 8733 3322221 122 3456799999999999999998776 4888887664321 1
Q ss_pred eccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcc----c----ccccccccccccccccccCC
Q 003087 213 TTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNF----S----LSKFACGERFDLQVADSLFD 284 (849)
Q Consensus 213 ~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~----~----l~~~~~~~~~~~~~~~~l~~ 284 (849)
.+++.+..+...|.+++|.|++-+||.|+.|+..|++...-... . -.++++++ ...+++
T Consensus 137 -------VsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~-----lm~E~~- 203 (361)
T KOG1523|consen 137 -------VSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQ-----LMSEAS- 203 (361)
T ss_pred -------hhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHH-----HHHhhc-
Confidence 01111111567899999999999999999999999997652210 0 00111110 001111
Q ss_pred CCCCCCCCcEEEEEecCC-EEEEEEeCCcEEEEEecCCc
Q 003087 285 GRTKPISDITDFAWWSDN-ILILARKSSIITMIDVLSGL 322 (849)
Q Consensus 285 ~~~~~~~~v~~vaws~D~-~la~a~~dgti~lwdl~~~~ 322 (849)
...+++..|.|+|+| +|+=.+.|+++.+=|-....
T Consensus 204 ---~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 204 ---SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ---cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 234679999999987 58888999999998877654
No 222
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.00 E-value=4.4e-08 Score=113.95 Aligned_cols=255 Identities=13% Similarity=0.104 Sum_probs=154.3
Q ss_pred cceEEEEEcCCCCe-EEEEe-CCeEEEEecCCCCCc-ceeeee--ecCCCCEEEEEECCC--CCEEEEEeCCCcEEEEec
Q 003087 11 KKQVSLFISPRGER-VAVAA-VNQVTILQKDDDYQE-PCGIFN--CTGLGASIYGAWSES--HDVLGIVDDTHTVYFFKA 83 (849)
Q Consensus 11 ~~v~slafSPdG~~-LAsas-~~~i~iw~~~~~~~~-~~~~~~--~~~~~~v~~vafSPD--G~~LAs~~~dgtIrlWd~ 83 (849)
..|.++.|+|.-.. ||.|. +|+|.+||....... +.+... ..+...+..+.|-.+ +.-++|++.||.|..|++
T Consensus 243 s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~ 322 (555)
T KOG1587|consen 243 SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDT 322 (555)
T ss_pred CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeec
Confidence 67899999997654 55554 589999998754332 222221 223567888888543 455999999999999987
Q ss_pred CCcc----ceec--ccc---cccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcc--cccccccCCc
Q 003087 84 NGEE----ITRF--TNK---HLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSAS--ISSASASSSG 152 (849)
Q Consensus 84 ~g~~----~~~l--~~~---~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~--~~~~~~~~~~ 152 (849)
..-. .... ..+ .......+.++.|.+.- .++|++++.+|.|..-+-.....+. .++ .+.
T Consensus 323 ~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~------p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~----~~~ 392 (555)
T KOG1587|consen 323 DMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD------PNHFIVGTEEGKVYKGCRKGYTPAPEVSYK----GHS 392 (555)
T ss_pred cccccchhhcccccccccccccccccceeeEeeccCC------CceEEEEcCCcEEEEEeccCCccccccccc----ccc
Confidence 5311 0000 010 01112356778886521 1358899999998764322111110 111 111
Q ss_pred ceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCcccccc
Q 003087 153 LTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAH 232 (849)
Q Consensus 153 ~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V 232 (849)
.+. -|...|+++.++|=+..+..+++|-| |++|.-.... .++.... . +.+.|
T Consensus 393 -~~~-~h~g~v~~v~~nPF~~k~fls~gDW~-------------vriWs~~~~~--~Pl~~~~---------~--~~~~v 444 (555)
T KOG1587|consen 393 -TFI-THIGPVYAVSRNPFYPKNFLSVGDWT-------------VRIWSEDVIA--SPLLSLD---------S--SPDYV 444 (555)
T ss_pred -ccc-ccCcceEeeecCCCccceeeeeccce-------------eEeccccCCC--Ccchhhh---------h--cccee
Confidence 112 23457999999998876655555653 7889765321 1222111 1 45679
Q ss_pred ceEEEccCC-CEEEEEeCCCcEEEEecCCCcc-cccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEe
Q 003087 233 PKVLISPQG-KFVATSDTNGCLYIFEMDKDNF-SLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARK 309 (849)
Q Consensus 233 ~~vafSPDG-~~LAs~s~Dgtv~LWd~~~~~~-~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~ 309 (849)
..++|||-- ..+|+++.||.|.|||+..... ...+.+ -+.....-+.|++.|+ |++|..
T Consensus 445 ~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~------------------~~~~~l~~~~~s~~g~~lavGd~ 506 (555)
T KOG1587|consen 445 TDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQK------------------VCSPALTRVRWSPNGKLLAVGDA 506 (555)
T ss_pred eeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccc------------------ccccccceeecCCCCcEEEEecC
Confidence 999999965 5688889999999999974311 000100 0112234466777676 678999
Q ss_pred CCcEEEEEecCC
Q 003087 310 SSIITMIDVLSG 321 (849)
Q Consensus 310 dgti~lwdl~~~ 321 (849)
.|++.|+++...
T Consensus 507 ~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 507 NGTTHILKLSES 518 (555)
T ss_pred CCcEEEEEcCch
Confidence 999999999743
No 223
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=5.4e-08 Score=112.18 Aligned_cols=160 Identities=12% Similarity=0.069 Sum_probs=96.6
Q ss_pred CCCEEEEEECCCCCEEEEEeCC---CcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCC--
Q 003087 54 LGASIYGAWSESHDVLGIVDDT---HTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDG-- 128 (849)
Q Consensus 54 ~~~v~~vafSPDG~~LAs~~~d---gtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg-- 128 (849)
...+.+.+|||||+.||..+.+ ..|.+|++.+.....+.... ..+....|+|++... +++.+.+|
T Consensus 198 ~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~----g~~~~~~~SpDG~~l------a~~~~~~g~~ 267 (430)
T PRK00178 198 REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE----GLNGAPAWSPDGSKL------AFVLSKDGNP 267 (430)
T ss_pred CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC----CCcCCeEECCCCCEE------EEEEccCCCc
Confidence 4567899999999999987644 36889999855544443221 123457788866422 12334555
Q ss_pred cEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCc
Q 003087 129 FLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLEL 208 (849)
Q Consensus 129 ~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~ 208 (849)
.|.+||+.++..... . .+...+....|||||+.|+..+..+ |...|.++++.++. .
T Consensus 268 ~Iy~~d~~~~~~~~l------------t-~~~~~~~~~~~spDg~~i~f~s~~~----------g~~~iy~~d~~~g~-~ 323 (430)
T PRK00178 268 EIYVMDLASRQLSRV------------T-NHPAIDTEPFWGKDGRTLYFTSDRG----------GKPQIYKVNVNGGR-A 323 (430)
T ss_pred eEEEEECCCCCeEEc------------c-cCCCCcCCeEECCCCCEEEEEECCC----------CCceEEEEECCCCC-E
Confidence 466667765543211 1 1122356788999999988765432 22235566655432 1
Q ss_pred ccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCC-C--cEEEEecCCC
Q 003087 209 EQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTN-G--CLYIFEMDKD 261 (849)
Q Consensus 209 ~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~D-g--tv~LWd~~~~ 261 (849)
+.+. ..+ ......+|||||+.||..+.+ | .|.+||+.++
T Consensus 324 ~~lt----------~~~----~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg 365 (430)
T PRK00178 324 ERVT----------FVG----NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG 365 (430)
T ss_pred EEee----------cCC----CCccceEECCCCCEEEEEEccCCceEEEEEECCCC
Confidence 1121 011 123357899999999988754 3 4777888776
No 224
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.99 E-value=4.3e-08 Score=117.38 Aligned_cols=266 Identities=11% Similarity=0.051 Sum_probs=154.8
Q ss_pred cceEEEEEcCC-CCeEEEEe-CCeEEEEecCCCC---Ccceeeeeec-CCCCEEEEEECCCCCEEEEEeCCCcEEEEecC
Q 003087 11 KKQVSLFISPR-GERVAVAA-VNQVTILQKDDDY---QEPCGIFNCT-GLGASIYGAWSESHDVLGIVDDTHTVYFFKAN 84 (849)
Q Consensus 11 ~~v~slafSPd-G~~LAsas-~~~i~iw~~~~~~---~~~~~~~~~~-~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~ 84 (849)
..|..++.|++ +.++|+|| ||+|++|+...-. +.....++.. ..+.+..+.+-+.|+.+|+|+.||.|++.+++
T Consensus 1049 ~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id 1128 (1431)
T KOG1240|consen 1049 SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRID 1128 (1431)
T ss_pred ccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcc
Confidence 45566666555 49999998 5899999865211 1112223322 25678999999999999999999999999876
Q ss_pred C---cc----ceecccccccccccEEE-EEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceec
Q 003087 85 G---EE----ITRFTNKHLKVSLPIIG-LIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLR 156 (849)
Q Consensus 85 g---~~----~~~l~~~~~~~~~~V~~-l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~ 156 (849)
- +. ..++.. .+..+.|.+ -+|.... .| -.++.++..+.|..||+......... +
T Consensus 1129 ~~~~~~~~~~~~ri~n--~~~~g~vv~m~a~~~~~---~S--~~lvy~T~~~~iv~~D~r~~~~~w~l-----------k 1190 (1431)
T KOG1240|consen 1129 HYNVSKRVATQVRIPN--LKKDGVVVSMHAFTAIV---QS--HVLVYATDLSRIVSWDTRMRHDAWRL-----------K 1190 (1431)
T ss_pred ccccccceeeeeeccc--ccCCCceEEeecccccc---cc--eeEEEEEeccceEEecchhhhhHHhh-----------h
Confidence 3 11 111111 111122322 2221110 11 02445578888999998765443322 2
Q ss_pred cccC-CceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceE
Q 003087 157 RQFP-QNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKV 235 (849)
Q Consensus 157 ~~~~-~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~v 235 (849)
.... +.|++++.+|-++++++|.+.| .+-+||+.-+. ++.+.+. + +..++..|
T Consensus 1191 ~~~~hG~vTSi~idp~~~WlviGts~G-------------~l~lWDLRF~~---~i~sw~~--------P--~~~~i~~v 1244 (1431)
T KOG1240|consen 1191 NQLRHGLVTSIVIDPWCNWLVIGTSRG-------------QLVLWDLRFRV---PILSWEH--------P--ARAPIRHV 1244 (1431)
T ss_pred cCccccceeEEEecCCceEEEEecCCc-------------eEEEEEeecCc---eeecccC--------c--ccCCcceE
Confidence 1111 3599999999999998876665 27899986542 2323221 1 34566666
Q ss_pred EEc---cCCCEEEEEe--CCCcEEEEecCCCcccccccccccccccccccccCCC---CCC-CCCCcEEEEE-ecCCEEE
Q 003087 236 LIS---PQGKFVATSD--TNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDG---RTK-PISDITDFAW-WSDNILI 305 (849)
Q Consensus 236 afS---PDG~~LAs~s--~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~---~~~-~~~~v~~vaw-s~D~~la 305 (849)
..- |.....++++ ..+.|.+|++.++.+ +..++...+.+......|. ++. ....+. -++ ...+-+.
T Consensus 1245 ~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~---~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~-~~~~~~~~~~l 1320 (1431)
T KOG1240|consen 1245 WLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR---QTVLWASDGAPILSYALPSNDARKPDSLAGIS-CGVCEKNGFLL 1320 (1431)
T ss_pred EeeccCCCCceEEEecccCCCceeeeecccCcc---eEEEEcCCCCcchhhhcccccCCCCCccccee-eecccCCceee
Confidence 544 4445555555 478999999999854 4444333222221111111 111 111111 112 1234477
Q ss_pred EEEeCCcEEEEEecCCccc
Q 003087 306 LARKSSIITMIDVLSGLKV 324 (849)
Q Consensus 306 ~a~~dgti~lwdl~~~~~l 324 (849)
+|+.|+.|+.||...-...
T Consensus 1321 tggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1321 TGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred ecCCccceeeccCCCcccc
Confidence 8899999999999877654
No 225
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=2.5e-08 Score=104.29 Aligned_cols=203 Identities=14% Similarity=0.198 Sum_probs=137.8
Q ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEE
Q 003087 55 GASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIE 134 (849)
Q Consensus 55 ~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~ 134 (849)
+.-.+..||+-|.+||+|..||.|-+||.+...+.+...+|. .+|.++++|+++.. +.+.|.|..+.+||
T Consensus 24 ~~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~---~pi~sl~WS~dgr~-------LltsS~D~si~lwD 93 (405)
T KOG1273|consen 24 PLAECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHV---RPITSLCWSRDGRK-------LLTSSRDWSIKLWD 93 (405)
T ss_pred CccceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccc---cceeEEEecCCCCE-------eeeecCCceeEEEe
Confidence 346799999999999999999999999998766666666553 68999999886643 44558999999999
Q ss_pred ecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceec
Q 003087 135 ISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTT 214 (849)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~ 214 (849)
+..|.....+ .++..|+.+.|||..+-.+++.--.. .. .+=++..+. ..+...
T Consensus 94 l~~gs~l~ri-------------rf~spv~~~q~hp~k~n~~va~~~~~---------sp---~vi~~s~~~--h~~Lp~ 146 (405)
T KOG1273|consen 94 LLKGSPLKRI-------------RFDSPVWGAQWHPRKRNKCVATIMEE---------SP---VVIDFSDPK--HSVLPK 146 (405)
T ss_pred ccCCCceeEE-------------EccCccceeeeccccCCeEEEEEecC---------Cc---EEEEecCCc--eeeccC
Confidence 9887754322 24567999999997776665543320 01 112222110 111111
Q ss_pred cccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcE
Q 003087 215 QIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDIT 294 (849)
Q Consensus 215 ~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~ 294 (849)
..+|-+. ..-....|-+-|+++.+|..-|.+.+.+..+..+ +..+.. + ....|.
T Consensus 147 d~d~dln--------~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~-vas~ri------------t-----s~~~IK 200 (405)
T KOG1273|consen 147 DDDGDLN--------SSASHGVFDRRGKYIITGTSKGKLLVYDAETLEC-VASFRI------------T-----SVQAIK 200 (405)
T ss_pred CCccccc--------cccccccccCCCCEEEEecCcceEEEEecchhee-eeeeee------------c-----hheeee
Confidence 1111110 0112347899999999999999999999998765 444431 1 123467
Q ss_pred EEEEecCCE-EEEEEeCCcEEEEEecC
Q 003087 295 DFAWWSDNI-LILARKSSIITMIDVLS 320 (849)
Q Consensus 295 ~vaws~D~~-la~a~~dgti~lwdl~~ 320 (849)
.|-++.-|. +++-..|..||.+++..
T Consensus 201 ~I~~s~~g~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 201 QIIVSRKGRFLIINTSDRVIRTYEISD 227 (405)
T ss_pred EEEEeccCcEEEEecCCceEEEEehhh
Confidence 788877765 77788999999999873
No 226
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=98.97 E-value=8.7e-09 Score=108.24 Aligned_cols=127 Identities=7% Similarity=-0.000 Sum_probs=94.1
Q ss_pred cccCcccccceEEEEEcCCCC----eEEEEeC-CeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCC-CEEEEEeCCC
Q 003087 3 LYRQPRKTKKQVSLFISPRGE----RVAVAAV-NQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESH-DVLGIVDDTH 76 (849)
Q Consensus 3 ~~~~~~~~~~v~slafSPdG~----~LAsas~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG-~~LAs~~~dg 76 (849)
.|..|-+-..-+.++|+=|-. +||+|+. |.|+|.|.... +..+.+..+ ...|..+.|.|+. ++|.|||.|.
T Consensus 82 ~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~--~~~~~~~gh-G~sINeik~~p~~~qlvls~SkD~ 158 (385)
T KOG1034|consen 82 SYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG--QCSKNYRGH-GGSINEIKFHPDRPQLVLSASKDH 158 (385)
T ss_pred eccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh--hhccceecc-CccchhhhcCCCCCcEEEEecCCc
Confidence 455566667778888877655 5777764 78999987642 333444432 5678999999976 7888999999
Q ss_pred cEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCC
Q 003087 77 TVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDP 139 (849)
Q Consensus 77 tIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~ 139 (849)
+||+||+....+.-+.++-.++...|.++.|+.++.. +++++.|.++++|.+....
T Consensus 159 svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~-------i~ScGmDhslk~W~l~~~~ 214 (385)
T KOG1034|consen 159 SVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDR-------IASCGMDHSLKLWRLNVKE 214 (385)
T ss_pred eEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCe-------eeccCCcceEEEEecChhH
Confidence 9999999865555555555556678999999987654 4556999999999998543
No 227
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.96 E-value=4.2e-08 Score=101.64 Aligned_cols=204 Identities=8% Similarity=0.100 Sum_probs=136.4
Q ss_pred cceEEEEEcCCCC-----eEEEEeCCeEEEEecCCCCCcceeee-----e-ecCCCCEEEEEECC-CCCEEEEEeCCCcE
Q 003087 11 KKQVSLFISPRGE-----RVAVAAVNQVTILQKDDDYQEPCGIF-----N-CTGLGASIYGAWSE-SHDVLGIVDDTHTV 78 (849)
Q Consensus 11 ~~v~slafSPdG~-----~LAsas~~~i~iw~~~~~~~~~~~~~-----~-~~~~~~v~~vafSP-DG~~LAs~~~dgtI 78 (849)
=.++.+-|.||.+ +||+. ++..+||...++........ . .+..+.+++..|.. |-++|.+.|-|-|-
T Consensus 97 YP~tK~~wiPd~~g~~pdlLATs-~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTC 175 (364)
T KOG0290|consen 97 YPVTKLMWIPDSKGVYPDLLATS-SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTC 175 (364)
T ss_pred CCccceEecCCccccCcchhhcc-cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeE
Confidence 3577889999984 67764 57899998764322211111 1 11256788999985 88999999999999
Q ss_pred EEEecCCc----cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcc-cccccccCCcc
Q 003087 79 YFFKANGE----EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSAS-ISSASASSSGL 153 (849)
Q Consensus 79 rlWd~~g~----~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~-~~~~~~~~~~~ 153 (849)
.|||+..+ ..+++-. +...|..|+|..++. ..|+++|.||.||++|+..-.... +|+..
T Consensus 176 TiWdie~~~~~~vkTQLIA----HDKEV~DIaf~~~s~------~~FASvgaDGSvRmFDLR~leHSTIIYE~p------ 239 (364)
T KOG0290|consen 176 TIWDIETGVSGTVKTQLIA----HDKEVYDIAFLKGSR------DVFASVGADGSVRMFDLRSLEHSTIIYEDP------ 239 (364)
T ss_pred EEEEEeeccccceeeEEEe----cCcceeEEEeccCcc------ceEEEecCCCcEEEEEecccccceEEecCC------
Confidence 99999632 1223322 235799999976332 258899999999999997533221 23300
Q ss_pred eeccccCCceEEEEEcC-CCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCcccccc
Q 003087 154 TLRRQFPQNVICTDYHP-ELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAH 232 (849)
Q Consensus 154 ~l~~~~~~~V~svafsP-dg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V 232 (849)
........++|++ |-+++|+-..|. +.|.+-|+.-.. .++. ...+ |+..|
T Consensus 240 ----~~~~pLlRLswnkqDpnymATf~~dS------------~~V~iLDiR~P~--tpva---------~L~~--H~a~V 290 (364)
T KOG0290|consen 240 ----SPSTPLLRLSWNKQDPNYMATFAMDS------------NKVVILDIRVPC--TPVA---------RLRN--HQASV 290 (364)
T ss_pred ----CCCCcceeeccCcCCchHHhhhhcCC------------ceEEEEEecCCC--ccee---------hhhc--Ccccc
Confidence 1122466777776 456777665553 236677765431 1121 2345 89999
Q ss_pred ceEEEccCC-CEEEEEeCCCcEEEEecCC
Q 003087 233 PKVLISPQG-KFVATSDTNGCLYIFEMDK 260 (849)
Q Consensus 233 ~~vafSPDG-~~LAs~s~Dgtv~LWd~~~ 260 (849)
+.++|.|.. ..|+|+|.|-.+-|||++.
T Consensus 291 NgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 291 NGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred cceEecCCCCceeeecCCcceEEEEeccc
Confidence 999999976 5699999999999999985
No 228
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=3.4e-08 Score=104.46 Aligned_cols=196 Identities=14% Similarity=0.113 Sum_probs=125.3
Q ss_pred CeEEEE-eCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECC--CCCEEEEEeCCCcEEEEecCC-ccceecccccccc
Q 003087 23 ERVAVA-AVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSE--SHDVLGIVDDTHTVYFFKANG-EEITRFTNKHLKV 98 (849)
Q Consensus 23 ~~LAsa-s~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSP--DG~~LAs~~~dgtIrlWd~~g-~~~~~l~~~~~~~ 98 (849)
..+|++ |.++|+|+++.. +...+.|.. ..+.+..++|+- .+..+.||+.||+||+||+.. .+..++...+..
T Consensus 41 ~~vav~lSngsv~lyd~~t--g~~l~~fk~-~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~- 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT--GQLLEEFKG-PPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS- 116 (376)
T ss_pred eeEEEEecCCeEEEEeccc--hhhhheecC-CCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC-
Confidence 346666 678999999764 344555542 145667889987 578888999999999999862 233333322110
Q ss_pred cccEEEEEecC-Cc-ccccccceeEEEEeCCCcEEEEEecCCCC-c-ccccccccCCcceeccccCCceEEEEEcCC-Cc
Q 003087 99 SLPIIGLIAQD-ET-DVQRSCLCSFTVFTSDGFLHQIEISQDPS-A-SISSASASSSGLTLRRQFPQNVICTDYHPE-LS 173 (849)
Q Consensus 99 ~~~V~~l~fs~-~~-~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~-~-~~~~~~~~~~~~~l~~~~~~~V~svafsPd-g~ 173 (849)
+.+..+++..- +. ...++ -....|..|.+||+..... . .+.+ -|...|++|.|||. -.
T Consensus 117 ~~~f~~ld~nck~~ii~~Gt-----E~~~s~A~v~lwDvR~~qq~l~~~~e------------SH~DDVT~lrFHP~~pn 179 (376)
T KOG1188|consen 117 GTPFICLDLNCKKNIIACGT-----ELTRSDASVVLWDVRSEQQLLRQLNE------------SHNDDVTQLRFHPSDPN 179 (376)
T ss_pred CCcceEeeccCcCCeEEecc-----ccccCceEEEEEEeccccchhhhhhh------------hccCcceeEEecCCCCC
Confidence 12344444321 11 11111 1114677899999976443 2 2222 23457999999995 55
Q ss_pred eEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCC-CEEEEEeCCCc
Q 003087 174 LLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQG-KFVATSDTNGC 252 (849)
Q Consensus 174 lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG-~~LAs~s~Dgt 252 (849)
+|++||.|+ .|.++|+....+-..|.. .+ . |...|.++.|+-+| +.|-+.+..++
T Consensus 180 lLlSGSvDG-------------LvnlfD~~~d~EeDaL~~-----vi----N--~~sSI~~igw~~~~ykrI~clTH~Et 235 (376)
T KOG1188|consen 180 LLLSGSVDG-------------LVNLFDTKKDNEEDALLH-----VI----N--HGSSIHLIGWLSKKYKRIMCLTHMET 235 (376)
T ss_pred eEEeecccc-------------eEEeeecCCCcchhhHHH-----hh----c--ccceeeeeeeecCCcceEEEEEccCc
Confidence 888998886 488999876532122211 11 1 44578899999888 55888999999
Q ss_pred EEEEecCCCcc
Q 003087 253 LYIFEMDKDNF 263 (849)
Q Consensus 253 v~LWd~~~~~~ 263 (849)
..+|++..+.+
T Consensus 236 f~~~ele~~~~ 246 (376)
T KOG1188|consen 236 FAIYELEDGSE 246 (376)
T ss_pred eeEEEccCCCh
Confidence 99999997643
No 229
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.92 E-value=4.9e-09 Score=107.22 Aligned_cols=145 Identities=14% Similarity=0.212 Sum_probs=92.0
Q ss_pred EEEEEeCCCcEEEEecC-Cccceeccccc------ccccccEEEEEecC--CcccccccceeEEEEeCCCcEEEEEecCC
Q 003087 68 VLGIVDDTHTVYFFKAN-GEEITRFTNKH------LKVSLPIIGLIAQD--ETDVQRSCLCSFTVFTSDGFLHQIEISQD 138 (849)
Q Consensus 68 ~LAs~~~dgtIrlWd~~-g~~~~~l~~~~------~~~~~~V~~l~fs~--~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~ 138 (849)
+|+.|-.+|.|-+||++ |..+..++... ..+..+|.+|.|.+ ++-..+ +.+-.+..|++...
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisg---------ga~dkl~~~Sl~~s 237 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISG---------GADDKLVMYSLNHS 237 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCC---------Cccccceeeeeccc
Confidence 35577789999999997 43333332211 11234677888754 222222 23334555555432
Q ss_pred --CCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccc
Q 003087 139 --PSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQI 216 (849)
Q Consensus 139 --~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~ 216 (849)
..+--. ..+++ ++ +|+.+..-||++.+|++|+|+. ||++.-.+. .++.-
T Consensus 238 ~gslq~~~-------e~~lk--np-Gv~gvrIRpD~KIlATAGWD~R-------------iRVyswrtl---~pLAV--- 288 (323)
T KOG0322|consen 238 TGSLQIRK-------EITLK--NP-GVSGVRIRPDGKILATAGWDHR-------------IRVYSWRTL---NPLAV--- 288 (323)
T ss_pred cCcccccc-------eEEec--CC-CccceEEccCCcEEeecccCCc-------------EEEEEeccC---Cchhh---
Confidence 211100 01121 22 6999999999999999999973 666544442 22221
Q ss_pred cceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEec
Q 003087 217 EGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEM 258 (849)
Q Consensus 217 ~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~ 258 (849)
.+- |.++|.+||||||..++|++|.|++|.||++
T Consensus 289 ------Lky--Hsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 289 ------LKY--HSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ------hhh--hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 122 8889999999999999999999999999986
No 230
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.89 E-value=1.1e-06 Score=98.50 Aligned_cols=261 Identities=16% Similarity=0.151 Sum_probs=146.6
Q ss_pred ceEEEEEcCCCCeEEEEeC-----CeEEEEecCCCCCcc--eeeeeecCCCCEEEEEECCCCCEEEEEeC-CCcEEEEec
Q 003087 12 KQVSLFISPRGERVAVAAV-----NQVTILQKDDDYQEP--CGIFNCTGLGASIYGAWSESHDVLGIVDD-THTVYFFKA 83 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas~-----~~i~iw~~~~~~~~~--~~~~~~~~~~~v~~vafSPDG~~LAs~~~-dgtIrlWd~ 83 (849)
...-|++||++++|-++.. +.|..+....+.+.+ +..... ....-+.++++|||++|.++.. +|+|.++++
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~-~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS-GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE-SSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc-CCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 3456899999999977642 478777665432222 222211 2344578999999999999974 899999998
Q ss_pred C--Ccccee--ccccc-------ccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCC-cccccccccCC
Q 003087 84 N--GEEITR--FTNKH-------LKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPS-ASISSASASSS 151 (849)
Q Consensus 84 ~--g~~~~~--l~~~~-------~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~-~~~~~~~~~~~ 151 (849)
. |..... +..+. .........+.|+|++..... .--....|.++++..+.. .....
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v------~dlG~D~v~~~~~~~~~~~l~~~~------ 184 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV------PDLGADRVYVYDIDDDTGKLTPVD------ 184 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE------EETTTTEEEEEEE-TTS-TEEEEE------
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE------EecCCCEEEEEEEeCCCceEEEee------
Confidence 6 432111 11100 011245678899887643221 112334688888876441 11000
Q ss_pred cceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCc-CcccceeccccceeeccCCCcccc
Q 003087 152 GLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNL-ELEQLYTTQIEGLYCEPKGHEVQL 230 (849)
Q Consensus 152 ~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~-~~~~l~~~~~~~~~~~~~g~~h~~ 230 (849)
.+.-....+-..++|||||+.+.+..... ..|..+++.... .++.+ +...++ +.+.....
T Consensus 185 --~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s------------~~v~v~~~~~~~g~~~~~---~~~~~~--~~~~~~~~ 245 (345)
T PF10282_consen 185 --SIKVPPGSGPRHLAFSPDGKYAYVVNELS------------NTVSVFDYDPSDGSLTEI---QTISTL--PEGFTGEN 245 (345)
T ss_dssp --EEECSTTSSEEEEEE-TTSSEEEEEETTT------------TEEEEEEEETTTTEEEEE---EEEESC--ETTSCSSS
T ss_pred --ccccccCCCCcEEEEcCCcCEEEEecCCC------------CcEEEEeecccCCceeEE---EEeeec--cccccccC
Confidence 11111123578999999999998886554 247788877321 11111 110111 01111223
Q ss_pred ccceEEEccCCCEEEEEe-CCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEE
Q 003087 231 AHPKVLISPQGKFVATSD-TNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILAR 308 (849)
Q Consensus 231 ~V~~vafSPDG~~LAs~s-~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~ 308 (849)
....|++||||++|.++. .+++|.+++++...-.+..... +.. ....+.+++++|||+ |+++.
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~-----------~~~----~G~~Pr~~~~s~~g~~l~Va~ 310 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT-----------VPT----GGKFPRHFAFSPDGRYLYVAN 310 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE-----------EEE----SSSSEEEEEE-TTSSEEEEEE
T ss_pred CceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE-----------EeC----CCCCccEEEEeCCCCEEEEEe
Confidence 567899999999988765 5789999999432111222110 000 012378999999997 44554
Q ss_pred -eCCcEEEEEec
Q 003087 309 -KSSIITMIDVL 319 (849)
Q Consensus 309 -~dgti~lwdl~ 319 (849)
.+++|.++++.
T Consensus 311 ~~s~~v~vf~~d 322 (345)
T PF10282_consen 311 QDSNTVSVFDID 322 (345)
T ss_dssp TTTTEEEEEEEE
T ss_pred cCCCeEEEEEEe
Confidence 67799999885
No 231
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.88 E-value=3.6e-08 Score=109.29 Aligned_cols=229 Identities=14% Similarity=0.137 Sum_probs=130.8
Q ss_pred ccccceEEEEEcCCCCeEEEEeCC-eEEEEecCCCCCcceeeeeecCCCCEEEEEECC--CCCEEEEEeCCCcEEEEecC
Q 003087 8 RKTKKQVSLFISPRGERVAVAAVN-QVTILQKDDDYQEPCGIFNCTGLGASIYGAWSE--SHDVLGIVDDTHTVYFFKAN 84 (849)
Q Consensus 8 ~~~~~v~slafSPdG~~LAsas~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSP--DG~~LAs~~~dgtIrlWd~~ 84 (849)
.+.+-|+.|.|+.||.+||||||+ .+.|||... .+++.....+|...|.++.|=| +.++++||..|.-|||+|++
T Consensus 48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~--~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~ 125 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFE--YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLD 125 (758)
T ss_pred cccceecceeecCCCCEEeecCCcceEEeecchh--cceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecc
Confidence 355889999999999999999976 689999652 2333322223477899999998 57889999999999999997
Q ss_pred C-cc---------ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCC-cccccccccCCcc
Q 003087 85 G-EE---------ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPS-ASISSASASSSGL 153 (849)
Q Consensus 85 g-~~---------~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~-~~~~~~~~~~~~~ 153 (849)
. ++ -...-.-| ...|-.++..|++- ..|-+++.||++|-+|+..... ..... ......
T Consensus 126 ~~~~~~~d~~~~~~~~~~~ch---t~rVKria~~p~~P------htfwsasEDGtirQyDiREph~c~p~~~--~~~~l~ 194 (758)
T KOG1310|consen 126 SSKEGGMDHGMEETTRCWSCH---TDRVKRIATAPNGP------HTFWSASEDGTIRQYDIREPHVCNPDED--CPSILV 194 (758)
T ss_pred cccccccccCccchhhhhhhh---hhhhhheecCCCCC------ceEEEecCCcceeeecccCCccCCcccc--ccHHHH
Confidence 2 11 00000001 12344455444330 2355569999999999975321 11000 000001
Q ss_pred eeccccCCceEEEEEcCCCc-eEEEEecCCCCccccCCCCCCceeeEEEecCC-----cCcccceecc----ccceee--
Q 003087 154 TLRRQFPQNVICTDYHPELS-LLSVVSNTDTSSLTSSGNSGPCCISLWRRCHN-----LELEQLYTTQ----IEGLYC-- 221 (849)
Q Consensus 154 ~l~~~~~~~V~svafsPdg~-lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~-----~~~~~l~~~~----~~~~~~-- 221 (849)
.+-.+. -...|++.||... +||+||++.- .+++|..-. .+...-..+. +...|.
T Consensus 195 ny~~~l-ielk~ltisp~rp~~laVGgsdpf-------------arLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~ 260 (758)
T KOG1310|consen 195 NYNPQL-IELKCLTISPSRPYYLAVGGSDPF-------------ARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPG 260 (758)
T ss_pred Hhchhh-heeeeeeecCCCCceEEecCCCch-------------hhhhhhhhhccCCCCCccccCCCCcccchhheecCc
Confidence 111111 1468999999655 6788888863 456652100 0000000000 001110
Q ss_pred ---ccCC-Ccc-ccccceEEEccCCCEEEEEeCCCcEEEEecCCCcc
Q 003087 222 ---EPKG-HEV-QLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNF 263 (849)
Q Consensus 222 ---~~~g-~~h-~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~ 263 (849)
...| ..+ ...+.-+.|||+|.-|...=...-|.|+|+..++.
T Consensus 261 hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 261 HLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred cccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence 0001 000 01256789999998766554556799999987643
No 232
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=2.9e-08 Score=111.11 Aligned_cols=202 Identities=16% Similarity=0.205 Sum_probs=136.1
Q ss_pred cceEEEEEcCCCCeEEEEeC----CeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCc
Q 003087 11 KKQVSLFISPRGERVAVAAV----NQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGE 86 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~----~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~ 86 (849)
+.|.+|.|.-+|.|||+... ..|.|-++.... ....|. ...+.+..+.|.|---+|.+|.. ..||++|+..+
T Consensus 522 k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~--sQ~PF~-kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kq 597 (733)
T KOG0650|consen 522 KSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK--SQSPFR-KSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQ 597 (733)
T ss_pred CccceeeeecCCceEEEeccCCCcceEEEEeccccc--ccCchh-hcCCceeEEEecCCCceEEEEec-cceEEEehhHH
Confidence 66899999999999999852 367777654321 111122 12567899999999999998887 57999999743
Q ss_pred c-ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEE
Q 003087 87 E-ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVIC 165 (849)
Q Consensus 87 ~-~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~s 165 (849)
+ +..+. .....|.+++.+|.+. .++++++|+.+.-+|+...... + +++. +|...|.+
T Consensus 598 elvKkL~----tg~kwiS~msihp~GD-------nli~gs~d~k~~WfDldlsskP--y--------k~lr-~H~~avr~ 655 (733)
T KOG0650|consen 598 ELVKKLL----TGSKWISSMSIHPNGD-------NLILGSYDKKMCWFDLDLSSKP--Y--------KTLR-LHEKAVRS 655 (733)
T ss_pred HHHHHHh----cCCeeeeeeeecCCCC-------eEEEecCCCeeEEEEcccCcch--h--------HHhh-hhhhhhhh
Confidence 3 32332 2235688899888554 2566789999999998753221 1 1233 67788999
Q ss_pred EEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCc-c-cceeccccceeeccCCCc--cccccceEEEccCC
Q 003087 166 TDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLEL-E-QLYTTQIEGLYCEPKGHE--VQLAHPKVLISPQG 241 (849)
Q Consensus 166 vafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~-~-~l~~~~~~~~~~~~~g~~--h~~~V~~vafSPDG 241 (849)
|+||+.-.++|||+.|+| +.++.-.--.++ + ++. -.+....|+. ...+|-.+.|.|.-
T Consensus 656 Va~H~ryPLfas~sdDgt-------------v~Vfhg~VY~Dl~qnpli-----VPlK~L~gH~~~~~~gVLd~~wHP~q 717 (733)
T KOG0650|consen 656 VAFHKRYPLFASGSDDGT-------------VIVFHGMVYNDLLQNPLI-----VPLKRLRGHEKTNDLGVLDTIWHPRQ 717 (733)
T ss_pred hhhccccceeeeecCCCc-------------EEEEeeeeehhhhcCCce-----EeeeeccCceeecccceEeecccCCC
Confidence 999999999999988875 334432111111 0 111 0111223310 12468888999999
Q ss_pred CEEEEEeCCCcEEEE
Q 003087 242 KFVATSDTNGCLYIF 256 (849)
Q Consensus 242 ~~LAs~s~Dgtv~LW 256 (849)
-+|.|++.||+|+||
T Consensus 718 pWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 718 PWLFSAGADGTIRLF 732 (733)
T ss_pred ceEEecCCCceEEee
Confidence 999999999999999
No 233
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.87 E-value=5e-07 Score=101.73 Aligned_cols=266 Identities=13% Similarity=0.149 Sum_probs=132.0
Q ss_pred EEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEe-CCCcEEEEecC-Ccccee
Q 003087 14 VSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVD-DTHTVYFFKAN-GEEITR 90 (849)
Q Consensus 14 ~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~-~dgtIrlWd~~-g~~~~~ 90 (849)
..++|||||+++.+++ |+.|.++|.... +...+... ...-..+++||||++++++. .+++|.++|.. .+.+.+
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~--~~v~~i~~--G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~ 115 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATG--KVVATIKV--GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKT 115 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSS--SEEEEEE---SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEE
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcc--cEEEEEec--CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceee
Confidence 4578999999998887 789999997643 34444432 23457899999999999776 68999999986 555555
Q ss_pred ccccccc---ccccEEEEEecCCcccccccceeEEEE-eCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEE
Q 003087 91 FTNKHLK---VSLPIIGLIAQDETDVQRSCLCSFTVF-TSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT 166 (849)
Q Consensus 91 l~~~~~~---~~~~V~~l~fs~~~~~~~s~~~~~~~~-s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv 166 (849)
+...... ..+.+.+|..+|... .|++. -..|.|-+-|.+....... ..+. ....-...
T Consensus 116 I~~~~~~~~~~~~Rv~aIv~s~~~~-------~fVv~lkd~~~I~vVdy~d~~~~~~---------~~i~--~g~~~~D~ 177 (369)
T PF02239_consen 116 IPTGGMPVDGPESRVAAIVASPGRP-------EFVVNLKDTGEIWVVDYSDPKNLKV---------TTIK--VGRFPHDG 177 (369)
T ss_dssp EE--EE-TTTS---EEEEEE-SSSS-------EEEEEETTTTEEEEEETTTSSCEEE---------EEEE----TTEEEE
T ss_pred cccccccccccCCCceeEEecCCCC-------EEEEEEccCCeEEEEEeccccccce---------eeec--cccccccc
Confidence 5433211 124566777666432 12222 2336565555443322111 0111 11235678
Q ss_pred EEcCCCceEEEEecCCCCccccC-CCCCCceeeE-----------------------EEecCCcCcc-cceeccccc---
Q 003087 167 DYHPELSLLSVVSNTDTSSLTSS-GNSGPCCISL-----------------------WRRCHNLELE-QLYTTQIEG--- 218 (849)
Q Consensus 167 afsPdg~lLas~g~d~t~~~~~~-~~~G~~~I~l-----------------------W~~~~~~~~~-~l~~~~~~~--- 218 (849)
.|+|+|++++++..... ++..+ .+.+. .+.+ |...+..... .........
T Consensus 178 ~~dpdgry~~va~~~sn-~i~viD~~~~k-~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d 255 (369)
T PF02239_consen 178 GFDPDGRYFLVAANGSN-KIAVIDTKTGK-LVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHD 255 (369)
T ss_dssp EE-TTSSEEEEEEGGGT-EEEEEETTTTE-EEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-ST
T ss_pred ccCcccceeeecccccc-eeEEEeeccce-EEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccch
Confidence 99999998877644321 22111 11111 1122 2221110000 000000000
Q ss_pred -----eeeccCCCccccccceEEEccCCCEEEEE----eCCCcEEEEecCCCcccccccccccccccccccccCCCCCCC
Q 003087 219 -----LYCEPKGHEVQLAHPKVLISPQGKFVATS----DTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKP 289 (849)
Q Consensus 219 -----~~~~~~g~~h~~~V~~vafSPDG~~LAs~----s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 289 (849)
.....+. ...+ .-+.-+||+++|... ...++|.++|..+... ..++... .
T Consensus 256 ~~~wkvv~~I~~--~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~-~~~i~~~-----------------~ 314 (369)
T PF02239_consen 256 DYAWKVVKTIPT--QGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKV-VKTITPG-----------------P 314 (369)
T ss_dssp TTBTSEEEEEE---SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEE-EE-HHHH-----------------H
T ss_pred hhcCeEEEEEEC--CCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcce-eEEEecc-----------------C
Confidence 0000000 1123 466779999999988 4568999999998643 2333211 0
Q ss_pred CCCcEEEEEecCCE--EEEEE-eCCcEEEEEecCCccc
Q 003087 290 ISDITDFAWWSDNI--LILAR-KSSIITMIDVLSGLKV 324 (849)
Q Consensus 290 ~~~v~~vaws~D~~--la~a~-~dgti~lwdl~~~~~l 324 (849)
...+..+.|++||. .++.. .+|.|.|+|..|.+.+
T Consensus 315 ~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~ 352 (369)
T PF02239_consen 315 GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEK 352 (369)
T ss_dssp T--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred CCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEE
Confidence 12378899999996 33433 4448999999998744
No 234
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.84 E-value=9.8e-07 Score=98.78 Aligned_cols=215 Identities=13% Similarity=0.158 Sum_probs=124.2
Q ss_pred cceEEEEEcCCCCeEEEEe--CCeEEEEecCCCCCcceee---ee--e-------cCCCCEEEEEECCCCCEEEEEeC-C
Q 003087 11 KKQVSLFISPRGERVAVAA--VNQVTILQKDDDYQEPCGI---FN--C-------TGLGASIYGAWSESHDVLGIVDD-T 75 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas--~~~i~iw~~~~~~~~~~~~---~~--~-------~~~~~v~~vafSPDG~~LAs~~~-d 75 (849)
.....|+++|||++|.++. +++|.+++...+ +.+... .. . +..+...++.|+|||++|.+.+. .
T Consensus 87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~-g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~ 165 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDD-GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA 165 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT
T ss_pred CCcEEEEEecCCCEEEEEEccCCeEEEEEccCC-cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC
Confidence 4457899999999999995 578999887653 222211 11 0 11456789999999999887653 4
Q ss_pred CcEEEEecCCcc--ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEec--CCCCcccccccccCC
Q 003087 76 HTVYFFKANGEE--ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEIS--QDPSASISSASASSS 151 (849)
Q Consensus 76 gtIrlWd~~g~~--~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~--~~~~~~~~~~~~~~~ 151 (849)
..|++++++... +.....-......-=+.++|+|++... +.+.-.+++|.++++. .+....... ++..
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~------Yv~~e~s~~v~v~~~~~~~g~~~~~~~--~~~~ 237 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYA------YVVNELSNTVSVFDYDPSDGSLTEIQT--ISTL 237 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEE------EEEETTTTEEEEEEEETTTTEEEEEEE--EESC
T ss_pred CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEE------EEecCCCCcEEEEeecccCCceeEEEE--eeec
Confidence 579999986432 322110001111223568898865421 2233567888888887 232211110 0000
Q ss_pred cceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCc-CcccceeccccceeeccCCCcccc
Q 003087 152 GLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNL-ELEQLYTTQIEGLYCEPKGHEVQL 230 (849)
Q Consensus 152 ~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~-~~~~l~~~~~~~~~~~~~g~~h~~ 230 (849)
...+.+ ......+++||||+.|.++.... ..|.+++++... .+..+. .+.. .| .
T Consensus 238 ~~~~~~--~~~~~~i~ispdg~~lyvsnr~~------------~sI~vf~~d~~~g~l~~~~------~~~~-~G----~ 292 (345)
T PF10282_consen 238 PEGFTG--ENAPAEIAISPDGRFLYVSNRGS------------NSISVFDLDPATGTLTLVQ------TVPT-GG----K 292 (345)
T ss_dssp ETTSCS--SSSEEEEEE-TTSSEEEEEECTT------------TEEEEEEECTTTTTEEEEE------EEEE-SS----S
T ss_pred cccccc--cCCceeEEEecCCCEEEEEeccC------------CEEEEEEEecCCCceEEEE------EEeC-CC----C
Confidence 001111 12578999999999998765442 248899985421 122221 1111 11 2
Q ss_pred ccceEEEccCCCEEEEEe-CCCcEEEEecC
Q 003087 231 AHPKVLISPQGKFVATSD-TNGCLYIFEMD 259 (849)
Q Consensus 231 ~V~~vafSPDG~~LAs~s-~Dgtv~LWd~~ 259 (849)
.-+.++|||||++|+++. .+++|.+|+++
T Consensus 293 ~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 293 FPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp SEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred CccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 356899999999999887 57899999885
No 235
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.80 E-value=1.2e-07 Score=100.17 Aligned_cols=279 Identities=13% Similarity=0.238 Sum_probs=155.0
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCc---ceeeeeecC-----------CCCEEEEEECCCCCE--EEEEe
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQE---PCGIFNCTG-----------LGASIYGAWSESHDV--LGIVD 73 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~---~~~~~~~~~-----------~~~v~~vafSPDG~~--LAs~~ 73 (849)
+-+.+|-|..+|++||+|. +|.|.+......+.. -.+.++.+. ...|..+.|-++|.. .....
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 5578899999999999996 688988853322110 111222110 234678999998753 33456
Q ss_pred CCCcEEEEecCCcccee----cc-----------------cccc------------cccccEEEEEecCCccccccccee
Q 003087 74 DTHTVYFFKANGEEITR----FT-----------------NKHL------------KVSLPIIGLIAQDETDVQRSCLCS 120 (849)
Q Consensus 74 ~dgtIrlWd~~g~~~~~----l~-----------------~~~~------------~~~~~V~~l~fs~~~~~~~s~~~~ 120 (849)
.|.||++|.+.-+.... ++ ++.. .+...|.++.++.|. +
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~--------E 177 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK--------E 177 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc--------c
Confidence 68999999985321111 00 0000 001123344442222 2
Q ss_pred EEEEeCCCcEEEEEecC-CCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeE
Q 003087 121 FTVFTSDGFLHQIEISQ-DPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISL 199 (849)
Q Consensus 121 ~~~~s~Dg~v~lw~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~l 199 (849)
.++...|=.|.+|++.- ++.-.+.. + ++-.+. ....-|++..|||..+.+.+=|+.+ |+ |+|
T Consensus 178 t~lSADdLRINLWnlei~d~sFnIVD--I--KP~nmE-eLteVITsaEFhp~~cn~f~YSSSK----------Gt--IrL 240 (433)
T KOG1354|consen 178 TFLSADDLRINLWNLEIIDQSFNIVD--I--KPANME-ELTEVITSAEFHPHHCNVFVYSSSK----------GT--IRL 240 (433)
T ss_pred eEeeccceeeeeccccccCCceeEEE--c--cccCHH-HHHHHHhhhccCHhHccEEEEecCC----------Cc--EEE
Confidence 23334455677887652 11111100 0 000000 1123589999999998776555543 44 999
Q ss_pred EEecCCc---Ccccce----eccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCccccccccccc
Q 003087 200 WRRCHNL---ELEQLY----TTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGE 272 (849)
Q Consensus 200 W~~~~~~---~~~~l~----~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~ 272 (849)
-|+.... ....++ .+....+|+. -...|..|.||+.|+++.|=+. -+|+|||+.-....+.+++.+.
T Consensus 241 cDmR~~aLCd~hsKlfEepedp~~rsffse-----iIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~ 314 (433)
T KOG1354|consen 241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSE-----IISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHE 314 (433)
T ss_pred eechhhhhhcchhhhhccccCCcchhhHHH-----HhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehH
Confidence 9886421 000111 1111122221 2347889999999999987543 6999999965444455665554
Q ss_pred ccccccccccCCCCCCCCCCcEEEEEecCC-EEEEEEeCCcEEEEEecCCcc
Q 003087 273 RFDLQVADSLFDGRTKPISDITDFAWWSDN-ILILARKSSIITMIDVLSGLK 323 (849)
Q Consensus 273 ~~~~~~~~~l~~~~~~~~~~v~~vaws~D~-~la~a~~dgti~lwdl~~~~~ 323 (849)
.....+.+...++ ....=..++|+.++ .+++|+.++..+|+++..|.+
T Consensus 315 ~lr~kLc~lYEnD---~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 315 YLRSKLCSLYEND---AIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred hHHHHHHHHhhcc---chhheeEEEEcCCcceEecccccceEEEecCCCCcc
Confidence 3333333333322 22223568998765 467899999999999877753
No 236
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.78 E-value=1.6e-06 Score=109.75 Aligned_cols=282 Identities=14% Similarity=0.151 Sum_probs=152.5
Q ss_pred cceEEEEEcCCCCeEEEE-e-CCeEEEEecCCCCCcceeeeeecC----------CCCEEEEEECCCCCEEEEEeC-CCc
Q 003087 11 KKQVSLFISPRGERVAVA-A-VNQVTILQKDDDYQEPCGIFNCTG----------LGASIYGAWSESHDVLGIVDD-THT 77 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsa-s-~~~i~iw~~~~~~~~~~~~~~~~~----------~~~v~~vafSPDG~~LAs~~~-dgt 77 (849)
.....|++++++..|.++ + ++.|.+++..+......+.....+ -..-..|+|.|+|..|.+++. ++.
T Consensus 568 ~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 568 KFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHA 647 (1057)
T ss_pred CCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCce
Confidence 445679999865544444 4 468999986532111111100000 012368999999987776664 577
Q ss_pred EEEEecCCccceecccccc-------c-------ccccEEEEEecC-CcccccccceeEEEEeCCCcEEEEEecCCCCcc
Q 003087 78 VYFFKANGEEITRFTNKHL-------K-------VSLPIIGLIAQD-ETDVQRSCLCSFTVFTSDGFLHQIEISQDPSAS 142 (849)
Q Consensus 78 IrlWd~~g~~~~~l~~~~~-------~-------~~~~V~~l~fs~-~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~ 142 (849)
|+++|..++.+.++.+... + ++. =++|+|+| ++.. +++-+.++.|+.|+..++....
T Consensus 648 Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~-P~gVa~dp~~g~L-------yVad~~~~~I~v~d~~~g~v~~ 719 (1057)
T PLN02919 648 LREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNS-PWDVCFEPVNEKV-------YIAMAGQHQIWEYNISDGVTRV 719 (1057)
T ss_pred EEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCC-CeEEEEecCCCeE-------EEEECCCCeEEEEECCCCeEEE
Confidence 9999987766555532100 0 111 13677766 3221 2233567889999876654321
Q ss_pred cccccccCCcceeccc-----cCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceecc--
Q 003087 143 ISSASASSSGLTLRRQ-----FPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQ-- 215 (849)
Q Consensus 143 ~~~~~~~~~~~~l~~~-----~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~-- 215 (849)
+.. . +......++ .-...+.++|+|||+.|+++...+ + .|+.|++.++.. ..+....
T Consensus 720 ~~G-~--G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n----------~--~Irv~D~~tg~~-~~~~gg~~~ 783 (1057)
T PLN02919 720 FSG-D--GYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES----------S--SIRALDLKTGGS-RLLAGGDPT 783 (1057)
T ss_pred Eec-C--CccccCCCCccccccccCccEEEEeCCCCEEEEEECCC----------C--eEEEEECCCCcE-EEEEecccc
Confidence 100 0 000000000 001357899999999776665443 1 388888765310 0000000
Q ss_pred -ccceee--ccCCC---ccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCC
Q 003087 216 -IEGLYC--EPKGH---EVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKP 289 (849)
Q Consensus 216 -~~~~~~--~~~g~---~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 289 (849)
...++. ...|. .....-..|+|+|||++.++-..+++|++||..++.. .++...+...+. +... ....
T Consensus 784 ~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v--~tiaG~G~~G~~--dG~~--~~a~ 857 (1057)
T PLN02919 784 FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRV--TTLAGTGKAGFK--DGKA--LKAQ 857 (1057)
T ss_pred cCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeE--EEEeccCCcCCC--CCcc--cccc
Confidence 000000 00000 0011234799999999999999999999999987632 333321111110 0000 0123
Q ss_pred CCCcEEEEEecCCEEEEE-EeCCcEEEEEecCCc
Q 003087 290 ISDITDFAWWSDNILILA-RKSSIITMIDVLSGL 322 (849)
Q Consensus 290 ~~~v~~vaws~D~~la~a-~~dgti~lwdl~~~~ 322 (849)
...+..|++++||.+.++ +.++.|++||+.+++
T Consensus 858 l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 858 LSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred cCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 346788999999987665 577899999998875
No 237
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.74 E-value=1.1e-06 Score=98.51 Aligned_cols=249 Identities=14% Similarity=0.179 Sum_probs=156.2
Q ss_pred ceEEEEEcCCCCeE-EEEeC-CeEEEEecCCCCCcceeeeeec-CCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccc
Q 003087 12 KQVSLFISPRGERV-AVAAV-NQVTILQKDDDYQEPCGIFNCT-GLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEI 88 (849)
Q Consensus 12 ~v~slafSPdG~~L-Asas~-~~i~iw~~~~~~~~~~~~~~~~-~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~ 88 (849)
.-+.+..||||+|+ |+|-. -+|++++... ...+|..+ +...|.-.-.|-|-.-++---.|.+|-+=.--|.-
T Consensus 53 ast~ik~s~DGqY~lAtG~YKP~ikvydlan----LSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h- 127 (703)
T KOG2321|consen 53 ASTRIKVSPDGQYLLATGTYKPQIKVYDLAN----LSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH- 127 (703)
T ss_pred ccceeEecCCCcEEEEecccCCceEEEEccc----ceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCee-
Confidence 44678999999988 55545 4899999652 22344422 25566777788888888888888888754333432
Q ss_pred eecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEE
Q 003087 89 TRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDY 168 (849)
Q Consensus 89 ~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svaf 168 (849)
.++.-. ..-..+.++ .+++ -+++++....|.-.++.+|..++-++ .. ...+++|..
T Consensus 128 y~~RIP-----~~GRDm~y~-----~~sc--Dly~~gsg~evYRlNLEqGrfL~P~~---------~~---~~~lN~v~i 183 (703)
T KOG2321|consen 128 YRTRIP-----KFGRDMKYH-----KPSC--DLYLVGSGSEVYRLNLEQGRFLNPFE---------TD---SGELNVVSI 183 (703)
T ss_pred eeeecC-----cCCcccccc-----CCCc--cEEEeecCcceEEEEccccccccccc---------cc---cccceeeee
Confidence 222110 111233332 1233 36666666678888998888755433 11 236999999
Q ss_pred cCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEe
Q 003087 169 HPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSD 248 (849)
Q Consensus 169 sPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s 248 (849)
+|-+.+||+|+.++ .|..||.....-...+-.. ..+..+.|.-....|.+++|+-||-.+|.|.
T Consensus 184 n~~hgLla~Gt~~g-------------~VEfwDpR~ksrv~~l~~~---~~v~s~pg~~~~~svTal~F~d~gL~~aVGt 247 (703)
T KOG2321|consen 184 NEEHGLLACGTEDG-------------VVEFWDPRDKSRVGTLDAA---SSVNSHPGGDAAPSVTALKFRDDGLHVAVGT 247 (703)
T ss_pred cCccceEEecccCc-------------eEEEecchhhhhheeeecc---cccCCCccccccCcceEEEecCCceeEEeec
Confidence 99999999888776 3889987654211111000 0000111211234699999999999999999
Q ss_pred CCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecC-CE-EEEEEeCCcEEEEEecCCcc
Q 003087 249 TNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSD-NI-LILARKSSIITMIDVLSGLK 323 (849)
Q Consensus 249 ~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D-~~-la~a~~dgti~lwdl~~~~~ 323 (849)
.+|.|.|+|+...+..+.+ +| ...-++..+.|-+. ++ .++......++|||-.+|+.
T Consensus 248 s~G~v~iyDLRa~~pl~~k-------dh-----------~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~ 306 (703)
T KOG2321|consen 248 STGSVLIYDLRASKPLLVK-------DH-----------GYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKP 306 (703)
T ss_pred cCCcEEEEEcccCCceeec-------cc-----------CCccceeeecccccCCCceEEecchHHhhhcccccCCc
Confidence 9999999999876542111 01 11235777888653 33 33444456899999999984
No 238
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.74 E-value=2.3e-06 Score=94.90 Aligned_cols=244 Identities=11% Similarity=0.038 Sum_probs=133.1
Q ss_pred EcCCCCeEEEEeC-----------CeEEEEecCCCCCcceeeeeecC------CCCEEEEEECCCCCEEEEEe-C-CCcE
Q 003087 18 ISPRGERVAVAAV-----------NQVTILQKDDDYQEPCGIFNCTG------LGASIYGAWSESHDVLGIVD-D-THTV 78 (849)
Q Consensus 18 fSPdG~~LAsas~-----------~~i~iw~~~~~~~~~~~~~~~~~------~~~v~~vafSPDG~~LAs~~-~-dgtI 78 (849)
+||||+.|.++.. +.|.+||..+ .++.+...... ...-...++||||++|.++. . +..|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t--~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V 130 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT--HLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAV 130 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECcc--CcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEE
Confidence 9999999977743 6899999764 34444443211 11224799999999999776 4 7899
Q ss_pred EEEecC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceecc
Q 003087 79 YFFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRR 157 (849)
Q Consensus 79 rlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~ 157 (849)
-++|+. ++.+..+.-. ....-...+++ .+.+.+.||......+...+....-. ..-|.+
T Consensus 131 ~VvD~~~~kvv~ei~vp-----~~~~vy~t~e~---------~~~~~~~Dg~~~~v~~d~~g~~~~~~------~~vf~~ 190 (352)
T TIGR02658 131 GVVDLEGKAFVRMMDVP-----DCYHIFPTAND---------TFFMHCRDGSLAKVGYGTKGNPKIKP------TEVFHP 190 (352)
T ss_pred EEEECCCCcEEEEEeCC-----CCcEEEEecCC---------ccEEEeecCceEEEEecCCCceEEee------eeeecC
Confidence 999997 5555444321 11111111221 23334556655554443322211000 000111
Q ss_pred cc-CCceEEEEEcC-CCceEEEEecCCCCccccCCCCCCceeeEEEecCCc--Ccccceecccc---ceeeccCCCcccc
Q 003087 158 QF-PQNVICTDYHP-ELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNL--ELEQLYTTQIE---GLYCEPKGHEVQL 230 (849)
Q Consensus 158 ~~-~~~V~svafsP-dg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~--~~~~l~~~~~~---~~~~~~~g~~h~~ 230 (849)
.. +-+.+- .|+| ||+++.+.. .++ |.+-|+.+.. ....+...... .-+ .-.
T Consensus 191 ~~~~v~~rP-~~~~~dg~~~~vs~-eG~-------------V~~id~~~~~~~~~~~~~~~~~~~~~~~w-------rP~ 248 (352)
T TIGR02658 191 EDEYLINHP-AYSNKSGRLVWPTY-TGK-------------IFQIDLSSGDAKFLPAIEAFTEAEKADGW-------RPG 248 (352)
T ss_pred CccccccCC-ceEcCCCcEEEEec-CCe-------------EEEEecCCCcceecceeeecccccccccc-------CCC
Confidence 00 000111 5677 888886643 353 4444433210 00000000000 001 112
Q ss_pred ccceEEEccCCCEEEEEeC----------CCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEec
Q 003087 231 AHPKVLISPQGKFVATSDT----------NGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWS 300 (849)
Q Consensus 231 ~V~~vafSPDG~~LAs~s~----------Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~ 300 (849)
++.-++++|||+.|..+.. .+.|.++|..+.+. +..++. ...++.|+++|
T Consensus 249 g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv-i~~i~v-------------------G~~~~~iavS~ 308 (352)
T TIGR02658 249 GWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR-LRKIEL-------------------GHEIDSINVSQ 308 (352)
T ss_pred cceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeE-EEEEeC-------------------CCceeeEEECC
Confidence 3344999999999998532 24788888887754 333331 13578899999
Q ss_pred CCE-EE-EEE-eCCcEEEEEecCCcccc
Q 003087 301 DNI-LI-LAR-KSSIITMIDVLSGLKVK 325 (849)
Q Consensus 301 D~~-la-~a~-~dgti~lwdl~~~~~l~ 325 (849)
|++ ++ ++. .+|+|.+.|+.+++.+-
T Consensus 309 Dgkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 309 DAKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred CCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 998 44 343 67899999999987554
No 239
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.73 E-value=5.8e-07 Score=106.44 Aligned_cols=248 Identities=13% Similarity=0.159 Sum_probs=150.8
Q ss_pred CCCeEEEEe-CCeEEEEecC-CC--CCcceeeee-ec----C-CCCEEEEEECCCCCEEEEEeCCCcEEEEecCCcc-ce
Q 003087 21 RGERVAVAA-VNQVTILQKD-DD--YQEPCGIFN-CT----G-LGASIYGAWSESHDVLGIVDDTHTVYFFKANGEE-IT 89 (849)
Q Consensus 21 dG~~LAsas-~~~i~iw~~~-~~--~~~~~~~~~-~~----~-~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~-~~ 89 (849)
|..+|.+|+ ||.|+||+.- +. ..+...-+. .. + .+.-.-+.|--....|.++++-..|||||+.-+. +.
T Consensus 1122 D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~ 1201 (1387)
T KOG1517|consen 1122 DDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVA 1201 (1387)
T ss_pred chhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEe
Confidence 445667776 7899999632 21 111111121 11 1 1111567898877777777778999999998554 33
Q ss_pred ecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCC--ceEEEE
Q 003087 90 RFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQ--NVICTD 167 (849)
Q Consensus 90 ~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~V~sva 167 (849)
.++-+ -+..|.++. ++... + +.++.+-.||.||+||.......+... ..+ .|.. +|..+.
T Consensus 1202 diP~~---s~t~vTaLS--~~~~~-g---n~i~AGfaDGsvRvyD~R~a~~ds~v~--------~~R-~h~~~~~Iv~~s 1263 (1387)
T KOG1517|consen 1202 DIPYG---SSTLVTALS--ADLVH-G---NIIAAGFADGSVRVYDRRMAPPDSLVC--------VYR-EHNDVEPIVHLS 1263 (1387)
T ss_pred ecccC---CCccceeec--ccccC-C---ceEEEeecCCceEEeecccCCccccce--------eec-ccCCcccceeEE
Confidence 44322 123444443 21111 1 235556689999999987644321110 011 3333 399999
Q ss_pred EcCCCce-EEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEE
Q 003087 168 YHPELSL-LSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVAT 246 (849)
Q Consensus 168 fsPdg~l-Las~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs 246 (849)
+-+.|-- |++|+.+| .|++||+... ..+.+.+.. .+.. -...+.++...++..++||
T Consensus 1264 lq~~G~~elvSgs~~G-------------~I~~~DlR~~-~~e~~~~iv------~~~~--yGs~lTal~VH~hapiiAs 1321 (1387)
T KOG1517|consen 1264 LQRQGLGELVSGSQDG-------------DIQLLDLRMS-SKETFLTIV------AHWE--YGSALTALTVHEHAPIIAS 1321 (1387)
T ss_pred eecCCCcceeeeccCC-------------eEEEEecccC-cccccceee------eccc--cCccceeeeeccCCCeeee
Confidence 9887665 77888775 2999998764 222221110 1110 0124789999999999999
Q ss_pred EeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecCCc
Q 003087 247 SDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVLSGL 322 (849)
Q Consensus 247 ~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~~ 322 (849)
|+. +.|+||++.+.+ +..+.... .+. +...+.+.+.+|.|-.. +|+|+.|.+|.||.....+
T Consensus 1322 Gs~-q~ikIy~~~G~~--l~~~k~n~--~F~---------~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1322 GSA-QLIKIYSLSGEQ--LNIIKYNP--GFM---------GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cCc-ceEEEEecChhh--hcccccCc--ccc---------cCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 999 999999999873 44544221 111 12234578899999764 6788899999999876544
No 240
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.73 E-value=1.2e-06 Score=88.90 Aligned_cols=205 Identities=9% Similarity=0.020 Sum_probs=135.3
Q ss_pred ccceEEEEEcCCCCeEEEEeCCeEEEEecCCCCC----cceeeee-e--cC---CCCEEEEEECCCCCEEEEEeCCCcEE
Q 003087 10 TKKQVSLFISPRGERVAVAAVNQVTILQKDDDYQ----EPCGIFN-C--TG---LGASIYGAWSESHDVLGIVDDTHTVY 79 (849)
Q Consensus 10 ~~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~----~~~~~~~-~--~~---~~~v~~vafSPDG~~LAs~~~dgtIr 79 (849)
-+.|+.++|. -..|.+|+|+.|+=|-+..... ++.-... + .+ -+.|+++-.-|...-|..|+.|+.++
T Consensus 62 dgpiy~~~f~--d~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y 139 (325)
T KOG0649|consen 62 DGPIYYLAFH--DDFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIY 139 (325)
T ss_pred CCCeeeeeee--hhheeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEE
Confidence 3789999998 4577788999999875542110 1110000 1 11 46788999999888888888999999
Q ss_pred EEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceecccc
Q 003087 80 FFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQF 159 (849)
Q Consensus 80 lWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (849)
-||+....+.+..++|. ..|.+|+-.. ...++.+++.||++|+||..+++..++++.. .+.-.++-+.
T Consensus 140 ~~dlE~G~i~r~~rGHt---DYvH~vv~R~-------~~~qilsG~EDGtvRvWd~kt~k~v~~ie~y--k~~~~lRp~~ 207 (325)
T KOG0649|consen 140 QVDLEDGRIQREYRGHT---DYVHSVVGRN-------ANGQILSGAEDGTVRVWDTKTQKHVSMIEPY--KNPNLLRPDW 207 (325)
T ss_pred EEEecCCEEEEEEcCCc---ceeeeeeecc-------cCcceeecCCCccEEEEeccccceeEEeccc--cChhhcCccc
Confidence 99998444444444443 4677777411 1225777799999999999999887776611 0111123233
Q ss_pred CCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEcc
Q 003087 160 PQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISP 239 (849)
Q Consensus 160 ~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSP 239 (849)
...|.+++-+.| .|+.||.-+ +.+|++.++.... + | ..++ .|.-|-|
T Consensus 208 g~wigala~~ed--WlvCGgGp~--------------lslwhLrsse~t~-v--------f-pipa-----~v~~v~F-- 254 (325)
T KOG0649|consen 208 GKWIGALAVNED--WLVCGGGPK--------------LSLWHLRSSESTC-V--------F-PIPA-----RVHLVDF-- 254 (325)
T ss_pred CceeEEEeccCc--eEEecCCCc--------------eeEEeccCCCceE-E--------E-eccc-----ceeEeee--
Confidence 446888887654 777666554 7899988753211 1 1 1122 4567888
Q ss_pred CCCEEEEEeCCCcEEEEecCCC
Q 003087 240 QGKFVATSDTNGCLYIFEMDKD 261 (849)
Q Consensus 240 DG~~LAs~s~Dgtv~LWd~~~~ 261 (849)
+...+.+++..+.|.-|.+.+-
T Consensus 255 ~~d~vl~~G~g~~v~~~~l~Gv 276 (325)
T KOG0649|consen 255 VDDCVLIGGEGNHVQSYTLNGV 276 (325)
T ss_pred ecceEEEeccccceeeeeeccE
Confidence 7888888998999999988764
No 241
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.66 E-value=6e-07 Score=98.85 Aligned_cols=268 Identities=12% Similarity=0.122 Sum_probs=164.1
Q ss_pred cccccceEEEEEcCCCCeEEEEeCC-eEEEEecCCCCCcceeeeeecCCCCEEEEEECC--CCCEEEEEeCCCcEEEEec
Q 003087 7 PRKTKKQVSLFISPRGERVAVAAVN-QVTILQKDDDYQEPCGIFNCTGLGASIYGAWSE--SHDVLGIVDDTHTVYFFKA 83 (849)
Q Consensus 7 ~~~~~~v~slafSPdG~~LAsas~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSP--DG~~LAs~~~dgtIrlWd~ 83 (849)
-+|-+-|..|.|...|..|+++||+ +|.+|++..+ .+...+...|...|-.-.|=| +.+.|++.+.||.||+=.+
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~--~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i 216 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSG--SPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI 216 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhcc--CcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence 4566899999999999999999975 8999998753 333344433344554445655 5678999999999998765
Q ss_pred C--Cccc--eecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceecccc
Q 003087 84 N--GEEI--TRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQF 159 (849)
Q Consensus 84 ~--g~~~--~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (849)
. |... .++.+| ..+|.-++..|+.- +.|.+++.||.+.-.|++++.....+. +-. ..
T Consensus 217 ~~t~~~e~t~rl~~h----~g~vhklav~p~sp------~~f~S~geD~~v~~~Dlr~~~pa~~~~--------cr~-~~ 277 (559)
T KOG1334|consen 217 LETGYVENTKRLAPH----EGPVHKLAVEPDSP------KPFLSCGEDAVVFHIDLRQDVPAEKFV--------CRE-AD 277 (559)
T ss_pred ccccceecceecccc----cCccceeeecCCCC------CcccccccccceeeeeeccCCccceee--------eec-cC
Confidence 3 4322 223233 35677777666331 247788999999999998765432211 111 12
Q ss_pred CC---ceEEEEEcCCCc-eEEEEecCCCCccccCCCCCCceeeEEEecCCc----Cc--ccceeccccceeeccCCCccc
Q 003087 160 PQ---NVICTDYHPELS-LLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNL----EL--EQLYTTQIEGLYCEPKGHEVQ 229 (849)
Q Consensus 160 ~~---~V~svafsPdg~-lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~----~~--~~l~~~~~~~~~~~~~g~~h~ 229 (849)
+. ..++++..|-.. .+|++|.|.- +++++...-. +. ..+. +. .+.. . ..
T Consensus 278 ~~~~v~L~~Ia~~P~nt~~faVgG~dqf-------------~RvYD~R~~~~e~~n~~~~~f~-p~--hl~~---d--~~ 336 (559)
T KOG1334|consen 278 EKERVGLYTIAVDPRNTNEFAVGGSDQF-------------ARVYDQRRIDKEENNGVLDKFC-PH--HLVE---D--DP 336 (559)
T ss_pred CccceeeeeEecCCCCccccccCChhhh-------------hhhhcccchhhccccchhhhcC-Cc--cccc---c--Cc
Confidence 22 578999999776 7889888863 4555532210 00 0000 00 0000 0 12
Q ss_pred cccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccc--cccccccccccCCCCCCCC--CCcEEEEEec--CCE
Q 003087 230 LAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACG--ERFDLQVADSLFDGRTKPI--SDITDFAWWS--DNI 303 (849)
Q Consensus 230 ~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~--~~~~~~~~~~l~~~~~~~~--~~v~~vaws~--D~~ 303 (849)
-.|++++||.+|.=|.++-.|--|.|+.-.-+.-+ ...+.. .+...+++ ++|. ..|..|.||- ...
T Consensus 337 v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~-~p~~~s~~~~~~k~vY-------KGHrN~~TVKgVNFfGPrsEy 408 (559)
T KOG1334|consen 337 VNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS-EPDPSSPREQYVKRVY-------KGHRNSRTVKGVNFFGPRSEY 408 (559)
T ss_pred ccceeEEecCCccceeeeecccceEEeccccccCC-CCCCCcchhhccchhh-------cccccccccceeeeccCccce
Confidence 36899999977666555667888899833311000 000000 01111111 2332 2488899985 556
Q ss_pred EEEEEeCCcEEEEEecCCccc
Q 003087 304 LILARKSSIITMIDVLSGLKV 324 (849)
Q Consensus 304 la~a~~dgti~lwdl~~~~~l 324 (849)
+++|+.-|.|-||+-.+++.+
T Consensus 409 VvSGSDCGhIFiW~K~t~eii 429 (559)
T KOG1334|consen 409 VVSGSDCGHIFIWDKKTGEII 429 (559)
T ss_pred EEecCccceEEEEecchhHHH
Confidence 889999999999999998854
No 242
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=5e-07 Score=96.67 Aligned_cols=212 Identities=12% Similarity=0.095 Sum_probs=139.3
Q ss_pred CCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccceec------ccccccccccEEEEEecCCcccccccceeEEEEeC
Q 003087 53 GLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRF------TNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTS 126 (849)
Q Consensus 53 ~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~l------~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~ 126 (849)
+.+-|..+.||-+|++||||++|..++||++..-...+. ..++ +.+.|.+++|.-... .+++++.
T Consensus 55 H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~--H~SNIF~L~F~~~N~-------~~~SG~~ 125 (609)
T KOG4227|consen 55 HTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHP--HRSNIFSLEFDLENR-------FLYSGER 125 (609)
T ss_pred hccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCc--cccceEEEEEccCCe-------eEecCCC
Confidence 366789999999999999999999999999853222221 1221 235689999954322 2556689
Q ss_pred CCcEEEEEecCCCCcccccccccCCcceecccc--CCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecC
Q 003087 127 DGFLHQIEISQDPSASISSASASSSGLTLRRQF--PQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCH 204 (849)
Q Consensus 127 Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~ 204 (849)
+|+|.+-|+.+....-++. +. ...|+.+.-||-.+.||+++.++ .|.+||...
T Consensus 126 ~~~VI~HDiEt~qsi~V~~------------~~~~~~~VY~m~~~P~DN~~~~~t~~~-------------~V~~~D~Rd 180 (609)
T KOG4227|consen 126 WGTVIKHDIETKQSIYVAN------------ENNNRGDVYHMDQHPTDNTLIVVTRAK-------------LVSFIDNRD 180 (609)
T ss_pred cceeEeeecccceeeeeec------------ccCcccceeecccCCCCceEEEEecCc-------------eEEEEeccC
Confidence 9999999998755432221 21 12699999999999999988776 388999876
Q ss_pred Cc-CcccceeccccceeeccCCCccccccceEEEccCC-CEEEEEeCCCcEEEEecCCCccccccccccccccccccccc
Q 003087 205 NL-ELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQG-KFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSL 282 (849)
Q Consensus 205 ~~-~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG-~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l 282 (849)
.. .++++.-.. ....-+++-|.|-- .+||+++.-|-+-+||+.....++-+... ...|
T Consensus 181 ~~~~~~~~~~AN------------~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~--------~~~L 240 (609)
T KOG4227|consen 181 RQNPISLVLPAN------------SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSM--------FKGL 240 (609)
T ss_pred CCCCCceeeecC------------CCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhc--------cccC
Confidence 54 333332211 11345688899865 67889999999999999876443333221 0011
Q ss_pred CCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecCCc
Q 003087 283 FDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVLSGL 322 (849)
Q Consensus 283 ~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~~ 322 (849)
..+ . ..-.++-|+|.|. +++.+....-.++|+-+.+
T Consensus 241 ~~~---~-~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R 277 (609)
T KOG4227|consen 241 PQE---N-TEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR 277 (609)
T ss_pred ccc---c-hhhhheeeCCCCCeehhhhccCCCEEeeeeccc
Confidence 110 0 1124678998774 5555555556678887765
No 243
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.63 E-value=5e-07 Score=107.37 Aligned_cols=200 Identities=11% Similarity=0.050 Sum_probs=135.2
Q ss_pred CEEEEEECCCCCEEEEEeCCCcEEEEecCCcc-ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEE
Q 003087 56 ASIYGAWSESHDVLGIVDDTHTVYFFKANGEE-ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIE 134 (849)
Q Consensus 56 ~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~-~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~ 134 (849)
.+..-.+.-+.+.+|.+..++.+-+||..+.. ...+.....-.-.+..-+.++++ .++++.++.-|.|.+|+
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~-------~~~i~~gsv~~~iivW~ 161 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAE-------ELYIASGSVFGEIIVWK 161 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCc-------EEEEEeccccccEEEEe
Confidence 33445667788999999999999999987543 33332211000011111222221 13556667888999999
Q ss_pred ecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceec
Q 003087 135 ISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTT 214 (849)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~ 214 (849)
...+.... .+. +|.+.|.++.||-||++++++|.|.+ +|+|.+++...+. .
T Consensus 162 ~~~dn~p~-----------~l~-GHeG~iF~i~~s~dg~~i~s~SdDRs-------------iRlW~i~s~~~~~---~- 212 (967)
T KOG0974|consen 162 PHEDNKPI-----------RLK-GHEGSIFSIVTSLDGRYIASVSDDRS-------------IRLWPIDSREVLG---C- 212 (967)
T ss_pred ccccCCcc-----------eec-ccCCceEEEEEccCCcEEEEEecCcc-------------eeeeecccccccC---c-
Confidence 76322211 234 45678999999999999999999974 8999998753211 0
Q ss_pred cccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcE
Q 003087 215 QIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDIT 294 (849)
Q Consensus 215 ~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~ 294 (849)
.. -| |...|+.+.|.|. .++|++.|-|.++|+....+ +..+.. | ....++
T Consensus 213 ---~~----fg--HsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~--l~~y~~-----h------------~g~~iw 262 (967)
T KOG0974|consen 213 ---TG----FG--HSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQ--LEVYDE-----H------------SGKGIW 262 (967)
T ss_pred ---cc----cc--ccceeEEEEeccc--eeEEeccceEEEEEecccce--ehhhhh-----h------------hhccee
Confidence 11 13 8999999999998 99999999999999887653 233321 1 123478
Q ss_pred EEEEecCCEE-EEEEeCCcEEEEEecCC
Q 003087 295 DFAWWSDNIL-ILARKSSIITMIDVLSG 321 (849)
Q Consensus 295 ~vaws~D~~l-a~a~~dgti~lwdl~~~ 321 (849)
.++-.++..+ +++..||++++|++.+.
T Consensus 263 ~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 263 KIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred EEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 8888777764 56789999999998764
No 244
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.62 E-value=6.6e-07 Score=106.00 Aligned_cols=208 Identities=10% Similarity=0.131 Sum_probs=127.7
Q ss_pred EEEcCCCCeEEEEeC-CeEEEEecCCCCCcceeeeeecCCCCEEEEEE-CCCCCEEEEEeCCCcEEEEecCC---cccee
Q 003087 16 LFISPRGERVAVAAV-NQVTILQKDDDYQEPCGIFNCTGLGASIYGAW-SESHDVLGIVDDTHTVYFFKANG---EEITR 90 (849)
Q Consensus 16 lafSPdG~~LAsas~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vaf-SPDG~~LAs~~~dgtIrlWd~~g---~~~~~ 90 (849)
+.|-....+|.+++| ..|+|||.+.. ..+.....+...-++++.= .+.|.++|.|-.||.||++|..- +....
T Consensus 1171 ~dWqQ~~G~Ll~tGd~r~IRIWDa~~E--~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~ 1248 (1387)
T KOG1517|consen 1171 VDWQQQSGHLLVTGDVRSIRIWDAHKE--QVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVC 1248 (1387)
T ss_pred eehhhhCCeEEecCCeeEEEEEecccc--eeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccce
Confidence 444444444444444 68999997632 1111111111334554432 34589999999999999999741 11222
Q ss_pred cccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcC
Q 003087 91 FTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHP 170 (849)
Q Consensus 91 l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsP 170 (849)
..+.|... .+|..+.+.+.+.. ++++++.||.|++||+.......+.. + ..++ .+....+++..|+
T Consensus 1249 ~~R~h~~~-~~Iv~~slq~~G~~------elvSgs~~G~I~~~DlR~~~~e~~~~--i-v~~~----~yGs~lTal~VH~ 1314 (1387)
T KOG1517|consen 1249 VYREHNDV-EPIVHLSLQRQGLG------ELVSGSQDGDIQLLDLRMSSKETFLT--I-VAHW----EYGSALTALTVHE 1314 (1387)
T ss_pred eecccCCc-ccceeEEeecCCCc------ceeeeccCCeEEEEecccCcccccce--e-eecc----ccCccceeeeecc
Confidence 22333221 12778887664432 47777999999999998643322221 0 0011 1222489999999
Q ss_pred CCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCC
Q 003087 171 ELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTN 250 (849)
Q Consensus 171 dg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~D 250 (849)
+..++|+|+. + .|++|+..+.. +..+... .+++....| .+.+++|.|---+||.|+.|
T Consensus 1315 hapiiAsGs~-q-------------~ikIy~~~G~~-l~~~k~n--~~F~~q~~g-----s~scL~FHP~~~llAaG~~D 1372 (1387)
T KOG1517|consen 1315 HAPIIASGSA-Q-------------LIKIYSLSGEQ-LNIIKYN--PGFMGQRIG-----SVSCLAFHPHRLLLAAGSAD 1372 (1387)
T ss_pred CCCeeeecCc-c-------------eEEEEecChhh-hcccccC--cccccCcCC-----CcceeeecchhHhhhhccCC
Confidence 9999998876 3 28999987741 1111100 122222233 66899999999999999999
Q ss_pred CcEEEEecCCC
Q 003087 251 GCLYIFEMDKD 261 (849)
Q Consensus 251 gtv~LWd~~~~ 261 (849)
.+|.|+..++.
T Consensus 1373 s~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1373 STVSIYSCEKP 1383 (1387)
T ss_pred ceEEEeecCCc
Confidence 99999988765
No 245
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.62 E-value=4.3e-07 Score=96.21 Aligned_cols=239 Identities=14% Similarity=0.132 Sum_probs=137.7
Q ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEEecCC--c-c---ceeccccccccc--------ccEEEEEecCCcccccccce
Q 003087 54 LGASIYGAWSESHDVLGIVDDTHTVYFFKANG--E-E---ITRFTNKHLKVS--------LPIIGLIAQDETDVQRSCLC 119 (849)
Q Consensus 54 ~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g--~-~---~~~l~~~~~~~~--------~~V~~l~fs~~~~~~~s~~~ 119 (849)
..-+.+|-|.-+|.+||+|+.+|.|-++.-+. + + ......|..++. -.|..+.+-+++.. .
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~-----a 99 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNL-----A 99 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCc-----c
Confidence 45568999999999999999999999986531 1 1 112222222211 23445555433221 2
Q ss_pred eEEEEeCCCcEEEEEecCCCCcc-c--------------cc-ccccC-------C-cceeccccCCceEEEEEcCCCceE
Q 003087 120 SFTVFTSDGFLHQIEISQDPSAS-I--------------SS-ASASS-------S-GLTLRRQFPQNVICTDYHPELSLL 175 (849)
Q Consensus 120 ~~~~~s~Dg~v~lw~~~~~~~~~-~--------------~~-~~~~~-------~-~~~l~~~~~~~V~svafsPdg~lL 175 (849)
+|.+.+.|.+|++|.++...... - +. ..... . ...+...|+-.|+++.++.|+..+
T Consensus 100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~ 179 (433)
T KOG1354|consen 100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETF 179 (433)
T ss_pred EEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceE
Confidence 58888999999999997532211 0 00 00000 0 012333455579999999999999
Q ss_pred EEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccC-CCEEEEEeCCCcEE
Q 003087 176 SVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQ-GKFVATSDTNGCLY 254 (849)
Q Consensus 176 as~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPD-G~~LAs~s~Dgtv~ 254 (849)
.|+..-+ |.||++.-...-=.|.+.....+ .. -+--|.+.-|+|. .+.++-.+..|+|+
T Consensus 180 lSADdLR--------------INLWnlei~d~sFnIVDIKP~nm----Ee--LteVITsaEFhp~~cn~f~YSSSKGtIr 239 (433)
T KOG1354|consen 180 LSADDLR--------------INLWNLEIIDQSFNIVDIKPANM----EE--LTEVITSAEFHPHHCNVFVYSSSKGTIR 239 (433)
T ss_pred eecccee--------------eeeccccccCCceeEEEccccCH----HH--HHHHHhhhccCHhHccEEEEecCCCcEE
Confidence 8764332 78998754321111221110000 00 1224667788885 45677788899999
Q ss_pred EEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecC
Q 003087 255 IFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLS 320 (849)
Q Consensus 255 LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~ 320 (849)
|=|+.........-..-+..+.++...+.. +-...|.||-|++.|++++++.=-+|+|||+..
T Consensus 240 LcDmR~~aLCd~hsKlfEepedp~~rsffs---eiIsSISDvKFs~sGryilsRDyltvk~wD~nm 302 (433)
T KOG1354|consen 240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFS---EIISSISDVKFSHSGRYILSRDYLTVKLWDLNM 302 (433)
T ss_pred EeechhhhhhcchhhhhccccCCcchhhHH---HHhhhhhceEEccCCcEEEEeccceeEEEeccc
Confidence 999974321111111111111111111111 123468899999999999998889999999953
No 246
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.61 E-value=9.2e-07 Score=98.36 Aligned_cols=238 Identities=10% Similarity=0.082 Sum_probs=139.6
Q ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEEecCC-ccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEE
Q 003087 54 LGASIYGAWSESHDVLGIVDDTHTVYFFKANG-EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQ 132 (849)
Q Consensus 54 ~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g-~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~l 132 (849)
.+=|.+++|+.||.+|||||+|-.+-|||... +.+..+..+|. ..|.++.|-|-. .+..++++..|..|++
T Consensus 50 ~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHt---aNIFsvKFvP~t-----nnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 50 TGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHT---ANIFSVKFVPYT-----NNRIVLSGAGDKLIKL 121 (758)
T ss_pred cceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccc---cceeEEeeeccC-----CCeEEEeccCcceEEE
Confidence 67789999999999999999999999999873 44555544443 468999997722 1224667789999999
Q ss_pred EEecCCCCcccccccccCCcceeccccCCceEEEEEcCCC-ceEEEEecCCCCccccCCCCCCceeeEEEecCCcCccc-
Q 003087 133 IEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPEL-SLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQ- 210 (849)
Q Consensus 133 w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg-~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~- 210 (849)
+|++.-+....-..+. .....++ -|...|.-++--|+| ..+-|+|.|+| |+-.|+.....-.+
T Consensus 122 fdl~~~~~~~~d~~~~-~~~~~~~-cht~rVKria~~p~~PhtfwsasEDGt-------------irQyDiREph~c~p~ 186 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGME-ETTRCWS-CHTDRVKRIATAPNGPHTFWSASEDGT-------------IRQYDIREPHVCNPD 186 (758)
T ss_pred EecccccccccccCcc-chhhhhh-hhhhhhhheecCCCCCceEEEecCCcc-------------eeeecccCCccCCcc
Confidence 9997422111000000 0011122 345579999999999 77788999975 67777654210000
Q ss_pred ceeccccceeeccCCCccccccceEEEccCC-CEEEEEeCCCcEEEEecCCCccccccccccccccc--c----cccccC
Q 003087 211 LYTTQIEGLYCEPKGHEVQLAHPKVLISPQG-KFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDL--Q----VADSLF 283 (849)
Q Consensus 211 l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG-~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~--~----~~~~l~ 283 (849)
....+ .+....+ .--...++.+||.. .+||.|+.|--.+|+|... .++.++.....-. + -.+-+.
T Consensus 187 ~~~~~---~l~ny~~--~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr---~lks~~s~~~~~~~pp~~~~cv~yf~ 258 (758)
T KOG1310|consen 187 EDCPS---ILVNYNP--QLIELKCLTISPSRPYYLAVGGSDPFARLYDRRR---VLKSFRSDGTMNTCPPKDCRCVRYFS 258 (758)
T ss_pred ccccH---HHHHhch--hhheeeeeeecCCCCceEEecCCCchhhhhhhhh---hccCCCCCccccCCCCcccchhheec
Confidence 00000 0000111 11245689999965 5699999999999999532 2333332111000 0 000111
Q ss_pred CC-----CCCCCC---CcEEEEEecCCEEEEEEeCC-cEEEEEecCCc
Q 003087 284 DG-----RTKPIS---DITDFAWWSDNILILARKSS-IITMIDVLSGL 322 (849)
Q Consensus 284 ~~-----~~~~~~---~v~~vaws~D~~la~a~~dg-ti~lwdl~~~~ 322 (849)
|. ++.-.. -+.-++|+|.|.=++.+.+| -|.++|+..++
T Consensus 259 p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 259 PGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred CccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCC
Confidence 11 110000 13448899998644444444 68899988776
No 247
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.61 E-value=5.1e-07 Score=95.06 Aligned_cols=109 Identities=9% Similarity=0.065 Sum_probs=64.0
Q ss_pred EEECCCCCEEEEEeCCCcEEEEecCCccceecccccccccccEEEEEecCCcccccccce--eEEEEeCCCcEEEEEecC
Q 003087 60 GAWSESHDVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLC--SFTVFTSDGFLHQIEISQ 137 (849)
Q Consensus 60 vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~--~~~~~s~Dg~v~lw~~~~ 137 (849)
-.|||+|+++|+++.- .+-+=|...-++.++..-. ..|..+- |+++. .+-.+..||.|.+|++.+
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cl----dki~yie--------W~ads~~ilC~~yk~~~vqvwsl~Q 80 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCL----DKIVYIE--------WKADSCHILCVAYKDPKVQVWSLVQ 80 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHH----HHhhhee--------eeccceeeeeeeeccceEEEEEeec
Confidence 4799999999999986 4445565543322221110 1222333 33331 233446899999999975
Q ss_pred CCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCC
Q 003087 138 DPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHN 205 (849)
Q Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~ 205 (849)
..--.. +.-+ +.++.++.|||||+.|...+.=+ ..|++|.+++.
T Consensus 81 pew~ck-----------Ideg-~agls~~~WSPdgrhiL~tseF~------------lriTVWSL~t~ 124 (447)
T KOG4497|consen 81 PEWYCK-----------IDEG-QAGLSSISWSPDGRHILLTSEFD------------LRITVWSLNTQ 124 (447)
T ss_pred ceeEEE-----------eccC-CCcceeeeECCCcceEeeeecce------------eEEEEEEeccc
Confidence 432111 1112 34799999999998665544332 13788988763
No 248
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.60 E-value=1.4e-06 Score=104.95 Aligned_cols=215 Identities=15% Similarity=0.141 Sum_probs=118.8
Q ss_pred CCCCEEEEEECCCC-CEEEEEeCCCcEEEEecC---Ccc-cee--cccccccccccEEEEEecCCcccccccceeEEEEe
Q 003087 53 GLGASIYGAWSESH-DVLGIVDDTHTVYFFKAN---GEE-ITR--FTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFT 125 (849)
Q Consensus 53 ~~~~v~~vafSPDG-~~LAs~~~dgtIrlWd~~---g~~-~~~--l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s 125 (849)
|.+.+..+|-|++. .+++|||.|||||+||.. |+. ..+ ++-.. -++.+..+.+-+.+ .+|++++
T Consensus 1047 hs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~--~~sr~~~vt~~~~~-------~~~Av~t 1117 (1431)
T KOG1240|consen 1047 HSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP--EGSRVEKVTMCGNG-------DQFAVST 1117 (1431)
T ss_pred ccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec--cCCceEEEEeccCC-------CeEEEEc
Confidence 45666677776554 999999999999999973 321 000 00000 01233333332211 3588889
Q ss_pred CCCcEEEEEecCCCCccc-ccccccCCcceeccccCCceEEEEEcCCCce-EEEEecCCCCccccCCCCCCceeeEEEec
Q 003087 126 SDGFLHQIEISQDPSASI-SSASASSSGLTLRRQFPQNVICTDYHPELSL-LSVVSNTDTSSLTSSGNSGPCCISLWRRC 203 (849)
Q Consensus 126 ~Dg~v~lw~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~V~svafsPdg~l-Las~g~d~t~~~~~~~~~G~~~I~lW~~~ 203 (849)
.||.|++..+..-..... ..... ...+. ....-|..-+|..+-+. +++.+.+- +.|-.||+.
T Consensus 1118 ~DG~v~~~~id~~~~~~~~~~~~r---i~n~~-~~g~vv~m~a~~~~~~S~~lvy~T~~------------~~iv~~D~r 1181 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVR---IPNLK-KDGVVVSMHAFTAIVQSHVLVYATDL------------SRIVSWDTR 1181 (1431)
T ss_pred CCCeEEEEEccccccccceeeeee---ccccc-CCCceEEeecccccccceeEEEEEec------------cceEEecch
Confidence 999999999875211100 00000 00000 11113566666554333 33333332 237789886
Q ss_pred CCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccC
Q 003087 204 HNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLF 283 (849)
Q Consensus 204 ~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~ 283 (849)
...+...+ +. .+ ..+.|.+++.+|-|+++++|...|.+-+||+.-... +..|.. +
T Consensus 1182 ~~~~~w~l---k~-----~~----~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~-i~sw~~------P------ 1236 (1431)
T KOG1240|consen 1182 MRHDAWRL---KN-----QL----RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVP-ILSWEH------P------ 1236 (1431)
T ss_pred hhhhHHhh---hc-----Cc----cccceeEEEecCCceEEEEecCCceEEEEEeecCce-eecccC------c------
Confidence 54322111 10 00 236899999999999999999999999999986533 344431 0
Q ss_pred CCCCCCCCCcEEEEE---ecC-CEEEEE-E-eCCcEEEEEecCCc
Q 003087 284 DGRTKPISDITDFAW---WSD-NILILA-R-KSSIITMIDVLSGL 322 (849)
Q Consensus 284 ~~~~~~~~~v~~vaw---s~D-~~la~a-~-~dgti~lwdl~~~~ 322 (849)
+..++..+.- .+. .-.+++ + ..+.|.+|++.+|.
T Consensus 1237 -----~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1237 -----ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred -----ccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 1122332222 222 233443 3 57789999999885
No 249
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.54 E-value=5.8e-05 Score=81.38 Aligned_cols=262 Identities=15% Similarity=0.118 Sum_probs=147.6
Q ss_pred cceEEEEEcCCCCeEEEEe----CCeEEEEecCCCCCcc--eeeeeecCCCCEEEEEECCCCCEEEEEeC-CCcEEEEec
Q 003087 11 KKQVSLFISPRGERVAVAA----VNQVTILQKDDDYQEP--CGIFNCTGLGASIYGAWSESHDVLGIVDD-THTVYFFKA 83 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas----~~~i~iw~~~~~~~~~--~~~~~~~~~~~v~~vafSPDG~~LAs~~~-dgtIrlWd~ 83 (849)
+.+.=|+|+||+++|=++- .+.|.-+..++..+.. +......+.+. +.|++++||++|.+|.. .|.|.+.-+
T Consensus 40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p-~yvsvd~~g~~vf~AnY~~g~v~v~p~ 118 (346)
T COG2706 40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPP-CYVSVDEDGRFVFVANYHSGSVSVYPL 118 (346)
T ss_pred CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCC-eEEEECCCCCEEEEEEccCceEEEEEc
Confidence 6677799999999996663 2466655554322222 11112222222 88999999999999985 478888876
Q ss_pred C--Ccccee--cccccc-----c-ccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcc
Q 003087 84 N--GEEITR--FTNKHL-----K-VSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGL 153 (849)
Q Consensus 84 ~--g~~~~~--l~~~~~-----~-~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~ 153 (849)
. |..... ...|.. . ....+....|.|++......+ .+.| .|.++++..|+....-. .
T Consensus 119 ~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~D-----LG~D-ri~~y~~~dg~L~~~~~-------~ 185 (346)
T COG2706 119 QADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPD-----LGTD-RIFLYDLDDGKLTPADP-------A 185 (346)
T ss_pred ccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEee-----cCCc-eEEEEEcccCccccccc-------c
Confidence 3 432111 111110 0 012255666666553322111 1233 36677777555432211 1
Q ss_pred eeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCC-cCcccceeccccceeeccCCCcccccc
Q 003087 154 TLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHN-LELEQLYTTQIEGLYCEPKGHEVQLAH 232 (849)
Q Consensus 154 ~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~-~~~~~l~~~~~~~~~~~~~g~~h~~~V 232 (849)
.++ -..+-.-++|||+|++..+...-. + +|.+|..++. ..++.+ |...+ .+.++.-..+.
T Consensus 186 ~v~--~G~GPRHi~FHpn~k~aY~v~EL~----------s--tV~v~~y~~~~g~~~~l---Q~i~t--lP~dF~g~~~~ 246 (346)
T COG2706 186 EVK--PGAGPRHIVFHPNGKYAYLVNELN----------S--TVDVLEYNPAVGKFEEL---QTIDT--LPEDFTGTNWA 246 (346)
T ss_pred ccC--CCCCcceEEEcCCCcEEEEEeccC----------C--EEEEEEEcCCCceEEEe---eeecc--CccccCCCCce
Confidence 111 123568899999999998887654 2 4888998874 122222 11111 12222234577
Q ss_pred ceEEEccCCCEEEEEeC-CCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEE-e
Q 003087 233 PKVLISPQGKFVATSDT-NGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILAR-K 309 (849)
Q Consensus 233 ~~vafSPDG~~LAs~s~-Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~-~ 309 (849)
-.|.+||||++|.+... ...|-++.+....-.|.... ..+. ....+.++.+.++|. |+++. .
T Consensus 247 aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~------------~~~t---eg~~PR~F~i~~~g~~Liaa~q~ 311 (346)
T COG2706 247 AAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVG------------ITPT---EGQFPRDFNINPSGRFLIAANQK 311 (346)
T ss_pred eEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEE------------Eecc---CCcCCccceeCCCCCEEEEEccC
Confidence 79999999999998753 34777777764421111111 0111 113367889999887 44454 4
Q ss_pred CCcEEEEEecC
Q 003087 310 SSIITMIDVLS 320 (849)
Q Consensus 310 dgti~lwdl~~ 320 (849)
+.+|.++.+..
T Consensus 312 sd~i~vf~~d~ 322 (346)
T COG2706 312 SDNITVFERDK 322 (346)
T ss_pred CCcEEEEEEcC
Confidence 55788888764
No 250
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.53 E-value=1.3e-07 Score=103.43 Aligned_cols=190 Identities=9% Similarity=0.031 Sum_probs=131.5
Q ss_pred cceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cccce
Q 003087 11 KKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEIT 89 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~~ 89 (849)
..|.++.|=.+-+++|+|.-+.+.|+|.. |..+. | .+.+..|..+.|-|-.=+||+++..|-++-=|++ |+.+.
T Consensus 171 Etv~Dv~~LHneq~~AVAQK~y~yvYD~~---GtElH-C-lk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa 245 (545)
T KOG1272|consen 171 ETVRDVTFLHNEQFFAVAQKKYVYVYDNN---GTELH-C-LKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVA 245 (545)
T ss_pred hhhhhhhhhcchHHHHhhhhceEEEecCC---CcEEe-e-hhhcCchhhhcccchhheeeecccCCceEEEeechhhhhH
Confidence 67888999999999999999999999854 22221 2 2235788999999999999999999999999997 87766
Q ss_pred ecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEc
Q 003087 90 RFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYH 169 (849)
Q Consensus 90 ~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafs 169 (849)
.+..+. ..+..+.-+|-..+ +=++..+|+|.+|......... .+. -|..+|++||+.
T Consensus 246 ~~~t~~----G~~~vm~qNP~NaV-------ih~GhsnGtVSlWSP~skePLv-----------KiL-cH~g~V~siAv~ 302 (545)
T KOG1272|consen 246 SIRTGA----GRTDVMKQNPYNAV-------IHLGHSNGTVSLWSPNSKEPLV-----------KIL-CHRGPVSSIAVD 302 (545)
T ss_pred HHHccC----CccchhhcCCccce-------EEEcCCCceEEecCCCCcchHH-----------HHH-hcCCCcceEEEC
Confidence 654433 23333443441111 2234689999999876432211 112 246689999999
Q ss_pred CCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeC
Q 003087 170 PELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDT 249 (849)
Q Consensus 170 Pdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~ 249 (849)
|+|+++|++|-|. .+++||+..-..+..+ +.+ .+...++||.-|-+ | +|.
T Consensus 303 ~~G~YMaTtG~Dr-------------~~kIWDlR~~~ql~t~---------~tp------~~a~~ls~SqkglL-A-~~~ 352 (545)
T KOG1272|consen 303 RGGRYMATTGLDR-------------KVKIWDLRNFYQLHTY---------RTP------HPASNLSLSQKGLL-A-LSY 352 (545)
T ss_pred CCCcEEeeccccc-------------ceeEeeecccccccee---------ecC------CCccccccccccce-e-eec
Confidence 9999999999997 3899998764211111 110 25568999876644 3 456
Q ss_pred CCcEEEEec
Q 003087 250 NGCLYIFEM 258 (849)
Q Consensus 250 Dgtv~LWd~ 258 (849)
..-|.||.=
T Consensus 353 G~~v~iw~d 361 (545)
T KOG1272|consen 353 GDHVQIWKD 361 (545)
T ss_pred CCeeeeehh
Confidence 677999953
No 251
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.53 E-value=6e-07 Score=106.74 Aligned_cols=147 Identities=10% Similarity=0.032 Sum_probs=108.3
Q ss_pred EEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccceeccc
Q 003087 15 SLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRFTN 93 (849)
Q Consensus 15 slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~l~~ 93 (849)
-+.+|++-=++|+|+ -++|.+|.+..+ ..+. .. ..|.+.+-++.||-||+++|++|+|.++|+|++...+... .
T Consensus 138 ~~g~s~~~~~i~~gsv~~~iivW~~~~d-n~p~-~l-~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~ 212 (967)
T KOG0974|consen 138 IIGDSAEELYIASGSVFGEIIVWKPHED-NKPI-RL-KGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--C 212 (967)
T ss_pred EEeccCcEEEEEeccccccEEEEecccc-CCcc-ee-cccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--c
Confidence 366889999999997 589999986522 2222 12 2236788999999999999999999999999997543221 2
Q ss_pred ccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCc
Q 003087 94 KHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELS 173 (849)
Q Consensus 94 ~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~ 173 (849)
+-.+++..|+.+.|.|. .+++++.|-+.++|...... .+.+ .+|....|+.++++++--
T Consensus 213 ~~fgHsaRvw~~~~~~n---------~i~t~gedctcrvW~~~~~~-l~~y-----------~~h~g~~iw~~~~~~~~~ 271 (967)
T KOG0974|consen 213 TGFGHSARVWACCFLPN---------RIITVGEDCTCRVWGVNGTQ-LEVY-----------DEHSGKGIWKIAVPIGVI 271 (967)
T ss_pred ccccccceeEEEEeccc---------eeEEeccceEEEEEecccce-ehhh-----------hhhhhcceeEEEEcCCce
Confidence 23445678999999885 25667899999999654322 2232 245556799999999999
Q ss_pred eEEEEecCCCCccc
Q 003087 174 LLSVVSNTDTSSLT 187 (849)
Q Consensus 174 lLas~g~d~t~~~~ 187 (849)
.++++|.|+++++|
T Consensus 272 ~~vT~g~Ds~lk~~ 285 (967)
T KOG0974|consen 272 IKVTGGNDSTLKLW 285 (967)
T ss_pred EEEeeccCcchhhh
Confidence 99999999865444
No 252
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=0.00041 Score=81.80 Aligned_cols=415 Identities=13% Similarity=0.108 Sum_probs=231.0
Q ss_pred EEECCCCCEEEEEeCCCcEEEEecCCccceecccccccccccEEEEEe--cCCcccccccceeEEEEeCCC-----cEEE
Q 003087 60 GAWSESHDVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIA--QDETDVQRSCLCSFTVFTSDG-----FLHQ 132 (849)
Q Consensus 60 vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~f--s~~~~~~~s~~~~~~~~s~Dg-----~v~l 132 (849)
=.||+.|..+|.|+.+|.|-+.+-.=+.+..+.... ..| +.| ..+.. +-+++.+.|+ .+++
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~----~si--v~~L~~~~~~------~~L~sv~Ed~~~np~llki 96 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYE----QSI--VQFLYILNKQ------NFLFSVGEDEQGNPVLLKI 96 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecccceeeehheecc----hhh--hhHhhcccCc------eEEEEEeecCCCCceEEEE
Confidence 478999999999999998765543322222222211 011 111 11110 0133334443 5899
Q ss_pred EEecCC-CC--cccc-cccccCCcceecc-ccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcC
Q 003087 133 IEISQD-PS--ASIS-SASASSSGLTLRR-QFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLE 207 (849)
Q Consensus 133 w~~~~~-~~--~~~~-~~~~~~~~~~l~~-~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~ 207 (849)
|++..- +. +..+ + ...++.+. ..+.++.+++.|.+-+.+|+|-.+|. |...+ |...
T Consensus 97 w~lek~~~n~sP~c~~~----~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~-------------V~~~~--GDi~ 157 (933)
T KOG2114|consen 97 WDLEKVDKNNSPQCLYE----HRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGL-------------VICYK--GDIL 157 (933)
T ss_pred ecccccCCCCCcceeee----eeeeccCCCCCCCcceEEEEEccccEEEEEecCcE-------------EEEEc--Ccch
Confidence 999753 21 1111 1 00011111 12346899999999888887766652 43332 2110
Q ss_pred cccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCC
Q 003087 208 LEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRT 287 (849)
Q Consensus 208 ~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 287 (849)
-++- + ..-+ .++| ..+|..++|--||+.+.-+.+-..|.++.+.+....++...
T Consensus 158 RDrg-s---r~~~-~~~~---~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld------------------ 211 (933)
T KOG2114|consen 158 RDRG-S---RQDY-SHRG---KEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLD------------------ 211 (933)
T ss_pred hccc-c---ceee-eccC---CCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeec------------------
Confidence 0000 0 0001 1122 35899999999999966667788899999986532111111
Q ss_pred CCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecCCccc--cccCC-----CC-CCeEEEEEecccccccCCCCccc----
Q 003087 288 KPISDITDFAWWSDNI-LILARKSSIITMIDVLSGLKV--KETDP-----KL-RGHVFLLESKSVEERFNVSNYDR---- 354 (849)
Q Consensus 288 ~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~~~l--~~~~~-----~~-~g~~~~Le~~~~~~~~~~~~~~~---- 354 (849)
.+..++...+|++... ++.|+ +..|.+++.++.+.. ++... .+ .|.++.+....+.+..+.++...
T Consensus 212 ~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~~~~~~g~~L~v~~~~~~~~~s~s~ss~~~i~ 290 (933)
T KOG2114|consen 212 NNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEMLVFSFGLLLCVTTDKGTENTSLSNSSSNRIF 290 (933)
T ss_pred cCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEEEEEEecCEEEEEEccCCCCCcccCccchhhee
Confidence 1123455556655433 55554 667889998866533 23222 22 37778777766555433322111
Q ss_pred --ccc-cccchh-hhhhhhh-------ccccceeeEEEEEEeccCCHHHHHHHHHcccCHHHHHHHHHHhCCChhHHHHH
Q 003087 355 --ETV-YSNHTV-QLIEERF-------NRSGNTMLYWSLISFSERSVPEMYNILISHRNYQTAIDFANYHGLDTDEVLKS 423 (849)
Q Consensus 355 --~~~-~~~~~~-~~~~~~~-------~~~~~~~~~~~l~~~~~~tp~e~~~~~i~~~~~~~A~~lA~~~~ld~d~Vyk~ 423 (849)
++. -.+... -+.++.. +-+-+.+..=++.++++.+.++-+..++.+..|.-|+.||...++|.|-+-.-
T Consensus 291 ~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i 370 (933)
T KOG2114|consen 291 KAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEI 370 (933)
T ss_pred ehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHH
Confidence 010 001100 0001111 11122333346778999999999999999999999999999999999987432
Q ss_pred H------HhcCCCCHHHHHHhhhcCC--ChHHHHHHHhhccCCCHHHHHHHHHHHhhccccCCccccCCcccchhhHHHH
Q 003087 424 Q------WLNSSQGTDEINMFLSKIK--DQAFILSECVDKVGRTEDSAKALLAHGLHLTNQYKFSETEDDEYSQIWDYRI 495 (849)
Q Consensus 424 ~------w~~s~~~~~~i~~~L~kI~--D~~wV~~~Cl~~~~~~~~~~~~LL~~gL~~t~~~~~~~~~~~~~~~~~~~~~ 495 (849)
. ...-.-=-++++.|..-|. |..+|...= .+.+-.|+|..|--.....+.... |
T Consensus 371 ~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kf-----Ldaq~IknLt~YLe~L~~~gla~~----------d--- 432 (933)
T KOG2114|consen 371 HRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKF-----LDAQRIKNLTSYLEALHKKGLANS----------D--- 432 (933)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHh-----cCHHHHHHHHHHHHHHHHcccccc----------h---
Confidence 2 1111122456677776654 667777665 457888999988755544433210 1
Q ss_pred HHHHHHHH------HHHHHHHHhhhc-C--CchH--HHHHhhcCcHHHHHHHHHHcCC--cchHHHHH
Q 003087 496 ARLQLLQF------GDRLETYLGINM-G--RYYA--EYSKFRIMPIHEAGVNLAESGK--IGALNLLF 550 (849)
Q Consensus 496 ~r~~ll~~------ldRL~t~~~i~~-~--~f~~--~~~~Fr~~~lv~~A~~~A~~g~--i~aL~~L~ 550 (849)
++..||.. .+.|++|-.... | -||. .+.-.|..+....|..+|..-+ -..|.+|.
T Consensus 433 httlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~ill 500 (933)
T KOG2114|consen 433 HTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKKHEWVLDILL 500 (933)
T ss_pred hHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHHH
Confidence 23344443 356666654332 2 3455 8889999999999999996543 35555555
No 253
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=5.5e-06 Score=89.42 Aligned_cols=208 Identities=9% Similarity=0.088 Sum_probs=134.8
Q ss_pred cceEEEEEcCCCCeEEEEeCCeEEEEecCCCC--CcceeeeeecCCCCEEEEEECCCCCE-EEEEeCC--CcEEEEecCC
Q 003087 11 KKQVSLFISPRGERVAVAAVNQVTILQKDDDY--QEPCGIFNCTGLGASIYGAWSESHDV-LGIVDDT--HTVYFFKANG 85 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~~~i~iw~~~~~~--~~~~~~~~~~~~~~v~~vafSPDG~~-LAs~~~d--gtIrlWd~~g 85 (849)
+.|..++.+ ||.+++..++|.+.+|....+. ..+.-.+.. .+++..|.=+|.... +|+|+.. ..+++||+.+
T Consensus 106 ~~I~gl~~~-dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~--g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~ 182 (412)
T KOG3881|consen 106 KSIKGLKLA-DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLAT--GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQ 182 (412)
T ss_pred ccccchhhc-CCEEEEEecCCcEEEEeccCCccccccceeeec--CCceeeeccCCCCCceEecCchhcccceeeeeccc
Confidence 344444443 7888877788889999765321 112212221 356666777775554 4558777 7899999974
Q ss_pred -ccceeccccc---c--cccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceecccc
Q 003087 86 -EEITRFTNKH---L--KVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQF 159 (849)
Q Consensus 86 -~~~~~l~~~~---~--~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (849)
+++++-.+.. . .+.-++.++.|-++.. ...|++++.-+.+|+||...+.-+ +.. +.+.
T Consensus 183 ~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~-----~~~fat~T~~hqvR~YDt~~qRRP-V~~-------fd~~--- 246 (412)
T KOG3881|consen 183 SKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSP-----NYKFATITRYHQVRLYDTRHQRRP-VAQ-------FDFL--- 246 (412)
T ss_pred ceeeeeccCCCCccccceeeeeeccceecCCCC-----CceEEEEecceeEEEecCcccCcc-eeE-------eccc---
Confidence 4443322111 1 1112345677755322 236999999999999999865432 211 1222
Q ss_pred CCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEcc
Q 003087 160 PQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISP 239 (849)
Q Consensus 160 ~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSP 239 (849)
.++|+++.--|+|+++++|-..+ . +..+|..++.- .|. .++| -.++|.+|--.|
T Consensus 247 E~~is~~~l~p~gn~Iy~gn~~g-----------~--l~~FD~r~~kl---------~g~--~~kg--~tGsirsih~hp 300 (412)
T KOG3881|consen 247 ENPISSTGLTPSGNFIYTGNTKG-----------Q--LAKFDLRGGKL---------LGC--GLKG--ITGSIRSIHCHP 300 (412)
T ss_pred cCcceeeeecCCCcEEEEecccc-----------h--hheecccCcee---------ecc--ccCC--ccCCcceEEEcC
Confidence 45799999999999998875443 2 67777766421 111 1334 456999999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCcc
Q 003087 240 QGKFVATSDTNGCLYIFEMDKDNF 263 (849)
Q Consensus 240 DG~~LAs~s~Dgtv~LWd~~~~~~ 263 (849)
.+++||++|.|.-|||+|+++.++
T Consensus 301 ~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 301 THPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred CCceEEeeccceeEEEeecccchh
Confidence 999999999999999999998644
No 254
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.49 E-value=8.1e-06 Score=93.62 Aligned_cols=202 Identities=9% Similarity=0.042 Sum_probs=107.2
Q ss_pred cceEEEEEcCCCCe-EEEEe-C---CeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEe-CC--CcEEEEe
Q 003087 11 KKQVSLFISPRGER-VAVAA-V---NQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVD-DT--HTVYFFK 82 (849)
Q Consensus 11 ~~v~slafSPdG~~-LAsas-~---~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~-~d--gtIrlWd 82 (849)
+...+-.|||||+. ++..+ . ..|.+++..++ ... .+.. ..+.....+|||||+.||... .+ ..|.++|
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg--~~~-~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTG--KKE-KIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYD 263 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCC--cEE-EEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEE
Confidence 34668999999996 77654 2 24556666443 221 1221 233456788999999888543 33 4577778
Q ss_pred cCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCc--EEEEEecCCCCcccccccccCCcceeccccC
Q 003087 83 ANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGF--LHQIEISQDPSASISSASASSSGLTLRRQFP 160 (849)
Q Consensus 83 ~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~--v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (849)
+.|.....++.... ......|+||+... .++....|. |.++++.++..... ++.+.
T Consensus 264 l~~g~~~~LT~~~~----~d~~p~~SPDG~~I------~F~Sdr~g~~~Iy~~dl~~g~~~rl----------t~~g~-- 321 (419)
T PRK04043 264 TNTKTLTQITNYPG----IDVNGNFVEDDKRI------VFVSDRLGYPNIFMKKLNSGSVEQV----------VFHGK-- 321 (419)
T ss_pred CCCCcEEEcccCCC----ccCccEECCCCCEE------EEEECCCCCceEEEEECCCCCeEeC----------ccCCC--
Confidence 87766666654331 11234577765422 122233444 44455544433221 11111
Q ss_pred CceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccC
Q 003087 161 QNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQ 240 (849)
Q Consensus 161 ~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPD 240 (849)
...+|||||+.||..+..... -...+...|.+-++.++. ...|.. .+ .....+||||
T Consensus 322 ---~~~~~SPDG~~Ia~~~~~~~~----~~~~~~~~I~v~d~~~g~-~~~LT~----------~~-----~~~~p~~SPD 378 (419)
T PRK04043 322 ---NNSSVSTYKNYIVYSSRETNN----EFGKNTFNLYLISTNSDY-IRRLTA----------NG-----VNQFPRFSSD 378 (419)
T ss_pred ---cCceECCCCCEEEEEEcCCCc----ccCCCCcEEEEEECCCCC-eEECCC----------CC-----CcCCeEECCC
Confidence 124899999999877654310 000121224455554431 122211 01 2235889999
Q ss_pred CCEEEEEeCC-Cc--EEEEecCCC
Q 003087 241 GKFVATSDTN-GC--LYIFEMDKD 261 (849)
Q Consensus 241 G~~LAs~s~D-gt--v~LWd~~~~ 261 (849)
|+.|+-.+.+ |. |.+.++++.
T Consensus 379 G~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 379 GGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CCEEEEEEccCCcEEEEEEecCCC
Confidence 9998877653 33 444555543
No 255
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.48 E-value=4e-06 Score=94.78 Aligned_cols=201 Identities=13% Similarity=0.067 Sum_probs=129.1
Q ss_pred ECCCCCEEEEEeCCCcEEEEecC-Cccceecccc-ccccc--ccEEEEEe--cCC-c-----ccccccc-eeEEEEeCCC
Q 003087 62 WSESHDVLGIVDDTHTVYFFKAN-GEEITRFTNK-HLKVS--LPIIGLIA--QDE-T-----DVQRSCL-CSFTVFTSDG 128 (849)
Q Consensus 62 fSPDG~~LAs~~~dgtIrlWd~~-g~~~~~l~~~-~~~~~--~~V~~l~f--s~~-~-----~~~~s~~-~~~~~~s~Dg 128 (849)
++|-+.++|.+..||.+|+|++. ++....+.+. +..-+ ..++++.- +|- . ...++.+ ..++.+++.|
T Consensus 1 ~~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g 80 (541)
T KOG4547|consen 1 SPPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG 80 (541)
T ss_pred CCchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc
Confidence 35678999999999999999986 5443333322 11111 23344332 331 0 0112222 3467778999
Q ss_pred cEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCc
Q 003087 129 FLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLEL 208 (849)
Q Consensus 129 ~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~ 208 (849)
.|.++++..|+....+. .+.|...|+++-++.+-.-|.|+|.|. .+-.|+.....
T Consensus 81 ~v~~ys~~~g~it~~~s----------t~~h~~~v~~~~~~~~~~ciyS~~ad~-------------~v~~~~~~~~~-- 135 (541)
T KOG4547|consen 81 SVLLYSVAGGEITAKLS----------TDKHYGNVNEILDAQRLGCIYSVGADL-------------KVVYILEKEKV-- 135 (541)
T ss_pred cEEEEEecCCeEEEEEe----------cCCCCCcceeeecccccCceEecCCce-------------eEEEEecccce--
Confidence 99999988777643322 245566799999999999999998885 36677665431
Q ss_pred ccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCC
Q 003087 209 EQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTK 288 (849)
Q Consensus 209 ~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 288 (849)
.++..+. .+..+.++.+||||++|++|+ +.|++||+.+.+. +..|+ +
T Consensus 136 ----------~~~~~~~--~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kev-v~~ft------------------g 182 (541)
T KOG4547|consen 136 ----------IIRIWKE--QKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEV-VITFT------------------G 182 (541)
T ss_pred ----------eeeeecc--CCCccceEEEcCCCCEEEecc--ceEEEEEccCceE-EEEec------------------C
Confidence 1111122 344677999999999999875 6899999998865 56665 3
Q ss_pred CCCCcEEEEEecC-----CEEE--EEEeCCcEEEEEecC
Q 003087 289 PISDITDFAWWSD-----NILI--LARKSSIITMIDVLS 320 (849)
Q Consensus 289 ~~~~v~~vaws~D-----~~la--~a~~dgti~lwdl~~ 320 (849)
|..+|..++|--+ |..+ ++....-+.+|-+..
T Consensus 183 h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 183 HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 5577888888654 3322 333444566776654
No 256
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.48 E-value=1.4e-05 Score=99.57 Aligned_cols=246 Identities=16% Similarity=0.229 Sum_probs=138.2
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEE----ecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCC
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTIL----QKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANG 85 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw----~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g 85 (849)
+.|.++.|=+|...|..+. +|.|.+. +..+......|.+ ..+|.+++||||+.+||.+..+|+|-+-+.+-
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v----d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV----DSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE----cCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 6799999999998777664 5666665 3222111112221 56899999999999999999999998765543
Q ss_pred ccceeccccc--ccccccEEEEEe-cCCcccccccceeEEEEeCCCcEEEEEecCCCCccc--cccccc-CCcceecccc
Q 003087 86 EEITRFTNKH--LKVSLPIIGLIA-QDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASI--SSASAS-SSGLTLRRQF 159 (849)
Q Consensus 86 ~~~~~l~~~~--~~~~~~V~~l~f-s~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~--~~~~~~-~~~~~l~~~~ 159 (849)
..+....-+. .+.+..| +|-+ +......|+. |+.... ...+.+ .....+. .
T Consensus 152 d~i~E~~l~~~~~~~~~~V-sVGWGkKeTQF~Gs~--------------------gK~aa~~~~~p~~~~~d~~~~s--~ 208 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHV-SVGWGKKETQFHGSA--------------------GKAAARQLRDPTVPKVDEGKLS--W 208 (928)
T ss_pred eEEEEeecCccccCCCcee-eeccCcccCccCcch--------------------hhhhhhhccCCCCCccccCccc--c
Confidence 3333222111 1111112 2332 1111111111 110000 000000 0000111 1
Q ss_pred CCceEEEEEcCCCceEEEEecCCCCccccCCCCC-CceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEc
Q 003087 160 PQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSG-PCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLIS 238 (849)
Q Consensus 160 ~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G-~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafS 238 (849)
...-..|+|-.||+++|+.+-+. ..| ...||+|+..+.. -+.. + ...| --..++|.
T Consensus 209 dd~~~~ISWRGDG~yFAVss~~~--------~~~~~R~iRVy~ReG~L-----~stS-E----~v~g-----Le~~l~Wr 265 (928)
T PF04762_consen 209 DDGRVRISWRGDGEYFAVSSVEP--------ETGSRRVIRVYSREGEL-----QSTS-E----PVDG-----LEGALSWR 265 (928)
T ss_pred CCCceEEEECCCCcEEEEEEEEc--------CCCceeEEEEECCCceE-----Eecc-c----cCCC-----ccCCccCC
Confidence 23467899999999999887643 124 4579999988631 1100 0 0111 12379999
Q ss_pred cCCCEEEEEeC---CCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEE
Q 003087 239 PQGKFVATSDT---NGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITM 315 (849)
Q Consensus 239 PDG~~LAs~s~---Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~l 315 (849)
|.|+++|+.-. ...|-+|.-.+.+. ..|... +.+ ....|..+.|++|+.+........|++
T Consensus 266 PsG~lIA~~q~~~~~~~VvFfErNGLrh--geF~l~----------~~~----~~~~v~~l~Wn~ds~iLAv~~~~~vqL 329 (928)
T PF04762_consen 266 PSGNLIASSQRLPDRHDVVFFERNGLRH--GEFTLR----------FDP----EEEKVIELAWNSDSEILAVWLEDRVQL 329 (928)
T ss_pred CCCCEEEEEEEcCCCcEEEEEecCCcEe--eeEecC----------CCC----CCceeeEEEECCCCCEEEEEecCCceE
Confidence 99999999865 45677787777532 223210 111 124689999999997544444555999
Q ss_pred EEecCCc
Q 003087 316 IDVLSGL 322 (849)
Q Consensus 316 wdl~~~~ 322 (849)
|...+..
T Consensus 330 Wt~~NYH 336 (928)
T PF04762_consen 330 WTRSNYH 336 (928)
T ss_pred EEeeCCE
Confidence 9988764
No 257
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.47 E-value=1.6e-05 Score=91.13 Aligned_cols=196 Identities=11% Similarity=0.127 Sum_probs=106.5
Q ss_pred CEEEEEECCCCCE-EEEEeC---CCcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCC--Cc
Q 003087 56 ASIYGAWSESHDV-LGIVDD---THTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSD--GF 129 (849)
Q Consensus 56 ~v~~vafSPDG~~-LAs~~~---dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~D--g~ 129 (849)
....-+|||||+. ++..+. +..|+++|+.+.+...+.... ..+....|+||+... +++.+.+ +.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~----g~~~~~~~SPDG~~l------a~~~~~~g~~~ 258 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQ----GMLVVSDVSKDGSKL------LLTMAPKGQPD 258 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCC----CcEEeeEECCCCCEE------EEEEccCCCcE
Confidence 5678999999995 665443 356888898765545554321 234456688876422 1222334 44
Q ss_pred EEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcc
Q 003087 130 LHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELE 209 (849)
Q Consensus 130 v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~ 209 (849)
|.++++.++..... ..+ +.......|||||+.|+-.+... |...|.+.+++++. .+
T Consensus 259 Iy~~dl~~g~~~~L------------T~~-~~~d~~p~~SPDG~~I~F~Sdr~----------g~~~Iy~~dl~~g~-~~ 314 (419)
T PRK04043 259 IYLYDTNTKTLTQI------------TNY-PGIDVNGNFVEDDKRIVFVSDRL----------GYPNIFMKKLNSGS-VE 314 (419)
T ss_pred EEEEECCCCcEEEc------------ccC-CCccCccEECCCCCEEEEEECCC----------CCceEEEEECCCCC-eE
Confidence 55556554432211 111 11123457999999988776543 22235555555432 11
Q ss_pred cceeccccceeeccCCCccccccceEEEccCCCEEEEEeCC-------C--cEEEEecCCCccccccccccccccccccc
Q 003087 210 QLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTN-------G--CLYIFEMDKDNFSLSKFACGERFDLQVAD 280 (849)
Q Consensus 210 ~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~D-------g--tv~LWd~~~~~~~l~~~~~~~~~~~~~~~ 280 (849)
++.. .| ....+|||||+.||-.+.. + .|.+-|+.++.. +.+
T Consensus 315 rlt~----------~g------~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~--~~L------------ 364 (419)
T PRK04043 315 QVVF----------HG------KNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI--RRL------------ 364 (419)
T ss_pred eCcc----------CC------CcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe--EEC------------
Confidence 1210 11 1235899999999888764 2 455566666522 222
Q ss_pred ccCCCCCCCCCCcEEEEEecCCE-EEEEE-eCC--cEEEEEecCCc
Q 003087 281 SLFDGRTKPISDITDFAWWSDNI-LILAR-KSS--IITMIDVLSGL 322 (849)
Q Consensus 281 ~l~~~~~~~~~~v~~vaws~D~~-la~a~-~dg--ti~lwdl~~~~ 322 (849)
+.. . .....+|+|||+ |+.++ ..| .+.+.++.+..
T Consensus 365 --T~~--~---~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 365 --TAN--G---VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNK 403 (419)
T ss_pred --CCC--C---CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCe
Confidence 211 1 112468999996 44443 333 35566666543
No 258
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.45 E-value=0.00019 Score=77.53 Aligned_cols=251 Identities=14% Similarity=0.124 Sum_probs=139.6
Q ss_pred CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCC---CcEEEEecCC--ccceecccccccccccEEE
Q 003087 30 VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDT---HTVYFFKANG--EEITRFTNKHLKVSLPIIG 104 (849)
Q Consensus 30 ~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~d---gtIrlWd~~g--~~~~~l~~~~~~~~~~V~~ 104 (849)
++.|..|+.+...+...........+..+-|+|+|++++|-++..+ |.|--+.+++ ..+..+.......+.+ +.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p-~y 93 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPP-CY 93 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCC-eE
Confidence 4679999876443332211111225567889999999999887654 6676666543 3344443332221222 56
Q ss_pred EEecCCcccccccceeEEEEeC-CCcEEEEEecCCCCcccccccccCCccee--ccccCCceEEEEEcCCCceEEEEecC
Q 003087 105 LIAQDETDVQRSCLCSFTVFTS-DGFLHQIEISQDPSASISSASASSSGLTL--RRQFPQNVICTDYHPELSLLSVVSNT 181 (849)
Q Consensus 105 l~fs~~~~~~~s~~~~~~~~s~-Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~V~svafsPdg~lLas~g~d 181 (849)
|++++++.. ++++++ -|.|.++-+..++......+.. .|...- ..+-...+-+..|.|||++|++.. -
T Consensus 94 vsvd~~g~~-------vf~AnY~~g~v~v~p~~~dG~l~~~v~~~-~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~D-L 164 (346)
T COG2706 94 VSVDEDGRF-------VFVANYHSGSVSVYPLQADGSLQPVVQVV-KHTGSGPHERQESPHVHSANFTPDGRYLVVPD-L 164 (346)
T ss_pred EEECCCCCE-------EEEEEccCceEEEEEcccCCccccceeee-ecCCCCCCccccCCccceeeeCCCCCEEEEee-c
Confidence 777776532 233333 3778888876644322111000 000000 001011278899999999997753 2
Q ss_pred CCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEe-CCCcEEEEecCC
Q 003087 182 DTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSD-TNGCLYIFEMDK 260 (849)
Q Consensus 182 ~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s-~Dgtv~LWd~~~ 260 (849)
+ .-.|.++++..+. +.+... ..+ .+| .+-+.|.|+|+|++..... .+++|-+|..++
T Consensus 165 G-----------~Dri~~y~~~dg~-L~~~~~----~~v--~~G----~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~ 222 (346)
T COG2706 165 G-----------TDRIFLYDLDDGK-LTPADP----AEV--KPG----AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP 222 (346)
T ss_pred C-----------CceEEEEEcccCc-cccccc----ccc--CCC----CCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence 1 1138889987541 111100 111 122 3667899999999988776 599999999987
Q ss_pred CcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEE--eCCcEEEEEecCC
Q 003087 261 DNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILAR--KSSIITMIDVLSG 321 (849)
Q Consensus 261 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~--~dgti~lwdl~~~ 321 (849)
..-.+... |.....+..++ ...+..+|.-++||+.+-++ ....|.++.+...
T Consensus 223 ~~g~~~~l----Q~i~tlP~dF~-----g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 223 AVGKFEEL----QTIDTLPEDFT-----GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred CCceEEEe----eeeccCccccC-----CCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 41111111 11222222222 22456788899999855444 3447888888643
No 259
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=2.6e-05 Score=87.75 Aligned_cols=242 Identities=12% Similarity=0.154 Sum_probs=143.2
Q ss_pred cccccceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCC--EEEE-----EeCCCcEE
Q 003087 7 PRKTKKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHD--VLGI-----VDDTHTVY 79 (849)
Q Consensus 7 ~~~~~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~--~LAs-----~~~dgtIr 79 (849)
.+|...-|...||+|-.+.|-...+.+.+++..+ +..+..++. ...+...++||-+. ++|+ .+.-+.||
T Consensus 122 q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~-f~~~~~kl~---~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vr 197 (566)
T KOG2315|consen 122 QKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGS-FKTIQHKLS---VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVR 197 (566)
T ss_pred ehhhhcCcccccccchhhhhhhhcceEEEEecCC-ccceeeeee---ccceeeEEecCCCCCceEEEEccCCCCCCcEEE
Confidence 4455555899999999888877788999998654 333333332 45788999998754 4553 45566799
Q ss_pred EEecC-CccceecccccccccccEEEEEecCCcccccccceeEEEE---------eC--CCcEEEEEecCCCCccccccc
Q 003087 80 FFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVF---------TS--DGFLHQIEISQDPSASISSAS 147 (849)
Q Consensus 80 lWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~---------s~--Dg~v~lw~~~~~~~~~~~~~~ 147 (849)
||... +..-..+-....=..+.| .+-+.+.+.+. +.+. || ..++++.++. |....
T Consensus 198 i~~~~~~~~~~~~a~ksFFkadkv-qm~WN~~gt~L------LvLastdVDktn~SYYGEq~Lyll~t~-g~s~~----- 264 (566)
T KOG2315|consen 198 IYKYPEEGQHQPVANKSFFKADKV-QMKWNKLGTAL------LVLASTDVDKTNASYYGEQTLYLLATQ-GESVS----- 264 (566)
T ss_pred Eeccccccccchhhhcccccccee-EEEeccCCceE------EEEEEEeecCCCccccccceEEEEEec-CceEE-----
Confidence 99876 111111110000000111 12223221110 1111 12 2345555554 11111
Q ss_pred ccCCcceeccccCCceEEEEEcCCCceEEEEe-cCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCC
Q 003087 148 ASSSGLTLRRQFPQNVICTDYHPELSLLSVVS-NTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGH 226 (849)
Q Consensus 148 ~~~~~~~l~~~~~~~V~svafsPdg~lLas~g-~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~ 226 (849)
..|.+ .++|.++.|+|+|+-++++- ..- -.+++++..+.. +.+.
T Consensus 265 -----V~L~k--~GPVhdv~W~~s~~EF~VvyGfMP------------Akvtifnlr~~~----v~df------------ 309 (566)
T KOG2315|consen 265 -----VPLLK--EGPVHDVTWSPSGREFAVVYGFMP------------AKVTIFNLRGKP----VFDF------------ 309 (566)
T ss_pred -----EecCC--CCCceEEEECCCCCEEEEEEeccc------------ceEEEEcCCCCE----eEeC------------
Confidence 12221 34799999999999887653 332 137888877642 2221
Q ss_pred ccccccceEEEccCCCEEEEEeCC---CcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE
Q 003087 227 EVQLAHPKVLISPQGKFVATSDTN---GCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI 303 (849)
Q Consensus 227 ~h~~~V~~vafSPDG~~LAs~s~D---gtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~ 303 (849)
-+++-+.+-|||.|++|+-+|++ |.+-+||+.+.++ +.++.. ..-.-+.|+|||.
T Consensus 310 -~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~-i~~~~a--------------------~~tt~~eW~PdGe 367 (566)
T KOG2315|consen 310 -PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKL-IAKFKA--------------------ANTTVFEWSPDGE 367 (566)
T ss_pred -CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhh-cccccc--------------------CCceEEEEcCCCc
Confidence 13466789999999999999975 8999999998543 333321 1234478999997
Q ss_pred E-EEEE------eCCcEEEEEecCCc
Q 003087 304 L-ILAR------KSSIITMIDVLSGL 322 (849)
Q Consensus 304 l-a~a~------~dgti~lwdl~~~~ 322 (849)
. ++|. -|+.++||+..+..
T Consensus 368 ~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 368 YFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred EEEEEeccccEEecCCeEEEEecCce
Confidence 3 3332 58899999987543
No 260
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.42 E-value=1.1e-06 Score=102.01 Aligned_cols=193 Identities=13% Similarity=0.159 Sum_probs=134.0
Q ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEEecC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEE
Q 003087 54 LGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQ 132 (849)
Q Consensus 54 ~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~l 132 (849)
...|-|++|--.|.++.+|++|.-|+||... +.++..+.+|. ..|..++.+-.....++ +++|..|++
T Consensus 190 ~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs----~ditdlavs~~n~~iaa-------aS~D~vIrv 258 (1113)
T KOG0644|consen 190 RNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHS----GDITDLAVSSNNTMIAA-------ASNDKVIRV 258 (1113)
T ss_pred hhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCc----cccchhccchhhhhhhh-------cccCceEEE
Confidence 5678999999999999999999999999975 56677776654 45667776544333333 389999999
Q ss_pred EEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCccc-c
Q 003087 133 IEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQ-L 211 (849)
Q Consensus 133 w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~-l 211 (849)
|.+..+...+++. +|+..|++++|||-- +.+.|+| +++||..- .+ +
T Consensus 259 Wrl~~~~pvsvLr------------ghtgavtaiafsP~~----sss~dgt-------------~~~wd~r~----~~~~ 305 (1113)
T KOG0644|consen 259 WRLPDGAPVSVLR------------GHTGAVTAIAFSPRA----SSSDDGT-------------CRIWDARL----EPRI 305 (1113)
T ss_pred EecCCCchHHHHh------------ccccceeeeccCccc----cCCCCCc-------------eEeccccc----cccc
Confidence 9998877655533 567789999999964 4556653 67888761 11 1
Q ss_pred eeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCC
Q 003087 212 YTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPIS 291 (849)
Q Consensus 212 ~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (849)
+.+... .+. ..+-+-++.|-..|.-.+|++.|++-+.|.++-. -|. ..
T Consensus 306 y~prp~----~~~---~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l-----~~~--------------------~~ 353 (1113)
T KOG0644|consen 306 YVPRPL----KFT---EKDLVDSILFENNGDRFLTGSRDGEARNHEFEQL-----AWR--------------------SN 353 (1113)
T ss_pred cCCCCC----Ccc---cccceeeeeccccccccccccCCcccccchhhHh-----hhh--------------------cc
Confidence 111100 011 2346668888888999999999999999988732 111 12
Q ss_pred CcEEEEEecCC--EEEEEEeCCcEEEEEecCCc
Q 003087 292 DITDFAWWSDN--ILILARKSSIITMIDVLSGL 322 (849)
Q Consensus 292 ~v~~vaws~D~--~la~a~~dgti~lwdl~~~~ 322 (849)
.+.-+++++|- ..+++..+-.+.+|++.+|+
T Consensus 354 ~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~ 386 (1113)
T KOG0644|consen 354 LLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ 386 (1113)
T ss_pred ceEEEeccccccccceeeeeeeEeeeeecccch
Confidence 23334555543 35677888889999999986
No 261
>KOG1797 consensus Uncharacterized conserved protein (Neuroblastoma-amplified protein) [Function unknown]
Probab=98.40 E-value=5.5e-07 Score=106.36 Aligned_cols=261 Identities=18% Similarity=0.288 Sum_probs=185.2
Q ss_pred eEEEEEEeccCCHHHHHHH-HHcccCHHHHHHHHHHhC-CChhHHHHHHHhc-----CCCCHHHHHHhhhcCCChHHHHH
Q 003087 378 LYWSLISFSERSVPEMYNI-LISHRNYQTAIDFANYHG-LDTDEVLKSQWLN-----SSQGTDEINMFLSKIKDQAFILS 450 (849)
Q Consensus 378 ~~~~l~~~~~~tp~e~~~~-~i~~~~~~~A~~lA~~~~-ld~d~Vyk~~w~~-----s~~~~~~i~~~L~kI~D~~wV~~ 450 (849)
+...++.+..+|-|.+|++ .+..++|..|...++.|. .|+-.|.+.-|.. ..++|+.+-..+..|+|+.|.+.
T Consensus 411 ~Eks~~lv~~at~Eyffs~ttL~~~~~~~ARecl~~~~~~~~~V~~e~D~Idav~~L~k~gVe~lp~q~k~i~D~~~~ik 490 (1660)
T KOG1797|consen 411 FEKSLILVPTATLEYFFSRTTLKEHDYTRARECLETYDTIDIYVVLESDWIDAVSKLNKVGVEDLPDQLKRIGDSEWAIK 490 (1660)
T ss_pred hhhhHHHhhHHHHHHHhcCCcchHHHHHHHHHHHHHhccCchhhhhhhHHHHHhccccccchhhhHHHHHhcCChHHHHH
Confidence 4667788889999999999 899999999999999998 6777888888863 55899999999999999999999
Q ss_pred HHhhccCCCHHHHHHHHHHHhhccccCCccccCCcccchhhHHHHHHHHHHHHHHHHHHHHhhhcCCchH-HHHHhhcCc
Q 003087 451 ECVDKVGRTEDSAKALLAHGLHLTNQYKFSETEDDEYSQIWDYRIARLQLLQFGDRLETYLGINMGRYYA-EYSKFRIMP 529 (849)
Q Consensus 451 ~Cl~~~~~~~~~~~~LL~~gL~~t~~~~~~~~~~~~~~~~~~~~~~r~~ll~~ldRL~t~~~i~~~~f~~-~~~~Fr~~~ 529 (849)
+|+.+-|++|+..++|+..|+-....+.- ..+. |.++|....|=. +. -+...++.+
T Consensus 491 ~ciS~dp~~y~~~~~Li~la~lL~~~g~n------~~e~-------~~~vle~~~~~a----------~v~~dm~aa~~~ 547 (1660)
T KOG1797|consen 491 QCISADPDDYEVHKALIDLALLLGETGQN------RLEH-------HWRVLEVCRIKA----------DVDIDMMAANGS 547 (1660)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHhccC------hHHH-------HHHHHHHHHHHH----------HHHhHHHHhhhH
Confidence 99999999999999999999655433210 0011 222332222100 11 234566678
Q ss_pred HHHHHHH-HHHcCCcch-HHHHHHHCCCCccHHHHHHHhhCCCCCCcccccccCCCCCCCCCccCccccch---hh---h
Q 003087 530 IHEAGVN-LAESGKIGA-LNLLFKRHPYSLASSVLQILAAIPETVPVQTYTQLLPGRSPPMTVAMREEDWV---EC---D 601 (849)
Q Consensus 530 lv~~A~~-~A~~g~i~a-L~~L~~rh~~~l~p~~l~ILs~lPEt~~P~~Y~~LLP~~~~~~~~~~r~~Dw~---e~---~ 601 (849)
++.+|.+ |+..+|+++ |..--.+.+.++..+.--|+.+||-+. |+.|+-|||....... +..|- +. +
T Consensus 548 Cl~l~~tG~~~~wDi~sql~rs~~~~~~d~~~rq~li~fAL~hC~-p~sie~LL~a~~d~~~----~~Q~E~lyQ~~dFq 622 (1660)
T KOG1797|consen 548 CLDLALTGFAHNWDIDSQLTRSIESNMADMKHRQKLILFALPHCT-PTSIEILLPAREDGET----EEQWELLYQQNDFQ 622 (1660)
T ss_pred HHHHHHhcCCCccchhhHhhcChhhhhhhHHHHHHHHHhhcCCCC-hhHHHHHhhhccccch----HHHHHHHHHhcchH
Confidence 8888887 999999999 888888888888777778999999887 9999999998764421 22221 00 0
Q ss_pred hhhHHhhcCCCcc-ccccccccchhhhcccCCCCC--ChHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHcC
Q 003087 602 KMVRFIRRLPENH-EISDQIRTEPIVRRSLRSLWP--SINELTIWYKSRARDIDCYSGQLDNCLCLIDFACRKG 672 (849)
Q Consensus 602 ~~~~~i~~~~~~~-~~~~~~~~~~~l~~~~~~~~~--~~~~l~~Wy~~RA~~ID~~sG~~~~al~Ll~~~~~~g 672 (849)
.+.+-++.+...+ ...+.++. ++. +- .| ....+..|...--++|+.++|+++.+..++++...+|
T Consensus 623 ~~~egld~i~a~~P~~~s~i~e---~~e--~g-ip~s~tad~l~W~~~t~~~~k~~~~~t~~~v~~lQ~vs~~~ 690 (1660)
T KOG1797|consen 623 GIYEGLDKILAEHPDAESLIRE---INE--GG-IPNSETADFLSWVRETLPKIKFECGMTDICVNLLQIVSERG 690 (1660)
T ss_pred HHhhhhhhhhhcCCchHHHHHH---hhc--cC-CcCcchhhHHHHHHHhccceeeeccchhhhHhHHHHHhccc
Confidence 1111111111110 01112211 010 11 12 2356779999999999999999999999999998886
No 262
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.38 E-value=1.3e-05 Score=101.52 Aligned_cols=224 Identities=9% Similarity=0.108 Sum_probs=125.8
Q ss_pred cceEEEEEcCCCCeEEEEe--CCeEEEEecCCCCCcceeeeeec--------C--------CCCEEEEEECC-CCCEEEE
Q 003087 11 KKQVSLFISPRGERVAVAA--VNQVTILQKDDDYQEPCGIFNCT--------G--------LGASIYGAWSE-SHDVLGI 71 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas--~~~i~iw~~~~~~~~~~~~~~~~--------~--------~~~v~~vafSP-DG~~LAs 71 (849)
+....|+|+|+|+.|.++. .+.|++++..++. +.++... + ...-..|+|+| +|.+.++
T Consensus 624 ~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~---V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVa 700 (1057)
T PLN02919 624 NRPQGLAYNAKKNLLYVADTENHALREIDFVNET---VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIA 700 (1057)
T ss_pred CCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE---EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEE
Confidence 4568899999999776664 3578888765432 1111100 0 01125799999 6777778
Q ss_pred EeCCCcEEEEecCCccceeccccc--------ccc---cccEEEEEecCCcccccccceeEEEE-eCCCcEEEEEecCCC
Q 003087 72 VDDTHTVYFFKANGEEITRFTNKH--------LKV---SLPIIGLIAQDETDVQRSCLCSFTVF-TSDGFLHQIEISQDP 139 (849)
Q Consensus 72 ~~~dgtIrlWd~~g~~~~~l~~~~--------~~~---~~~V~~l~fs~~~~~~~s~~~~~~~~-s~Dg~v~lw~~~~~~ 139 (849)
...+++|++||..+..+..+.+.. ... -..-.+|+|+|++.. ++++ +.++.|+.||+.++.
T Consensus 701 d~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~-------LYVADs~n~~Irv~D~~tg~ 773 (1057)
T PLN02919 701 MAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKE-------LYIADSESSSIRALDLKTGG 773 (1057)
T ss_pred ECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCE-------EEEEECCCCeEEEEECCCCc
Confidence 888899999998754443332110 000 012345777665431 3332 567899999987654
Q ss_pred Cccccc--ccccCCcceecc--------ccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcc
Q 003087 140 SASISS--ASASSSGLTLRR--------QFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELE 209 (849)
Q Consensus 140 ~~~~~~--~~~~~~~~~l~~--------~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~ 209 (849)
...... ...+.....+.. .. ..-.+++|+|+|++.++-+.++ .|++|+..++.- .
T Consensus 774 ~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l-~~P~Gvavd~dG~LYVADs~N~-------------rIrviD~~tg~v-~ 838 (1057)
T PLN02919 774 SRLLAGGDPTFSDNLFKFGDHDGVGSEVLL-QHPLGVLCAKDGQIYVADSYNH-------------KIKKLDPATKRV-T 838 (1057)
T ss_pred EEEEEecccccCcccccccCCCCchhhhhc-cCCceeeEeCCCcEEEEECCCC-------------EEEEEECCCCeE-E
Confidence 211000 000000001100 01 1236889999999766544443 388998866421 1
Q ss_pred cce-eccccceee--ccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCc
Q 003087 210 QLY-TTQIEGLYC--EPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDN 262 (849)
Q Consensus 210 ~l~-~~~~~~~~~--~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~ 262 (849)
.+. .+. .|.-. ...+ +......|+++|||+++++-+.+++|++||+.++.
T Consensus 839 tiaG~G~-~G~~dG~~~~a--~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 839 TLAGTGK-AGFKDGKALKA--QLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EEeccCC-cCCCCCccccc--ccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 111 000 00000 0011 22345689999999999988899999999998764
No 263
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.36 E-value=2.4e-05 Score=80.83 Aligned_cols=206 Identities=10% Similarity=0.017 Sum_probs=127.3
Q ss_pred EEEECC-----CCCEEEEEeCCCcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEE
Q 003087 59 YGAWSE-----SHDVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQI 133 (849)
Q Consensus 59 ~vafSP-----DG~~LAs~~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw 133 (849)
.+.|-| ...+||.|+..|...+|..+.++...... ...+.+|...... ..-+. .+.+++.|.++++.
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~c-----d~snn~v~~~~r~-cd~~~--~~~i~sndht~k~~ 143 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQC-----DVSNNDVTLVKRY-CDLKF--PLNIASNDHTGKTM 143 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeee-----cccccchhhhhhh-ccccc--ceeeccCCcceeEE
Confidence 455555 56899999999999999987554211100 0112222221100 00000 35677999999999
Q ss_pred EecCCCCcccccccccCCcceeccccCC-ceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCC-cCcccc
Q 003087 134 EISQDPSASISSASASSSGLTLRRQFPQ-NVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHN-LELEQL 211 (849)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~-~~~~~l 211 (849)
+++.+..... .|.++ .+++.++|||+++++++|.... |-++.++.. ...+.+
T Consensus 144 ~~~~~s~~~~-------------~h~~~~~~ns~~~snd~~~~~~Vgds~~-------------Vf~y~id~~sey~~~~ 197 (344)
T KOG4532|consen 144 VVSGDSNKFA-------------VHNQNLTQNSLHYSNDPSWGSSVGDSRR-------------VFRYAIDDESEYIENI 197 (344)
T ss_pred EEecCcccce-------------eeccccceeeeEEcCCCceEEEecCCCc-------------ceEEEeCCccceeeee
Confidence 9986544221 13332 3899999999999999987763 333444332 111111
Q ss_pred eeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCC
Q 003087 212 YTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPIS 291 (849)
Q Consensus 212 ~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (849)
.. +. .++.-+..+||......|++..||++.|||+....-. .... +..+..|.+
T Consensus 198 ~~----------a~--t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tp-m~~~-------------sstrp~hnG 251 (344)
T KOG4532|consen 198 YE----------AP--TSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATP-MAEI-------------SSTRPHHNG 251 (344)
T ss_pred Ee----------cc--cCCCceeeeeccCcceEEEEecCCcEEEEEecccccc-hhhh-------------cccCCCCCC
Confidence 10 11 2345678999999999999999999999999865321 1111 111233556
Q ss_pred CcEEEEEecCCE---EEEEEeCCcEEEEEecCCccc
Q 003087 292 DITDFAWWSDNI---LILARKSSIITMIDVLSGLKV 324 (849)
Q Consensus 292 ~v~~vaws~D~~---la~a~~dgti~lwdl~~~~~l 324 (849)
.+..+.|++.|- |...-.=+.+.|.|+.++++.
T Consensus 252 a~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 252 AFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNH 287 (344)
T ss_pred ceEEEEecCCCcceEEEEecCcceEEEEEcccCcee
Confidence 688899998764 334445668999999998743
No 264
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.28 E-value=7.8e-06 Score=101.58 Aligned_cols=202 Identities=11% Similarity=0.161 Sum_probs=135.4
Q ss_pred ccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCc
Q 003087 8 RKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGE 86 (849)
Q Consensus 8 ~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~ 86 (849)
+++..|..+.=.|--.+-.+|+ |+.|++|-+..+ .++-.+...|...|+...|+.+|.-.+.++.||.+-+|.++-+
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~--~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk 2283 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHG--QQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK 2283 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCC--CeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCc
Confidence 3445666666667666666665 789999976532 3333344334678899999999999999999999999998855
Q ss_pred cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT 166 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv 166 (849)
.......|. .....+.|-....+.+.- -+.++.+.+||.-..+..+... .-|..+++++
T Consensus 2284 ~~~s~qchn----k~~~Df~Fi~s~~~tag~------s~d~~n~~lwDtl~~~~~s~v~-----------~~H~~gaT~l 2342 (2439)
T KOG1064|consen 2284 PYTSWQCHN----KALSDFRFIGSLLATAGR------SSDNRNVCLWDTLLPPMNSLVH-----------TCHDGGATVL 2342 (2439)
T ss_pred ceeccccCC----ccccceeeeehhhhcccc------CCCCCcccchhcccCcccceee-----------eecCCCceEE
Confidence 544443333 234455553322222211 1577899999975444322211 2456789999
Q ss_pred EEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEE
Q 003087 167 DYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVAT 246 (849)
Q Consensus 167 afsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs 246 (849)
+|-|..++|++||.+| .|.+||+.... + . |.-.. +- --.++++
T Consensus 2343 ~~~P~~qllisggr~G-------------~v~l~D~rqrq----l-----~----------h~~~~----~~-~~~~f~~ 2385 (2439)
T KOG1064|consen 2343 AYAPKHQLLISGGRKG-------------EVCLFDIRQRQ----L-----R----------HTFQA----LD-TREYFVT 2385 (2439)
T ss_pred EEcCcceEEEecCCcC-------------cEEEeehHHHH----H-----H----------HHhhh----hh-hhheeec
Confidence 9999999999999886 28999987531 1 1 21111 21 3456889
Q ss_pred EeCCCcEEEEecCCCccccccccc
Q 003087 247 SDTNGCLYIFEMDKDNFSLSKFAC 270 (849)
Q Consensus 247 ~s~Dgtv~LWd~~~~~~~l~~~~~ 270 (849)
++..|.++||++..... ++.++.
T Consensus 2386 ~ss~g~ikIw~~s~~~l-l~~~p~ 2408 (2439)
T KOG1064|consen 2386 GSSEGNIKIWRLSEFGL-LHTFPS 2408 (2439)
T ss_pred cCcccceEEEEccccch-hhcCch
Confidence 99999999999998754 677764
No 265
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.27 E-value=0.00054 Score=78.50 Aligned_cols=69 Identities=17% Similarity=0.260 Sum_probs=53.2
Q ss_pred EEEEEcCCCCeEEEEeCC------------eEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Q 003087 14 VSLFISPRGERVAVAAVN------------QVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFF 81 (849)
Q Consensus 14 ~slafSPdG~~LAsas~~------------~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlW 81 (849)
..+|.+|.|--+|...+. .|.|++.. |.+++.+... .+.+..+.|+.+- .|++...||+++++
T Consensus 32 ~~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s---G~ll~~i~w~-~~~iv~~~wt~~e-~LvvV~~dG~v~vy 106 (410)
T PF04841_consen 32 YIVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS---GKLLSSIPWD-SGRIVGMGWTDDE-ELVVVQSDGTVRVY 106 (410)
T ss_pred eeEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC---CCEeEEEEEC-CCCEEEEEECCCC-eEEEEEcCCEEEEE
Confidence 357889999999998765 57787754 4566666544 3789999999865 45567789999999
Q ss_pred ecCCcc
Q 003087 82 KANGEE 87 (849)
Q Consensus 82 d~~g~~ 87 (849)
|..|+.
T Consensus 107 ~~~G~~ 112 (410)
T PF04841_consen 107 DLFGEF 112 (410)
T ss_pred eCCCce
Confidence 998877
No 266
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.22 E-value=4.1e-05 Score=86.79 Aligned_cols=190 Identities=15% Similarity=0.189 Sum_probs=122.8
Q ss_pred cCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeec--CCCCEEEEEE------CC--------------CCCEEEEEeCC
Q 003087 19 SPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCT--GLGASIYGAW------SE--------------SHDVLGIVDDT 75 (849)
Q Consensus 19 SPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~--~~~~v~~vaf------SP--------------DG~~LAs~~~d 75 (849)
+|-+.++|.+. ||.++||+...+. ....|.+. -.+.-++.+| || |--.||-|-..
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~--~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~ 79 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQ--LQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ 79 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCce--eeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC
Confidence 56678999885 7899999976431 11122211 0111122222 33 55667778888
Q ss_pred CcEEEEecCCccce-ecc-cccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcc
Q 003087 76 HTVYFFKANGEEIT-RFT-NKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGL 153 (849)
Q Consensus 76 gtIrlWd~~g~~~~-~l~-~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~ 153 (849)
|.|-++++.+.++. .+. ..|. ..|..+....+ . ..|++++.|+.+..|+.........
T Consensus 80 g~v~~ys~~~g~it~~~st~~h~---~~v~~~~~~~~----~---~ciyS~~ad~~v~~~~~~~~~~~~~---------- 139 (541)
T KOG4547|consen 80 GSVLLYSVAGGEITAKLSTDKHY---GNVNEILDAQR----L---GCIYSVGADLKVVYILEKEKVIIRI---------- 139 (541)
T ss_pred ccEEEEEecCCeEEEEEecCCCC---Ccceeeecccc----c---CceEecCCceeEEEEecccceeeee----------
Confidence 99999999855544 333 2222 34544442221 1 2488889999999999876554322
Q ss_pred eeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccc
Q 003087 154 TLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHP 233 (849)
Q Consensus 154 ~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~ 233 (849)
+..+ +..+.++.++|||..|++||.. |++|+..+.. .+..+.| |...|+
T Consensus 140 -~~~~-~~~~~sl~is~D~~~l~~as~~---------------ik~~~~~~ke------------vv~~ftg--h~s~v~ 188 (541)
T KOG4547|consen 140 -WKEQ-KPLVSSLCISPDGKILLTASRQ---------------IKVLDIETKE------------VVITFTG--HGSPVR 188 (541)
T ss_pred -eccC-CCccceEEEcCCCCEEEeccce---------------EEEEEccCce------------EEEEecC--CCcceE
Confidence 1222 3359999999999999988654 8999998752 1223456 888999
Q ss_pred eEEEccC-----CCE-EEEEeCCCcEEEEecCCC
Q 003087 234 KVLISPQ-----GKF-VATSDTNGCLYIFEMDKD 261 (849)
Q Consensus 234 ~vafSPD-----G~~-LAs~s~Dgtv~LWd~~~~ 261 (849)
+++|--+ |.+ |.++..+.-+-+|-+.+.
T Consensus 189 t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 189 TLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred EEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 9999887 665 556667778888988763
No 267
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.21 E-value=1.7e-05 Score=86.20 Aligned_cols=165 Identities=8% Similarity=0.065 Sum_probs=99.3
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEE---eCCCcEEEE
Q 003087 57 SIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVF---TSDGFLHQI 133 (849)
Q Consensus 57 v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~---s~Dg~v~lw 133 (849)
...+..||+|++||++..+....+++..++.- . ..+.. +..+.-.+........+..+.+. +....+.+|
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-~--~kl~~----~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~ 137 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK-G--AKLLD----VSCVPKRPTAISFIREDTSVLVADKAGDVYSFDIL 137 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCC-c--ceeee----EeecccCcceeeeeeccceEEEEeecCCceeeeee
Confidence 45688999999999999998888888765432 0 01110 11111111111111111112222 344555666
Q ss_pred EecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCccccee
Q 003087 134 EISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYT 213 (849)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~ 213 (849)
++..+.... +.|| -.-+..|+||||++.+.++..|. .|++=+.......+
T Consensus 138 s~~~~~~~~------------~lGh-vSml~dVavS~D~~~IitaDRDE-------------kIRvs~ypa~f~Ie---- 187 (390)
T KOG3914|consen 138 SADSGRCEP------------ILGH-VSMLLDVAVSPDDQFIITADRDE-------------KIRVSRYPATFVIE---- 187 (390)
T ss_pred cccccCcch------------hhhh-hhhhheeeecCCCCEEEEecCCc-------------eEEEEecCcccchh----
Confidence 555433222 2234 34599999999999999987775 26654443322111
Q ss_pred ccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccc
Q 003087 214 TQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFA 269 (849)
Q Consensus 214 ~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~ 269 (849)
++. -| |..-|..++.- |++.|.|+|.|++|++||+.++++ +.++.
T Consensus 188 ----sfc---lG--H~eFVS~isl~-~~~~LlS~sGD~tlr~Wd~~sgk~-L~t~d 232 (390)
T KOG3914|consen 188 ----SFC---LG--HKEFVSTISLT-DNYLLLSGSGDKTLRLWDITSGKL-LDTCD 232 (390)
T ss_pred ----hhc---cc--cHhheeeeeec-cCceeeecCCCCcEEEEecccCCc-ccccc
Confidence 221 24 77888899985 567799999999999999999876 55554
No 268
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=6.2e-05 Score=81.49 Aligned_cols=254 Identities=10% Similarity=0.100 Sum_probs=151.9
Q ss_pred cccccceEEEEEcCCCCe--EEEEe-CCeEEEEecCCCCCccee----eeeecCCCCEEEEEECCCCCEEEEEeCCCcEE
Q 003087 7 PRKTKKQVSLFISPRGER--VAVAA-VNQVTILQKDDDYQEPCG----IFNCTGLGASIYGAWSESHDVLGIVDDTHTVY 79 (849)
Q Consensus 7 ~~~~~~v~slafSPdG~~--LAsas-~~~i~iw~~~~~~~~~~~----~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIr 79 (849)
+.++.+|.+++|--||+. |...+ +..+.+....+....... .. ..+...|..++-+ ||+++ +|-++|.++
T Consensus 52 ~~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~-~l~~~~I~gl~~~-dg~Li-tc~~sG~l~ 128 (412)
T KOG3881|consen 52 VDELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTV-SLGTKSIKGLKLA-DGTLI-TCVSSGNLQ 128 (412)
T ss_pred cchhhhhhhheeecCCceeEeeccccCcccccccccCCcccccccccccc-ccccccccchhhc-CCEEE-EEecCCcEE
Confidence 567788999999877763 32222 333434333322111100 01 1125567666666 66655 556779999
Q ss_pred EEecCC-----ccceecccccccccccEEEEEecCCcccccccceeEEEEeCC--CcEEEEEecCCCCccccc-ccccCC
Q 003087 80 FFKANG-----EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSD--GFLHQIEISQDPSASISS-ASASSS 151 (849)
Q Consensus 80 lWd~~g-----~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~D--g~v~lw~~~~~~~~~~~~-~~~~~~ 151 (849)
+|+... ..+..+..+ ..+..|--.|. . .+.++.+|.. ..+.+||+.+.+ ++++ +.....
T Consensus 129 ~~~~k~~d~hss~l~~la~g-----~g~~~~r~~~~-----~-p~Iva~GGke~~n~lkiwdle~~~--qiw~aKNvpnD 195 (412)
T KOG3881|consen 129 VRHDKSGDLHSSKLIKLATG-----PGLYDVRQTDT-----D-PYIVATGGKENINELKIWDLEQSK--QIWSAKNVPND 195 (412)
T ss_pred EEeccCCccccccceeeecC-----CceeeeccCCC-----C-CceEecCchhcccceeeeecccce--eeeeccCCCCc
Confidence 999862 222222111 11222221110 0 0134445666 678889887652 2222 111000
Q ss_pred cceeccccCCceEEEEEcCC--CceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccc
Q 003087 152 GLTLRRQFPQNVICTDYHPE--LSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQ 229 (849)
Q Consensus 152 ~~~l~~~~~~~V~svafsPd--g~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~ 229 (849)
- |.-.-+-++.++.|-|. ...+|++..-+ .|+++|..... .++....+ -.
T Consensus 196 ~--L~LrVPvW~tdi~Fl~g~~~~~fat~T~~h-------------qvR~YDt~~qR--RPV~~fd~-----------~E 247 (412)
T KOG3881|consen 196 R--LGLRVPVWITDIRFLEGSPNYKFATITRYH-------------QVRLYDTRHQR--RPVAQFDF-----------LE 247 (412)
T ss_pred c--ccceeeeeeccceecCCCCCceEEEEecce-------------eEEEecCcccC--cceeEecc-----------cc
Confidence 1 11122446889999998 88888876554 38999887542 23332211 24
Q ss_pred cccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEE
Q 003087 230 LAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILAR 308 (849)
Q Consensus 230 ~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~ 308 (849)
.+|.++..-|+|++|.+|..-|.+..+|+.+... +... .++..+.+.+|.-.|.+. +|+++
T Consensus 248 ~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl-~g~~-----------------~kg~tGsirsih~hp~~~~las~G 309 (412)
T KOG3881|consen 248 NPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL-LGCG-----------------LKGITGSIRSIHCHPTHPVLASCG 309 (412)
T ss_pred CcceeeeecCCCcEEEEecccchhheecccCcee-eccc-----------------cCCccCCcceEEEcCCCceEEeec
Confidence 5889999999999999999999999999997743 2221 023456788888888865 67899
Q ss_pred eCCcEEEEEecCCc
Q 003087 309 KSSIITMIDVLSGL 322 (849)
Q Consensus 309 ~dgti~lwdl~~~~ 322 (849)
-|..|||+|+.+.+
T Consensus 310 LDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 310 LDRYVRIHDIKTRK 323 (412)
T ss_pred cceeEEEeecccch
Confidence 99999999999954
No 269
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.19 E-value=2.6e-05 Score=81.83 Aligned_cols=243 Identities=16% Similarity=0.151 Sum_probs=138.1
Q ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEEecC---Ccc---ceecccccccc--------cccEEEEEecCCcccccccce
Q 003087 54 LGASIYGAWSESHDVLGIVDDTHTVYFFKAN---GEE---ITRFTNKHLKV--------SLPIIGLIAQDETDVQRSCLC 119 (849)
Q Consensus 54 ~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~---g~~---~~~l~~~~~~~--------~~~V~~l~fs~~~~~~~s~~~ 119 (849)
..-|++|-|-.-|.+||+|+..|.|-++... |-+ .+.+..|..++ .-.|..+-+-+++ ...
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t-----~r~ 100 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDT-----GRN 100 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCC-----Ccc
Confidence 4568999999999999999999999999754 322 22233332221 1134444443322 223
Q ss_pred eEEEEeCCCcEEEEEecCCCCc--------------------cccc---ccccCC-------cc-eeccccCCceEEEEE
Q 003087 120 SFTVFTSDGFLHQIEISQDPSA--------------------SISS---ASASSS-------GL-TLRRQFPQNVICTDY 168 (849)
Q Consensus 120 ~~~~~s~Dg~v~lw~~~~~~~~--------------------~~~~---~~~~~~-------~~-~l~~~~~~~V~svaf 168 (849)
+|.+.+.|.+|++|.+...... +..+ .-.+.| +. -....|+-.|+++.|
T Consensus 101 hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~ 180 (460)
T COG5170 101 HFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISF 180 (460)
T ss_pred eEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeee
Confidence 7888999999999998543110 0000 000000 00 011234456999999
Q ss_pred cCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCE-EEEE
Q 003087 169 HPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKF-VATS 247 (849)
Q Consensus 169 sPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~-LAs~ 247 (849)
..|-..+.++..- .|.+|.+.-....-.|.......+ . . -+--|.+.-|+|.-.. +--.
T Consensus 181 NsD~et~lSaDdL--------------rINLWnl~i~D~sFnIVDiKP~nm-e---e--LteVItSaeFhp~~cn~fmYS 240 (460)
T COG5170 181 NSDKETLLSADDL--------------RINLWNLEIIDGSFNIVDIKPHNM-E---E--LTEVITSAEFHPEMCNVFMYS 240 (460)
T ss_pred cCchheeeeccce--------------eeeeccccccCCceEEEeccCccH-H---H--HHHHHhhcccCHhHcceEEEe
Confidence 9999999876333 278898754311111221110000 0 0 1225677888886544 4456
Q ss_pred eCCCcEEEEecCCCccccccccc-ccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecCCcccc
Q 003087 248 DTNGCLYIFEMDKDNFSLSKFAC-GERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSGLKVK 325 (849)
Q Consensus 248 s~Dgtv~LWd~~~~~~~l~~~~~-~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~~~~l~ 325 (849)
+..|+|+|=|+.........-.. ..+.+ ++...+.. +....|.++-|++.|++++++.=-+|+|||+...++..
T Consensus 241 sSkG~Ikl~DlRq~alcdn~~klfe~~~D-~v~~~ff~---eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pi 315 (460)
T COG5170 241 SSKGEIKLNDLRQSALCDNSKKLFELTID-GVDVDFFE---EIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPI 315 (460)
T ss_pred cCCCcEEehhhhhhhhccCchhhhhhccC-cccchhHH---HHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCc
Confidence 67899999998733211111111 11111 11111111 12346889999999999999988999999998766543
No 270
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.16 E-value=3.1e-05 Score=81.31 Aligned_cols=277 Identities=13% Similarity=0.180 Sum_probs=145.9
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcce---eeeeecC-----------CCCEEEEEECCCCC---EEE
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPC---GIFNCTG-----------LGASIYGAWSESHD---VLG 70 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~---~~~~~~~-----------~~~v~~vafSPDG~---~LA 70 (849)
.-+.|.+|-|.-.|.|||+|. +|.|.++-....++-.. ..++.+. ...|..+.|--+++ +|.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 346789999999999999996 67888885433221111 1122110 23466788877664 454
Q ss_pred EEeCCCcEEEEecCCccceeccc---------------------------ccc-------------cccccEEEEEecCC
Q 003087 71 IVDDTHTVYFFKANGEEITRFTN---------------------------KHL-------------KVSLPIIGLIAQDE 110 (849)
Q Consensus 71 s~~~dgtIrlWd~~g~~~~~l~~---------------------------~~~-------------~~~~~V~~l~fs~~ 110 (849)
+ ..|.||+||.+-.+.+..... +|. .+...|.++.|..|
T Consensus 105 s-tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 105 S-TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred e-cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 4 567899999874321111000 000 01122445555332
Q ss_pred cccccccceeEEEEeCCCcEEEEEecC-CCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccC
Q 003087 111 TDVQRSCLCSFTVFTSDGFLHQIEISQ-DPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSS 189 (849)
Q Consensus 111 ~~~~~s~~~~~~~~s~Dg~v~lw~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~ 189 (849)
.. +++...|=.|.+|++.- +++-.+.. + .+-.+. ....-|++..|||.-+.+.-=++.+
T Consensus 184 ~e--------t~lSaDdLrINLWnl~i~D~sFnIVD--i--KP~nme-eLteVItSaeFhp~~cn~fmYSsSk------- 243 (460)
T COG5170 184 KE--------TLLSADDLRINLWNLEIIDGSFNIVD--I--KPHNME-ELTEVITSAEFHPEMCNVFMYSSSK------- 243 (460)
T ss_pred hh--------eeeeccceeeeeccccccCCceEEEe--c--cCccHH-HHHHHHhhcccCHhHcceEEEecCC-------
Confidence 21 22223445567777642 11111100 0 000000 1123589999999988664333332
Q ss_pred CCCCCceeeEEEecCCc---Ccccceecccccee-eccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccc
Q 003087 190 GNSGPCCISLWRRCHNL---ELEQLYTTQIEGLY-CEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSL 265 (849)
Q Consensus 190 ~~~G~~~I~lW~~~~~~---~~~~l~~~~~~~~~-~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l 265 (849)
|. |++-|+..+. ....+...+..+.- ..+.+ -...|..+.|||.|+++++-+. -+|+|||+......+
T Consensus 244 ---G~--Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~e--ivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pi 315 (460)
T COG5170 244 ---GE--IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEE--IVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPI 315 (460)
T ss_pred ---Cc--EEehhhhhhhhccCchhhhhhccCcccchhHHH--HhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCc
Confidence 43 7887765320 00011111111100 00011 2347788999999999997654 589999998776567
Q ss_pred cccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEE
Q 003087 266 SKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMID 317 (849)
Q Consensus 266 ~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwd 317 (849)
++.+.+.+....+.+...++ ....-..++||.|.. +++|+.++..-++-
T Consensus 316 kTi~~h~~l~~~l~d~YEnD---aifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 316 KTIPMHCDLMDELNDVYEND---AIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred eeechHHHHHHHHHhhhhcc---ceeeeEEEEecCCcccccccccccceeeec
Confidence 77665544333332222322 112235689998764 77888888777765
No 271
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.15 E-value=0.00031 Score=85.55 Aligned_cols=213 Identities=14% Similarity=0.159 Sum_probs=124.4
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccce
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEIT 89 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~ 89 (849)
+.|.++.|-.|+..+.++. +|.|.+-+.........|. -.++|.+.+||||++++|.+..++|+-+=+-+=..+.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~----vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGN----VDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeee----ccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchh
Confidence 4788888888998887775 5777666654321111111 1568999999999999999999999866433100000
Q ss_pred --ecc------ccccccc--c---cE-------------------EEEEecC-Cccccccccee-EEEE----eCC-CcE
Q 003087 90 --RFT------NKHLKVS--L---PI-------------------IGLIAQD-ETDVQRSCLCS-FTVF----TSD-GFL 130 (849)
Q Consensus 90 --~l~------~~~~~~~--~---~V-------------------~~l~fs~-~~~~~~s~~~~-~~~~----s~D-g~v 130 (849)
.+. ..+..+. . .. ..+...+ +....|.+++. |++. ..+ ..|
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI 224 (1265)
T ss_pred ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence 000 0000000 0 00 0111111 22356777764 4442 233 689
Q ss_pred EEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCccc
Q 003087 131 HQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQ 210 (849)
Q Consensus 131 ~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~ 210 (849)
++||-. |...++.+ +.. .-=.+++|-|.|.++|+...... .+ .|.++..+|-...+-
T Consensus 225 rV~drE-g~Lns~se------~~~------~l~~~LsWkPsgs~iA~iq~~~s--------d~--~IvffErNGL~hg~f 281 (1265)
T KOG1920|consen 225 RVYDRE-GALNSTSE------PVE------GLQHSLSWKPSGSLIAAIQCKTS--------DS--DIVFFERNGLRHGEF 281 (1265)
T ss_pred EEeccc-chhhcccC------ccc------ccccceeecCCCCeEeeeeecCC--------CC--cEEEEecCCcccccc
Confidence 999976 44433322 000 11267899999999998876541 12 378888877322111
Q ss_pred ceeccccceeeccCCCccccccceEEEccCCCEEEE---EeCCCcEEEEecCCC
Q 003087 211 LYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVAT---SDTNGCLYIFEMDKD 261 (849)
Q Consensus 211 l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs---~s~Dgtv~LWd~~~~ 261 (849)
... -+. ....|..++|+.++.+||. ......|++|-+.+-
T Consensus 282 ~l~--------~p~---de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 282 VLP--------FPL---DEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ccC--------Ccc---cccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 100 011 2345899999999999998 555666999988764
No 272
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.15 E-value=6e-05 Score=84.90 Aligned_cols=196 Identities=13% Similarity=0.156 Sum_probs=132.5
Q ss_pred cCCCCeEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCcc-ceeccc----
Q 003087 19 SPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEE-ITRFTN---- 93 (849)
Q Consensus 19 SPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~-~~~l~~---- 93 (849)
.|...++.+|++..|.-++++.+ .-+..+.. ..+.++++..+|-..+||+|+.+|+|.+||...+. +.++..
T Consensus 143 ~~scDly~~gsg~evYRlNLEqG--rfL~P~~~-~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v 219 (703)
T KOG2321|consen 143 KPSCDLYLVGSGSEVYRLNLEQG--RFLNPFET-DSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSV 219 (703)
T ss_pred CCCccEEEeecCcceEEEEcccc--cccccccc-ccccceeeeecCccceEEecccCceEEEecchhhhhheeeeccccc
Confidence 47788888888888877777632 21222221 25788999999999999999999999999986432 222211
Q ss_pred --ccc-cccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcC
Q 003087 94 --KHL-KVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHP 170 (849)
Q Consensus 94 --~~~-~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsP 170 (849)
+.+ +....|.++.|++++. ++++++.+|.+-++|+.+....-. . .| .+.-.|..++|-+
T Consensus 220 ~s~pg~~~~~svTal~F~d~gL-------~~aVGts~G~v~iyDLRa~~pl~~-k----dh------~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 220 NSHPGGDAAPSVTALKFRDDGL-------HVAVGTSTGSVLIYDLRASKPLLV-K----DH------GYELPIKKLDWQD 281 (703)
T ss_pred CCCccccccCcceEEEecCCce-------eEEeeccCCcEEEEEcccCCceee-c----cc------CCccceeeecccc
Confidence 111 1124588999988765 367779999999999986443111 0 00 1223699999988
Q ss_pred CCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCC
Q 003087 171 ELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTN 250 (849)
Q Consensus 171 dg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~D 250 (849)
.+..=.+.+.|.. .++||+...+. ++.+.. .+..+..+.+=|++-++.+|-.+
T Consensus 282 ~~~q~~v~S~Dk~------------~~kiWd~~~Gk---~~asiE------------pt~~lND~C~~p~sGm~f~Ane~ 334 (703)
T KOG2321|consen 282 TDQQNKVVSMDKR------------ILKIWDECTGK---PMASIE------------PTSDLNDFCFVPGSGMFFTANES 334 (703)
T ss_pred cCCCceEEecchH------------HhhhcccccCC---ceeecc------------ccCCcCceeeecCCceEEEecCC
Confidence 7443334455642 38999988753 222111 22358899999999999999999
Q ss_pred CcEEEEecCCCc
Q 003087 251 GCLYIFEMDKDN 262 (849)
Q Consensus 251 gtv~LWd~~~~~ 262 (849)
+.+..+=++..+
T Consensus 335 ~~m~~yyiP~LG 346 (703)
T KOG2321|consen 335 SKMHTYYIPSLG 346 (703)
T ss_pred CcceeEEccccC
Confidence 999988888654
No 273
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.14 E-value=0.00031 Score=78.07 Aligned_cols=121 Identities=16% Similarity=0.174 Sum_probs=70.1
Q ss_pred eCCCcEEEEEecCCCCcccccccccCCcceec----cccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEE
Q 003087 125 TSDGFLHQIEISQDPSASISSASASSSGLTLR----RQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLW 200 (849)
Q Consensus 125 s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW 200 (849)
++.|+|.+.|++....... . .+ ...++. +-.+.++.-+++||||+.+.++...+ ..|+....| ..|.++
T Consensus 212 s~eG~V~~id~~~~~~~~~-~-~~--~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~--~~~thk~~~-~~V~Vi 284 (352)
T TIGR02658 212 TYTGKIFQIDLSSGDAKFL-P-AI--EAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQR--AKWTHKTAS-RFLFVV 284 (352)
T ss_pred ecCCeEEEEecCCCcceec-c-ee--eeccccccccccCCCcceeEEEcCCCCEEEEEecCC--ccccccCCC-CEEEEE
Confidence 6669999999765432111 0 00 000111 11234556699999999998855432 112221222 246666
Q ss_pred EecCCcCcccceeccccceeeccCCCccccccceEEEccCCC-EEEEEe-CCCcEEEEecCCCccccccc
Q 003087 201 RRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGK-FVATSD-TNGCLYIFEMDKDNFSLSKF 268 (849)
Q Consensus 201 ~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~-~LAs~s-~Dgtv~LWd~~~~~~~l~~~ 268 (849)
|..+.. .+. .+ .-| ..++.|+|||||+ +|.+.. .+++|.+.|+.+.+. ++..
T Consensus 285 D~~t~k---vi~------~i--~vG----~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~-i~~i 338 (352)
T TIGR02658 285 DAKTGK---RLR------KI--ELG----HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE-LSSV 338 (352)
T ss_pred ECCCCe---EEE------EE--eCC----CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE-Eeee
Confidence 655431 111 11 112 3778999999999 888777 689999999998754 4443
No 274
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=0.0004 Score=78.15 Aligned_cols=73 Identities=11% Similarity=0.146 Sum_probs=52.9
Q ss_pred EEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCC-----------CcEEEEe
Q 003087 14 VSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDT-----------HTVYFFK 82 (849)
Q Consensus 14 ~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~d-----------gtIrlWd 82 (849)
+-|.|||-|.||++-.-..|.+|-..+ ++. +.+| -|+.|.-+.|||.-++|++=+.. ..+.|||
T Consensus 214 tyv~wSP~GTYL~t~Hk~GI~lWGG~~-f~r-~~RF---~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQGIALWGGES-FDR-IQRF---YHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeEEecCCceEEEEEeccceeeecCcc-HHH-HHhc---cCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 358899999999988777899995322 211 2222 26889999999999999986532 5689999
Q ss_pred cC-Cccceec
Q 003087 83 AN-GEEITRF 91 (849)
Q Consensus 83 ~~-g~~~~~l 91 (849)
+. |.....+
T Consensus 289 I~tG~lkrsF 298 (698)
T KOG2314|consen 289 IATGLLKRSF 298 (698)
T ss_pred ccccchhcce
Confidence 86 6554433
No 275
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=0.00032 Score=79.23 Aligned_cols=200 Identities=16% Similarity=0.209 Sum_probs=122.6
Q ss_pred cccceEEEEEcCCCCe--EEEE---eC---CeEEEEecCC-CCCcceeeeeecCCCCEEEEEECCCCCEE---EEEeCC-
Q 003087 9 KTKKQVSLFISPRGER--VAVA---AV---NQVTILQKDD-DYQEPCGIFNCTGLGASIYGAWSESHDVL---GIVDDT- 75 (849)
Q Consensus 9 ~~~~v~slafSPdG~~--LAsa---s~---~~i~iw~~~~-~~~~~~~~~~~~~~~~v~~vafSPDG~~L---As~~~d- 75 (849)
+..+|..+++||-++- ||+= ++ ..++||...- ....+++.-+.- ...=..+.|.+-|+-| |+.+-|
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF-kadkvqm~WN~~gt~LLvLastdVDk 242 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF-KADKVQMKWNKLGTALLVLASTDVDK 242 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc-ccceeEEEeccCCceEEEEEEEeecC
Confidence 4478999999998664 4432 23 3799997531 111111111100 1222468898888743 334334
Q ss_pred --------CcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEE-eC-CCcEEEEEecCCCCccccc
Q 003087 76 --------HTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVF-TS-DGFLHQIEISQDPSASISS 145 (849)
Q Consensus 76 --------gtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~-s~-Dg~v~lw~~~~~~~~~~~~ 145 (849)
.++++.+++|+.+..-... .++|.++.|++++. +|+++ |+ -..+.++|+.-... +
T Consensus 243 tn~SYYGEq~Lyll~t~g~s~~V~L~k----~GPVhdv~W~~s~~-------EF~VvyGfMPAkvtifnlr~~~v---~- 307 (566)
T KOG2315|consen 243 TNASYYGEQTLYLLATQGESVSVPLLK----EGPVHDVTWSPSGR-------EFAVVYGFMPAKVTIFNLRGKPV---F- 307 (566)
T ss_pred CCccccccceEEEEEecCceEEEecCC----CCCceEEEECCCCC-------EEEEEEecccceEEEEcCCCCEe---E-
Confidence 4799999987764332222 36899999988543 24332 22 23567777653222 1
Q ss_pred ccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCC
Q 003087 146 ASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKG 225 (849)
Q Consensus 146 ~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g 225 (849)
.|. ...=+++-|+|.|++|+.+|.++- .|+ |-+||+.... .|....
T Consensus 308 --------df~---egpRN~~~fnp~g~ii~lAGFGNL--------~G~--mEvwDv~n~K---~i~~~~---------- 353 (566)
T KOG2315|consen 308 --------DFP---EGPRNTAFFNPHGNIILLAGFGNL--------PGD--MEVWDVPNRK---LIAKFK---------- 353 (566)
T ss_pred --------eCC---CCCccceEECCCCCEEEEeecCCC--------CCc--eEEEeccchh---hccccc----------
Confidence 111 223589999999999999998852 255 8999997742 121111
Q ss_pred CccccccceEEEccCCCEEEEEeC------CCcEEEEecCCC
Q 003087 226 HEVQLAHPKVLISPQGKFVATSDT------NGCLYIFEMDKD 261 (849)
Q Consensus 226 ~~h~~~V~~vafSPDG~~LAs~s~------Dgtv~LWd~~~~ 261 (849)
-..-.-+.|||||+++.|+.+ |+.++||+..+.
T Consensus 354 ---a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 354 ---AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred ---cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 112335899999999999876 688999999875
No 276
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.08 E-value=0.0011 Score=82.84 Aligned_cols=276 Identities=18% Similarity=0.243 Sum_probs=143.7
Q ss_pred ceEEEEEcCCCCeEEEEe----CC---eEEEEecCCCCCcceeeeeecC-CCCEEEEEECCCCCEEEEEeC---CCcEEE
Q 003087 12 KQVSLFISPRGERVAVAA----VN---QVTILQKDDDYQEPCGIFNCTG-LGASIYGAWSESHDVLGIVDD---THTVYF 80 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas----~~---~i~iw~~~~~~~~~~~~~~~~~-~~~v~~vafSPDG~~LAs~~~---dgtIrl 80 (849)
.-..|+|-.||+++|+.+ .+ .++||+.++ ..... .+. .+--.+++|.|.|.+||+.-. ...|-+
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG---~L~st--SE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvF 285 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREG---ELQST--SEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVF 285 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCc---eEEec--cccCCCccCCccCCCCCCEEEEEEEcCCCcEEEE
Confidence 446899999999999875 22 688998542 21111 111 122257999999999999865 456889
Q ss_pred EecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccC
Q 003087 81 FKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFP 160 (849)
Q Consensus 81 Wd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (849)
|..+|-....+.-........|..|.|+.++.. ++++..|. |++|..+.-.. ++.+ ...+.. .
T Consensus 286 fErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~i-------LAv~~~~~-vqLWt~~NYHW--YLKq-----ei~~~~--~ 348 (928)
T PF04762_consen 286 FERNGLRHGEFTLRFDPEEEKVIELAWNSDSEI-------LAVWLEDR-VQLWTRSNYHW--YLKQ-----EIRFSS--S 348 (928)
T ss_pred EecCCcEeeeEecCCCCCCceeeEEEECCCCCE-------EEEEecCC-ceEEEeeCCEE--EEEE-----EEEccC--C
Confidence 998885432222111011235788998877654 44444444 99998764221 1111 111111 1
Q ss_pred CceEEEEEcCCCce-EEEEecCCCCccccCCCCCCceeeEEEecCCcCc-----cc--ceeccccc--eee---ccCC--
Q 003087 161 QNVICTDYHPELSL-LSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLEL-----EQ--LYTTQIEG--LYC---EPKG-- 225 (849)
Q Consensus 161 ~~V~svafsPdg~l-Las~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~-----~~--l~~~~~~~--~~~---~~~g-- 225 (849)
..+..+.|||.-.+ |.+....+.... .--.|++..+... .. +.++...- .|+ .|+.
T Consensus 349 ~~~~~~~Wdpe~p~~L~v~t~~g~~~~---------~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs 419 (928)
T PF04762_consen 349 ESVNFVKWDPEKPLRLHVLTSNGQYEI---------YDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMS 419 (928)
T ss_pred CCCCceEECCCCCCEEEEEecCCcEEE---------EEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHh
Confidence 23566999996443 444444332100 0113554432100 00 01111000 000 0000
Q ss_pred ---CccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCC
Q 003087 226 ---HEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDN 302 (849)
Q Consensus 226 ---~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~ 302 (849)
..-...|..|+|+|++..+|+...||+|.+|..+.....-..-+. .....................+..++|..++
T Consensus 420 ~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (928)
T PF04762_consen 420 SYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPK-LLSSISLDSMDISDSELPLGSLRQLAWLNDD 498 (928)
T ss_pred ceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcc-hhhhcccccccccccccccccEEEEEEeCCC
Confidence 002357999999999999999999999999987654211000000 0000000000000000123457889999888
Q ss_pred EEEEE-Ee---CCcEEEEEec
Q 003087 303 ILILA-RK---SSIITMIDVL 319 (849)
Q Consensus 303 ~la~a-~~---dgti~lwdl~ 319 (849)
.+++. .. .+.+.++++.
T Consensus 499 ~~~~~~~~~~~~~~i~~~~~~ 519 (928)
T PF04762_consen 499 TLLVLSDSDSNQSKIVLVDID 519 (928)
T ss_pred EEEEEEecCcccceEEEEEec
Confidence 75433 33 2467788774
No 277
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.05 E-value=5.9e-06 Score=61.12 Aligned_cols=30 Identities=20% Similarity=0.514 Sum_probs=29.3
Q ss_pred cccccceEEEccCCCEEEEEeCCCcEEEEe
Q 003087 228 VQLAHPKVLISPQGKFVATSDTNGCLYIFE 257 (849)
Q Consensus 228 h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd 257 (849)
|...|++|+|+|++++|||++.||+|++||
T Consensus 10 h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 10 HSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 889999999999999999999999999997
No 278
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.04 E-value=2.5e-05 Score=97.39 Aligned_cols=193 Identities=11% Similarity=0.135 Sum_probs=130.5
Q ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEEecC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEE
Q 003087 54 LGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQ 132 (849)
Q Consensus 54 ~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~l 132 (849)
-..|+++.=.|--.+-.+|+.||.|++|... |..+..... . + ...|..++|+..|- .|.+...||.+.+
T Consensus 2208 v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt-~-g-~s~vtr~~f~~qGn-------k~~i~d~dg~l~l 2277 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT-A-G-NSRVTRSRFNHQGN-------KFGIVDGDGDLSL 2277 (2439)
T ss_pred cCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeec-c-C-cchhhhhhhcccCC-------ceeeeccCCceee
Confidence 3467777778888999999999999999986 554443322 1 1 15677788876432 2555689999999
Q ss_pred EEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccce
Q 003087 133 IEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLY 212 (849)
Q Consensus 133 w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~ 212 (849)
|.++..... +-+ -|..+...++|-. .++|++|.... .+ .+.+||..-....
T Consensus 2278 ~q~~pk~~~------------s~q-chnk~~~Df~Fi~--s~~~tag~s~d--------~~--n~~lwDtl~~~~~---- 2328 (2439)
T KOG1064|consen 2278 WQASPKPYT------------SWQ-CHNKALSDFRFIG--SLLATAGRSSD--------NR--NVCLWDTLLPPMN---- 2328 (2439)
T ss_pred cccCCccee------------ccc-cCCccccceeeee--hhhhccccCCC--------CC--cccchhcccCccc----
Confidence 998732211 111 2334567777765 67778775531 13 3789987543211
Q ss_pred eccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCC
Q 003087 213 TTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISD 292 (849)
Q Consensus 213 ~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (849)
.++ +.- |..++..+++-|.-|+|.|||.+|.|+|||+...+. .+.|+.
T Consensus 2329 -----s~v--~~~--H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql-~h~~~~---------------------- 2376 (2439)
T KOG1064|consen 2329 -----SLV--HTC--HDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQL-RHTFQA---------------------- 2376 (2439)
T ss_pred -----cee--eee--cCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHH-HHHhhh----------------------
Confidence 111 122 788999999999999999999999999999986533 333321
Q ss_pred cEEEEEecCCEEEEEEeCCcEEEEEecCCc
Q 003087 293 ITDFAWWSDNILILARKSSIITMIDVLSGL 322 (849)
Q Consensus 293 v~~vaws~D~~la~a~~dgti~lwdl~~~~ 322 (849)
|--...++.++..|+++||++..-.
T Consensus 2377 -----~~~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2377 -----LDTREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred -----hhhhheeeccCcccceEEEEccccc
Confidence 1112246788999999999998764
No 279
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.0005 Score=80.62 Aligned_cols=187 Identities=12% Similarity=0.152 Sum_probs=115.8
Q ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEE
Q 003087 55 GASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIE 134 (849)
Q Consensus 55 ~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~ 134 (849)
..+.+.+++ +++||-|..+|.|++.+.+|+. .+...+ +.. ...+. .+++|+.||+|.+-.
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~~----s~~----------~~~Ge---y~asCS~DGkv~I~s 99 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFDH----SSS----------ILEGE---YVASCSDDGKVVIGS 99 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc-cccccc----ccc----------ccCCc---eEEEecCCCcEEEee
Confidence 345667776 8999999999999999999875 222111 110 11222 588999999999887
Q ss_pred ecCCCCcccccccccCCcceeccccCCceEEEEEcCC-----CceEEEEecCCCCccccCCCCCCceeeEEEe--cCCcC
Q 003087 135 ISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPE-----LSLLSVVSNTDTSSLTSSGNSGPCCISLWRR--CHNLE 207 (849)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPd-----g~lLas~g~d~t~~~~~~~~~G~~~I~lW~~--~~~~~ 207 (849)
+-++..-..+ .+..++.+|++||| .+.+++||..+ +-+... .+..+
T Consensus 100 l~~~~~~~~~-------------df~rpiksial~Pd~~~~~sk~fv~GG~ag--------------lvL~er~wlgnk~ 152 (846)
T KOG2066|consen 100 LFTDDEITQY-------------DFKRPIKSIALHPDFSRQQSKQFVSGGMAG--------------LVLSERNWLGNKD 152 (846)
T ss_pred ccCCccceeE-------------ecCCcceeEEeccchhhhhhhheeecCcce--------------EEEehhhhhcCcc
Confidence 7665542111 23457999999999 45666665543 323221 11110
Q ss_pred cccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCC
Q 003087 208 LEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRT 287 (849)
Q Consensus 208 ~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 287 (849)
.+ .++. -.+.|.++.| -|+++|=++.+| |+++|+.+.+. +...+... .. ..|+
T Consensus 153 --~v-------~l~~-----~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~-l~~i~~p~--~~-----~R~e-- 205 (846)
T KOG2066|consen 153 --SV-------VLSE-----GEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQR-LTNIPPPS--QS-----VRPE-- 205 (846)
T ss_pred --ce-------eeec-----CccceEEEEe--cCcEEEEecCCC-cEEEeccccce-eeccCCCC--CC-----CCcc--
Confidence 11 0111 1358999999 999999998887 68999998754 32222110 00 1111
Q ss_pred CCCCCcEEEEEecCCEEEEEEeCCcEEEEEec
Q 003087 288 KPISDITDFAWWSDNILILARKSSIITMIDVL 319 (849)
Q Consensus 288 ~~~~~v~~vaws~D~~la~a~~dgti~lwdl~ 319 (849)
.-...+.|.++.+++ .++.-+|+|..+.
T Consensus 206 ---~fpphl~W~~~~~LV-IGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 206 ---LFPPHLHWQDEDRLV-IGWGDSVKICSIK 233 (846)
T ss_pred ---cCCCceEecCCCeEE-EecCCeEEEEEEe
Confidence 113457787777664 4567789999988
No 280
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.99 E-value=0.00032 Score=78.36 Aligned_cols=243 Identities=16% Similarity=0.136 Sum_probs=137.7
Q ss_pred cceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCC--------------
Q 003087 11 KKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTH-------------- 76 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dg-------------- 76 (849)
-.+..+.+||.|++||+..-..|++|.... .+.+..--++.|..+.|||.|++|.+=+.-+
T Consensus 33 ~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~-----~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 33 WPVAYVSESPLGTYLFSEHAAGVECWGGPS-----KAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cchhheeecCcchheehhhccceEEccccc-----hhheeeeecCCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 367889999999999988777899997432 1223211268899999999999999876543
Q ss_pred -cEEEEecCCccc-eecccccccccccEE-EEEecC-CcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCc
Q 003087 77 -TVYFFKANGEEI-TRFTNKHLKVSLPII-GLIAQD-ETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSG 152 (849)
Q Consensus 77 -tIrlWd~~g~~~-~~l~~~~~~~~~~V~-~l~fs~-~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~ 152 (849)
.+.+||..++.+ ....... .....+ -+.|+- |...+. + ....+++.++ ++.... +..
T Consensus 108 n~~~vwd~~sg~iv~sf~~~~--q~~~~Wp~~k~s~~D~y~AR-----v----v~~sl~i~e~-t~n~~~-------~p~ 168 (561)
T COG5354 108 NNVFVWDIASGMIVFSFNGIS--QPYLGWPVLKFSIDDKYVAR-----V----VGSSLYIHEI-TDNIEE-------HPF 168 (561)
T ss_pred CceeEEeccCceeEeeccccC--Ccccccceeeeeecchhhhh-----h----ccCeEEEEec-CCcccc-------Cch
Confidence 488999875543 3322211 111122 244432 221111 1 1234778887 332211 001
Q ss_pred ceeccccCCceEEEEEcCCCc--eEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCcccc
Q 003087 153 LTLRRQFPQNVICTDYHPELS--LLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQL 230 (849)
Q Consensus 153 ~~l~~~~~~~V~svafsPdg~--lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~ 230 (849)
..++ +.+|....|||.|. .||.=.-..+ ++ .|.+++|.+-.+. .+.+- .++ . .
T Consensus 169 ~~lr---~~gi~dFsisP~~n~~~la~~tPEk~------~k--pa~~~i~sIp~~s---~l~tk---~lf-k-------~ 223 (561)
T COG5354 169 KNLR---PVGILDFSISPEGNHDELAYWTPEKL------NK--PAMVRILSIPKNS---VLVTK---NLF-K-------V 223 (561)
T ss_pred hhcc---ccceeeEEecCCCCCceEEEEccccC------CC--CcEEEEEEccCCC---eeeee---eeE-e-------e
Confidence 1222 35799999999753 3332111110 22 2458889876431 11110 111 1 1
Q ss_pred ccceEEEccCCCEEEEEeC-----------CCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEe
Q 003087 231 AHPKVLISPQGKFVATSDT-----------NGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWW 299 (849)
Q Consensus 231 ~V~~vafSPDG~~LAs~s~-----------Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws 299 (849)
.-..+-|.+.|++|...-. ..++.|.++.... ++.. .+-.++|.+++|.
T Consensus 224 ~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-----i~V~---------------~~~~~pVhdf~W~ 283 (561)
T COG5354 224 SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-----IPVE---------------KDLKDPVHDFTWE 283 (561)
T ss_pred cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-----ccee---------------ccccccceeeeec
Confidence 1236888899988665321 1345666665321 1110 1124679999999
Q ss_pred cCCE---EEEEEeCCcEEEEEecCCc
Q 003087 300 SDNI---LILARKSSIITMIDVLSGL 322 (849)
Q Consensus 300 ~D~~---la~a~~dgti~lwdl~~~~ 322 (849)
|++. ++.|...-++.++|+.++-
T Consensus 284 p~S~~F~vi~g~~pa~~s~~~lr~Nl 309 (561)
T COG5354 284 PLSSRFAVISGYMPASVSVFDLRGNL 309 (561)
T ss_pred ccCCceeEEecccccceeecccccce
Confidence 9873 5566788889999988764
No 281
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.96 E-value=0.00033 Score=79.10 Aligned_cols=197 Identities=17% Similarity=0.177 Sum_probs=110.5
Q ss_pred CEE-EEEeCCCcEEEEecCC-ccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccc
Q 003087 67 DVL-GIVDDTHTVYFFKANG-EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASIS 144 (849)
Q Consensus 67 ~~L-As~~~dgtIrlWd~~g-~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~ 144 (849)
.++ ++-..+|+|.|+|... +.+.++..+. ..-.++.|+||+. .+++++.||.|.++|+.+++.....
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~----~~h~~~~~s~Dgr-------~~yv~~rdg~vsviD~~~~~~v~~i 74 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGG----APHAGLKFSPDGR-------YLYVANRDGTVSVIDLATGKVVATI 74 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-ST----TEEEEEE-TT-SS-------EEEEEETTSEEEEEETTSSSEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCC----CceeEEEecCCCC-------EEEEEcCCCeEEEEECCcccEEEEE
Confidence 344 4555689999999874 4455554321 1123577888654 2666789999999999877654322
Q ss_pred cccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccC
Q 003087 145 SASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPK 224 (849)
Q Consensus 145 ~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~ 224 (849)
+.+ ..-.++++||||++++++.... + .+.++|..+. +.+......+.- ..
T Consensus 75 -----------~~G--~~~~~i~~s~DG~~~~v~n~~~----------~--~v~v~D~~tl---e~v~~I~~~~~~--~~ 124 (369)
T PF02239_consen 75 -----------KVG--GNPRGIAVSPDGKYVYVANYEP----------G--TVSVIDAETL---EPVKTIPTGGMP--VD 124 (369)
T ss_dssp -----------E-S--SEEEEEEE--TTTEEEEEEEET----------T--EEEEEETTT-----EEEEEE--EE---TT
T ss_pred -----------ecC--CCcceEEEcCCCCEEEEEecCC----------C--ceeEeccccc---cceeeccccccc--cc
Confidence 112 2468899999999998876543 2 4888887653 222211111100 00
Q ss_pred CCccccccceEEEccCCC-EEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE
Q 003087 225 GHEVQLAHPKVLISPQGK-FVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI 303 (849)
Q Consensus 225 g~~h~~~V~~vafSPDG~-~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~ 303 (849)
+ ....+.+|..||.+. ++++.-..|.|-+=|...... +..-. +. ....+.+..|.||++
T Consensus 125 ~--~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~-~~~~~------------i~-----~g~~~~D~~~dpdgr 184 (369)
T PF02239_consen 125 G--PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN-LKVTT------------IK-----VGRFPHDGGFDPDGR 184 (369)
T ss_dssp T--S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC-EEEEE------------EE-------TTEEEEEE-TTSS
T ss_pred c--cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc-cceee------------ec-----ccccccccccCcccc
Confidence 1 123567888899999 555555557665555544321 11100 00 112367899999997
Q ss_pred EE--EEEeCCcEEEEEecCCccc
Q 003087 304 LI--LARKSSIITMIDVLSGLKV 324 (849)
Q Consensus 304 la--~a~~dgti~lwdl~~~~~l 324 (849)
.. .+..++.|-++|..+++.+
T Consensus 185 y~~va~~~sn~i~viD~~~~k~v 207 (369)
T PF02239_consen 185 YFLVAANGSNKIAVIDTKTGKLV 207 (369)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEE
T ss_pred eeeecccccceeEEEeeccceEE
Confidence 43 3456778999998887643
No 282
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.92 E-value=0.00012 Score=79.78 Aligned_cols=79 Identities=14% Similarity=0.202 Sum_probs=62.3
Q ss_pred cccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEE
Q 003087 228 VQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILA 307 (849)
Q Consensus 228 h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a 307 (849)
|-..+..|+||||+++|.|++.|+.|++=..+..- .+..|.+ +|..-|..++--++.-|+++
T Consensus 150 hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f-~Iesfcl-----------------GH~eFVS~isl~~~~~LlS~ 211 (390)
T KOG3914|consen 150 HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF-VIESFCL-----------------GHKEFVSTISLTDNYLLLSG 211 (390)
T ss_pred hhhhhheeeecCCCCEEEEecCCceEEEEecCccc-chhhhcc-----------------ccHhheeeeeeccCceeeec
Confidence 77889999999999999999999999986666432 2455543 23344677776566668999
Q ss_pred EeCCcEEEEEecCCccc
Q 003087 308 RKSSIITMIDVLSGLKV 324 (849)
Q Consensus 308 ~~dgti~lwdl~~~~~l 324 (849)
+.|++|++||+.+|+++
T Consensus 212 sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 212 SGDKTLRLWDITSGKLL 228 (390)
T ss_pred CCCCcEEEEecccCCcc
Confidence 99999999999999966
No 283
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.90 E-value=2.2e-05 Score=58.00 Aligned_cols=30 Identities=17% Similarity=0.154 Sum_probs=28.3
Q ss_pred CCCCEEEEEECCCCCEEEEEeCCCcEEEEe
Q 003087 53 GLGASIYGAWSESHDVLGIVDDTHTVYFFK 82 (849)
Q Consensus 53 ~~~~v~~vafSPDG~~LAs~~~dgtIrlWd 82 (849)
+...|.+|+|+|++++||+|+.|++|++||
T Consensus 10 h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 10 HSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367899999999999999999999999997
No 284
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.89 E-value=0.00082 Score=74.44 Aligned_cols=177 Identities=15% Similarity=0.185 Sum_probs=120.3
Q ss_pred CCCeEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCC-cEEEEecCCccceeccccccccc
Q 003087 21 RGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTH-TVYFFKANGEEITRFTNKHLKVS 99 (849)
Q Consensus 21 dG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dg-tIrlWd~~g~~~~~l~~~~~~~~ 99 (849)
+|.++|..|-+++-|.+.-+++..++ .+.+.|+-..++-|+.-++.|..|| .+-++|..|.+..++.+..
T Consensus 331 ~Gd~ia~VSRGkaFi~~~~~~~~iqv-----~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~l---- 401 (668)
T COG4946 331 NGDYIALVSRGKAFIMRPWDGYSIQV-----GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDL---- 401 (668)
T ss_pred CCcEEEEEecCcEEEECCCCCeeEEc-----CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCc----
Confidence 79999999999888877544432222 2245699999999999999999999 8999999988777776544
Q ss_pred ccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEe
Q 003087 100 LPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVS 179 (849)
Q Consensus 100 ~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g 179 (849)
+.|.+|..++++.. ++++...+.+-+.|+++|...-+ . ++.+ .-|..++|||+++++|=+-
T Consensus 402 g~I~av~vs~dGK~-------~vvaNdr~el~vididngnv~~i-d----------kS~~-~lItdf~~~~nsr~iAYaf 462 (668)
T COG4946 402 GNIEAVKVSPDGKK-------VVVANDRFELWVIDIDNGNVRLI-D----------KSEY-GLITDFDWHPNSRWIAYAF 462 (668)
T ss_pred cceEEEEEcCCCcE-------EEEEcCceEEEEEEecCCCeeEe-c----------cccc-ceeEEEEEcCCceeEEEec
Confidence 35888888876542 33335556677778877664322 1 0111 2499999999999999875
Q ss_pred cCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeC
Q 003087 180 NTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDT 249 (849)
Q Consensus 180 ~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~ 249 (849)
-++-+ +..|+++|+.++. +.... .+. ..=++=||-|||++|.-.+.
T Consensus 463 P~gy~---------tq~Iklydm~~~K----iy~vT------T~t-----a~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 463 PEGYY---------TQSIKLYDMDGGK----IYDVT------TPT-----AYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred Cccee---------eeeEEEEecCCCe----EEEec------CCc-----ccccCcccCCCCcEEEEEec
Confidence 55311 1248999998752 21110 111 12346789999999877654
No 285
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.85 E-value=0.00069 Score=73.12 Aligned_cols=57 Identities=16% Similarity=0.243 Sum_probs=39.9
Q ss_pred EEEEcCCCCeEEEEe------CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEe
Q 003087 15 SLFISPRGERVAVAA------VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVD 73 (849)
Q Consensus 15 slafSPdG~~LAsas------~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~ 73 (849)
--+|||||++|-+.- .+.|-|||....+. .++.+..+|-+ =..+.|.|||++|++|.
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~-ri~E~~s~GIG-PHel~l~pDG~tLvVAN 117 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYR-RIGEFPSHGIG-PHELLLMPDGETLVVAN 117 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcE-EEeEecCCCcC-hhhEEEcCCCCEEEEEc
Confidence 468999999997762 24788999875553 34555433211 14688999999999885
No 286
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.80 E-value=0.003 Score=68.26 Aligned_cols=222 Identities=12% Similarity=0.107 Sum_probs=116.8
Q ss_pred ceEEEEEcC-CCCeEEEEe--CCeEEEEecCCCCCcceeeeee-cCCCCEEEEEECCCCCEEEEEeCC-----CcEEEEe
Q 003087 12 KQVSLFISP-RGERVAVAA--VNQVTILQKDDDYQEPCGIFNC-TGLGASIYGAWSESHDVLGIVDDT-----HTVYFFK 82 (849)
Q Consensus 12 ~v~slafSP-dG~~LAsas--~~~i~iw~~~~~~~~~~~~~~~-~~~~~v~~vafSPDG~~LAs~~~d-----gtIrlWd 82 (849)
+...++.+| ++..+|.|- +....++|..++ .....+.. .+.-..--.+|||||++|-+...| |.|-|||
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g--~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTG--QLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCC--ceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence 457889999 666677775 456778887653 23323321 111122357999999999987654 8899999
Q ss_pred cCCc--cceecccccccccccEEEEEecCCcccccccc-----------eeEEEEeCCCcEEEEEecCCCCccccccccc
Q 003087 83 ANGE--EITRFTNKHLKVSLPIIGLIAQDETDVQRSCL-----------CSFTVFTSDGFLHQIEISQDPSASISSASAS 149 (849)
Q Consensus 83 ~~g~--~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~-----------~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~ 149 (849)
+... .+-.+..+-.+ =..|.+.||+..+.-++ ..+.+-+-+..+-..|..+|.....
T Consensus 84 ~~~~~~ri~E~~s~GIG----PHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q------ 153 (305)
T PF07433_consen 84 AARGYRRIGEFPSHGIG----PHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQ------ 153 (305)
T ss_pred CcCCcEEEeEecCCCcC----hhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeee------
Confidence 9832 22222221100 01244455442111000 1122223344455555555543221
Q ss_pred CCcceec-cccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCcc
Q 003087 150 SSGLTLR-RQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEV 228 (849)
Q Consensus 150 ~~~~~l~-~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h 228 (849)
+.|. ..+..+|.-+++++||..+...=..+. - ....-.|-+++.... ++.+-... ......+
T Consensus 154 ---~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~--~----~~~~PLva~~~~g~~--~~~~~~p~--~~~~~l~---- 216 (305)
T PF07433_consen 154 ---VELPPDLHQLSIRHLAVDGDGTVAFAMQYQGD--P----GDAPPLVALHRRGGA--LRLLPAPE--EQWRRLN---- 216 (305)
T ss_pred ---eecCccccccceeeEEecCCCcEEEEEecCCC--C----CccCCeEEEEcCCCc--ceeccCCh--HHHHhhC----
Confidence 1121 134457999999999987643322210 0 000113445554432 11110000 0111222
Q ss_pred ccccceEEEccCCCEEEEEe-CCCcEEEEecCCCcc
Q 003087 229 QLAHPKVLISPQGKFVATSD-TNGCLYIFEMDKDNF 263 (849)
Q Consensus 229 ~~~V~~vafSPDG~~LAs~s-~Dgtv~LWd~~~~~~ 263 (849)
+.|-+|+|++||.++|..+ .-|.+.+||..++++
T Consensus 217 -~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~ 251 (305)
T PF07433_consen 217 -GYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRL 251 (305)
T ss_pred -CceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCE
Confidence 3677999999998876555 678999999998854
No 287
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.69 E-value=0.0011 Score=68.86 Aligned_cols=161 Identities=12% Similarity=0.058 Sum_probs=102.5
Q ss_pred eEEEEEcCCCCeEEEEeC-CeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC--Cccce
Q 003087 13 QVSLFISPRGERVAVAAV-NQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN--GEEIT 89 (849)
Q Consensus 13 v~slafSPdG~~LAsas~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~--g~~~~ 89 (849)
+.++++|||++++++.+| ..|-.+..++..-....+......+.--+..||......|++..||++-|||+. +....
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~ 240 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA 240 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence 789999999999999987 577777665432111221211112333578999999999999999999999985 44434
Q ss_pred ecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEc
Q 003087 90 RFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYH 169 (849)
Q Consensus 90 ~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafs 169 (849)
.+......++++|..+-|++.+..- -++..-.=+.+++.|..++...+.+. -....+..+..+.|.+-.|+
T Consensus 241 ~~sstrp~hnGa~R~c~Fsl~g~lD-----LLf~sEhfs~~hv~D~R~~~~~q~I~----i~~d~~~~~~tq~ifgt~f~ 311 (344)
T KOG4532|consen 241 EISSTRPHHNGAFRVCRFSLYGLLD-----LLFISEHFSRVHVVDTRNYVNHQVIV----IPDDVERKHNTQHIFGTNFN 311 (344)
T ss_pred hhcccCCCCCCceEEEEecCCCcce-----EEEEecCcceEEEEEcccCceeeEEe----cCcccccccccccccccccc
Confidence 3333323356789999999844321 12222334678889988765433221 00011223444568888899
Q ss_pred CCCceEEEEecCC
Q 003087 170 PELSLLSVVSNTD 182 (849)
Q Consensus 170 Pdg~lLas~g~d~ 182 (849)
.++....+...+.
T Consensus 312 ~~n~s~~v~~e~~ 324 (344)
T KOG4532|consen 312 NENESNDVKNELQ 324 (344)
T ss_pred CCCcccccccchh
Confidence 9888877665553
No 288
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.69 E-value=0.0021 Score=72.07 Aligned_cols=198 Identities=14% Similarity=0.186 Sum_probs=121.8
Q ss_pred ccceEEEEEcCCC--CeEEEE------eCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeC-------
Q 003087 10 TKKQVSLFISPRG--ERVAVA------AVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDD------- 74 (849)
Q Consensus 10 ~~~v~slafSPdG--~~LAsa------s~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~------- 74 (849)
...+...+|||-| ..||.= ...+++||...- ...+...+.- ...=..+-|.+.|++|.+--.
T Consensus 173 ~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~--~s~l~tk~lf-k~~~~qLkW~~~g~~ll~l~~t~~ksnK 249 (561)
T COG5354 173 PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPK--NSVLVTKNLF-KVSGVQLKWQVLGKYLLVLVMTHTKSNK 249 (561)
T ss_pred ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccC--CCeeeeeeeE-eecccEEEEecCCceEEEEEEEeeeccc
Confidence 4678889999964 456643 245888998652 2233222211 112257999999999875322
Q ss_pred ----CCcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEe--CCCcEEEEEecCCCCcccccccc
Q 003087 75 ----THTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFT--SDGFLHQIEISQDPSASISSASA 148 (849)
Q Consensus 75 ----dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s--~Dg~v~lw~~~~~~~~~~~~~~~ 148 (849)
..+++|.++++.-+.... +.-++|....|+|.+. +|++++ .+..+-++++... ...+
T Consensus 250 syfgesnLyl~~~~e~~i~V~~----~~~~pVhdf~W~p~S~-------~F~vi~g~~pa~~s~~~lr~N--l~~~---- 312 (561)
T COG5354 250 SYFGESNLYLLRITERSIPVEK----DLKDPVHDFTWEPLSS-------RFAVISGYMPASVSVFDLRGN--LRFY---- 312 (561)
T ss_pred ceeccceEEEEeecccccceec----cccccceeeeecccCC-------ceeEEecccccceeecccccc--eEEe----
Confidence 145777777755433221 1125788999888543 355554 3455666666532 1111
Q ss_pred cCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCcc
Q 003087 149 SSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEV 228 (849)
Q Consensus 149 ~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h 228 (849)
.....=+++-|||.+++++.+|.+++. | .|-+|++.+.. ... |.+ .|
T Consensus 313 ---------~Pe~~rNT~~fsp~~r~il~agF~nl~--------g--ni~i~~~~~rf----~~~----~~~---~~--- 359 (561)
T COG5354 313 ---------FPEQKRNTIFFSPHERYILFAGFDNLQ--------G--NIEIFDPAGRF----KVA----GAF---NG--- 359 (561)
T ss_pred ---------cCCcccccccccCcccEEEEecCCccc--------c--ceEEeccCCce----EEE----EEe---ec---
Confidence 111234788999999999999999742 3 48899988752 111 111 11
Q ss_pred ccccceEEEccCCCEEEEEe------CCCcEEEEecCCC
Q 003087 229 QLAHPKVLISPQGKFVATSD------TNGCLYIFEMDKD 261 (849)
Q Consensus 229 ~~~V~~vafSPDG~~LAs~s------~Dgtv~LWd~~~~ 261 (849)
....-+.|||||+++-+.- .|..++|||+.+.
T Consensus 360 -~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 360 -LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred -CCceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 2334568999999987753 3788999999875
No 289
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.67 E-value=0.002 Score=71.46 Aligned_cols=198 Identities=13% Similarity=0.152 Sum_probs=118.4
Q ss_pred ECCCCCEEEEEeCCCcEEEEecCCccceecccc-cc----cccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEec
Q 003087 62 WSESHDVLGIVDDTHTVYFFKANGEEITRFTNK-HL----KVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEIS 136 (849)
Q Consensus 62 fSPDG~~LAs~~~dgtIrlWd~~g~~~~~l~~~-~~----~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~ 136 (849)
-+.||+.++-.- -|.|+++|.....+..+.-. .. +....+.-+-|-.+- +...+ ..+..-..|..-+.+..
T Consensus 274 ~nsDGkrIvFq~-~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledf-a~~~G--d~ia~VSRGkaFi~~~~ 349 (668)
T COG4946 274 ANSDGKRIVFQN-AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDF-AVVNG--DYIALVSRGKAFIMRPW 349 (668)
T ss_pred cCCCCcEEEEec-CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhh-ccCCC--cEEEEEecCcEEEECCC
Confidence 366888887433 36699999876654443222 00 000111111111110 01111 12222344555555543
Q ss_pred CCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccc
Q 003087 137 QDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQI 216 (849)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~ 216 (849)
.+.. ++-+++.+|.-..+.-++.-++.|-.|+. .+-+++..++. ...+
T Consensus 350 ~~~~--------------iqv~~~~~VrY~r~~~~~e~~vigt~dgD------------~l~iyd~~~~e-~kr~----- 397 (668)
T COG4946 350 DGYS--------------IQVGKKGGVRYRRIQVDPEGDVIGTNDGD------------KLGIYDKDGGE-VKRI----- 397 (668)
T ss_pred CCee--------------EEcCCCCceEEEEEccCCcceEEeccCCc------------eEEEEecCCce-EEEe-----
Confidence 3332 22345667999999999998888877763 37788877652 0111
Q ss_pred cceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEE
Q 003087 217 EGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDF 296 (849)
Q Consensus 217 ~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v 296 (849)
.+ .-+.|.+|..||||++++.+.....|-+-|++++... ... +.-.+-|.++
T Consensus 398 -------e~--~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~--~id-----------------kS~~~lItdf 449 (668)
T COG4946 398 -------EK--DLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR--LID-----------------KSEYGLITDF 449 (668)
T ss_pred -------eC--CccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee--Eec-----------------ccccceeEEE
Confidence 11 2347889999999999999988888888899887541 111 1123558999
Q ss_pred EEecCCE-EEEEEeCC----cEEEEEecCCcc
Q 003087 297 AWWSDNI-LILARKSS----IITMIDVLSGLK 323 (849)
Q Consensus 297 aws~D~~-la~a~~dg----ti~lwdl~~~~~ 323 (849)
+|+|+++ +|-|-.+| .|+++|+.+++.
T Consensus 450 ~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 450 DWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred EEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence 9999997 56566666 788999998774
No 290
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.60 E-value=0.021 Score=60.34 Aligned_cols=237 Identities=9% Similarity=0.050 Sum_probs=120.1
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEecCCc---cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEe
Q 003087 59 YGAWSESHDVLGIVDDTHTVYFFKANGE---EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEI 135 (849)
Q Consensus 59 ~vafSPDG~~LAs~~~dgtIrlWd~~g~---~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~ 135 (849)
.++-++||++||..-+ ..|-+=....+ .+....- +.+....-+-|+||||... ++.+...|+|+++|+
T Consensus 2 ~~~~~~~Gk~lAi~qd-~~iEiRsa~Ddf~si~~kcqV-pkD~~PQWRkl~WSpD~tl-------La~a~S~G~i~vfdl 72 (282)
T PF15492_consen 2 HLALSSDGKLLAILQD-QCIEIRSAKDDFSSIIGKCQV-PKDPNPQWRKLAWSPDCTL-------LAYAESTGTIRVFDL 72 (282)
T ss_pred ceeecCCCcEEEEEec-cEEEEEeccCCchheeEEEec-CCCCCchheEEEECCCCcE-------EEEEcCCCeEEEEec
Confidence 3678899999998754 34544333211 1111100 0011122345666665543 455678999999998
Q ss_pred cCCCCcccccccccCCcceeccccCCceEEEEEcCCC------ceEEEEecCCCCccccCCCCCCceeeEEEecCCc--C
Q 003087 136 SQDPSASISSASASSSGLTLRRQFPQNVICTDYHPEL------SLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNL--E 207 (849)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg------~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~--~ 207 (849)
.....- .+. ...++.+.....|.++.|-+-. -.|.+....+ . ++-+-+..++ .
T Consensus 73 ~g~~lf-~I~-----p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G-----------~--L~Sy~vs~gt~q~ 133 (282)
T PF15492_consen 73 MGSELF-VIP-----PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRG-----------Q--LRSYLVSVGTNQG 133 (282)
T ss_pred ccceeE-EcC-----cccccCCccccceeeeEeeccccccccceeEEEEeccc-----------e--eeeEEEEcccCCc
Confidence 743221 111 1112333444567888775543 1223334443 1 4444442211 1
Q ss_pred cccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCC-----------cEEEEecCCCccccccccccccccc
Q 003087 208 LEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNG-----------CLYIFEMDKDNFSLSKFACGERFDL 276 (849)
Q Consensus 208 ~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dg-----------tv~LWd~~~~~~~l~~~~~~~~~~~ 276 (849)
++.-.+.++ ... +..+|.++.+.|.-++|..||... -+.-|.+-++..=.+..+..+....
T Consensus 134 y~e~hsfsf------~~~--yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~ 205 (282)
T PF15492_consen 134 YQENHSFSF------SSH--YPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDIT 205 (282)
T ss_pred ceeeEEEEe------ccc--CCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccc
Confidence 111111111 011 345899999999999988876522 1445666544221111111100000
Q ss_pred -----ccccccCC-----CCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecCCccc----cccCCCC
Q 003087 277 -----QVADSLFD-----GRTKPISDITDFAWWSDNI-LILARKSSIITMIDVLSGLKV----KETDPKL 331 (849)
Q Consensus 277 -----~~~~~l~~-----~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~~~l----~~~~~~~ 331 (849)
...-.+.+ ..+.....|..+.-||||. ||+...+|.|.+|++++.+.. +++.|++
T Consensus 206 ~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eqPg~ 275 (282)
T PF15492_consen 206 ASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQPGY 275 (282)
T ss_pred ccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhCCCC
Confidence 00000011 0122346788999999997 677899999999999998743 2455644
No 291
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.60 E-value=0.01 Score=66.80 Aligned_cols=68 Identities=16% Similarity=0.160 Sum_probs=42.9
Q ss_pred cceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeecC-----------------CCCEEEEEECCCCCEEEEEe
Q 003087 11 KKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTG-----------------LGASIYGAWSESHDVLGIVD 73 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~-----------------~~~v~~vafSPDG~~LAs~~ 73 (849)
..+....|||||+.||.+.++.+-+++..++ .. ..++..| -+.-..+-|||||+.||...
T Consensus 43 ~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~--~~-~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 43 PKLQDAKWSPDGKYIAFVRDNNLYLRDLATG--QE-TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp TTBSEEEE-SSSTEEEEEETTEEEEESSTTS--EE-EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred cccccceeecCCCeeEEEecCceEEEECCCC--Ce-EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 4677899999999999999998888875433 11 1122111 11225688999999999876
Q ss_pred CC-CcEEEE
Q 003087 74 DT-HTVYFF 81 (849)
Q Consensus 74 ~d-gtIrlW 81 (849)
-| ..|+.+
T Consensus 120 ~d~~~v~~~ 128 (353)
T PF00930_consen 120 FDEREVPEY 128 (353)
T ss_dssp EE-TTS-EE
T ss_pred ECCcCCceE
Confidence 54 334444
No 292
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.54 E-value=0.0079 Score=63.46 Aligned_cols=227 Identities=13% Similarity=0.193 Sum_probs=129.2
Q ss_pred eEEEEecCCCCCcceeeeeecCCCCEEEEEEC---CCCC-EEEEEeCCCcEEEEecCCcc-ceecccccc-ccccc-EEE
Q 003087 32 QVTILQKDDDYQEPCGIFNCTGLGASIYGAWS---ESHD-VLGIVDDTHTVYFFKANGEE-ITRFTNKHL-KVSLP-IIG 104 (849)
Q Consensus 32 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafS---PDG~-~LAs~~~dgtIrlWd~~g~~-~~~l~~~~~-~~~~~-V~~ 104 (849)
.+.+.+..+..-.+.-..+..++..+..+-|+ -||. .|+-+..+|.|.++...+.+ ...+.+-.. +.+.. ..+
T Consensus 47 kl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ls 126 (339)
T KOG0280|consen 47 KLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALS 126 (339)
T ss_pred ceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeE
Confidence 35566655433233323333345666777776 3666 67888899999999876432 222222111 11111 234
Q ss_pred EEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCc-eEEEEecCCC
Q 003087 105 LIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELS-LLSVVSNTDT 183 (849)
Q Consensus 105 l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~-lLas~g~d~t 183 (849)
+.|++.+. ++++.-.+|.+..-+.........+ +.+ .|.-..+...|+-... ++.+||.|+
T Consensus 127 lD~~~~~~-------~i~vs~s~G~~~~v~~t~~~le~vq---------~wk-~He~E~Wta~f~~~~pnlvytGgDD~- 188 (339)
T KOG0280|consen 127 LDISTSGT-------KIFVSDSRGSISGVYETEMVLEKVQ---------TWK-VHEFEAWTAKFSDKEPNLVYTGGDDG- 188 (339)
T ss_pred EEeeccCc-------eEEEEcCCCcEEEEecceeeeeecc---------ccc-ccceeeeeeecccCCCceEEecCCCc-
Confidence 44444222 2555567788875554433322211 123 3344588899987554 666776664
Q ss_pred CccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEcc-CCCEEEEEeCCCcEEEEecCCCc
Q 003087 184 SSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISP-QGKFVATSDTNGCLYIFEMDKDN 262 (849)
Q Consensus 184 ~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSP-DG~~LAs~s~Dgtv~LWd~~~~~ 262 (849)
.++.||...+. .-++. ..+ .|+.+|.++.=|| ++.+||||+.|..|++||..+-.
T Consensus 189 ------------~l~~~D~R~p~--~~i~~--------n~k--vH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~ 244 (339)
T KOG0280|consen 189 ------------SLSCWDIRIPK--TFIWH--------NSK--VHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG 244 (339)
T ss_pred ------------eEEEEEecCCc--ceeee--------cce--eeecceEEEecCCCCCceEEEeccccceeeeehhccc
Confidence 38899987321 12221 111 2889999998884 79999999999999999997532
Q ss_pred ccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE---EEEEEeCCcEEEEEecC
Q 003087 263 FSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI---LILARKSSIITMIDVLS 320 (849)
Q Consensus 263 ~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~---la~a~~dgti~lwdl~~ 320 (849)
.+ |.+. .-.++|+.|.|.|-.. +++...+| .+|-++..
T Consensus 245 kP-----------------l~~~--~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~ 285 (339)
T KOG0280|consen 245 KP-----------------LFKA--KVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSD 285 (339)
T ss_pred Cc-----------------cccC--ccccceEEEEecchhhhHHHHHHHhcC-ceEEEecc
Confidence 21 1111 2236799999999543 33334444 34445443
No 293
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.51 E-value=0.0015 Score=74.91 Aligned_cols=145 Identities=16% Similarity=0.118 Sum_probs=85.1
Q ss_pred cceEEEEEcCCCCeEEEEe---CC--eEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEE-EEeCCCc--EEEEe
Q 003087 11 KKQVSLFISPRGERVAVAA---VN--QVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLG-IVDDTHT--VYFFK 82 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas---~~--~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LA-s~~~dgt--IrlWd 82 (849)
..+..-+|||||+.+|..+ .+ .+.+++...+....+..+. +.-..-+|||||+.|| +...||. |.+.|
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~----g~~~~P~fspDG~~l~f~~~rdg~~~iy~~d 268 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN----GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMD 268 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC----CccCCccCCCCCCEEEEEECCCCCccEEEEc
Confidence 5577789999999999884 23 3777776654332222221 1223569999999999 4556666 55557
Q ss_pred cCCccceecccccccccccEE-EEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCC
Q 003087 83 ANGEEITRFTNKHLKVSLPII-GLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQ 161 (849)
Q Consensus 83 ~~g~~~~~l~~~~~~~~~~V~-~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (849)
+.|+.+.+++.... +. .=.|+||+.. .+++.+..|.-.+|-...++.... ..++.+..
T Consensus 269 l~~~~~~~Lt~~~g-----i~~~Ps~spdG~~------ivf~Sdr~G~p~I~~~~~~g~~~~--------riT~~~~~-- 327 (425)
T COG0823 269 LDGKNLPRLTNGFG-----INTSPSWSPDGSK------IVFTSDRGGRPQIYLYDLEGSQVT--------RLTFSGGG-- 327 (425)
T ss_pred CCCCcceecccCCc-----cccCccCCCCCCE------EEEEeCCCCCcceEEECCCCCcee--------EeeccCCC--
Confidence 77877666544321 11 2233554432 234446667666666654333211 01222221
Q ss_pred ceEEEEEcCCCceEEEEecC
Q 003087 162 NVICTDYHPELSLLSVVSNT 181 (849)
Q Consensus 162 ~V~svafsPdg~lLas~g~d 181 (849)
=..-.+||||+.+|..+..
T Consensus 328 -~~~p~~SpdG~~i~~~~~~ 346 (425)
T COG0823 328 -NSNPVWSPDGDKIVFESSS 346 (425)
T ss_pred -CcCccCCCCCCEEEEEecc
Confidence 1267899999999988744
No 294
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.47 E-value=0.0066 Score=71.09 Aligned_cols=266 Identities=12% Similarity=0.073 Sum_probs=146.1
Q ss_pred cccceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCC------------CCEEEEEeCCC
Q 003087 9 KTKKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSES------------HDVLGIVDDTH 76 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPD------------G~~LAs~~~dg 76 (849)
.+..-.++.|||.| ++|.|+++.|.+-|... + +.+... .++.+.|+.|.|+|- .-+||+|+..|
T Consensus 14 ~~sN~~A~Dw~~~G-LiAygshslV~VVDs~s-~-q~iqsi-e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG-LIAYGSHSLVSVVDSRS-L-QLIQSI-ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred CcccccccccCccc-eEEEecCceEEEEehhh-h-hhhhcc-ccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 34446788999966 89999999888877442 1 122222 234688999999873 23789999999
Q ss_pred cEEEEecC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCccee
Q 003087 77 TVYFFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTL 155 (849)
Q Consensus 77 tIrlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l 155 (849)
.|-|||.. +..+.-+. ++ +.+|..+.+-+....+.- -++.+....++-+||..+|+....+.
T Consensus 90 rIil~d~~~~s~~~~l~-~~---~~~~qdl~W~~~rd~Srd---~LlaIh~ss~lvLwntdtG~k~Wk~~---------- 152 (1062)
T KOG1912|consen 90 RIILVDFVLASVINWLS-HS---NDSVQDLCWVPARDDSRD---VLLAIHGSSTLVLWNTDTGEKFWKYD---------- 152 (1062)
T ss_pred cEEEEEehhhhhhhhhc-CC---CcchhheeeeeccCcchh---eeEEecCCcEEEEEEccCCceeeccc----------
Confidence 99999986 44433332 22 356677777442222211 24556788899999998887643221
Q ss_pred ccccCCceEEEEEcC-CCceEEEEecCCCCcccc----CCCCCCceeeEEEecCC-cCcccc----eeccccceeeccCC
Q 003087 156 RRQFPQNVICTDYHP-ELSLLSVVSNTDTSSLTS----SGNSGPCCISLWRRCHN-LELEQL----YTTQIEGLYCEPKG 225 (849)
Q Consensus 156 ~~~~~~~V~svafsP-dg~lLas~g~d~t~~~~~----~~~~G~~~I~lW~~~~~-~~~~~l----~~~~~~~~~~~~~g 225 (849)
.-.....|+.|.| |.+.+.+-|..+.+-+-. ..+++. .+...+.+. .++..+ .++. ..-+.+..
T Consensus 153 --ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~p--gk~~qI~sd~Sdl~~lere~at~n--s~ts~~~s 226 (1062)
T KOG1912|consen 153 --YSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVP--GKEFQITSDHSDLAHLERETATGN--STTSTPAS 226 (1062)
T ss_pred --cCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCC--ceeEEEecCccchhhhhhhhhccc--cccCCCcc
Confidence 0012345577777 455444444443111100 011111 233333221 011100 0000 00000000
Q ss_pred CccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE--
Q 003087 226 HEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-- 303 (849)
Q Consensus 226 ~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-- 303 (849)
..---..-.++|||-=+-+.-.-....+.++|++-..+ +...+.. ++ .+.=+.|-||.+
T Consensus 227 a~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~-l~vvpie--------------r~----~akfv~vlP~~~rd 287 (1062)
T KOG1912|consen 227 AYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECC-LAVVPIE--------------RG----GAKFVDVLPDPRRD 287 (1062)
T ss_pred hhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhce-eEEEEec--------------cC----CcceeEeccCCCcc
Confidence 00000123678999888877778899999999986543 4343311 11 122245567763
Q ss_pred -EEEEEeCCcEEEEEecC
Q 003087 304 -LILARKSSIITMIDVLS 320 (849)
Q Consensus 304 -la~a~~dgti~lwdl~~ 320 (849)
+-..-.||.+++|--+.
T Consensus 288 ~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 288 ALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred eEEEEecCCeEEEEEeec
Confidence 66778899999987654
No 295
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.43 E-value=0.0039 Score=66.95 Aligned_cols=214 Identities=15% Similarity=0.152 Sum_probs=129.3
Q ss_pred cceEEEEEcCCCCeEEEEeC-CeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCc-cc
Q 003087 11 KKQVSLFISPRGERVAVAAV-NQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGE-EI 88 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~-~~ 88 (849)
+.|++...=|.-..|.++++ .+++||-..|..+.--.++. .....++++.++++...|.+|-.+|+|.=+.+.-. ..
T Consensus 25 d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnk 103 (404)
T KOG1409|consen 25 DDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-YMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNK 103 (404)
T ss_pred hhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhh-hCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhh
Confidence 55677777788888888885 58999965543111001111 11457899999999999999999999988866411 11
Q ss_pred eecccccccccccEEEEEecC--CcccccccceeE------------------------------EEEeCCCcEEEEEec
Q 003087 89 TRFTNKHLKVSLPIIGLIAQD--ETDVQRSCLCSF------------------------------TVFTSDGFLHQIEIS 136 (849)
Q Consensus 89 ~~l~~~~~~~~~~V~~l~fs~--~~~~~~s~~~~~------------------------------~~~s~Dg~v~lw~~~ 136 (849)
.+..+.-..+...|..+.|+- ....+.+-+..| ++....|.|..-.+.
T Consensus 104 m~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~ 183 (404)
T KOG1409|consen 104 MTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLE 183 (404)
T ss_pred cchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEe
Confidence 111111112235677777752 111111111111 111111222222222
Q ss_pred CCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccc
Q 003087 137 QDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQI 216 (849)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~ 216 (849)
..... ...++.+ |...|.+.+|.|.-++|.++.+|. .|..||+-+..
T Consensus 184 ~~~~~---------~i~~~~~-h~~~~~~l~Wd~~~~~LfSg~~d~-------------~vi~wdigg~~---------- 230 (404)
T KOG1409|consen 184 QNGCQ---------LITTFNG-HTGEVTCLKWDPGQRLLFSGASDH-------------SVIMWDIGGRK---------- 230 (404)
T ss_pred ecCCc---------eEEEEcC-cccceEEEEEcCCCcEEEeccccC-------------ceEEEeccCCc----------
Confidence 11111 1124453 456799999999999999988875 27889987642
Q ss_pred cceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003087 217 EGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKD 261 (849)
Q Consensus 217 ~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~ 261 (849)
|....+.| |.+-|..+..-+--+.|.|++.||.|-+|+++..
T Consensus 231 -g~~~el~g--h~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 231 -GTAYELQG--HNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred -ceeeeecc--chhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 11112234 7778888888888999999999999999999865
No 296
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.00037 Score=77.90 Aligned_cols=210 Identities=14% Similarity=0.137 Sum_probs=120.7
Q ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEEecC--Cccc------eecccccccccccEEEEEecCCcccccccceeEEEEe
Q 003087 54 LGASIYGAWSESHDVLGIVDDTHTVYFFKAN--GEEI------TRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFT 125 (849)
Q Consensus 54 ~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~--g~~~------~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s 125 (849)
+..|+.++=--+-.-.+|++.|.||++|.+. |..+ ++...| ..+|.++.|-.+.. .+++
T Consensus 735 ~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aH----kk~i~~igfL~~lr---------~i~S 801 (1034)
T KOG4190|consen 735 QEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAH----KKPIHDIGFLADLR---------SIAS 801 (1034)
T ss_pred HHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhc----cCcccceeeeeccc---------eeee
Confidence 4456655544466678899999999999874 4332 233322 25688888754322 2347
Q ss_pred CCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCC-CceEEEEecCCCCccccCCCCCCceeeEEEecC
Q 003087 126 SDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPE-LSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCH 204 (849)
Q Consensus 126 ~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPd-g~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~ 204 (849)
-||.|++||.--|....-.+ ..++ + ..+.-|..-|+ .+.++++|+... .+|++.|...
T Consensus 802 cD~giHlWDPFigr~Laq~~----dapk----~--~a~~~ikcl~nv~~~iliAgcsae-----------STVKl~DaRs 860 (1034)
T KOG4190|consen 802 CDGGIHLWDPFIGRLLAQME----DAPK----E--GAGGNIKCLENVDRHILIAGCSAE-----------STVKLFDARS 860 (1034)
T ss_pred ccCcceeecccccchhHhhh----cCcc----c--CCCceeEecccCcchheeeeccch-----------hhheeeeccc
Confidence 89999999976555432111 0111 1 12333344444 444555554321 1356655443
Q ss_pred CcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCC
Q 003087 205 NLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFD 284 (849)
Q Consensus 205 ~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~ 284 (849)
..-.-.+. .....| ....+++++..|.|+.||.+=.+|+|-+-|..++.. +..|...+-
T Consensus 861 ce~~~E~k-------Vcna~~--Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~v-INswrpmec----------- 919 (1034)
T KOG4190|consen 861 CEWTCELK-------VCNAPG--PNALTRAIAVADKGNKLAAALSNGCIAILDARNGKV-INSWRPMEC----------- 919 (1034)
T ss_pred ccceeeEE-------eccCCC--CchheeEEEeccCcchhhHHhcCCcEEEEecCCCce-eccCCcccc-----------
Confidence 21000000 000011 223678999999999999999999999999998854 556653221
Q ss_pred CCCCCCCCcEEEEEecCCEEEEEEeCCcEEE-EEecCCcccc
Q 003087 285 GRTKPISDITDFAWWSDNILILARKSSIITM-IDVLSGLKVK 325 (849)
Q Consensus 285 ~~~~~~~~v~~vaws~D~~la~a~~dgti~l-wdl~~~~~l~ 325 (849)
....++=.+|+.++....|.++.| |--..|.-.+
T Consensus 920 -------dllqlaapsdq~L~~saldHslaVnWhaldgimh~ 954 (1034)
T KOG4190|consen 920 -------DLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHL 954 (1034)
T ss_pred -------hhhhhcCchhHHHHhhcccceeEeeehhcCCeeee
Confidence 112233335667777777888888 8777665433
No 297
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.40 E-value=0.019 Score=60.81 Aligned_cols=207 Identities=15% Similarity=0.104 Sum_probs=113.5
Q ss_pred EEEECC-CCCEEEEEeCCCcEEEEecCCccceecccccccccccEEEEEec-CCcccccccceeEEEEeCCCcEEEEEec
Q 003087 59 YGAWSE-SHDVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQ-DETDVQRSCLCSFTVFTSDGFLHQIEIS 136 (849)
Q Consensus 59 ~vafSP-DG~~LAs~~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs-~~~~~~~s~~~~~~~~s~Dg~v~lw~~~ 136 (849)
+++|-| +|.++.+--..+.|+-|+..+.....+... ...++++. +++ .++++...+ +.++|..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~------~~~G~~~~~~~g--------~l~v~~~~~-~~~~d~~ 68 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLP------GPNGMAFDRPDG--------RLYVADSGG-IAVVDPD 68 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESS------SEEEEEEECTTS--------EEEEEETTC-EEEEETT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecC------CCceEEEEccCC--------EEEEEEcCc-eEEEecC
Confidence 578998 888888887899999999987664333211 14567775 442 355555544 4555877
Q ss_pred CCCCcccccccccCCcceeccc-cCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceecc
Q 003087 137 QDPSASISSASASSSGLTLRRQ-FPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQ 215 (849)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~-~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~ 215 (849)
++....... ...+. .....+.+++.|+|++.++....... ... ..| ++|++........+..
T Consensus 69 ~g~~~~~~~--------~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~--~~~-~~g----~v~~~~~~~~~~~~~~-- 131 (246)
T PF08450_consen 69 TGKVTVLAD--------LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGA--SGI-DPG----SVYRIDPDGKVTVVAD-- 131 (246)
T ss_dssp TTEEEEEEE--------EETTCSCTEEEEEEEE-TTS-EEEEEECCBCT--TCG-GSE----EEEEEETTSEEEEEEE--
T ss_pred CCcEEEEee--------ccCCCcccCCCceEEEcCCCCEEEEecCCCcc--ccc-ccc----ceEEECCCCeEEEEec--
Confidence 665433322 01111 22368999999999977665443210 000 002 4666665411111111
Q ss_pred ccceeeccCCCccccccceEEEccCCCEEE-EEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcE
Q 003087 216 IEGLYCEPKGHEVQLAHPKVLISPQGKFVA-TSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDIT 294 (849)
Q Consensus 216 ~~~~~~~~~g~~h~~~V~~vafSPDG~~LA-s~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~ 294 (849)
.....+.|+|||||+.|. +-+..+.|.-+++......+..... .-.+. .....+-
T Consensus 132 ------------~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~--------~~~~~----~~~g~pD 187 (246)
T PF08450_consen 132 ------------GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRV--------FIDFP----GGPGYPD 187 (246)
T ss_dssp ------------EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEE--------EEE-S----SSSCEEE
T ss_pred ------------CcccccceEECCcchheeecccccceeEEEeccccccceeeeee--------EEEcC----CCCcCCC
Confidence 112345799999999776 5567788888888643211111000 00011 1112245
Q ss_pred EEEEecCCEEEEEE-eCCcEEEEEecCCc
Q 003087 295 DFAWWSDNILILAR-KSSIITMIDVLSGL 322 (849)
Q Consensus 295 ~vaws~D~~la~a~-~dgti~lwdl~~~~ 322 (849)
.++.-++|.|-++. ..|.|.+++-. |+
T Consensus 188 G~~vD~~G~l~va~~~~~~I~~~~p~-G~ 215 (246)
T PF08450_consen 188 GLAVDSDGNLWVADWGGGRIVVFDPD-GK 215 (246)
T ss_dssp EEEEBTTS-EEEEEETTTEEEEEETT-SC
T ss_pred cceEcCCCCEEEEEcCCCEEEEECCC-cc
Confidence 67887888776664 57788888866 54
No 298
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0012 Score=72.93 Aligned_cols=221 Identities=14% Similarity=0.132 Sum_probs=128.3
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeC-CCcEEEEecCCc
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDD-THTVYFFKANGE 86 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~-dgtIrlWd~~g~ 86 (849)
+|+.|+.++-+ -.+++.+|| |+.++.|-.....+...-++...+...+.+++-|-||.+.+|++. |..+|++|+..-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 56666666554 578888998 789999975432222222221112456689999999999999877 999999998532
Q ss_pred cceecccccccccccEEEEEecCCcccccccceeEEE-EeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTV-FTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVIC 165 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~-~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~s 165 (849)
-...... .......+ ....+++ +..+ .+++ .-.+|.+.++|-..+.++..+ +.+-|.++|..
T Consensus 87 DminmiK-L~~lPg~a-~wv~skG-d~~s----~IAVs~~~sg~i~VvD~~~d~~q~~~----------fkklH~sPV~~ 149 (558)
T KOG0882|consen 87 DMINMIK-LVDLPGFA-EWVTSKG-DKIS----LIAVSLFKSGKIFVVDGFGDFCQDGY----------FKKLHFSPVKK 149 (558)
T ss_pred chhhhcc-cccCCCce-EEecCCC-Ceee----eEEeecccCCCcEEECCcCCcCccce----------ecccccCceEE
Confidence 1110000 00000111 1122221 0000 1222 135788888886554443221 23445678999
Q ss_pred EEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCc-cc--ceecccc-ceeeccCCCccccccceEEEccCC
Q 003087 166 TDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLEL-EQ--LYTTQIE-GLYCEPKGHEVQLAHPKVLISPQG 241 (849)
Q Consensus 166 vafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~-~~--l~~~~~~-~~~~~~~g~~h~~~V~~vafSPDG 241 (849)
+.|.|-|...+|..-. | .|.-|...+.... +. .+....+ -++-.++ ......++-|||+|
T Consensus 150 i~y~qa~Ds~vSiD~~-----------g--mVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K---~Kt~pts~Efsp~g 213 (558)
T KOG0882|consen 150 IRYNQAGDSAVSIDIS-----------G--MVEYWSAEGPFQFPRTNLNFELKHETDLYGFPK---AKTEPTSFEFSPDG 213 (558)
T ss_pred EEeeccccceeecccc-----------c--eeEeecCCCcccCccccccccccccchhhcccc---cccCccceEEcccc
Confidence 9999999887654333 3 3788877642100 00 0111111 1111111 12345689999999
Q ss_pred CEEEEEeCCCcEEEEecCCCcc
Q 003087 242 KFVATSDTNGCLYIFEMDKDNF 263 (849)
Q Consensus 242 ~~LAs~s~Dgtv~LWd~~~~~~ 263 (849)
..+++.+.|.+|+++...++..
T Consensus 214 ~qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 214 AQISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred CcccccCcccEEEEEEeccchh
Confidence 9999999999999999998854
No 299
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.37 E-value=0.0034 Score=67.34 Aligned_cols=231 Identities=10% Similarity=0.038 Sum_probs=137.1
Q ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEEec-C-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEE
Q 003087 54 LGASIYGAWSESHDVLGIVDDTHTVYFFKA-N-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLH 131 (849)
Q Consensus 54 ~~~v~~vafSPDG~~LAs~~~dgtIrlWd~-~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~ 131 (849)
.+.+.....=|-..-+.+++.|.|||||-- + |+.=..+ .| ....++.++.+.++. .++++.-.+|++.
T Consensus 24 ~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI--~~-~mP~~~~~~~y~~e~-------~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 24 QDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSI--YH-YMPSPCSAMEYVSES-------RRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhheeccCCCCeEEccccceeeeEEeccccccCchh--hh-hCCCCceEeeeeccc-------eEEEEEEecceEE
Confidence 455666677777788899999999999954 3 3321111 11 112456666665422 1466667788887
Q ss_pred EEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCC----CceeeEEEecCCcC
Q 003087 132 QIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSG----PCCISLWRRCHNLE 207 (849)
Q Consensus 132 lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G----~~~I~lW~~~~~~~ 207 (849)
-+.++.+-.....- .... .|...|..+-|+--..++++.|.|+.. .|.-.++| .+...-|.....-+
T Consensus 94 efs~sedfnkm~~~-------r~~~-~h~~~v~~~if~~~~e~V~s~~~dk~~-~~hc~e~~~~lg~Y~~~~~~t~~~~d 164 (404)
T KOG1409|consen 94 EFALSEDFNKMTFL-------KDYL-AHQARVSAIVFSLTHEWVLSTGKDKQF-AWHCTESGNRLGGYNFETPASALQFD 164 (404)
T ss_pred EEEhhhhhhhcchh-------hhhh-hhhcceeeEEecCCceeEEEeccccce-EEEeeccCCcccceEeeccCCCCcee
Confidence 77665432211100 0111 234579999999999999999888621 22212222 11111121111000
Q ss_pred cc---------cce----eccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCccccccccccccc
Q 003087 208 LE---------QLY----TTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERF 274 (849)
Q Consensus 208 ~~---------~l~----~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~ 274 (849)
+. ++. ..+..+++...+| |.+.+.+++|-|-.++|.|+..|..|..||+.+.+. ... +..
T Consensus 165 ~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~--h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g--~~~---el~ 237 (404)
T KOG1409|consen 165 ALYAFVGDHSGQITMLKLEQNGCQLITTFNG--HTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG--TAY---ELQ 237 (404)
T ss_pred eEEEEecccccceEEEEEeecCCceEEEEcC--cccceEEEEEcCCCcEEEeccccCceEEEeccCCcc--eee---eec
Confidence 00 010 1111255666778 999999999999999999999999999999987632 111 110
Q ss_pred ccccccccCCCCCCCCCCcEEEEEecC-CEEEEEEeCCcEEEEEecCCcc
Q 003087 275 DLQVADSLFDGRTKPISDITDFAWWSD-NILILARKSSIITMIDVLSGLK 323 (849)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~v~~vaws~D-~~la~a~~dgti~lwdl~~~~~ 323 (849)
.|...|..+..-+- .++.+++.||.|.+|+++..+.
T Consensus 238 -------------gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 238 -------------GHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred -------------cchhhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence 23333444433232 2578899999999999987763
No 300
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.35 E-value=0.081 Score=56.03 Aligned_cols=206 Identities=10% Similarity=0.043 Sum_probs=103.9
Q ss_pred EEEEEcC-CCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEEC-CCCCEEEEEeCCCcEEEEecCCcccee
Q 003087 14 VSLFISP-RGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWS-ESHDVLGIVDDTHTVYFFKANGEEITR 90 (849)
Q Consensus 14 ~slafSP-dG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafS-PDG~~LAs~~~dgtIrlWd~~g~~~~~ 90 (849)
..++|.| +|.++.+-. .+.|..|+..++ ....+. .+....+++. +||+++++.. . .+.++|..+..+..
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~---~~~~~~---~~~~~G~~~~~~~g~l~v~~~-~-~~~~~d~~~g~~~~ 74 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTG---EVEVID---LPGPNGMAFDRPDGRLYVADS-G-GIAVVDPDTGKVTV 74 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTT---EEEEEE---SSSEEEEEEECTTSEEEEEET-T-CEEEEETTTTEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCC---eEEEEe---cCCCceEEEEccCCEEEEEEc-C-ceEEEecCCCcEEE
Confidence 4678888 777777764 578888886542 111222 2236678888 7877666654 3 45566876544333
Q ss_pred ccccc-cc-ccccEEEEEecCCcccccccceeEEEEeCC--CcEEEEEecCCCCcccccccccCCcceeccccCCceEEE
Q 003087 91 FTNKH-LK-VSLPIIGLIAQDETDVQRSCLCSFTVFTSD--GFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT 166 (849)
Q Consensus 91 l~~~~-~~-~~~~V~~l~fs~~~~~~~s~~~~~~~~s~D--g~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv 166 (849)
+.... .. .....+.+++.+++.. +-.+......... |.|..++.. ++...... .. ...+.+
T Consensus 75 ~~~~~~~~~~~~~~ND~~vd~~G~l-y~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~------------~~-~~pNGi 139 (246)
T PF08450_consen 75 LADLPDGGVPFNRPNDVAVDPDGNL-YVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD------------GL-GFPNGI 139 (246)
T ss_dssp EEEEETTCSCTEEEEEEEE-TTS-E-EEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE------------EE-SSEEEE
T ss_pred EeeccCCCcccCCCceEEEcCCCCE-EEEecCCCccccccccceEEECCC-CeEEEEec------------Cc-ccccce
Confidence 32221 11 1134667888775532 1100000000000 333333332 12111111 11 236899
Q ss_pred EEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEE
Q 003087 167 DYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVAT 246 (849)
Q Consensus 167 afsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs 246 (849)
+|+|||+.|.++.... + .|..++++... ..+... ..+....+ .....-.+++.++|++.++
T Consensus 140 ~~s~dg~~lyv~ds~~----------~--~i~~~~~~~~~--~~~~~~---~~~~~~~~--~~g~pDG~~vD~~G~l~va 200 (246)
T PF08450_consen 140 AFSPDGKTLYVADSFN----------G--RIWRFDLDADG--GELSNR---RVFIDFPG--GPGYPDGLAVDSDGNLWVA 200 (246)
T ss_dssp EEETTSSEEEEEETTT----------T--EEEEEEEETTT--CCEEEE---EEEEE-SS--SSCEEEEEEEBTTS-EEEE
T ss_pred EECCcchheeeccccc----------c--eeEEEeccccc--cceeee---eeEEEcCC--CCcCCCcceEcCCCCEEEE
Confidence 9999999887764443 1 23334443221 111100 11111111 1112457999999999998
Q ss_pred EeCCCcEEEEecCCC
Q 003087 247 SDTNGCLYIFEMDKD 261 (849)
Q Consensus 247 ~s~Dgtv~LWd~~~~ 261 (849)
.-..+.|..++..+.
T Consensus 201 ~~~~~~I~~~~p~G~ 215 (246)
T PF08450_consen 201 DWGGGRIVVFDPDGK 215 (246)
T ss_dssp EETTTEEEEEETTSC
T ss_pred EcCCCEEEEECCCcc
Confidence 888999999998854
No 301
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.18 E-value=0.0057 Score=70.28 Aligned_cols=74 Identities=12% Similarity=0.157 Sum_probs=58.3
Q ss_pred cccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEE-EE
Q 003087 228 VQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNIL-IL 306 (849)
Q Consensus 228 h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~l-a~ 306 (849)
....|.++++||+...|+.|-.||+|.|||...+. .++.. ..-.+..++|.|||.+ ++
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~---t~~~k------------------a~~~P~~iaWHp~gai~~V 316 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV---TLLAK------------------AEFIPTLIAWHPDGAIFVV 316 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCe---eeeee------------------ecccceEEEEcCCCcEEEE
Confidence 34588999999999999999999999999998652 23221 1123577999999974 57
Q ss_pred EEeCCcEEEEEecCCc
Q 003087 307 ARKSSIITMIDVLSGL 322 (849)
Q Consensus 307 a~~dgti~lwdl~~~~ 322 (849)
++..|.+++||+.-.-
T Consensus 317 ~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 317 GSEQGELQCFDMALSP 332 (545)
T ss_pred EcCCceEEEEEeecCc
Confidence 8888999999997553
No 302
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.0013 Score=73.78 Aligned_cols=196 Identities=7% Similarity=0.026 Sum_probs=112.5
Q ss_pred CCCCeEEEEe-CCeEEEEecCCC---CCcceeeee-ecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cccceeccc
Q 003087 20 PRGERVAVAA-VNQVTILQKDDD---YQEPCGIFN-CTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEITRFTN 93 (849)
Q Consensus 20 PdG~~LAsas-~~~i~iw~~~~~---~~~~~~~~~-~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~~~l~~ 93 (849)
-|-+-+.++| |.+|++|..... .++....++ ..+...|.++.|-.|-+.+||+ ||.|++||.- |..+.....
T Consensus 745 dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~d 822 (1034)
T KOG4190|consen 745 DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMED 822 (1034)
T ss_pred ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhc
Confidence 4556666776 789999986532 121122334 2346789999999999999776 5789999985 776554432
Q ss_pred ccccccccEEEEEecC--C-cccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceec--cccCCceEEEEE
Q 003087 94 KHLKVSLPIIGLIAQD--E-TDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLR--RQFPQNVICTDY 168 (849)
Q Consensus 94 ~~~~~~~~V~~l~fs~--~-~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~V~svaf 168 (849)
.... +++..+.--+ + ... ++.++...||+++|....+....+. .- .+...-+.+++.
T Consensus 823 apk~--~a~~~ikcl~nv~~~il-------iAgcsaeSTVKl~DaRsce~~~E~k---------Vcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 823 APKE--GAGGNIKCLENVDRHIL-------IAGCSAESTVKLFDARSCEWTCELK---------VCNAPGPNALTRAIAV 884 (1034)
T ss_pred Cccc--CCCceeEecccCcchhe-------eeeccchhhheeeecccccceeeEE---------eccCCCCchheeEEEe
Confidence 2111 1222222222 1 122 2334788899999877554322111 11 021234899999
Q ss_pred cCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEe
Q 003087 169 HPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSD 248 (849)
Q Consensus 169 sPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s 248 (849)
-|.|+.+|++=+.+++.+-. ..+|. +|.-|+...- ....++ .|..|.||...
T Consensus 885 a~~GN~lAa~LSnGci~~LD-aR~G~-vINswrpmec-------------------------dllqla-apsdq~L~~sa 936 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILD-ARNGK-VINSWRPMEC-------------------------DLLQLA-APSDQALAQSA 936 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEe-cCCCc-eeccCCcccc-------------------------hhhhhc-CchhHHHHhhc
Confidence 99999998876665210000 11121 2233332221 011122 47788899999
Q ss_pred CCCcEEE-EecCCCcc
Q 003087 249 TNGCLYI-FEMDKDNF 263 (849)
Q Consensus 249 ~Dgtv~L-Wd~~~~~~ 263 (849)
.|.++.+ |..-.+.+
T Consensus 937 ldHslaVnWhaldgim 952 (1034)
T KOG4190|consen 937 LDHSLAVNWHALDGIM 952 (1034)
T ss_pred ccceeEeeehhcCCee
Confidence 9999999 97766543
No 303
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.14 E-value=0.0087 Score=63.18 Aligned_cols=199 Identities=12% Similarity=0.093 Sum_probs=110.0
Q ss_pred EEEEEcCCCCeEEEE-eCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCC-CCEEEEEeCCCcEEEEecC--Cccce
Q 003087 14 VSLFISPRGERVAVA-AVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSES-HDVLGIVDDTHTVYFFKAN--GEEIT 89 (849)
Q Consensus 14 ~slafSPdG~~LAsa-s~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPD-G~~LAs~~~dgtIrlWd~~--g~~~~ 89 (849)
.++.||+-|+-++++ +.+.+.+-+-...--.....+.. +.-..+...||-. -.++-+|++||.+.-||.. ++.+.
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~-He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKV-HEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccc-cceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 578899999998877 45666533311100000011222 2234456788753 4677799999999999986 33333
Q ss_pred ecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecC-CCCcccccccccCCcceeccccCCceEEEEE
Q 003087 90 RFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQ-DPSASISSASASSSGLTLRRQFPQNVICTDY 168 (849)
Q Consensus 90 ~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~V~svaf 168 (849)
+-...| ..-|.++.-+|.. ...+++++||-+|++||... ++. .+ .+....+|+-+..
T Consensus 204 ~n~kvH---~~GV~SI~ss~~~------~~~I~TGsYDe~i~~~DtRnm~kP--l~-----------~~~v~GGVWRi~~ 261 (339)
T KOG0280|consen 204 HNSKVH---TSGVVSIYSSPPK------PTYIATGSYDECIRVLDTRNMGKP--LF-----------KAKVGGGVWRIKH 261 (339)
T ss_pred ecceee---ecceEEEecCCCC------CceEEEeccccceeeeehhcccCc--cc-----------cCccccceEEEEe
Confidence 311112 2346677655521 12478889999999999874 222 11 1122347999999
Q ss_pred cCC--CceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEE
Q 003087 169 HPE--LSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVAT 246 (849)
Q Consensus 169 sPd--g~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs 246 (849)
||. +++||+.-..+ .++-++.....-.++ .+..++. |..-++.--|..-..+|||
T Consensus 262 ~p~~~~~lL~~CMh~G--------------~ki~~~~~~~~e~~~-------~~~s~~~--hdSl~YG~DWd~~~~~lAT 318 (339)
T KOG0280|consen 262 HPEIFHRLLAACMHNG--------------AKILDSSDKVLEFQI-------VLPSDKI--HDSLCYGGDWDSKDSFLAT 318 (339)
T ss_pred cchhhhHHHHHHHhcC--------------ceEEEecccccchhe-------eeecccc--ccceeeccccccccceeee
Confidence 996 44565544443 466666554211111 0112233 5444444445222346888
Q ss_pred EeC-CCcEE-EEec
Q 003087 247 SDT-NGCLY-IFEM 258 (849)
Q Consensus 247 ~s~-Dgtv~-LWd~ 258 (849)
.++ |+.++ +|-.
T Consensus 319 CsFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 319 CSFYDKKIRQLWLH 332 (339)
T ss_pred eeccccceeeeeee
Confidence 764 66644 7743
No 304
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.10 E-value=0.0026 Score=73.89 Aligned_cols=248 Identities=15% Similarity=0.152 Sum_probs=131.5
Q ss_pred eEEEEEcCCCC---eEEEEeCCeEEEEecCCCCCcceeeeeecC-CCCEEEEEECCCC-CEEEEEeCCCcEEEEecCCcc
Q 003087 13 QVSLFISPRGE---RVAVAAVNQVTILQKDDDYQEPCGIFNCTG-LGASIYGAWSESH-DVLGIVDDTHTVYFFKANGEE 87 (849)
Q Consensus 13 v~slafSPdG~---~LAsas~~~i~iw~~~~~~~~~~~~~~~~~-~~~v~~vafSPDG-~~LAs~~~dgtIrlWd~~g~~ 87 (849)
|..+.|||... .+++.+.....||+........+ .+..+| ...|+.+.|.|.. ..||+++-|-.|+.||.....
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aI-ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~ 148 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAI-EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH 148 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccce-EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence 44566666553 44444555667888653222222 233334 5678999999965 688999999999999986432
Q ss_pred --ceecccccccccccEEEEEecC-CcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceE
Q 003087 88 --ITRFTNKHLKVSLPIIGLIAQD-ETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVI 164 (849)
Q Consensus 88 --~~~l~~~~~~~~~~V~~l~fs~-~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~ 164 (849)
+.....-+ .....|.++- +...+++ +.-.-|++||...|..... ++++ +...|+
T Consensus 149 ~p~ys~~~w~----s~asqVkwnyk~p~vlas--------shg~~i~vwd~r~gs~pl~----------s~K~-~vs~vn 205 (1081)
T KOG0309|consen 149 RPFYSTSSWR----SAASQVKWNYKDPNVLAS--------SHGNDIFVWDLRKGSTPLC----------SLKG-HVSSVN 205 (1081)
T ss_pred cceeeeeccc----ccCceeeecccCcchhhh--------ccCCceEEEeccCCCcceE----------Eecc-cceeee
Confidence 11111111 1122344432 2222222 4455689999987765321 3444 344688
Q ss_pred EEEEcCC-CceEEEEecCCCCccccCCCCCCceeeEEEecCCcCc-ccceeccc---cceeeccCCCccccccceEEEcc
Q 003087 165 CTDYHPE-LSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLEL-EQLYTTQI---EGLYCEPKGHEVQLAHPKVLISP 239 (849)
Q Consensus 165 svafsPd-g~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~-~~l~~~~~---~~~~~~~~g~~h~~~V~~vafSP 239 (849)
+++|..- ...+.+.+.|+| |+.|+...++.. +...+..+ .+.+. +-| .-+.+-++-
T Consensus 206 ~~~fnr~~~s~~~s~~~d~t-------------vkfw~y~kSt~e~~~~vtt~~piw~~r~~-Pfg-----~g~~~mp~~ 266 (1081)
T KOG0309|consen 206 SIDFNRFKYSEIMSSSNDGT-------------VKFWDYSKSTTESKRTVTTNFPIWRGRYL-PFG-----EGYCIMPMV 266 (1081)
T ss_pred hHHHhhhhhhhhcccCCCCc-------------eeeecccccccccceeccccCcceecccc-ccC-----ceeEecccc
Confidence 8888652 223446667765 677776554211 11111000 01000 001 112233333
Q ss_pred CCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCC-----------EEEEEE
Q 003087 240 QGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDN-----------ILILAR 308 (849)
Q Consensus 240 DG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~-----------~la~a~ 308 (849)
-|+.+--..-+.....|++.++...+..|. +|...|.++-|-..+ +|++=+
T Consensus 267 G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~------------------GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWS 328 (1081)
T KOG0309|consen 267 GGNMVPQLRCENSDLEWNVFDLNTPVHTFV------------------GHDDVVLEFLWRKRKECDGDYDSRDFQLVTWS 328 (1081)
T ss_pred CCeeeeeccccchhhhhccccCCcceeeec------------------CcchHHHHHhhhhcccccCCCCccceeEEEee
Confidence 344333344455556676665533344444 344445555554311 477789
Q ss_pred eCCcEEEEEecCC
Q 003087 309 KSSIITMIDVLSG 321 (849)
Q Consensus 309 ~dgti~lwdl~~~ 321 (849)
+|.+++||-+.+.
T Consensus 329 kD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 329 KDQTLRLWPIDSQ 341 (1081)
T ss_pred cCCceEeeeccHH
Confidence 9999999999754
No 305
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.00 E-value=0.035 Score=64.95 Aligned_cols=82 Identities=13% Similarity=-0.002 Sum_probs=58.3
Q ss_pred cccCcccccceEEEEEcCCCCeEEEEeC-CeEEEEecCCCCCcceeeee-e---cCCCCEEEEEECCCCCEEEEEeCCCc
Q 003087 3 LYRQPRKTKKQVSLFISPRGERVAVAAV-NQVTILQKDDDYQEPCGIFN-C---TGLGASIYGAWSESHDVLGIVDDTHT 77 (849)
Q Consensus 3 ~~~~~~~~~~v~slafSPdG~~LAsas~-~~i~iw~~~~~~~~~~~~~~-~---~~~~~v~~vafSPDG~~LAs~~~dgt 77 (849)
.|.+-.+.+.+.+..+|++-.++|.|++ +.|-+..... .+.+...+. . .+...|++++||+||+.+-+|++.|+
T Consensus 69 ~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~-~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gk 147 (726)
T KOG3621|consen 69 KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK-ELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGK 147 (726)
T ss_pred cccccCccceEEEEEecchhHhhhhhcCCceEEeehhhc-cCCCcceeeccccccCCceEEEEEecccccEEeecCCCce
Confidence 3444445677889999999999999986 4555554332 222222222 1 12457899999999999999999999
Q ss_pred EEEEecCC
Q 003087 78 VYFFKANG 85 (849)
Q Consensus 78 IrlWd~~g 85 (849)
|.+-.++.
T Consensus 148 v~~~~L~s 155 (726)
T KOG3621|consen 148 VVLTELDS 155 (726)
T ss_pred EEEEEech
Confidence 99988876
No 306
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.99 E-value=0.084 Score=56.20 Aligned_cols=157 Identities=13% Similarity=0.108 Sum_probs=83.5
Q ss_pred cceEEEEEcCCCCeEEEEeC--CeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC--Cc
Q 003087 11 KKQVSLFISPRGERVAVAAV--NQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN--GE 86 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~--~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~--g~ 86 (849)
+.+..|+|.||.+.|++..| ..|...+.. +..+.+....+.+....|++.-+|+++++...++++.+.++. ++
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~---G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~ 98 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD---GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTT 98 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----T
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCC---CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccc
Confidence 45899999999888887775 355555643 345555555456678999999999988888889999999883 32
Q ss_pred ccee-----cccc-cccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecC--CCC-ccccc-ccccCCcceec
Q 003087 87 EITR-----FTNK-HLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQ--DPS-ASISS-ASASSSGLTLR 156 (849)
Q Consensus 87 ~~~~-----l~~~-~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~--~~~-~~~~~-~~~~~~~~~l~ 156 (849)
.+.. +.-. ....+.-+-+|++.+.+ ++|+++....-.+++.+.. +.. ..... ..+ .-.
T Consensus 99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~-------~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~-----~~~ 166 (248)
T PF06977_consen 99 SLDRADVQKISLGFPNKGNKGFEGLAYDPKT-------NRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDL-----DDD 166 (248)
T ss_dssp T--EEEEEEEE---S---SS--EEEEEETTT-------TEEEEEEESSSEEEEEEESTT-SS--EEEE-HHH-----H-H
T ss_pred ccchhhceEEecccccCCCcceEEEEEcCCC-------CEEEEEeCCCChhhEEEccccCccceeecccccc-----ccc
Confidence 2111 1000 00112336677776532 2355666666677777754 111 11100 000 000
Q ss_pred cccCCceEEEEEcCCCceEEEEecCC
Q 003087 157 RQFPQNVICTDYHPELSLLSVVSNTD 182 (849)
Q Consensus 157 ~~~~~~V~svafsPdg~lLas~g~d~ 182 (849)
......+.+++|+|....|.+-|..+
T Consensus 167 ~~~~~d~S~l~~~p~t~~lliLS~es 192 (248)
T PF06977_consen 167 KLFVRDLSGLSYDPRTGHLLILSDES 192 (248)
T ss_dssp T--SS---EEEEETTTTEEEEEETTT
T ss_pred cceeccccceEEcCCCCeEEEEECCC
Confidence 11223589999999866555555543
No 307
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.98 E-value=0.014 Score=67.84 Aligned_cols=160 Identities=13% Similarity=0.146 Sum_probs=94.7
Q ss_pred CcccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC
Q 003087 6 QPRKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN 84 (849)
Q Consensus 6 ~~~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~ 84 (849)
+-|+...|.|++|..||+.++.+. ||.|.+=.+++. ..-|+ ..++ .....+.||||.+.+..+-.+|.++++|..
T Consensus 111 NnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGN--RIwgK-eLkg-~~l~hv~ws~D~~~~Lf~~ange~hlydnq 186 (1189)
T KOG2041|consen 111 NNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGN--RIWGK-ELKG-QLLAHVLWSEDLEQALFKKANGETHLYDNQ 186 (1189)
T ss_pred hCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccc--eecch-hcch-heccceeecccHHHHHhhhcCCcEEEeccc
Confidence 455667799999999999998875 565554443321 00010 0111 123468999999999999999999999998
Q ss_pred Cccceecc--------cccccccccEEEEEecCCcccccccc-eeEEEEeCCCcEEEEEecCCCCcccccccccCCccee
Q 003087 85 GEEITRFT--------NKHLKVSLPIIGLIAQDETDVQRSCL-CSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTL 155 (849)
Q Consensus 85 g~~~~~l~--------~~~~~~~~~V~~l~fs~~~~~~~s~~-~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l 155 (849)
|.--..+. +....+...|.++-+..+.......+ -.|+++=.+|.+++.--..++.+..+.
T Consensus 187 gnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d---------- 256 (1189)
T KOG2041|consen 187 GNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD---------- 256 (1189)
T ss_pred ccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe----------
Confidence 86322221 11101111233333321111111112 147777778888777654444332221
Q ss_pred ccccCCceEEEEEcCCCceEEEEecCC
Q 003087 156 RRQFPQNVICTDYHPELSLLSVVSNTD 182 (849)
Q Consensus 156 ~~~~~~~V~svafsPdg~lLas~g~d~ 182 (849)
.+ -.|..+.|+|+|..||++|.+.
T Consensus 257 -tg--m~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 257 -TG--MKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred -cc--cEeecceecCCCcEEEEccCcc
Confidence 11 1378899999999999999875
No 308
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.87 E-value=0.0021 Score=74.59 Aligned_cols=199 Identities=14% Similarity=0.186 Sum_probs=125.8
Q ss_pred cceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeecC--CCCEEEEEECCCC---CEEEEEeCCCcEEEEecC-
Q 003087 11 KKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTG--LGASIYGAWSESH---DVLGIVDDTHTVYFFKAN- 84 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~--~~~v~~vafSPDG---~~LAs~~~dgtIrlWd~~- 84 (849)
+.+.+++++|-|+-+|.|+....-|.++++.+..|. + .++ ...|-.+.|||.. ..+++.+...+| +|++.
T Consensus 25 ~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr--~-l~h~tpw~vad~qws~h~a~~~wiVsts~qkai-iwnlA~ 100 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPR--W-LHHITPWQVADVQWSPHPAKPYWIVSTSNQKAI-IWNLAK 100 (1081)
T ss_pred CcccceeeccccchhhhhhhcCeEEEeccCCCCCce--e-eeccCcchhcceecccCCCCceeEEecCcchhh-hhhhhc
Confidence 778899999999999999875566778776554432 1 122 2345688999864 456666666665 89874
Q ss_pred --CccceecccccccccccEEEEEecCC-cccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCC
Q 003087 85 --GEEITRFTNKHLKVSLPIIGLIAQDE-TDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQ 161 (849)
Q Consensus 85 --g~~~~~l~~~~~~~~~~V~~l~fs~~-~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (849)
.+.+--... +++.+|.++-|.+. ..+ +++++.|-.++.||....... ++. +..- .+
T Consensus 101 ss~~aIef~lh---ghsraitd~n~~~q~pdV-------latcsvdt~vh~wd~rSp~~p-~ys---------~~~w-~s 159 (1081)
T KOG0309|consen 101 SSSNAIEFVLH---GHSRAITDINFNPQHPDV-------LATCSVDTYVHAWDMRSPHRP-FYS---------TSSW-RS 159 (1081)
T ss_pred CCccceEEEEe---cCccceeccccCCCCCcc-------eeeccccccceeeeccCCCcc-eee---------eecc-cc
Confidence 222222221 23467889999762 233 445688999999998754432 211 1111 23
Q ss_pred ceEEEEEcC-CCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEcc-
Q 003087 162 NVICTDYHP-ELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISP- 239 (849)
Q Consensus 162 ~V~svafsP-dg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSP- 239 (849)
+-..|+|+- |+..||+.-.. .|.+|+...+. .++. ..+| |...|+++.|.-
T Consensus 160 ~asqVkwnyk~p~vlasshg~--------------~i~vwd~r~gs--~pl~---------s~K~--~vs~vn~~~fnr~ 212 (1081)
T KOG0309|consen 160 AASQVKWNYKDPNVLASSHGN--------------DIFVWDLRKGS--TPLC---------SLKG--HVSSVNSIDFNRF 212 (1081)
T ss_pred cCceeeecccCcchhhhccCC--------------ceEEEeccCCC--cceE---------Eecc--cceeeehHHHhhh
Confidence 467888876 56666543222 28999986542 1221 2345 667777777732
Q ss_pred CCCEEEEEeCCCcEEEEecCCC
Q 003087 240 QGKFVATSDTNGCLYIFEMDKD 261 (849)
Q Consensus 240 DG~~LAs~s~Dgtv~LWd~~~~ 261 (849)
--..+-+.+.||+|+.|+-.+.
T Consensus 213 ~~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 213 KYSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred hhhhhcccCCCCceeeeccccc
Confidence 2334677889999999999864
No 309
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.87 E-value=0.16 Score=62.81 Aligned_cols=218 Identities=12% Similarity=0.175 Sum_probs=124.9
Q ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEE
Q 003087 54 LGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQI 133 (849)
Q Consensus 54 ~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw 133 (849)
.+.|.++.|--|+.-|..+..+|.|.+-|.....+ .+-+ .+...|.++.++||... +++++.++++-+.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg---~vd~GI~aaswS~Dee~-------l~liT~~~tll~m 136 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVG---NVDNGISAASWSPDEEL-------LALITGRQTLLFM 136 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccce-eeee---eccCceEEEeecCCCcE-------EEEEeCCcEEEEE
Confidence 46899999999999999999999999987764332 2211 22345777777776543 4556777776544
Q ss_pred EecCCCC----c--------ccccccccCCcceeccc--------------------cCCceEEEEEcCCCceEEEEecC
Q 003087 134 EISQDPS----A--------SISSASASSSGLTLRRQ--------------------FPQNVICTDYHPELSLLSVVSNT 181 (849)
Q Consensus 134 ~~~~~~~----~--------~~~~~~~~~~~~~l~~~--------------------~~~~V~svafsPdg~lLas~g~d 181 (849)
.-.=.+. . ...+.-+......|+|. ..+.=.+|.|--||+++|+.+-.
T Consensus 137 T~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~ 216 (1265)
T KOG1920|consen 137 TKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVE 216 (1265)
T ss_pred eccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEe
Confidence 3210000 0 00000000000112210 01123568999999999886544
Q ss_pred CCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEe---CCCcEEEEec
Q 003087 182 DTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSD---TNGCLYIFEM 258 (849)
Q Consensus 182 ~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s---~Dgtv~LWd~ 258 (849)
. .+|...|++|+..+..+. . + .+ ....-.+++|-|.|..+|+.. .|++|.++.-
T Consensus 217 ~--------~~~~RkirV~drEg~Lns--~-s--------e~----~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr 273 (1265)
T KOG1920|consen 217 S--------ETGTRKIRVYDREGALNS--T-S--------EP----VEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER 273 (1265)
T ss_pred c--------cCCceeEEEecccchhhc--c-c--------Cc----ccccccceeecCCCCeEeeeeecCCCCcEEEEec
Confidence 2 234446999998853211 0 0 00 011223899999999999974 4667889988
Q ss_pred CCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEE-EE---EEeCCcEEEEEecCC
Q 003087 259 DKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNIL-IL---ARKSSIITMIDVLSG 321 (849)
Q Consensus 259 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~l-a~---a~~dgti~lwdl~~~ 321 (849)
.+.+. ..|. +..++. ...|..++|..++.+ |+ ......|++|.+.+-
T Consensus 274 NGL~h--g~f~--------l~~p~d------e~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 274 NGLRH--GEFV--------LPFPLD------EKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CCccc--cccc--------cCCccc------ccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 87633 1222 111111 123789999998864 44 223334888877544
No 310
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=96.87 E-value=0.0022 Score=71.54 Aligned_cols=168 Identities=14% Similarity=0.177 Sum_probs=108.0
Q ss_pred ccCcccccceEEEEEcCCCC-eEEEEe-CCeEEEEecCCCCCc----ceeeeeecC-----CCCEEEEEECCCCCEEEEE
Q 003087 4 YRQPRKTKKQVSLFISPRGE-RVAVAA-VNQVTILQKDDDYQE----PCGIFNCTG-----LGASIYGAWSESHDVLGIV 72 (849)
Q Consensus 4 ~~~~~~~~~v~slafSPdG~-~LAsas-~~~i~iw~~~~~~~~----~~~~~~~~~-----~~~v~~vafSPDG~~LAs~ 72 (849)
+..++.|-..++++..|-.. ++|+++ +.-+++.+...-... ++.++.+++ ...|++++||.||.=|.++
T Consensus 275 ~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaS 354 (559)
T KOG1334|consen 275 EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLAS 354 (559)
T ss_pred ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeee
Confidence 34455555789999999887 778886 566788775421000 122232221 4568999999777666666
Q ss_pred eCCCcEEEEecC---Ccc----------ceecccccccccccEEEEEec-CCcccccccceeEEEEeCCCcEEEEEecCC
Q 003087 73 DDTHTVYFFKAN---GEE----------ITRFTNKHLKVSLPIIGLIAQ-DETDVQRSCLCSFTVFTSDGFLHQIEISQD 138 (849)
Q Consensus 73 ~~dgtIrlWd~~---g~~----------~~~l~~~~~~~~~~V~~l~fs-~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~ 138 (849)
-.|--|+|++.+ |.. .....++|.. +.+|-+|-|- |... .+.+++.-|.|-+|+-.++
T Consensus 355 YnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN-~~TVKgVNFfGPrsE-------yVvSGSDCGhIFiW~K~t~ 426 (559)
T KOG1334|consen 355 YNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRN-SRTVKGVNFFGPRSE-------YVVSGSDCGHIFIWDKKTG 426 (559)
T ss_pred ecccceEEeccccccCCCCCCCcchhhccchhhccccc-ccccceeeeccCccc-------eEEecCccceEEEEecchh
Confidence 667779999653 421 1121222322 3457778773 3221 2444567799999998877
Q ss_pred CCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecC
Q 003087 139 PSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCH 204 (849)
Q Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~ 204 (849)
....+.+ |. ..-|+|+.=||---+||+.|-|.. |+||-..+
T Consensus 427 eii~~Me-----------gD-r~VVNCLEpHP~~PvLAsSGid~D-------------VKIWTP~~ 467 (559)
T KOG1334|consen 427 EIIRFME-----------GD-RHVVNCLEPHPHLPVLASSGIDHD-------------VKIWTPLT 467 (559)
T ss_pred HHHHHhh-----------cc-cceEeccCCCCCCchhhccCCccc-------------eeeecCCc
Confidence 7665544 22 226999999999999999998863 78886644
No 311
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.82 E-value=0.009 Score=67.69 Aligned_cols=146 Identities=12% Similarity=0.064 Sum_probs=87.1
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEecCC-ccceecccccccccccEEEEEecC--CcccccccceeEEEE-e-CCCcEEE
Q 003087 58 IYGAWSESHDVLGIVDDTHTVYFFKANG-EEITRFTNKHLKVSLPIIGLIAQD--ETDVQRSCLCSFTVF-T-SDGFLHQ 132 (849)
Q Consensus 58 ~~vafSPDG~~LAs~~~dgtIrlWd~~g-~~~~~l~~~~~~~~~~V~~l~fs~--~~~~~~s~~~~~~~~-s-~Dg~v~l 132 (849)
+-|.|||-|++|+|--.-| |.+|--.. ..+.++. | ..|.-+.||| ...+.+++.-..... . .-..+++
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~--H----p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY--H----PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc--C----CCceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence 5799999999999988766 77995321 1223331 2 1366788888 344444432111110 1 1246899
Q ss_pred EEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccce
Q 003087 133 IEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLY 212 (849)
Q Consensus 133 w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~ 212 (849)
||+.+|.....+. .+.+.... =.-+.||-|++++|-...++ |.+++..+- ..+
T Consensus 287 WDI~tG~lkrsF~--------~~~~~~~~-WP~frWS~DdKy~Arm~~~s--------------isIyEtpsf---~ll- 339 (698)
T KOG2314|consen 287 WDIATGLLKRSFP--------VIKSPYLK-WPIFRWSHDDKYFARMTGNS--------------ISIYETPSF---MLL- 339 (698)
T ss_pred EEccccchhccee--------ccCCCccc-cceEEeccCCceeEEeccce--------------EEEEecCce---eee-
Confidence 9999988754432 11122211 23478999999999876663 777765431 111
Q ss_pred eccccceeeccCCCccccccceEEEccCCCEEEEE
Q 003087 213 TTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATS 247 (849)
Q Consensus 213 ~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~ 247 (849)
... .. .-.+|...+|||-+++||-=
T Consensus 340 d~K------sl----ki~gIr~FswsP~~~llAYw 364 (698)
T KOG2314|consen 340 DKK------SL----KISGIRDFSWSPTSNLLAYW 364 (698)
T ss_pred ccc------cc----CCccccCcccCCCcceEEEE
Confidence 111 00 23578899999999999854
No 312
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.54 E-value=0.008 Score=71.16 Aligned_cols=193 Identities=13% Similarity=0.118 Sum_probs=116.2
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeC--CCcEEEEecC--C
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDD--THTVYFFKAN--G 85 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~--dgtIrlWd~~--g 85 (849)
..-+.++||-+-+.||+|+ .|.|+++++..+. -.+...+ |...|+.|-=|-||.++.+.+. ..-.-||+.. |
T Consensus 1102 ~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~--~e~s~nc-H~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~ 1178 (1516)
T KOG1832|consen 1102 ALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS--MEESVNC-HQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG 1178 (1516)
T ss_pred cceeeEEeecCCceEEeeeccceEEEEEccCcc--ccccccc-cccccccccccCCcceeeeeccccCchHHHhcccccc
Confidence 4567899999999999998 5899999987542 2222223 3577888988999988775443 3356799985 3
Q ss_pred ccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCccc-ccccccCCcceeccccCCceE
Q 003087 86 EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASI-SSASASSSGLTLRRQFPQNVI 164 (849)
Q Consensus 86 ~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~V~ 164 (849)
.....+.. -.++-|+...... ++++.-....+||+.++..... +.. .....+++ +
T Consensus 1179 ~~~Hsf~e--------d~~vkFsn~~q~r-------~~gt~~d~a~~YDvqT~~~l~tylt~-------~~~~~y~~--n 1234 (1516)
T KOG1832|consen 1179 GPRHSFDE--------DKAVKFSNSLQFR-------ALGTEADDALLYDVQTCSPLQTYLTD-------TVTSSYSN--N 1234 (1516)
T ss_pred Cccccccc--------cceeehhhhHHHH-------HhcccccceEEEecccCcHHHHhcCc-------chhhhhhc--c
Confidence 32222221 2346676521111 1112334578999998665333 221 11223444 8
Q ss_pred EEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEE
Q 003087 165 CTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFV 244 (849)
Q Consensus 165 svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~L 244 (849)
++.|||+..++. +|| -+||+........+ . ++ .... .=-|.|.|.-+
T Consensus 1235 ~a~FsP~D~LIl---ndG---------------vLWDvR~~~aIh~F-D-~f----t~~~---------~G~FHP~g~eV 1281 (1516)
T KOG1832|consen 1235 LAHFSPCDTLIL---NDG---------------VLWDVRIPEAIHRF-D-QF----TDYG---------GGGFHPSGNEV 1281 (1516)
T ss_pred ccccCCCcceEe---eCc---------------eeeeeccHHHHhhh-h-hh----eecc---------cccccCCCceE
Confidence 899999999874 675 38998764211111 0 00 0000 12478999998
Q ss_pred EEEeCCCcEEEEecCCCcccccccc
Q 003087 245 ATSDTNGCLYIFEMDKDNFSLSKFA 269 (849)
Q Consensus 245 As~s~Dgtv~LWd~~~~~~~l~~~~ 269 (849)
+.-+ -|||+.+-++ |+..+
T Consensus 1282 IINS-----EIwD~RTF~l-Lh~VP 1300 (1516)
T KOG1832|consen 1282 IINS-----EIWDMRTFKL-LHSVP 1300 (1516)
T ss_pred Eeec-----hhhhhHHHHH-HhcCc
Confidence 8765 4899987654 44433
No 313
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.53 E-value=0.012 Score=68.15 Aligned_cols=128 Identities=14% Similarity=0.243 Sum_probs=90.3
Q ss_pred eEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCC-cCcc--cceeccccceeeccCCCccccccceEEEcc
Q 003087 163 VICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHN-LELE--QLYTTQIEGLYCEPKGHEVQLAHPKVLISP 239 (849)
Q Consensus 163 V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~-~~~~--~l~~~~~~~~~~~~~g~~h~~~V~~vafSP 239 (849)
..|++|.-+..++|.||.|+- +++-.+.+. +++. .+....-..+-+...| |...|.-+.|.-
T Consensus 17 L~c~~WNke~gyIAcgG~dGl-------------LKVlKl~t~t~d~~~~glaa~snLsmNQtLeG--H~~sV~vvTWNe 81 (1189)
T KOG2041|consen 17 LHCAEWNKESGYIACGGADGL-------------LKVLKLGTDTTDLNKSGLAAASNLSMNQTLEG--HNASVMVVTWNE 81 (1189)
T ss_pred EEEEEEcccCCeEEeccccce-------------eEEEEccccCCcccccccccccccchhhhhcc--CcceEEEEEecc
Confidence 789999999999999999972 555555432 1111 1221111122234567 888999999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEe
Q 003087 240 QGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDV 318 (849)
Q Consensus 240 DG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl 318 (849)
+.|.|-|.+++|-|-+|-+.++ +|-. +..|+|++ .-|.+++|..||. |.++..||.|-|=++
T Consensus 82 ~~QKLTtSDt~GlIiVWmlykg-----sW~E----------EMiNnRnK--SvV~SmsWn~dG~kIcIvYeDGavIVGsv 144 (1189)
T KOG2041|consen 82 NNQKLTTSDTSGLIIVWMLYKG-----SWCE----------EMINNRNK--SVVVSMSWNLDGTKICIVYEDGAVIVGSV 144 (1189)
T ss_pred ccccccccCCCceEEEEeeecc-----cHHH----------HHhhCcCc--cEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence 9999999999999999999876 3432 12333343 4588999999984 778889998877666
Q ss_pred cCCc
Q 003087 319 LSGL 322 (849)
Q Consensus 319 ~~~~ 322 (849)
.+++
T Consensus 145 dGNR 148 (1189)
T KOG2041|consen 145 DGNR 148 (1189)
T ss_pred ccce
Confidence 6544
No 314
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=96.53 E-value=0.0074 Score=64.88 Aligned_cols=151 Identities=9% Similarity=0.040 Sum_probs=88.5
Q ss_pred EEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEE
Q 003087 122 TVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWR 201 (849)
Q Consensus 122 ~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~ 201 (849)
++++.+..|-+.|+.+|..+.+ . .+..|.+..|+--+.++..|-..+ . |-..|
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf------------~--sksDVfAlQf~~s~nLv~~GcRng-----------e--I~~iD 280 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSF------------Q--SKSDVFALQFAGSDNLVFNGCRNG-----------E--IFVID 280 (425)
T ss_pred ecccccceeEEEEeeccccccc------------c--cchhHHHHHhcccCCeeEecccCC-----------c--EEEEE
Confidence 3446677777888877665433 1 234699999999888876554443 2 33344
Q ss_pred ecCCcCcccceeccccceeeccCCCccccccceEEEcc-CCCEEEEEeCCCcEEEEecCCCcc--ccccccccccccccc
Q 003087 202 RCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISP-QGKFVATSDTNGCLYIFEMDKDNF--SLSKFACGERFDLQV 278 (849)
Q Consensus 202 ~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSP-DG~~LAs~s~Dgtv~LWd~~~~~~--~l~~~~~~~~~~~~~ 278 (849)
+.....+ ..+..+ .++ |...|.+|..=. ++++|.+.+.+|+|+|||..-.++ .+.++..|. +
T Consensus 281 LR~rnqG-~~~~a~--rly-------h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHv-----N 345 (425)
T KOG2695|consen 281 LRCRNQG-NGWCAQ--RLY-------HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHV-----N 345 (425)
T ss_pred eeecccC-CCcceE--EEE-------cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccc-----c
Confidence 3322100 011111 111 667787776655 899999999999999999975433 122222221 1
Q ss_pred ccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecCCccc
Q 003087 279 ADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSGLKV 324 (849)
Q Consensus 279 ~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~~~~l 324 (849)
.+..-..-|. -..|.|++++.|=..+||++..|+.+
T Consensus 346 ---------~~a~l~~~v~-~eeg~I~s~GdDcytRiWsl~~ghLl 381 (425)
T KOG2695|consen 346 ---------LSAYLPAHVK-EEEGSIFSVGDDCYTRIWSLDSGHLL 381 (425)
T ss_pred ---------cccccccccc-cccceEEEccCeeEEEEEecccCcee
Confidence 0111111111 12456778889999999999998844
No 315
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.50 E-value=1 Score=51.41 Aligned_cols=40 Identities=15% Similarity=0.371 Sum_probs=34.3
Q ss_pred cccceEEEccCCCEEEEEeCCCcEEEEecCCCccccccccc
Q 003087 230 LAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFAC 270 (849)
Q Consensus 230 ~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~ 270 (849)
..+.++..||+|++.|+.+.=|.|.|+|+.++.. ++.|+.
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v-vrmWKG 347 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIV-VRMWKG 347 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh-hhhhcc
Confidence 3577999999999999999999999999998864 667764
No 316
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.48 E-value=0.23 Score=51.71 Aligned_cols=199 Identities=16% Similarity=0.106 Sum_probs=99.8
Q ss_pred CCCCCEEEEEeCCCcEEEEec-CCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCc
Q 003087 63 SESHDVLGIVDDTHTVYFFKA-NGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSA 141 (849)
Q Consensus 63 SPDG~~LAs~~~dgtIrlWd~-~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~ 141 (849)
.++++.+.+++.++.|+.||. +|+.+.+..... .+... . . ...+.+++.+.+|.+..+|..+|...
T Consensus 33 ~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-~~~~~-~--~---------~~~~~v~v~~~~~~l~~~d~~tG~~~ 99 (238)
T PF13360_consen 33 VPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPG-PISGA-P--V---------VDGGRVYVGTSDGSLYALDAKTGKVL 99 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSEEEEEEECSS-CGGSG-E--E---------EETTEEEEEETTSEEEEEETTTSCEE
T ss_pred EEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccc-cccce-e--e---------ecccccccccceeeeEecccCCccee
Confidence 336677777789999999998 688766554321 11111 0 0 01124666678888888888777764
Q ss_pred ccc-cccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccC-CCCCCceeeEEEecCCcCcccceeccccce
Q 003087 142 SIS-SASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSS-GNSGPCCISLWRRCHNLELEQLYTTQIEGL 219 (849)
Q Consensus 142 ~~~-~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~-~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~ 219 (849)
... .. ...........++..+|..++++..++ .+..+ ..+|. .+|.......... ..
T Consensus 100 W~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~g--~l~~~d~~tG~---~~w~~~~~~~~~~-------~~ 158 (238)
T PF13360_consen 100 WSIYLT---------SSPPAGVRSSSSPAVDGDRLYVGTSSG--KLVALDPKTGK---LLWKYPVGEPRGS-------SP 158 (238)
T ss_dssp EEEEE----------SSCTCSTB--SEEEEETTEEEEEETCS--EEEEEETTTTE---EEEEEESSTT-SS---------
T ss_pred eeeccc---------cccccccccccCceEecCEEEEEeccC--cEEEEecCCCc---EEEEeecCCCCCC-------cc
Confidence 321 10 000000112222333366666666554 23322 23342 3455433210000 00
Q ss_pred eeccCCCccccccceEEEccCCCEEEEEeCCCc-EEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEE
Q 003087 220 YCEPKGHEVQLAHPKVLISPQGKFVATSDTNGC-LYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAW 298 (849)
Q Consensus 220 ~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgt-v~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaw 298 (849)
+.. ..+....+.++ +| .+..++.+|. +.+ |+.+++. .|... ...+....-
T Consensus 159 ~~~-----~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~tg~~---~w~~~------------------~~~~~~~~~ 209 (238)
T PF13360_consen 159 ISS-----FSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLATGEK---LWSKP------------------ISGIYSLPS 209 (238)
T ss_dssp EEE-----ETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTTTEE---EEEEC------------------SS-ECECEE
T ss_pred eee-----ecccccceEEE-CC-EEEEEcCCCeEEEE-ECCCCCE---EEEec------------------CCCccCCce
Confidence 000 00111233333 55 6666677774 666 9998853 23210 011222122
Q ss_pred ecCCEEEEEEeCCcEEEEEecCCccc
Q 003087 299 WSDNILILARKSSIITMIDVLSGLKV 324 (849)
Q Consensus 299 s~D~~la~a~~dgti~lwdl~~~~~l 324 (849)
-.++.+.+++.+|.|..||+.+|+.+
T Consensus 210 ~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 210 VDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp CCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred eeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 34667877888999999999999853
No 317
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.46 E-value=0.038 Score=63.77 Aligned_cols=132 Identities=14% Similarity=0.163 Sum_probs=72.2
Q ss_pred ceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEe-cCCcccee
Q 003087 12 KQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFK-ANGEEITR 90 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd-~~g~~~~~ 90 (849)
.+.+|+++|+|+.+++.+++.-.|..... ...+.. +.-...+|++.|+ .|+-..+++|.+.. ..++....
T Consensus 34 ~p~~ls~npngr~v~V~g~geY~iyt~~~----~r~k~~----G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCGDGEYEIYTALA----WRNKAF----GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp --SEEEE-TTSSEEEEEETTEEEEEETTT----TEEEEE----EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred CCeeEEECCCCCEEEEEcCCEEEEEEccC----Cccccc----CceeEEEEecCcc-EEEEECCCeEEEEEcCccccceE
Confidence 36789999999999999999877776321 111111 1224689999655 77777789999974 33332222
Q ss_pred cccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcC
Q 003087 91 FTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHP 170 (849)
Q Consensus 91 l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsP 170 (849)
+... ..+..|.. + .+.....++.|.+||..++.....+. .+ +|..|.||+
T Consensus 105 i~~~-----~~~~~If~---G--------~LL~~~~~~~i~~yDw~~~~~i~~i~-------------v~-~vk~V~Ws~ 154 (443)
T PF04053_consen 105 IKLP-----FSVEKIFG---G--------NLLGVKSSDFICFYDWETGKLIRRID-------------VS-AVKYVIWSD 154 (443)
T ss_dssp ---S-----S-EEEEE----S--------SSEEEEETTEEEEE-TTT--EEEEES-------------S--E-EEEEE-T
T ss_pred EcCC-----cccceEEc---C--------cEEEEECCCCEEEEEhhHcceeeEEe-------------cC-CCcEEEEEC
Confidence 2211 12333332 1 24444667789999998776543221 12 489999999
Q ss_pred CCceEEEEecCC
Q 003087 171 ELSLLSVVSNTD 182 (849)
Q Consensus 171 dg~lLas~g~d~ 182 (849)
+|.++|..+.+.
T Consensus 155 ~g~~val~t~~~ 166 (443)
T PF04053_consen 155 DGELVALVTKDS 166 (443)
T ss_dssp TSSEEEEE-S-S
T ss_pred CCCEEEEEeCCe
Confidence 999999887664
No 318
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.43 E-value=0.15 Score=61.07 Aligned_cols=146 Identities=16% Similarity=0.138 Sum_probs=77.8
Q ss_pred cceEEEEEcCCCCeEEEEe-------CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCC-CcEEEE-
Q 003087 11 KKQVSLFISPRGERVAVAA-------VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDT-HTVYFF- 81 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-------~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~d-gtIrlW- 81 (849)
..+.+.++||||+.+|... +..-.||-...+ +.. ..++. + .....-.|||||+.|++.++. ..+++.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g-~~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-G-HSLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-C-CCCCCceECCCCCceEEEecCcceEEEec
Confidence 4678999999999998774 334466643211 111 12221 2 236778999999999988643 223333
Q ss_pred ----------ecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecC--CCCccccccccc
Q 003087 82 ----------KANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQ--DPSASISSASAS 149 (849)
Q Consensus 82 ----------d~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~--~~~~~~~~~~~~ 149 (849)
++.+.+... .+...|.++.+|||+.-.+ .+. +|.|.+--+.. ++....
T Consensus 426 ~~~~gql~~~~vd~ge~~~------~~~g~Issl~wSpDG~RiA-------~i~-~g~v~Va~Vvr~~~G~~~l------ 485 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS------RVPGPISELQLSRDGVRAA-------MII-GGKVYLAVVEQTEDGQYAL------ 485 (591)
T ss_pred cCCCceEEEEeccCchhhh------ccCCCcCeEEECCCCCEEE-------EEE-CCEEEEEEEEeCCCCceee------
Confidence 333322211 1124588999999775322 212 45555433322 111111
Q ss_pred CCcceeccccCCceEEEEEcCCCceEEEEecC
Q 003087 150 SSGLTLRRQFPQNVICTDYHPELSLLSVVSNT 181 (849)
Q Consensus 150 ~~~~~l~~~~~~~V~svafsPdg~lLas~g~d 181 (849)
.....+.......+.+++|.++++++ ++..+
T Consensus 486 ~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~ 516 (591)
T PRK13616 486 TNPREVGPGLGDTAVSLDWRTGDSLV-VGRSD 516 (591)
T ss_pred cccEEeecccCCccccceEecCCEEE-EEecC
Confidence 11112222223336889999999965 54443
No 319
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.42 E-value=0.086 Score=62.27 Aligned_cols=196 Identities=7% Similarity=-0.035 Sum_probs=109.9
Q ss_pred EEEEEcCCCCeEEEEe--CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccceec
Q 003087 14 VSLFISPRGERVAVAA--VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRF 91 (849)
Q Consensus 14 ~slafSPdG~~LAsas--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~l 91 (849)
.++=++|||+.+-..+ .+.+...|.+.. .......- .+.-..++++|||+++.+.+.+.. .|..+..+
T Consensus 196 ~~~PlpnDGk~l~~~~ey~~~vSvID~etm--eV~~qV~V--dgnpd~v~~spdGk~afvTsyNsE------~G~tl~em 265 (635)
T PRK02888 196 FRIPLPNDGKDLDDPKKYRSLFTAVDAETM--EVAWQVMV--DGNLDNVDTDYDGKYAFSTCYNSE------EGVTLAEM 265 (635)
T ss_pred cccccCCCCCEeecccceeEEEEEEECccc--eEEEEEEe--CCCcccceECCCCCEEEEeccCcc------cCcceeee
Confidence 3466899999886554 356666675421 12111111 223467899999999998864321 12222222
Q ss_pred ccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecC----CC-CcccccccccCCcceeccccCCceEEE
Q 003087 92 TNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQ----DP-SASISSASASSSGLTLRRQFPQNVICT 166 (849)
Q Consensus 92 ~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~----~~-~~~~~~~~~~~~~~~l~~~~~~~V~sv 166 (849)
..... =..++|+..+......+..+... .++.|.+.|..+ +. ...+ +. -+.....+
T Consensus 266 ~a~e~-----d~~vvfni~~iea~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~y-----------IP--VGKsPHGV 326 (635)
T PRK02888 266 MAAER-----DWVVVFNIARIEEAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRY-----------VP--VPKNPHGV 326 (635)
T ss_pred ccccC-----ceEEEEchHHHHHhhhCCCEEEE-CCCEEEEEECCccccCCcceEEE-----------EE--CCCCccce
Confidence 22111 13456655332222222223222 467799999876 21 1111 11 12346788
Q ss_pred EEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcC-------cccceeccccceeeccCCCccccccceEEEcc
Q 003087 167 DYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLE-------LEQLYTTQIEGLYCEPKGHEVQLAHPKVLISP 239 (849)
Q Consensus 167 afsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~-------~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSP 239 (849)
++||||+.+++++.-. .+|++-|+..... .+.....+ .. -| .+-...+|.+
T Consensus 327 ~vSPDGkylyVanklS------------~tVSVIDv~k~k~~~~~~~~~~~~vvae----ve--vG----lGPLHTaFDg 384 (635)
T PRK02888 327 NTSPDGKYFIANGKLS------------PTVTVIDVRKLDDLFDGKIKPRDAVVAE----PE--LG----LGPLHTAFDG 384 (635)
T ss_pred EECCCCCEEEEeCCCC------------CcEEEEEChhhhhhhhccCCccceEEEe----ec--cC----CCcceEEECC
Confidence 9999999998876533 1478887765321 11111101 00 01 1223589999
Q ss_pred CCCEEEEEeCCCcEEEEecCC
Q 003087 240 QGKFVATSDTNGCLYIFEMDK 260 (849)
Q Consensus 240 DG~~LAs~s~Dgtv~LWd~~~ 260 (849)
+|+...|.-.|..|--|++..
T Consensus 385 ~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 385 RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCEEEeEeecceeEEEehHH
Confidence 999999999999999999986
No 320
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.40 E-value=0.0046 Score=73.07 Aligned_cols=191 Identities=11% Similarity=0.136 Sum_probs=111.0
Q ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEEecC-CccceecccccccccccEEEEEecCCcccccccceeEEEEe-CCCcEE
Q 003087 54 LGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFT-SDGFLH 131 (849)
Q Consensus 54 ~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s-~Dg~v~ 131 (849)
...++++|||-+-+.|++|+..|.|+++++. |......+.|+ ++|.-|-.+-++... +.+.+ ......
T Consensus 1101 ~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~----SavT~vePs~dgs~~------Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1101 TALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQ----SAVTLVEPSVDGSTQ------LTSSSSSSPLSA 1170 (1516)
T ss_pred ccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccc----cccccccccCCccee------eeeccccCchHH
Confidence 5678999999999999999999999999997 65555555443 556655544444321 11112 223456
Q ss_pred EEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccc
Q 003087 132 QIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQL 211 (849)
Q Consensus 132 lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l 211 (849)
+|+.+..... .|+ | ..-.+|.||-..+.=|.|...+ ...++|+.++..++.+
T Consensus 1171 LW~~~s~~~~--------~Hs--f-----~ed~~vkFsn~~q~r~~gt~~d-------------~a~~YDvqT~~~l~ty 1222 (1516)
T KOG1832|consen 1171 LWDASSTGGP--------RHS--F-----DEDKAVKFSNSLQFRALGTEAD-------------DALLYDVQTCSPLQTY 1222 (1516)
T ss_pred HhccccccCc--------ccc--c-----cccceeehhhhHHHHHhccccc-------------ceEEEecccCcHHHHh
Confidence 7877531110 011 1 1357788887644333332222 2578999876444443
Q ss_pred eeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCC
Q 003087 212 YTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPIS 291 (849)
Q Consensus 212 ~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (849)
++.... .+-.-..+.|||+.+++. .|| -|||+...+. ++.|- .|+-. ..
T Consensus 1223 lt~~~~----------~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~a-Ih~FD-----------~ft~~----~~ 1271 (1516)
T KOG1832|consen 1223 LTDTVT----------SSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEA-IHRFD-----------QFTDY----GG 1271 (1516)
T ss_pred cCcchh----------hhhhccccccCCCcceEe---eCc--eeeeeccHHH-Hhhhh-----------hheec----cc
Confidence 321110 111225788999999987 577 4799986632 34432 12211 01
Q ss_pred CcEEEEEecCC-EEEEEEeCCcEEEEEecCCc
Q 003087 292 DITDFAWWSDN-ILILARKSSIITMIDVLSGL 322 (849)
Q Consensus 292 ~v~~vaws~D~-~la~a~~dgti~lwdl~~~~ 322 (849)
+ .|.|.| .+++-+. |||+.|-+
T Consensus 1272 G----~FHP~g~eVIINSE-----IwD~RTF~ 1294 (1516)
T KOG1832|consen 1272 G----GFHPSGNEVIINSE-----IWDMRTFK 1294 (1516)
T ss_pred c----cccCCCceEEeech-----hhhhHHHH
Confidence 1 356765 4555543 99998866
No 321
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.36 E-value=0.4 Score=52.86 Aligned_cols=113 Identities=19% Similarity=0.190 Sum_probs=66.8
Q ss_pred cceEEEEEcCCCCeEEEEe-----------CCeEEEEecCCCCCcceeeee-ec--C---CCCEEEEEECCCCCEEEEEe
Q 003087 11 KKQVSLFISPRGERVAVAA-----------VNQVTILQKDDDYQEPCGIFN-CT--G---LGASIYGAWSESHDVLGIVD 73 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-----------~~~i~iw~~~~~~~~~~~~~~-~~--~---~~~v~~vafSPDG~~LAs~~ 73 (849)
+..-.+++||||+.+.+++ .+-|++||..+ -.+.+... +. . .......++|+||+++.+..
T Consensus 36 g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~T--L~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N 113 (342)
T PF06433_consen 36 GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQT--LSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQN 113 (342)
T ss_dssp ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTT--TEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEE
T ss_pred ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCc--CcccceEecCCcchheecccccceEEccCCcEEEEEc
Confidence 3345688999999998763 12588999653 22333222 11 1 11224679999999998764
Q ss_pred C--CCcEEEEecCCcc-ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCC
Q 003087 74 D--THTVYFFKANGEE-ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDP 139 (849)
Q Consensus 74 ~--dgtIrlWd~~g~~-~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~ 139 (849)
- -..|.|.|+..+. +..+. .+=+.++|.- ....|+.+..||.+....+..++
T Consensus 114 ~TPa~SVtVVDl~~~kvv~ei~-------~PGC~~iyP~-------~~~~F~~lC~DGsl~~v~Ld~~G 168 (342)
T PF06433_consen 114 FTPATSVTVVDLAAKKVVGEID-------TPGCWLIYPS-------GNRGFSMLCGDGSLLTVTLDADG 168 (342)
T ss_dssp ESSSEEEEEEETTTTEEEEEEE-------GTSEEEEEEE-------ETTEEEEEETTSCEEEEEETSTS
T ss_pred cCCCCeEEEEECCCCceeeeec-------CCCEEEEEec-------CCCceEEEecCCceEEEEECCCC
Confidence 3 4569999998554 32221 1223444421 11247778899999888887543
No 322
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.25 E-value=0.0043 Score=71.38 Aligned_cols=211 Identities=11% Similarity=0.133 Sum_probs=125.8
Q ss_pred CCCEEEEEECCCCC--EEEEEeCCCcEEEEecCCccc--eecccccccccccEEEEEecC-CcccccccceeEEEEeCCC
Q 003087 54 LGASIYGAWSESHD--VLGIVDDTHTVYFFKANGEEI--TRFTNKHLKVSLPIIGLIAQD-ETDVQRSCLCSFTVFTSDG 128 (849)
Q Consensus 54 ~~~v~~vafSPDG~--~LAs~~~dgtIrlWd~~g~~~--~~l~~~~~~~~~~V~~l~fs~-~~~~~~s~~~~~~~~s~Dg 128 (849)
...+.+++++.+.+ +||+|..+|.|-+-.+....- ....+++ .....+++|++ |....+.+ +.=.-.|-
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~---ar~Ct~lAwneLDtn~LAag---ldkhrnds 129 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGY---ARPCTSLAWNELDTNHLAAG---LDKHRNDS 129 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccc---cccccccccccccHHHHHhh---hhhhcccC
Confidence 45678999998776 899999999998876532210 1111221 24677888876 43322211 11123567
Q ss_pred cEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCc
Q 003087 129 FLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLEL 208 (849)
Q Consensus 129 ~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~ 208 (849)
.+.+||+.++-.... ..+.|++..-.+.+++.|-.|.+++.+|...+. +.+.|.....+
T Consensus 130 ~~~Iwdi~s~ltvPk-------e~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~-------------~~ifdlRqs~~- 188 (783)
T KOG1008|consen 130 SLKIWDINSLLTVPK-------ESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRS-------------VHIFDLRQSLD- 188 (783)
T ss_pred CccceecccccCCCc-------cccccccccccCccccccccCcchhhcccccch-------------hhhhhhhhhhh-
Confidence 799999976522111 112233333346789999999999887766542 55555442210
Q ss_pred ccceeccccceeeccCCCccccccceEEEcc-CCCEEEEEeCCCcEEEEecCCC-cccccccccccccccccccccCCCC
Q 003087 209 EQLYTTQIEGLYCEPKGHEVQLAHPKVLISP-QGKFVATSDTNGCLYIFEMDKD-NFSLSKFACGERFDLQVADSLFDGR 286 (849)
Q Consensus 209 ~~l~~~~~~~~~~~~~g~~h~~~V~~vafSP-DG~~LAs~s~Dgtv~LWd~~~~-~~~l~~~~~~~~~~~~~~~~l~~~~ 286 (849)
+-++ + .+..|..+.++| .+.++++-. ||.|-+||..-. .-.+.+... ++
T Consensus 189 ----~~~s---v-------nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~-------------~~- 239 (783)
T KOG1008|consen 189 ----SVSS---V-------NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILR-------------NE- 239 (783)
T ss_pred ----hhhh---h-------hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhh-------------CC-
Confidence 0000 0 234566788999 999999766 999999995321 111222110 00
Q ss_pred CCCCCCcEEEEEecC--CEEEE-EEeCCcEEEEEecC
Q 003087 287 TKPISDITDFAWWSD--NILIL-ARKSSIITMIDVLS 320 (849)
Q Consensus 287 ~~~~~~v~~vaws~D--~~la~-a~~dgti~lwdl~~ 320 (849)
+..+..+..++|.|- |.+++ .+.+++|+++++..
T Consensus 240 N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 240 NKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 122345788999984 55654 56788999999853
No 323
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.20 E-value=0.8 Score=51.48 Aligned_cols=70 Identities=19% Similarity=0.205 Sum_probs=44.1
Q ss_pred cCCCCeEEEEe----------CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccc
Q 003087 19 SPRGERVAVAA----------VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEI 88 (849)
Q Consensus 19 SPdG~~LAsas----------~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~ 88 (849)
||||+++..+. .+...|++...+. ...+.. ..+.+....|||||+.||.... +.|++++..+...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~---~~~l~~-~~~~~~~~~~sP~g~~~~~v~~-~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGE---ITPLTP-PPPKLQDAKWSPDGKYIAFVRD-NNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTE---EEESS--EETTBSEEEE-SSSTEEEEEET-TEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCc---eEECcC-CccccccceeecCCCeeEEEec-CceEEEECCCCCe
Confidence 89999998753 2345566765421 111111 1346678999999999999975 6899999865444
Q ss_pred eeccc
Q 003087 89 TRFTN 93 (849)
Q Consensus 89 ~~l~~ 93 (849)
.+++.
T Consensus 76 ~~lT~ 80 (353)
T PF00930_consen 76 TQLTT 80 (353)
T ss_dssp EESES
T ss_pred EEecc
Confidence 55543
No 324
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.19 E-value=0.18 Score=54.00 Aligned_cols=156 Identities=13% Similarity=0.075 Sum_probs=89.9
Q ss_pred ceEEEEEcCCCCeEEEEe--CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEe--cCCcc
Q 003087 12 KQVSLFISPRGERVAVAA--VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFK--ANGEE 87 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd--~~g~~ 87 (849)
.+.+.++||||+.+|... ++.-.||-...+. . ..... . ...+..-.|+|+|.+.+....++..+++. ..|+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~-~-~~~~~-~-g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG-P-VRPVL-T-GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC-c-ceeec-c-CCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 588999999999998876 5544555433221 1 11111 1 23677889999999999988888888884 33432
Q ss_pred c-eecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCc--ccccccccCCcceeccccCCceE
Q 003087 88 I-TRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSA--SISSASASSSGLTLRRQFPQNVI 164 (849)
Q Consensus 88 ~-~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~V~ 164 (849)
. ..+.. ......|.++.+|||+.-.+- +..-..++.|.+--+..+... ..+ .....+.......|.
T Consensus 101 ~~~~v~~--~~~~~~I~~l~vSpDG~RvA~----v~~~~~~~~v~va~V~r~~~g~~~~l-----~~~~~~~~~~~~~v~ 169 (253)
T PF10647_consen 101 EPVEVDW--PGLRGRITALRVSPDGTRVAV----VVEDGGGGRVYVAGVVRDGDGVPRRL-----TGPRRVAPPLLSDVT 169 (253)
T ss_pred eeEEecc--cccCCceEEEEECCCCcEEEE----EEecCCCCeEEEEEEEeCCCCCccee-----ccceEecccccCcce
Confidence 1 11111 111127999999998753220 111123566766666543221 111 111111111123699
Q ss_pred EEEEcCCCceEEEEecCC
Q 003087 165 CTDYHPELSLLSVVSNTD 182 (849)
Q Consensus 165 svafsPdg~lLas~g~d~ 182 (849)
+++|.+++++++.+...+
T Consensus 170 ~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 170 DVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred eeeecCCCEEEEEeCCCC
Confidence 999999999877655443
No 325
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.19 E-value=0.016 Score=66.70 Aligned_cols=69 Identities=7% Similarity=0.153 Sum_probs=54.5
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN 84 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~ 84 (849)
..|.+.++||+.+.|+.|. |++|++||...+ ...+.. ..=..+.++|+|||.++++|++.|.+.+||..
T Consensus 260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~----~t~~~k-a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDGSIILYDTTRG----VTLLAK-AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred CcceEEecCcccceEEEEecCCeEEEEEcCCC----eeeeee-ecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 5788999999999999996 899999996532 222221 11123689999999999999999999999975
No 326
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.19 E-value=0.26 Score=55.75 Aligned_cols=185 Identities=10% Similarity=0.053 Sum_probs=91.6
Q ss_pred CEEEEEeCCCcEEEEecC-CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCccccc
Q 003087 67 DVLGIVDDTHTVYFFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISS 145 (849)
Q Consensus 67 ~~LAs~~~dgtIrlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~ 145 (849)
..+..+..+|++..+|.. |+.+.+...........+..+.... ... .-.+..+++.+.+|.+..+|..+|+......
T Consensus 191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~-~~p-~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~ 268 (377)
T TIGR03300 191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVD-GDP-VVDGGQVYAVSYQGRVAALDLRSGRVLWKRD 268 (377)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccC-Ccc-EEECCEEEEEEcCCEEEEEECCCCcEEEeec
Confidence 466677788889888874 7655432211000000000000000 000 0012357777889999999998776432111
Q ss_pred ccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCC
Q 003087 146 ASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKG 225 (849)
Q Consensus 146 ~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g 225 (849)
. . ...+.+ .++..+++++.++ .|..++..++ +.++... ...+
T Consensus 269 ---------~----~-~~~~p~--~~~~~vyv~~~~G-------------~l~~~d~~tG---~~~W~~~------~~~~ 310 (377)
T TIGR03300 269 ---------A----S-SYQGPA--VDDNRLYVTDADG-------------VVVALDRRSG---SELWKND------ELKY 310 (377)
T ss_pred ---------c----C-CccCce--EeCCEEEEECCCC-------------eEEEEECCCC---cEEEccc------cccC
Confidence 0 0 111222 2344555555554 2555555433 1121110 0001
Q ss_pred CccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEE
Q 003087 226 HEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILI 305 (849)
Q Consensus 226 ~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la 305 (849)
..+.+..+ .|..|++++.+|.|.+||..+++. +++++.... .-...+ + ..|+.|.
T Consensus 311 ----~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~-~~~~~~~~~-------------~~~~sp----~-~~~~~l~ 365 (377)
T TIGR03300 311 ----RQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSF-VARLKTDGS-------------GIASPP----V-VVGDGLL 365 (377)
T ss_pred ----CccccCEE--ECCEEEEEeCCCEEEEEECCCCCE-EEEEEcCCC-------------ccccCC----E-EECCEEE
Confidence 01112222 577888999999999999988755 444432110 000111 1 2467898
Q ss_pred EEEeCCcEEEE
Q 003087 306 LARKSSIITMI 316 (849)
Q Consensus 306 ~a~~dgti~lw 316 (849)
+++.||.|..+
T Consensus 366 v~~~dG~l~~~ 376 (377)
T TIGR03300 366 VQTRDGDLYAF 376 (377)
T ss_pred EEeCCceEEEe
Confidence 99999988654
No 327
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.14 E-value=0.0069 Score=42.02 Aligned_cols=30 Identities=23% Similarity=0.515 Sum_probs=28.1
Q ss_pred cccccceEEEccCCCEEEEEeCCCcEEEEe
Q 003087 228 VQLAHPKVLISPQGKFVATSDTNGCLYIFE 257 (849)
Q Consensus 228 h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd 257 (849)
|...|.+++|+|+++++++++.||.+++|+
T Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 11 HTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 667899999999999999999999999996
No 328
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=96.13 E-value=0.025 Score=58.91 Aligned_cols=154 Identities=14% Similarity=0.143 Sum_probs=90.2
Q ss_pred EECCCCCEEEEEeCCCcEEEEecCCccceecccccccccccEEEEE-e-----cCCcccccccceeEEEEeCCCcEEEEE
Q 003087 61 AWSESHDVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLI-A-----QDETDVQRSCLCSFTVFTSDGFLHQIE 134 (849)
Q Consensus 61 afSPDG~~LAs~~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~-f-----s~~~~~~~s~~~~~~~~s~Dg~v~lw~ 134 (849)
+-|--|+.++++..||.+-+.+..- ...+.... ++..+. | +....... . .+-.+..-+.+..|+
T Consensus 96 ~~s~~~t~V~~~~~dg~~~v~s~~~--~~~~~~~i-----~~~~~~~as~~~~~~~~~i~s-~--~~g~~n~~d~~~a~~ 165 (319)
T KOG4714|consen 96 ACTMTDNRVCIGYADGSLAVFSTDK--DLALMSRI-----PSIHSGSASRKICRHGNSILS-G--GCGNWNAQDNFYANT 165 (319)
T ss_pred cccccCCceEecCCCceEEEEechH--HHhhhhhc-----ccccccccccceeecccEEec-C--CcceEeeccceeeec
Confidence 4455688899999999999887653 22221110 011110 0 01100000 0 122233344556676
Q ss_pred ecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceec
Q 003087 135 ISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTT 214 (849)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~ 214 (849)
+..-+..... . .--..|.+++-||.-+.++.+|.++ |. +.+|++.......
T Consensus 166 ~~p~~t~~~~-------~-----~~~~~v~~l~~hp~qq~~v~cgt~d----------g~--~~l~d~rn~~~p~----- 216 (319)
T KOG4714|consen 166 LDPIKTLIPS-------K-----KALDAVTALCSHPAQQHLVCCGTDD----------GI--VGLWDARNVAMPV----- 216 (319)
T ss_pred cccccccccc-------c-----cccccchhhhCCcccccEEEEecCC----------Ce--EEEEEcccccchH-----
Confidence 6543321110 0 1112499999999888776666665 33 7899987642111
Q ss_pred cccceeeccCCCccccccceEEEcc-CCCEEEEEeCCCcEEEEecCCC
Q 003087 215 QIEGLYCEPKGHEVQLAHPKVLISP-QGKFVATSDTNGCLYIFEMDKD 261 (849)
Q Consensus 215 ~~~~~~~~~~g~~h~~~V~~vafSP-DG~~LAs~s~Dgtv~LWd~~~~ 261 (849)
.++ +. |...++.|-|.| ++..|.+++.||.+--||..+.
T Consensus 217 ---S~l---~a--hk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~ 256 (319)
T KOG4714|consen 217 ---SLL---KA--HKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTT 256 (319)
T ss_pred ---HHH---HH--hhhhhhheeccCCCchheeEecCCCcEEEEcCCCc
Confidence 112 22 778999999998 7889999999999999998853
No 329
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.059 Score=59.98 Aligned_cols=213 Identities=13% Similarity=0.085 Sum_probs=120.1
Q ss_pred CCCCEEEEEeCCCcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeC-CCcEEEEEecCCCCcc
Q 003087 64 ESHDVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTS-DGFLHQIEISQDPSAS 142 (849)
Q Consensus 64 PDG~~LAs~~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~-Dg~v~lw~~~~~~~~~ 142 (849)
---+++.+|+.||.+++|...+-....+-.+...+...|.+++.+-++.. +.+.+. |..++++|+..-...+
T Consensus 18 tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L-------~~Sv~d~Dhs~KvfDvEn~Dmin 90 (558)
T KOG0882|consen 18 TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWL-------FRSVEDPDHSVKVFDVENFDMIN 90 (558)
T ss_pred ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcccccee-------EeeccCcccceeEEEeeccchhh
Confidence 35689999999999999987653333333332112223444443333322 333334 8899999986432222
Q ss_pred cccccccCCcceeccccCCceEEEEEcCCCc--eEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceecccccee
Q 003087 143 ISSASASSSGLTLRRQFPQNVICTDYHPELS--LLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLY 220 (849)
Q Consensus 143 ~~~~~~~~~~~~l~~~~~~~V~svafsPdg~--lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~ 220 (849)
.+. + ...|..+ +..++|... ++|++..+. |. |-+.|-.+ +..+. +.+
T Consensus 91 miK---------L-~~lPg~a-~wv~skGd~~s~IAVs~~~s----------g~--i~VvD~~~--d~~q~------~~f 139 (558)
T KOG0882|consen 91 MIK---------L-VDLPGFA-EWVTSKGDKISLIAVSLFKS----------GK--IFVVDGFG--DFCQD------GYF 139 (558)
T ss_pred hcc---------c-ccCCCce-EEecCCCCeeeeEEeecccC----------CC--cEEECCcC--CcCcc------cee
Confidence 211 1 1233323 333454322 444444443 32 44444332 22111 111
Q ss_pred eccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCccccccccccc---ccccccccccCCCCCCCCCCcEEEE
Q 003087 221 CEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGE---RFDLQVADSLFDGRTKPISDITDFA 297 (849)
Q Consensus 221 ~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~---~~~~~~~~~l~~~~~~~~~~v~~va 297 (849)
. + .|..+|.++..+|-|....|.+..|.|.-|..+.. . +++... ...+. .+.+. -.+....+.++.
T Consensus 140 k---k-lH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~-~---qfPr~~l~~~~K~e-TdLy~--f~K~Kt~pts~E 208 (558)
T KOG0882|consen 140 K---K-LHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGP-F---QFPRTNLNFELKHE-TDLYG--FPKAKTEPTSFE 208 (558)
T ss_pred c---c-cccCceEEEEeeccccceeeccccceeEeecCCCc-c---cCcccccccccccc-chhhc--ccccccCccceE
Confidence 1 1 28899999999999999999999999999998851 1 222110 00000 00000 012345578899
Q ss_pred EecCCE-EEEEEeCCcEEEEEecCCcccc
Q 003087 298 WWSDNI-LILARKSSIITMIDVLSGLKVK 325 (849)
Q Consensus 298 ws~D~~-la~a~~dgti~lwdl~~~~~l~ 325 (849)
|+|+|. +.....|..|+++.+++|+.++
T Consensus 209 fsp~g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 209 FSPDGAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred EccccCcccccCcccEEEEEEeccchhhh
Confidence 999986 6666799999999999998543
No 330
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.12 E-value=0.6 Score=52.76 Aligned_cols=66 Identities=12% Similarity=0.087 Sum_probs=44.0
Q ss_pred CCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEec
Q 003087 240 QGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVL 319 (849)
Q Consensus 240 DG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~ 319 (849)
+|..|..++.||.|..+|..+++. ++.... +.. .....++ + .++.+.+++.+|.|.++|..
T Consensus 278 ~~~~vyv~~~~G~l~~~d~~tG~~-~W~~~~-----------~~~--~~~ssp~--i---~g~~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 278 DDNRLYVTDADGVVVALDRRSGSE-LWKNDE-----------LKY--RQLTAPA--V---VGGYLVVGDFEGYLHWLSRE 338 (377)
T ss_pred eCCEEEEECCCCeEEEEECCCCcE-EEcccc-----------ccC--CccccCE--E---ECCEEEEEeCCCEEEEEECC
Confidence 677788888999999999988754 333210 000 0011111 1 36678889999999999999
Q ss_pred CCccc
Q 003087 320 SGLKV 324 (849)
Q Consensus 320 ~~~~l 324 (849)
+|+.+
T Consensus 339 tG~~~ 343 (377)
T TIGR03300 339 DGSFV 343 (377)
T ss_pred CCCEE
Confidence 88854
No 331
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=96.05 E-value=0.062 Score=56.06 Aligned_cols=73 Identities=12% Similarity=0.169 Sum_probs=55.1
Q ss_pred cccceEEEccCC-CEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCC--EEEE
Q 003087 230 LAHPKVLISPQG-KFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDN--ILIL 306 (849)
Q Consensus 230 ~~V~~vafSPDG-~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~--~la~ 306 (849)
++|.+++-.|.- +++++|+.||.+.|||..+.......+. .|...++.|.|.|-+ .|.+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~------------------ahk~~i~eV~FHpk~p~~Lft 241 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLK------------------AHKAEIWEVHFHPKNPEHLFT 241 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHH------------------HhhhhhhheeccCCCchheeE
Confidence 458888888854 5577788899999999987643222221 355678999999843 5889
Q ss_pred EEeCCcEEEEEecC
Q 003087 307 ARKSSIITMIDVLS 320 (849)
Q Consensus 307 a~~dgti~lwdl~~ 320 (849)
++.||.+..||-.+
T Consensus 242 ~sedGslw~wdas~ 255 (319)
T KOG4714|consen 242 CSEDGSLWHWDAST 255 (319)
T ss_pred ecCCCcEEEEcCCC
Confidence 99999999999775
No 332
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.02 E-value=0.17 Score=60.29 Aligned_cols=140 Identities=12% Similarity=0.040 Sum_probs=84.1
Q ss_pred CCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCC-----CCEEEEEeCCCcEEEEecC--Cccceecc
Q 003087 21 RGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSES-----HDVLGIVDDTHTVYFFKAN--GEEITRFT 92 (849)
Q Consensus 21 dG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPD-----G~~LAs~~~dgtIrlWd~~--g~~~~~l~ 92 (849)
+|+++||+| ||+|.|-...++ ..+..+.. +-.+.+||++|| .+..++||.-| +.+..-+ |+.....
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~--~~~~~~df--~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~- 155 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTD--DEITQYDF--KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVV- 155 (846)
T ss_pred CCceEEEecCCCcEEEeeccCC--ccceeEec--CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcccee-
Confidence 599999999 567888765432 22222221 456889999999 67888898888 7777543 5543221
Q ss_pred cccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCC
Q 003087 93 NKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPEL 172 (849)
Q Consensus 93 ~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg 172 (849)
.+.. .++|.++.+.- .+..|..|--|+++|+.++......+.. . ... .....-..+.|.++.
T Consensus 156 l~~~--eG~I~~i~W~g----------~lIAWand~Gv~vyd~~~~~~l~~i~~p--~--~~~--R~e~fpphl~W~~~~ 217 (846)
T KOG2066|consen 156 LSEG--EGPIHSIKWRG----------NLIAWANDDGVKVYDTPTRQRLTNIPPP--S--QSV--RPELFPPHLHWQDED 217 (846)
T ss_pred eecC--ccceEEEEecC----------cEEEEecCCCcEEEeccccceeeccCCC--C--CCC--CcccCCCceEecCCC
Confidence 1111 25677777432 3666677777999998776543222200 0 000 011234678899988
Q ss_pred ceEEEEecCCCCcc
Q 003087 173 SLLSVVSNTDTSSL 186 (849)
Q Consensus 173 ~lLas~g~d~t~~~ 186 (849)
+++ .|+.+++++
T Consensus 218 ~LV--IGW~d~v~i 229 (846)
T KOG2066|consen 218 RLV--IGWGDSVKI 229 (846)
T ss_pred eEE--EecCCeEEE
Confidence 765 467765433
No 333
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.96 E-value=1.5 Score=46.84 Aligned_cols=167 Identities=11% Similarity=0.055 Sum_probs=81.3
Q ss_pred CCEEEEEECCCCCEEEEEe---CCCcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEE
Q 003087 55 GASIYGAWSESHDVLGIVD---DTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLH 131 (849)
Q Consensus 55 ~~v~~vafSPDG~~LAs~~---~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~ 131 (849)
..+.+.|+||||+.+|... ....++++...+.....+... .+..-.|++++ ..|. +...++..+
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~------~l~~PS~d~~g-~~W~------v~~~~~~~~ 90 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGG------SLTRPSWDPDG-WVWT------VDDGSGGVR 90 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCC------ccccccccCCC-CEEE------EEcCCCceE
Confidence 4678999999999998766 344566655444332222211 23333344432 1221 113444455
Q ss_pred EEEe-cCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCc-c
Q 003087 132 QIEI-SQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLEL-E 209 (849)
Q Consensus 132 lw~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~-~ 209 (849)
++.. ..+..... . .... .....|.++++||||..+|....++. .+. |.+=.+....+. .
T Consensus 91 ~~~~~~~g~~~~~-~-------v~~~-~~~~~I~~l~vSpDG~RvA~v~~~~~--------~~~--v~va~V~r~~~g~~ 151 (253)
T PF10647_consen 91 VVRDSASGTGEPV-E-------VDWP-GLRGRITALRVSPDGTRVAVVVEDGG--------GGR--VYVAGVVRDGDGVP 151 (253)
T ss_pred EEEecCCCcceeE-E-------eccc-ccCCceEEEEECCCCcEEEEEEecCC--------CCe--EEEEEEEeCCCCCc
Confidence 5532 12221110 0 0000 01115999999999999988774431 021 222222111111 1
Q ss_pred c-ceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCc-EEE-EecCC
Q 003087 210 Q-LYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGC-LYI-FEMDK 260 (849)
Q Consensus 210 ~-l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgt-v~L-Wd~~~ 260 (849)
. +... +..... ....+..++|++++++++.+...+. +.. ....+
T Consensus 152 ~~l~~~-----~~~~~~--~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG 198 (253)
T PF10647_consen 152 RRLTGP-----RRVAPP--LLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDG 198 (253)
T ss_pred ceeccc-----eEeccc--ccCcceeeeecCCCEEEEEeCCCCCceeEEEEccC
Confidence 1 1110 000001 2357889999999999887765544 433 44444
No 334
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.95 E-value=0.021 Score=39.47 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=26.9
Q ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEEe
Q 003087 54 LGASIYGAWSESHDVLGIVDDTHTVYFFK 82 (849)
Q Consensus 54 ~~~v~~vafSPDG~~LAs~~~dgtIrlWd 82 (849)
...+.++.|+|+++++++++.||++++|+
T Consensus 12 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 12 TGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred CCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 46789999999999999999999999996
No 335
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=95.83 E-value=0.069 Score=62.96 Aligned_cols=115 Identities=19% Similarity=0.251 Sum_probs=76.1
Q ss_pred eEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccC--
Q 003087 163 VICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQ-- 240 (849)
Q Consensus 163 V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPD-- 240 (849)
-++++|+|.| ++|-|+..- |.+=|..+ ++.|.+ + .- |+..|.+|.|+|-
T Consensus 18 ~~A~Dw~~~G-LiAygshsl--------------V~VVDs~s---~q~iqs------i---e~--h~s~V~~VrWap~~~ 68 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSHSL--------------VSVVDSRS---LQLIQS------I---EL--HQSAVTSVRWAPAPS 68 (1062)
T ss_pred ccccccCccc-eEEEecCce--------------EEEEehhh---hhhhhc------c---cc--CccceeEEEeccCCC
Confidence 6889999999 566665442 55544332 222211 1 11 7788999998872
Q ss_pred ----CC------EEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEec---CCE--EE
Q 003087 241 ----GK------FVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWS---DNI--LI 305 (849)
Q Consensus 241 ----G~------~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~---D~~--la 305 (849)
+. +||+++..|.|-|||.... ....|- + .+..++-++.|-+ |.+ ++
T Consensus 69 p~~llS~~~~~lliAsaD~~GrIil~d~~~~--s~~~~l-------------~----~~~~~~qdl~W~~~rd~Srd~Ll 129 (1062)
T KOG1912|consen 69 PRDLLSPSSSQLLIASADISGRIILVDFVLA--SVINWL-------------S----HSNDSVQDLCWVPARDDSRDVLL 129 (1062)
T ss_pred chhccCccccceeEEeccccCcEEEEEehhh--hhhhhh-------------c----CCCcchhheeeeeccCcchheeE
Confidence 22 5999999999999999876 223332 1 2335677787765 343 55
Q ss_pred EEEeCCcEEEEEecCCcccc
Q 003087 306 LARKSSIITMIDVLSGLKVK 325 (849)
Q Consensus 306 ~a~~dgti~lwdl~~~~~l~ 325 (849)
+-....+|.+|+..+|+++-
T Consensus 130 aIh~ss~lvLwntdtG~k~W 149 (1062)
T KOG1912|consen 130 AIHGSSTLVLWNTDTGEKFW 149 (1062)
T ss_pred EecCCcEEEEEEccCCceee
Confidence 55678899999999998653
No 336
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.73 E-value=2.1 Score=45.69 Aligned_cols=218 Identities=14% Similarity=0.122 Sum_probs=97.7
Q ss_pred CCCEEEEEECCCCC-EEEEEeCCCcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEe-CCCcEE
Q 003087 54 LGASIYGAWSESHD-VLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFT-SDGFLH 131 (849)
Q Consensus 54 ~~~v~~vafSPDG~-~LAs~~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s-~Dg~v~ 131 (849)
...+..|+|.||++ +.|+.+..+.|.-.+.+|+.+.++.-.. ....-+|++..++ .+++.+ .++.+.
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g---~~D~EgI~y~g~~--------~~vl~~Er~~~L~ 89 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDG---FGDYEGITYLGNG--------RYVLSEERDQRLY 89 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS----SSEEEEEE-STT--------EEEEEETTTTEEE
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCC---CCCceeEEEECCC--------EEEEEEcCCCcEE
Confidence 45689999999855 5566777888877788888776664321 1235566653322 244434 378888
Q ss_pred EEEecCCCC-cccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCccc
Q 003087 132 QIEISQDPS-ASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQ 210 (849)
Q Consensus 132 lw~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~ 210 (849)
..++..... ..... .......+......++-.++|.|.++.|.++=..+. .+++.+.+......
T Consensus 90 ~~~~~~~~~~~~~~~--~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P-------------~~l~~~~~~~~~~~ 154 (248)
T PF06977_consen 90 IFTIDDDTTSLDRAD--VQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKP-------------KRLYEVNGFPGGFD 154 (248)
T ss_dssp EEEE----TT--EEE--EEEEE---S---SS--EEEEEETTTTEEEEEEESSS-------------EEEEEEESTT-SS-
T ss_pred EEEEeccccccchhh--ceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCC-------------hhhEEEccccCccc
Confidence 888843221 11100 000001111122347999999998777766633331 34555554110001
Q ss_pred ceeccccceeeccCCCccccccceEEEccCC-CEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCC
Q 003087 211 LYTTQIEGLYCEPKGHEVQLAHPKVLISPQG-KFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKP 289 (849)
Q Consensus 211 l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG-~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 289 (849)
+.......... .+. ....+.+++|.|.. .+++-.+.+..|-..|..+. .+..+.+.. +.+.|. ..
T Consensus 155 ~~~~~~~~~~~-~~~--~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~--~~~~~~L~~-----g~~gl~----~~ 220 (248)
T PF06977_consen 155 LFVSDDQDLDD-DKL--FVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGR--VVSSLSLDR-----GFHGLS----KD 220 (248)
T ss_dssp -EEEE-HHHH--HT----SS---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEEE-ST-----TGGG-S----S-
T ss_pred eeecccccccc-ccc--eeccccceEEcCCCCeEEEEECCCCeEEEECCCCC--EEEEEEeCC-----cccCcc----cc
Confidence 10000000000 000 12345678888864 55666667788888886654 233333211 000111 11
Q ss_pred CCCcEEEEEecCCEEEEEEeCC
Q 003087 290 ISDITDFAWWSDNILILARKSS 311 (849)
Q Consensus 290 ~~~v~~vaws~D~~la~a~~dg 311 (849)
....-.|||-+||.|-+.+.-+
T Consensus 221 ~~QpEGIa~d~~G~LYIvsEpN 242 (248)
T PF06977_consen 221 IPQPEGIAFDPDGNLYIVSEPN 242 (248)
T ss_dssp --SEEEEEE-TT--EEEEETTT
T ss_pred cCCccEEEECCCCCEEEEcCCc
Confidence 2345678999999887777543
No 337
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.62 E-value=0.49 Score=56.81 Aligned_cols=104 Identities=13% Similarity=0.120 Sum_probs=56.6
Q ss_pred CCEEEEEECCCCCEEEEEe------CCCcEEEE--ecCCccceecccccccccccEEEEEecCCcccccccc-e-e-EEE
Q 003087 55 GASIYGAWSESHDVLGIVD------DTHTVYFF--KANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCL-C-S-FTV 123 (849)
Q Consensus 55 ~~v~~vafSPDG~~LAs~~------~dgtIrlW--d~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~-~-~-~~~ 123 (849)
..+.+.+.||||+.+|... .|+.-+|| +..|.. ..+.... ....-.|+|++...|... . . .++
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~g~-----~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLEGH-----SLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeecCC-----CCCCceECCCCCceEEEecCcceEEE
Confidence 3567899999999999776 34444455 544433 3333221 233455677655444210 0 1 111
Q ss_pred Ee--CCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEe
Q 003087 124 FT--SDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVS 179 (849)
Q Consensus 124 ~s--~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g 179 (849)
.. ..|.+.+..+..+.... ..+..|.+++|||||+.+|...
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~---------------~~~g~Issl~wSpDG~RiA~i~ 466 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS---------------RVPGPISELQLSRDGVRAAMII 466 (591)
T ss_pred eccCCCceEEEEeccCchhhh---------------ccCCCcCeEEECCCCCEEEEEE
Confidence 11 22334333443322210 1234699999999999998765
No 338
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.51 E-value=0.034 Score=43.18 Aligned_cols=35 Identities=14% Similarity=0.309 Sum_probs=31.6
Q ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccc
Q 003087 54 LGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEI 88 (849)
Q Consensus 54 ~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~ 88 (849)
...|..++|||...+||.|..+|.|.|+.++|+.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCcCc
Confidence 45689999999999999999999999999988764
No 339
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.42 E-value=0.15 Score=60.73 Aligned_cols=72 Identities=18% Similarity=0.170 Sum_probs=55.9
Q ss_pred ceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC--Cc
Q 003087 12 KQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN--GE 86 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~--g~ 86 (849)
.+.|+.|.|.--.||+|- .+.+.+|...+. ...+....+...+..+.|||||..|.+++.-|.|++|..+ |+
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~---e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~ 135 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTT---ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGE 135 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCc---eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccc
Confidence 457899999988899986 478889986532 1222222346788999999999999999999999999876 54
No 340
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.17 E-value=0.16 Score=58.40 Aligned_cols=147 Identities=14% Similarity=0.104 Sum_probs=78.6
Q ss_pred CEEEEEECCCCCEEEEEe---CC-CcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEE
Q 003087 56 ASIYGAWSESHDVLGIVD---DT-HTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLH 131 (849)
Q Consensus 56 ~v~~vafSPDG~~LAs~~---~d-gtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~ 131 (849)
.+..-+|||||+.|+..+ .. ..+.++++++.....+..- ...-..-+|+||+... +++...||...
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~----~g~~~~P~fspDG~~l------~f~~~rdg~~~ 263 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF----NGNNGAPAFSPDGSKL------AFSSSRDGSPD 263 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc----CCccCCccCCCCCCEE------EEEECCCCCcc
Confidence 345679999999998653 22 3588888874332222111 1112234667766432 34446778777
Q ss_pred EEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEec--CCcCcc
Q 003087 132 QIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRC--HNLELE 209 (849)
Q Consensus 132 lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~--~~~~~~ 209 (849)
+|-........ ..|... ...-..=.|||||+.++-++..+ |.- .+|.++ ++. .+
T Consensus 264 iy~~dl~~~~~----------~~Lt~~-~gi~~~Ps~spdG~~ivf~Sdr~----------G~p--~I~~~~~~g~~-~~ 319 (425)
T COG0823 264 IYLMDLDGKNL----------PRLTNG-FGINTSPSWSPDGSKIVFTSDRG----------GRP--QIYLYDLEGSQ-VT 319 (425)
T ss_pred EEEEcCCCCcc----------eecccC-CccccCccCCCCCCEEEEEeCCC----------CCc--ceEEECCCCCc-ee
Confidence 66654322210 011111 11123567999999998775543 432 445544 321 11
Q ss_pred cceeccccceeeccCCCccccccceEEEccCCCEEEEEeCC
Q 003087 210 QLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTN 250 (849)
Q Consensus 210 ~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~D 250 (849)
++. . .+ ..-..-.+||||++||..+.+
T Consensus 320 riT-~---------~~----~~~~~p~~SpdG~~i~~~~~~ 346 (425)
T COG0823 320 RLT-F---------SG----GGNSNPVWSPDGDKIVFESSS 346 (425)
T ss_pred Eee-c---------cC----CCCcCccCCCCCCEEEEEecc
Confidence 121 1 01 111256789999999988854
No 341
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.16 E-value=3.3 Score=49.60 Aligned_cols=40 Identities=28% Similarity=0.404 Sum_probs=33.7
Q ss_pred cCCHHHHHHHHHcccCHHHHHHHHHHhCCCh---hHHHHHHHhc
Q 003087 387 ERSVPEMYNILISHRNYQTAIDFANYHGLDT---DEVLKSQWLN 427 (849)
Q Consensus 387 ~~tp~e~~~~~i~~~~~~~A~~lA~~~~ld~---d~Vyk~~w~~ 427 (849)
..+-+-+.+|++..|.|..|.+.|...|+.. |.||. .|..
T Consensus 437 ~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~-~Wa~ 479 (829)
T KOG2280|consen 437 HLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLL-EWAR 479 (829)
T ss_pred hhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHH-HHHH
Confidence 3445678899999999999999999999988 99997 3653
No 342
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.11 E-value=0.23 Score=58.76 Aligned_cols=74 Identities=9% Similarity=0.052 Sum_probs=43.7
Q ss_pred CEEEEEECCCCCEEEEEeC-CCcEEEEecCCcc-ce--ecccc-----ccccc-ccEEEEEecCCcccccccceeEEEEe
Q 003087 56 ASIYGAWSESHDVLGIVDD-THTVYFFKANGEE-IT--RFTNK-----HLKVS-LPIIGLIAQDETDVQRSCLCSFTVFT 125 (849)
Q Consensus 56 ~v~~vafSPDG~~LAs~~~-dgtIrlWd~~g~~-~~--~l~~~-----~~~~~-~~V~~l~fs~~~~~~~s~~~~~~~~s 125 (849)
..+.+++||||+++.+++. +++|.|+|+.... .+ .+... ...+. .+. -.+|.+++.+ +.++-
T Consensus 322 sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPL-HTaFDg~G~a-------ytslf 393 (635)
T PRK02888 322 NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPL-HTAFDGRGNA-------YTTLF 393 (635)
T ss_pred CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcc-eEEECCCCCE-------EEeEe
Confidence 3467999999999887654 8999999986421 11 00000 00000 111 3455444322 44556
Q ss_pred CCCcEEEEEecC
Q 003087 126 SDGFLHQIEISQ 137 (849)
Q Consensus 126 ~Dg~v~lw~~~~ 137 (849)
.|..|-.||+.+
T Consensus 394 ~dsqv~kwn~~~ 405 (635)
T PRK02888 394 LDSQIVKWNIEA 405 (635)
T ss_pred ecceeEEEehHH
Confidence 788899999875
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.98 E-value=0.22 Score=57.58 Aligned_cols=138 Identities=14% Similarity=0.087 Sum_probs=71.5
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEE-e
Q 003087 57 SIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIE-I 135 (849)
Q Consensus 57 v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~-~ 135 (849)
..++.+||+|+++++++ ||.-.|....+-. .... ..-.+.+| ...+.+++...+++|.++. +
T Consensus 35 p~~ls~npngr~v~V~g-~geY~iyt~~~~r--~k~~------G~g~~~vw--------~~~n~yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVCG-DGEYEIYTALAWR--NKAF------GSGLSFVW--------SSRNRYAVLESSSTIKIYKNF 97 (443)
T ss_dssp -SEEEE-TTSSEEEEEE-TTEEEEEETTTTE--EEEE------EE-SEEEE---------TSSEEEEE-TTS-EEEEETT
T ss_pred CeeEEECCCCCEEEEEc-CCEEEEEEccCCc--cccc------CceeEEEE--------ecCccEEEEECCCeEEEEEcC
Confidence 46899999999999954 5666676633211 1000 01123333 3334588888888898863 3
Q ss_pred cCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceecc
Q 003087 136 SQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQ 215 (849)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~ 215 (849)
..... ++++ .+..+..+-. |.+|.+.+.+. |.+||..+.. .+...
T Consensus 98 ~~~~~------------k~i~--~~~~~~~If~---G~LL~~~~~~~--------------i~~yDw~~~~---~i~~i- 142 (443)
T PF04053_consen 98 KNEVV------------KSIK--LPFSVEKIFG---GNLLGVKSSDF--------------ICFYDWETGK---LIRRI- 142 (443)
T ss_dssp EE-TT-------------------SS-EEEEE----SSSEEEEETTE--------------EEEE-TTT-----EEEEE-
T ss_pred ccccc------------eEEc--CCcccceEEc---CcEEEEECCCC--------------EEEEEhhHcc---eeeEE-
Confidence 21110 1111 1112344433 99998876663 8899987642 11111
Q ss_pred ccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecC
Q 003087 216 IEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMD 259 (849)
Q Consensus 216 ~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~ 259 (849)
.-.+|..|.|||||+++|-.+ +.++.|.+.+
T Consensus 143 ------------~v~~vk~V~Ws~~g~~val~t-~~~i~il~~~ 173 (443)
T PF04053_consen 143 ------------DVSAVKYVIWSDDGELVALVT-KDSIYILKYN 173 (443)
T ss_dssp ------------SS-E-EEEEE-TTSSEEEEE--S-SEEEEEE-
T ss_pred ------------ecCCCcEEEEECCCCEEEEEe-CCeEEEEEec
Confidence 123488999999999999886 5577787665
No 344
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=0.12 Score=60.03 Aligned_cols=73 Identities=12% Similarity=0.180 Sum_probs=52.0
Q ss_pred ceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Ccc
Q 003087 12 KQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEE 87 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~ 87 (849)
.+.-+-|+|.=.++|.+. +|.+.|-+.. .++ +-++..++.+..++++|-|||++||+|-.||||++-|+. |..
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qR-lwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN--WQR-LWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec--cce-eEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 466788999999999996 5666655433 122 222221233333599999999999999999999999997 443
No 345
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.68 E-value=3.4 Score=47.49 Aligned_cols=66 Identities=17% Similarity=0.223 Sum_probs=49.8
Q ss_pred EEEECCCCCEEEEEeCC----------C-cEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCC
Q 003087 59 YGAWSESHDVLGIVDDT----------H-TVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSD 127 (849)
Q Consensus 59 ~vafSPDG~~LAs~~~d----------g-tIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~D 127 (849)
.+|-+|.|.-+|...++ . .|++++..|+.+..+.-.. ..|.++.|.+ ++.+.+...|
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~ll~~i~w~~----~~iv~~~wt~--------~e~LvvV~~d 100 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKLLSSIPWDS----GRIVGMGWTD--------DEELVVVQSD 100 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCCEeEEEEECC----CCEEEEEECC--------CCeEEEEEcC
Confidence 57888888888887665 1 4999999999887765433 4577788754 2357778999
Q ss_pred CcEEEEEec
Q 003087 128 GFLHQIEIS 136 (849)
Q Consensus 128 g~v~lw~~~ 136 (849)
|+++++|+.
T Consensus 101 G~v~vy~~~ 109 (410)
T PF04841_consen 101 GTVRVYDLF 109 (410)
T ss_pred CEEEEEeCC
Confidence 999999975
No 346
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.62 E-value=4.3 Score=49.18 Aligned_cols=199 Identities=12% Similarity=0.083 Sum_probs=106.9
Q ss_pred EEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCC-CEEEEEeCCC-----cEEEEecC---C
Q 003087 16 LFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESH-DVLGIVDDTH-----TVYFFKAN---G 85 (849)
Q Consensus 16 lafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG-~~LAs~~~dg-----tIrlWd~~---g 85 (849)
=.|||.|..||.|+ +|.|.+.+.. .+.+.-++...++ +...-|.-++ .+|++.+.|+ .|++|+++ +
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s---~~~~~~fqa~~~s-iv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSS---FQLIRGFQAYEQS-IVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred eEEcCCCceEEEeeccccEEEeccc---ceeeehheecchh-hhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence 35899999999998 6788777632 1111223321122 2223344444 6788766554 59999985 2
Q ss_pred c---cce---eccccc-ccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEec--CCCCcccccccccCCcceec
Q 003087 86 E---EIT---RFTNKH-LKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEIS--QDPSASISSASASSSGLTLR 156 (849)
Q Consensus 86 ~---~~~---~l~~~~-~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~--~~~~~~~~~~~~~~~~~~l~ 156 (849)
+ ++. ++.++. ..-.+++..++.+.+ +..++++=.||.|..+.-. .+..... ..+..
T Consensus 105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~-------l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~--------~~~~~ 169 (933)
T KOG2114|consen 105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSED-------LKTIVCGFTNGLVICYKGDILRDRGSRQ--------DYSHR 169 (933)
T ss_pred CCCcceeeeeeeeccCCCCCCCcceEEEEEcc-------ccEEEEEecCcEEEEEcCcchhccccce--------eeecc
Confidence 2 222 222211 111245566665543 1235555578888776421 1111000 01111
Q ss_pred cccCCceEEEEEcCCCce-EEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceE
Q 003087 157 RQFPQNVICTDYHPELSL-LSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKV 235 (849)
Q Consensus 157 ~~~~~~V~svafsPdg~l-Las~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~v 235 (849)
| ..+|++++|--||+. +.++.... |.++.+.+.. . .+. .+.. |..++++.
T Consensus 170 ~--~~pITgL~~~~d~~s~lFv~Tt~~--------------V~~y~l~gr~-p-~~~------~ld~-----~G~~lnCs 220 (933)
T KOG2114|consen 170 G--KEPITGLALRSDGKSVLFVATTEQ--------------VMLYSLSGRT-P-SLK------VLDN-----NGISLNCS 220 (933)
T ss_pred C--CCCceeeEEecCCceeEEEEecce--------------eEEEEecCCC-c-cee------eecc-----CCccceee
Confidence 1 247999999999998 33333332 6777777542 0 010 1111 44588899
Q ss_pred EEccCCCEEEEEeCCCcEEEEecCCCcc
Q 003087 236 LISPQGKFVATSDTNGCLYIFEMDKDNF 263 (849)
Q Consensus 236 afSPDG~~LAs~s~Dgtv~LWd~~~~~~ 263 (849)
+|++-...+.+++ +.-|.+++.++.+.
T Consensus 221 s~~~~t~qfIca~-~e~l~fY~sd~~~~ 247 (933)
T KOG2114|consen 221 SFSDGTYQFICAG-SEFLYFYDSDGRGP 247 (933)
T ss_pred ecCCCCccEEEec-CceEEEEcCCCcce
Confidence 9987666355444 45688999987643
No 347
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=94.52 E-value=0.16 Score=61.00 Aligned_cols=156 Identities=19% Similarity=0.187 Sum_probs=88.5
Q ss_pred CCCCEEEEEeCCCcEEEEecCCcc-ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcc
Q 003087 64 ESHDVLGIVDDTHTVYFFKANGEE-ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSAS 142 (849)
Q Consensus 64 PDG~~LAs~~~dgtIrlWd~~g~~-~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~ 142 (849)
.++++|-+|+..|+|-|=|.+.-+ +.++..|. ..|..+..+.+..++-.+...+...--|.+|++||+..-+...
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs----~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~ 260 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS----GSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS 260 (1118)
T ss_pred ecCcEEEeecccceEEeecCCcCceeeeeeccc----cceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccC
Confidence 478999999999999999987543 44443332 3444333332222222221222233457789999987533322
Q ss_pred cccccccCCcceeccccCCceEEEEEcCCCc-eEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceee
Q 003087 143 ISSASASSSGLTLRRQFPQNVICTDYHPELS-LLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYC 221 (849)
Q Consensus 143 ~~~~~~~~~~~~l~~~~~~~V~svafsPdg~-lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~ 221 (849)
-+. + +.+-.=+.|+|.-. .+|+++..+ + ..+=+..+-.+ + ..+.+.
T Consensus 261 PI~---------~----~~~P~flrf~Psl~t~~~V~S~sG-----------q--~q~vd~~~lsN--P-----~~~~~~ 307 (1118)
T KOG1275|consen 261 PIQ---------F----PYGPQFLRFHPSLTTRLAVTSQSG-----------Q--FQFVDTATLSN--P-----PAGVKM 307 (1118)
T ss_pred Ccc---------c----ccCchhhhhcccccceEEEEeccc-----------c--eeeccccccCC--C-----ccceeE
Confidence 111 1 11223467888755 456666654 2 23333211100 0 011111
Q ss_pred -ccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003087 222 -EPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKD 261 (849)
Q Consensus 222 -~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~ 261 (849)
.+ .+..+.++.|||.|+.||.++.+|.|.+|. +..
T Consensus 308 v~p----~~s~i~~fDiSsn~~alafgd~~g~v~~wa-~~~ 343 (1118)
T KOG1275|consen 308 VNP----NGSGISAFDISSNGDALAFGDHEGHVNLWA-DRP 343 (1118)
T ss_pred Ecc----CCCcceeEEecCCCceEEEecccCcEeeec-CCC
Confidence 12 235688999999999999999999999997 443
No 348
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=94.46 E-value=0.13 Score=61.17 Aligned_cols=108 Identities=17% Similarity=0.258 Sum_probs=72.7
Q ss_pred EEEECCCCCEEEEEe----CCCcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEE
Q 003087 59 YGAWSESHDVLGIVD----DTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIE 134 (849)
Q Consensus 59 ~vafSPDG~~LAs~~----~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~ 134 (849)
-..|.|..-++|+++ +.|.|.++--+|+.-+.... ...+.++.|.|...+.+++ =.-|.+.+|+
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~-----P~hatSLCWHpe~~vLa~g-------we~g~~~v~~ 87 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTY-----PVHATSLCWHPEEFVLAQG-------WEMGVSDVQK 87 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEecCCCCCccccc-----ceehhhhccChHHHHHhhc-------cccceeEEEe
Confidence 467888888888876 45788888777874332221 1234578888865544432 3567889998
Q ss_pred ecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEec
Q 003087 135 ISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRC 203 (849)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~ 203 (849)
..+.+....- -.|+..|..+.|||+|..|.++..-+ .|.+|+.+
T Consensus 88 ~~~~e~htv~------------~th~a~i~~l~wS~~G~~l~t~d~~g-------------~v~lwr~d 131 (1416)
T KOG3617|consen 88 TNTTETHTVV------------ETHPAPIQGLDWSHDGTVLMTLDNPG-------------SVHLWRYD 131 (1416)
T ss_pred cCCceeeeec------------cCCCCCceeEEecCCCCeEEEcCCCc-------------eeEEEEee
Confidence 7654432221 14567899999999999998875554 37889887
No 349
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.42 E-value=5.9 Score=43.50 Aligned_cols=243 Identities=11% Similarity=0.084 Sum_probs=104.9
Q ss_pred cceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeec-C---CCCEEEEEECCCCCEEEEEeCCCcEEEEecCCc
Q 003087 11 KKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCT-G---LGASIYGAWSESHDVLGIVDDTHTVYFFKANGE 86 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~-~---~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~ 86 (849)
..+.+|+|.-+.+-.|+|..++| +...|+ +..=...... . .-...+|.|..+ +..++|. .|.| +-..+|.
T Consensus 17 ~~l~dV~F~d~~~G~~VG~~g~i--l~T~DG-G~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG~-~g~l-l~T~DgG 90 (302)
T PF14870_consen 17 KPLLDVAFVDPNHGWAVGAYGTI--LKTTDG-GKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVGE-PGLL-LHTTDGG 90 (302)
T ss_dssp S-EEEEEESSSS-EEEEETTTEE--EEESST-TSS-EE-----S-----EEEEEEEETT-EEEEEEE-TTEE-EEESSTT
T ss_pred CceEEEEEecCCEEEEEecCCEE--EEECCC-CccccccccCCCccceeeEEEEEecCC-ceEEEcC-CceE-EEecCCC
Confidence 36899999977788888877753 433332 1111111110 1 123568888743 4455544 4543 3334443
Q ss_pred cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT 166 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv 166 (849)
.-................+.+.++.. ..+.+..|.| |....++.. ... +.......++.+
T Consensus 91 ~tW~~v~l~~~lpgs~~~i~~l~~~~--------~~l~~~~G~i--y~T~DgG~t-W~~---------~~~~~~gs~~~~ 150 (302)
T PF14870_consen 91 KTWERVPLSSKLPGSPFGITALGDGS--------AELAGDRGAI--YRTTDGGKT-WQA---------VVSETSGSINDI 150 (302)
T ss_dssp SS-EE----TT-SS-EEEEEEEETTE--------EEEEETT--E--EEESSTTSS-EEE---------EE-S----EEEE
T ss_pred CCcEEeecCCCCCCCeeEEEEcCCCc--------EEEEcCCCcE--EEeCCCCCC-eeE---------cccCCcceeEeE
Confidence 21211110000111222333222111 1222444433 332222221 100 001112358999
Q ss_pred EEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEE
Q 003087 167 DYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVAT 246 (849)
Q Consensus 167 afsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs 246 (849)
..++||+++|+++.-. ...-|+.-.. .+.+. ... .+..|.+|.|+|||.+...
T Consensus 151 ~r~~dG~~vavs~~G~-------------~~~s~~~G~~-----~w~~~-------~r~--~~~riq~~gf~~~~~lw~~ 203 (302)
T PF14870_consen 151 TRSSDGRYVAVSSRGN-------------FYSSWDPGQT-----TWQPH-------NRN--SSRRIQSMGFSPDGNLWML 203 (302)
T ss_dssp EE-TTS-EEEEETTSS-------------EEEEE-TT-S-----S-EEE-------E----SSS-EEEEEE-TTS-EEEE
T ss_pred EECCCCcEEEEECccc-------------EEEEecCCCc-----cceEE-------ccC--ccceehhceecCCCCEEEE
Confidence 9999999987753332 2334543211 11000 001 2357889999999998774
Q ss_pred EeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecCCc
Q 003087 247 SDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSGL 322 (849)
Q Consensus 247 ~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~~~ 322 (849)
+ ..|.|+.=+.... ...|... +.|. ......+.+++|.+++.+-+++.+|++ +.+...|+
T Consensus 204 ~-~Gg~~~~s~~~~~---~~~w~~~----------~~~~-~~~~~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGk 263 (302)
T PF14870_consen 204 A-RGGQIQFSDDPDD---GETWSEP----------IIPI-KTNGYGILDLAYRPPNEIWAVGGSGTL-LVSTDGGK 263 (302)
T ss_dssp E-TTTEEEEEE-TTE---EEEE-------------B-TT-SS--S-EEEEEESSSS-EEEEESTT-E-EEESSTTS
T ss_pred e-CCcEEEEccCCCC---ccccccc----------cCCc-ccCceeeEEEEecCCCCEEEEeCCccE-EEeCCCCc
Confidence 4 8888877662222 2234311 1111 011245899999999888778878877 55556665
No 350
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=94.39 E-value=0.091 Score=56.80 Aligned_cols=144 Identities=10% Similarity=0.114 Sum_probs=81.8
Q ss_pred EEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccceeccccc-ccccccEEE
Q 003087 26 AVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRFTNKH-LKVSLPIIG 104 (849)
Q Consensus 26 Asas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~l~~~~-~~~~~~V~~ 104 (849)
++|.+.+|-|-+.+++-++- |. ..+.|.++.|.-.+.++-.|..+|.|-++|+.-+..-...+.+ .-+.++|.+
T Consensus 229 s~G~sqqv~L~nvetg~~qs---f~--sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvts 303 (425)
T KOG2695|consen 229 SVGLSQQVLLTNVETGHQQS---FQ--SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTS 303 (425)
T ss_pred cccccceeEEEEeecccccc---cc--cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhh
Confidence 34456677777876543221 22 2467888999988999999999999999998522100000000 011234554
Q ss_pred EEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEE-----cCCCceEEEEe
Q 003087 105 LIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDY-----HPELSLLSVVS 179 (849)
Q Consensus 105 l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svaf-----sPdg~lLas~g 179 (849)
|..-. .... .+...+-+|+|++||..--++..- ..+..|| |+.-++ +|....++++|
T Consensus 304 lq~Lq---~s~q---~LmaS~M~gkikLyD~R~~K~~~~--------V~qYeGH----vN~~a~l~~~v~~eeg~I~s~G 365 (425)
T KOG2695|consen 304 LQILQ---FSQQ---KLMASDMTGKIKLYDLRATKCKKS--------VMQYEGH----VNLSAYLPAHVKEEEGSIFSVG 365 (425)
T ss_pred hhhhc---cccc---eEeeccCcCceeEeeehhhhcccc--------eeeeecc----cccccccccccccccceEEEcc
Confidence 43321 0000 122337899999999875444110 0122233 455454 44555666666
Q ss_pred cCCCCccccCCCCCCceeeEEEecCC
Q 003087 180 NTDTSSLTSSGNSGPCCISLWRRCHN 205 (849)
Q Consensus 180 ~d~t~~~~~~~~~G~~~I~lW~~~~~ 205 (849)
.| |..++|.+.++
T Consensus 366 dD-------------cytRiWsl~~g 378 (425)
T KOG2695|consen 366 DD-------------CYTRIWSLDSG 378 (425)
T ss_pred Ce-------------eEEEEEecccC
Confidence 55 78999999875
No 351
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=2.9 Score=46.55 Aligned_cols=75 Identities=15% Similarity=0.174 Sum_probs=54.4
Q ss_pred cccccceEEEEEcCCCC-eEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCC-EEEEEeCCCcEEEEec
Q 003087 7 PRKTKKQVSLFISPRGE-RVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHD-VLGIVDDTHTVYFFKA 83 (849)
Q Consensus 7 ~~~~~~v~slafSPdG~-~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~-~LAs~~~dgtIrlWd~ 83 (849)
|+.-..|..++|||..+ +|..++ ++.|+|.+..... ....+. ....+++.+|--|.. +|-.|..+|.|.|+|+
T Consensus 190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~--~vssy~--a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC--VVSSYI--AYNQIWSCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred cccchhhhhhccCccccceeeeeccCceEEEEecccce--eeehee--ccCCceeeeeccCCcceeEEeccCceEEEEEc
Confidence 55557789999999999 666777 7899999976421 111222 246788999987665 4556677899999998
Q ss_pred CC
Q 003087 84 NG 85 (849)
Q Consensus 84 ~g 85 (849)
..
T Consensus 266 R~ 267 (463)
T KOG1645|consen 266 RQ 267 (463)
T ss_pred cC
Confidence 63
No 352
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=94.12 E-value=6.9 Score=44.53 Aligned_cols=66 Identities=15% Similarity=0.162 Sum_probs=42.5
Q ss_pred CCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEec
Q 003087 240 QGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVL 319 (849)
Q Consensus 240 DG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~ 319 (849)
+|..|..++.+|.|...|..+++. +++... +. . .....++ + -++.+.+++.+|.|...|..
T Consensus 293 ~~~~vy~~~~~g~l~ald~~tG~~-~W~~~~-----------~~-~-~~~~sp~--v---~~g~l~v~~~~G~l~~ld~~ 353 (394)
T PRK11138 293 DGGRIYLVDQNDRVYALDTRGGVE-LWSQSD-----------LL-H-RLLTAPV--L---YNGYLVVGDSEGYLHWINRE 353 (394)
T ss_pred ECCEEEEEcCCCeEEEEECCCCcE-EEcccc-----------cC-C-CcccCCE--E---ECCEEEEEeCCCEEEEEECC
Confidence 566777788899999999987743 232210 00 0 0011121 1 37888899999999999998
Q ss_pred CCccc
Q 003087 320 SGLKV 324 (849)
Q Consensus 320 ~~~~l 324 (849)
+|+.+
T Consensus 354 tG~~~ 358 (394)
T PRK11138 354 DGRFV 358 (394)
T ss_pred CCCEE
Confidence 88743
No 353
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=94.10 E-value=4.1 Score=46.55 Aligned_cols=120 Identities=13% Similarity=0.094 Sum_probs=71.4
Q ss_pred ceEEEEEcCCCCeEEEEe-CCeEEEEecCC--CCC-c----c-------------eee---------------ee----e
Q 003087 12 KQVSLFISPRGERVAVAA-VNQVTILQKDD--DYQ-E----P-------------CGI---------------FN----C 51 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas-~~~i~iw~~~~--~~~-~----~-------------~~~---------------~~----~ 51 (849)
.|.++.|+++.--||+|- .|.|.||.+.. .++ . . -+. |. .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 488999999988888885 67777775432 122 0 0 000 11 0
Q ss_pred c-CCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccceec---ccc--cccccccEEEEEecC-----Cccccccccee
Q 003087 52 T-GLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRF---TNK--HLKVSLPIIGLIAQD-----ETDVQRSCLCS 120 (849)
Q Consensus 52 ~-~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~l---~~~--~~~~~~~V~~l~fs~-----~~~~~~s~~~~ 120 (849)
+ ..+.|++++.| |=.++|.|..+|++-|.|+.|..+..- ..+ ....+..|.++-|.- |...+ . .
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySS-i---~ 157 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSS-I---C 157 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEE-E---E
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccc-e---E
Confidence 1 26789999998 888999999999999999998653211 110 011234577777752 22111 1 3
Q ss_pred EEEEeCCCcEEEEEec
Q 003087 121 FTVFTSDGFLHQIEIS 136 (849)
Q Consensus 121 ~~~~s~Dg~v~lw~~~ 136 (849)
+.+++..|.+..|.+-
T Consensus 158 L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 158 LLVGTNSGNVLTFKIL 173 (395)
T ss_dssp EEEEETTSEEEEEEEE
T ss_pred EEEEeCCCCEEEEEEe
Confidence 6777889999999885
No 354
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.96 E-value=0.26 Score=57.91 Aligned_cols=128 Identities=16% Similarity=0.195 Sum_probs=90.4
Q ss_pred eeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccc
Q 003087 154 TLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHP 233 (849)
Q Consensus 154 ~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~ 233 (849)
.+.+.++..|.=-.++..++.|+.|++.+ . +.++...++.- .+. +..| ....+.
T Consensus 27 ~~~~~~~~~v~lTc~dst~~~l~~GsS~G-----------~--lyl~~R~~~~~--~~~---------~~~~--~~~~~~ 80 (726)
T KOG3621|consen 27 LQPGFFPARVKLTCVDATEEYLAMGSSAG-----------S--VYLYNRHTGEM--RKL---------KNEG--ATGITC 80 (726)
T ss_pred hccccCcceEEEEEeecCCceEEEecccc-----------e--EEEEecCchhh--hcc---------cccC--ccceEE
Confidence 34556666677778888899998887664 2 77777665420 110 1112 234566
Q ss_pred eEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCc
Q 003087 234 KVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSI 312 (849)
Q Consensus 234 ~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgt 312 (849)
..++|++..++|.|+..|.|.++.+...... .. .-+++.++.|...|..++|++|+. +-+|...|+
T Consensus 81 ~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~--~~-----------~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gk 147 (726)
T KOG3621|consen 81 VRSVSSVEYLVAAGTASGRVSVFQLNKELPR--DL-----------DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGK 147 (726)
T ss_pred EEEecchhHhhhhhcCCceEEeehhhccCCC--cc-----------eeeccccccCCceEEEEEecccccEEeecCCCce
Confidence 7899999999999999999999988764221 00 014455555778899999999985 779999999
Q ss_pred EEEEEecC
Q 003087 313 ITMIDVLS 320 (849)
Q Consensus 313 i~lwdl~~ 320 (849)
|..-.+.+
T Consensus 148 v~~~~L~s 155 (726)
T KOG3621|consen 148 VVLTELDS 155 (726)
T ss_pred EEEEEech
Confidence 99888877
No 355
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=93.57 E-value=9.3 Score=43.47 Aligned_cols=203 Identities=16% Similarity=0.211 Sum_probs=115.4
Q ss_pred EEEEEcCCCCeEEEEe--CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeC---CCcEEEEecCC-cc
Q 003087 14 VSLFISPRGERVAVAA--VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDD---THTVYFFKANG-EE 87 (849)
Q Consensus 14 ~slafSPdG~~LAsas--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~---dgtIrlWd~~g-~~ 87 (849)
..++++|+|..+.+.. ++.|.+.+.... ..++.... + ..-..++|+|||+.+-++.. +++|.+.|..+ +.
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~--~~~~~~~v-G-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATN--TVLGSIPV-G-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCccc--ceeeEeee-c-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE
Confidence 4689999999665553 578888884422 11221111 1 13367999999988887776 68898988864 44
Q ss_pred ceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEE
Q 003087 88 ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTD 167 (849)
Q Consensus 88 ~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sva 167 (849)
+..+..+. .+ .++++.|++....-. -..+++|.+.+........ . ...... .....-..++
T Consensus 153 ~~~~~vG~----~P-~~~a~~p~g~~vyv~------~~~~~~v~vi~~~~~~v~~--~----~~~~~~--~~~~~P~~i~ 213 (381)
T COG3391 153 TATIPVGN----TP-TGVAVDPDGNKVYVT------NSDDNTVSVIDTSGNSVVR--G----SVGSLV--GVGTGPAGIA 213 (381)
T ss_pred EEEEecCC----Cc-ceEEECCCCCeEEEE------ecCCCeEEEEeCCCcceec--c----cccccc--ccCCCCceEE
Confidence 43332221 23 678888866533211 1467888888865433221 0 000000 0112347789
Q ss_pred EcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEE
Q 003087 168 YHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATS 247 (849)
Q Consensus 168 fsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~ 247 (849)
++|||..+.+.-... +...+..-+...+. +.... ...+ -. .-..++++|+|+.+.++
T Consensus 214 v~~~g~~~yV~~~~~----------~~~~v~~id~~~~~----v~~~~------~~~~--~~-~~~~v~~~p~g~~~yv~ 270 (381)
T COG3391 214 VDPDGNRVYVANDGS----------GSNNVLKIDTATGN----VTATD------LPVG--SG-APRGVAVDPAGKAAYVA 270 (381)
T ss_pred ECCCCCEEEEEeccC----------CCceEEEEeCCCce----EEEec------cccc--cC-CCCceeECCCCCEEEEE
Confidence 999999876653321 00123333333321 11000 0001 01 34468999999999988
Q ss_pred eCC-CcEEEEecCCCc
Q 003087 248 DTN-GCLYIFEMDKDN 262 (849)
Q Consensus 248 s~D-gtv~LWd~~~~~ 262 (849)
... +++.+=|..+..
T Consensus 271 ~~~~~~V~vid~~~~~ 286 (381)
T COG3391 271 NSQGGTVSVIDGATDR 286 (381)
T ss_pred ecCCCeEEEEeCCCCc
Confidence 554 889888888763
No 356
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.56 E-value=3 Score=46.50 Aligned_cols=119 Identities=11% Similarity=0.109 Sum_probs=57.5
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEecCCcc---ceecccccccccccEEEEEecCCcccccccceeEEEEeC-------
Q 003087 57 SIYGAWSESHDVLGIVDDTHTVYFFKANGEE---ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTS------- 126 (849)
Q Consensus 57 v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~---~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~------- 126 (849)
-++++|.|||+++++ ...|+|++++.+|.. +..+..-...-..-..+++|.|+-... ..|++...
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n----~~lYv~~t~~~~~~~ 78 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASN----GYLYVYYTNADEDGG 78 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-----EEEEEEEEE-TSSS
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCC----CEEEEEEEcccCCCC
Confidence 368999999998875 559999999966654 222211111111346789998842111 12333222
Q ss_pred C--CcEEEEEecCCC-CcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCC
Q 003087 127 D--GFLHQIEISQDP-SASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTD 182 (849)
Q Consensus 127 D--g~v~lw~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~ 182 (849)
. ..|.-|..+.+. .....+..+......-.+. +....++|.|||.+.++.|...
T Consensus 79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~--H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGN--HNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSS--S-EEEEEE-TTSEEEEEEB-TT
T ss_pred CcceeeEEEeccCCccccccceEEEEEeCCCCCCC--CCCccccCCCCCcEEEEeCCCC
Confidence 1 123334444331 1000000000000000112 2467899999998888877654
No 357
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=93.18 E-value=6.6 Score=43.52 Aligned_cols=208 Identities=13% Similarity=0.205 Sum_probs=108.1
Q ss_pred eEEEEEcCCCCeEEEEe---CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC--Ccc
Q 003087 13 QVSLFISPRGERVAVAA---VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN--GEE 87 (849)
Q Consensus 13 v~slafSPdG~~LAsas---~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~--g~~ 87 (849)
.+..++|+||+++.+.. ...|.+-|.... +-.+.....| +.+.+=-..+-+.+-+.||++--..+. |++
T Consensus 97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~--kvv~ei~~PG----C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~ 170 (342)
T PF06433_consen 97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAK--KVVGEIDTPG----CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKE 170 (342)
T ss_dssp GGGEEE-TTSSEEEEEEESSSEEEEEEETTTT--EEEEEEEGTS----EEEEEEEETTEEEEEETTSCEEEEEETSTSSE
T ss_pred ccceEEccCCcEEEEEccCCCCeEEEEECCCC--ceeeeecCCC----EEEEEecCCCceEEEecCCceEEEEECCCCCE
Confidence 35679999999998874 468999997642 2222222111 222221112346677788888777664 665
Q ss_pred ceecccccccccccEEEEEecC--Cccccc----ccceeEEEEeCCCcEEEEEecCCCCccccccccc-------CCcce
Q 003087 88 ITRFTNKHLKVSLPIIGLIAQD--ETDVQR----SCLCSFTVFTSDGFLHQIEISQDPSASISSASAS-------SSGLT 154 (849)
Q Consensus 88 ~~~l~~~~~~~~~~V~~l~fs~--~~~~~~----s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~-------~~~~~ 154 (849)
..+. .. +|.+ +..... .....++-.+++|.|+--+++.+.. .... .++ ...|.
T Consensus 171 ~~~~-----------t~-~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~-~~~~-~~~~~t~~e~~~~Wr 236 (342)
T PF06433_consen 171 AQKS-----------TK-VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSA-KFGK-PWSLLTDAEKADGWR 236 (342)
T ss_dssp EEEE-----------EE-ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSE-EEEE-EEESS-HHHHHTTEE
T ss_pred eEee-----------cc-ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcc-cccC-cccccCccccccCcC
Confidence 3111 01 3332 111100 0112455569999999999876542 1111 000 01122
Q ss_pred eccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccce
Q 003087 155 LRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPK 234 (849)
Q Consensus 155 l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~ 234 (849)
+.+-.-++||+....|.+.-..+ +.|+....| -.+|-++... .+.+.... -...+.+
T Consensus 237 -----PGG~Q~~A~~~~~~rlyvLMh~g--~~gsHKdpg---teVWv~D~~t-~krv~Ri~------------l~~~~~S 293 (342)
T PF06433_consen 237 -----PGGWQLIAYHAASGRLYVLMHQG--GEGSHKDPG---TEVWVYDLKT-HKRVARIP------------LEHPIDS 293 (342)
T ss_dssp -----E-SSS-EEEETTTTEEEEEEEE----TT-TTS-E---EEEEEEETTT-TEEEEEEE------------EEEEESE
T ss_pred -----CcceeeeeeccccCeEEEEecCC--CCCCccCCc---eEEEEEECCC-CeEEEEEe------------CCCccce
Confidence 23456689998877776655433 233322223 2456554421 11221110 0136779
Q ss_pred EEEccCCC-EEEEEe-CCCcEEEEecCCCcc
Q 003087 235 VLISPQGK-FVATSD-TNGCLYIFEMDKDNF 263 (849)
Q Consensus 235 vafSPDG~-~LAs~s-~Dgtv~LWd~~~~~~ 263 (849)
|++|.|.+ +|.+++ .+|.|.+||..+++.
T Consensus 294 i~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 294 IAVSQDDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp EEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred EEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 99999998 665554 589999999998854
No 358
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.18 E-value=0.39 Score=55.95 Aligned_cols=78 Identities=18% Similarity=0.352 Sum_probs=55.4
Q ss_pred CceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCcccccc-ceEEEcc
Q 003087 161 QNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAH-PKVLISP 239 (849)
Q Consensus 161 ~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V-~~vafSP 239 (849)
..|.-+.|+|.=.++|.+-.++- |-+-|.+. +++++... |...| .+++|-|
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~ge-------------lli~R~n~----qRlwtip~-----------p~~~v~~sL~W~~ 72 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGE-------------LLIHRLNW----QRLWTIPI-----------PGENVTASLCWRP 72 (665)
T ss_pred cceEEEEEcCccchhheeccCCc-------------EEEEEecc----ceeEeccC-----------CCCccceeeeecC
Confidence 45889999999999998877752 33444331 23333211 11233 4999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCcccccc
Q 003087 240 QGKFVATSDTNGCLYIFEMDKDNFSLSK 267 (849)
Q Consensus 240 DG~~LAs~s~Dgtv~LWd~~~~~~~l~~ 267 (849)
||++||.|=.||+|+|-|+.++.. +..
T Consensus 73 DGkllaVg~kdG~I~L~Dve~~~~-l~~ 99 (665)
T KOG4640|consen 73 DGKLLAVGFKDGTIRLHDVEKGGR-LVS 99 (665)
T ss_pred CCCEEEEEecCCeEEEEEccCCCc-eec
Confidence 999999999999999999998754 444
No 359
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=93.17 E-value=19 Score=41.00 Aligned_cols=242 Identities=14% Similarity=0.136 Sum_probs=130.4
Q ss_pred ceEEEEEcCCCCeEEEEe--CCeEEEEecCCCCCcceeeeee--c-CCCCEEEEEECCCCC-EEEEEeCCCcEEEEecCC
Q 003087 12 KQVSLFISPRGERVAVAA--VNQVTILQKDDDYQEPCGIFNC--T-GLGASIYGAWSESHD-VLGIVDDTHTVYFFKANG 85 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas--~~~i~iw~~~~~~~~~~~~~~~--~-~~~~v~~vafSPDG~-~LAs~~~dgtIrlWd~~g 85 (849)
....++..|+|..+.++. .+.+..-+.. ....+. . +...-..++.+|+|+ ..+....+++|.+.|...
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~------~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~ 105 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT------SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTAT 105 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc------cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcc
Confidence 456788999997665553 3434333321 111111 1 111225789999998 666666779999999654
Q ss_pred cc-ceecccccccccccEEEEEecCCcccccccceeEEEEe---CCCcEEEEEecCCCCcccccccccCCcceeccccCC
Q 003087 86 EE-ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFT---SDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQ 161 (849)
Q Consensus 86 ~~-~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s---~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (849)
.. +..+.... .-.+++|++++.. +++.. .++++...|-.++..... ...|..+
T Consensus 106 ~~~~~~~~vG~-----~P~~~~~~~~~~~-------vYV~n~~~~~~~vsvid~~t~~~~~~----------~~vG~~P- 162 (381)
T COG3391 106 NTVLGSIPVGL-----GPVGLAVDPDGKY-------VYVANAGNGNNTVSVIDAATNKVTAT----------IPVGNTP- 162 (381)
T ss_pred cceeeEeeecc-----CCceEEECCCCCE-------EEEEecccCCceEEEEeCCCCeEEEE----------EecCCCc-
Confidence 33 22222211 2236777765432 33333 367777777655443221 1122222
Q ss_pred ceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCC
Q 003087 162 NVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQG 241 (849)
Q Consensus 162 ~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG 241 (849)
..++++|+|..+.++-.+. + .|.+-+..+.. +...+-.+.+. -...-..++++|||
T Consensus 163 --~~~a~~p~g~~vyv~~~~~----------~--~v~vi~~~~~~----v~~~~~~~~~~------~~~~P~~i~v~~~g 218 (381)
T COG3391 163 --TGVAVDPDGNKVYVTNSDD----------N--TVSVIDTSGNS----VVRGSVGSLVG------VGTGPAGIAVDPDG 218 (381)
T ss_pred --ceEEECCCCCeEEEEecCC----------C--eEEEEeCCCcc----eeccccccccc------cCCCCceEEECCCC
Confidence 7899999999877765332 1 25555533321 10000000000 01123469999999
Q ss_pred CEEEEEeCC---CcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEE-EE-EeCCcEEEE
Q 003087 242 KFVATSDTN---GCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILI-LA-RKSSIITMI 316 (849)
Q Consensus 242 ~~LAs~s~D---gtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la-~a-~~dgti~lw 316 (849)
+.+...... +++..-|..++.. ..... . .+.. ....++..|+|..+ ++ +..+++.+.
T Consensus 219 ~~~yV~~~~~~~~~v~~id~~~~~v--~~~~~------------~---~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vi 280 (381)
T COG3391 219 NRVYVANDGSGSNNVLKIDTATGNV--TATDL------------P---VGSG-APRGVAVDPAGKAAYVANSQGGTVSVI 280 (381)
T ss_pred CEEEEEeccCCCceEEEEeCCCceE--EEecc------------c---cccC-CCCceeECCCCCEEEEEecCCCeEEEE
Confidence 976665544 5888888876532 11110 0 0111 34567888988644 44 345788898
Q ss_pred EecCCccc
Q 003087 317 DVLSGLKV 324 (849)
Q Consensus 317 dl~~~~~l 324 (849)
|..+.+..
T Consensus 281 d~~~~~v~ 288 (381)
T COG3391 281 DGATDRVV 288 (381)
T ss_pred eCCCCcee
Confidence 88876643
No 360
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=93.15 E-value=8 Score=44.04 Aligned_cols=59 Identities=12% Similarity=0.253 Sum_probs=37.5
Q ss_pred CCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEe
Q 003087 241 GKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDV 318 (849)
Q Consensus 241 G~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl 318 (849)
+..|..++.||.|...|..+++. ++++.... . +-...++ -.+++|.+++.||.|..++.
T Consensus 335 ~g~l~v~~~~G~l~~ld~~tG~~-~~~~~~~~------------~-~~~s~P~-----~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 335 NGYLVVGDSEGYLHWINREDGRF-VAQQKVDS------------S-GFLSEPV-----VADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEEEEEeCCCEEEEEECCCCCE-EEEEEcCC------------C-cceeCCE-----EECCEEEEEeCCceEEEEeC
Confidence 45566789999999999988754 33332110 0 0000111 14788999999999887764
No 361
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=93.15 E-value=3.5 Score=38.17 Aligned_cols=84 Identities=11% Similarity=0.105 Sum_probs=55.2
Q ss_pred eEEEEEcC-CC---CeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCcc
Q 003087 13 QVSLFISP-RG---ERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEE 87 (849)
Q Consensus 13 v~slafSP-dG---~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~ 87 (849)
|.+++++. || +-|.+|| |..|+|++.+. .+..++ ..+.|++++=.+. ..+|.|-.+|||.+++-.. .
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e----~~~Ei~--e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~-R 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE----IVAEIT--ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ-R 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc----EEEEEe--cccceEEEEEcCC-CEEEEEecCCEEEEEeCcc-e
Confidence 66777665 44 3677777 56899998542 233333 3567888888776 5589999999999998643 3
Q ss_pred ceecccccccccccEEEEEecC
Q 003087 88 ITRFTNKHLKVSLPIIGLIAQD 109 (849)
Q Consensus 88 ~~~l~~~~~~~~~~V~~l~fs~ 109 (849)
+.++...+ .+.++++-|
T Consensus 74 lWRiKSK~-----~~~~~~~~D 90 (111)
T PF14783_consen 74 LWRIKSKN-----QVTSMAFYD 90 (111)
T ss_pred eeeeccCC-----CeEEEEEEc
Confidence 45554332 356666644
No 362
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.04 E-value=18 Score=40.35 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=39.4
Q ss_pred cceEEEEEcCCCCeEEEEeCCeEEEEecCCCCC-cceeeee---ecCCCCEEEEEECCC----CCEEEEEe
Q 003087 11 KKQVSLFISPRGERVAVAAVNQVTILQKDDDYQ-EPCGIFN---CTGLGASIYGAWSES----HDVLGIVD 73 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~-~~~~~~~---~~~~~~v~~vafSPD----G~~LAs~~ 73 (849)
+..++++|.|||+++++-..+.|.+.+. ++.. .+..... ..+......+||.|+ +.+.++.+
T Consensus 2 ~~P~~~a~~pdG~l~v~e~~G~i~~~~~-~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t 71 (331)
T PF07995_consen 2 NNPRSMAFLPDGRLLVAERSGRIWVVDK-DGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYT 71 (331)
T ss_dssp SSEEEEEEETTSCEEEEETTTEEEEEET-TTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEE
T ss_pred CCceEEEEeCCCcEEEEeCCceEEEEeC-CCcCcceecccccccccccCCcccceeccccCCCCEEEEEEE
Confidence 4579999999999998767788888873 2221 1111111 123556789999995 66666555
No 363
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.73 E-value=2.5 Score=47.81 Aligned_cols=144 Identities=15% Similarity=0.155 Sum_probs=81.5
Q ss_pred EEEEEcCCCC-eEEEEeCCeEEEEecCC-CCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccceec
Q 003087 14 VSLFISPRGE-RVAVAAVNQVTILQKDD-DYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRF 91 (849)
Q Consensus 14 ~slafSPdG~-~LAsas~~~i~iw~~~~-~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~l 91 (849)
+.|.|.--.+ ++|+-|++ ++=|-..+ +...|+.-+ ..+.+.|.++.||||.+.||+-..+.+|.+++..|.+-...
T Consensus 26 ngvFfDDaNkqlfavrSgg-atgvvvkgpndDVpiSfd-m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~ 103 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGG-ATGVVVKGPNDDVPISFD-MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE 103 (657)
T ss_pred cceeeccCcceEEEEecCC-eeEEEEeCCCCCCCceee-ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH
Confidence 4577765444 44655654 33333221 112333322 22356999999999999999999999999999965431111
Q ss_pred -ccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcC
Q 003087 92 -TNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHP 170 (849)
Q Consensus 92 -~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsP 170 (849)
...+...+-.|.+..|++. +.+++++..| +-++.+......- .+-..++.+|+-.+|.|
T Consensus 104 ~~~~ck~k~~~IlGF~W~~s--------~e~A~i~~~G-~e~y~v~pekrsl-----------RlVks~~~nvnWy~yc~ 163 (657)
T KOG2377|consen 104 YTQECKTKNANILGFCWTSS--------TEIAFITDQG-IEFYQVLPEKRSL-----------RLVKSHNLNVNWYMYCP 163 (657)
T ss_pred HHHHhccCcceeEEEEEecC--------eeEEEEecCC-eEEEEEchhhhhh-----------hhhhhcccCccEEEEcc
Confidence 1111122334777775442 3466666555 5555554322110 01112344689999999
Q ss_pred CCceEEEEe
Q 003087 171 ELSLLSVVS 179 (849)
Q Consensus 171 dg~lLas~g 179 (849)
+-+++.-++
T Consensus 164 et~v~LL~t 172 (657)
T KOG2377|consen 164 ETAVILLST 172 (657)
T ss_pred ccceEeeec
Confidence 998654443
No 364
>PRK13684 Ycf48-like protein; Provisional
Probab=92.45 E-value=4.8 Score=44.94 Aligned_cols=151 Identities=10% Similarity=0.001 Sum_probs=79.8
Q ss_pred ccceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccce
Q 003087 10 TKKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEIT 89 (849)
Q Consensus 10 ~~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~ 89 (849)
.+.+.+++++|||.++|++..+.+.. ..+++ +..-..........+.++++.|+|+.+++|. .|.+++=..++..-.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~-s~~~g-g~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYS-TWEPG-QTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEE-EcCCC-CCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCCCcc
Confidence 35688999999999998887775432 11121 1111111111245778999999999887764 577754334432212
Q ss_pred e-cccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEE
Q 003087 90 R-FTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDY 168 (849)
Q Consensus 90 ~-l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svaf 168 (849)
+ +..+...-+..+.+++|.+++ .+.+++.+|.+.. ....|.. ... .......+...+.+.|
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~--------~~~~~G~~G~v~~-S~d~G~t--W~~-------~~~~~~~~~~~~~~~~ 310 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPG--------EIWAGGGNGTLLV-SKDGGKT--WEK-------DPVGEEVPSNFYKIVF 310 (334)
T ss_pred ccccCCccccccceeeEEEcCCC--------CEEEEcCCCeEEE-eCCCCCC--CeE-------CCcCCCCCcceEEEEE
Confidence 2 111101111346778886633 2444567776532 2121221 100 0000122335788999
Q ss_pred cCCCceEEEEecCC
Q 003087 169 HPELSLLSVVSNTD 182 (849)
Q Consensus 169 sPdg~lLas~g~d~ 182 (849)
..+++.+|+ |..+
T Consensus 311 ~~~~~~~~~-G~~G 323 (334)
T PRK13684 311 LDPEKGFVL-GQRG 323 (334)
T ss_pred eCCCceEEE-CCCc
Confidence 888888765 4554
No 365
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.33 E-value=2.6 Score=47.63 Aligned_cols=74 Identities=12% Similarity=0.092 Sum_probs=43.5
Q ss_pred ccceEEEEEcCCCCeEEEEe-------------CCeEEEEecCCCCCcceeeee-ecCCCCEEEEEECCCCCEEEEEeCC
Q 003087 10 TKKQVSLFISPRGERVAVAA-------------VNQVTILQKDDDYQEPCGIFN-CTGLGASIYGAWSESHDVLGIVDDT 75 (849)
Q Consensus 10 ~~~v~slafSPdG~~LAsas-------------~~~i~iw~~~~~~~~~~~~~~-~~~~~~v~~vafSPDG~~LAs~~~d 75 (849)
+.....++|.|+|++.++-. .+.|.++...++.+....... ..+....+.++|.++| ++++ +.+
T Consensus 13 ~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~ 90 (367)
T TIGR02604 13 LRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPP 90 (367)
T ss_pred cCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCC
Confidence 56788999999999887632 237777754333233221111 1223345789999999 5554 444
Q ss_pred CcEEEEecCC
Q 003087 76 HTVYFFKANG 85 (849)
Q Consensus 76 gtIrlWd~~g 85 (849)
...++.|.+|
T Consensus 91 ~i~~~~d~~g 100 (367)
T TIGR02604 91 DILFLRDKDG 100 (367)
T ss_pred eEEEEeCCCC
Confidence 4334446654
No 366
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.26 E-value=6.4 Score=45.04 Aligned_cols=140 Identities=12% Similarity=0.142 Sum_probs=78.3
Q ss_pred eEEEEEcCCCCeEEEEeCCeEE-EEecCCCCCcce-eeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cc---
Q 003087 13 QVSLFISPRGERVAVAAVNQVT-ILQKDDDYQEPC-GIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GE--- 86 (849)
Q Consensus 13 v~slafSPdG~~LAsas~~~i~-iw~~~~~~~~~~-~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~--- 86 (849)
...+..++||+++|++..+.+- -|+ ++ ... ..........+.+++|++||.+++++ ..|.+ +|... |.
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d--~G--~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~ 314 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWE--PG--QPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEE 314 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecC--CC--CcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCccc
Confidence 4557889999999999876532 232 11 110 01111124567899999999988766 45766 44443 43
Q ss_pred --cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceec---cccCC
Q 003087 87 --EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLR---RQFPQ 161 (849)
Q Consensus 87 --~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~---~~~~~ 161 (849)
....+.... ....+.++.|.++.. +.+.+..|.+.... ..|+. |+.. ...+.
T Consensus 315 ~~~f~~~~~~~--~~~~l~~v~~~~d~~--------~~a~G~~G~v~~s~-D~G~t------------W~~~~~~~~~~~ 371 (398)
T PLN00033 315 DFDFEEADIKS--RGFGILDVGYRSKKE--------AWAAGGSGILLRST-DGGKS------------WKRDKGADNIAA 371 (398)
T ss_pred ccceeecccCC--CCcceEEEEEcCCCc--------EEEEECCCcEEEeC-CCCcc------------eeEccccCCCCc
Confidence 222221110 113477888866443 34457888775543 11211 1111 12234
Q ss_pred ceEEEEEcCCCceEEEEecCC
Q 003087 162 NVICTDYHPELSLLSVVSNTD 182 (849)
Q Consensus 162 ~V~svafsPdg~lLas~g~d~ 182 (849)
..+.|.|.++++..++ |.++
T Consensus 372 ~ly~v~f~~~~~g~~~-G~~G 391 (398)
T PLN00033 372 NLYSVKFFDDKKGFVL-GNDG 391 (398)
T ss_pred ceeEEEEcCCCceEEE-eCCc
Confidence 5889999998888765 4554
No 367
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.15 E-value=2.7 Score=46.13 Aligned_cols=148 Identities=9% Similarity=0.059 Sum_probs=67.9
Q ss_pred cceEEEEEcCCCCeEEEEeCCeE-EEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccce
Q 003087 11 KKQVSLFISPRGERVAVAAVNQV-TILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEIT 89 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~~~i-~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~ 89 (849)
+.+.++..++||++||+++.+.+ .-|+... ..-..+.......|.++.|+|||.+...+ ..|.|++=+..+ ...
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~---~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~-~~~ 219 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQ---TTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD-DGE 219 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT----SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT-EEE
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCC---ccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCC-Ccc
Confidence 67888999999999999986654 4555321 11111111125678999999999987766 778888766211 111
Q ss_pred ecccccc---cccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEE
Q 003087 90 RFTNKHL---KVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT 166 (849)
Q Consensus 90 ~l~~~~~---~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv 166 (849)
.+..+.. ....-+..++|.++.. +.+++..|++- .-..++. .... + . . ....+...+.|
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~--------~wa~gg~G~l~--~S~DgGk-tW~~-~---~--~-~~~~~~n~~~i 281 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNE--------IWAVGGSGTLL--VSTDGGK-TWQK-D---R--V-GENVPSNLYRI 281 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS---------EEEEESTT-EE--EESSTTS-S-EE-----G--G-GTTSSS---EE
T ss_pred ccccccCCcccCceeeEEEEecCCCC--------EEEEeCCccEE--EeCCCCc-cceE-C---c--c-ccCCCCceEEE
Confidence 2211111 1113478889876433 22335666442 1111111 1100 0 0 0 00223457888
Q ss_pred EEcCCCceEEEEecCC
Q 003087 167 DYHPELSLLSVVSNTD 182 (849)
Q Consensus 167 afsPdg~lLas~g~d~ 182 (849)
.|.++.+-+|. |.++
T Consensus 282 ~f~~~~~gf~l-G~~G 296 (302)
T PF14870_consen 282 VFVNPDKGFVL-GQDG 296 (302)
T ss_dssp EEEETTEEEEE--STT
T ss_pred EEcCCCceEEE-CCCc
Confidence 89877666654 5665
No 368
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=91.97 E-value=6.9 Score=40.50 Aligned_cols=198 Identities=14% Similarity=0.119 Sum_probs=94.0
Q ss_pred cCCCCeEEEE-eCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEec-CCccceecccccc
Q 003087 19 SPRGERVAVA-AVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKA-NGEEITRFTNKHL 96 (849)
Q Consensus 19 SPdG~~LAsa-s~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~-~g~~~~~l~~~~~ 96 (849)
.+++++|.++ .++.+..|+..++ +..-.....+ .+.... ..++..+.++..++.|+.+|. +|+.+.+......
T Consensus 33 ~~~~~~v~~~~~~~~l~~~d~~tG--~~~W~~~~~~--~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~ 107 (238)
T PF13360_consen 33 VPDGGRVYVASGDGNLYALDAKTG--KVLWRFDLPG--PISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS 107 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTS--EEEEEEECSS--CGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SS
T ss_pred EEeCCEEEEEcCCCEEEEEECCCC--CEEEEeeccc--ccccee-eecccccccccceeeeEecccCCcceeeeeccccc
Confidence 3355555555 4678888887543 3333333211 110001 224566666668889999995 5887666322110
Q ss_pred cccc--cEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCce
Q 003087 97 KVSL--PIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSL 174 (849)
Q Consensus 97 ~~~~--~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~l 174 (849)
.... .....++. .+.+++...+|.|..+|+.+|.....+....+.....+. .. ..+.+-....+| .
T Consensus 108 ~~~~~~~~~~~~~~---------~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~-~ 175 (238)
T PF13360_consen 108 PPAGVRSSSSPAVD---------GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPIS-SF-SDINGSPVISDG-R 175 (238)
T ss_dssp CTCSTB--SEEEEE---------TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EE-EE-TTEEEEEECCTT-E
T ss_pred cccccccccCceEe---------cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCccee-ee-cccccceEEECC-E
Confidence 0000 00111111 123555566888999998887763322200000000000 00 112233333355 4
Q ss_pred EEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEE
Q 003087 175 LSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLY 254 (849)
Q Consensus 175 Las~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~ 254 (849)
+.+++.++. .+.+ +..++. .++. ... ..+.. ...++|..|+.++.+|.|.
T Consensus 176 v~~~~~~g~------------~~~~-d~~tg~---~~w~--------~~~-----~~~~~-~~~~~~~~l~~~~~~~~l~ 225 (238)
T PF13360_consen 176 VYVSSGDGR------------VVAV-DLATGE---KLWS--------KPI-----SGIYS-LPSVDGGTLYVTSSDGRLY 225 (238)
T ss_dssp EEEECCTSS------------EEEE-ETTTTE---EEEE--------ECS-----S-ECE-CEECCCTEEEEEETTTEEE
T ss_pred EEEEcCCCe------------EEEE-ECCCCC---EEEE--------ecC-----CCccC-CceeeCCEEEEEeCCCEEE
Confidence 444444431 1333 443321 1111 000 01112 1457888999888999999
Q ss_pred EEecCCCcc
Q 003087 255 IFEMDKDNF 263 (849)
Q Consensus 255 LWd~~~~~~ 263 (849)
.||+.+++.
T Consensus 226 ~~d~~tG~~ 234 (238)
T PF13360_consen 226 ALDLKTGKV 234 (238)
T ss_dssp EEETTTTEE
T ss_pred EEECCCCCE
Confidence 999999854
No 369
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=91.72 E-value=5.7 Score=43.82 Aligned_cols=140 Identities=14% Similarity=0.095 Sum_probs=80.1
Q ss_pred CcEEEEEecCCCC-cccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCc
Q 003087 128 GFLHQIEISQDPS-ASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNL 206 (849)
Q Consensus 128 g~v~lw~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~ 206 (849)
|.|.++++...+. ...++. -.....+.+|++++-- +|+++++. +. .|.+|++....
T Consensus 62 Gri~v~~i~~~~~~~~~l~~-------i~~~~~~g~V~ai~~~-~~~lv~~~-g~--------------~l~v~~l~~~~ 118 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKL-------IHSTEVKGPVTAICSF-NGRLVVAV-GN--------------KLYVYDLDNSK 118 (321)
T ss_dssp EEEEEEEECSS-----EEEE-------EEEEEESS-EEEEEEE-TTEEEEEE-TT--------------EEEEEEEETTS
T ss_pred cEEEEEEEEcccccceEEEE-------EEEEeecCcceEhhhh-CCEEEEee-cC--------------EEEEEEccCcc
Confidence 8899999987411 001110 0001234568888877 66655443 33 28889887753
Q ss_pred CcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCC
Q 003087 207 ELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGR 286 (849)
Q Consensus 207 ~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~ 286 (849)
.+.+.. . +...+..++.+..+.+++.|+.-+.|.++........+..... +
T Consensus 119 ~l~~~~------~--------~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~--------------d- 169 (321)
T PF03178_consen 119 TLLKKA------F--------YDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVAR--------------D- 169 (321)
T ss_dssp SEEEEE------E--------E-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEE--------------E-
T ss_pred cchhhh------e--------ecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEe--------------c-
Confidence 111111 0 2234456666677889999999999998755532111222210 0
Q ss_pred CCCCCCcEEEEEecCC-EEEEEEeCCcEEEEEecC
Q 003087 287 TKPISDITDFAWWSDN-ILILARKSSIITMIDVLS 320 (849)
Q Consensus 287 ~~~~~~v~~vaws~D~-~la~a~~dgti~lwdl~~ 320 (849)
....++.++.|-+|+ .++++..+|++.++..+.
T Consensus 170 -~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 170 -YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp -SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred -CCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 012357888888555 788899999999999874
No 370
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.26 E-value=0.48 Score=35.94 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=26.5
Q ss_pred CCEEEEEECCCC---CEEEEEeCCCcEEEEecC
Q 003087 55 GASIYGAWSESH---DVLGIVDDTHTVYFFKAN 84 (849)
Q Consensus 55 ~~v~~vafSPDG---~~LAs~~~dgtIrlWd~~ 84 (849)
+.|+++.|||++ .+||-+..-|.|+|+|+.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 368999999854 599999999999999986
No 371
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.87 E-value=0.49 Score=52.32 Aligned_cols=76 Identities=11% Similarity=0.185 Sum_probs=60.5
Q ss_pred cccccceEEEccCCC-EEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE--E
Q 003087 228 VQLAHPKVLISPQGK-FVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI--L 304 (849)
Q Consensus 228 h~~~V~~vafSPDG~-~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~--l 304 (849)
|...|+.++|||... +|..++.+.+|+|.|+.+..+ ...+. ....+++.+|--|.. |
T Consensus 192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~-vssy~-------------------a~~~~wSC~wDlde~h~I 251 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV-VSSYI-------------------AYNQIWSCCWDLDERHVI 251 (463)
T ss_pred cchhhhhhccCccccceeeeeccCceEEEEeccccee-eehee-------------------ccCCceeeeeccCCccee
Confidence 667899999999999 888999999999999998643 23332 125689999976754 5
Q ss_pred EEEEeCCcEEEEEecCCcc
Q 003087 305 ILARKSSIITMIDVLSGLK 323 (849)
Q Consensus 305 a~a~~dgti~lwdl~~~~~ 323 (849)
-.|-.+|.|-|+|+...+.
T Consensus 252 YaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 252 YAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred EEeccCceEEEEEccCCCc
Confidence 6788999999999986653
No 372
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=90.85 E-value=1.2 Score=44.75 Aligned_cols=73 Identities=23% Similarity=0.286 Sum_probs=48.2
Q ss_pred eEEEEEcCCCCeEEEEeCCeEEEEecCCCC------------------Ccceeeeee-------------c-C------C
Q 003087 13 QVSLFISPRGERVAVAAVNQVTILQKDDDY------------------QEPCGIFNC-------------T-G------L 54 (849)
Q Consensus 13 v~slafSPdG~~LAsas~~~i~iw~~~~~~------------------~~~~~~~~~-------------~-~------~ 54 (849)
..+|+||.|| .||++.++.|.|.+..... ..+...+.. . . .
T Consensus 7 ~~~l~WS~Dg-~laV~t~~~v~IL~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~ 85 (173)
T PF12657_consen 7 PNALAWSEDG-QLAVATGESVHILDPQTPNSLSKSFIPRPLTLPPSSIQWPITSIRRNLFTSSEWPTESPRSMDDEEISS 85 (173)
T ss_pred CcCeeECCCC-CEEEEcCCeEEEEeccCCcccccccccCCcccccccCCCccceEecCccccccCceecccccccccccc
Confidence 4689999999 5778888889888211100 000111100 0 0 1
Q ss_pred CCEEEEEECCCC------CEEEEEeCCCcEEEEecCCc
Q 003087 55 GASIYGAWSESH------DVLGIVDDTHTVYFFKANGE 86 (849)
Q Consensus 55 ~~v~~vafSPDG------~~LAs~~~dgtIrlWd~~g~ 86 (849)
+.|.+++|||-| =+||+-..+|.|.||...+.
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 378999999955 47999999999999987653
No 373
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=89.86 E-value=0.66 Score=36.05 Aligned_cols=31 Identities=10% Similarity=0.212 Sum_probs=28.3
Q ss_pred cccceEEEccCCCEEEEEeCCCcEEEEecCC
Q 003087 230 LAHPKVLISPQGKFVATSDTNGCLYIFEMDK 260 (849)
Q Consensus 230 ~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~ 260 (849)
..|..++|||...+||.+..+|.|.|+.+..
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 4688999999999999999999999999953
No 374
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=89.19 E-value=3 Score=50.80 Aligned_cols=147 Identities=9% Similarity=0.089 Sum_probs=85.1
Q ss_pred CCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCC---------CcEEEEecCCccce
Q 003087 20 PRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDT---------HTVYFFKANGEEIT 89 (849)
Q Consensus 20 PdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~d---------gtIrlWd~~g~~~~ 89 (849)
-|++.+-.|. .|+|.+.|... -+++.++.. |++.+ .+|.-.|.+|++++.. .=|+|||+.- +.
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s--~~~iht~~a-Hs~si--SDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRm--mr 257 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNS--FETIHTFDA-HSGSI--SDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRM--MR 257 (1118)
T ss_pred ecCcEEEeecccceEEeecCCc--Cceeeeeec-cccce--eeeeccCCeEEEeecccccccccccchhhhhhhhh--hh
Confidence 4778887775 47898888653 123333332 24444 4677789999998864 4478888742 12
Q ss_pred ecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEc
Q 003087 90 RFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYH 169 (849)
Q Consensus 90 ~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafs 169 (849)
.+.+-+..... .=+.|.|. ....+++++..|.+++-|..+-.....-. ....-....+.++++|
T Consensus 258 al~PI~~~~~P--~flrf~Ps------l~t~~~V~S~sGq~q~vd~~~lsNP~~~~--------~~v~p~~s~i~~fDiS 321 (1118)
T KOG1275|consen 258 ALSPIQFPYGP--QFLRFHPS------LTTRLAVTSQSGQFQFVDTATLSNPPAGV--------KMVNPNGSGISAFDIS 321 (1118)
T ss_pred ccCCcccccCc--hhhhhccc------ccceEEEEecccceeeccccccCCCccce--------eEEccCCCcceeEEec
Confidence 22221110000 01334442 22357888999999999843321111100 0000112359999999
Q ss_pred CCCceEEEEecCCCCccccCCCCCCceeeEEEe
Q 003087 170 PELSLLSVVSNTDTSSLTSSGNSGPCCISLWRR 202 (849)
Q Consensus 170 Pdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~ 202 (849)
+.|..+|.|-.++ .|.+|.-
T Consensus 322 sn~~alafgd~~g-------------~v~~wa~ 341 (1118)
T KOG1275|consen 322 SNGDALAFGDHEG-------------HVNLWAD 341 (1118)
T ss_pred CCCceEEEecccC-------------cEeeecC
Confidence 9999999887665 3889983
No 375
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.93 E-value=37 Score=36.85 Aligned_cols=160 Identities=15% Similarity=0.141 Sum_probs=91.2
Q ss_pred cceEEEEEcCCCCeEEEEeCC-eEEEE-ecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Ccc
Q 003087 11 KKQVSLFISPRGERVAVAAVN-QVTIL-QKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GEE 87 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~~-~i~iw-~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~~ 87 (849)
..|.+|.|+||.++|-+..++ .-.++ +.. |..+.+....+-..-..+.+.-+|++.++-..++++.++.++ +..
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~---GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKE---GDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecC---CceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 448899999999999887764 33333 333 345555554343344678999999999999999999999886 322
Q ss_pred ceeccc-----c-cccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCC
Q 003087 88 ITRFTN-----K-HLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQ 161 (849)
Q Consensus 88 ~~~l~~-----~-~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (849)
...+.. + ..+.+.-.-++++.|... .|+++-...-+.++.+..+...-..... ....-...-+-.
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~-------~l~~aKEr~P~~I~~~~~~~~~l~~~~~--~~~~~~~~~f~~ 233 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDH-------RLFVAKERNPIGIFEVTQSPSSLSVHAS--LDPTADRDLFVL 233 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCc-------eEEEEEccCCcEEEEEecCCcccccccc--cCcccccceEee
Confidence 121111 0 011123345677655322 3556667777788877644421000000 000000001123
Q ss_pred ceEEEEEcCCCceEEEEecCC
Q 003087 162 NVICTDYHPELSLLSVVSNTD 182 (849)
Q Consensus 162 ~V~svafsPdg~lLas~g~d~ 182 (849)
.|+++.|+|.-..|.+-|...
T Consensus 234 DvSgl~~~~~~~~LLVLS~ES 254 (316)
T COG3204 234 DVSGLEFNAITNSLLVLSDES 254 (316)
T ss_pred ccccceecCCCCcEEEEecCC
Confidence 589999998655555555543
No 376
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=88.70 E-value=9.8 Score=41.96 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=46.1
Q ss_pred CceEEEEEcCCCceEEEEec---CCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEE
Q 003087 161 QNVICTDYHPELSLLSVVSN---TDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLI 237 (849)
Q Consensus 161 ~~V~svafsPdg~lLas~g~---d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vaf 237 (849)
+.-|.+...|+|++-+.... .+. ..-...| ++|++++......+.. + |-..-+.|+|
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~---~~~~~~G----~lyr~~p~g~~~~l~~----~---------~~~~~NGla~ 170 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGK---SEERPTG----SLYRVDPDGGVVRLLD----D---------DLTIPNGLAF 170 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCc---cccCCcc----eEEEEcCCCCEEEeec----C---------cEEecCceEE
Confidence 34688899999998754333 110 0001222 6888885211111211 1 1122346999
Q ss_pred ccCCCEEEEEeCC-CcEEEEecC
Q 003087 238 SPQGKFVATSDTN-GCLYIFEMD 259 (849)
Q Consensus 238 SPDG~~LAs~s~D-gtv~LWd~~ 259 (849)
||||+.|..+++. +.|.-++++
T Consensus 171 SpDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 171 SPDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred CCCCCEEEEEeCCCCeEEEEecC
Confidence 9999998888775 777777666
No 377
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=88.42 E-value=21 Score=44.26 Aligned_cols=70 Identities=16% Similarity=0.177 Sum_probs=50.7
Q ss_pred cccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEe
Q 003087 230 LAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARK 309 (849)
Q Consensus 230 ~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~ 309 (849)
..-.+++=+.+|. ||.||.+|.|||+|--+.+ .-..++ +...+|..|.-+.||+-++|.|
T Consensus 578 ~~Fs~~aTt~~G~-iavgs~~G~IRLyd~~g~~-AKT~lp------------------~lG~pI~~iDvt~DGkwilaTc 637 (794)
T PF08553_consen 578 NNFSCFATTEDGY-IAVGSNKGDIRLYDRLGKR-AKTALP------------------GLGDPIIGIDVTADGKWILATC 637 (794)
T ss_pred CCceEEEecCCce-EEEEeCCCcEEeecccchh-hhhcCC------------------CCCCCeeEEEecCCCcEEEEee
Confidence 3455777777775 6779999999999964421 111111 1235688888889999999999
Q ss_pred CCcEEEEEec
Q 003087 310 SSIITMIDVL 319 (849)
Q Consensus 310 dgti~lwdl~ 319 (849)
+..|.|++..
T Consensus 638 ~tyLlLi~t~ 647 (794)
T PF08553_consen 638 KTYLLLIDTL 647 (794)
T ss_pred cceEEEEEEe
Confidence 9999999974
No 378
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=88.21 E-value=1 Score=46.70 Aligned_cols=108 Identities=17% Similarity=0.185 Sum_probs=56.3
Q ss_pred CCEEEEEeCCCcEEEEecC--CccceecccccccccccEEEEEecC--CcccccccceeEEEEeCCCcEEEEEecCCCCc
Q 003087 66 HDVLGIVDDTHTVYFFKAN--GEEITRFTNKHLKVSLPIIGLIAQD--ETDVQRSCLCSFTVFTSDGFLHQIEISQDPSA 141 (849)
Q Consensus 66 G~~LAs~~~dgtIrlWd~~--g~~~~~l~~~~~~~~~~V~~l~fs~--~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~ 141 (849)
+..|++|..+|.|++|+.+ |...-.... ..+ .| .+.++- ++.. ..+...||.||.|++...+..
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s---~~e-~i-~~~Ip~~~~~~~-------~c~~~~dg~ir~~n~~p~k~~ 137 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCS---GEE-SI-DLGIPNGRDSSL-------GCVGAQDGRIRACNIKPNKVL 137 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhc---ccc-cc-eeccccccccce-------eEEeccCCceeeeccccCcee
Confidence 4779999999999999987 332111111 111 12 122211 1111 234578999999998765543
Q ss_pred ccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcC
Q 003087 142 SISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLE 207 (849)
Q Consensus 142 ~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~ 207 (849)
-+ .|+|. | -+|..+++.|++..++++.++ -.+.++.|++....+
T Consensus 138 g~------------~g~h~-------~-~~~e~~ivv~sd~~i~~a~~S--~d~~~k~W~ve~~~d 181 (238)
T KOG2444|consen 138 GY------------VGQHN-------F-ESGEELIVVGSDEFLKIADTS--HDRVLKKWNVEKIKD 181 (238)
T ss_pred ee------------ecccc-------C-CCcceeEEecCCceEEeeccc--cchhhhhcchhhhhc
Confidence 22 12333 2 234444445555433433211 123588898876433
No 379
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=87.92 E-value=4.8 Score=46.07 Aligned_cols=122 Identities=13% Similarity=0.068 Sum_probs=67.8
Q ss_pred ceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCC
Q 003087 162 NVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQG 241 (849)
Q Consensus 162 ~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG 241 (849)
.+....+||||+++|.+-+.+ ++..+.|++.|+.++..+.. .+... ....++|++||
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~--------G~e~~~l~v~Dl~tg~~l~d--------~i~~~-------~~~~~~W~~d~ 181 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDG--------GSEWYTLRVFDLETGKFLPD--------GIENP-------KFSSVSWSDDG 181 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEET--------TSSEEEEEEEETTTTEEEEE--------EEEEE-------ESEEEEECTTS
T ss_pred EeeeeeECCCCCEEEEEecCC--------CCceEEEEEEECCCCcCcCC--------ccccc-------ccceEEEeCCC
Confidence 356789999999998664332 12236788999887632111 11010 11139999999
Q ss_pred CEEEEEeCCC-----------cEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEE-EEEEe
Q 003087 242 KFVATSDTNG-----------CLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNIL-ILARK 309 (849)
Q Consensus 242 ~~LAs~s~Dg-----------tv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~l-a~a~~ 309 (849)
+.+.-...+. .|..|++.+.... ......+ ........++..++|++. ++.+.
T Consensus 182 ~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~-d~lvfe~--------------~~~~~~~~~~~~s~d~~~l~i~~~ 246 (414)
T PF02897_consen 182 KGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSE-DELVFEE--------------PDEPFWFVSVSRSKDGRYLFISSS 246 (414)
T ss_dssp SEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC---------------TTCTTSEEEEEE-TTSSEEEEEEE
T ss_pred CEEEEEEeCcccccccCCCCcEEEEEECCCChHh-CeeEEee--------------cCCCcEEEEEEecCcccEEEEEEE
Confidence 9988776555 2777888765220 0111110 011112567889999873 33332
Q ss_pred C----CcEEEEEecCC
Q 003087 310 S----SIITMIDVLSG 321 (849)
Q Consensus 310 d----gti~lwdl~~~ 321 (849)
. ..+.+.++..+
T Consensus 247 ~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 247 SGTSESEVYLLDLDDG 262 (414)
T ss_dssp SSSSEEEEEEEECCCT
T ss_pred ccccCCeEEEEecccc
Confidence 2 24677777764
No 380
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=87.41 E-value=18 Score=44.00 Aligned_cols=75 Identities=20% Similarity=0.299 Sum_probs=51.7
Q ss_pred CceEEEEEc--CCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEc
Q 003087 161 QNVICTDYH--PELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLIS 238 (849)
Q Consensus 161 ~~V~svafs--Pdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafS 238 (849)
..++++++| ...++||++++.. .|+++-..... ++... . +...|..-|++|+|=
T Consensus 164 ~SaWGLdIh~~~~~rlIAVSsNs~-------------~VTVFaf~l~~--~r~~~--------~-~s~~~~hNIP~VSFl 219 (717)
T PF08728_consen 164 ASAWGLDIHDYKKSRLIAVSSNSQ-------------EVTVFAFALVD--ERFYH--------V-PSHQHSHNIPNVSFL 219 (717)
T ss_pred CceeEEEEEecCcceEEEEecCCc-------------eEEEEEEeccc--ccccc--------c-cccccccCCCeeEee
Confidence 469999999 9999998876554 37887665421 01100 0 000145589999998
Q ss_pred cCC------CEEEEEeCCCcEEEEecC
Q 003087 239 PQG------KFVATSDTNGCLYIFEMD 259 (849)
Q Consensus 239 PDG------~~LAs~s~Dgtv~LWd~~ 259 (849)
++. -.|++++-.|.+-+|++.
T Consensus 220 ~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 220 DDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred cCCCCCccceEEEEEeccCcEEEEEEE
Confidence 865 289999999999999884
No 381
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=87.02 E-value=34 Score=39.87 Aligned_cols=57 Identities=7% Similarity=-0.017 Sum_probs=37.7
Q ss_pred ccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeee---e-cCCCCEEEEEECCCC
Q 003087 10 TKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFN---C-TGLGASIYGAWSESH 66 (849)
Q Consensus 10 ~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~---~-~~~~~v~~vafSPDG 66 (849)
....++++|.|||++|++-- .+.|++++..+....+...+. . .+......|||+||-
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 36689999999999998776 588888864332111221111 1 135667899999985
No 382
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.01 E-value=1.8 Score=53.46 Aligned_cols=98 Identities=12% Similarity=0.052 Sum_probs=66.7
Q ss_pred CCCEEEEEeCCCcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccc
Q 003087 65 SHDVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASIS 144 (849)
Q Consensus 65 DG~~LAs~~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~ 144 (849)
-+..+|.|++.|.|-+.|.+|+...-..+.+ +..+|.+++|+.++..... +=.+|.|.+||+.+++....+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~--v~~~Vtsvafn~dg~~l~~-------G~~~G~V~v~D~~~~k~l~~i 168 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNER--VQGPVTSVAFNQDGSLLLA-------GLGDGHVTVWDMHRAKILKVI 168 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCc--cCCcceeeEecCCCceecc-------ccCCCcEEEEEccCCcceeee
Confidence 5788999999999999999887533222222 3478999999876543222 147899999999987765443
Q ss_pred cccccCCcceeccccCCceEEEEEcCCCceEEEEec
Q 003087 145 SASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSN 180 (849)
Q Consensus 145 ~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~ 180 (849)
. ..|+...+|-.+.+..++..+.++..
T Consensus 169 ~---------e~~ap~t~vi~v~~t~~nS~llt~D~ 195 (1206)
T KOG2079|consen 169 T---------EHGAPVTGVIFVGRTSQNSKLLTSDT 195 (1206)
T ss_pred e---------ecCCccceEEEEEEeCCCcEEEEccC
Confidence 2 23333346777778778876666533
No 383
>PRK10115 protease 2; Provisional
Probab=86.74 E-value=90 Score=38.55 Aligned_cols=68 Identities=10% Similarity=0.058 Sum_probs=42.7
Q ss_pred ceEEEEEcCCCCeEEEEeC--C----eEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCC------CcEE
Q 003087 12 KQVSLFISPRGERVAVAAV--N----QVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDT------HTVY 79 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas~--~----~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~d------gtIr 79 (849)
.+..+.+||||++||.+.| | ++.+.+..++ ..+... ..+ .-..++|+|||+.|..+..+ ..|+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg--~~l~~~-i~~--~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETG--NWYPEL-LDN--VEPSFVWANDSWTFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCC--CCCCcc-ccC--cceEEEEeeCCCEEEEEEecCCCCCCCEEE
Confidence 3667899999999998853 2 5777776543 211110 111 11469999999988876543 2466
Q ss_pred EEecC
Q 003087 80 FFKAN 84 (849)
Q Consensus 80 lWd~~ 84 (849)
++++.
T Consensus 203 ~h~lg 207 (686)
T PRK10115 203 RHTIG 207 (686)
T ss_pred EEECC
Confidence 66664
No 384
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.53 E-value=2.1 Score=52.92 Aligned_cols=73 Identities=15% Similarity=0.242 Sum_probs=49.8
Q ss_pred cccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEE
Q 003087 228 VQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LIL 306 (849)
Q Consensus 228 h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~ 306 (849)
.+++|.+++|+-||++|+.|-.+|-|.+||++.+.. ++-+..++ .....|.-+-|-.++. +..
T Consensus 129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~-l~~i~e~~---------------ap~t~vi~v~~t~~nS~llt 192 (1206)
T KOG2079|consen 129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI-LKVITEHG---------------APVTGVIFVGRTSQNSKLLT 192 (1206)
T ss_pred cCCcceeeEecCCCceeccccCCCcEEEEEccCCcc-eeeeeecC---------------CccceEEEEEEeCCCcEEEE
Confidence 457999999999999999999999999999998643 34443221 1112355566666665 444
Q ss_pred EEeCCcEEEEEe
Q 003087 307 ARKSSIITMIDV 318 (849)
Q Consensus 307 a~~dgti~lwdl 318 (849)
+...|. +|.+
T Consensus 193 ~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 193 SDTGGS--FWKL 202 (1206)
T ss_pred ccCCCc--eEEE
Confidence 555554 5555
No 385
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=85.77 E-value=7.9 Score=46.56 Aligned_cols=96 Identities=15% Similarity=0.251 Sum_probs=55.9
Q ss_pred eeeEEEecCCcCcccceeccccceeeccCCCccccccceEEE--ccCCCEEEEEeCCCcEEEEecC-----CCccccccc
Q 003087 196 CISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLI--SPQGKFVATSDTNGCLYIFEMD-----KDNFSLSKF 268 (849)
Q Consensus 196 ~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vaf--SPDG~~LAs~s~Dgtv~LWd~~-----~~~~~l~~~ 268 (849)
.+++||..++. ++. +..| . ..+.|..+.| .|||+.+.+.|....|.|+.-. +... .|
T Consensus 52 ~LtIWD~~~~~-lE~------~~~f----~--~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p---~w 115 (631)
T PF12234_consen 52 ELTIWDTRSGV-LEY------EESF----S--EDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP---SW 115 (631)
T ss_pred EEEEEEcCCcE-EEE------eeee----c--CCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc---cc
Confidence 48999998753 110 0111 0 2456666655 5999999999999999998442 1111 12
Q ss_pred ccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEE
Q 003087 269 ACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMID 317 (849)
Q Consensus 269 ~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwd 317 (849)
..-. ...+ ..++ ..+|.|..|-+||.+++|+ ++.+.|+|
T Consensus 116 ~~i~--~i~i-~~~T------~h~Igds~Wl~~G~LvV~s-GNqlfv~d 154 (631)
T PF12234_consen 116 APIR--KIDI-SSHT------PHPIGDSIWLKDGTLVVGS-GNQLFVFD 154 (631)
T ss_pred ceeE--EEEe-ecCC------CCCccceeEecCCeEEEEe-CCEEEEEC
Confidence 1000 0001 1122 1467899999999887776 34455554
No 386
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=85.43 E-value=73 Score=36.30 Aligned_cols=68 Identities=15% Similarity=0.092 Sum_probs=43.1
Q ss_pred eEEEEEcCCCCeEEEE-e-CC----eEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCC----------
Q 003087 13 QVSLFISPRGERVAVA-A-VN----QVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTH---------- 76 (849)
Q Consensus 13 v~slafSPdG~~LAsa-s-~~----~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dg---------- 76 (849)
+...++||||++||.+ + +| +++++|+..+ ..+... .. ......++|++||+.+.....+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg--~~l~d~-i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG--KFLPDG-IE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT--EEEEEE-EE-EEESEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC--cCcCCc-cc-ccccceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence 3467899999999977 2 22 5888887653 222111 00 11113499999999988776443
Q ss_pred -cEEEEecC
Q 003087 77 -TVYFFKAN 84 (849)
Q Consensus 77 -tIrlWd~~ 84 (849)
.|++|++.
T Consensus 202 ~~v~~~~~g 210 (414)
T PF02897_consen 202 RQVYRHKLG 210 (414)
T ss_dssp EEEEEEETT
T ss_pred cEEEEEECC
Confidence 26777764
No 387
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=85.21 E-value=0.39 Score=55.92 Aligned_cols=168 Identities=15% Similarity=0.166 Sum_probs=96.4
Q ss_pred cccccceEEEEEcC-CCCeEEEEe-----CCeEEEEecCCCCCcceeeeeec-C-CCCEEEEEECCCCCEEEEEeCCCcE
Q 003087 7 PRKTKKQVSLFISP-RGERVAVAA-----VNQVTILQKDDDYQEPCGIFNCT-G-LGASIYGAWSESHDVLGIVDDTHTV 78 (849)
Q Consensus 7 ~~~~~~v~slafSP-dG~~LAsas-----~~~i~iw~~~~~~~~~~~~~~~~-~-~~~v~~vafSPDG~~LAs~~~dgtI 78 (849)
|+.-+..+++||++ |...||.|- +..++|||....+..|....... + .....+++|--|.+++.+|.....|
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~ 178 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSV 178 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchh
Confidence 56667788999988 567888874 23799999775543343322211 1 2344588999999999999999999
Q ss_pred EEEecCCccceecccccccccccEEEEEecC-CcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceecc
Q 003087 79 YFFKANGEEITRFTNKHLKVSLPIIGLIAQD-ETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRR 157 (849)
Q Consensus 79 rlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~-~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~ 157 (849)
+++|+.... .+...-. ...|.++...| ... .|.. .+||.|-+||... .....+.... .+.-
T Consensus 179 ~ifdlRqs~-~~~~svn---Tk~vqG~tVdp~~~n-------Y~cs-~~dg~iAiwD~~r-nienpl~~i~-~~~N---- 240 (783)
T KOG1008|consen 179 HIFDLRQSL-DSVSSVN---TKYVQGITVDPFSPN-------YFCS-NSDGDIAIWDTYR-NIENPLQIIL-RNEN---- 240 (783)
T ss_pred hhhhhhhhh-hhhhhhh---hhhcccceecCCCCC-------ceec-cccCceeeccchh-hhccHHHHHh-hCCC----
Confidence 999985322 1110000 01355555554 111 1222 5699999999421 1111110000 0000
Q ss_pred ccCCceEEEEEcCCCc-eEEEEecCCCCccccCCCCCCceeeEEEecC
Q 003087 158 QFPQNVICTDYHPELS-LLSVVSNTDTSSLTSSGNSGPCCISLWRRCH 204 (849)
Q Consensus 158 ~~~~~V~svafsPdg~-lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~ 204 (849)
.-+..+..++|.|-.. +||+...|. + +|++.++..
T Consensus 241 ~~~~~l~~~aycPtrtglla~l~RdS----------~--tIrlydi~~ 276 (783)
T KOG1008|consen 241 KKPKQLFALAYCPTRTGLLAVLSRDS----------I--TIRLYDICV 276 (783)
T ss_pred CcccceeeEEeccCCcchhhhhccCc----------c--eEEEecccc
Confidence 0112489999999643 455666664 2 588887754
No 388
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=84.68 E-value=16 Score=33.85 Aligned_cols=64 Identities=14% Similarity=0.155 Sum_probs=41.2
Q ss_pred EEEEEECC-CC---CEEEEEeCCCcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEE
Q 003087 57 SIYGAWSE-SH---DVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQ 132 (849)
Q Consensus 57 v~~vafSP-DG---~~LAs~~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~l 132 (849)
|++++++. || .-|.+|+.|..||+|+-. +.+..++.. ..|.++.-...+ +|+-+-.+|||-+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-e~~~Ei~e~-----~~v~~L~~~~~~--------~F~Y~l~NGTVGv 67 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-EIVAEITET-----DKVTSLCSLGGG--------RFAYALANGTVGV 67 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-cEEEEEecc-----cceEEEEEcCCC--------EEEEEecCCEEEE
Confidence 66777765 44 579999999999999854 444554332 356666643321 3555567777766
Q ss_pred EE
Q 003087 133 IE 134 (849)
Q Consensus 133 w~ 134 (849)
|+
T Consensus 68 Y~ 69 (111)
T PF14783_consen 68 YD 69 (111)
T ss_pred Ee
Confidence 65
No 389
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=84.60 E-value=21 Score=40.41 Aligned_cols=19 Identities=16% Similarity=0.088 Sum_probs=15.6
Q ss_pred ceEEEEEcCCCceEEEEec
Q 003087 162 NVICTDYHPELSLLSVVSN 180 (849)
Q Consensus 162 ~V~svafsPdg~lLas~g~ 180 (849)
..+.++|.|||++.++.|.
T Consensus 125 ~~~~l~~gpDG~LYv~~G~ 143 (367)
T TIGR02604 125 SLNSLAWGPDGWLYFNHGN 143 (367)
T ss_pred cccCceECCCCCEEEeccc
Confidence 5789999999998776653
No 390
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=84.45 E-value=18 Score=41.40 Aligned_cols=112 Identities=9% Similarity=0.008 Sum_probs=64.0
Q ss_pred cceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeee---c-CCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCc
Q 003087 11 KKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNC---T-GLGASIYGAWSESHDVLGIVDDTHTVYFFKANGE 86 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~---~-~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~ 86 (849)
..+.+++|++||..+.++.++.+ +|..+++.......+.. . ....+.+++|.+|++.+++|. .|.|....-.|+
T Consensus 281 ~~l~~v~~~~dg~l~l~g~~G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~-~G~v~~s~D~G~ 358 (398)
T PLN00033 281 RRIQNMGWRADGGLWLLTRGGGL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGG-SGILLRSTDGGK 358 (398)
T ss_pred cceeeeeEcCCCCEEEEeCCceE-EEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEEC-CCcEEEeCCCCc
Confidence 45889999999999988877764 44433221000001221 1 123478999999999777665 477766654455
Q ss_pred cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEE
Q 003087 87 EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQI 133 (849)
Q Consensus 87 ~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw 133 (849)
. ................+.|.++.. .++.+.+|.|-.|
T Consensus 359 t-W~~~~~~~~~~~~ly~v~f~~~~~--------g~~~G~~G~il~~ 396 (398)
T PLN00033 359 S-WKRDKGADNIAANLYSVKFFDDKK--------GFVLGNDGVLLRY 396 (398)
T ss_pred c-eeEccccCCCCcceeEEEEcCCCc--------eEEEeCCcEEEEe
Confidence 4 222221112234567888865322 3344778877544
No 391
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=84.28 E-value=71 Score=37.90 Aligned_cols=193 Identities=14% Similarity=0.172 Sum_probs=95.8
Q ss_pred CEEEEEECCCCCEEEEEe---CCCcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEE
Q 003087 56 ASIYGAWSESHDVLGIVD---DTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQ 132 (849)
Q Consensus 56 ~v~~vafSPDG~~LAs~~---~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~l 132 (849)
.+..+||- ||+.++-.. .+|.+++ |.. ..+ ++. -.|.++.|.|-..+...+ +........|.+
T Consensus 21 PvhGlaWT-DGkqVvLT~L~l~~gE~kf----Gds-~vi--GqF---EhV~GlsW~P~~~~~~pa---LLAVQHkkhVtV 86 (671)
T PF15390_consen 21 PVHGLAWT-DGKQVVLTDLQLHNGEPKF----GDS-KVI--GQF---EHVHGLSWAPPCTADTPA---LLAVQHKKHVTV 86 (671)
T ss_pred cccceEec-CCCEEEEEeeeeeCCcccc----CCc-cEe--ecc---ceeeeeeecCcccCCCCc---eEEEeccceEEE
Confidence 56789998 888776443 2333332 111 011 111 248899998843332222 334478889999
Q ss_pred EEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEE-EecCCcCcccc
Q 003087 133 IEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLW-RRCHNLELEQL 211 (849)
Q Consensus 133 w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW-~~~~~~~~~~l 211 (849)
|.+....... .+.+-++.-.++.-++---....|||....|++-...+ +++. ++... -.++
T Consensus 87 WqL~~s~~e~--~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d--------------vSV~~sV~~d--~srV 148 (671)
T PF15390_consen 87 WQLCPSTTER--NKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD--------------VSVLPSVHCD--SSRV 148 (671)
T ss_pred EEeccCcccc--ccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc--------------eeEeeeeeeC--CceE
Confidence 9986322110 00000000011111111113456999999987755444 2222 11110 0111
Q ss_pred e-eccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcE--EEEecCCCcccccccccccccccccccccCCCCCC
Q 003087 212 Y-TTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCL--YIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTK 288 (849)
Q Consensus 212 ~-~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv--~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 288 (849)
. +.. .++-|.+..|.+||+.|+.+-.+ .+ .|||-... .+....+. ++++
T Consensus 149 kaDi~------------~~G~IhCACWT~DG~RLVVAvGS-sLHSyiWd~~qK--tL~~Csfc-----PVFd-------- 200 (671)
T PF15390_consen 149 KADIK------------TSGLIHCACWTKDGQRLVVAVGS-SLHSYIWDSAQK--TLHRCSFC-----PVFD-------- 200 (671)
T ss_pred EEecc------------CCceEEEEEecCcCCEEEEEeCC-eEEEEEecCchh--hhhhCCcc-----eeec--------
Confidence 1 111 23467799999999998876433 44 47876543 23332221 2221
Q ss_pred CCCCcEEEEEecCCEEEEEE
Q 003087 289 PISDITDFAWWSDNILILAR 308 (849)
Q Consensus 289 ~~~~v~~vaws~D~~la~a~ 308 (849)
-...|.+|.=--|.++|+|.
T Consensus 201 v~~~Icsi~AT~dsqVAvaT 220 (671)
T PF15390_consen 201 VGGYICSIEATVDSQVAVAT 220 (671)
T ss_pred CCCceEEEEEeccceEEEEe
Confidence 11346666655577788776
No 392
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=84.09 E-value=26 Score=38.55 Aligned_cols=177 Identities=9% Similarity=0.075 Sum_probs=95.5
Q ss_pred eEEEEecCCCCCcceeeeeecCCCCE---EEEEECCC----CCEEEEEeC----------CCcEEEEecCCc-----cce
Q 003087 32 QVTILQKDDDYQEPCGIFNCTGLGAS---IYGAWSES----HDVLGIVDD----------THTVYFFKANGE-----EIT 89 (849)
Q Consensus 32 ~i~iw~~~~~~~~~~~~~~~~~~~~v---~~vafSPD----G~~LAs~~~----------dgtIrlWd~~g~-----~~~ 89 (849)
.|+|.|..+. ..+..+.......+ ..+.|.-+ -.+||+|.. .|.|.++++... .+.
T Consensus 3 ~i~l~d~~~~--~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 3 SIRLVDPTTF--EVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp EEEEEETTTS--SEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred EEEEEeCCCC--eEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 4666664332 23334433222223 34555543 467776643 288999998752 333
Q ss_pred ecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCC-CcccccccccCCcceeccccCCceEEEEE
Q 003087 90 RFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDP-SASISSASASSSGLTLRRQFPQNVICTDY 168 (849)
Q Consensus 90 ~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~V~svaf 168 (849)
.+.. ..+..+|.+|.--.+ . .+++..+.|.+|++.... ...... + +.+..|.++..
T Consensus 81 ~i~~--~~~~g~V~ai~~~~~---------~-lv~~~g~~l~v~~l~~~~~l~~~~~---------~--~~~~~i~sl~~ 137 (321)
T PF03178_consen 81 LIHS--TEVKGPVTAICSFNG---------R-LVVAVGNKLYVYDLDNSKTLLKKAF---------Y--DSPFYITSLSV 137 (321)
T ss_dssp EEEE--EEESS-EEEEEEETT---------E-EEEEETTEEEEEEEETTSSEEEEEE---------E---BSSSEEEEEE
T ss_pred EEEE--EeecCcceEhhhhCC---------E-EEEeecCEEEEEEccCcccchhhhe---------e--cceEEEEEEec
Confidence 3322 233466777663221 2 334567899999998766 221100 1 11224666666
Q ss_pred cCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCc-CcccceeccccceeeccCCCccccccceEEEccCCCEEEEE
Q 003087 169 HPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNL-ELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATS 247 (849)
Q Consensus 169 sPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~-~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~ 247 (849)
. +.++++|...+ .|.++..+... .+..+.. . . ...++.++.|-+|++.++.+
T Consensus 138 ~--~~~I~vgD~~~-------------sv~~~~~~~~~~~l~~va~-d-------~----~~~~v~~~~~l~d~~~~i~~ 190 (321)
T PF03178_consen 138 F--KNYILVGDAMK-------------SVSLLRYDEENNKLILVAR-D-------Y----QPRWVTAAEFLVDEDTIIVG 190 (321)
T ss_dssp E--TTEEEEEESSS-------------SEEEEEEETTTE-EEEEEE-E-------S----S-BEEEEEEEE-SSSEEEEE
T ss_pred c--ccEEEEEEccc-------------CEEEEEEEccCCEEEEEEe-c-------C----CCccEEEEEEecCCcEEEEE
Confidence 5 55777665443 26666554421 1211210 0 0 12467889998888899999
Q ss_pred eCCCcEEEEecCC
Q 003087 248 DTNGCLYIFEMDK 260 (849)
Q Consensus 248 s~Dgtv~LWd~~~ 260 (849)
+.+|.|.++..+.
T Consensus 191 D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 191 DKDGNLFVLRYNP 203 (321)
T ss_dssp ETTSEEEEEEE-S
T ss_pred cCCCeEEEEEECC
Confidence 9999999998874
No 393
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=83.88 E-value=13 Score=43.26 Aligned_cols=56 Identities=9% Similarity=0.078 Sum_probs=35.2
Q ss_pred CEEEEEECCCCCEEEEEeCCCcEEEEecCCcc---ceeccccccc-ccccEEEEEecCCc
Q 003087 56 ASIYGAWSESHDVLGIVDDTHTVYFFKANGEE---ITRFTNKHLK-VSLPIIGLIAQDET 111 (849)
Q Consensus 56 ~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~---~~~l~~~~~~-~~~~V~~l~fs~~~ 111 (849)
.-+.++|.|||++|++-...|+|++++..+.. +..+...... -..-..+|+|+|+-
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 34789999999988777667999999865432 2122110000 01336789998864
No 394
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=83.60 E-value=2.1 Score=31.28 Aligned_cols=26 Identities=12% Similarity=0.169 Sum_probs=18.2
Q ss_pred CEEEEEECCCCCEEEEEe-CC--CcEEEE
Q 003087 56 ASIYGAWSESHDVLGIVD-DT--HTVYFF 81 (849)
Q Consensus 56 ~v~~vafSPDG~~LAs~~-~d--gtIrlW 81 (849)
.-...+|||||+.|+-++ .+ |.-.||
T Consensus 10 ~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 456889999999999654 44 565555
No 395
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=83.55 E-value=62 Score=37.22 Aligned_cols=213 Identities=12% Similarity=0.086 Sum_probs=86.2
Q ss_pred EEEEcCCCCeEEEE-eC------CeEEEEecCCCCCcceeeeeec-CCCCE-EEEEECCCCCEEEEEeC-----------
Q 003087 15 SLFISPRGERVAVA-AV------NQVTILQKDDDYQEPCGIFNCT-GLGAS-IYGAWSESHDVLGIVDD----------- 74 (849)
Q Consensus 15 slafSPdG~~LAsa-s~------~~i~iw~~~~~~~~~~~~~~~~-~~~~v-~~vafSPDG~~LAs~~~----------- 74 (849)
.+--=|+|+.+.|+ ++ +.+.+.|.++ -...+.+... +.... -..-|.|-.+.++|.+.
T Consensus 134 T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t--f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~ 211 (461)
T PF05694_consen 134 TVHCLPDGRIMISALGDADGNGPGGFVLLDGET--FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFN 211 (461)
T ss_dssp EEEE-SS--EEEEEEEETTS-S--EEEEE-TTT----EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---
T ss_pred eeeecCCccEEEEeccCCCCCCCCcEEEEcCcc--ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCC
Confidence 34445899998887 31 2466666442 2344555422 21222 47888899999988763
Q ss_pred ---------CCcEEEEecCC-ccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEe-cCCCCc--
Q 003087 75 ---------THTVYFFKANG-EEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEI-SQDPSA-- 141 (849)
Q Consensus 75 ---------dgtIrlWd~~g-~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~-~~~~~~-- 141 (849)
-.+++|||... +.+.++.-+.. .....-|.|..+-..... |+.+--.++|-+|.- ..+.-.
T Consensus 212 ~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~--g~~pLEvRflH~P~~~~g----Fvg~aLss~i~~~~k~~~g~W~a~ 285 (461)
T PF05694_consen 212 PEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE--GQMPLEVRFLHDPDANYG----FVGCALSSSIWRFYKDDDGEWAAE 285 (461)
T ss_dssp TTTHHHH-S--EEEEEETTTTEEEEEEES-TT--EEEEEEEEE-SSTT--EE----EEEEE--EEEEEEEE-ETTEEEEE
T ss_pred hhHhhcccccCeEEEEECCCCcEeeEEecCCC--CCceEEEEecCCCCccce----EEEEeccceEEEEEEcCCCCeeee
Confidence 36799999984 44444432211 123456778543332221 333333344444433 222110
Q ss_pred cccc-ccccCCcceec------cccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceec
Q 003087 142 SISS-ASASSSGLTLR------RQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTT 214 (849)
Q Consensus 142 ~~~~-~~~~~~~~~l~------~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~ 214 (849)
.+++ ..-....+.+. +.-+.-|+.+..|.|.++|.+...-. |. |+.+|+............
T Consensus 286 kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~----------Gd--vrqYDISDP~~Pkl~gqv 353 (461)
T PF05694_consen 286 KVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLH----------GD--VRQYDISDPFNPKLVGQV 353 (461)
T ss_dssp EEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTT----------TE--EEEEE-SSTTS-EEEEEE
T ss_pred EEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccC----------Cc--EEEEecCCCCCCcEEeEE
Confidence 0111 00000001110 01133589999999999999876654 43 899999875433222121
Q ss_pred cccceeec-----cCCCccccccceEEEccCCCEEEEE
Q 003087 215 QIEGLYCE-----PKGHEVQLAHPKVLISPQGKFVATS 247 (849)
Q Consensus 215 ~~~~~~~~-----~~g~~h~~~V~~vafSPDG~~LAs~ 247 (849)
..+|.+.+ .+|..-.++..-|.+|-||++|...
T Consensus 354 ~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 354 FLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp E-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred EECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 12232211 1111122355678899999998764
No 396
>PRK13684 Ycf48-like protein; Provisional
Probab=83.54 E-value=80 Score=35.21 Aligned_cols=76 Identities=11% Similarity=0.059 Sum_probs=45.7
Q ss_pred cccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEe
Q 003087 230 LAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARK 309 (849)
Q Consensus 230 ~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~ 309 (849)
..+.++++.|+|+.++. +..|.+.+=..+++ ..|.... .|... ....+.+++|.+++.+.+++.
T Consensus 215 ~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G----~sW~~~~----------~~~~~-~~~~l~~v~~~~~~~~~~~G~ 278 (334)
T PRK13684 215 RRLQSMGFQPDGNLWML-ARGGQIRFNDPDDL----ESWSKPI----------IPEIT-NGYGYLDLAYRTPGEIWAGGG 278 (334)
T ss_pred ccceeeeEcCCCCEEEE-ecCCEEEEccCCCC----Ccccccc----------CCccc-cccceeeEEEcCCCCEEEEcC
Confidence 47889999999998775 45687643223333 2343100 01000 113467899998888878888
Q ss_pred CCcEEEEEecCCc
Q 003087 310 SSIITMIDVLSGL 322 (849)
Q Consensus 310 dgti~lwdl~~~~ 322 (849)
+|.|. .....++
T Consensus 279 ~G~v~-~S~d~G~ 290 (334)
T PRK13684 279 NGTLL-VSKDGGK 290 (334)
T ss_pred CCeEE-EeCCCCC
Confidence 88764 4445554
No 397
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=83.53 E-value=6 Score=48.65 Aligned_cols=74 Identities=12% Similarity=0.221 Sum_probs=51.8
Q ss_pred cceEEEEEcCCCCeEEEEeCCeEEEEecCC-----C-C--Cc---ceeeee-------ecCCCCEEEEEECCC---CCEE
Q 003087 11 KKQVSLFISPRGERVAVAAVNQVTILQKDD-----D-Y--QE---PCGIFN-------CTGLGASIYGAWSES---HDVL 69 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~~~i~iw~~~~-----~-~--~~---~~~~~~-------~~~~~~v~~vafSPD---G~~L 69 (849)
-.|..|.+||+|++||.++...|.|..+.. + + +. .+.... .+....|..+.|.|. +..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 468899999999999999876665554321 1 0 11 111111 111446789999987 5899
Q ss_pred EEEeCCCcEEEEecC
Q 003087 70 GIVDDTHTVYFFKAN 84 (849)
Q Consensus 70 As~~~dgtIrlWd~~ 84 (849)
++-.+|+++|++|+.
T Consensus 165 ~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 165 VVLTSDNTLRLYDIS 179 (717)
T ss_pred EEEecCCEEEEEecC
Confidence 999999999999996
No 398
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=82.04 E-value=2.6 Score=32.07 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=26.5
Q ss_pred ccceEEEccCCC---EEEEEeCCCcEEEEecCC
Q 003087 231 AHPKVLISPQGK---FVATSDTNGCLYIFEMDK 260 (849)
Q Consensus 231 ~V~~vafSPDG~---~LAs~s~Dgtv~LWd~~~ 260 (849)
.|+++.|||++- +||-+-.-|.|.|+|+.+
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 688999998555 999999999999999984
No 399
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=81.12 E-value=44 Score=37.08 Aligned_cols=57 Identities=14% Similarity=0.063 Sum_probs=41.4
Q ss_pred CEEEEEECCCCCEEEEEeCC------CcEEEEecCCccceecc-ccc----------ccccccEEEEEecCCcc
Q 003087 56 ASIYGAWSESHDVLGIVDDT------HTVYFFKANGEEITRFT-NKH----------LKVSLPIIGLIAQDETD 112 (849)
Q Consensus 56 ~v~~vafSPDG~~LAs~~~d------gtIrlWd~~g~~~~~l~-~~~----------~~~~~~V~~l~fs~~~~ 112 (849)
...+|++.+||.++++...+ ..|+-++..|+.+..+. +.. ...+.-.-+|+++|++.
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~ 159 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGR 159 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCC
Confidence 34589999999999999999 99999998887755552 111 11234567899988755
No 400
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=80.83 E-value=56 Score=37.04 Aligned_cols=27 Identities=33% Similarity=0.571 Sum_probs=15.9
Q ss_pred ceEEEccCCCEE-EEEeCCCcEEEEecC
Q 003087 233 PKVLISPQGKFV-ATSDTNGCLYIFEMD 259 (849)
Q Consensus 233 ~~vafSPDG~~L-As~s~Dgtv~LWd~~ 259 (849)
+.++|||||+.| .+.+..|...|+-++
T Consensus 354 Php~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 354 PHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp ---EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred CCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 679999999985 555678887777554
No 401
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=79.97 E-value=23 Score=43.84 Aligned_cols=52 Identities=12% Similarity=0.050 Sum_probs=36.0
Q ss_pred ceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCC
Q 003087 118 LCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTD 182 (849)
Q Consensus 118 ~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~ 182 (849)
.+++++++.+|-||++|- .|....+ .|. +...+|..|..+.||++++. -++.
T Consensus 588 ~G~iavgs~~G~IRLyd~-~g~~AKT----------~lp-~lG~pI~~iDvt~DGkwila-Tc~t 639 (794)
T PF08553_consen 588 DGYIAVGSNKGDIRLYDR-LGKRAKT----------ALP-GLGDPIIGIDVTADGKWILA-TCKT 639 (794)
T ss_pred CceEEEEeCCCcEEeecc-cchhhhh----------cCC-CCCCCeeEEEecCCCcEEEE-eecc
Confidence 457999999999999983 2322111 123 33467999999999999854 3553
No 402
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=79.45 E-value=1.2e+02 Score=34.50 Aligned_cols=68 Identities=13% Similarity=0.093 Sum_probs=35.9
Q ss_pred EEcCCCCeEEEEe--CC--eEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecCCcc
Q 003087 17 FISPRGERVAVAA--VN--QVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEE 87 (849)
Q Consensus 17 afSPdG~~LAsas--~~--~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~ 87 (849)
.|.+||+.|.-+| ++ .+-+.|+.++ . +..++.......-...+||+++.|.......+|+--|+.+.+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~--~-i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e 113 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATG--E-ITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE 113 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT---E-EEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccC--E-EEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCc
Confidence 6899998776665 34 4555565542 1 223332111112257788999999888777788888887543
No 403
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.03 E-value=96 Score=33.19 Aligned_cols=27 Identities=4% Similarity=-0.038 Sum_probs=22.5
Q ss_pred EEECCCCCEEEEEeCCCcEEEEecCCc
Q 003087 60 GAWSESHDVLGIVDDTHTVYFFKANGE 86 (849)
Q Consensus 60 vafSPDG~~LAs~~~dgtIrlWd~~g~ 86 (849)
..--|||+++-.|+.|++.+..|....
T Consensus 99 a~~d~~~glIycgshd~~~yalD~~~~ 125 (354)
T KOG4649|consen 99 AQCDFDGGLIYCGSHDGNFYALDPKTY 125 (354)
T ss_pred eEEcCCCceEEEecCCCcEEEeccccc
Confidence 445678999999999999999998643
No 404
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=78.33 E-value=34 Score=39.13 Aligned_cols=210 Identities=14% Similarity=0.102 Sum_probs=98.1
Q ss_pred cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeee---ec------CCCCEEEEEECC-----CC---CEEE
Q 003087 9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFN---CT------GLGASIYGAWSE-----SH---DVLG 70 (849)
Q Consensus 9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~---~~------~~~~v~~vafSP-----DG---~~LA 70 (849)
+.+.|.+++.| |=-.+|+|. +|++.|.|.++. .-.+. .+ ....++++.|+. |+ =.|.
T Consensus 85 ~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGP----avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 85 KQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGP----AVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp -S-SEEEEEE--BTSEEEEEETTSEEEEEETTTT----EEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred cCCcEeEEecC-CCcEEEEEecCCcEEEEECCCC----eEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 46899999998 667999998 689999998642 11222 01 134577888872 33 5677
Q ss_pred EEeCCCcEEEEecC----CccceecccccccccccEEEEE-ecC-Cc-ccc-----------cccceeEEEEeCCCcEEE
Q 003087 71 IVDDTHTVYFFKAN----GEEITRFTNKHLKVSLPIIGLI-AQD-ET-DVQ-----------RSCLCSFTVFTSDGFLHQ 132 (849)
Q Consensus 71 s~~~dgtIrlWd~~----g~~~~~l~~~~~~~~~~V~~l~-fs~-~~-~~~-----------~s~~~~~~~~s~Dg~v~l 132 (849)
+|...|++.+|.+. |.-.............+|..+. |+. ++ .+. +.....+.++..+..+|+
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 88899999999763 2111111111111224455544 322 11 111 112234667777888999
Q ss_pred EEecCCCCcccccccccCCcceeccccCCceEEEEE-----cCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcC
Q 003087 133 IEISQDPSASISSASASSSGLTLRRQFPQNVICTDY-----HPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLE 207 (849)
Q Consensus 133 w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svaf-----sPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~ 207 (849)
+...+.+... +.+. .+....++.| ...+..|+.--.++. |++..+ ++
T Consensus 240 ~~~~~~k~~~----------K~~~--~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~-------------i~i~SL---P~ 291 (395)
T PF08596_consen 240 FKPPKSKGAH----------KSFD--DPFLCSSASVVPTISRNGGYCLVCLFNNGS-------------IRIYSL---PS 291 (395)
T ss_dssp E-TT---EEE----------EE-S--S-EEEEEEEEEEEE-EEEEEEEEEEETTSE-------------EEEEET---TT
T ss_pred EeCCCCcccc----------eeec--cccccceEEEEeecccCCceEEEEEECCCc-------------EEEEEC---CC
Confidence 8765443211 1221 1112334444 235556666656642 666544 22
Q ss_pred cccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecC
Q 003087 208 LEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMD 259 (849)
Q Consensus 208 ~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~ 259 (849)
++.+...+..... +...+...+|+++|..++-.|.. .+.++.+-
T Consensus 292 Lkei~~~~l~~~~-------d~~~~~~ssis~~Gdi~~~~gps-E~~l~sv~ 335 (395)
T PF08596_consen 292 LKEIKSVSLPPPL-------DSRRLSSSSISRNGDIFYWTGPS-EIQLFSVW 335 (395)
T ss_dssp --EEEEEE-SS----------HHHHTT-EE-TTS-EEEE-SSS-EEEEEEEE
T ss_pred chHhhcccCCCcc-------ccccccccEECCCCCEEEEeCcc-cEEEEEEE
Confidence 4444332211100 33456788999999988876554 34444443
No 405
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.14 E-value=23 Score=40.45 Aligned_cols=118 Identities=13% Similarity=0.069 Sum_probs=70.0
Q ss_pred eEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccc-eeccccceeeccCCCccccccceEEEccCC
Q 003087 163 VICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQL-YTTQIEGLYCEPKGHEVQLAHPKVLISPQG 241 (849)
Q Consensus 163 V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l-~~~~~~~~~~~~~g~~h~~~V~~vafSPDG 241 (849)
-+.|-|.-..+.|...-+.+ +.-|-+.+..+-.++ ++. . ..++|.++.||||.
T Consensus 25 sngvFfDDaNkqlfavrSgg--------------atgvvvkgpndDVpiSfdm-------~-----d~G~I~SIkFSlDn 78 (657)
T KOG2377|consen 25 SNGVFFDDANKQLFAVRSGG--------------ATGVVVKGPNDDVPISFDM-------D-----DKGEIKSIKFSLDN 78 (657)
T ss_pred ccceeeccCcceEEEEecCC--------------eeEEEEeCCCCCCCceeee-------c-----CCCceeEEEeccCc
Confidence 45666766666654432322 456877664322222 111 1 23489999999999
Q ss_pred CEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEecCC
Q 003087 242 KFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSG 321 (849)
Q Consensus 242 ~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~~~ 321 (849)
+.||.--.|.+|.+....+.+. +....... +.....|..+.|+..-.+|..+..| +-++.+...
T Consensus 79 kilAVQR~~~~v~f~nf~~d~~-~l~~~~~c--------------k~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 79 KILAVQRTSKTVDFCNFIPDNS-QLEYTQEC--------------KTKNANILGFCWTSSTEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred ceEEEEecCceEEEEecCCCch-hhHHHHHh--------------ccCcceeEEEEEecCeeEEEEecCC-eEEEEEchh
Confidence 9999999999999998865532 11211000 1112347778886655577766544 456655544
Q ss_pred c
Q 003087 322 L 322 (849)
Q Consensus 322 ~ 322 (849)
+
T Consensus 143 k 143 (657)
T KOG2377|consen 143 K 143 (657)
T ss_pred h
Confidence 4
No 406
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=76.24 E-value=13 Score=37.35 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=27.1
Q ss_pred cccceEEEccCC------CEEEEEeCCCcEEEEecCCC
Q 003087 230 LAHPKVLISPQG------KFVATSDTNGCLYIFEMDKD 261 (849)
Q Consensus 230 ~~V~~vafSPDG------~~LAs~s~Dgtv~LWd~~~~ 261 (849)
..|.+++|||-| -+||+...+|.|.||.-.+.
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 378899999955 46999999999999988753
No 407
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.35 E-value=1.3e+02 Score=32.83 Aligned_cols=172 Identities=12% Similarity=0.118 Sum_probs=89.3
Q ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEE-ecCCccceecccccccccccEEEEEecCCcccccccceeEEEEe-CCCcEE
Q 003087 54 LGASIYGAWSESHDVLGIVDDTHTVYFF-KANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFT-SDGFLH 131 (849)
Q Consensus 54 ~~~v~~vafSPDG~~LAs~~~dgtIrlW-d~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s-~Dg~v~ 131 (849)
...+.+++|+||.++|-+....+.--|| +.+|+.+.+++-.- |++.-.......+.|++.. .++++.
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g-----------~~DpE~Ieyig~n~fvi~dER~~~l~ 153 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG-----------FSDPETIEYIGGNQFVIVDERDRALY 153 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc-----------cCChhHeEEecCCEEEEEehhcceEE
Confidence 5568999999999999988887776676 56788887775321 2221111112222343332 244555
Q ss_pred EEEecCCCCcccccccccCCcceecccc--CCceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcC-c
Q 003087 132 QIEISQDPSASISSASASSSGLTLRRQF--PQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLE-L 208 (849)
Q Consensus 132 lw~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~-~ 208 (849)
++.+..+....... ...++|.... ..+--.+||+|....|.++=.-+- ++++.+....+ +
T Consensus 154 ~~~vd~~t~~~~~~----~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P-------------~~I~~~~~~~~~l 216 (316)
T COG3204 154 LFTVDADTTVISAK----VQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNP-------------IGIFEVTQSPSSL 216 (316)
T ss_pred EEEEcCCccEEecc----ceEEeccccCCCCcCceeeecCCCCceEEEEEccCC-------------cEEEEEecCCccc
Confidence 55544332110000 0012232211 236789999999888877644432 33443333211 1
Q ss_pred cc-c-eeccc-cceeeccCCCccccccceEEEcc-CCCEEEEEeCCCcEEEEecCCC
Q 003087 209 EQ-L-YTTQI-EGLYCEPKGHEVQLAHPKVLISP-QGKFVATSDTNGCLYIFEMDKD 261 (849)
Q Consensus 209 ~~-l-~~~~~-~~~~~~~~g~~h~~~V~~vafSP-DG~~LAs~s~Dgtv~LWd~~~~ 261 (849)
.. + ..... ..++ -..|.++.|.| .|.+|+-++.++.|.--|..+.
T Consensus 217 ~~~~~~~~~~~~~~f--------~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 217 SVHASLDPTADRDLF--------VLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ccccccCcccccceE--------eeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 00 0 00000 0111 12466777774 4566666667777776777665
No 408
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=74.93 E-value=11 Score=46.37 Aligned_cols=87 Identities=15% Similarity=0.320 Sum_probs=54.5
Q ss_pred ceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeE---EEecCCc-Ccc-cce--ecccc-ceeeccCCCccccccc
Q 003087 162 NVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISL---WRRCHNL-ELE-QLY--TTQIE-GLYCEPKGHEVQLAHP 233 (849)
Q Consensus 162 ~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~l---W~~~~~~-~~~-~l~--~~~~~-~~~~~~~g~~h~~~V~ 233 (849)
.|..|..||+|++||.+|..+ -+.+.+ |-.++.. ++. .+. +.... .++.. + +...|.
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~-----------v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~--~--~~~~i~ 150 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRG-----------VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTS--N--SSLEIK 150 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCc-----------EEEEEeccccCccccccCCCcceeEEEEEechhhccC--C--CCceEE
Confidence 499999999999999998775 122333 3212110 011 111 11111 12211 1 346889
Q ss_pred eEEEccC---CCEEEEEeCCCcEEEEecCCCcc
Q 003087 234 KVLISPQ---GKFVATSDTNGCLYIFEMDKDNF 263 (849)
Q Consensus 234 ~vafSPD---G~~LAs~s~Dgtv~LWd~~~~~~ 263 (849)
.+.|.|. |..|+....|+++|++|+...+.
T Consensus 151 qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~ 183 (717)
T PF10168_consen 151 QVRWHPWSESDSHLVVLTSDNTLRLYDISDPQH 183 (717)
T ss_pred EEEEcCCCCCCCeEEEEecCCEEEEEecCCCCC
Confidence 9999997 48999999999999999986543
No 409
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=73.65 E-value=36 Score=41.12 Aligned_cols=67 Identities=12% Similarity=0.079 Sum_probs=44.3
Q ss_pred ceEEEEEcCCCCeEEEEeC-CeEEEEecCCCCCcceeeee--ecCCCCEEEEEEC--CCCCEEEEEeCCCcEEEEe
Q 003087 12 KQVSLFISPRGERVAVAAV-NQVTILQKDDDYQEPCGIFN--CTGLGASIYGAWS--ESHDVLGIVDDTHTVYFFK 82 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas~-~~i~iw~~~~~~~~~~~~~~--~~~~~~v~~vafS--PDG~~LAs~~~dgtIrlWd 82 (849)
...-+.-|.-|+.-.+-++ .+++|||..... ..+. ....+.|..+.|. |||+.+.+.+-.+.|.|+.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~----lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGV----LEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcE----EEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence 3445666775554444444 589999976431 1121 1235678888885 8999999999999998874
No 410
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.19 E-value=9 Score=48.02 Aligned_cols=52 Identities=12% Similarity=0.091 Sum_probs=39.9
Q ss_pred CEEEEEECCCCCEEEEEeCCCcEEEEecCCccceecccccccccccEEEEEe
Q 003087 56 ASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIA 107 (849)
Q Consensus 56 ~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~f 107 (849)
..++|+|||-|+.|+.|...||+.-+...++....+.+....-...|.+|.|
T Consensus 200 ~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~W 251 (1405)
T KOG3630|consen 200 SQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTW 251 (1405)
T ss_pred ceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEE
Confidence 4689999999999999999999999998888666665543222345666655
No 411
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.65 E-value=8.6 Score=41.29 Aligned_cols=61 Identities=16% Similarity=0.351 Sum_probs=39.8
Q ss_pred EcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEE
Q 003087 168 YHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATS 247 (849)
Q Consensus 168 fsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~ 247 (849)
|||||++|...-+|-. ++.| +|-++|...+ ++.+ |-|+. |.-+-..|.+.+||++||.+
T Consensus 121 fs~dG~~LYATEndfd------~~rG--ViGvYd~r~~--fqrv------gE~~t-----~GiGpHev~lm~DGrtlvva 179 (366)
T COG3490 121 FSPDGRLLYATENDFD------PNRG--VIGVYDAREG--FQRV------GEFST-----HGIGPHEVTLMADGRTLVVA 179 (366)
T ss_pred cCCCCcEEEeecCCCC------CCCc--eEEEEecccc--ccee------ccccc-----CCcCcceeEEecCCcEEEEe
Confidence 9999999986544421 2334 5889988754 2222 22222 33455589999999999986
Q ss_pred eC
Q 003087 248 DT 249 (849)
Q Consensus 248 s~ 249 (849)
..
T Consensus 180 nG 181 (366)
T COG3490 180 NG 181 (366)
T ss_pred CC
Confidence 43
No 412
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=72.52 E-value=6.5 Score=28.66 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=14.5
Q ss_pred ceEEEEEcCCCCeEEEEe
Q 003087 12 KQVSLFISPRGERVAVAA 29 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas 29 (849)
.-...+|||||++|+-++
T Consensus 10 ~~~~p~~SpDGk~i~f~s 27 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTS 27 (39)
T ss_dssp SEEEEEE-TTSSEEEEEE
T ss_pred cccCEEEecCCCEEEEEe
Confidence 457889999999999886
No 413
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=72.44 E-value=42 Score=35.73 Aligned_cols=79 Identities=14% Similarity=0.169 Sum_probs=46.8
Q ss_pred ceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCC
Q 003087 162 NVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQG 241 (849)
Q Consensus 162 ~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG 241 (849)
+..+=+|-|||++|.+||..+ |...+++++.............. ..+. ...+-.++..=|||
T Consensus 68 FCSgg~~L~dG~ll~tGG~~~----------G~~~ir~~~p~~~~~~~~w~e~~--~~m~------~~RWYpT~~~L~DG 129 (243)
T PF07250_consen 68 FCSGGAFLPDGRLLQTGGDND----------GNKAIRIFTPCTSDGTCDWTESP--NDMQ------SGRWYPTATTLPDG 129 (243)
T ss_pred cccCcCCCCCCCEEEeCCCCc----------cccceEEEecCCCCCCCCceECc--cccc------CCCccccceECCCC
Confidence 455567999999998887653 43457877765411000111000 0010 23477788888999
Q ss_pred CEEEEEeCCC-cEEEEec
Q 003087 242 KFVATSDTNG-CLYIFEM 258 (849)
Q Consensus 242 ~~LAs~s~Dg-tv~LWd~ 258 (849)
+.|+.+|.+. +...|.-
T Consensus 130 ~vlIvGG~~~~t~E~~P~ 147 (243)
T PF07250_consen 130 RVLIVGGSNNPTYEFWPP 147 (243)
T ss_pred CEEEEeCcCCCcccccCC
Confidence 9999998874 3444543
No 414
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=71.89 E-value=2 Score=52.18 Aligned_cols=22 Identities=5% Similarity=0.126 Sum_probs=18.4
Q ss_pred EcCCCceEEEEecCCCCccccC
Q 003087 168 YHPELSLLSVVSNTDTSSLTSS 189 (849)
Q Consensus 168 fsPdg~lLas~g~d~t~~~~~~ 189 (849)
.||||..+|.+..||-++.|++
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred eCCCCcEEEEeecCCccceeee
Confidence 7999999999999987666644
No 415
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.94 E-value=35 Score=36.87 Aligned_cols=108 Identities=12% Similarity=0.227 Sum_probs=59.5
Q ss_pred EEEEEcCCCceE-EEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCC
Q 003087 164 ICTDYHPELSLL-SVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGK 242 (849)
Q Consensus 164 ~svafsPdg~lL-as~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~ 242 (849)
-.++|||-...- +.+=.- |+ .-.++|.++....+.+.+. ....| -| | =.|||||.
T Consensus 71 Hgi~~~p~~~ravafARrP-----------Gt-f~~vfD~~~~~~pv~~~s~-~~RHf---yG--H------Gvfs~dG~ 126 (366)
T COG3490 71 HGIAFHPALPRAVAFARRP-----------GT-FAMVFDPNGAQEPVTLVSQ-EGRHF---YG--H------GVFSPDGR 126 (366)
T ss_pred CCeecCCCCcceEEEEecC-----------Cc-eEEEECCCCCcCcEEEecc-cCcee---ec--c------cccCCCCc
Confidence 346888876543 333233 32 2456777765443333322 11111 12 3 35899999
Q ss_pred EEEEEeCC-----CcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEE
Q 003087 243 FVATSDTN-----GCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIIT 314 (849)
Q Consensus 243 ~LAs~s~D-----gtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~ 314 (849)
+|...-.| |.|-|+|.... .+... +++ .+.-+..++.|.+||++++.. +|.|.
T Consensus 127 ~LYATEndfd~~rGViGvYd~r~~---fqrvg-----------E~~----t~GiGpHev~lm~DGrtlvva-nGGIe 184 (366)
T COG3490 127 LLYATENDFDPNRGVIGVYDAREG---FQRVG-----------EFS----THGIGPHEVTLMADGRTLVVA-NGGIE 184 (366)
T ss_pred EEEeecCCCCCCCceEEEEecccc---cceec-----------ccc----cCCcCcceeEEecCCcEEEEe-CCcee
Confidence 99876443 78889998743 12221 111 233456889999999854432 44333
No 416
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=69.19 E-value=20 Score=37.46 Aligned_cols=80 Identities=15% Similarity=0.208 Sum_probs=52.2
Q ss_pred EEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCC---CCCCCCCcEEEEEecCCEEEEEEeCC
Q 003087 235 VLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDG---RTKPISDITDFAWWSDNILILARKSS 311 (849)
Q Consensus 235 vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~---~~~~~~~v~~vaws~D~~la~a~~dg 311 (849)
+.+..+|++|.+...+|.+++||+.+.+..+..... .+ .+.+. .......|.++....+|..++.-.+|
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si-----~p---ll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng 87 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSI-----AP---LLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNG 87 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccH-----HH---HhcccccccCCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 446679999999999999999999987542222111 11 12110 00123457777777888766666788
Q ss_pred cEEEEEecCCc
Q 003087 312 IITMIDVLSGL 322 (849)
Q Consensus 312 ti~lwdl~~~~ 322 (849)
....|+..-+.
T Consensus 88 ~~y~y~~~L~~ 98 (219)
T PF07569_consen 88 DSYSYSPDLGC 98 (219)
T ss_pred CEEEeccccce
Confidence 88888866543
No 417
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=68.51 E-value=30 Score=39.83 Aligned_cols=39 Identities=13% Similarity=0.068 Sum_probs=32.1
Q ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEecCCccceeccc
Q 003087 55 GASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRFTN 93 (849)
Q Consensus 55 ~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~~~l~~ 93 (849)
-.+.+|+.||+|++.|+.++=|.|-|+|+....+.++-+
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK 346 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK 346 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc
Confidence 346899999999999999999999999998655555544
No 418
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.41 E-value=71 Score=37.36 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=45.1
Q ss_pred eEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcE
Q 003087 234 KVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSII 313 (849)
Q Consensus 234 ~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti 313 (849)
+.+=.-+| ++|.||.+|.|||+|.-+ +..-.-+|. ....|.-|.-+.||.-++|.++..+
T Consensus 435 c~aTT~sG-~IvvgS~~GdIRLYdri~-~~AKTAlPg------------------LG~~I~hVdvtadGKwil~Tc~tyL 494 (644)
T KOG2395|consen 435 CFATTESG-YIVVGSLKGDIRLYDRIG-RRAKTALPG------------------LGDAIKHVDVTADGKWILATCKTYL 494 (644)
T ss_pred eeeecCCc-eEEEeecCCcEEeehhhh-hhhhhcccc------------------cCCceeeEEeeccCcEEEEecccEE
Confidence 34433444 577799999999999843 221112221 2234666666689999999999999
Q ss_pred EEEEecC
Q 003087 314 TMIDVLS 320 (849)
Q Consensus 314 ~lwdl~~ 320 (849)
.+.++.-
T Consensus 495 lLi~t~~ 501 (644)
T KOG2395|consen 495 LLIDTLI 501 (644)
T ss_pred EEEEEec
Confidence 9988764
No 419
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=66.82 E-value=31 Score=38.07 Aligned_cols=82 Identities=18% Similarity=0.109 Sum_probs=44.2
Q ss_pred cceEEEEEcCCCCeEEEEe--CCeEEEEecCCCCCcceee--ee-e-cCCCCEEEEEECCCCCEEEEEeCCC-cEEEEec
Q 003087 11 KKQVSLFISPRGERVAVAA--VNQVTILQKDDDYQEPCGI--FN-C-TGLGASIYGAWSESHDVLGIVDDTH-TVYFFKA 83 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas--~~~i~iw~~~~~~~~~~~~--~~-~-~~~~~v~~vafSPDG~~LAs~~~dg-tIrlWd~ 83 (849)
..-+.|+|||||++|-.+- .+.|..++.+...+...+. +. . .+.+.--.++.=.||.+-+++...| .|..|+.
T Consensus 163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~p 242 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNP 242 (307)
T ss_pred EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECC
Confidence 3457899999999887773 2566555544211111111 11 0 0011122344455666665555544 7778888
Q ss_pred CCccceecc
Q 003087 84 NGEEITRFT 92 (849)
Q Consensus 84 ~g~~~~~l~ 92 (849)
+|+++..+.
T Consensus 243 dG~l~~~i~ 251 (307)
T COG3386 243 DGKLLGEIK 251 (307)
T ss_pred CCcEEEEEE
Confidence 877665553
No 420
>PRK13615 lipoprotein LpqB; Provisional
Probab=62.79 E-value=3.4e+02 Score=32.66 Aligned_cols=29 Identities=3% Similarity=-0.094 Sum_probs=24.3
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEecCCc
Q 003087 58 IYGAWSESHDVLGIVDDTHTVYFFKANGE 86 (849)
Q Consensus 58 ~~vafSPDG~~LAs~~~dgtIrlWd~~g~ 86 (849)
.+++.|+||+.+|..+.++.++++...|.
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~~ 365 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGDRD 365 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCCCc
Confidence 68899999999999988888888765533
No 421
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=62.48 E-value=2.5e+02 Score=30.99 Aligned_cols=83 Identities=11% Similarity=0.010 Sum_probs=54.4
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEecC-----Ccc---ceeccccccc-ccccEEEEEecCCccc--cc---ccceeEEE
Q 003087 58 IYGAWSESHDVLGIVDDTHTVYFFKAN-----GEE---ITRFTNKHLK-VSLPIIGLIAQDETDV--QR---SCLCSFTV 123 (849)
Q Consensus 58 ~~vafSPDG~~LAs~~~dgtIrlWd~~-----g~~---~~~l~~~~~~-~~~~V~~l~fs~~~~~--~~---s~~~~~~~ 123 (849)
+.|+|||.|.+-++....++..|+|.+ |.. ..+++..... -.....+++|+..... .. +....|+.
T Consensus 26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif 105 (336)
T TIGR03118 26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLF 105 (336)
T ss_pred ceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEE
Confidence 579999999999999999999999987 322 3333321110 1134678888752211 11 11124788
Q ss_pred EeCCCcEEEEEecCCCC
Q 003087 124 FTSDGFLHQIEISQDPS 140 (849)
Q Consensus 124 ~s~Dg~v~lw~~~~~~~ 140 (849)
++.||+|.-|....+..
T Consensus 106 ~tEdGTisaW~p~v~~t 122 (336)
T TIGR03118 106 VTEDGTLSGWAPALGTT 122 (336)
T ss_pred EeCCceEEeecCcCCcc
Confidence 89999999999655444
No 422
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.72 E-value=1.2e+02 Score=39.21 Aligned_cols=169 Identities=11% Similarity=0.196 Sum_probs=83.8
Q ss_pred CCCcEEEEecC-CccceecccccccccccEEEEEe-cC-CcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccC
Q 003087 74 DTHTVYFFKAN-GEEITRFTNKHLKVSLPIIGLIA-QD-ETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASS 150 (849)
Q Consensus 74 ~dgtIrlWd~~-g~~~~~l~~~~~~~~~~V~~l~f-s~-~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~ 150 (849)
-|..+.+|+.+ |.++..+.+ .+.+|..|.. -| .+... +...++.++..--.|-++-++-+....... .+ .
T Consensus 97 iDn~L~lWny~~~~e~~~~d~----~shtIl~V~LvkPkpgvFv-~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~-~f-~ 169 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDG----LSHTILKVGLVKPKPGVFV-PEIQHLLVVATPVEIVILGVSFDEFTGELS-IF-N 169 (1311)
T ss_pred eCCeEEEEEcCCCCccccccc----hhhhheeeeeecCCCCcch-hhhheeEEecccceEEEEEEEeccccCccc-cc-c
Confidence 45679999986 455544432 2345666554 33 22111 111234443333444444443222110000 00 1
Q ss_pred CcceeccccCCceEEEEEcCCCceEEEEecCCCCccccC---CCCCCceeeEEEec--CCcCccc-ceeccccceeeccC
Q 003087 151 SGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSS---GNSGPCCISLWRRC--HNLELEQ-LYTTQIEGLYCEPK 224 (849)
Q Consensus 151 ~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~---~~~G~~~I~lW~~~--~~~~~~~-l~~~~~~~~~~~~~ 224 (849)
..+++... +..|+++++..+|+.+. +|.|+ .+|.. ..+| |--. ...++.. +.+.-...+++.+.
T Consensus 170 ~~~~i~~d-g~~V~~I~~t~nGRIF~-~G~dg--~lyEl~Yq~~~g------Wf~~rc~Kiclt~s~ls~lvPs~~~~~~ 239 (1311)
T KOG1900|consen 170 TSFKISVD-GVSVNCITYTENGRIFF-AGRDG--NLYELVYQAEDG------WFGSRCRKICLTKSVLSSLVPSLLSVPG 239 (1311)
T ss_pred cceeeecC-CceEEEEEeccCCcEEE-eecCC--CEEEEEEeccCc------hhhcccccccCchhHHHHhhhhhhcCCC
Confidence 11223221 23599999999999886 45665 23321 0111 1100 0001100 00000011222232
Q ss_pred CCccccccceEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003087 225 GHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKD 261 (849)
Q Consensus 225 g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~ 261 (849)
+ +.++|..+++--.-++|.+.+.-|+|+.|++.+.
T Consensus 240 ~--~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 240 S--SKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred C--CCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence 4 7789999999766778999999999999999874
No 423
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.24 E-value=53 Score=38.27 Aligned_cols=80 Identities=14% Similarity=0.215 Sum_probs=51.2
Q ss_pred ceEEEEEcCCCCeEEEEeCCeEEE------EecCCC--CCcceeeee----------ecCCCCEEEEEECCCC---CEEE
Q 003087 12 KQVSLFISPRGERVAVAAVNQVTI------LQKDDD--YQEPCGIFN----------CTGLGASIYGAWSESH---DVLG 70 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas~~~i~i------w~~~~~--~~~~~~~~~----------~~~~~~v~~vafSPDG---~~LA 70 (849)
.|..|..||.|..+|-++-+.|-| |-.... .+++.-+|. ...+-.+..++|.|+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 477899999999999876443433 322111 122332332 0112245689999997 7888
Q ss_pred EEeCCCcEEEEecC-Cccceec
Q 003087 71 IVDDTHTVYFFKAN-GEEITRF 91 (849)
Q Consensus 71 s~~~dgtIrlWd~~-g~~~~~l 91 (849)
.-.+|.+|||+|.. -.+++..
T Consensus 185 iL~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred EEecCcEEEEEecCCcchhhcc
Confidence 89999999999986 3444433
No 424
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=61.14 E-value=21 Score=37.26 Aligned_cols=17 Identities=29% Similarity=0.247 Sum_probs=14.6
Q ss_pred eEEEEeCCCcEEEEEec
Q 003087 120 SFTVFTSDGFLHQIEIS 136 (849)
Q Consensus 120 ~~~~~s~Dg~v~lw~~~ 136 (849)
.+++++.+|.|.+|+..
T Consensus 72 ~~~vG~~dg~v~~~n~n 88 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWN 88 (238)
T ss_pred eEEeecccceEEEecCC
Confidence 57888999999999875
No 425
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=60.91 E-value=2.7e+02 Score=32.70 Aligned_cols=26 Identities=12% Similarity=0.106 Sum_probs=20.0
Q ss_pred CEEEEEeCCCcEEEEecC-Cccceecc
Q 003087 67 DVLGIVDDTHTVYFFKAN-GEEITRFT 92 (849)
Q Consensus 67 ~~LAs~~~dgtIrlWd~~-g~~~~~l~ 92 (849)
..+..++.+|.|+-+|.. |+.+.+..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFG 137 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeec
Confidence 567778889999999985 87766553
No 426
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=60.38 E-value=1.4e+02 Score=31.42 Aligned_cols=151 Identities=12% Similarity=0.030 Sum_probs=61.7
Q ss_pred ceEEEEEcCCCCeEEEEeCCeEEE-EecCCCCCcc-eeeeeecC-CCCEEEEEECCCCCEEEEEeCCCcEEEEecCCccc
Q 003087 12 KQVSLFISPRGERVAVAAVNQVTI-LQKDDDYQEP-CGIFNCTG-LGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEI 88 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas~~~i~i-w~~~~~~~~~-~~~~~~~~-~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g~~~ 88 (849)
....|+++|+|++-|+-.++--+- +-.....+.. ..+-..++ ......|.+.|.|-+-|+.. ||+++=|.......
T Consensus 35 ~~~~i~~~P~g~lY~I~~~~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~~i~~d~~G~LYaV~~-~G~lyR~~~~~~~~ 113 (229)
T PF14517_consen 35 NFRDIAAGPNGRLYAIRNDGLYRGSPSSSGGNTWDSGSKQIGDGGWNSFKFIFFDPTGVLYAVTP-DGKLYRHPRPTNGS 113 (229)
T ss_dssp T-SEEEE-TTS-EEEEETTEEEEES---STT--HHHH-EEEE-S-GGG-SEEEE-TTS-EEEEET-T-EEEEES---STT
T ss_pred ccceEEEcCCceEEEEECCceEEecCCccCcccccccCcccccCcccceeEEEecCCccEEEecc-ccceeeccCCCccC
Confidence 456799999999998876531111 0000000000 00111222 44677999999999887776 78886665432211
Q ss_pred eeccc---ccc-ccc-ccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccC-Cc
Q 003087 89 TRFTN---KHL-KVS-LPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFP-QN 162 (849)
Q Consensus 89 ~~l~~---~~~-~~~-~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 162 (849)
..... ..+ .-. .....|.|-+++ .|+.++.||.+.-+.-..+....... .+ .+.++.. ..
T Consensus 114 ~~W~~~~~~~iG~~GW~~f~~vfa~~~G--------vLY~i~~dg~~~~~~~p~~~~~~W~~----~s--~~v~~~gw~~ 179 (229)
T PF14517_consen 114 DNWIGGSGKKIGGTGWNDFDAVFAGPNG--------VLYAITPDGRLYRRYRPDGGSDRWLS----GS--GLVGGGGWDS 179 (229)
T ss_dssp --HHH-HSEEEE-SSGGGEEEEEE-TTS---------EEEEETTE-EEEE---SSTT--HHH----H---EEEESSSGGG
T ss_pred cchhhccceecccCCCccceEEEeCCCc--------cEEEEcCCCceEEeCCCCCCCCcccc----cc--ceeccCCccc
Confidence 22211 000 000 113344444443 26666888855444322222222211 00 1111111 12
Q ss_pred eEEEEEcCCCceEEE
Q 003087 163 VICTDYHPELSLLSV 177 (849)
Q Consensus 163 V~svafsPdg~lLas 177 (849)
-..|.|+|+|.+.++
T Consensus 180 ~~~i~~~~~g~L~~V 194 (229)
T PF14517_consen 180 FHFIFFSPDGNLWAV 194 (229)
T ss_dssp EEEEEE-TTS-EEEE
T ss_pred ceEEeeCCCCcEEEE
Confidence 567889999999987
No 427
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=59.91 E-value=2.1e+02 Score=35.32 Aligned_cols=31 Identities=16% Similarity=0.382 Sum_probs=26.5
Q ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEEecC
Q 003087 54 LGASIYGAWSESHDVLGIVDDTHTVYFFKAN 84 (849)
Q Consensus 54 ~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~ 84 (849)
..+|....||.|-+.++..-.+.+|-+.+..
T Consensus 112 ~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~ 142 (1243)
T COG5290 112 SNGIVAASWSADEKTWCVVTSTREILLFDKY 142 (1243)
T ss_pred cCceEEEeeccCCceEEEEEcCceEEEEecc
Confidence 4567888999999999999999999888753
No 428
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=58.52 E-value=2.9e+02 Score=30.50 Aligned_cols=74 Identities=12% Similarity=0.104 Sum_probs=45.8
Q ss_pred cceEEEEEcCCCCeEEEEe-CCeEEEEecCCC-----CCcceeeeee-cC---CCCEEEEEECCCCCEE-----------
Q 003087 11 KKQVSLFISPRGERVAVAA-VNQVTILQKDDD-----YQEPCGIFNC-TG---LGASIYGAWSESHDVL----------- 69 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~~i~iw~~~~~-----~~~~~~~~~~-~~---~~~v~~vafSPDG~~L----------- 69 (849)
..-|-|+|+|.|..-++.. .++.++++...+ .+........ .+ .+..+.++|+.-..+.
T Consensus 23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred cccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 4568999999998776554 478899986521 1111111111 11 3355778887655553
Q ss_pred -EEEeCCCcEEEEecC
Q 003087 70 -GIVDDTHTVYFFKAN 84 (849)
Q Consensus 70 -As~~~dgtIrlWd~~ 84 (849)
.-++.||||.=|...
T Consensus 103 Fif~tEdGTisaW~p~ 118 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPA 118 (336)
T ss_pred EEEEeCCceEEeecCc
Confidence 445788999999853
No 429
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.12 E-value=84 Score=36.79 Aligned_cols=111 Identities=11% Similarity=0.011 Sum_probs=64.1
Q ss_pred eEEEEEcCCCC--------eEEEEeCCeEEEEecCCCCCcceeeeeec---CCCCEEEEEECCCCCEEEEEeCCCcEEEE
Q 003087 13 QVSLFISPRGE--------RVAVAAVNQVTILQKDDDYQEPCGIFNCT---GLGASIYGAWSESHDVLGIVDDTHTVYFF 81 (849)
Q Consensus 13 v~slafSPdG~--------~LAsas~~~i~iw~~~~~~~~~~~~~~~~---~~~~v~~vafSPDG~~LAs~~~dgtIrlW 81 (849)
|.-+.|.||++ +|.--+++.|--||..-+....+.--+.+ ....+.|.+=-.+| ++|+||.+|.|||+
T Consensus 378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLY 456 (644)
T KOG2395|consen 378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLY 456 (644)
T ss_pred cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEee
Confidence 56677888875 22223567787887552211001111111 13456677777666 58999999999999
Q ss_pred ecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEe
Q 003087 82 KANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEI 135 (849)
Q Consensus 82 d~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~ 135 (849)
|..|..-.+..++. ..+|..|..+.++ ..++++-+..+-+.++
T Consensus 457 dri~~~AKTAlPgL---G~~I~hVdvtadG--------Kwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 457 DRIGRRAKTALPGL---GDAIKHVDVTADG--------KWILATCKTYLLLIDT 499 (644)
T ss_pred hhhhhhhhhccccc---CCceeeEEeeccC--------cEEEEecccEEEEEEE
Confidence 98776544444433 3567666643333 2444555666666654
No 430
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=57.63 E-value=62 Score=38.35 Aligned_cols=69 Identities=12% Similarity=0.186 Sum_probs=39.3
Q ss_pred EEcCCCCeEEEEeCCeE-EEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCC-CcEEEEecCCcc
Q 003087 17 FISPRGERVAVAAVNQV-TILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDT-HTVYFFKANGEE 87 (849)
Q Consensus 17 afSPdG~~LAsas~~~i-~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~d-gtIrlWd~~g~~ 87 (849)
.|.|....|++-....+ .+.+..-+... + +...++++.|.+.+|.+||+.|++|-.+ =.-++||-..+.
T Consensus 119 VWHPk~~iL~VLT~~dvSV~~sV~~d~sr-V-kaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKt 189 (671)
T PF15390_consen 119 VWHPKKAILTVLTARDVSVLPSVHCDSSR-V-KADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKT 189 (671)
T ss_pred cccCCCceEEEEecCceeEeeeeeeCCce-E-EEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhh
Confidence 45666666665543222 22232211111 1 1112346789999999999999976543 345688866553
No 431
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=56.44 E-value=39 Score=27.28 Aligned_cols=18 Identities=6% Similarity=0.207 Sum_probs=15.7
Q ss_pred ceEEEEEcCCCCeEEEEe
Q 003087 12 KQVSLFISPRGERVAVAA 29 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas 29 (849)
.++++++-||||.|++|.
T Consensus 2 ~~~~~~~q~DGkIlv~G~ 19 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGY 19 (55)
T ss_pred ceEEEEECCCCcEEEEEE
Confidence 578999999999999885
No 432
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=56.42 E-value=51 Score=32.01 Aligned_cols=85 Identities=19% Similarity=0.169 Sum_probs=59.4
Q ss_pred HHHHHHcccCHHHHHHHHHHhCCChhH--HHHHHH----hcCCCCHHHHHHhhhcCCChHHHHHHHhhccC----CCHHH
Q 003087 393 MYNILISHRNYQTAIDFANYHGLDTDE--VLKSQW----LNSSQGTDEINMFLSKIKDQAFILSECVDKVG----RTEDS 462 (849)
Q Consensus 393 ~~~~~i~~~~~~~A~~lA~~~~ld~d~--Vyk~~w----~~s~~~~~~i~~~L~kI~D~~wV~~~Cl~~~~----~~~~~ 462 (849)
-++-+|++++|.+|+.||-+.+-+.-+ |.+.-- ...+.+.+.|.+.+.+.++.+.+.=-.--|-| -+..+
T Consensus 3 ~L~N~l~~~~y~~Al~LAl~L~~P~~ll~i~~~~~~~~~~~~~~g~~~l~~~i~~L~~~~l~~LL~~ir~WNTNsr~~~v 82 (141)
T PF08625_consen 3 ELSNLLRQKDYKEALRLALKLDHPFRLLKILKDLLETEEDEDSIGSEELDEVIKKLDDEQLEKLLRFIRDWNTNSRTSHV 82 (141)
T ss_pred hHHHHHHhhhHHHHHHHHHhcCCcHHHHHHHHHHHhcccccccchHHHHHHHHHhcCHHHHHHHHHHHHHhhcccccHHH
Confidence 456688999999999999999976654 344333 12223568899999999988776333222333 35888
Q ss_pred HHHHHHHHhhccccC
Q 003087 463 AKALLAHGLHLTNQY 477 (849)
Q Consensus 463 ~~~LL~~gL~~t~~~ 477 (849)
+..+|..=++..+..
T Consensus 83 AQ~vL~~il~~~~~~ 97 (141)
T PF08625_consen 83 AQRVLNAILKSHPPE 97 (141)
T ss_pred HHHHHHHHHHhCCHH
Confidence 888888888766653
No 433
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.46 E-value=39 Score=39.33 Aligned_cols=87 Identities=11% Similarity=0.242 Sum_probs=57.0
Q ss_pred ceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeE---EEecCCc-Cccc-cee--ccc-cceeeccCCCccccccc
Q 003087 162 NVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISL---WRRCHNL-ELEQ-LYT--TQI-EGLYCEPKGHEVQLAHP 233 (849)
Q Consensus 162 ~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~l---W~~~~~~-~~~~-l~~--~~~-~~~~~~~~g~~h~~~V~ 233 (849)
.|..|-.||.|...|-+|.+| -|...+ |-.++-. |..+ +.. ... ..+|... ..-.+.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~G-----------i~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss----~~ltl~ 169 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKG-----------LMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSS----TSLTLK 169 (741)
T ss_pred EEEEEEecCCCceEEEecCCe-----------eEEEEchhhcCccceecCCCceEEEEeecccceeeccC----Cceeee
Confidence 489999999999999988885 345555 6554421 2211 111 000 0122111 124677
Q ss_pred eEEEccCC---CEEEEEeCCCcEEEEecCCCcc
Q 003087 234 KVLISPQG---KFVATSDTNGCLYIFEMDKDNF 263 (849)
Q Consensus 234 ~vafSPDG---~~LAs~s~Dgtv~LWd~~~~~~ 263 (849)
.++|.|++ ..|.....|.++||+++...+.
T Consensus 170 Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 170 QAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred eccccCCccCCceEEEEecCcEEEEEecCCcch
Confidence 89999997 6788899999999999997754
No 434
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=53.23 E-value=3.5e+02 Score=33.87 Aligned_cols=162 Identities=17% Similarity=0.221 Sum_probs=0.0
Q ss_pred ccCCceEEEEEc-------CCCceEEEEecCCCCccccCCCCCCceeeEEE------ecCCcCcccceeccccceeeccC
Q 003087 158 QFPQNVICTDYH-------PELSLLSVVSNTDTSSLTSSGNSGPCCISLWR------RCHNLELEQLYTTQIEGLYCEPK 224 (849)
Q Consensus 158 ~~~~~V~svafs-------Pdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~------~~~~~~~~~l~~~~~~~~~~~~~ 224 (849)
....+|..|.|+ +..++|++=-... +.+.+ .........-........+....
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~s--------------t~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~ 142 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETS--------------TTILRPEYHRVISSIRSRPSRIDPNPLLTISSSD 142 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCE--------------EEEEEcccccccccccCCccccccceeEEechhh
Q ss_pred CCccccccceEEEcc-CCCEEEEEeCCCcEEEEec-CCCccccccccccccccccc-ccccCCCCCCCCCCcEEEEEecC
Q 003087 225 GHEVQLAHPKVLISP-QGKFVATSDTNGCLYIFEM-DKDNFSLSKFACGERFDLQV-ADSLFDGRTKPISDITDFAWWSD 301 (849)
Q Consensus 225 g~~h~~~V~~vafSP-DG~~LAs~s~Dgtv~LWd~-~~~~~~l~~~~~~~~~~~~~-~~~l~~~~~~~~~~v~~vaws~D 301 (849)
- ...+.-.|+|.| +.+.+|..+..|.-.+|++ ...+.....+.......-.+ ++ .+....-..|.|.++
T Consensus 143 t--gg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d------~~e~s~w~rI~W~~~ 214 (765)
T PF10214_consen 143 T--GGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFD------PEELSNWKRILWVSD 214 (765)
T ss_pred c--CCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCC------CcccCcceeeEecCC
Q ss_pred CEEEEEEeCCcEEEEEecCCcc---cc-----------ccCCCCCCeEEEEEec
Q 003087 302 NILILARKSSIITMIDVLSGLK---VK-----------ETDPKLRGHVFLLESK 341 (849)
Q Consensus 302 ~~la~a~~dgti~lwdl~~~~~---l~-----------~~~~~~~g~~~~Le~~ 341 (849)
..-++......+.+.|+.+... +. ..+|...+.+|+|.++
T Consensus 215 ~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~ 268 (765)
T PF10214_consen 215 SNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSK 268 (765)
T ss_pred CCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecC
No 435
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=52.97 E-value=4.4e+02 Score=30.95 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=23.0
Q ss_pred CCCEEEEEeCCCcEEEEecCCCccccccc
Q 003087 240 QGKFVATSDTNGCLYIFEMDKDNFSLSKF 268 (849)
Q Consensus 240 DG~~LAs~s~Dgtv~LWd~~~~~~~l~~~ 268 (849)
.|..|..++.||.|+-+|..+++. ++.+
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG~~-lW~~ 432 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTGKE-LWKF 432 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCCce-eeEE
Confidence 678888899999999999999865 4444
No 436
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=52.55 E-value=44 Score=41.32 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=23.5
Q ss_pred EECCCCCEEEEEeCCCcEEEEec--CCcc
Q 003087 61 AWSESHDVLGIVDDTHTVYFFKA--NGEE 87 (849)
Q Consensus 61 afSPDG~~LAs~~~dgtIrlWd~--~g~~ 87 (849)
..||||+.+|.+..||.|++|.. .|+.
T Consensus 242 ~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~ 270 (1283)
T KOG1916|consen 242 SLSPDGTVFAWAISDGSVGFYQIYITGKI 270 (1283)
T ss_pred eeCCCCcEEEEeecCCccceeeeeeeccc
Confidence 47999999999999999999975 4653
No 437
>PRK10115 protease 2; Provisional
Probab=50.95 E-value=5.7e+02 Score=31.62 Aligned_cols=30 Identities=10% Similarity=0.063 Sum_probs=22.5
Q ss_pred CEEEEEECCCCCEEEEEeCC-----CcEEEEecCC
Q 003087 56 ASIYGAWSESHDVLGIVDDT-----HTVYFFKANG 85 (849)
Q Consensus 56 ~v~~vafSPDG~~LAs~~~d-----gtIrlWd~~g 85 (849)
.+..+.|||||++||.+.+. -+|++-|+.+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~t 162 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLET 162 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCC
Confidence 35678999999999976443 3588888863
No 438
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=46.77 E-value=48 Score=37.86 Aligned_cols=146 Identities=14% Similarity=0.103 Sum_probs=77.8
Q ss_pred cceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeee--cC--CCCEE-EEEECCCCCEEEEEeCCCcEEEE-ecC
Q 003087 11 KKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNC--TG--LGASI-YGAWSESHDVLGIVDDTHTVYFF-KAN 84 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~--~~--~~~v~-~vafSPDG~~LAs~~~dgtIrlW-d~~ 84 (849)
..|..+-..|||++|-+-+++++.+.+.+... -...++.. .+ ...|+ ++..-..|.-|.+++.||-|.-| |+.
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~-l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr 299 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTGSELVVALLDKRS-LQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVR 299 (733)
T ss_pred cchHhhEECCCCCEEEEecCCeEEEEeecccc-cchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeee
Confidence 34667888999999988877888777765321 11111111 01 11222 22223356778889999999888 543
Q ss_pred -CccceecccccccccccEEEEEe-cCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCc
Q 003087 85 -GEEITRFTNKHLKVSLPIIGLIA-QDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQN 162 (849)
Q Consensus 85 -g~~~~~l~~~~~~~~~~V~~l~f-s~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 162 (849)
+.. .++ .|...++..=..+.| .|+.. ...|++...+|++.++.-...+.. .++ .-+ .+
T Consensus 300 ~~~~-p~l-~h~R~f~l~pa~~~~l~pe~~-----rkgF~~l~~~G~L~~f~st~~~~l-L~~-----------~~~-~~ 359 (733)
T COG4590 300 RDGQ-PHL-NHIRNFKLAPAEVQFLLPETN-----RKGFYSLYRNGTLQSFYSTSEKLL-LFE-----------RAY-QA 359 (733)
T ss_pred cCCC-Ccc-eeeeccccCcccceeeccccc-----cceEEEEcCCCceeeeecccCcce-ehh-----------hhh-cC
Confidence 221 111 010001000011112 12111 124888899999988875433321 111 011 25
Q ss_pred eEEEEEcCCCceEEE
Q 003087 163 VICTDYHPELSLLSV 177 (849)
Q Consensus 163 V~svafsPdg~lLas 177 (849)
+.-+++||.+..|++
T Consensus 360 ~~~~~~Sp~~~~Ll~ 374 (733)
T COG4590 360 PQLVAMSPNQAYLLS 374 (733)
T ss_pred cceeeeCcccchhee
Confidence 777999999999975
No 439
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=46.33 E-value=2.6e+02 Score=32.06 Aligned_cols=28 Identities=11% Similarity=-0.158 Sum_probs=22.6
Q ss_pred CEEEEEECCCCCEEEEEeCCCcEEEEec
Q 003087 56 ASIYGAWSESHDVLGIVDDTHTVYFFKA 83 (849)
Q Consensus 56 ~v~~vafSPDG~~LAs~~~dgtIrlWd~ 83 (849)
.-+.+++=|||.++++....|.++++--
T Consensus 68 ~p~~~~~lP~G~~~v~er~~G~l~~i~~ 95 (399)
T COG2133 68 HPWGLARLPDGVLLVTERPTGRLRLISD 95 (399)
T ss_pred CchhheecCCceEEEEccCCccEEEecC
Confidence 4467899999988888877788988863
No 440
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=45.63 E-value=3.3e+02 Score=33.21 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=37.0
Q ss_pred cceEEEEEcCCCCeEEEEe-CC--eEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEE
Q 003087 11 KKQVSLFISPRGERVAVAA-VN--QVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIV 72 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas-~~--~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~ 72 (849)
+.+.++.|||||+.+|..+ ++ ...+|....+ + ... .....+....|||+|+.++..
T Consensus 60 ~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~-g----~~~-~~~~~v~~~~~~~~g~~~~~~ 118 (620)
T COG1506 60 GGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVG-G----LIT-KTAFGVSDARWSPDGDRIAFL 118 (620)
T ss_pred CcccccccCCCCCEEEEEeccCCCcceEEEEecC-C----cee-eeecccccceeCCCCCeEEEE
Confidence 4567888999999999887 33 2345543221 1 111 113456788999999999983
No 441
>PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting. The molecular function of this region is unknown. Proteins containing this domain also contain a C-terminal ring finger domain.
Probab=45.20 E-value=84 Score=30.73 Aligned_cols=104 Identities=15% Similarity=0.190 Sum_probs=62.6
Q ss_pred cEEEEEecCCEEEEEEeCCcEEEEEecCCccccccC-CCCCCeEEEEEecccccccCCCCcccccccccchhhhhhhhhc
Q 003087 293 ITDFAWWSDNILILARKSSIITMIDVLSGLKVKETD-PKLRGHVFLLESKSVEERFNVSNYDRETVYSNHTVQLIEERFN 371 (849)
Q Consensus 293 v~~vaws~D~~la~a~~dgti~lwdl~~~~~l~~~~-~~~~g~~~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (849)
+.+++-.+=+ +++-. .+.|.+.+.-+++.+++.. ..-.|++..+...... ..+|.
T Consensus 36 p~si~lT~~H-~llL~-~~~l~~vn~L~~~vV~e~~~~~~~~~~~gl~~D~~~-------------~t~W~--------- 91 (147)
T PF05131_consen 36 PLSIALTEFH-LLLLY-SDRLIAVNRLNNKVVFEESLLETGGKILGLCRDPSS-------------NTFWL--------- 91 (147)
T ss_pred cceEEeecee-eeEEe-CCEEEEEEecCCcEEEEEEeccCCcceeeEEEcCCC-------------CeEEE---------
Confidence 4555543323 32322 3568888888888777532 2335666665553311 12331
Q ss_pred cccceeeEEEEEEeccCCHHHHHHHHHcccCHHHHHHHHHHhCCChhHHHHHH
Q 003087 372 RSGNTMLYWSLISFSERSVPEMYNILISHRNYQTAIDFANYHGLDTDEVLKSQ 424 (849)
Q Consensus 372 ~~~~~~~~~~l~~~~~~tp~e~~~~~i~~~~~~~A~~lA~~~~ld~d~Vyk~~ 424 (849)
...+..|.++--.| -..+....+++++|++|+++|+....-.|.|+..|
T Consensus 92 --ys~~~I~ei~i~~E--~r~vWk~yl~~~~fd~Al~~~~~~~~~~d~V~~~q 140 (147)
T PF05131_consen 92 --YSSNSIFEIVINNE--DRDVWKIYLDKGDFDEALQYCKTNPAQRDQVLIKQ 140 (147)
T ss_pred --EeCCeeEEEEcCcc--hHHHHHHHHhcCcHHHHHHHccCCHHHHHHHHHHH
Confidence 12223555554433 35677788999999999999999877788887665
No 442
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=44.21 E-value=2.4e+02 Score=36.83 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=19.1
Q ss_pred cccccceEEEccCCCEEEEEeCCCcEEEE
Q 003087 228 VQLAHPKVLISPQGKFVATSDTNGCLYIF 256 (849)
Q Consensus 228 h~~~V~~vafSPDG~~LAs~s~Dgtv~LW 256 (849)
|-+...+++.||||..... ..|.++|=
T Consensus 660 ~lnsp~alaVsPdg~v~IA--D~gN~rIr 686 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIA--DSGNSRIR 686 (1899)
T ss_pred ccCCcceEEECCCCcEEEe--cCCchhhh
Confidence 5678889999999998764 23444443
No 443
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=43.89 E-value=62 Score=38.59 Aligned_cols=33 Identities=15% Similarity=0.094 Sum_probs=25.5
Q ss_pred CEEEEEECC----CCCEEEEEeCCCcEEEEecCCccc
Q 003087 56 ASIYGAWSE----SHDVLGIVDDTHTVYFFKANGEEI 88 (849)
Q Consensus 56 ~v~~vafSP----DG~~LAs~~~dgtIrlWd~~g~~~ 88 (849)
...+++.++ +.++|++.+.|+++|+||+.++.+
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 456788888 889999999999999999985443
No 444
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=42.29 E-value=7.9e+02 Score=30.79 Aligned_cols=76 Identities=13% Similarity=0.058 Sum_probs=47.7
Q ss_pred CceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCC-----c-----CcccceeccccceeeccCCCcccc
Q 003087 161 QNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHN-----L-----ELEQLYTTQIEGLYCEPKGHEVQL 230 (849)
Q Consensus 161 ~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~-----~-----~~~~l~~~~~~~~~~~~~g~~h~~ 230 (849)
..|.+|....-|..++.+-.||+ |.+.|..+- . +...+.+....|+- -+ +..
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGs-------------I~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~-fp----~~~ 321 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGS-------------IEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFH-FP----CIQ 321 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCe-------------EEEEecCcchhhcccccccCCccccccccccccc-cc----cCC
Confidence 45889999998999988888864 666665442 1 00111111101110 01 112
Q ss_pred ccceEEEccCCCEEEEEeCCCcEE
Q 003087 231 AHPKVLISPQGKFVATSDTNGCLY 254 (849)
Q Consensus 231 ~V~~vafSPDG~~LAs~s~Dgtv~ 254 (849)
.+--|+|||.+.-++..+.+|.+.
T Consensus 322 ~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 322 PPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred CCceEEECcccceEEEEecCCCce
Confidence 445699999999999999999977
No 445
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=41.76 E-value=82 Score=32.77 Aligned_cols=60 Identities=13% Similarity=0.161 Sum_probs=40.6
Q ss_pred EEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCC
Q 003087 15 SLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTH 76 (849)
Q Consensus 15 slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dg 76 (849)
.+.-++.+.+++++++..|..|++.....++...|. --+.|..+++|+-|++|++-..+.
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~--Tv~~V~~l~y~~~GDYlvTlE~k~ 81 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFS--TVGRVLQLVYSEAGDYLVTLEEKN 81 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEc--chhheeEEEeccccceEEEEEeec
Confidence 344444344545567889999998743344444443 246789999999999999987653
No 446
>PRK13615 lipoprotein LpqB; Provisional
Probab=41.70 E-value=1.3e+02 Score=36.17 Aligned_cols=76 Identities=21% Similarity=0.351 Sum_probs=47.6
Q ss_pred cceEEEEEcCCCCeEEEEeC----CeEEE---EecCCCCCcce-ee-ee-ecCCCCEEEEEECCCCCEEEEE---eCCCc
Q 003087 11 KKQVSLFISPRGERVAVAAV----NQVTI---LQKDDDYQEPC-GI-FN-CTGLGASIYGAWSESHDVLGIV---DDTHT 77 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~----~~i~i---w~~~~~~~~~~-~~-~~-~~~~~~v~~vafSPDG~~LAs~---~~dgt 77 (849)
+.|..|.+|+||-++|.-.+ ++|.| -+ .++....+ .. .. ..+...+.+++|..|+++.+.+ +.+..
T Consensus 417 ~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R-~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laVl~~~~~~~~~ 495 (557)
T PRK13615 417 GRVVSLEVARDGARVLVQLETGAGPQLLVASIVR-DGGVPTSLTTTPLELLASPGTPLDATWVDELDVATLTLAPDGERQ 495 (557)
T ss_pred CeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEe-CCCcceEeeeccEEcccCcCcceeeEEcCCCEEEEEeccCCCCce
Confidence 56999999999999998753 45443 22 22100112 11 11 1124478999999999986655 34566
Q ss_pred EEEEecCCcc
Q 003087 78 VYFFKANGEE 87 (849)
Q Consensus 78 IrlWd~~g~~ 87 (849)
+++..+.|..
T Consensus 496 v~~v~v~g~~ 505 (557)
T PRK13615 496 VELHQVGGPS 505 (557)
T ss_pred EEEEECCCcc
Confidence 8887877653
No 447
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=40.52 E-value=31 Score=41.12 Aligned_cols=34 Identities=15% Similarity=0.277 Sum_probs=26.8
Q ss_pred cccceEEEcc----CCCEEEEEeCCCcEEEEecCCCcc
Q 003087 230 LAHPKVLISP----QGKFVATSDTNGCLYIFEMDKDNF 263 (849)
Q Consensus 230 ~~V~~vafSP----DG~~LAs~s~Dgtv~LWd~~~~~~ 263 (849)
..+..+++++ +..+|++.+.|++||+||+.++++
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 3556778888 889999999999999999999865
No 448
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=39.75 E-value=5.6e+02 Score=28.31 Aligned_cols=91 Identities=14% Similarity=0.169 Sum_probs=46.5
Q ss_pred CceEEEEEcCCCceEEEEecCCCCccccCC-----CCCCceeeEEEecCCcCcccceeccccceeeccC--CCccccccc
Q 003087 161 QNVICTDYHPELSLLSVVSNTDTSSLTSSG-----NSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPK--GHEVQLAHP 233 (849)
Q Consensus 161 ~~V~svafsPdg~lLas~g~d~t~~~~~~~-----~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~--g~~h~~~V~ 233 (849)
.+.-+++++|||+.|.++-... +..-+ ..|. .++++..+......... +. .|...+ .......|.
T Consensus 147 ~G~E~la~~~dG~~l~~~~E~~---l~~d~~~~~~~~~~-~~ri~~~d~~~~~~~~~--~~--~y~ld~~~~~~~~~~is 218 (326)
T PF13449_consen 147 RGFEGLAVSPDGRTLFAAMESP---LKQDGPRANPDNGS-PLRILRYDPKTPGEPVA--EY--AYPLDPPPTAPGDNGIS 218 (326)
T ss_pred CCeEEEEECCCCCEEEEEECcc---ccCCCcccccccCc-eEEEEEecCCCCCccce--EE--EEeCCccccccCCCCce
Confidence 4799999999999666554332 11111 1122 36777766532111110 00 000000 000135788
Q ss_pred eEEEccCCCEEEEEe-----CCCcEEEEecC
Q 003087 234 KVLISPQGKFVATSD-----TNGCLYIFEMD 259 (849)
Q Consensus 234 ~vafSPDG~~LAs~s-----~Dgtv~LWd~~ 259 (849)
.+.+=|||++|+-== ....++|+.++
T Consensus 219 d~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 219 DIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred eEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 899999999876421 23466666555
No 449
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.69 E-value=8.5e+02 Score=30.15 Aligned_cols=71 Identities=18% Similarity=0.220 Sum_probs=48.1
Q ss_pred EEEEECCCCCEEEEEeCC----------CcEEEEecCCccceecccccccccccEEEEEecCCcccccccceeEEEEeCC
Q 003087 58 IYGAWSESHDVLGIVDDT----------HTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSD 127 (849)
Q Consensus 58 ~~vafSPDG~~LAs~~~d----------gtIrlWd~~g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~D 127 (849)
.-++--|-|.-||+.-++ ..|+|++..|..+.++.-.++ .+.++-|++ +..+.+++.|
T Consensus 36 ~~fa~Ap~gGpIAV~r~p~~~~~~~~a~~~I~If~~sG~lL~~~~w~~~----~lI~mgWs~--------~eeLI~v~k~ 103 (829)
T KOG2280|consen 36 VYFACAPFGGPIAVTRSPSKLVPLYSARPYIRIFNISGQLLGRILWKHG----ELIGMGWSD--------DEELICVQKD 103 (829)
T ss_pred eEEEecccCCceEEEecccccccccccceeEEEEeccccchHHHHhcCC----CeeeecccC--------CceEEEEecc
Confidence 344455555555555544 359999999998877766553 455666544 4457788999
Q ss_pred CcEEEEEecCCCC
Q 003087 128 GFLHQIEISQDPS 140 (849)
Q Consensus 128 g~v~lw~~~~~~~ 140 (849)
|++++++......
T Consensus 104 g~v~Vy~~~ge~i 116 (829)
T KOG2280|consen 104 GTVHVYGLLGEFI 116 (829)
T ss_pred ceEEEeecchhhh
Confidence 9999999864433
No 450
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.44 E-value=8.3e+02 Score=30.80 Aligned_cols=88 Identities=15% Similarity=0.196 Sum_probs=52.0
Q ss_pred CcEEEEEecCCccccccC--CCCCCeEEEEEecccccccCCCCcccccccccchhhhhhhhhccccceeeEEEEEEeccC
Q 003087 311 SIITMIDVLSGLKVKETD--PKLRGHVFLLESKSVEERFNVSNYDRETVYSNHTVQLIEERFNRSGNTMLYWSLISFSER 388 (849)
Q Consensus 311 gti~lwdl~~~~~l~~~~--~~~~g~~~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 388 (849)
.+|.+-+.-+++.++++. +...|+++.+.+.+..+ .+|. . +.+..+.+. ...
T Consensus 306 d~V~avs~Ln~~vI~~~~~n~s~~g~~LGlv~D~va~-------------~~w~---Y--------Tq~~vf~~~--vnd 359 (911)
T KOG2034|consen 306 DRVLAVSLLNGEVIYRDQFNESELGGILGLVSDSVAE-------------TFWL---Y--------TQTSVFEYG--VND 359 (911)
T ss_pred CceeeeeccCccccchhccCchhcccceeeeeccccc-------------eEEE---E--------Eeceeeeee--ecc
Confidence 456666666666565421 13467777776644221 3331 1 111233333 234
Q ss_pred CHHHHHHHHHcccCHHHHHHHHHHhCCChhHHHHHH
Q 003087 389 SVPEMYNILISHRNYQTAIDFANYHGLDTDEVLKSQ 424 (849)
Q Consensus 389 tp~e~~~~~i~~~~~~~A~~lA~~~~ld~d~Vyk~~ 424 (849)
-+.++....+++|+|+.|++.|+.--.-.|.|+-+|
T Consensus 360 E~R~vWk~yLd~g~y~kAL~~ar~~p~~le~Vl~~q 395 (911)
T KOG2034|consen 360 EARDVWKTYLDKGEFDKALEIARTRPDALETVLLKQ 395 (911)
T ss_pred chHHHHHHHHhcchHHHHHHhccCCHHHHHHHHHHH
Confidence 467788889999999999999987744456676655
No 451
>PRK13613 lipoprotein LpqB; Provisional
Probab=38.38 E-value=1.4e+02 Score=36.21 Aligned_cols=75 Identities=13% Similarity=0.272 Sum_probs=43.7
Q ss_pred ceEEEEEcCCCCeEEEEeC----CeEEE---EecCCCCCcceeeee--ecCCCCEEEEEECCCCCEEEEEe-CC--CcEE
Q 003087 12 KQVSLFISPRGERVAVAAV----NQVTI---LQKDDDYQEPCGIFN--CTGLGASIYGAWSESHDVLGIVD-DT--HTVY 79 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas~----~~i~i---w~~~~~~~~~~~~~~--~~~~~~v~~vafSPDG~~LAs~~-~d--gtIr 79 (849)
.|.+|.+||||-++|.-.+ ++|.| -...++. ..+.... ..+...+.+++|..++++++.|. .+ ..++
T Consensus 456 ~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~-~~l~~~~~l~~~l~~v~~~~W~~~~sL~Vlg~~~~~~~~v~ 534 (599)
T PRK13613 456 RVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAV-VSVEEFRSLAPELEDVTDMSWAGDSQLVVLGREEGGVQQAR 534 (599)
T ss_pred EeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCc-EEeeccEEeccCCCccceeEEcCCCEEEEEeccCCCCcceE
Confidence 6999999999999998653 44432 2212221 1122221 11234589999999999877553 22 3344
Q ss_pred EEecCCcc
Q 003087 80 FFKANGEE 87 (849)
Q Consensus 80 lWd~~g~~ 87 (849)
+.++.|..
T Consensus 535 ~v~vdG~~ 542 (599)
T PRK13613 535 YVQVDGST 542 (599)
T ss_pred EEecCCcC
Confidence 44555643
No 452
>COG4246 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.67 E-value=4.8e+02 Score=28.12 Aligned_cols=75 Identities=13% Similarity=0.110 Sum_probs=44.4
Q ss_pred ccceEEEEEcCCC-CeEEEEeCCe----EEEEecCCCC-Ccceeeeee----cCC---C----CEEEEEECCCCCEEEEE
Q 003087 10 TKKQVSLFISPRG-ERVAVAAVNQ----VTILQKDDDY-QEPCGIFNC----TGL---G----ASIYGAWSESHDVLGIV 72 (849)
Q Consensus 10 ~~~v~slafSPdG-~~LAsas~~~----i~iw~~~~~~-~~~~~~~~~----~~~---~----~v~~vafSPDG~~LAs~ 72 (849)
.+.+.+++|-||| +++|+..++. -...|..... +..-++.++ .|+ . .-..+|.- ||+.++|-
T Consensus 73 fgalSairf~~dG~~fiav~DtG~wfeg~i~rDa~grl~Gl~dgr~~pm~d~~Gqpi~~K~e~DaEGLAvr-dG~~~Vsf 151 (340)
T COG4246 73 FGALSAIRFLPDGSQFIAVTDTGHWFEGKIQRDANGRLAGLTDGRLTPMRDLDGQPIQEKWEVDAEGLAVR-DGDALVSF 151 (340)
T ss_pred ccchheeEeccCCceeEEEeecCceEEEEEEeccCCCcccccccceeecccCCCCCCcchhccccccceEe-cCceEEEe
Confidence 3778899999999 6777775441 1233432210 111112221 111 1 11356766 99999999
Q ss_pred eCCCcEEEEecCC
Q 003087 73 DDTHTVYFFKANG 85 (849)
Q Consensus 73 ~~dgtIrlWd~~g 85 (849)
..|..|.++-+.+
T Consensus 152 Er~hRI~iyp~~p 164 (340)
T COG4246 152 ERDHRIWIYPVPP 164 (340)
T ss_pred eccceeEEeccCC
Confidence 9999888887654
No 453
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=36.41 E-value=1.2e+02 Score=33.22 Aligned_cols=70 Identities=14% Similarity=0.119 Sum_probs=47.4
Q ss_pred cCHHHHHHHHHHh--CCChhHHHHHHHhcCCC-C----------------HHHHHHhhhcCCChHHHHHHHhhccCCCHH
Q 003087 401 RNYQTAIDFANYH--GLDTDEVLKSQWLNSSQ-G----------------TDEINMFLSKIKDQAFILSECVDKVGRTED 461 (849)
Q Consensus 401 ~~~~~A~~lA~~~--~ld~d~Vyk~~w~~s~~-~----------------~~~i~~~L~kI~D~~wV~~~Cl~~~~~~~~ 461 (849)
.-|.||+.|+++. |||.+.|.+. |+.+.. . .+.+.+.+..-++-.|++.++++.=.|..-
T Consensus 183 ~~~aE~~~l~~~~g~~ld~~~~~~i-~~~g~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~a~~~g~p~P~ 261 (298)
T TIGR00872 183 AAIAEGFEILRNSQFDFDIPEVARV-WRRGSVIRSWLLDLTAIAFRESPDLAEFSGRVSDSGEGRWTVIAAIDLGVPAPV 261 (298)
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHH-HcCCchhHhHHHHHHHHHHhcCCcHHHHHHHHHhhccHHHHHHHHHHhCCCHHH
Confidence 4589999999998 5799999987 887652 1 233444433334558999999997555544
Q ss_pred HHHHHHHHHh
Q 003087 462 SAKALLAHGL 471 (849)
Q Consensus 462 ~~~~LL~~gL 471 (849)
.+.+|..+..
T Consensus 262 ~~~al~~~~~ 271 (298)
T TIGR00872 262 IATSLQSRFA 271 (298)
T ss_pred HHHHHHHHHH
Confidence 4446655554
No 454
>PF13817 DDE_Tnp_IS66_C: IS66 C-terminal element
Probab=36.18 E-value=26 Score=26.11 Aligned_cols=30 Identities=23% Similarity=0.373 Sum_probs=22.2
Q ss_pred CCCCccHHHHHHHhhCCCCCCcccccccCCC
Q 003087 553 HPYSLASSVLQILAAIPETVPVQTYTQLLPG 583 (849)
Q Consensus 553 h~~~l~p~~l~ILs~lPEt~~P~~Y~~LLP~ 583 (849)
|+-....|+-.+|+.||. -+..+|..|||+
T Consensus 9 ngv~P~~yL~~vL~~i~~-~~~~~~~~LLPw 38 (39)
T PF13817_consen 9 NGVNPYAYLTDVLERIPN-HPANDIDELLPW 38 (39)
T ss_pred cCCCHHHHHHHHHHHHcc-CCHHHHHHhCCC
Confidence 333333455699999999 566899999997
No 455
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=35.83 E-value=87 Score=22.62 Aligned_cols=24 Identities=8% Similarity=0.332 Sum_probs=19.1
Q ss_pred cCCCEEEEEe-CCCcEEEEecCCCc
Q 003087 239 PQGKFVATSD-TNGCLYIFEMDKDN 262 (849)
Q Consensus 239 PDG~~LAs~s-~Dgtv~LWd~~~~~ 262 (849)
|||++|.++. .+++|.++|..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~ 25 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNK 25 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCe
Confidence 7888777765 58999999997664
No 456
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=34.91 E-value=2.8e+02 Score=32.57 Aligned_cols=37 Identities=5% Similarity=-0.079 Sum_probs=24.9
Q ss_pred CEEEEEECC-CCCEEEEEeCCCcEEEEec-CCccceecc
Q 003087 56 ASIYGAWSE-SHDVLGIVDDTHTVYFFKA-NGEEITRFT 92 (849)
Q Consensus 56 ~v~~vafSP-DG~~LAs~~~dgtIrlWd~-~g~~~~~l~ 92 (849)
.+.++.+-| |+.+|+|+..-.+|-.+|. +|+....+-
T Consensus 272 H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg 310 (477)
T PF05935_consen 272 HINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILG 310 (477)
T ss_dssp -EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES
T ss_pred ccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeC
Confidence 468999988 8888888887778888884 455544443
No 457
>PRK13614 lipoprotein LpqB; Provisional
Probab=34.03 E-value=9e+02 Score=29.23 Aligned_cols=147 Identities=12% Similarity=0.071 Sum_probs=69.6
Q ss_pred ceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCC--cEEEEecCCc-cc
Q 003087 12 KQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTH--TVYFFKANGE-EI 88 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dg--tIrlWd~~g~-~~ 88 (849)
.+.+.+.|+||+.+|...++...+|-...+ +.....+. ....+.=.|.++| .+=++.+++ .|....-.|. ..
T Consensus 344 ~~~s~avS~~g~~~A~~~~~~~~l~~~~~g-~~~~~~~~---g~~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~ 418 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGSRTTLYTVSPG-QPARALTS---GSTLTRPSFSPQD-WVWTAGPGGNGRIVAYRPTGVAEG 418 (573)
T ss_pred cccceeecCCCceEEEecCCCcEEEEecCC-Ccceeeec---CCCccCCcccCCC-CEEEeeCCCCceEEEEecCCCccc
Confidence 567899999999999887544445532211 11111111 1224445666666 333333322 3333333222 10
Q ss_pred e-----eccccccccc-ccEEEEEecCCcccccccceeEEEEeCCCc--EEEEEecCCCCc--ccccccccCCcceeccc
Q 003087 89 T-----RFTNKHLKVS-LPIIGLIAQDETDVQRSCLCSFTVFTSDGF--LHQIEISQDPSA--SISSASASSSGLTLRRQ 158 (849)
Q Consensus 89 ~-----~l~~~~~~~~-~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~--v~lw~~~~~~~~--~~~~~~~~~~~~~l~~~ 158 (849)
. ..... ... ..|..+..|+|+.-.+ .+...+|. |.+--+..+... ..+. ....+ +.
T Consensus 419 ~~~~~~~v~~~--~l~g~~I~~lrvSrDG~R~A------vi~~~~g~~~V~va~V~R~~~G~P~~L~-----~~~~~-~~ 484 (573)
T PRK13614 419 AQAPTVTLTAD--WLAGRTVKELRVSREGVRAL------VISEQNGKSRVQVAGIVRNEDGTPRELT-----APITL-AA 484 (573)
T ss_pred ccccceeeccc--ccCCCeeEEEEECCCccEEE------EEEEeCCccEEEEEEEEeCCCCCeEEcc-----Cceec-cc
Confidence 0 11110 111 2488888888764321 22334554 555444332111 1111 11112 11
Q ss_pred cCCceEEEEEcCCCceEEEE
Q 003087 159 FPQNVICTDYHPELSLLSVV 178 (849)
Q Consensus 159 ~~~~V~svafsPdg~lLas~ 178 (849)
...+.+++|..++.+++.+
T Consensus 485 -~~~~~sl~W~~~~sl~V~~ 503 (573)
T PRK13614 485 -DSDADTGAWVGDSTVVVTK 503 (573)
T ss_pred -CCCcceeEEcCCCEEEEEe
Confidence 2468999999999977554
No 458
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=33.26 E-value=1.2e+02 Score=37.35 Aligned_cols=72 Identities=15% Similarity=0.042 Sum_probs=49.1
Q ss_pred cceEEEEEc--CCCCeEEEEeC-CeEEEEecCC-CCCcceeeeeecCCCCEEEEEECCCC-----C-EEEEEeCCCcEEE
Q 003087 11 KKQVSLFIS--PRGERVAVAAV-NQVTILQKDD-DYQEPCGIFNCTGLGASIYGAWSESH-----D-VLGIVDDTHTVYF 80 (849)
Q Consensus 11 ~~v~slafS--PdG~~LAsas~-~~i~iw~~~~-~~~~~~~~~~~~~~~~v~~vafSPDG-----~-~LAs~~~dgtIrl 80 (849)
..+|+|++. ...++||+++. ..|+|+-... +....... ...+...|.+|+|-++. . .|++++-.|++-+
T Consensus 164 ~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~-s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~ 242 (717)
T PF08728_consen 164 ASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVP-SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWT 242 (717)
T ss_pred CceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccc-ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEE
Confidence 578999999 88889998875 5788885332 11111110 11124578899997654 2 8889999999998
Q ss_pred Eec
Q 003087 81 FKA 83 (849)
Q Consensus 81 Wd~ 83 (849)
|++
T Consensus 243 ~~I 245 (717)
T PF08728_consen 243 FKI 245 (717)
T ss_pred EEE
Confidence 887
No 459
>PHA02713 hypothetical protein; Provisional
Probab=33.15 E-value=9.2e+02 Score=28.91 Aligned_cols=28 Identities=7% Similarity=-0.027 Sum_probs=21.3
Q ss_pred cceEEEccCCCEEEEEeCCC--cEEEEecCCC
Q 003087 232 HPKVLISPQGKFVATSDTNG--CLYIFEMDKD 261 (849)
Q Consensus 232 V~~vafSPDG~~LAs~s~Dg--tv~LWd~~~~ 261 (849)
...+++ +|++-++||.|| ++-.+|..+.
T Consensus 506 ~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 506 LHTILH--DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred ceeEEE--CCEEEEEeeecceeehhhcCcccc
Confidence 335566 999999999999 6666777765
No 460
>PRK13614 lipoprotein LpqB; Provisional
Probab=32.98 E-value=9.5e+02 Score=29.02 Aligned_cols=79 Identities=14% Similarity=0.027 Sum_probs=43.5
Q ss_pred ceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcc--cceeccccceeeccCCCccccccceEEEcc
Q 003087 162 NVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELE--QLYTTQIEGLYCEPKGHEVQLAHPKVLISP 239 (849)
Q Consensus 162 ~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~--~l~~~~~~~~~~~~~g~~h~~~V~~vafSP 239 (849)
.|..+..|+||-.+|.....+ |...|.+=-+....+.+ .|..+. .. + +...+.+++|..
T Consensus 435 ~I~~lrvSrDG~R~Avi~~~~----------g~~~V~va~V~R~~~G~P~~L~~~~------~~-~--~~~~~~sl~W~~ 495 (573)
T PRK13614 435 TVKELRVSREGVRALVISEQN----------GKSRVQVAGIVRNEDGTPRELTAPI------TL-A--ADSDADTGAWVG 495 (573)
T ss_pred eeEEEEECCCccEEEEEEEeC----------CccEEEEEEEEeCCCCCeEEccCce------ec-c--cCCCcceeEEcC
Confidence 499999999999988765332 11113332222111122 121110 00 1 224788999999
Q ss_pred CCCEEEEEe---CCCcEEEEecC
Q 003087 240 QGKFVATSD---TNGCLYIFEMD 259 (849)
Q Consensus 240 DG~~LAs~s---~Dgtv~LWd~~ 259 (849)
++.+++... .+..+++-.+.
T Consensus 496 ~~sl~V~~~~~~~~~~~~~v~v~ 518 (573)
T PRK13614 496 DSTVVVTKASATSNVVPELLSVD 518 (573)
T ss_pred CCEEEEEeccCCCcceEEEEEeC
Confidence 999877654 23455666664
No 461
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=30.71 E-value=81 Score=27.91 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=22.9
Q ss_pred cceEEEEEcCCCCeEEEEe--CCeEEEEecC
Q 003087 11 KKQVSLFISPRGERVAVAA--VNQVTILQKD 39 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas--~~~i~iw~~~ 39 (849)
...+.|++|||+++|-+++ .+.|.++...
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 4456799999999998886 5788888643
No 462
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=30.36 E-value=1e+03 Score=28.64 Aligned_cols=22 Identities=14% Similarity=0.368 Sum_probs=17.2
Q ss_pred CCCEEEEEeCCCc-----EEEEecCCC
Q 003087 240 QGKFVATSDTNGC-----LYIFEMDKD 261 (849)
Q Consensus 240 DG~~LAs~s~Dgt-----v~LWd~~~~ 261 (849)
+|++.|.||.||. |.-+|..+.
T Consensus 475 ~~~iYvvGG~~~~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 475 NGKIYVVGGFDGTSALSSVERYDPETN 501 (571)
T ss_pred CCEEEEECCccCCCccceEEEEcCCCC
Confidence 8999999999983 555777654
No 463
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.11 E-value=1.6e+02 Score=37.75 Aligned_cols=110 Identities=15% Similarity=0.010 Sum_probs=59.4
Q ss_pred CEEEEEECCCCCEEEEEeCCC--cEEEEecCC--ccc---eecc-cccccccc--cEEEEEecCCcccccccceeEEEEe
Q 003087 56 ASIYGAWSESHDVLGIVDDTH--TVYFFKANG--EEI---TRFT-NKHLKVSL--PIIGLIAQDETDVQRSCLCSFTVFT 125 (849)
Q Consensus 56 ~v~~vafSPDG~~LAs~~~dg--tIrlWd~~g--~~~---~~l~-~~~~~~~~--~V~~l~fs~~~~~~~s~~~~~~~~s 125 (849)
.+..++-++|++..++..... -|.++|+.. ... .... .+...+.. ....+.+.|.-. ..++++.
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp------~n~av~l 175 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP------LNSAVDL 175 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc------chhhhhc
Confidence 445667788999998766544 788889742 111 1111 11111111 122333333110 1234456
Q ss_pred CCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCC
Q 003087 126 SDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDT 183 (849)
Q Consensus 126 ~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t 183 (849)
.|+.|++..+..-.... + ++ .....+.+|+|||.|+.+++|-+.+|
T Consensus 176 ~dlsl~V~~~~~~~~~v--~--------s~--p~t~~~Tav~WSprGKQl~iG~nnGt 221 (1405)
T KOG3630|consen 176 SDLSLRVKSTKQLAQNV--T--------SF--PVTNSQTAVLWSPRGKQLFIGRNNGT 221 (1405)
T ss_pred cccchhhhhhhhhhhhh--c--------cc--CcccceeeEEeccccceeeEecCCCe
Confidence 77888777665321110 0 11 12346899999999999998877664
No 464
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=29.80 E-value=85 Score=21.23 Aligned_cols=24 Identities=17% Similarity=0.059 Sum_probs=17.7
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEE
Q 003087 58 IYGAWSESHDVLGIVDDTHTVYFF 81 (849)
Q Consensus 58 ~~vafSPDG~~LAs~~~dgtIrlW 81 (849)
..|+.+++|+++++=...+.|+++
T Consensus 5 ~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEETTSEEEEEECCCTEEEEE
T ss_pred cEEEEeCCCCEEEEECCCCEEEEC
Confidence 467888888888877777766653
No 465
>PF08344 TRP_2: Transient receptor ion channel II; InterPro: IPR013555 TRP (transient receptor potential) channels can be described as tetramers formed by subunits with six transmembrane domains and containing cation-selective pores, which in several cases show high calcium permeability. The molecular architecture of TRP channels is reminiscent of voltage-gated channels and comprises six putative transmembrane segments (S1-S6), intracellular N- and C-termini, and a pore-forming reentrant loop between S5 and S6 []. TRP channels represent a superfamily conserved from worms to humans that comprise seven subfamilies []: TRPC (canonical), TRPV (vanilloid), TRPM (melastatin or long TRPs), TRPA (ankyrin), whose only member is the transmembrane protein 1, TRPP(polycystin), TRPML (mucolipin) and TRPN (Nomp-C homologues), which has a single member that can be found in worms, flies, and zebrafish. TRPs are classified essentially according to their primary amino acid sequence rather than selectivity or ligand affinity, due to their heterogenous properties and complex regulation. TRP channels are involved in many physiological functions, ranging from pure sensory functions, such as pheromone signalling, taste transduction, nociception, and temperature sensation, over homeostatic functions, such as Ca2+ and Mg2+ reabsorption and osmoregulation, to many other motile functions, such as muscle contraction and vaso-motor control []. This domain is found in Trp proteins, generally located to the C terminus of the Ankyrin repeats (IPR002110 from INTERPRO).
Probab=29.56 E-value=1.2e+02 Score=25.30 Aligned_cols=37 Identities=19% Similarity=0.153 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhhhcCCchHHHHHhhcCcHHHHHHHHHHc
Q 003087 500 LLQFGDRLETYLGINMGRYYAEYSKFRIMPIHEAGVNLAES 540 (849)
Q Consensus 500 ll~~ldRL~t~~~i~~~~f~~~~~~Fr~~~lv~~A~~~A~~ 540 (849)
|-+-+-||.+|+++. ++.|.-+.+.+.++.|..++.+
T Consensus 15 l~~S~~rln~YrAla----Spayi~Lts~DPi~~AF~Ls~e 51 (63)
T PF08344_consen 15 LRHSRSRLNTYRALA----SPAYISLTSDDPILTAFELSWE 51 (63)
T ss_pred HHHHHHHHHHHHHHh----CHHHHHHcCccHHHHHHHHHHH
Confidence 555588999999877 6789999999999999988764
No 466
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=29.39 E-value=3e+02 Score=28.70 Aligned_cols=69 Identities=6% Similarity=0.040 Sum_probs=45.1
Q ss_pred EEEEcCCCCeEEEE-eCCeEEEEecCCCCCc--c--eeeeee-------cCCCCEEEEEECCCCCEEEEEeCCCcEEEEe
Q 003087 15 SLFISPRGERVAVA-AVNQVTILQKDDDYQE--P--CGIFNC-------TGLGASIYGAWSESHDVLGIVDDTHTVYFFK 82 (849)
Q Consensus 15 slafSPdG~~LAsa-s~~~i~iw~~~~~~~~--~--~~~~~~-------~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd 82 (849)
.+.+..+|++|.+. ++|.+.+||....... + +..+.. ...+.|..+..+.+|.-|++-+ +|..+.|+
T Consensus 15 ~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 15 VSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred eEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence 34567788888665 5799999998753110 0 000001 1246788888898998887765 47788888
Q ss_pred cC
Q 003087 83 AN 84 (849)
Q Consensus 83 ~~ 84 (849)
.+
T Consensus 94 ~~ 95 (219)
T PF07569_consen 94 PD 95 (219)
T ss_pred cc
Confidence 75
No 467
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=28.21 E-value=5.4e+02 Score=29.89 Aligned_cols=30 Identities=17% Similarity=0.378 Sum_probs=23.4
Q ss_pred ccceEEEccCCCEEEEEeCCCcEEEEecCCC
Q 003087 231 AHPKVLISPQGKFVATSDTNGCLYIFEMDKD 261 (849)
Q Consensus 231 ~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~ 261 (849)
++.-++|||.+.+|++- ..|.+++..+++.
T Consensus 359 ~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr 388 (733)
T COG4590 359 APQLVAMSPNQAYLLSE-DQGKIRLAQLENR 388 (733)
T ss_pred CcceeeeCcccchheee-cCCceEEEEecCC
Confidence 45569999999999864 4678888887754
No 468
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=27.76 E-value=24 Score=23.22 Aligned_cols=8 Identities=38% Similarity=0.904 Sum_probs=6.1
Q ss_pred EEccCCCE
Q 003087 236 LISPQGKF 243 (849)
Q Consensus 236 afSPDG~~ 243 (849)
.|||||++
T Consensus 7 ~FSp~Grl 14 (23)
T PF10584_consen 7 TFSPDGRL 14 (23)
T ss_dssp SBBTTSSB
T ss_pred eECCCCeE
Confidence 47898875
No 469
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=27.34 E-value=66 Score=27.01 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=19.0
Q ss_pred HHHHHHHHcccCHHHHHHHHHHh
Q 003087 391 PEMYNILISHRNYQTAIDFANYH 413 (849)
Q Consensus 391 ~e~~~~~i~~~~~~~A~~lA~~~ 413 (849)
-+.|++++.+++|+||-.+|..-
T Consensus 10 ~~~F~~l~~~g~y~eAA~~AA~s 32 (66)
T PF13838_consen 10 VQQFNELFSQGQYEEAAKVAANS 32 (66)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHhC
Confidence 35789999999999999999765
No 470
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=27.23 E-value=5e+02 Score=30.60 Aligned_cols=63 Identities=13% Similarity=0.145 Sum_probs=44.1
Q ss_pred CCCEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEEec
Q 003087 240 QGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVL 319 (849)
Q Consensus 240 DG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwdl~ 319 (849)
.+-++|.||.-|-|+|+|.-+-+- -.-+|. ....|.-|.-+.+|..++|.|..++.+-|++
T Consensus 572 esGyIa~as~kGDirLyDRig~rA-KtalP~------------------lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRA-KTALPG------------------LGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred cCceEEEecCCCceeeehhhcchh-hhcCcc------------------cccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 345799999999999999876432 111221 1123555666689998899999999999987
Q ss_pred CC
Q 003087 320 SG 321 (849)
Q Consensus 320 ~~ 321 (849)
..
T Consensus 633 ik 634 (776)
T COG5167 633 IK 634 (776)
T ss_pred cc
Confidence 43
No 471
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=26.88 E-value=1.4e+02 Score=36.16 Aligned_cols=59 Identities=14% Similarity=-0.031 Sum_probs=41.3
Q ss_pred ceEEEEEcCCCCeEEEEeC---C---eEEEEecCCCCCcceeeeeecC-CCCEEEEEECCCCCEEEEEeCCC
Q 003087 12 KQVSLFISPRGERVAVAAV---N---QVTILQKDDDYQEPCGIFNCTG-LGASIYGAWSESHDVLGIVDDTH 76 (849)
Q Consensus 12 ~v~slafSPdG~~LAsas~---~---~i~iw~~~~~~~~~~~~~~~~~-~~~v~~vafSPDG~~LAs~~~dg 76 (849)
.+-+++.|||++++|-+-| + ++++.++.++ ...... .+...+++|.+||+.|-....|.
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg------~~~~d~i~~~~~~~~Wa~d~~~lfYt~~d~ 195 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATG------EELPDEITNTSGSFAWAADGKTLFYTRLDE 195 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccc------cccchhhcccccceEEecCCCeEEEEEEcC
Confidence 4667899999999998843 2 5777777643 222112 33456899999999998776654
No 472
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=26.39 E-value=1.2e+02 Score=24.45 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=16.2
Q ss_pred ccceEEEccCCCEEEEEeC
Q 003087 231 AHPKVLISPQGKFVATSDT 249 (849)
Q Consensus 231 ~V~~vafSPDG~~LAs~s~ 249 (849)
.++++++-|||++|+.+..
T Consensus 2 ~~~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYV 20 (55)
T ss_pred ceEEEEECCCCcEEEEEEe
Confidence 3568999999999999865
No 473
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=26.01 E-value=7.9e+02 Score=25.82 Aligned_cols=60 Identities=17% Similarity=0.298 Sum_probs=41.1
Q ss_pred CCCCeEEEEeCCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC
Q 003087 20 PRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN 84 (849)
Q Consensus 20 PdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~ 84 (849)
..|+.|++|.++.+-+++..+ ...+.... ....|..+...|+-+.|.+-++ ++++++++.
T Consensus 5 ~~~~~L~vGt~~Gl~~~~~~~-~~~~~~i~---~~~~I~ql~vl~~~~~llvLsd-~~l~~~~L~ 64 (275)
T PF00780_consen 5 SWGDRLLVGTEDGLYVYDLSD-PSKPTRIL---KLSSITQLSVLPELNLLLVLSD-GQLYVYDLD 64 (275)
T ss_pred cCCCEEEEEECCCEEEEEecC-CccceeEe---ecceEEEEEEecccCEEEEEcC-CccEEEEch
Confidence 468899999866677777522 12222221 1334999999998888777654 999999975
No 474
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=25.66 E-value=1.1e+02 Score=27.03 Aligned_cols=27 Identities=15% Similarity=0.391 Sum_probs=22.6
Q ss_pred ceEEEccCCCEEEEEeC-CCcEEEEecC
Q 003087 233 PKVLISPQGKFVATSDT-NGCLYIFEMD 259 (849)
Q Consensus 233 ~~vafSPDG~~LAs~s~-Dgtv~LWd~~ 259 (849)
..|++|||+++|..++. .++|+++...
T Consensus 57 NGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 57 NGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred ceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 35999999999988875 6899998765
No 475
>PRK13613 lipoprotein LpqB; Provisional
Probab=24.27 E-value=1.3e+03 Score=27.94 Aligned_cols=28 Identities=14% Similarity=-0.049 Sum_probs=21.7
Q ss_pred CEEEEEECCCCCEEEEEeCCC-cEEEEec
Q 003087 56 ASIYGAWSESHDVLGIVDDTH-TVYFFKA 83 (849)
Q Consensus 56 ~v~~vafSPDG~~LAs~~~dg-tIrlWd~ 83 (849)
.+.+.+.|+||+.+|..+.++ ++++..+
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~ 392 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSL 392 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEecc
Confidence 567999999999999887766 4555444
No 476
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=23.97 E-value=1.2e+02 Score=36.90 Aligned_cols=31 Identities=3% Similarity=-0.059 Sum_probs=26.8
Q ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEecCC
Q 003087 55 GASIYGAWSESHDVLGIVDDTHTVYFFKANG 85 (849)
Q Consensus 55 ~~v~~vafSPDG~~LAs~~~dgtIrlWd~~g 85 (849)
..++++.=.|.|+-.++|..||.|+|++...
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~ 45 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIP 45 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecc
Confidence 4567788889999999999999999999753
No 477
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=23.30 E-value=21 Score=41.09 Aligned_cols=111 Identities=16% Similarity=0.188 Sum_probs=75.0
Q ss_pred ceEEEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCC
Q 003087 162 NVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQG 241 (849)
Q Consensus 162 ~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG 241 (849)
..-.++|.-+|..+|+..... | .+.+|+++.... +++- +.| . |++.. +.|||-+
T Consensus 76 ~aldm~wDkegdvlavlAek~----------~--piylwd~n~eyt-qqLE---~gg------~--~s~sl--l~wsKg~ 129 (615)
T KOG2247|consen 76 KALDMAWDKEGDVLAVLAEKT----------G--PIYLWDVNSEYT-QQLE---SGG------T--SSKSL--LAWSKGT 129 (615)
T ss_pred hHhhhhhccccchhhhhhhcC----------C--CeeechhhhhhH-HHHh---ccC------c--chHHH--HhhccCC
Confidence 345667777787766553322 3 389999987521 1110 001 1 34443 7899999
Q ss_pred CEEEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEEEEEEeCCcEEEEE
Q 003087 242 KFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMID 317 (849)
Q Consensus 242 ~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~la~a~~dgti~lwd 317 (849)
..++.+-..|.+.|.+..+.+.. ... |+|...+..++|-+.+..+..++|.++.+-.
T Consensus 130 ~el~ig~~~gn~viynhgtsR~i---iv~----------------Gkh~RRgtq~av~lEd~vil~dcd~~L~v~~ 186 (615)
T KOG2247|consen 130 PELVIGNNAGNIVIYNHGTSRRI---IVM----------------GKHQRRGTQIAVTLEDYVILCDCDNTLSVTT 186 (615)
T ss_pred ccccccccccceEEEeccchhhh---hhh----------------cccccceeEEEecccceeeecCcHHHHHHhh
Confidence 99999989999999998876542 110 3466778999999999999999998775544
No 478
>PF11115 DUF2623: Protein of unknown function (DUF2623); InterPro: IPR022574 This family is conserved in the Enterobacteriaceae family. Several members are named as YghW. The function is not known.
Probab=23.30 E-value=61 Score=28.76 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=15.1
Q ss_pred HHHHHHHHhCCChhHHHH
Q 003087 405 TAIDFANYHGLDTDEVLK 422 (849)
Q Consensus 405 ~A~~lA~~~~ld~d~Vyk 422 (849)
||=.||++||||.|.|-.
T Consensus 56 eAG~L~RrYgL~rd~v~~ 73 (95)
T PF11115_consen 56 EAGELTRRYGLDRDMVAD 73 (95)
T ss_pred HHHHHHHHHCccHHHHHH
Confidence 477899999999999843
No 479
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=22.15 E-value=3.2e+02 Score=25.19 Aligned_cols=58 Identities=16% Similarity=0.292 Sum_probs=38.3
Q ss_pred EEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeeeecCCC-CEEEEEECCCCCEEEEEeCCCcEEEEecC
Q 003087 14 VSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLG-ASIYGAWSESHDVLGIVDDTHTVYFFKAN 84 (849)
Q Consensus 14 ~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~~~~~~-~v~~vafSPDG~~LAs~~~dgtIrlWd~~ 84 (849)
..|.|..||+++..-..+.+ +|..... .+.+ ....+.+..||.+.... .++.+ ||.-.
T Consensus 21 ~~L~l~~dGnLvl~~~~~~~-iWss~~t----------~~~~~~~~~~~L~~~GNlvl~d-~~~~~-lW~Sf 79 (114)
T PF01453_consen 21 YTLILQSDGNLVLYDSNGSV-IWSSNNT----------SGRGNSGCYLVLQDDGNLVLYD-SSGNV-LWQSF 79 (114)
T ss_dssp EEEEEETTSEEEEEETTTEE-EEE--S-----------TTSS-SSEEEEEETTSEEEEEE-TTSEE-EEEST
T ss_pred ccceECCCCeEEEEcCCCCE-EEEeccc----------CCccccCeEEEEeCCCCEEEEe-ecceE-EEeec
Confidence 66899999998888766666 9974210 0111 35678888899988776 34444 88763
No 480
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=20.92 E-value=2.5e+02 Score=36.55 Aligned_cols=79 Identities=18% Similarity=0.158 Sum_probs=45.6
Q ss_pred ceEEEccCCCEEEE------------EeCCCcEEEEecCCCcccccccccccccccccccccCCCC----CCCCCCcEEE
Q 003087 233 PKVLISPQGKFVAT------------SDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGR----TKPISDITDF 296 (849)
Q Consensus 233 ~~vafSPDG~~LAs------------~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~----~~~~~~v~~v 296 (849)
.+++|+|+|-+-++ .++||+|.+.--....|.-+.-+ ..+-++.++ ..+...+.++
T Consensus 596 r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~--------~cdcfs~~~~~At~A~lnsp~al 667 (1899)
T KOG4659|consen 596 RDIAVGTDGALYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAA--------CCDCFSLRDVAATQAKLNSPYAL 667 (1899)
T ss_pred hceeecCCceEEEEeccchhhhheEEeccCceEEEecCCCCCCCccccc--------CCccccccchhhhccccCCcceE
Confidence 68999999977554 45677777764433322111101 011122211 1345678889
Q ss_pred EEecCCEEEEEEeCCcEEEEEecC
Q 003087 297 AWWSDNILILARKSSIITMIDVLS 320 (849)
Q Consensus 297 aws~D~~la~a~~dgti~lwdl~~ 320 (849)
|-+|||.+.+|. .|+++|-.+..
T Consensus 668 aVsPdg~v~IAD-~gN~rIr~Vs~ 690 (1899)
T KOG4659|consen 668 AVSPDGDVIIAD-SGNSRIRKVSA 690 (1899)
T ss_pred EECCCCcEEEec-CCchhhhhhhh
Confidence 999999887775 56666655543
No 481
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=20.71 E-value=9.9e+02 Score=25.04 Aligned_cols=119 Identities=10% Similarity=0.076 Sum_probs=64.3
Q ss_pred cceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCccee-ee----------eecCCCCEEEEE---ECCCCCEEEEEeCCC
Q 003087 11 KKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCG-IF----------NCTGLGASIYGA---WSESHDVLGIVDDTH 76 (849)
Q Consensus 11 ~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~-~~----------~~~~~~~v~~va---fSPDG~~LAs~~~dg 76 (849)
..|..+..-|+-+.|.+-+|+++.+.++..-...... .. .......+...+ -...+.+|+++-. .
T Consensus 36 ~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~k-k 114 (275)
T PF00780_consen 36 SSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVK-K 114 (275)
T ss_pred ceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEEC-C
Confidence 4599999999999998889999988886532111100 00 001122333333 2244556666555 4
Q ss_pred cEEEEecCCcc-ce-ecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCc
Q 003087 77 TVYFFKANGEE-IT-RFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSA 141 (849)
Q Consensus 77 tIrlWd~~g~~-~~-~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~ 141 (849)
+|++|...+.. -. .... .......+.++.|.++. +.+ +....+.+.|+.++...
T Consensus 115 ~i~i~~~~~~~~~f~~~~k-e~~lp~~~~~i~~~~~~---------i~v-~~~~~f~~idl~~~~~~ 170 (275)
T PF00780_consen 115 KILIYEWNDPRNSFSKLLK-EISLPDPPSSIAFLGNK---------ICV-GTSKGFYLIDLNTGSPS 170 (275)
T ss_pred EEEEEEEECCcccccceeE-EEEcCCCcEEEEEeCCE---------EEE-EeCCceEEEecCCCCce
Confidence 89999886421 11 1111 12233456677775432 333 33445777777765443
No 482
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=20.45 E-value=1.3e+02 Score=20.45 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=19.7
Q ss_pred cCCEEEEEEeCCcEEEEEecCCccc
Q 003087 300 SDNILILARKSSIITMIDVLSGLKV 324 (849)
Q Consensus 300 ~D~~la~a~~dgti~lwdl~~~~~l 324 (849)
.|+.+.+++.+|.+...|..+|+.+
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~~ 29 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEIL 29 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcEE
Confidence 4667778888999999998888743
No 483
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=20.41 E-value=92 Score=28.97 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHH
Q 003087 403 YQTAIDFANYHGLDTDEVLKSQ 424 (849)
Q Consensus 403 ~~~A~~lA~~~~ld~d~Vyk~~ 424 (849)
..||+.||+++|||++.+++.-
T Consensus 21 ~aEa~~la~~~Gld~~~~~~vl 42 (122)
T PF14833_consen 21 LAEALALAEKAGLDPEQLLDVL 42 (122)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHH
Confidence 6799999999999999999864
No 484
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=20.23 E-value=6.8e+02 Score=31.39 Aligned_cols=107 Identities=10% Similarity=-0.016 Sum_probs=50.6
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEecC-CccceecccccccccccEEEEEecCCcccccc-cc-eeEEEEeCCCcEEEEEe
Q 003087 59 YGAWSESHDVLGIVDDTHTVYFFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQRS-CL-CSFTVFTSDGFLHQIEI 135 (849)
Q Consensus 59 ~vafSPDG~~LAs~~~dgtIrlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s-~~-~~~~~~s~Dg~v~lw~~ 135 (849)
.+.|+ +++.+... .+|.+..++.. |.....+....... ....+..++|+...... .+ .....-++-+...++++
T Consensus 58 ~~~~~-~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~~~-~~~~~~~~s~d~~~~~~~~~~~~~~rhs~~~~~~~~~~ 134 (755)
T KOG2100|consen 58 NLTWI-DGQELLYR-EDGNIVVSNALYGLSSVPLTNSTFGR-LRYSSDLISPDRKYILLGRNYKKRFRHSYTAKYHLYDL 134 (755)
T ss_pred cccee-ccceeecc-cCCceEeecccCcccEEEecccchhh-ccccccccChhhhhheeccCcccccceeeEEEEEEEEc
Confidence 34555 45555555 68888888875 33322222221110 00111123343322111 00 11222245566778887
Q ss_pred cCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEec
Q 003087 136 SQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSN 180 (849)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~ 180 (849)
.++..... .. .....+..+.|+|.|+.|+-+-.
T Consensus 135 ~~~~~~~~---------~~---~~~~~~~~~~wsp~~~~l~yv~~ 167 (755)
T KOG2100|consen 135 NTGEKLHP---------PE---YEGSKIQYASWSPLGNDLAYVLH 167 (755)
T ss_pred CCCCcccC---------cc---cCCCeeEEEEEcCCCCEEEEEEe
Confidence 76651100 00 11234799999999977765544
Done!